Query 003349
Match_columns 828
No_of_seqs 599 out of 5030
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 21:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0466 Lon ATP-dependent Lon 100.0 9E-132 2E-136 1097.7 75.0 723 31-819 54-776 (782)
2 KOG2004 Mitochondrial ATP-depe 100.0 1E-121 3E-126 1007.5 65.1 791 2-823 102-904 (906)
3 PRK10787 DNA-binding ATP-depen 100.0 2E-112 3E-117 1010.7 79.0 714 38-819 61-774 (784)
4 TIGR00763 lon ATP-dependent pr 100.0 4E-110 8E-115 1003.1 82.4 723 39-816 52-775 (775)
5 TIGR02902 spore_lonB ATP-depen 100.0 2.6E-49 5.6E-54 455.7 39.1 403 314-816 66-531 (531)
6 TIGR02903 spore_lon_C ATP-depe 100.0 2.1E-47 4.5E-52 445.9 45.1 501 179-816 66-615 (615)
7 PRK13765 ATP-dependent proteas 100.0 1E-43 2.2E-48 410.6 33.7 353 408-819 227-605 (637)
8 TIGR00764 lon_rel lon-related 100.0 4.4E-43 9.5E-48 407.9 36.4 338 408-819 218-596 (608)
9 TIGR02653 Lon_rel_chp conserve 100.0 6.1E-41 1.3E-45 375.7 32.8 205 608-817 466-673 (675)
10 PF05362 Lon_C: Lon protease ( 100.0 3.6E-39 7.9E-44 322.6 17.4 204 609-817 1-204 (204)
11 COG1066 Sms Predicted ATP-depe 100.0 5.2E-37 1.1E-41 323.7 16.5 231 510-817 221-455 (456)
12 COG0542 clpA ATP-binding subun 100.0 6.9E-35 1.5E-39 335.8 24.6 332 224-590 342-776 (786)
13 PRK11823 DNA repair protein Ra 100.0 8.6E-35 1.9E-39 328.0 21.9 187 607-817 255-445 (446)
14 TIGR00416 sms DNA repair prote 100.0 3.6E-33 7.8E-38 314.8 19.7 182 607-812 269-454 (454)
15 PRK10865 protein disaggregatio 100.0 3E-30 6.6E-35 312.2 32.5 401 149-589 387-849 (857)
16 PRK11034 clpA ATP-dependent Cl 100.0 1.6E-29 3.5E-34 298.9 27.3 312 244-589 385-736 (758)
17 TIGR02639 ClpA ATP-dependent C 100.0 2.5E-29 5.4E-34 301.9 26.0 309 244-586 381-729 (731)
18 TIGR03345 VI_ClpV1 type VI sec 100.0 1.1E-27 2.4E-32 288.9 30.4 258 276-546 529-829 (852)
19 CHL00095 clpC Clp protease ATP 100.0 1.8E-27 3.9E-32 288.9 32.3 284 275-592 471-805 (821)
20 TIGR00368 Mg chelatase-related 100.0 6.2E-28 1.4E-32 273.9 18.4 159 640-815 2-163 (499)
21 COG1222 RPT1 ATP-dependent 26S 99.9 7.4E-28 1.6E-32 250.0 12.7 228 291-554 129-375 (406)
22 TIGR03346 chaperone_ClpB ATP-d 99.9 1.4E-25 3.1E-30 273.0 32.5 280 276-589 528-846 (852)
23 PF13541 ChlI: Subunit ChlI of 99.9 1.6E-26 3.5E-31 211.3 12.9 120 654-785 1-121 (121)
24 KOG0730 AAA+-type ATPase [Post 99.9 3.2E-26 6.9E-31 254.3 13.9 210 306-554 427-655 (693)
25 COG1067 LonB Predicted ATP-dep 99.9 3.7E-25 8.1E-30 254.6 23.0 340 407-819 225-622 (647)
26 KOG0733 Nuclear AAA ATPase (VC 99.9 3.1E-25 6.8E-30 242.4 14.2 211 308-555 506-737 (802)
27 PRK09862 putative ATP-dependen 99.9 1.1E-24 2.4E-29 245.8 19.2 163 636-816 3-168 (506)
28 KOG0738 AAA+-type ATPase [Post 99.9 1.9E-24 4.1E-29 225.6 12.8 210 312-555 211-436 (491)
29 KOG0733 Nuclear AAA ATPase (VC 99.9 1.9E-23 4.2E-28 228.5 17.7 209 312-555 189-415 (802)
30 KOG0736 Peroxisome assembly fa 99.9 6.3E-23 1.4E-27 229.8 20.2 209 310-555 669-899 (953)
31 TIGR01242 26Sp45 26S proteasom 99.9 6.4E-24 1.4E-28 236.1 8.2 300 217-554 8-346 (364)
32 COG1223 Predicted ATPase (AAA+ 99.9 4.1E-23 8.8E-28 204.9 12.2 212 306-554 114-338 (368)
33 KOG0727 26S proteasome regulat 99.9 1.6E-22 3.5E-27 199.5 14.4 211 308-554 150-379 (408)
34 KOG1051 Chaperone HSP104 and r 99.9 9.4E-22 2E-26 230.3 22.4 281 277-590 526-854 (898)
35 PRK03992 proteasome-activating 99.9 7E-23 1.5E-27 228.6 10.0 231 289-554 107-355 (389)
36 PRK05342 clpX ATP-dependent pr 99.9 1.8E-21 3.8E-26 216.5 21.1 243 303-553 61-384 (412)
37 KOG0734 AAA+-type ATPase conta 99.9 3.4E-22 7.3E-27 215.5 13.9 213 303-554 294-524 (752)
38 TIGR00382 clpX endopeptidase C 99.9 2.6E-21 5.5E-26 213.8 20.5 240 303-552 67-389 (413)
39 KOG0728 26S proteasome regulat 99.9 2.9E-21 6.2E-26 190.5 13.7 212 308-554 142-371 (404)
40 PTZ00454 26S protease regulato 99.9 6.8E-21 1.5E-25 211.5 18.1 212 308-554 140-369 (398)
41 CHL00195 ycf46 Ycf46; Provisio 99.9 7.2E-21 1.6E-25 215.5 17.3 204 313-554 228-447 (489)
42 KOG0739 AAA+-type ATPase [Post 99.9 6.6E-22 1.4E-26 199.7 7.3 214 313-555 133-354 (439)
43 KOG0735 AAA+-type ATPase [Post 99.8 1.4E-20 3.1E-25 209.0 15.8 206 312-555 666-889 (952)
44 PF05496 RuvB_N: Holliday junc 99.8 3.9E-20 8.5E-25 184.5 16.4 190 309-529 20-213 (233)
45 KOG0737 AAA+-type ATPase [Post 99.8 6.4E-21 1.4E-25 199.9 11.1 207 313-555 92-315 (386)
46 KOG0731 AAA+-type ATPase conta 99.8 2.7E-20 5.9E-25 213.7 17.0 208 310-554 308-536 (774)
47 COG0464 SpoVK ATPases of the A 99.8 4.1E-20 8.8E-25 214.3 18.3 207 312-554 241-465 (494)
48 TIGR01243 CDC48 AAA family ATP 99.8 7E-20 1.5E-24 221.2 18.7 206 310-554 450-675 (733)
49 CHL00181 cbbX CbbX; Provisiona 99.8 1.5E-19 3.3E-24 193.1 18.1 218 301-554 11-261 (287)
50 KOG0726 26S proteasome regulat 99.8 1E-20 2.2E-25 190.5 7.5 215 304-554 176-409 (440)
51 PLN00020 ribulose bisphosphate 99.8 4.1E-19 8.8E-24 188.4 18.2 169 338-529 146-330 (413)
52 KOG0729 26S proteasome regulat 99.8 2.5E-20 5.4E-25 185.4 7.9 217 302-554 166-401 (435)
53 PTZ00361 26 proteosome regulat 99.8 1.1E-19 2.4E-24 202.9 13.7 209 310-554 180-407 (438)
54 KOG0652 26S proteasome regulat 99.8 3.6E-20 7.8E-25 183.8 8.7 211 308-554 166-395 (424)
55 TIGR02880 cbbX_cfxQ probable R 99.8 8.9E-19 1.9E-23 187.4 17.7 218 301-554 10-260 (284)
56 TIGR01241 FtsH_fam ATP-depende 99.8 4.7E-19 1E-23 204.8 16.8 204 313-554 55-278 (495)
57 COG4930 Predicted ATP-dependen 99.8 4E-18 8.6E-23 178.2 21.8 202 609-817 475-681 (683)
58 COG1219 ClpX ATP-dependent pro 99.8 1.5E-18 3.3E-23 177.4 17.0 237 304-548 52-368 (408)
59 TIGR02881 spore_V_K stage V sp 99.8 2.9E-18 6.3E-23 182.0 18.9 205 314-554 7-245 (261)
60 TIGR03689 pup_AAA proteasome A 99.8 1.4E-18 3E-23 196.5 16.4 166 313-498 182-378 (512)
61 COG0606 Predicted ATPase with 99.8 2.3E-19 5.1E-24 194.9 9.6 152 649-818 2-156 (490)
62 PRK05201 hslU ATP-dependent pr 99.8 3.8E-18 8.2E-23 185.5 18.3 243 302-550 4-409 (443)
63 KOG0732 AAA+-type ATPase conta 99.8 2E-18 4.4E-23 203.2 16.5 211 312-554 264-492 (1080)
64 TIGR00390 hslU ATP-dependent p 99.8 9.2E-18 2E-22 182.4 19.2 240 305-550 4-407 (441)
65 CHL00176 ftsH cell division pr 99.8 3.5E-18 7.6E-23 199.6 16.1 204 313-554 183-406 (638)
66 KOG0651 26S proteasome regulat 99.7 1.2E-18 2.6E-23 177.7 7.1 214 305-553 124-355 (388)
67 COG2255 RuvB Holliday junction 99.7 3.9E-17 8.4E-22 165.5 17.5 187 311-528 24-214 (332)
68 COG0465 HflB ATP-dependent Zn 99.7 1.4E-17 3.1E-22 188.6 15.5 206 311-554 148-373 (596)
69 KOG0740 AAA+-type ATPase [Post 99.7 3.4E-18 7.4E-23 186.2 9.9 211 308-554 148-374 (428)
70 COG2256 MGS1 ATPase related to 99.7 2.7E-17 5.9E-22 174.5 16.4 183 313-543 24-216 (436)
71 COG2802 Uncharacterized protei 99.7 3.8E-17 8.2E-22 160.7 16.0 153 30-196 55-210 (221)
72 CHL00206 ycf2 Ycf2; Provisiona 99.7 1.9E-17 4.2E-22 202.5 15.7 191 339-554 1629-1860(2281)
73 TIGR01243 CDC48 AAA family ATP 99.7 8.3E-17 1.8E-21 194.6 17.0 205 312-555 177-400 (733)
74 KOG0741 AAA+-type ATPase [Post 99.7 1.1E-17 2.3E-22 180.8 7.7 180 341-554 257-458 (744)
75 KOG0730 AAA+-type ATPase [Post 99.7 7.8E-17 1.7E-21 180.0 14.7 204 313-554 184-404 (693)
76 PRK10733 hflB ATP-dependent me 99.7 1.3E-16 2.9E-21 188.7 17.0 205 312-554 151-375 (644)
77 cd01121 Sms Sms (bacterial rad 99.7 2.5E-17 5.4E-22 181.3 9.7 112 607-736 257-372 (372)
78 KOG0745 Putative ATP-dependent 99.7 5.8E-16 1.3E-20 164.4 18.2 200 341-548 227-509 (564)
79 TIGR00635 ruvB Holliday juncti 99.7 7.1E-16 1.5E-20 168.0 18.2 188 313-531 4-195 (305)
80 PRK00080 ruvB Holliday junctio 99.7 9.8E-16 2.1E-20 168.2 18.0 200 312-544 24-227 (328)
81 PRK14956 DNA polymerase III su 99.7 5.8E-16 1.3E-20 172.7 14.9 197 312-544 17-227 (484)
82 KOG0989 Replication factor C, 99.7 4.5E-16 9.7E-21 159.5 11.7 174 313-529 36-222 (346)
83 TIGR02640 gas_vesic_GvpN gas v 99.7 2E-15 4.3E-20 160.1 17.1 151 339-497 20-197 (262)
84 PRK07003 DNA polymerase III su 99.6 1.9E-15 4.1E-20 174.1 16.5 197 312-544 15-225 (830)
85 PLN03025 replication factor C 99.6 2.4E-15 5.3E-20 164.4 15.0 179 314-541 14-202 (319)
86 PRK14962 DNA polymerase III su 99.6 3.1E-15 6.8E-20 169.8 16.1 196 312-544 13-223 (472)
87 PRK12323 DNA polymerase III su 99.6 1.8E-15 3.8E-20 172.4 13.6 194 312-541 15-227 (700)
88 PRK14960 DNA polymerase III su 99.6 4.9E-15 1.1E-19 169.2 14.9 193 312-544 14-224 (702)
89 PRK14949 DNA polymerase III su 99.6 8.6E-15 1.9E-19 171.9 15.8 192 312-540 15-221 (944)
90 PRK14958 DNA polymerase III su 99.6 6.3E-15 1.4E-19 169.0 14.4 193 312-544 15-225 (509)
91 PF02190 LON: ATP-dependent pr 99.6 2.8E-14 6E-19 145.9 17.3 140 40-192 57-205 (205)
92 PF07724 AAA_2: AAA domain (Cd 99.6 1.4E-15 3.1E-20 149.8 6.8 118 340-467 3-131 (171)
93 PF07726 AAA_3: ATPase family 99.6 6.3E-16 1.4E-20 141.1 3.4 124 342-478 1-130 (131)
94 PRK07994 DNA polymerase III su 99.6 2.2E-14 4.8E-19 166.5 16.2 192 312-540 15-221 (647)
95 PRK14961 DNA polymerase III su 99.6 2.9E-14 6.2E-19 158.4 16.5 193 312-544 15-225 (363)
96 PRK14964 DNA polymerase III su 99.6 1.9E-14 4E-19 162.6 15.1 193 312-544 12-222 (491)
97 TIGR02639 ClpA ATP-dependent C 99.6 1.3E-14 2.9E-19 174.9 14.2 200 313-548 182-402 (731)
98 TIGR01650 PD_CobS cobaltochela 99.6 6E-14 1.3E-18 149.6 17.1 148 340-497 64-232 (327)
99 PRK14951 DNA polymerase III su 99.6 3.1E-14 6.6E-19 165.1 15.8 197 312-544 15-230 (618)
100 PRK06645 DNA polymerase III su 99.6 4.2E-14 9.1E-19 161.1 16.6 192 313-544 21-234 (507)
101 TIGR03345 VI_ClpV1 type VI sec 99.6 2.5E-14 5.5E-19 173.5 15.7 200 313-548 187-407 (852)
102 PRK07764 DNA polymerase III su 99.6 3.8E-14 8.3E-19 169.8 16.9 197 312-544 14-226 (824)
103 COG1220 HslU ATP-dependent pro 99.6 6.5E-14 1.4E-18 144.8 16.1 135 407-546 250-406 (444)
104 PRK14957 DNA polymerase III su 99.6 4.7E-14 1E-18 161.6 15.9 195 312-544 15-225 (546)
105 KOG2028 ATPase related to the 99.6 3.5E-14 7.6E-19 147.7 13.3 158 339-531 161-330 (554)
106 PF00004 AAA: ATPase family as 99.5 2.9E-15 6.3E-20 141.5 4.8 120 343-483 1-131 (132)
107 PRK14952 DNA polymerase III su 99.5 4.6E-14 1E-18 163.2 15.6 196 312-544 12-224 (584)
108 PRK13342 recombination factor 99.5 6.9E-14 1.5E-18 158.2 16.4 183 313-544 12-201 (413)
109 PRK04195 replication factor C 99.5 1.7E-13 3.7E-18 158.0 19.3 176 314-529 15-194 (482)
110 PRK08691 DNA polymerase III su 99.5 3.9E-14 8.6E-19 163.5 13.8 193 312-544 15-225 (709)
111 PRK14963 DNA polymerase III su 99.5 1.1E-13 2.4E-18 158.4 17.1 196 313-544 14-222 (504)
112 COG1750 Archaeal serine protea 99.5 8.1E-14 1.8E-18 154.1 15.2 157 649-817 49-209 (579)
113 KOG0742 AAA+-type ATPase [Post 99.5 4.2E-14 9E-19 149.0 11.9 163 315-500 357-530 (630)
114 PHA02244 ATPase-like protein 99.5 4.8E-13 1E-17 144.0 20.2 135 339-487 118-263 (383)
115 PHA02544 44 clamp loader, smal 99.5 1.4E-13 3E-18 150.7 16.3 177 314-528 22-200 (316)
116 KOG0743 AAA+-type ATPase [Post 99.5 9.2E-14 2E-18 150.5 14.3 153 319-498 211-383 (457)
117 PRK05563 DNA polymerase III su 99.5 1.5E-13 3.3E-18 159.9 17.2 197 312-544 15-225 (559)
118 PRK14959 DNA polymerase III su 99.5 9.3E-14 2E-18 159.9 14.6 192 313-541 16-222 (624)
119 COG0714 MoxR-like ATPases [Gen 99.5 1.1E-13 2.4E-18 152.0 14.3 177 304-496 15-201 (329)
120 KOG0744 AAA+-type ATPase [Post 99.5 2.4E-14 5.3E-19 147.1 8.1 160 319-500 148-342 (423)
121 PRK14965 DNA polymerase III su 99.5 9.9E-14 2.1E-18 162.1 14.3 196 312-544 15-225 (576)
122 PF07728 AAA_5: AAA domain (dy 99.5 8.9E-15 1.9E-19 140.0 4.4 125 342-477 1-139 (139)
123 PRK05896 DNA polymerase III su 99.5 1.5E-13 3.2E-18 157.4 14.5 193 313-543 16-224 (605)
124 PRK13341 recombination factor 99.5 1.4E-13 2.9E-18 163.3 14.5 191 313-545 28-223 (725)
125 PRK07133 DNA polymerase III su 99.5 2.5E-13 5.3E-18 158.6 16.1 195 313-543 18-223 (725)
126 PRK13531 regulatory ATPase Rav 99.5 4.7E-13 1E-17 148.9 17.5 202 303-525 10-234 (498)
127 PRK14969 DNA polymerase III su 99.5 1.5E-13 3.3E-18 158.7 14.2 197 312-544 15-225 (527)
128 COG3604 FhlA Transcriptional r 99.5 1.5E-13 3.2E-18 149.7 12.7 213 314-544 224-453 (550)
129 COG2812 DnaX DNA polymerase II 99.5 1.1E-13 2.3E-18 155.8 11.7 195 312-546 15-227 (515)
130 PRK08451 DNA polymerase III su 99.5 4.1E-13 9E-18 153.1 16.5 196 313-544 14-223 (535)
131 PRK07940 DNA polymerase III su 99.5 2.4E-13 5.1E-18 151.1 14.1 185 313-531 5-207 (394)
132 COG2204 AtoC Response regulato 99.5 2.2E-13 4.7E-18 151.2 13.4 216 311-544 139-371 (464)
133 COG3829 RocR Transcriptional r 99.5 3E-13 6.5E-18 149.5 13.6 215 313-544 245-476 (560)
134 PRK14953 DNA polymerase III su 99.5 7.6E-13 1.7E-17 151.1 16.8 194 313-544 16-225 (486)
135 PRK06647 DNA polymerase III su 99.5 5.6E-13 1.2E-17 154.5 15.8 197 312-544 15-225 (563)
136 PRK06305 DNA polymerase III su 99.5 6.6E-13 1.4E-17 150.8 16.1 193 312-544 16-227 (451)
137 PRK14954 DNA polymerase III su 99.5 6.4E-13 1.4E-17 154.8 15.9 198 312-545 15-234 (620)
138 TIGR02397 dnaX_nterm DNA polym 99.5 7.6E-13 1.6E-17 147.4 15.8 196 313-544 14-223 (355)
139 PRK14955 DNA polymerase III su 99.5 4E-13 8.7E-18 151.0 13.1 197 312-544 15-233 (397)
140 PRK09111 DNA polymerase III su 99.4 8.9E-13 1.9E-17 153.4 15.9 194 312-543 23-237 (598)
141 PRK12402 replication factor C 99.4 1.2E-12 2.5E-17 144.8 15.9 191 313-540 15-227 (337)
142 PRK13407 bchI magnesium chelat 99.4 8E-13 1.7E-17 143.3 13.9 223 313-554 8-289 (334)
143 PRK14970 DNA polymerase III su 99.4 1.7E-12 3.8E-17 145.0 17.0 193 312-544 16-214 (367)
144 PRK14948 DNA polymerase III su 99.4 1.5E-12 3.3E-17 152.6 16.7 194 313-542 16-225 (620)
145 PRK11034 clpA ATP-dependent Cl 99.4 6.8E-13 1.5E-17 158.1 13.6 202 313-550 186-408 (758)
146 PRK00440 rfc replication facto 99.4 2.4E-12 5.3E-17 141.0 16.9 180 314-541 18-205 (319)
147 PRK14971 DNA polymerase III su 99.4 2E-12 4.2E-17 151.7 16.5 197 312-544 16-227 (614)
148 PRK10865 protein disaggregatio 99.4 1E-12 2.2E-17 160.2 14.6 175 313-523 178-373 (857)
149 TIGR02974 phageshock_pspF psp 99.4 1.4E-12 3.1E-17 142.4 14.2 210 316-544 2-230 (329)
150 CHL00095 clpC Clp protease ATP 99.4 1.9E-12 4.2E-17 158.0 15.6 199 313-547 179-397 (821)
151 PRK14950 DNA polymerase III su 99.4 2.7E-12 5.8E-17 151.0 15.9 196 312-543 15-225 (585)
152 TIGR03346 chaperone_ClpB ATP-d 99.4 2.4E-12 5.1E-17 157.7 14.6 200 313-548 173-393 (852)
153 PRK06893 DNA replication initi 99.4 2.1E-12 4.6E-17 134.3 12.1 161 339-544 38-208 (229)
154 PTZ00112 origin recognition co 99.4 1.1E-11 2.3E-16 143.7 18.4 204 314-548 756-986 (1164)
155 PRK08084 DNA replication initi 99.4 3E-12 6.4E-17 133.6 12.2 160 340-544 45-214 (235)
156 CHL00081 chlI Mg-protoporyphyr 99.4 6E-12 1.3E-16 136.7 14.9 211 313-535 17-290 (350)
157 PRK05022 anaerobic nitric oxid 99.4 6.8E-12 1.5E-16 145.6 16.1 212 314-544 188-417 (509)
158 PRK12422 chromosomal replicati 99.4 5.2E-12 1.1E-16 142.9 14.3 172 341-549 142-323 (445)
159 PRK11331 5-methylcytosine-spec 99.4 6.6E-12 1.4E-16 138.9 14.5 163 315-488 177-362 (459)
160 TIGR01817 nifA Nif-specific re 99.4 6.4E-12 1.4E-16 147.1 15.1 212 313-544 196-425 (534)
161 TIGR02928 orc1/cdc6 family rep 99.3 3.6E-11 7.8E-16 134.4 20.1 214 314-553 16-256 (365)
162 TIGR00362 DnaA chromosomal rep 99.3 4.2E-12 9E-17 143.7 12.6 172 340-548 136-319 (405)
163 PRK11608 pspF phage shock prot 99.3 1.3E-11 2.8E-16 135.0 15.6 214 313-544 6-237 (326)
164 COG1221 PspF Transcriptional r 99.3 6E-12 1.3E-16 137.5 12.5 215 312-545 77-307 (403)
165 KOG0991 Replication factor C, 99.3 2.7E-12 5.9E-17 126.4 8.8 168 313-527 27-204 (333)
166 TIGR02030 BchI-ChlI magnesium 99.3 1.5E-11 3.3E-16 133.7 15.5 201 313-527 4-267 (337)
167 PRK00149 dnaA chromosomal repl 99.3 3.3E-12 7.1E-17 146.3 10.6 171 341-547 149-330 (450)
168 PRK14086 dnaA chromosomal repl 99.3 8.4E-12 1.8E-16 143.2 12.9 170 342-548 316-497 (617)
169 PRK15424 propionate catabolism 99.3 1.4E-11 3E-16 141.7 14.5 212 313-544 219-462 (538)
170 PRK08903 DnaA regulatory inact 99.3 3.5E-11 7.7E-16 125.2 15.9 170 319-544 26-204 (227)
171 smart00350 MCM minichromosome 99.3 3E-11 6.6E-16 139.9 16.8 177 305-498 195-400 (509)
172 TIGR02329 propionate_PrpR prop 99.3 2.7E-11 5.8E-16 139.5 15.3 212 313-544 212-447 (526)
173 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.8E-11 6.1E-16 125.8 14.0 176 317-544 21-206 (226)
174 PF01078 Mg_chelatase: Magnesi 99.3 1.8E-12 3.8E-17 129.3 4.4 162 313-489 3-206 (206)
175 PRK10820 DNA-binding transcrip 99.3 4E-11 8.7E-16 139.3 15.7 214 312-544 203-434 (520)
176 TIGR00678 holB DNA polymerase 99.3 5.2E-11 1.1E-15 120.1 14.4 156 339-529 13-183 (188)
177 PRK15429 formate hydrogenlyase 99.3 7.9E-11 1.7E-15 141.9 17.9 213 313-544 376-606 (686)
178 PRK00411 cdc6 cell division co 99.3 2.1E-10 4.6E-15 129.6 20.4 213 313-552 30-263 (394)
179 PF00308 Bac_DnaA: Bacterial d 99.3 2E-11 4.4E-16 125.7 10.4 170 340-547 34-216 (219)
180 PRK05642 DNA replication initi 99.3 4E-11 8.8E-16 125.0 12.7 159 341-545 46-214 (234)
181 PRK08727 hypothetical protein; 99.3 1E-10 2.2E-15 122.0 15.4 159 341-545 42-210 (233)
182 COG3480 SdrC Predicted secrete 99.2 9.4E-12 2E-16 127.9 7.1 109 703-815 219-338 (342)
183 COG1224 TIP49 DNA helicase TIP 99.2 2.2E-10 4.9E-15 119.9 16.7 89 407-525 291-391 (450)
184 PRK09112 DNA polymerase III su 99.2 1E-10 2.2E-15 128.4 15.0 180 313-528 23-231 (351)
185 PRK14088 dnaA chromosomal repl 99.2 1.3E-11 2.8E-16 140.1 8.2 172 341-548 131-314 (440)
186 TIGR02442 Cob-chelat-sub cobal 99.2 1.4E-10 3.1E-15 137.6 17.2 202 313-538 4-275 (633)
187 PRK07399 DNA polymerase III su 99.2 5.5E-11 1.2E-15 128.8 12.0 161 312-497 3-194 (314)
188 PRK05564 DNA polymerase III su 99.2 9.5E-11 2.1E-15 127.9 13.7 156 313-497 4-164 (313)
189 PRK11388 DNA-binding transcrip 99.2 1.2E-10 2.5E-15 139.6 15.6 211 312-544 324-551 (638)
190 PRK06620 hypothetical protein; 99.2 6.7E-11 1.5E-15 121.3 11.4 145 341-544 45-194 (214)
191 PF06068 TIP49: TIP49 C-termin 99.2 1.5E-10 3.2E-15 123.6 14.1 88 408-525 279-378 (398)
192 smart00763 AAA_PrkA PrkA AAA d 99.2 2.1E-10 4.5E-15 124.0 15.2 177 314-498 52-327 (361)
193 PRK07471 DNA polymerase III su 99.2 3.3E-10 7.2E-15 125.0 16.5 161 313-497 19-212 (365)
194 PRK09087 hypothetical protein; 99.2 1.2E-10 2.7E-15 120.4 12.1 151 340-545 44-201 (226)
195 PF00158 Sigma54_activat: Sigm 99.2 3.7E-11 8.1E-16 118.2 6.8 149 315-478 1-163 (168)
196 PTZ00111 DNA replication licen 99.2 8.3E-10 1.8E-14 131.0 18.5 172 305-494 442-653 (915)
197 PF13177 DNA_pol3_delta2: DNA 99.2 3.7E-11 8E-16 117.8 6.1 144 317-486 1-162 (162)
198 COG0470 HolB ATPase involved i 99.2 1.3E-10 2.8E-15 127.7 11.1 143 314-491 2-174 (325)
199 PRK04132 replication factor C 99.2 2.2E-10 4.8E-15 136.7 13.7 151 339-529 563-723 (846)
200 KOG0736 Peroxisome assembly fa 99.1 2.4E-10 5.2E-15 129.8 12.7 179 339-545 430-611 (953)
201 COG0542 clpA ATP-binding subun 99.1 1.1E-09 2.3E-14 128.3 18.3 202 313-550 170-392 (786)
202 cd00009 AAA The AAA+ (ATPases 99.1 2.5E-10 5.5E-15 109.0 11.1 144 317-484 2-151 (151)
203 PRK08058 DNA polymerase III su 99.1 1.1E-10 2.3E-15 128.0 9.5 159 314-496 6-180 (329)
204 COG1474 CDC6 Cdc6-related prot 99.1 9.7E-10 2.1E-14 121.2 15.9 211 315-554 19-248 (366)
205 PRK14087 dnaA chromosomal repl 99.1 2.8E-10 6E-15 129.4 11.7 171 341-544 142-324 (450)
206 PRK10923 glnG nitrogen regulat 99.1 6.6E-10 1.4E-14 128.6 15.0 212 314-544 139-368 (469)
207 TIGR00368 Mg chelatase-related 99.1 5.9E-10 1.3E-14 127.5 14.3 162 313-490 192-396 (499)
208 PF05673 DUF815: Protein of un 99.1 1.3E-09 2.8E-14 111.0 14.7 178 313-532 27-231 (249)
209 TIGR02031 BchD-ChlD magnesium 99.1 7.9E-10 1.7E-14 129.7 14.7 175 340-528 16-217 (589)
210 KOG2035 Replication factor C, 99.1 7.1E-10 1.5E-14 112.5 12.1 179 315-529 15-220 (351)
211 KOG0478 DNA replication licens 99.1 1.1E-09 2.3E-14 123.2 14.6 229 304-546 420-699 (804)
212 TIGR02915 PEP_resp_reg putativ 99.1 8.3E-10 1.8E-14 126.9 14.1 211 315-544 141-369 (445)
213 PRK05707 DNA polymerase III su 99.1 4.5E-10 9.8E-15 122.3 10.9 140 339-497 21-177 (328)
214 COG1241 MCM2 Predicted ATPase 99.1 8.7E-10 1.9E-14 127.9 13.5 208 306-529 279-540 (682)
215 COG1239 ChlI Mg-chelatase subu 99.1 2.6E-09 5.5E-14 115.8 15.6 175 311-498 15-232 (423)
216 COG0606 Predicted ATPase with 99.1 4.2E-10 9E-15 123.4 9.2 162 313-490 179-384 (490)
217 PRK15115 response regulator Gl 99.0 2.9E-09 6.2E-14 122.4 14.6 191 339-544 156-364 (444)
218 PRK11361 acetoacetate metaboli 99.0 3E-09 6.5E-14 122.7 14.6 211 315-544 145-373 (457)
219 COG0593 DnaA ATPase involved i 99.0 2.2E-09 4.7E-14 118.0 11.8 174 340-549 113-296 (408)
220 TIGR01818 ntrC nitrogen regula 99.0 4.9E-09 1.1E-13 121.1 14.8 211 315-544 136-364 (463)
221 KOG0480 DNA replication licens 99.0 4.5E-09 9.7E-14 117.4 13.4 212 304-528 336-590 (764)
222 PRK09862 putative ATP-dependen 99.0 1.5E-09 3.3E-14 123.5 9.6 160 313-488 191-391 (506)
223 PRK06871 DNA polymerase III su 99.0 7.1E-09 1.5E-13 112.2 14.2 140 339-497 23-178 (325)
224 KOG0735 AAA+-type ATPase [Post 99.0 6.3E-09 1.4E-13 117.4 13.9 198 315-548 410-625 (952)
225 COG5271 MDN1 AAA ATPase contai 99.0 5.2E-09 1.1E-13 125.1 13.7 149 340-498 1543-1703(4600)
226 KOG1942 DNA helicase, TBP-inte 99.0 8E-09 1.7E-13 105.4 13.3 89 407-525 296-397 (456)
227 PRK08769 DNA polymerase III su 98.9 4.5E-09 9.8E-14 113.5 12.1 154 319-496 10-183 (319)
228 KOG2170 ATPase of the AAA+ sup 98.9 5.2E-09 1.1E-13 107.8 11.7 147 302-467 71-226 (344)
229 PRK06964 DNA polymerase III su 98.9 7.5E-09 1.6E-13 112.7 13.8 70 409-497 134-203 (342)
230 PRK07993 DNA polymerase III su 98.9 1.3E-08 2.9E-13 111.1 15.1 139 339-496 23-178 (334)
231 PF12775 AAA_7: P-loop contain 98.9 5.3E-09 1.2E-13 111.1 11.3 200 339-545 32-253 (272)
232 KOG0990 Replication factor C, 98.9 1.1E-09 2.3E-14 113.7 5.6 164 314-524 42-219 (360)
233 COG5271 MDN1 AAA ATPase contai 98.9 4.8E-08 1E-12 117.2 18.9 179 340-542 888-1076(4600)
234 COG3283 TyrR Transcriptional r 98.9 2.4E-08 5.3E-13 104.7 14.7 207 315-544 206-429 (511)
235 PRK06090 DNA polymerase III su 98.9 1.5E-08 3.3E-13 109.3 13.8 139 339-496 24-178 (319)
236 PRK08181 transposase; Validate 98.8 6E-08 1.3E-12 102.5 15.6 124 339-488 105-245 (269)
237 KOG1969 DNA replication checkp 98.8 5.3E-08 1.2E-12 110.7 15.6 164 339-529 325-502 (877)
238 TIGR00602 rad24 checkpoint pro 98.8 5.9E-08 1.3E-12 113.4 16.6 198 313-529 84-315 (637)
239 PRK10365 transcriptional regul 98.8 6.4E-08 1.4E-12 111.2 14.6 191 339-544 161-369 (441)
240 smart00382 AAA ATPases associa 98.8 2.1E-08 4.6E-13 94.7 8.8 133 340-483 2-145 (148)
241 COG3284 AcoR Transcriptional a 98.8 2.4E-08 5.1E-13 113.2 9.6 184 340-544 336-537 (606)
242 PRK08699 DNA polymerase III su 98.7 3.2E-08 6.9E-13 107.8 9.9 139 339-496 20-183 (325)
243 KOG0482 DNA replication licens 98.7 6.1E-08 1.3E-12 105.6 11.6 172 304-495 333-536 (721)
244 PF00493 MCM: MCM2/3/5 family 98.7 5.5E-09 1.2E-13 114.5 3.7 177 306-496 17-219 (331)
245 PRK08116 hypothetical protein; 98.7 3.5E-08 7.6E-13 104.8 9.0 126 340-487 114-251 (268)
246 TIGR03015 pepcterm_ATPase puta 98.7 5.4E-07 1.2E-11 96.2 17.9 185 340-554 43-249 (269)
247 PRK05917 DNA polymerase III su 98.7 3.3E-07 7.2E-12 97.1 15.0 128 339-485 18-154 (290)
248 PRK13406 bchD magnesium chelat 98.7 1.6E-07 3.5E-12 109.5 13.3 178 341-541 26-224 (584)
249 PRK06526 transposase; Provisio 98.7 1.1E-07 2.5E-12 99.9 10.6 126 339-490 97-239 (254)
250 COG2607 Predicted ATPase (AAA+ 98.6 7.1E-07 1.5E-11 89.5 14.6 173 314-528 61-259 (287)
251 KOG2680 DNA helicase TIP49, TB 98.6 8E-07 1.7E-11 91.3 15.0 113 407-554 288-412 (454)
252 PF01695 IstB_IS21: IstB-like 98.6 3.3E-08 7.2E-13 98.4 4.6 113 339-477 46-171 (178)
253 PRK12377 putative replication 98.6 5.8E-08 1.3E-12 101.4 6.2 122 340-486 101-236 (248)
254 PRK07276 DNA polymerase III su 98.6 1.7E-07 3.6E-12 99.7 9.6 153 317-496 6-173 (290)
255 PRK09183 transposase/IS protei 98.5 6.1E-08 1.3E-12 102.5 4.6 125 338-487 100-242 (259)
256 PF05621 TniB: Bacterial TniB 98.5 1.8E-06 3.9E-11 91.1 15.2 223 307-554 28-272 (302)
257 PF14532 Sigma54_activ_2: Sigm 98.5 6.9E-08 1.5E-12 92.2 3.3 125 317-485 2-138 (138)
258 PF03215 Rad17: Rad17 cell cyc 98.5 3.7E-06 8.1E-11 96.8 17.5 200 321-543 27-264 (519)
259 KOG0481 DNA replication licens 98.5 5.7E-07 1.2E-11 98.3 9.9 180 306-499 324-528 (729)
260 KOG0477 DNA replication licens 98.5 1.7E-07 3.6E-12 104.6 6.0 154 311-479 447-625 (854)
261 PRK07132 DNA polymerase III su 98.5 4.2E-06 9.2E-11 89.9 16.5 136 339-496 17-160 (299)
262 PF13173 AAA_14: AAA domain 98.5 1E-06 2.3E-11 82.8 10.3 118 340-489 2-126 (128)
263 KOG2227 Pre-initiation complex 98.4 1.7E-06 3.6E-11 94.6 12.6 210 314-554 151-381 (529)
264 PRK05818 DNA polymerase III su 98.4 4.9E-07 1.1E-11 93.8 7.1 128 339-485 6-147 (261)
265 PRK07952 DNA replication prote 98.4 3.4E-07 7.3E-12 95.4 6.0 123 341-486 100-235 (244)
266 COG4650 RtcR Sigma54-dependent 98.4 9.3E-07 2E-11 90.5 8.9 142 340-492 208-366 (531)
267 PRK06835 DNA replication prote 98.4 3.3E-07 7.1E-12 99.8 5.8 125 340-487 183-319 (329)
268 PF06309 Torsin: Torsin; Inte 98.4 8.3E-07 1.8E-11 81.4 7.1 63 302-364 14-77 (127)
269 KOG1514 Origin recognition com 98.4 9.8E-06 2.1E-10 92.7 16.9 203 315-548 398-625 (767)
270 KOG0741 AAA+-type ATPase [Post 98.4 3.5E-06 7.7E-11 92.8 12.5 133 341-497 539-685 (744)
271 COG1484 DnaC DNA replication p 98.3 6.6E-07 1.4E-11 94.2 6.3 104 339-467 104-210 (254)
272 PF12774 AAA_6: Hydrolytic ATP 98.3 2.2E-06 4.7E-11 88.7 8.3 132 341-494 33-176 (231)
273 KOG0479 DNA replication licens 98.3 4.1E-06 8.9E-11 93.1 10.3 161 307-487 295-487 (818)
274 PF00910 RNA_helicase: RNA hel 98.2 1.3E-06 2.9E-11 79.3 5.2 107 343-465 1-107 (107)
275 PRK06921 hypothetical protein; 98.2 2.1E-06 4.5E-11 91.2 7.3 123 339-486 116-255 (266)
276 PRK15455 PrkA family serine pr 98.1 3.4E-06 7.4E-11 95.8 6.1 61 312-372 75-136 (644)
277 PF01637 Arch_ATPase: Archaeal 98.1 1.5E-05 3.2E-10 82.7 10.6 185 316-529 2-226 (234)
278 COG0464 SpoVK ATPases of the A 98.1 2.3E-05 5E-10 91.3 13.1 177 338-554 16-203 (494)
279 PRK08939 primosomal protein Dn 98.1 1.3E-05 2.9E-10 86.7 9.7 74 339-421 155-231 (306)
280 PF13401 AAA_22: AAA domain; P 98.1 3.5E-06 7.6E-11 79.3 4.4 91 340-436 4-113 (131)
281 TIGR02688 conserved hypothetic 98.0 1.7E-05 3.7E-10 87.4 9.7 83 339-438 208-291 (449)
282 KOG1970 Checkpoint RAD17-RFC c 98.0 7.5E-05 1.6E-09 83.3 14.1 38 335-372 105-142 (634)
283 PHA00729 NTP-binding motif con 97.9 1.5E-05 3.2E-10 81.4 6.5 119 341-497 18-139 (226)
284 KOG1051 Chaperone HSP104 and r 97.9 4.1E-05 9E-10 91.6 10.8 154 314-497 187-362 (898)
285 KOG1808 AAA ATPase containing 97.9 4.2E-05 9E-10 97.1 10.3 147 341-497 441-598 (1856)
286 PF05729 NACHT: NACHT domain 97.9 9.6E-05 2.1E-09 72.2 10.6 141 342-498 2-163 (166)
287 PHA02774 E1; Provisional 97.8 0.00018 4E-09 82.2 13.0 120 338-485 432-555 (613)
288 PRK06581 DNA polymerase III su 97.7 0.00015 3.4E-09 73.8 9.9 138 340-498 15-161 (263)
289 COG1618 Predicted nucleotide k 97.7 8.6E-05 1.9E-09 70.5 6.9 25 342-366 7-31 (179)
290 COG1116 TauB ABC-type nitrate/ 97.7 3.5E-05 7.5E-10 78.9 4.3 38 338-375 27-64 (248)
291 PF05272 VirE: Virulence-assoc 97.6 0.00038 8.2E-09 70.4 10.3 115 341-484 53-169 (198)
292 PF00931 NB-ARC: NB-ARC domain 97.6 0.00037 8E-09 75.1 10.9 154 319-498 2-170 (287)
293 PRK12723 flagellar biosynthesi 97.6 0.0024 5.3E-08 71.1 17.4 82 339-422 173-269 (388)
294 PF03969 AFG1_ATPase: AFG1-lik 97.6 7.4E-05 1.6E-09 82.6 5.1 127 338-485 60-201 (362)
295 TIGR03499 FlhF flagellar biosy 97.5 0.0022 4.7E-08 69.0 15.3 38 339-376 193-235 (282)
296 PRK12726 flagellar biosynthesi 97.5 0.0022 4.7E-08 70.3 14.9 104 318-421 180-299 (407)
297 COG4619 ABC-type uncharacteriz 97.5 0.0003 6.5E-09 67.2 7.0 38 338-375 27-64 (223)
298 KOG2228 Origin recognition com 97.4 0.00074 1.6E-08 71.5 10.2 166 316-498 27-219 (408)
299 PRK05703 flhF flagellar biosyn 97.4 0.0076 1.6E-07 68.4 18.5 94 339-436 220-326 (424)
300 PF13207 AAA_17: AAA domain; P 97.4 0.00014 3E-09 67.4 3.8 30 342-371 1-30 (121)
301 PF08298 AAA_PrkA: PrkA AAA do 97.4 0.00029 6.3E-09 76.0 6.2 60 312-371 60-120 (358)
302 KOG1968 Replication factor C, 97.3 0.00083 1.8E-08 81.4 10.6 154 342-527 359-521 (871)
303 COG3267 ExeA Type II secretory 97.3 0.0045 9.7E-08 63.6 14.1 187 340-554 51-256 (269)
304 PF03266 NTPase_1: NTPase; In 97.3 0.00062 1.3E-08 67.1 7.6 23 342-364 1-23 (168)
305 PRK14722 flhF flagellar biosyn 97.3 0.0061 1.3E-07 67.4 15.8 82 338-421 135-229 (374)
306 PF13604 AAA_30: AAA domain; P 97.3 0.00048 1E-08 69.8 6.7 89 339-436 17-118 (196)
307 TIGR01613 primase_Cterm phage/ 97.3 0.0021 4.5E-08 70.0 11.6 154 310-484 46-203 (304)
308 PHA02624 large T antigen; Prov 97.2 0.0013 2.8E-08 75.7 9.6 124 338-484 429-561 (647)
309 KOG3347 Predicted nucleotide k 97.2 0.00034 7.3E-09 65.4 3.7 34 338-371 5-38 (176)
310 cd01131 PilT Pilus retraction 97.1 0.00079 1.7E-08 68.4 6.5 25 342-366 3-27 (198)
311 PF10431 ClpB_D2-small: C-term 97.1 0.00034 7.5E-09 60.0 3.1 78 485-586 1-81 (81)
312 COG3854 SpoIIIAA ncharacterize 97.1 0.0023 4.9E-08 64.4 8.9 24 341-364 138-161 (308)
313 PRK04296 thymidine kinase; Pro 97.1 0.0019 4.1E-08 65.2 8.7 32 340-371 2-36 (190)
314 PRK00131 aroK shikimate kinase 97.1 0.00053 1.2E-08 67.8 4.5 32 339-370 3-34 (175)
315 PRK10536 hypothetical protein; 97.1 0.0032 6.9E-08 65.6 10.1 23 341-363 75-97 (262)
316 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.00071 1.5E-08 65.0 5.0 88 338-436 24-114 (144)
317 PRK08118 topology modulation p 97.1 0.00052 1.1E-08 67.7 4.1 31 342-372 3-33 (167)
318 COG5245 DYN1 Dynein, heavy cha 97.0 0.0011 2.4E-08 80.9 7.4 154 339-499 1493-1659(3164)
319 PF07693 KAP_NTPase: KAP famil 97.0 0.0071 1.5E-07 66.4 13.3 117 410-544 175-319 (325)
320 PF13191 AAA_16: AAA ATPase do 97.0 0.00045 9.8E-09 68.9 3.4 58 315-375 2-62 (185)
321 cd01120 RecA-like_NTPases RecA 97.0 0.0013 2.8E-08 63.8 6.4 34 342-375 1-37 (165)
322 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0012 2.7E-08 65.5 6.1 38 338-375 23-60 (177)
323 cd03216 ABC_Carb_Monos_I This 97.0 0.001 2.2E-08 65.3 5.4 38 338-375 24-61 (163)
324 PF14516 AAA_35: AAA-like doma 97.0 0.028 6E-07 61.9 16.9 168 338-528 29-230 (331)
325 cd01130 VirB11-like_ATPase Typ 96.9 0.0028 6.2E-08 63.7 8.4 35 339-373 24-58 (186)
326 cd01128 rho_factor Transcripti 96.9 0.0019 4.1E-08 67.8 7.3 31 336-366 12-42 (249)
327 PRK07261 topology modulation p 96.9 0.0014 3E-08 65.0 5.8 30 342-371 2-31 (171)
328 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0011 2.4E-08 64.6 4.8 38 338-375 23-60 (157)
329 TIGR01618 phage_P_loop phage n 96.9 0.0012 2.6E-08 67.7 5.2 22 340-361 12-33 (220)
330 PRK11889 flhF flagellar biosyn 96.9 0.0061 1.3E-07 67.2 10.6 83 339-421 240-334 (436)
331 PF00519 PPV_E1_C: Papillomavi 96.9 0.003 6.5E-08 68.6 8.1 120 338-485 260-383 (432)
332 PRK00625 shikimate kinase; Pro 96.9 0.00097 2.1E-08 66.1 4.0 31 342-372 2-32 (173)
333 PF12780 AAA_8: P-loop contain 96.9 0.0069 1.5E-07 64.3 10.7 165 318-499 13-211 (268)
334 PRK03839 putative kinase; Prov 96.8 0.00095 2E-08 66.7 4.0 30 342-371 2-31 (180)
335 cd00227 CPT Chloramphenicol (C 96.8 0.00099 2.1E-08 66.3 4.0 34 340-373 2-35 (175)
336 PF13671 AAA_33: AAA domain; P 96.8 0.0012 2.6E-08 63.0 4.4 30 342-373 1-30 (143)
337 PRK06995 flhF flagellar biosyn 96.8 0.046 9.9E-07 62.6 17.6 37 339-375 255-296 (484)
338 PRK13947 shikimate kinase; Pro 96.8 0.0011 2.4E-08 65.5 4.0 31 342-372 3-33 (171)
339 COG3842 PotA ABC-type spermidi 96.8 0.00096 2.1E-08 72.7 3.8 38 338-375 29-66 (352)
340 TIGR01420 pilT_fam pilus retra 96.8 0.0029 6.3E-08 70.0 7.5 78 339-417 121-205 (343)
341 PRK12727 flagellar biosynthesi 96.8 0.028 6E-07 64.5 15.3 83 338-421 348-442 (559)
342 PRK13695 putative NTPase; Prov 96.8 0.0056 1.2E-07 60.7 8.8 23 342-364 2-24 (174)
343 cd03246 ABCC_Protease_Secretio 96.7 0.0018 3.9E-08 64.3 5.0 38 338-375 26-63 (173)
344 cd00464 SK Shikimate kinase (S 96.7 0.0013 2.9E-08 63.6 4.0 30 342-371 1-30 (154)
345 COG1373 Predicted ATPase (AAA+ 96.7 0.0089 1.9E-07 67.4 11.1 119 342-492 39-161 (398)
346 COG4178 ABC-type uncharacteriz 96.7 0.0038 8.2E-08 72.3 8.2 37 338-374 417-453 (604)
347 PLN03210 Resistant to P. syrin 96.7 0.0051 1.1E-07 79.1 10.3 51 313-367 184-234 (1153)
348 PF13245 AAA_19: Part of AAA d 96.7 0.0023 5.1E-08 54.0 4.8 25 340-364 10-35 (76)
349 cd03228 ABCC_MRP_Like The MRP 96.7 0.0019 4.1E-08 64.0 4.8 38 338-375 26-63 (171)
350 COG0703 AroK Shikimate kinase 96.7 0.0014 2.9E-08 64.0 3.6 32 341-372 3-34 (172)
351 PRK14530 adenylate kinase; Pro 96.7 0.0016 3.5E-08 67.1 4.3 30 340-369 3-32 (215)
352 TIGR02788 VirB11 P-type DNA tr 96.7 0.0048 1E-07 67.2 8.2 34 339-372 143-176 (308)
353 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0067 1.5E-07 64.5 8.9 28 339-366 79-106 (264)
354 PRK13949 shikimate kinase; Pro 96.6 0.0016 3.5E-08 64.3 3.8 31 342-372 3-33 (169)
355 PF05707 Zot: Zonular occluden 96.6 0.0089 1.9E-07 60.4 9.2 125 342-482 2-143 (193)
356 KOG2543 Origin recognition com 96.6 0.0078 1.7E-07 65.0 8.8 63 311-376 4-66 (438)
357 COG1120 FepC ABC-type cobalami 96.6 0.0014 3.1E-08 68.3 3.2 38 338-375 26-63 (258)
358 COG1102 Cmk Cytidylate kinase 96.6 0.002 4.3E-08 61.4 3.8 29 342-370 2-30 (179)
359 PRK08233 hypothetical protein; 96.6 0.0046 9.9E-08 61.6 6.8 26 340-365 3-28 (182)
360 PRK14532 adenylate kinase; Pro 96.6 0.0018 3.9E-08 65.1 3.8 28 342-369 2-29 (188)
361 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0017 3.8E-08 64.9 3.7 32 342-375 1-32 (183)
362 PRK06696 uridine kinase; Valid 96.6 0.0045 9.7E-08 64.2 6.8 40 339-378 21-63 (223)
363 PRK06762 hypothetical protein; 96.6 0.0024 5.1E-08 62.8 4.6 32 341-372 3-34 (166)
364 PHA01747 putative ATP-dependen 96.6 0.0068 1.5E-07 65.3 8.2 82 339-436 189-271 (425)
365 cd03223 ABCD_peroxisomal_ALDP 96.6 0.0039 8.4E-08 61.4 5.9 36 338-373 25-60 (166)
366 COG3839 MalK ABC-type sugar tr 96.5 0.0019 4.1E-08 70.1 3.8 38 338-375 27-64 (338)
367 PF00437 T2SE: Type II/IV secr 96.5 0.0051 1.1E-07 65.7 7.1 79 339-418 126-208 (270)
368 PRK08154 anaerobic benzoate ca 96.5 0.017 3.6E-07 63.0 11.1 34 338-371 131-164 (309)
369 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0027 5.8E-08 63.6 4.5 29 340-368 3-31 (188)
370 PRK06217 hypothetical protein; 96.5 0.0024 5.1E-08 64.1 4.1 30 342-371 3-32 (183)
371 TIGR00767 rho transcription te 96.5 0.0061 1.3E-07 67.4 7.5 30 338-367 166-195 (415)
372 COG1485 Predicted ATPase [Gene 96.5 0.0053 1.1E-07 65.9 6.8 29 338-366 63-91 (367)
373 PRK14531 adenylate kinase; Pro 96.5 0.0026 5.7E-08 63.7 4.3 29 342-370 4-32 (183)
374 cd03214 ABC_Iron-Siderophores_ 96.5 0.0046 1E-07 61.7 6.0 38 338-375 23-60 (180)
375 cd02020 CMPK Cytidine monophos 96.5 0.0024 5.1E-08 61.1 3.7 30 343-372 2-31 (147)
376 cd02021 GntK Gluconate kinase 96.5 0.0023 5E-08 61.7 3.5 26 343-368 2-27 (150)
377 PRK13948 shikimate kinase; Pro 96.5 0.0032 6.8E-08 62.9 4.6 35 338-372 8-42 (182)
378 PRK14723 flhF flagellar biosyn 96.4 0.031 6.7E-07 67.0 13.4 82 339-422 184-278 (767)
379 cd02019 NK Nucleoside/nucleoti 96.4 0.0044 9.5E-08 51.3 4.6 22 343-364 2-23 (69)
380 PTZ00202 tuzin; Provisional 96.4 0.022 4.7E-07 63.3 11.1 59 314-375 263-321 (550)
381 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0043 9.4E-08 58.3 4.9 30 338-367 20-49 (133)
382 COG0563 Adk Adenylate kinase a 96.4 0.003 6.5E-08 62.8 4.1 27 342-368 2-28 (178)
383 COG1936 Predicted nucleotide k 96.4 0.0024 5.2E-08 61.8 3.0 29 342-371 2-30 (180)
384 TIGR01313 therm_gnt_kin carboh 96.4 0.0025 5.5E-08 62.4 3.2 26 343-368 1-26 (163)
385 PRK05057 aroK shikimate kinase 96.4 0.0038 8.3E-08 61.9 4.5 33 340-372 4-36 (172)
386 PRK14737 gmk guanylate kinase; 96.3 0.0085 1.8E-07 60.2 6.9 27 339-365 3-29 (186)
387 PRK09376 rho transcription ter 96.3 0.0036 7.8E-08 68.9 4.4 31 336-366 165-195 (416)
388 cd01428 ADK Adenylate kinase ( 96.3 0.003 6.5E-08 63.7 3.6 27 343-369 2-28 (194)
389 PRK14527 adenylate kinase; Pro 96.3 0.0032 6.8E-08 63.6 3.8 32 338-369 4-35 (191)
390 COG1124 DppF ABC-type dipeptid 96.3 0.0034 7.4E-08 64.0 3.8 39 338-376 31-69 (252)
391 COG1126 GlnQ ABC-type polar am 96.3 0.0036 7.8E-08 62.7 3.7 38 338-375 26-63 (240)
392 PRK13900 type IV secretion sys 96.3 0.018 4E-07 63.1 9.6 33 339-371 159-191 (332)
393 PF13479 AAA_24: AAA domain 96.3 0.0092 2E-07 61.4 6.9 75 340-420 3-81 (213)
394 TIGR02858 spore_III_AA stage I 96.3 0.0067 1.4E-07 64.5 5.9 35 341-375 112-146 (270)
395 PRK06547 hypothetical protein; 96.2 0.0043 9.4E-08 61.4 4.1 31 339-369 14-44 (172)
396 PRK13833 conjugal transfer pro 96.2 0.013 2.7E-07 63.9 7.9 25 340-364 144-168 (323)
397 COG4133 CcmA ABC-type transpor 96.2 0.021 4.6E-07 56.0 8.6 38 338-375 26-63 (209)
398 TIGR02237 recomb_radB DNA repa 96.2 0.0079 1.7E-07 61.6 6.1 38 338-375 10-50 (209)
399 PRK00771 signal recognition pa 96.2 0.09 2E-06 59.7 15.0 81 339-421 94-189 (437)
400 PTZ00088 adenylate kinase 1; P 96.2 0.0048 1E-07 64.0 4.4 29 341-369 7-35 (229)
401 PF01745 IPT: Isopentenyl tran 96.2 0.0056 1.2E-07 61.4 4.6 31 342-372 3-33 (233)
402 COG1134 TagH ABC-type polysacc 96.2 0.0097 2.1E-07 60.9 6.4 39 338-376 51-89 (249)
403 PRK03731 aroL shikimate kinase 96.2 0.005 1.1E-07 60.9 4.2 31 342-372 4-34 (171)
404 KOG0058 Peptide exporter, ABC 96.2 0.014 2.9E-07 68.3 8.2 38 338-375 492-529 (716)
405 PF04665 Pox_A32: Poxvirus A32 96.2 0.038 8.3E-07 57.3 10.8 136 341-497 14-169 (241)
406 PRK14528 adenylate kinase; Pro 96.2 0.0048 1E-07 62.0 4.1 28 342-369 3-30 (186)
407 PRK12724 flagellar biosynthesi 96.2 0.093 2E-06 58.8 14.4 37 340-376 223-263 (432)
408 PRK04040 adenylate kinase; Pro 96.2 0.0055 1.2E-07 61.7 4.4 35 341-375 3-37 (188)
409 PF13238 AAA_18: AAA domain; P 96.2 0.0038 8.3E-08 58.1 3.1 22 343-364 1-22 (129)
410 PRK13946 shikimate kinase; Pro 96.1 0.0048 1E-07 61.9 3.9 33 340-372 10-42 (184)
411 PRK02496 adk adenylate kinase; 96.1 0.0049 1.1E-07 61.7 4.0 28 342-369 3-30 (184)
412 PF10923 DUF2791: P-loop Domai 96.1 0.13 2.9E-06 57.6 15.5 121 398-533 230-377 (416)
413 TIGR02525 plasmid_TraJ plasmid 96.1 0.0073 1.6E-07 67.1 5.6 25 341-365 150-174 (372)
414 PRK10416 signal recognition pa 96.1 0.067 1.4E-06 58.4 12.9 27 339-365 113-139 (318)
415 COG4175 ProV ABC-type proline/ 96.1 0.012 2.6E-07 62.2 6.6 35 338-372 52-86 (386)
416 PLN02200 adenylate kinase fami 96.1 0.0053 1.2E-07 64.0 4.2 34 340-375 43-76 (234)
417 PRK13851 type IV secretion sys 96.1 0.019 4.1E-07 63.2 8.5 34 339-372 161-194 (344)
418 PRK05800 cobU adenosylcobinami 96.1 0.016 3.5E-07 57.2 7.3 79 342-420 3-89 (170)
419 PRK14700 recombination factor 96.1 0.02 4.4E-07 60.7 8.3 72 455-530 7-80 (300)
420 COG2274 SunT ABC-type bacterio 96.1 0.006 1.3E-07 73.2 5.0 38 338-375 497-534 (709)
421 smart00464 LON Found in ATP-de 96.1 0.0051 1.1E-07 54.1 3.3 39 151-189 54-92 (92)
422 PRK10078 ribose 1,5-bisphospho 96.1 0.0051 1.1E-07 61.8 3.7 28 340-367 2-29 (186)
423 TIGR00235 udk uridine kinase. 96.1 0.0064 1.4E-07 62.2 4.5 38 338-375 4-42 (207)
424 PRK13894 conjugal transfer ATP 96.1 0.016 3.6E-07 63.1 7.8 26 339-364 147-172 (319)
425 TIGR02782 TrbB_P P-type conjug 96.0 0.024 5.2E-07 61.4 9.0 26 340-365 132-157 (299)
426 COG1125 OpuBA ABC-type proline 96.0 0.0041 8.9E-08 63.7 2.7 39 338-376 25-63 (309)
427 TIGR00064 ftsY signal recognit 96.0 0.067 1.5E-06 57.1 12.0 37 339-375 71-110 (272)
428 TIGR02322 phosphon_PhnN phosph 96.0 0.0056 1.2E-07 61.0 3.6 26 341-366 2-27 (179)
429 PRK13764 ATPase; Provisional 96.0 0.011 2.3E-07 69.3 6.4 29 339-367 256-284 (602)
430 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.0062 1.4E-07 62.8 4.0 38 338-375 28-65 (218)
431 TIGR01351 adk adenylate kinase 95.9 0.0064 1.4E-07 62.4 3.8 28 343-370 2-29 (210)
432 PRK09825 idnK D-gluconate kina 95.9 0.0078 1.7E-07 59.9 4.3 28 339-366 2-29 (176)
433 PRK05480 uridine/cytidine kina 95.9 0.0099 2.1E-07 60.9 5.2 37 339-375 5-42 (209)
434 PRK14974 cell division protein 95.9 0.023 4.9E-07 62.3 8.2 37 339-375 139-178 (336)
435 PRK04220 2-phosphoglycerate ki 95.9 0.025 5.4E-07 60.5 8.2 30 338-367 90-119 (301)
436 TIGR03574 selen_PSTK L-seryl-t 95.9 0.0071 1.5E-07 63.8 4.1 23 343-365 2-24 (249)
437 cd03283 ABC_MutS-like MutS-lik 95.9 0.017 3.6E-07 58.7 6.6 25 340-364 25-49 (199)
438 TIGR02533 type_II_gspE general 95.9 0.02 4.4E-07 66.1 8.0 28 339-366 241-268 (486)
439 PRK05541 adenylylsulfate kinas 95.9 0.0072 1.6E-07 60.1 3.8 29 338-366 5-33 (176)
440 PF08433 KTI12: Chromatin asso 95.9 0.0068 1.5E-07 64.4 3.8 77 341-423 2-86 (270)
441 PLN02674 adenylate kinase 95.9 0.014 2.9E-07 61.0 5.8 34 340-375 31-64 (244)
442 PRK00279 adk adenylate kinase; 95.9 0.0075 1.6E-07 62.1 3.9 29 342-370 2-30 (215)
443 PF09848 DUF2075: Uncharacteri 95.8 0.023 5E-07 63.2 8.0 24 341-364 2-25 (352)
444 PRK12608 transcription termina 95.8 0.016 3.4E-07 63.8 6.4 30 337-366 130-159 (380)
445 PRK04182 cytidylate kinase; Pr 95.8 0.0084 1.8E-07 59.5 4.0 29 342-370 2-30 (180)
446 TIGR00960 3a0501s02 Type II (G 95.8 0.0083 1.8E-07 61.8 4.1 38 338-375 27-64 (216)
447 PF00005 ABC_tran: ABC transpo 95.8 0.0051 1.1E-07 58.2 2.3 38 338-375 9-46 (137)
448 PLN02165 adenylate isopentenyl 95.8 0.0084 1.8E-07 65.0 4.1 32 338-369 41-72 (334)
449 PRK08485 DNA polymerase III su 95.8 0.075 1.6E-06 53.1 10.3 68 410-496 57-137 (206)
450 COG2804 PulE Type II secretory 95.8 0.031 6.8E-07 63.1 8.6 77 339-418 257-338 (500)
451 cd02027 APSK Adenosine 5'-phos 95.8 0.011 2.3E-07 57.2 4.4 23 342-364 1-23 (149)
452 PRK14709 hypothetical protein; 95.8 0.072 1.6E-06 61.3 11.8 157 309-485 174-334 (469)
453 PRK14721 flhF flagellar biosyn 95.8 0.21 4.6E-06 56.3 15.2 27 338-364 189-215 (420)
454 KOG3595 Dyneins, heavy chain [ 95.8 0.029 6.2E-07 73.0 9.5 147 341-498 128-286 (1395)
455 cd03269 ABC_putative_ATPase Th 95.7 0.009 2E-07 61.2 4.0 38 338-375 24-61 (210)
456 COG4088 Predicted nucleotide k 95.7 0.008 1.7E-07 59.6 3.3 28 341-368 2-29 (261)
457 COG2805 PilT Tfp pilus assembl 95.7 0.024 5.2E-07 59.6 6.9 77 339-418 124-209 (353)
458 TIGR01425 SRP54_euk signal rec 95.7 0.21 4.5E-06 56.4 14.9 38 340-377 100-140 (429)
459 cd03261 ABC_Org_Solvent_Resist 95.7 0.0093 2E-07 62.3 4.0 38 338-375 24-61 (235)
460 TIGR01166 cbiO cobalt transpor 95.7 0.0094 2E-07 60.0 3.9 38 338-375 16-53 (190)
461 PRK08533 flagellar accessory p 95.7 0.018 3.9E-07 59.9 6.0 35 338-372 22-59 (230)
462 PF01583 APS_kinase: Adenylyls 95.7 0.013 2.8E-07 56.7 4.6 37 340-376 2-41 (156)
463 PRK00889 adenylylsulfate kinas 95.7 0.0095 2.1E-07 59.1 3.8 28 338-365 2-29 (175)
464 cd00544 CobU Adenosylcobinamid 95.7 0.037 8E-07 54.6 7.8 77 343-420 2-86 (169)
465 TIGR01448 recD_rel helicase, p 95.7 0.023 5E-07 69.0 7.7 25 341-365 339-363 (720)
466 TIGR03608 L_ocin_972_ABC putat 95.7 0.01 2.2E-07 60.6 4.0 38 338-375 22-59 (206)
467 cd03292 ABC_FtsE_transporter F 95.7 0.01 2.3E-07 60.9 4.1 38 338-375 25-62 (214)
468 PF01443 Viral_helicase1: Vira 95.7 0.014 3E-07 60.7 5.1 22 343-364 1-22 (234)
469 cd03258 ABC_MetN_methionine_tr 95.7 0.0092 2E-07 62.2 3.8 38 338-375 29-66 (233)
470 TIGR02524 dot_icm_DotB Dot/Icm 95.7 0.025 5.4E-07 62.7 7.3 26 339-364 133-158 (358)
471 PRK14526 adenylate kinase; Pro 95.7 0.011 2.4E-07 60.6 4.2 27 342-368 2-28 (211)
472 PF00448 SRP54: SRP54-type pro 95.7 0.013 2.8E-07 59.3 4.7 36 341-376 2-40 (196)
473 PRK13541 cytochrome c biogenes 95.7 0.011 2.3E-07 60.0 4.0 38 338-375 24-61 (195)
474 cd03225 ABC_cobalt_CbiO_domain 95.7 0.0096 2.1E-07 61.0 3.8 38 338-375 25-62 (211)
475 cd03262 ABC_HisP_GlnQ_permease 95.6 0.0098 2.1E-07 61.0 3.8 38 338-375 24-61 (213)
476 cd03229 ABC_Class3 This class 95.6 0.011 2.4E-07 58.9 4.1 38 338-375 24-61 (178)
477 PRK10436 hypothetical protein; 95.6 0.04 8.8E-07 63.0 9.0 29 339-367 217-245 (462)
478 PRK00300 gmk guanylate kinase; 95.6 0.0098 2.1E-07 60.6 3.8 28 338-365 3-30 (205)
479 cd03226 ABC_cobalt_CbiO_domain 95.6 0.011 2.3E-07 60.4 4.0 38 338-375 24-61 (205)
480 cd03260 ABC_PstB_phosphate_tra 95.6 0.014 3.1E-07 60.5 5.0 38 338-375 24-66 (227)
481 TIGR02315 ABC_phnC phosphonate 95.6 0.011 2.3E-07 62.2 4.0 38 338-375 26-63 (243)
482 COG2074 2-phosphoglycerate kin 95.6 0.05 1.1E-06 55.8 8.5 42 328-369 77-118 (299)
483 smart00072 GuKc Guanylate kina 95.6 0.045 9.7E-07 54.8 8.4 25 341-365 3-27 (184)
484 PF00406 ADK: Adenylate kinase 95.6 0.0092 2E-07 57.7 3.3 29 345-375 1-29 (151)
485 TIGR02673 FtsE cell division A 95.6 0.011 2.3E-07 60.9 3.9 38 338-375 26-63 (214)
486 COG1419 FlhF Flagellar GTP-bin 95.6 0.028 6.1E-07 62.0 7.2 82 339-422 202-296 (407)
487 PRK11629 lolD lipoprotein tran 95.6 0.012 2.5E-07 61.5 4.1 38 338-375 33-70 (233)
488 cd03301 ABC_MalK_N The N-termi 95.6 0.012 2.5E-07 60.5 4.1 38 338-375 24-61 (213)
489 cd03247 ABCC_cytochrome_bd The 95.6 0.012 2.5E-07 58.7 4.0 38 338-375 26-63 (178)
490 TIGR03263 guanyl_kin guanylate 95.6 0.0085 1.8E-07 59.7 3.0 27 340-366 1-27 (180)
491 PF13555 AAA_29: P-loop contai 95.6 0.016 3.4E-07 46.7 3.8 25 340-364 23-47 (62)
492 cd02023 UMPK Uridine monophosp 95.6 0.015 3.2E-07 59.0 4.7 33 343-375 2-35 (198)
493 TIGR03410 urea_trans_UrtE urea 95.6 0.01 2.2E-07 61.8 3.5 38 338-375 24-61 (230)
494 PRK05439 pantothenate kinase; 95.5 0.047 1E-06 59.0 8.7 39 339-377 85-128 (311)
495 cd03293 ABC_NrtD_SsuB_transpor 95.5 0.011 2.5E-07 61.0 3.9 38 338-375 28-65 (220)
496 COG1136 SalX ABC-type antimicr 95.5 0.01 2.2E-07 60.9 3.3 38 338-375 29-66 (226)
497 cd03263 ABC_subfamily_A The AB 95.5 0.011 2.4E-07 60.9 3.8 38 338-375 26-63 (220)
498 PF10443 RNA12: RNA12 protein; 95.5 0.36 7.7E-06 53.9 15.5 82 406-500 147-231 (431)
499 TIGR02211 LolD_lipo_ex lipopro 95.5 0.011 2.4E-07 61.0 3.8 38 338-375 29-66 (221)
500 cd03256 ABC_PhnC_transporter A 95.5 0.011 2.5E-07 61.8 3.9 38 338-375 25-62 (241)
No 1
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-132 Score=1097.71 Aligned_cols=723 Identities=50% Similarity=0.806 Sum_probs=683.4
Q ss_pred cCCCCCCCCCCccccccceeEEEEEEeccCccCCCCceEEEEEEEEeeEEEEeeecccCCeEEEEEEEeccchhhhhccC
Q 003349 31 VGASDGKNQQEVIHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGTYYTARISSLEMTKIEMEQVE 110 (828)
Q Consensus 31 ~~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~~~~dG~~~~~I~~~G~~RfrI~~~~~~~~y~~a~Ve~l~~~~~~~~~~~ 110 (828)
.|+....++|.++++|+|||+|+|.++.++ ||| ++.|.++|.+|++|.++...+.|..|+++.+++ ++.+
T Consensus 54 ~qk~~~~d~p~~~dly~vGt~a~I~q~~~l---pdg--~~kvlveg~~R~~I~~~~~~~~~~~a~~~~i~~-----~~~~ 123 (782)
T COG0466 54 TQKDASTDEPTEDDLYEVGTLAKILQILKL---PDG--TVKVLVEGLQRVRISKLSDEEEFFEAEIELLPD-----EPID 123 (782)
T ss_pred EecccccCCCChhhhhhcchheeeeeeeeC---CCC--cEEEEEEeeeeEEEEeeccCCCceEEEEEecCC-----Cccc
Confidence 445455666788899999999999999999 999 889999999999999999888899999999985 2222
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhccCchhhHHHhhccCChHHHHHHHHHcCCCCHHHHHHHhhccCHHHHHHHHHHHH
Q 003349 111 QDPDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELV 190 (828)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~~la~~lpl~~~~kq~LLe~~d~~~Rl~~l~~~l 190 (828)
...+..++.+.+...|.+|...... ..+.....+..+++++.+||.+|++++++.++||++|++.+...||+.++.+|
T Consensus 124 ~~~~~~al~~~i~~~~~~~~~l~~~--~~~e~l~~~~~i~~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l 201 (782)
T COG0466 124 EEREIEALVRSILSEFEEYAKLNKK--IPPEELQSLNSIDDPGKLADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLL 201 (782)
T ss_pred chhHHHHHHHHHHHHHHHHHHhccC--CCHHHHHHHhcccchHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2456788999999999999887742 34445555668899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHh
Q 003349 191 DRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIWKHVQKELRRLKK 270 (828)
Q Consensus 191 ~~~~~~l~~~~~i~~~i~~~~~~~~r~~~l~~ql~~l~~~~~~~~~~~~~~~~~~~~l~~~~lp~~a~~~~~~e~~~l~~ 270 (828)
..++..++++++|+++++.+++++||+|||+||++.||+|+|..++..++++++++++++..||+++.+.+..|++++++
T Consensus 202 ~~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evk~k~~~El~kL~~ 281 (782)
T COG0466 202 EKEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLET 281 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988766789999999999999999999999999999999
Q ss_pred cCCCCCCcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCC
Q 003349 271 MQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPG 350 (828)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppG 350 (828)
+.+.+++++.+|+|++|++.+||...+.. ..|+..++++|+.+|||++++|++|+++++...+.+..+|+++||+||||
T Consensus 282 m~~~SaE~~ViRnYlDwll~lPW~~~sk~-~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPG 360 (782)
T COG0466 282 MSPMSAEATVIRNYLDWLLDLPWGKRSKD-KLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPG 360 (782)
T ss_pred CCCCCchHHHHHHHHHHHHhCCCccccch-hhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCC
Confidence 99999999999999999999999999988 99999999999999999999999999999999998889999999999999
Q ss_pred CchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHH
Q 003349 351 VGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASA 430 (828)
Q Consensus 351 tGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~ 430 (828)
+|||+|+++||+.+++.|++++++|.+|+++++||+++|+|++||++.+.++++...|||++|||||+++.+.+|||.++
T Consensus 361 VGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSA 440 (782)
T COG0466 361 VGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASA 440 (782)
T ss_pred CCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCC
Q 003349 431 LLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGS 510 (828)
Q Consensus 431 Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~ 510 (828)
||++||++||..|.|||+..++|+++|+||+|+|..+.+|.+|+||+++|.++.|+.+|+.+|+++||.|++++.+|+.+
T Consensus 441 LLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~ 520 (782)
T COG0466 441 LLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKK 520 (782)
T ss_pred HHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeecc
Q 003349 511 EFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIP 590 (828)
Q Consensus 511 ~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 590 (828)
..+.++++++..|++.|++++|+|+|+|.|..+||+++..++.+..
T Consensus 521 ~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~---------------------------------- 566 (782)
T COG0466 521 GELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKE---------------------------------- 566 (782)
T ss_pred cceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCc----------------------------------
Confidence 9999999999999999999999999999999999999999887610
Q ss_pred CCCcccccccccccCcceeecccchhhccCCCccCchhhhhhcCCCceeEEEEEeecCceEEEEEEEEEcCcceEEEeeC
Q 003349 591 MGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQ 670 (828)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~i~~~~L~~~l~~~~~~~~~~~~~~~~~G~v~g~~~~~~~g~~~~ie~~~~~g~~~~~~~G~ 670 (828)
...+.++.++|++|||++.|.. +...+...+|.++|+|||.+||.++.||+..+||.|.+++||+
T Consensus 567 --------------k~~~~i~~~~l~~yLG~~~f~~-~~~~~~~~vGvVtGLAWT~vGGd~L~IE~~~~~Gkg~l~lTG~ 631 (782)
T COG0466 567 --------------KSIVKIDEKNLKKYLGVPVFRY-GKAEEEDQVGVVTGLAWTEVGGDLLTIEAVKMPGKGKLTLTGS 631 (782)
T ss_pred --------------ccceeeCHHHHHHHhCCcccCc-cccccCCCCeeEeeeeeecCCceEEEEEEEEecCCccEEEecc
Confidence 1125899999999999999988 5566778899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEe
Q 003349 671 LGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTG 750 (828)
Q Consensus 671 ~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~~~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~G 750 (828)
+|++||||++.|++|+++|+..++. +..+|...|||||+|.|++||||||||+|||+|++|+++++|+++++||||
T Consensus 632 LGdVMKESa~~A~s~vrs~a~~~~i----~~~~fek~dIHiHVPeGAtPKDGPSAGitm~TAlvS~lt~~~V~~~vAMTG 707 (782)
T COG0466 632 LGDVMKESAQAALSYVRSRAEKLGI----DPDFFEKRDIHIHVPEGATPKDGPSAGITMATALVSLLTGKPVRADVAMTG 707 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC----CcccccccceEEECCCCCCCCCCcchHHHHHHHHHHHHhCCCCCCCcccee
Confidence 9999999999999999999988875 345689999999999999999999999999999999999999999999999
Q ss_pred ecCCCceeeecCCHHHHHHHHHHcCCCEEeecccChhhhccChhhhhCCcEEEEcCCHHHHHHHHHcCC
Q 003349 751 EMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 819 (828)
Q Consensus 751 ei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~~~ 819 (828)
||+|+|.|.||||+++|+.+|.++|+|+||+|.+|.+|+.++|++++++++|++|++++|+++++|...
T Consensus 708 EITLrG~VLpIGGLKEKllAA~R~GIk~viiP~~N~~DleeiP~~vk~~l~i~~V~~~~eVl~~al~~~ 776 (782)
T COG0466 708 EITLRGRVLPIGGLKEKLLAAHRGGIKTVIIPKDNERDLEEIPDNVKEGLEIHPVKTIDEVLKLALVGN 776 (782)
T ss_pred eEEeeeceeecccHHHHHHHHHhcCCcEEeccccccccHHhCCHHHHcCCeEEEeccHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999764
No 2
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-121 Score=1007.50 Aligned_cols=791 Identities=44% Similarity=0.709 Sum_probs=688.6
Q ss_pred chhhhhhccceeeecCCCCCCcccccc------cccCCCCCCCCCCccccccceeEEEEEEeccCccCCCCceEEEEEEE
Q 003349 2 LLLIRQWAPLFLKVSGVGGDSSERASK------VQVGASDGKNQQEVIHWHNRGVAARALHLSRGVEKPSGRVTYIVVLE 75 (828)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~~~~dG~~~~~I~~~ 75 (828)
|+.-|||+|+||++|+..+|++-.+-. ..++++ +.. -.--+|..+.++....+.... .+++..|.+.+.
T Consensus 102 l~~~qpyiG~fl~kdd~~~~~~~t~~~~vyi~~~~~~~~--~~~-~~l~~hRr~~~~~~~~~~~g~--~~~~~~~~~~~~ 176 (906)
T KOG2004|consen 102 LRRQQPYIGAFLLKDDSSGDSVITSINEVYILEVFPGKD--KLR-MVLYPHRRIRITELAPISEGK--EDAEVEYSLLVT 176 (906)
T ss_pred HHhcCcccceeeeccCCCCCcceeeccccceeeeecCCc--chh-hhhhhhhheeeeeeccccccc--cccccceeeccc
Confidence 567789999999999999988744331 123222 111 112234444444443333210 122338999999
Q ss_pred EeeEEEEeeecccCC--eEEEEEEEeccchhhhhccCCChHHHHHHHHHHHHHHHHHHHhhhccCchhhHHHhhccCChH
Q 003349 76 GLCRFSVQELSTRGT--YYTARISSLEMTKIEMEQVEQDPDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIH 153 (828)
Q Consensus 76 G~~RfrI~~~~~~~~--y~~a~Ve~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 153 (828)
|.+||+|.+..++.+ .+..+|+.+.+ ++.+..++..++..++...++++++.+.........+......+++.
T Consensus 177 ~~~r~~i~e~~~e~~~~vl~v~v~~v~~-----e~~~~~~~~ka~~~ei~~t~rdii~~n~l~r~~v~~~~~~~~~~~~~ 251 (906)
T KOG2004|consen 177 GLSRLNITEMKEEKEAEVLSVEVENVKD-----EPFKKDEEIKALTSEILKTLRDIIAVNSLFREQVATLSQLIVEDNPI 251 (906)
T ss_pred ccccccchhhhccccCCceeeeeecccC-----CccCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccChh
Confidence 999999998866543 44555555543 45556666899999999999999887754444444444566788999
Q ss_pred HHHHHHHHcCCCCHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhCC
Q 003349 154 KLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGD 233 (828)
Q Consensus 154 ~la~~la~~lpl~~~~kq~LLe~~d~~~Rl~~l~~~l~~~~~~l~~~~~i~~~i~~~~~~~~r~~~l~~ql~~l~~~~~~ 233 (828)
.|||+.|+....+..+.|++|++.|...||++.+.+|.++++..+++++|.+.+..++..++|+|+|++|++.|+++++.
T Consensus 252 ~LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~ki~k~vE~k~~~~~r~ylL~eQlk~IKkeLg~ 331 (906)
T KOG2004|consen 252 KLADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKIKQDHREYLLREQLKAIKKELGI 331 (906)
T ss_pred HHHHHHHHHhccCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCChh-HHHHHHHHHHHcCCChhhHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhc
Q 003349 234 NDDDED-DLVALERKMQSAGMPSNIWKHVQKELRRLKKMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLD 312 (828)
Q Consensus 234 ~~~~~~-~~~~~~~~l~~~~lp~~a~~~~~~e~~~l~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~ 312 (828)
..+.++ ..+.+++++....+|+.+++.+++|+.+++.+.+++++|+.+++|++|++.+||+..+.. ++++..++++|+
T Consensus 332 e~Ddkd~~~~~~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~E-n~dl~~Ak~iLd 410 (906)
T KOG2004|consen 332 EKDDKDALVEKFRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTE-NLDLARAKEILD 410 (906)
T ss_pred CccchhhHHHHHHHHhhhccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChh-hhhHHHHHHhhc
Confidence 766555 566789999999999999999999999999999999999999999999999999999988 999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccccccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGS 392 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~ 392 (828)
+++||++++|++|++++++..+++..+|+++||+||||+|||+++++||+.+++.|++++++|.+|.+++.||+++|+|+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGA 490 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGA 490 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCcc
Q 003349 393 MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPP 472 (828)
Q Consensus 393 ~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~a 472 (828)
+||++.+++++....||+++|||||++....+|||.++||++||++||..|.|||+++++|+++++||||+|..+.++++
T Consensus 491 MPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~p 570 (906)
T KOG2004|consen 491 MPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPP 570 (906)
T ss_pred CChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChh
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH
Q 003349 473 LLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVA 552 (828)
Q Consensus 473 Ll~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l 552 (828)
|+||+++|+++.|..+|+.+|+++||.++.+..+|+...++.++++++..|+++||+++|+|+|++.|+.+||++|+++.
T Consensus 571 LlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv 650 (906)
T KOG2004|consen 571 LLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVV 650 (906)
T ss_pred hhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCccccccCCccccccccCCCeeEEeeccCCCccccccc-ccccCcceeecccchhhccCCCccCchhhhh
Q 003349 553 EQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSN-TFRITSPLVVDEAMLEKVLGPPRFDDREAAE 631 (828)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~L~~~l~~~~~~~~~~~~ 631 (828)
+..+.+ .......++-...++++. ..++.+..+ ...-..++.|++++|.+|+|||.|.. ++.+
T Consensus 651 ~~~~~~----------~~~~~~~~~~~~~~~~e~-----~~~~t~~~~~~~~~~~~i~I~~~nL~d~lG~P~f~~-e~~y 714 (906)
T KOG2004|consen 651 EGENSK----------EESAEKNGRESTEKSIEE-----AESSTSGADLLPEMPENIEIDESNLQDILGPPVFTS-ERMY 714 (906)
T ss_pred Hhhccc----------cccccccccccccccccc-----ccccCcccccccCCcceeeecHHHHHHHhCCCcccH-HHHh
Confidence 984322 011111111111111111 111112211 11224578999999999999999966 7788
Q ss_pred hcCCCceeEEEEEeecCceEEEEEEEEEcCc--ceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCcccE
Q 003349 632 RVAAPGISVGLVWTNFGGEVQFVEATAMRGK--GELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDI 709 (828)
Q Consensus 632 ~~~~~G~v~g~~~~~~~g~~~~ie~~~~~g~--~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~~~~~~dv 709 (828)
+...||++.|++|+.+||..+.||++...|. |.+.+||++|++||||+++|++|+++++.... ....+|.+.+|
T Consensus 715 ~~tp~GVvmGLaWT~mGG~~lyvEts~~~~~~~g~l~~TGqLGDVMKESa~iA~t~ar~~~~~~~----p~n~~l~~~~I 790 (906)
T KOG2004|consen 715 EVTPPGVVMGLAWTAMGGSTLYVETSLMRGLGDGSLEITGQLGDVMKESAQIAYTWARAFLSKKE----PENKFLENSDI 790 (906)
T ss_pred ccCCCeeEEEEEEecCCCeEEEEEEEEeccCCCCceEEecchHHHHHHHHHHHHHHHHHHHHhhC----cccchhcccce
Confidence 8888999999999999999999999998765 77999999999999999999999998765443 24557999999
Q ss_pred EEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccChhhh
Q 003349 710 HIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDL 789 (828)
Q Consensus 710 ~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~ 789 (828)
|+|+|.|+++|||||||+.+++|++|.++++|+++++||||||+|+|.|.||||+++|+.+|.+.|+|+||+|.+|.+|+
T Consensus 791 HlH~PeGAtpKDGPSAGvTmvTsLlSLa~~kpVr~d~AMTGEvtLtGkVLpiGGiKEK~iAA~Rsg~k~ii~P~~N~~D~ 870 (906)
T KOG2004|consen 791 HLHVPEGATPKDGPSAGVTMVTALLSLALGKPVRQDLAMTGEVTLTGKVLPVGGIKEKTIAARRSGVKTIIFPEANRRDF 870 (906)
T ss_pred eeeccCCCCCCcCCcccchhHHHHHHHhhCCcchhhhHhhcccccccceeccCchHHHHHHHHhcCCeEEEccccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhhhCCcEEEEcCCHHHHHHHHHcCCCCCC
Q 003349 790 VEVPAAVLASLEIILAKRMEDVLEQAFEGGCPWR 823 (828)
Q Consensus 790 ~~~~~~~~~~i~i~~v~~l~e~~~~~~~~~~~~~ 823 (828)
..+|+.++.+++++++++++|+++.+|.++++++
T Consensus 871 ~elp~~vkegLev~~a~~yedv~~~aF~~~~~~~ 904 (906)
T KOG2004|consen 871 EELPENVKEGLEVHFAETYEDVFEAAFDDGPTEK 904 (906)
T ss_pred HhhhhhhhccceEEeHHHHHHHHHHHhCCCchhc
Confidence 9999999999999999999999999999887654
No 3
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=100.00 E-value=1.6e-112 Score=1010.71 Aligned_cols=714 Identities=45% Similarity=0.731 Sum_probs=656.9
Q ss_pred CCCCccccccceeEEEEEEeccCccCCCCceEEEEEEEEeeEEEEeeecccCCeEEEEEEEeccchhhhhccCCChHHHH
Q 003349 38 NQQEVIHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGTYYTARISSLEMTKIEMEQVEQDPDFIA 117 (828)
Q Consensus 38 ~~~~~~~l~~vGt~a~I~~~~~~~~~~dG~~~~~I~~~G~~RfrI~~~~~~~~y~~a~Ve~l~~~~~~~~~~~~~~~~~~ 117 (828)
+++..+++|+|||+|+|+++.+. ||| ++.|+++|.+||+|.++.+++||++|+|+++++| .....+..+
T Consensus 61 ~~p~~~dLy~VGtla~I~~~~~l---~DG--~~~Ilv~Gl~RfrI~~~~~~~py~~A~Ve~l~~~------~~~~~e~~a 129 (784)
T PRK10787 61 DEPGVNDLFTVGTVASILQMLKL---PDG--TVKVLVEGLQRARISALSDNGEHFSAKAEYLESP------TIDEREQEV 129 (784)
T ss_pred CCCCcccccCccEEEEEEEeeEC---CCC--eEEEEEEEEEEEEEEEEEcCCCCEEEEEEEecCC------CCCchHHHH
Confidence 34556789999999999999999 999 9999999999999999988999999999999863 112334556
Q ss_pred HHHHHHHHHHHHHHHhhhccCchhhHHHhhccCChHHHHHHHHHcCCCCHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 003349 118 LSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELVDRHLQSI 197 (828)
Q Consensus 118 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~~la~~lpl~~~~kq~LLe~~d~~~Rl~~l~~~l~~~~~~l 197 (828)
+...+.+.+.+|..... ..+.+....+..++||.||+|+||+.+|++.++||+||++.|+.+|+++++.+|.++++.+
T Consensus 130 l~~~ll~~~~~~~~l~~--~~~~e~~~~~~~~ddp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil 207 (784)
T PRK10787 130 LVRTAISQFEGYIKLNK--KIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLL 207 (784)
T ss_pred HHHHHHHHHHHHHHhcc--cCCHHHHhhhhccccHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 66777888888877553 1223334456678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhcCCCCCC
Q 003349 198 RVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIWKHVQKELRRLKKMQPQQPG 277 (828)
Q Consensus 198 ~~~~~i~~~i~~~~~~~~r~~~l~~ql~~l~~~~~~~~~~~~~~~~~~~~l~~~~lp~~a~~~~~~e~~~l~~~~~~~~~ 277 (828)
+++++|.++++.+++++||+|||+||++.|++|+++.+..+.++..+++++.+.++|+++.+.+.+|+++++++.+.+++
T Consensus 208 ~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e 287 (784)
T PRK10787 208 QVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAE 287 (784)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccCCCcchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCch
Confidence 99999999999999999999999999999999999877677899999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHH
Q 003349 278 YTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLA 357 (828)
Q Consensus 278 ~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la 357 (828)
++.+++|++|++.+||+..+.+ ..++..++++|+++++|++++|++|.++++........+++++||+||||||||+++
T Consensus 288 ~~~~~~yl~~~~~~pw~~~~~~-~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 288 ATVVRGYIDWMVQVPWNARSKV-KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred HHHHHHHHHHHHhCCCCCCCcc-cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHH
Confidence 9999999999999999999887 899999999999999999999999999999776655567889999999999999999
Q ss_pred HHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCc
Q 003349 358 SSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDP 437 (828)
Q Consensus 358 ~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~ 437 (828)
+.+|+.++.+++++++++..+...+.|+++.|+|..+|.+.+.+..+...++|+||||+|+++++.+++++++|+++||+
T Consensus 367 ~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~ 446 (784)
T PRK10787 367 QSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDP 446 (784)
T ss_pred HHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999988888899999999999998888999999999999
Q ss_pred ccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCH
Q 003349 438 EQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPE 517 (828)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~ 517 (828)
.++..|.|+|...++|+++++||+|+|.. .+++||++||++|.|.+|+.+++.+|+++++.++.+.++++.+..+.+++
T Consensus 447 ~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~ 525 (784)
T PRK10787 447 EQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDD 525 (784)
T ss_pred ccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECH
Confidence 99999999999999999999999999998 59999999999999999999999999999999988888888888899999
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeeccCCCcccc
Q 003349 518 AMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHE 597 (828)
Q Consensus 518 ~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 597 (828)
+++.++++.|+.++|+|+|+|.|+++|+.++.+.+.+. .
T Consensus 526 ~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~--~--------------------------------------- 564 (784)
T PRK10787 526 SAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDK--S--------------------------------------- 564 (784)
T ss_pred HHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcC--C---------------------------------------
Confidence 99999999999999999999999999998887766440 0
Q ss_pred cccccccCcceeecccchhhccCCCccCchhhhhhcCCCceeEEEEEeecCceEEEEEEEEEcCcceEEEeeCCChHHHH
Q 003349 598 VSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKE 677 (828)
Q Consensus 598 ~~~~~~~~~~~~i~~~~L~~~l~~~~~~~~~~~~~~~~~G~v~g~~~~~~~g~~~~ie~~~~~g~~~~~~~G~~~~~~~e 677 (828)
..++.++.+++++|+|++.|.. ........+|+++|+||++.||.+++||+++++|.|++.+||.+|++|||
T Consensus 565 -------~~~v~v~~~~~~~~lg~~~~~~-~~~~~~~~~G~~~gla~t~~gg~~l~iE~~~~~g~g~~~~tG~lg~vmke 636 (784)
T PRK10787 565 -------LKHIEINGDNLHDYLGVQRFDY-GRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQE 636 (784)
T ss_pred -------CceeeecHHHHHHHhCCCcccc-chhhcCCCceEEEEeEEeCCCeEEEEEEEEEecCCceEEEecCcHHHHHH
Confidence 1246889999999999999987 45556778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCce
Q 003349 678 SAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGL 757 (828)
Q Consensus 678 s~~~a~~~~~~~~~~l~~~~~~~~~~~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~ 757 (828)
|++.|++|+++++..++. ...++.++|||||++.|..+++|||||+|+++|++|++.++|+++++||||||+|+|+
T Consensus 637 s~~~A~~~~~~~~~~~~~----~~~~~~~~Di~i~v~~g~~~~dgpsagla~~~Al~S~~~~~pv~~~~a~tGEi~L~G~ 712 (784)
T PRK10787 637 SIQAALTVVRARAEKLGI----NPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQ 712 (784)
T ss_pred HHHHHHHHHHHHHHHcCC----CcccccCceEEEEecCCCCCCCCCchHHHHHHHHHHHhhCCCCCCCeEEEEEecCCee
Confidence 999999999999887764 2344779999999988888899999999999999999999999999999999999999
Q ss_pred eeecCCHHHHHHHHHHcCCCEEeecccChhhhccChhhhhCCcEEEEcCCHHHHHHHHHcCC
Q 003349 758 VLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 819 (828)
Q Consensus 758 v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~~~ 819 (828)
|+||||+.+|+.+|.++|||+||||.+|.+++..+|++++.+++|++|+|+.||++.+|...
T Consensus 713 V~pVggl~eki~~A~r~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~~~ea~~~~~~~~ 774 (784)
T PRK10787 713 VLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNE 774 (784)
T ss_pred EEeeCCHHHHHHHHHHCCCCEEEEChhhhhhhhhccHHhcCCcEEEEeCCHHHHHHHHhccC
Confidence 99999999999999999999999999999999889999999999999999999999998754
No 4
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=100.00 E-value=3.8e-110 Score=1003.12 Aligned_cols=723 Identities=52% Similarity=0.827 Sum_probs=658.7
Q ss_pred CCCccccccceeEEEEEEeccCccCCCCceEEEEEEEEeeEEEEeeecccCCeEEEEEEEeccchhhhhccCCChHHHHH
Q 003349 39 QQEVIHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGTYYTARISSLEMTKIEMEQVEQDPDFIAL 118 (828)
Q Consensus 39 ~~~~~~l~~vGt~a~I~~~~~~~~~~dG~~~~~I~~~G~~RfrI~~~~~~~~y~~a~Ve~l~~~~~~~~~~~~~~~~~~l 118 (828)
+|..+++|+|||+|+|+++.+.+..+|| +|.|+|+|.+||+|.++..++||++|+|+++++| +......+..++
T Consensus 52 ~p~~~~ly~VGt~a~I~~~~~~~d~~dG--~~~Ilv~G~~R~rI~~~~~~~p~~~A~V~~l~~~----~~~~~~~e~~al 125 (775)
T TIGR00763 52 EPEEDDIYSVGVVAQILEMLPLPSSGTA--TYKVVVEGLRRIRIKELSDKGGYLVVRVDNLKEE----PFDKDDEEIKAL 125 (775)
T ss_pred CCCcccccCCceEEEEEEeccCCCCCCC--eEEEEEEEEEEEEEEEEecCCCcEEEEEEEecCc----CCCCCcHHHHHH
Confidence 3456789999999999999995111559 9999999999999999988999999999999864 112234567889
Q ss_pred HHHHHHHHHHHHHHhhhccCchhhHHHhhccCChHHHHHHHHHcCCCC-HHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 003349 119 SRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEIS-FEEQLVMLDSVDLKVRLSKATELVDRHLQSI 197 (828)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~~la~~lpl~-~~~kq~LLe~~d~~~Rl~~l~~~l~~~~~~l 197 (828)
.+.+...+.+|.............+....+++||.||+|+||+.+|++ .++||+||++.|+..|+++++.+|.++++.+
T Consensus 126 ~~~l~~~~~el~~l~~l~~~~~e~~~~~~~~~dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l 205 (775)
T TIGR00763 126 TREIKETFRELISLSKLFREQPALLSALEDIDEPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLKKELELL 205 (775)
T ss_pred HHHHHHHHHHHHHhCccccCCHHHHHHHhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999998765311222334445666889999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhcCCCCCC
Q 003349 198 RVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIWKHVQKELRRLKKMQPQQPG 277 (828)
Q Consensus 198 ~~~~~i~~~i~~~~~~~~r~~~l~~ql~~l~~~~~~~~~~~~~~~~~~~~l~~~~lp~~a~~~~~~e~~~l~~~~~~~~~ 277 (828)
+++++|+++++.++++.||+|||+||++.|++|+++.++.+++++.+++++.+..+|+++.+.+.+|+++++++.+.+++
T Consensus 206 ~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 285 (775)
T TIGR00763 206 KLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEKDDKDELEKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSE 285 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCch
Confidence 99999999999999999999999999999999999877777899999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHH
Q 003349 278 YTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLA 357 (828)
Q Consensus 278 ~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la 357 (828)
+..+++|+++++++||...... ..++..+++.|+++++|++++++++.++++.....+..+++++||+||||||||++|
T Consensus 286 ~~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 286 FTVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred HHHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHH
Confidence 9999999999999999998887 899999999999999999999999999998877666667789999999999999999
Q ss_pred HHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCc
Q 003349 358 SSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDP 437 (828)
Q Consensus 358 ~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~ 437 (828)
+++|+.++.+++++++++..+.+++.++.+.|+|..++.+.+.+..+...++|+||||||+++++.++++.++|+++||+
T Consensus 365 k~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~ 444 (775)
T TIGR00763 365 KSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDP 444 (775)
T ss_pred HHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCH
Confidence 99999999999999999988889999999999999999999999888777889999999999988888899999999999
Q ss_pred ccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCH
Q 003349 438 EQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPE 517 (828)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~ 517 (828)
.++..|.+++.+.++|+++++||+|||..+.++++|++||++|+|++|+.+++.+|++.++.++.+..+++....+.+++
T Consensus 445 ~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~ 524 (775)
T TIGR00763 445 EQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITD 524 (775)
T ss_pred HhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeeccCCCcccc
Q 003349 518 AMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHE 597 (828)
Q Consensus 518 ~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 597 (828)
+++.++++.|++++|+|+|+|.|+++|++++.+++... . ...++
T Consensus 525 ~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~--~-------------------~~~~~--------------- 568 (775)
T TIGR00763 525 EALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQG--E-------------------KKKSE--------------- 568 (775)
T ss_pred HHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhcc--C-------------------cccCC---------------
Confidence 99999999999999999999999999999998877531 0 00010
Q ss_pred cccccccCcceeecccchhhccCCCccCchhhhhhcCCCceeEEEEEeecCceEEEEEEEEEcCcceEEEeeCCChHHHH
Q 003349 598 VSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKE 677 (828)
Q Consensus 598 ~~~~~~~~~~~~i~~~~L~~~l~~~~~~~~~~~~~~~~~G~v~g~~~~~~~g~~~~ie~~~~~g~~~~~~~G~~~~~~~e 677 (828)
...+.++.+++++|+|+|++.. +...+...||+++|+||++.||.++.||+++++|.|++++||++|++|||
T Consensus 569 -------~~~v~i~~~~~~~~lg~~~~~~-~~~~~~~~~G~v~gla~~~~~g~~~~iE~~~~~G~~~~~~tG~~~~~~kE 640 (775)
T TIGR00763 569 -------AESVVITPDNLKKYLGKPVFTY-ERAYEVTPPGVVMGLAWTPMGGDTLFIETTKVAGKGSLELTGQLGDVMKE 640 (775)
T ss_pred -------cccccCCHHHHHHhcCcccccc-chhccCCCCeEEEEEEEeCCCcEEEEEEEEEeCCCceEEEeCCchHHHHH
Confidence 1236799999999999999988 44566778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCce
Q 003349 678 SAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGL 757 (828)
Q Consensus 678 s~~~a~~~~~~~~~~l~~~~~~~~~~~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~ 757 (828)
|+++|++|+++++..++.. ..+|+++|||||+++|+++|+|||+|||+|+|++|+++++|++++++|||||+|+|+
T Consensus 641 S~~~a~~~v~~~~~~~~~~----~~~~~~~di~v~~~~g~~~k~Gpsa~laia~al~sa~~~~~v~~~~~~~GEi~L~G~ 716 (775)
T TIGR00763 641 SAQIALTYVRSIAADLGIS----PNFFEKADIHLHVPEGATPKDGPSAGITMATALLSLATGKPVRPDVAMTGEITLRGK 716 (775)
T ss_pred HHHHHHHHHHHHHHHcCCC----ccccCCeEEEEEcCCcccCCCCCcchHHHHHHHHHHccCCCCCCCEEEEEEecCCce
Confidence 9999999999887666532 223689999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCHHHHHHHHHHcCCCEEeecccChhhhccChhhhhCCcEEEEcCCHHHHHHHHH
Q 003349 758 VLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAF 816 (828)
Q Consensus 758 v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~ 816 (828)
|+||||+.+|+.+|.++|+++||+|.+|.+++.++|+++..+++|++|+|+.||++++|
T Consensus 717 v~pv~g~~~k~~~A~~~G~~~viiP~~n~~~~~~~p~~~~~~~~i~~v~~l~e~~~~~~ 775 (775)
T TIGR00763 717 VLPIGGLKEKTIAAKRAGIKTIILPEKNRRDLEELPENVKEGLEIHFVKHYDEVLKKAF 775 (775)
T ss_pred EEEeCCHHHHHHHHHHCCCCEEEECccchhhhhhchHhhcCCCEEEEeCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999864
No 5
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=100.00 E-value=2.6e-49 Score=455.70 Aligned_cols=403 Identities=28% Similarity=0.393 Sum_probs=306.0
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcC-ch---
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVK-DE--- 379 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~-~~--- 379 (828)
+++|++..++.+...+. ...+.++||+||||||||++|+++.+.. +.+|+.++|+... +.
T Consensus 66 ~iiGqs~~i~~l~~al~------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~ 139 (531)
T TIGR02902 66 EIIGQEEGIKALKAALC------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGI 139 (531)
T ss_pred HeeCcHHHHHHHHHHHh------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcccc
Confidence 58899999888875432 1345679999999999999999998653 2467888876421 11
Q ss_pred -hhhccCc--cccccc-----C--cchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCccccccccccc--
Q 003349 380 -ADIRGHR--RTYIGS-----M--PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY-- 447 (828)
Q Consensus 380 -~~l~g~~--~~~vg~-----~--~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~-- 447 (828)
..+.+.. ..|.|. . +......+..+ .++++|||||+.+++.. ++.|+++|+..... +...|
T Consensus 140 ~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a--~gG~L~IdEI~~L~~~~----q~~LL~~Le~~~~~-~~~~~~~ 212 (531)
T TIGR02902 140 ADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA--HGGVLFIDEIGELHPVQ----MNKLLKVLEDRKVF-LDSAYYN 212 (531)
T ss_pred chhhcCCcccchhccccccccCCcccccCchhhcc--CCcEEEEechhhCCHHH----HHHHHHHHHhCeee-ecccccc
Confidence 1122210 111111 0 00011123333 35699999999999887 99999999764321 11000
Q ss_pred ---------------CCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcc
Q 003349 448 ---------------LNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEF 512 (828)
Q Consensus 448 ---------------~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~ 512 (828)
.+.+.|+ .++++|+|.++.+++++++||..+.|++++.+++.+|++..+.+ .+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~d~--rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k----------~~ 280 (531)
T TIGR02902 213 SENPNIPSHIHDIFQNGLPADF--RLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK----------IG 280 (531)
T ss_pred ccCcccccchhhhcccCcccce--EEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH----------cC
Confidence 0122222 35567788899999999999999999999999999999887531 23
Q ss_pred cccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeeccCC
Q 003349 513 LQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMG 592 (828)
Q Consensus 513 ~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 592 (828)
+.+++++++.+.. |++ +. |.+.++++.|+..+..+
T Consensus 281 i~is~~al~~I~~-y~~--n~----Rel~nll~~Aa~~A~~~-------------------------------------- 315 (531)
T TIGR02902 281 INLEKHALELIVK-YAS--NG----REAVNIVQLAAGIALGE-------------------------------------- 315 (531)
T ss_pred CCcCHHHHHHHHH-hhh--hH----HHHHHHHHHHHHHHhhC--------------------------------------
Confidence 6799999987654 665 23 44555665555433222
Q ss_pred CcccccccccccCcceeecccchhhccCCCccCch--hhhhhcCCCceeEEEEEee-cCceEEEEEEEEEc--Ccc-eEE
Q 003349 593 ESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDR--EAAERVAAPGISVGLVWTN-FGGEVQFVEATAMR--GKG-ELH 666 (828)
Q Consensus 593 ~~~~~~~~~~~~~~~~~i~~~~L~~~l~~~~~~~~--~~~~~~~~~G~v~g~~~~~-~~g~~~~ie~~~~~--g~~-~~~ 666 (828)
....|+.++++++++.+.+... ....+.+.+|.++|++|+| .+|.+++||+++.+ |.+ .++
T Consensus 316 -------------~~~~It~~dI~~vl~~~~~~~~~~~~~~~~~~vg~v~glav~g~~~g~~v~vE~~~~~~~~~~g~~~ 382 (531)
T TIGR02902 316 -------------GRKRILAEDIEWVAENGNYHPKPEIKLSSEPQIGRVNGLAVYGPNSGAVLEVEATAERAENLPGSIN 382 (531)
T ss_pred -------------CCcEEcHHHHHHHhCCcccccchhhhcccCCceEEEEEEEEEcCCceEEEEEEEEEecCCCCCCeEE
Confidence 0136889999999998888752 2344566789999999998 68999999999987 554 899
Q ss_pred EeeCCCh--------------HHHHHHHHHHHHHHHhhhhhhhhhhccCCC-CCcccEEEEccCCCCCCCCchhHHHHHH
Q 003349 667 LTGQLGD--------------VIKESAQIALTWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVT 731 (828)
Q Consensus 667 ~~G~~~~--------------~~~es~~~a~~~~~~~~~~l~~~~~~~~~~-~~~~dv~i~~~~~~~~~~g~sa~laia~ 731 (828)
++|++++ +++||++++++++++. .|+ ++++|||||+ +++++|+|||+|||+|+
T Consensus 383 i~G~~~~~~~~~~~~~~~~k~~~~es~~~v~~~l~~~-----------~g~~~~~~di~vn~-p~~~~k~Gpsadlaia~ 450 (531)
T TIGR02902 383 VTGIIEEEEIGGSGKSVRRKSSARGSVENVLAVLRSV-----------FGINPQNYDIHINF-PGGIPVDGPSAGVAIAV 450 (531)
T ss_pred EEeccCccccccchhhhhHHHHHHHHHHHHHHHHHHh-----------cCCCCCCeeEEEEc-CCCCCCCCccHHHHHHH
Confidence 9999987 8999999999999952 256 8999999997 78899999999999999
Q ss_pred HHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccChhhh-ccChhhhhCCcEEEEcCCHHH
Q 003349 732 ALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDL-VEVPAAVLASLEIILAKRMED 810 (828)
Q Consensus 732 ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~-~~~~~~~~~~i~i~~v~~l~e 810 (828)
|++||+.++|++++++|||||+|+|+|+||||+.+|+.+|.++|+++||||.+|..++ ..+ .+++|++|+|+.|
T Consensus 451 ailsa~~~~~~~~~~a~~GElsL~G~v~pV~Gv~~ki~~A~~~G~~~viiP~~n~~e~~~~~-----~~i~v~~v~~l~e 525 (531)
T TIGR02902 451 AIYSAIFKCPIDNKVAMTGEISLNGLVKPVGGVPSKIEAAKKAGAKKVIIPYENWQESFGSI-----SGINVIPVKNIDE 525 (531)
T ss_pred HHHHHccCCCCCCCEEEEEEecCCceEeccCCHHHHHHHHHHcCCCEEEECHHHHHHHhhcc-----CCcEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999999999999999998876 333 4999999999999
Q ss_pred HHHHHH
Q 003349 811 VLEQAF 816 (828)
Q Consensus 811 ~~~~~~ 816 (828)
++.++|
T Consensus 526 ~~~~~~ 531 (531)
T TIGR02902 526 ALNYAL 531 (531)
T ss_pred HHHHhC
Confidence 998864
No 6
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=100.00 E-value=2.1e-47 Score=445.93 Aligned_cols=501 Identities=26% Similarity=0.400 Sum_probs=334.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCChhhH
Q 003349 179 LKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIW 258 (828)
Q Consensus 179 ~~~Rl~~l~~~l~~~~~~l~~~~~i~~~i~~~~~~~~r~~~l~~ql~~l~~~~~~~~~~~~~~~~~~~~l~~~~lp~~a~ 258 (828)
....|..+.+++...+..-.++.++++++..++++.|.+|+-+-++..++++.+-.+ ..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------------- 124 (615)
T TIGR02903 66 LPEILEDTEDHIADILARRTVENRIERKVETRMQERQNKYLEEIRLQVLKEEKGPEN--SS------------------- 124 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc--HH-------------------
Confidence 334455666666667777777777888887777777777766666666655432211 01
Q ss_pred HHHHHHHHHHHhcCCCCCCcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCC
Q 003349 259 KHVQKELRRLKKMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDA 338 (828)
Q Consensus 259 ~~~~~e~~~l~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~ 338 (828)
..+++++++.+.... ..+.+.+. ++.....+++|++.+++.+...+.. .
T Consensus 125 --~~~~~~~l~~~~~~~----~~~~~~~~-------------------~rp~~~~~iiGqs~~~~~l~~~ia~------~ 173 (615)
T TIGR02903 125 --TLKKLERLEKLEKKK----LHKSAQSL-------------------LRPRAFSEIVGQERAIKALLAKVAS------P 173 (615)
T ss_pred --HHHHHHHHHHHHHHH----hhhHHhhh-------------------cCcCcHHhceeCcHHHHHHHHHHhc------C
Confidence 111222222211100 00110000 0011123478999988887665531 2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcC-chhhhccCcccccccCcchH----HHHHHh
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVK-DEADIRGHRRTYIGSMPGRL----IDGLKR 403 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~-~~~~l~g~~~~~vg~~~g~l----~~~~~~ 403 (828)
.+.+++|+|||||||||+|+++++.. +.+++.+++.... +...+. ..+.|...... ...+..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~---~~llg~~~~~~~~~a~~~l~~ 250 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT---NPLLGSVHDPIYQGARRDLAE 250 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh---HHhcCCccHHHHHHHHHHHHH
Confidence 34579999999999999999998766 2457778776542 111110 01122211111 001110
Q ss_pred -----------cCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCC-----------eee---cCCCcE
Q 003349 404 -----------VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLN-----------VPF---DLSKVI 458 (828)
Q Consensus 404 -----------~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~-----------~~~---~~~~vi 458 (828)
....++++||||++.+.+.. +..|+.+|+..+.. +.+.+.. ..+ ...+++
T Consensus 251 ~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~----Q~~Ll~~Le~~~v~-~~~~~~~~~~~~~~~~ik~~~~~~~~~~~V 325 (615)
T TIGR02903 251 TGVPEPKTGLVTDAHGGVLFIDEIGELDPLL----QNKLLKVLEDKRVE-FSSSYYDPDDPNVPKYIKKLFEEGAPADFV 325 (615)
T ss_pred cCCCchhcCchhhcCCCeEEEeccccCCHHH----HHHHHHHHhhCeEE-eecceeccCCcccchhhhhhcccCccceEE
Confidence 01135699999999998876 88999999754311 1111100 000 112344
Q ss_pred EE-EecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 459 FV-ATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 459 iI-~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
+| +|+|.+..++++|++||..+.|++++.+++..|++..+. .. .+.+++++++.|.. |++ .| |..-
T Consensus 326 LI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~-----~~-----~v~ls~eal~~L~~-ys~-~g-Rral 392 (615)
T TIGR02903 326 LIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE-----KI-----NVHLAAGVEELIAR-YTI-EG-RKAV 392 (615)
T ss_pred EEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHH-CCC-cH-HHHH
Confidence 44 466778899999999999999999999999999998753 11 35688988887765 555 23 3322
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeeccCCCcccccccccccCcceeecccchhh
Q 003349 538 RNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEK 617 (828)
Q Consensus 538 ~~i~~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~ 617 (828)
..|..++..+..+.... . .+ .....|+.+++++
T Consensus 393 n~L~~~~~~~~~~~~~~---~--------------------~~------------------------~~~~~I~~edv~~ 425 (615)
T TIGR02903 393 NILADVYGYALYRAAEA---G--------------------KE------------------------NDKVTITQDDVYE 425 (615)
T ss_pred HHHHHHHHHHHHHHHHh---c--------------------cC------------------------CCCeeECHHHHHH
Confidence 34444443222211100 0 00 1135789999999
Q ss_pred ccCCCccCc--hhhhhhcCCCceeEEEEEeecCceEEEEEEEE-EcCcceEEEee---CCChHHHHHHHHHHHHHHHhhh
Q 003349 618 VLGPPRFDD--REAAERVAAPGISVGLVWTNFGGEVQFVEATA-MRGKGELHLTG---QLGDVIKESAQIALTWVRARAT 691 (828)
Q Consensus 618 ~l~~~~~~~--~~~~~~~~~~G~v~g~~~~~~~g~~~~ie~~~-~~g~~~~~~~G---~~~~~~~es~~~a~~~~~~~~~ 691 (828)
+++.+++.. .....+...+|+++|++|+|.+|.++.||+.+ ++|.|.+.++| ..++.+|||++.|++++++
T Consensus 426 ~l~~~r~~~~~~~~~~~~~~~g~v~~~~~~g~~g~~v~vE~~~~~~g~pg~~~vgl~~~~~~e~kerv~~A~~~l~~--- 502 (615)
T TIGR02903 426 VIQISRLSPYEKRKASPTYEVGHVFGLGVSGFVGSVLEIEAVAFEAKEPGKGTVRFNDTAGSMAKDSVFNAASVIRK--- 502 (615)
T ss_pred HhCCCcCccchhhhccCCCCcEEEEEEEEeCCCcEEEEEEEEEecCCCCCCceEeeCCcchHHHHHHHHHHHHHHHH---
Confidence 999998753 13344566789999999999999999999999 44545444444 4566677777777777774
Q ss_pred hhhhhhhccCCC-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHH
Q 003349 692 DLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILA 770 (828)
Q Consensus 692 ~l~~~~~~~~~~-~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~ 770 (828)
+.|+ |+++|||||+++|+ +|+|||+|||+|+|++|++.++|++++++|||||+|+|+|+||||+.+|+.+
T Consensus 503 --------~~g~~~~~~di~vnl~~~~-~k~gpsadLaia~ailSa~~~~~~~~~~~~~GElsL~G~v~pV~Gi~~~i~~ 573 (615)
T TIGR02903 503 --------ITGKDLSNYDIHVNVIGGG-RIDGPSAGAAITLCMISAILGKPIRQDVAITGEISLRGKIKPVGGIFEKIYG 573 (615)
T ss_pred --------hCCCCCCCeeEEEEcCCCC-CCCCchHHHHHHHHHHHhccCCCCCCCEEEEEEecCCceEEeeCCHHHHHHH
Confidence 5677 99999999997665 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEeecccChhhh-ccChhhhhCCcEEEEcCCHHHHHHHHH
Q 003349 771 AHRYGIKRVILPERNLKDL-VEVPAAVLASLEIILAKRMEDVLEQAF 816 (828)
Q Consensus 771 A~~~G~k~viiP~~n~~~~-~~~~~~~~~~i~i~~v~~l~e~~~~~~ 816 (828)
|.++|+++||||.+|.+++ ..+ .+++|++|+|+.|+++++|
T Consensus 574 A~~~G~~~viiP~~n~~e~~~~~-----~~i~i~~v~~l~e~~~~~~ 615 (615)
T TIGR02903 574 AKQAGIKTVVIPEENLKDVPQGL-----PGIEVKFVSTIEELMRIVF 615 (615)
T ss_pred HHHCCCCEEEECHHHHHHHhhcc-----CCcEEEEeCCHHHHHHHhC
Confidence 9999999999999998876 222 3899999999999999875
No 7
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=100.00 E-value=1e-43 Score=410.58 Aligned_cols=353 Identities=25% Similarity=0.378 Sum_probs=269.7
Q ss_pred CcEEEEecccccCCCCCCChHHHHHHhcCccccccccc--cc-----CCeeecCCCcEEEEecCCC--CCCCccccCceE
Q 003349 408 NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFND--HY-----LNVPFDLSKVIFVATANRA--QPIPPPLLDRME 478 (828)
Q Consensus 408 ~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~--~~-----~~~~~~~~~viiI~TtN~~--~~l~~aLl~R~~ 478 (828)
+++|||||++.+.+.. +..|+++|+..+...... .. ...++ .-++.+|+++|+. ..++|+|.+||.
T Consensus 227 GGtL~LDei~~L~~~~----q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~i-p~dvrvI~a~~~~ll~~~dpdL~~rfk 301 (637)
T PRK13765 227 KGVLFIDEINTLDLES----QQSLLTAMQEKKFPITGQSERSSGAMVRTEPV-PCDFIMVAAGNLDALENMHPALRSRIK 301 (637)
T ss_pred CcEEEEeChHhCCHHH----HHHHHHHHHhCCEEecccccccccccCCCcce-eeeeEEEEecCcCHHHhhhHHHHHHhc
Confidence 4599999999997765 899999997543221100 00 01112 1256789999885 578999999985
Q ss_pred ----EEEcCCC---CHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH---H-HHHHHHHHHHH
Q 003349 479 ----VIELPGY---TPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN---L-ERNLAALARAA 547 (828)
Q Consensus 479 ----~i~~~~~---~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~---l-~~~i~~l~~~a 547 (828)
.+.|..- +.+.+.+++. ++ ++....++ ....++++++..+++.|++.+|.|. + .+.|..++|.|
T Consensus 302 ~~~v~v~f~~~~~d~~e~~~~~~~-~i-aqe~~~~G---~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a 376 (637)
T PRK13765 302 GYGYEVYMRDTMEDTPENRRKLVR-FV-AQEVKRDG---KIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVA 376 (637)
T ss_pred cCeEEEEcccccCCCHHHHHHHHH-HH-HHHhhhcc---CCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHH
Confidence 2555532 2344444443 22 22222221 2347999999999999999999988 4 67899999986
Q ss_pred HHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeeccCCCcccccccccccCcceeecccchhhccCCCccCch
Q 003349 548 AVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDR 627 (828)
Q Consensus 548 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~l~~~~~~~~ 627 (828)
..-+... +.+ +. ...++..+. .....+++..+++|++...+..
T Consensus 377 ~~~a~~~-~~~-------------------------~i--------~~~~v~~a~--~~~~~i~~~~~~~~l~~~~~~~- 419 (637)
T PRK13765 377 GDIARSE-GAE-------------------------LT--------TAEHVLEAK--KIARSIEQQLADRYIERRKDYE- 419 (637)
T ss_pred HHHHHhh-ccc-------------------------ee--------cHHHHHHHH--HhhhhhhHHHHHHHhCCccccc-
Confidence 6543333 100 00 000111111 1123477788899999886654
Q ss_pred hhhhhcCCCceeEEEEEeecC-ceEEEEEEEEEc--Cc--ceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCC
Q 003349 628 EAAERVAAPGISVGLVWTNFG-GEVQFVEATAMR--GK--GELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMN 702 (828)
Q Consensus 628 ~~~~~~~~~G~v~g~~~~~~~-g~~~~ie~~~~~--g~--~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~ 702 (828)
....+...+|+++|++|.+.+ |.++.||+.+.+ |. |.++++|+++++||||++++.++++++ .+
T Consensus 420 ~~~~~g~~vG~v~glav~g~~~G~v~~Ievev~~~~g~~~g~~~ltG~l~~~~kES~~~v~a~l~~~-----------~g 488 (637)
T PRK13765 420 LFVTEGGEVGRVNGLAVMGEDSGIVLPIMAEVTPAQSKEEGKVIATGKLKEIAKEAVQNVSAIIKKF-----------TG 488 (637)
T ss_pred hhhccccceeEEEEEEEeccCceEEEEEEEEEEecCCCCCCeEEeCCCcHHHHHHHHHHHHHHHHhc-----------cc
Confidence 333446678999999999998 887778777766 44 899999999999999999999999953 34
Q ss_pred C-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEee
Q 003349 703 L-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVIL 781 (828)
Q Consensus 703 ~-~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~vii 781 (828)
+ ++++|+|||+++++.+|+|||||||+|+|++||+.++|++++++|||||+|+|+|+||||+.+|+.+|.+.|+++|||
T Consensus 489 ~~~~~~~i~I~~~~~~~~kdG~SadLaia~AllSal~~~pv~~~~a~tGELsL~G~V~pVgGv~eki~~A~~~G~k~ViI 568 (637)
T PRK13765 489 KDISNYDIHIQFVQTYEGVEGDSASISVATAVISALENIPVDQSVAMTGSLSVRGDVLPVGGVTYKIEAAAEAGIKKVII 568 (637)
T ss_pred ccCCCeEEEEEEcCcccCCCCCcchHHHHHHHHHHccCCCCCCCEEEEEEECCCceEEecCCHHHHHHHHHHCCCCEEEE
Confidence 5 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChhhhccChhhhhCCcEEEEcCCHHHHHHHHHcCC
Q 003349 782 PERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 819 (828)
Q Consensus 782 P~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~~~ 819 (828)
|.+|.+++. +|+++..+++|++|+|+.||++++|.++
T Consensus 569 P~~N~~e~~-l~~~v~~~i~I~~V~~l~eal~~al~~~ 605 (637)
T PRK13765 569 PKSNEQDVM-IEDEYEDKIEIIPVSTISEVLEHALVGG 605 (637)
T ss_pred CHHHHhhcc-chhhhcCCCEEEEeCCHHHHHHHHhhCC
Confidence 999999986 8888999999999999999999998754
No 8
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=100.00 E-value=4.4e-43 Score=407.94 Aligned_cols=338 Identities=26% Similarity=0.383 Sum_probs=259.8
Q ss_pred CcEEEEecccccCCCCCCChHHHHHHhcCcccccccccc--cC-----CeeecCCCcEEEEecCCC--CCCCccccCceE
Q 003349 408 NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDH--YL-----NVPFDLSKVIFVATANRA--QPIPPPLLDRME 478 (828)
Q Consensus 408 ~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~--~~-----~~~~~~~~viiI~TtN~~--~~l~~aLl~R~~ 478 (828)
++++||||++.+.+.. +..|+++|+..+....... .. ..++ ..++.+|+++|+. ..++|+|++||.
T Consensus 218 gGtL~Ldei~~L~~~~----q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~i-p~dvrvIa~~~~~~l~~l~~~l~~rf~ 292 (608)
T TIGR00764 218 KGVLYIDEIKTMPLEV----QQYLLTALQDKKFPITGQSENSSGAMVRTEPV-PCDFILVASGNLDDLEGMHPALRSRIR 292 (608)
T ss_pred CCEEEEEChHhCCHHH----HHHHHHHHHhCcEEecCccccccccccCCCCC-ccceEEEEECCHHHHhhcCHHHHHHhc
Confidence 4599999999999766 8999999976542211100 00 0111 2257899999975 589999999997
Q ss_pred ---E-EEcCC---CCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH----HHHHHHHHHHH
Q 003349 479 ---V-IELPG---YTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL----ERNLAALARAA 547 (828)
Q Consensus 479 ---~-i~~~~---~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l----~~~i~~l~~~a 547 (828)
+ +.|+. .+.+.+.++++ ++ .+..+++|. ...++++++..+++.+++.+|.|.. .|.|.+++|.|
T Consensus 293 ~y~v~v~~~~~~~~~~e~~~~~~~-~i-~~~~~r~G~---l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 293 GYGYEVYMKDTMPDTPENRDKLVQ-FV-AQEVKKDGR---IPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred CCeEEEEeeccCCCCHHHHHHHHH-HH-HHHHHHhCC---CCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 3 44433 34555655544 33 233344432 2479999999999988888998887 79999999998
Q ss_pred HHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeeccCCCcccccccccccCcceeecccchh-----------
Q 003349 548 AVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLE----------- 616 (828)
Q Consensus 548 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~----------- 616 (828)
.. ..+..+ ...++.++++
T Consensus 368 ~~-iA~~~~--------------------------------------------------~~~I~~ehV~~Ai~~~~~~~~ 396 (608)
T TIGR00764 368 GD-IAKSSG--------------------------------------------------KVYVTAEHVLKAKKLAKTLEK 396 (608)
T ss_pred HH-HHHhcC--------------------------------------------------CceecHHHHHHHHHHHHHHHH
Confidence 43 232200 0123333443
Q ss_pred ----hccCCCccCchhhhhhcCCCceeEEEEEee-cCceE--EEEEEEEEcC--cceEEEeeCCChHHHHHHHHHHHHHH
Q 003349 617 ----KVLGPPRFDDREAAERVAAPGISVGLVWTN-FGGEV--QFVEATAMRG--KGELHLTGQLGDVIKESAQIALTWVR 687 (828)
Q Consensus 617 ----~~l~~~~~~~~~~~~~~~~~G~v~g~~~~~-~~g~~--~~ie~~~~~g--~~~~~~~G~~~~~~~es~~~a~~~~~ 687 (828)
++++...... ..+.+...+|+++|++|.+ .+|.+ ++||+....| .++++++|++|++++||++++.++++
T Consensus 397 ~i~~~~l~~~~~~~-~~~~~g~~~G~v~glav~g~~~g~~~~i~ve~~~~~g~~~g~~~~~Gl~g~~~kEs~~~~~a~l~ 475 (608)
T TIGR00764 397 QLADNYIERKKRYK-VIVNEGGEVGRVNGLAVIGEASGIVLPIKAIVAPAESKEEGRIIATGKLGEIAKEAVTNVSALIK 475 (608)
T ss_pred HHHHHhccCcccCe-eeeecCCccEEEEEEEEeccCCceEEEEEEEEEecccCCCceEEEecCcHHHHHHHHHHHHHHHH
Confidence 4777664433 2334456789999999999 67766 6666665554 36699999999999999999999999
Q ss_pred HhhhhhhhhhhccCCC-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHH
Q 003349 688 ARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKD 766 (828)
Q Consensus 688 ~~~~~l~~~~~~~~~~-~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ 766 (828)
. ++++ ++++|+|||+++++.+|+|||+|||+|+|++||+.++|++++++|||||+|+|+|+||||+.+
T Consensus 476 ~-----------~~~~~~~~~~i~I~l~~~~~~k~G~sadlaia~AilSa~~~~pv~~~~a~tGElsL~G~V~pVgGv~~ 544 (608)
T TIGR00764 476 K-----------YTGEDISNYDIHIQFLQTYEGVEGDSASISVATAVISALEEIPVDQDVAMTGSLSVRGEVLPVGGVTE 544 (608)
T ss_pred H-----------hhCCCCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHccCCCCCCCEEEEEEECCCeEEEeeCCHHH
Confidence 4 2345 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEeecccChhhhccChhhhhCCcEEEEcCCHHHHHHHHHcCC
Q 003349 767 KILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 819 (828)
Q Consensus 767 ki~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~~~ 819 (828)
|+.+|.+.|+++||||.+|.+++. +++++.++++|++|+|+.||+++++..+
T Consensus 545 ki~~A~~~G~k~viIP~~N~~~~~-l~~~~~~~~~i~~v~~l~e~i~~l~~~~ 596 (608)
T TIGR00764 545 KIEAAIEAGIKKVIIPKSNMIDVI-LEKETEGKIEIIPVETLDEVLEHVLDLD 596 (608)
T ss_pred HHHHHHHCCCCEEEECHHHHhhhc-cccccCCCEEEEEeCCHHHHHHHHHhcC
Confidence 999999999999999999999987 5655556699999999999999988754
No 9
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=100.00 E-value=6.1e-41 Score=375.70 Aligned_cols=205 Identities=20% Similarity=0.329 Sum_probs=192.1
Q ss_pred eeecccchhhccCCCccCchhhhhh-cCCCceeEEEEEeecCce-EEEEEEEEEcCcceEEEee-CCChHHHHHHHHHHH
Q 003349 608 LVVDEAMLEKVLGPPRFDDREAAER-VAAPGISVGLVWTNFGGE-VQFVEATAMRGKGELHLTG-QLGDVIKESAQIALT 684 (828)
Q Consensus 608 ~~i~~~~L~~~l~~~~~~~~~~~~~-~~~~G~v~g~~~~~~~g~-~~~ie~~~~~g~~~~~~~G-~~~~~~~es~~~a~~ 684 (828)
+.+.+++.+.+.+.|+....+.+++ +..||+++|++|+..||. ++.||+++++|+|++.+|| .++++||||+++|++
T Consensus 466 y~~~~~~~e~~v~~pe~~~~~~i~~~p~~pGvv~GLA~t~~Gg~~Ly~IE~~~~~G~Gkl~lTG~~lg~vmKESa~~A~s 545 (675)
T TIGR02653 466 YIDNESLEEFFVSVPEQGGSKLIPAGPPKPGVVYAVTQNESGKVGLYRFEVQVSAGSGKHSVSGLGSNTTAKESIRVAFD 545 (675)
T ss_pred eEEcCCCcEEEEecCccCCCCccCCCCCCCeEEEEEEEcCCCCeEEEEEEEEEeCCCCceeeccCCchHHHHHHHHHHHH
Confidence 5678888899999999988777777 457899999999999876 5799999999999999999 899999999999999
Q ss_pred HHHHhhhhhhhhhhccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCH
Q 003349 685 WVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGV 764 (828)
Q Consensus 685 ~~~~~~~~l~~~~~~~~~~~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi 764 (828)
|+++++..+.... .+..+|+|||++.+..+++|||||+|+++||+|+++++|+++++||||||+|+|+|.||||+
T Consensus 546 y~ks~a~~l~~~~-----~~~~~DiHIHvpega~pkdGpSAGia~~~AL~Sal~~rpVr~~lAmTGEITL~G~VlpVGGl 620 (675)
T TIGR02653 546 YFKGNLVRISASA-----KFSEHDYHLHVVDLHNTGPSTEASLAALIALCSALLKRPVQEQMVILGSMTIGGVINPVQDL 620 (675)
T ss_pred HHHHhHHhcCCCc-----ccCcceEEEECCCCCCCCCCchhHHHHHHHHHHHHhCCCCCCCeEEEEEEecceEEEecCCH
Confidence 9999998887531 27899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEeecccChhhhccChhhhhCCcEEEEcCCHHHHHHHHHc
Q 003349 765 KDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 817 (828)
Q Consensus 765 ~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~ 817 (828)
.+|+.+|.++|+|+||+|.+|.+|+.++|+++++++++++|+++.||+.++++
T Consensus 621 kEKl~aA~raGaK~VLiP~~N~~Dl~~vP~ev~~kl~i~fy~d~~dal~kAL~ 673 (675)
T TIGR02653 621 AGSLQLAMDSGAKRVLIPMSSARDIPTVPAELFSKFQISFYSDPVDAVYKALG 673 (675)
T ss_pred HHHHHHHHHCCCCEEEccHHHhhhHHhCCHHHHhCCEEEEeCCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999874
No 10
>PF05362 Lon_C: Lon protease (S16) C-terminal proteolytic domain; InterPro: IPR008269 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the C-terminal proteolytic domain of the archael, bacterial and eukaryotic Lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (Lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1Z0E_E 1Z0G_E 1Z0T_F 1Z0C_A 1Z0V_A 1Z0B_A 1Z0W_A 2KJP_A 2X36_F 3K1J_B ....
Probab=100.00 E-value=3.6e-39 Score=322.60 Aligned_cols=204 Identities=48% Similarity=0.783 Sum_probs=178.0
Q ss_pred eecccchhhccCCCccCchhhhhhcCCCceeEEEEEeecCceEEEEEEEEEcCcceEEEeeCCChHHHHHHHHHHHHHHH
Q 003349 609 VVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRA 688 (828)
Q Consensus 609 ~i~~~~L~~~l~~~~~~~~~~~~~~~~~G~v~g~~~~~~~g~~~~ie~~~~~g~~~~~~~G~~~~~~~es~~~a~~~~~~ 688 (828)
.|+.++|++|||++.|.. +...+.+.+|.++|++|+..||.+++||+++++|.|++.+||.++++||||++.|++|+++
T Consensus 1 ~i~~~~l~~~lg~~~~~~-~~~~~~~~~G~v~GLa~~~~GG~~l~IE~~~~~G~G~l~~tG~lg~v~kES~~~A~~~~k~ 79 (204)
T PF05362_consen 1 TITKEDLEEYLGPPRFDP-EKISKEPKPGVVNGLAVTSMGGAVLPIEAQVIPGKGKLIITGNLGDVMKESAKIAFSYLKA 79 (204)
T ss_dssp EE-TTTCHHHH-S-SS---SSSSSSEETTEEEEEEEETTEEEEEEEEEEEEESSSEEEEESSBHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCccCc-cccccCCCCeEEEEEEEecCCCeEEEEEEeeccCcceeEeecccchhHHHHHHHHHHHHHh
Confidence 367899999999999987 5555567899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccCCCCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHH
Q 003349 689 RATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKI 768 (828)
Q Consensus 689 ~~~~l~~~~~~~~~~~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki 768 (828)
++..+... ...+..+|+|||++.++++++|||||+|+++|++|++.++|++++++|||||+++|+|.||||+.+|+
T Consensus 80 ~~~~~~~~----~~~~~~~dihi~~~~~~~~~dGpSAgla~~~al~S~~~~~~v~~~ia~TG~i~~~G~V~~Vggl~eKl 155 (204)
T PF05362_consen 80 NLKRIGID----PSNFDNYDIHIHVPDGAIPKDGPSAGLAIALALYSALTGKPVRSDIAMTGEITLGGEVLPVGGLKEKL 155 (204)
T ss_dssp HHHCCSST----CCHHGCEEEEEEESSTTTTCCGGCCHHHHHHHHHHHHHT-EBETTEEE-BEE-TTSBEE--STHHHHH
T ss_pred hhcccccc----cccccceeEEEecccccccCCCchhHHHHHHHHHHHHcCCCCCCCeeEEEEecCCCceecccchhHHH
Confidence 88766531 12256889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEeecccChhhhccChhhhhCCcEEEEcCCHHHHHHHHHc
Q 003349 769 LAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 817 (828)
Q Consensus 769 ~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~ 817 (828)
.+|.++|+++|++|.+|+.++.++|++++.+++|++|+|++||++.+|+
T Consensus 156 ~~A~~~G~k~vliP~~n~~~l~~vp~~i~~~i~i~~v~~i~ea~~~al~ 204 (204)
T PF05362_consen 156 QAAKRAGAKRVLIPASNRKDLKEVPKEIKEKIEIIFVSTIDEALEIALE 204 (204)
T ss_dssp HHHHHTT-SEEEEEGGGGGGCCTS-HHHHTSSEEEEESBHHHHHHHHBS
T ss_pred HHHHHcCCeEEEEcHHHHHHHHHhHHHHhCCcEEEEECCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998863
No 11
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-37 Score=323.74 Aligned_cols=231 Identities=23% Similarity=0.302 Sum_probs=196.5
Q ss_pred CcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeec
Q 003349 510 SEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVI 589 (828)
Q Consensus 510 ~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 589 (828)
+++-.-.+.+++|+++..-.+.|- +...+|++|..+|+ ||..+|.+
T Consensus 221 KeG~IAGPrvLEHmVDtVlyFEGd-----------~~~~~RiLR~vKNR----------------FG~t~EiG------- 266 (456)
T COG1066 221 KEGAIAGPRVLEHMVDTVLYFEGD-----------RHSRYRILRSVKNR----------------FGATNELG------- 266 (456)
T ss_pred ccccccCchheeeeeeEEEEEecc-----------CCCceeeeehhccc----------------CCccccee-------
Confidence 445556778888888832222221 12345677776666 77777766
Q ss_pred cCCCcccccccccccCcceeecccchhhccCCCccCchhhhhhcCCCceeEEEEEeecCceEEEEEEEEEc---CcceEE
Q 003349 590 PMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMR---GKGELH 666 (828)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~i~~~~L~~~l~~~~~~~~~~~~~~~~~G~v~g~~~~~~~g~~~~ie~~~~~---g~~~~~ 666 (828)
.|.|++++|.++.+|+.+|..++ ....||.+...++.|+...+++||+.+++ ++|++.
T Consensus 267 -----------------vFeM~~~GL~eV~npS~lFL~er--~~~~~GS~v~~~~EGtRpllvEvQALv~~s~~~nPrR~ 327 (456)
T COG1066 267 -----------------VFEMTENGLREVSNPSALFLSER--GEQTPGSAVVVVMEGTRPLLVEIQALVSPSSFGNPRRV 327 (456)
T ss_pred -----------------EEEEecCCeeEecCcHHhHhhcC--CCCCCCcEEEEEEecccceEEEeeeccccccCCCCceE
Confidence 69999999999999999998443 45578988888888887788888887765 889999
Q ss_pred EeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCCC-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCC
Q 003349 667 LTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRAD 745 (828)
Q Consensus 667 ~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~~-~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~ 745 (828)
.+| |+.||+.++.++++|+.|+ +.++|+|+|+ .||+++++|++|||+++|++||+.++|+|++
T Consensus 328 ~~G---------------~D~nRl~mllAVLek~~gl~l~~~Dvyvnv-aGG~ki~EPAaDLAva~Al~SS~~~~~lp~~ 391 (456)
T COG1066 328 AVG---------------LDQNRLAMLLAVLEKRLGLPLGDQDVYVNV-AGGVKVTEPAADLAVALALVSSFRNRPLPQD 391 (456)
T ss_pred Eec---------------cChhHHHHHHHHHHHhcCCcccCccEEEEc-cCCEecCCchHHHHHHHHHHHHhcCCCCCCC
Confidence 999 4999999999999999999 9999999999 9999999999999999999999999999999
Q ss_pred EEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccChhhhccChhhhhCCcEEEEcCCHHHHHHHHHc
Q 003349 746 TAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 817 (828)
Q Consensus 746 ~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~ 817 (828)
++|+|||+|+|+||||..+..|+++|.++|||++|+|..|.. .| .++++++|+++.|++++++.
T Consensus 392 ~v~~GEvgL~GeIR~V~~~~~RlkEA~klGFk~aivP~~~~~----~~----~~~~~~~v~~l~~a~~~~~~ 455 (456)
T COG1066 392 TVVFGEVGLSGEIRPVPRGERRLKEAAKLGFKRAIVPKGNIP----LP----EGIKVIGVSTLAEALEVVFD 455 (456)
T ss_pred eEEEEeeccCceeeecCcHHHHHHHHHHcCCCEEEccCCcCC----CC----CCceEEEechHHHHHHHHhc
Confidence 999999999999999999999999999999999999999864 22 49999999999999998764
No 12
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-35 Score=335.83 Aligned_cols=332 Identities=24% Similarity=0.379 Sum_probs=274.8
Q ss_pred HHHHHHHhCCCCC---ChhHHH----HHHHHHHHcCCChhhHHHHHHHHHHHHhcCCCCCC-------------------
Q 003349 224 MRAIKEELGDNDD---DEDDLV----ALERKMQSAGMPSNIWKHVQKELRRLKKMQPQQPG------------------- 277 (828)
Q Consensus 224 l~~l~~~~~~~~~---~~~~~~----~~~~~l~~~~lp~~a~~~~~~e~~~l~~~~~~~~~------------------- 277 (828)
|+.+++.|+.-.. ....+. -..+||..+.+|++|++.+++.+++++.... .+.
T Consensus 342 LrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~ 420 (786)
T COG0542 342 LRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEAL 420 (786)
T ss_pred HHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHH
Confidence 5566666654433 222222 3478999999999999999999988764322 111
Q ss_pred -----------------------------------cchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHH
Q 003349 278 -----------------------------------YTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVK 322 (828)
Q Consensus 278 -----------------------------------~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~ 322 (828)
..++..+++.|++||.......+...+..+++.|.+.++||++++
T Consensus 421 ~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV 500 (786)
T COG0542 421 EREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAV 500 (786)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHH
Confidence 123778899999999999998888899999999999999999999
Q ss_pred HHHHHHHHHhhh---CCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCc---CchhhhccCcccccccC
Q 003349 323 QRIIEYLAVRKL---KPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGV---KDEADIRGHRRTYIGSM 393 (828)
Q Consensus 323 ~~l~~~l~~~~~---~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~---~~~~~l~g~~~~~vg~~ 393 (828)
..+...+...+. .++.+..++||.||+|||||.||++||..+. ..+++++||++ ++.+.+.|.+++|+|+.
T Consensus 501 ~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGye 580 (786)
T COG0542 501 EAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYE 580 (786)
T ss_pred HHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceec
Confidence 999999877543 2334445899999999999999999999996 78999999987 66889999999999998
Q ss_pred c-chHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-----
Q 003349 394 P-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----- 467 (828)
Q Consensus 394 ~-g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~----- 467 (828)
. |.+++++++.|+ +|++||||+|++|+. ++.|||+||.+ +++|.. |+++||+|++||||||.+.
T Consensus 581 eGG~LTEaVRr~Py--SViLlDEIEKAHpdV----~nilLQVlDdG---rLTD~~-Gr~VdFrNtiIImTSN~Gs~~i~~ 650 (786)
T COG0542 581 EGGQLTEAVRRKPY--SVILLDEIEKAHPDV----FNLLLQVLDDG---RLTDGQ-GRTVDFRNTIIIMTSNAGSEEILR 650 (786)
T ss_pred cccchhHhhhcCCC--eEEEechhhhcCHHH----HHHHHHHhcCC---eeecCC-CCEEecceeEEEEecccchHHHHh
Confidence 5 689999999875 499999999999998 99999999964 455554 8999999999999999862
Q ss_pred -----------------------CCCccccCceE-EEEcCCCCHHHHHHHHHHhhcH--HHHHhcCCCCcccccCHHHHH
Q 003349 468 -----------------------PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIP--RVLDQHGLGSEFLQIPEAMVK 521 (828)
Q Consensus 468 -----------------------~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~--~~~~~~~~~~~~~~i~~~~l~ 521 (828)
.+.|+|++|++ +|.|.+++.+...+|+..++.. ..+.++++ .+.+++++.+
T Consensus 651 ~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i---~l~~s~~a~~ 727 (786)
T COG0542 651 DADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGI---TLELSDEAKD 727 (786)
T ss_pred hccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCc---eEEECHHHHH
Confidence 68999999998 9999999999999999998853 23334444 5899999999
Q ss_pred HHHH-HhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeecc
Q 003349 522 LVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIP 590 (828)
Q Consensus 522 ~l~~-~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 590 (828)
+|++ .|...+|+|+|+|.|+.-+ .++|++.+|+|.+.++..|.+++..
T Consensus 728 ~l~~~gyd~~~GARpL~R~Iq~~i---------------------~~~La~~iL~g~~~~~~~v~v~~~~ 776 (786)
T COG0542 728 FLAEKGYDPEYGARPLRRAIQQEI---------------------EDPLADEILFGKIEDGGTVKVDVDD 776 (786)
T ss_pred HHHHhccCCCcCchHHHHHHHHHH---------------------HHHHHHHHHhcccCCCcEEEEEecC
Confidence 9997 7888999999999998876 4578888999999999988877754
No 13
>PRK11823 DNA repair protein RadA; Provisional
Probab=100.00 E-value=8.6e-35 Score=328.05 Aligned_cols=187 Identities=24% Similarity=0.339 Sum_probs=171.3
Q ss_pred ceeecccchhhccCCCccCchhhhhhcCCCceeEEEEEeecCceEEEEEEEEEc---CcceEEEeeCCChHHHHHHHHHH
Q 003349 607 PLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMR---GKGELHLTGQLGDVIKESAQIAL 683 (828)
Q Consensus 607 ~~~i~~~~L~~~l~~~~~~~~~~~~~~~~~G~v~g~~~~~~~g~~~~ie~~~~~---g~~~~~~~G~~~~~~~es~~~a~ 683 (828)
.|.|+++++..+.+|+.++...+ +...+|.+.+.++.|+.+.+++||+.+++ |.|+++++|+++.
T Consensus 255 ~f~it~~Gi~~v~~ps~~~~~~~--~~~~~g~~~~~~~~G~~~~~veVea~v~~~~~g~p~~~~vGl~~~---------- 322 (446)
T PRK11823 255 VFEMTEQGLREVSNPSELFLSER--DENVPGSAVTVTMEGTRPLLVEIQALVSPTSFGNPRRTAVGLDSN---------- 322 (446)
T ss_pred EEEEcCCCceECCCHHHHHhcCC--CCCCCceEEEEEEEcccceEEEEEEeecCCcCCCCceEEecCCHH----------
Confidence 58999999999999998887332 34568999999999999999999999988 9999999998443
Q ss_pred HHHHHhhhhhhhhhhccCCC-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecC
Q 003349 684 TWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVG 762 (828)
Q Consensus 684 ~~~~~~~~~l~~~~~~~~~~-~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~ 762 (828)
|+.+|.|++++++|+ |+.+|||||++ ++++|+||++|||||+||+||+.++|++.+++|+|||+|+|+||||+
T Consensus 323 -----Rv~~~~Avl~~~~g~~~~~~~i~vnla-~~~~k~g~~~DLaIa~ailsa~~~~~~~~~~~~~GEl~L~G~vr~v~ 396 (446)
T PRK11823 323 -----RLAMLLAVLEKRLGLPLGDQDVYVNVV-GGLKITEPAADLAVALAIASSLRDRPLPPDTVVFGEVGLTGEIRPVP 396 (446)
T ss_pred -----HHHHHHHHHHHHcCCCCCCccEEEEcc-CCcccCCccccHHHHHHHHHhccCCCCCCCeEEEEecCCCeeEeccC
Confidence 777889999999999 99999999996 99999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCEEeecccChhhhccChhhhhCCcEEEEcCCHHHHHHHHHc
Q 003349 763 GVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 817 (828)
Q Consensus 763 gi~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~ 817 (828)
|+.+++.+|.++||+++|+|.+|..+. .+ .+++|++|+|+.|+++++|.
T Consensus 397 g~~~~~~~a~~~g~~~~ivP~~n~~e~-~~-----~~i~v~~v~~l~e~~~~l~~ 445 (446)
T PRK11823 397 RIERRLKEAAKLGFKRAIVPKGNLPKK-PP-----KGIEVIGVKTLAEALELLFG 445 (446)
T ss_pred CHHHHHHHHHHCCCCEEEeCCcccccc-cc-----CCCEEEEeCCHHHHHHHHhh
Confidence 999999999999999999999998664 33 38999999999999998875
No 14
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=100.00 E-value=3.6e-33 Score=314.75 Aligned_cols=182 Identities=25% Similarity=0.364 Sum_probs=165.0
Q ss_pred ceeecccchhhccCCCccCchhhhhhcCCCceeEEEEEeecCceEEEEEEEEEcC---cceEEEeeCCChHHHHHHHHHH
Q 003349 607 PLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRG---KGELHLTGQLGDVIKESAQIAL 683 (828)
Q Consensus 607 ~~~i~~~~L~~~l~~~~~~~~~~~~~~~~~G~v~g~~~~~~~g~~~~ie~~~~~g---~~~~~~~G~~~~~~~es~~~a~ 683 (828)
.|+|+.++|.++.+|+.++..++ ....+|.+.+.++.|+.+.+++||+.+++| .|+++++|+.+
T Consensus 269 ~f~it~~Gl~~v~~ps~~f~~~~--~~~~~g~~~~~~~~G~r~~~veVqalv~~~~~~~p~~~~~G~~~----------- 335 (454)
T TIGR00416 269 IFEMTEQGLREVLNPSAIFLSRR--EEPMSGSSITVTWEGTRPLLVEIQALVSPTSFANPRRVATGLDQ----------- 335 (454)
T ss_pred EEEEecCCceecCChhHhhhccC--CCCCCceEEEEEEEcccCEEEEEEEEecCCCCCCCCEEEEcCcc-----------
Confidence 69999999999999999888433 345679999999999999999999999887 89999999843
Q ss_pred HHHHHhhhhhhhhhhccCCC-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecC
Q 003349 684 TWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVG 762 (828)
Q Consensus 684 ~~~~~~~~~l~~~~~~~~~~-~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~ 762 (828)
+|...+.++++++.|+ |+++|||||+. |+++|+||++|||||+|++||+.++|++++++|+|||+|+|+||||+
T Consensus 336 ----~r~~~~~Avl~k~~g~~~~~~di~vNl~-ggl~~~~~~~DLaia~ailss~~~~~~~~~~~~~GElgL~Gevr~v~ 410 (454)
T TIGR00416 336 ----NRLALLLAVLEKRLGLPLADQDVFLNVA-GGVKVSEPAADLALLIAIVSSFRDRPLDPDLVFLGEVGLAGEIRPVP 410 (454)
T ss_pred ----HHHHHHHHHHHHhcCCCCCCceEEEEcc-CCcccCCccccHHHHHHHHHhCCCCCCCCCEEEEEEecCCeEEEeeC
Confidence 3666778888999999 99999999996 99999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCEEeecccChhhhccChhhhhCCcEEEEcCCHHHHH
Q 003349 763 GVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVL 812 (828)
Q Consensus 763 gi~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~ 812 (828)
|+.+++.+|.++||+++|+|.+|..+ ..+ .+++|++|+|+.|++
T Consensus 411 g~~~~~~~a~~~G~~~~ivP~~n~~e-~~~-----~~i~i~~v~~l~e~~ 454 (454)
T TIGR00416 411 SLEERLKEAAKLGFKRAIVPKANSPK-TAP-----EGIKVIGVKKVGDAL 454 (454)
T ss_pred CHHHHHHHHHHcCCCEEEeCcccccc-ccc-----CCcEEEEcCcHHHhC
Confidence 99999999999999999999999765 222 399999999999985
No 15
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.97 E-value=3e-30 Score=312.22 Aligned_cols=401 Identities=20% Similarity=0.306 Sum_probs=307.1
Q ss_pred cCChHHHHHHHHHcCCCCHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhcchhHHHHH-HHH
Q 003349 149 TVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELVDRHLQSIRVAEKIT-----QKVEGQLSKSQKEFL-LRQ 222 (828)
Q Consensus 149 ~~d~~~la~~la~~lpl~~~~kq~LLe~~d~~~Rl~~l~~~l~~~~~~l~~~~~i~-----~~i~~~~~~~~r~~~-l~~ 222 (828)
.+.+..+.|..|+.+.++.+.+|+.| .|++..+..|..+++.++.+.+.. ++++.+++..+++++ +++
T Consensus 387 pdkAi~LiD~aaa~~rl~~~~kp~~L------~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~e 460 (857)
T PRK10865 387 PDKAIDLIDEAASSIRMQIDSKPEEL------DRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEE 460 (857)
T ss_pred ChHHHHHHHHHhcccccccccChHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999988999888 688888888988888887765543 445566677777776 899
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcC----------CChhhHHHHHHHHHHHHhc-------CCCCCCcchHHHHH
Q 003349 223 QMRAIKEELGDNDDDEDDLVALERKMQSAG----------MPSNIWKHVQKELRRLKKM-------QPQQPGYTSSRVYL 285 (828)
Q Consensus 223 ql~~l~~~~~~~~~~~~~~~~~~~~l~~~~----------lp~~a~~~~~~e~~~l~~~-------~~~~~~~~~~~~~l 285 (828)
+.+..++++++.....+++++++.++.++. +....+..+.+++..+... ........++..++
T Consensus 461 q~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv 540 (857)
T PRK10865 461 EWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVL 540 (857)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHH
Confidence 999888888765555555555555554331 1111222233333333211 11234556789999
Q ss_pred HHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhh---CCCCCCCeEEEEcCCCCchhHHHHHHHH
Q 003349 286 ELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---KPDARGPVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 286 ~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~---~~~~~~~~lLL~GppGtGKT~la~~la~ 362 (828)
+.|++||.......+...+..+++.|.+.++||+.+++.+...+..... .+..+..+++|+||||||||++|++||+
T Consensus 541 ~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 541 ARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred HHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 9999999999998888899999999999999999999999998876542 2222224789999999999999999999
Q ss_pred Hh---CCCeEEEecCCcC---chhhhccCcccccccCc-chHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhc
Q 003349 363 AL---GRKFIRISLGGVK---DEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVL 435 (828)
Q Consensus 363 ~l---~~~~~~i~~~~~~---~~~~l~g~~~~~vg~~~-g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~l 435 (828)
.+ +.+++.++|+.+. ..+.+.|.+++|+|+.. +.+.+.++..+ ..|++|||++++++.. ++.|+++|
T Consensus 621 ~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p--~~vLllDEieka~~~v----~~~Ll~il 694 (857)
T PRK10865 621 FMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRP--YSVILLDEVEKAHPDV----FNILLQVL 694 (857)
T ss_pred HhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCC--CCeEEEeehhhCCHHH----HHHHHHHH
Confidence 87 3468888887753 34567888888999875 45667766654 3599999999999887 99999999
Q ss_pred CcccccccccccCCeeecCCCcEEEEecCCC-------------------------CCCCccccCceE-EEEcCCCCHHH
Q 003349 436 DPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------------------------QPIPPPLLDRME-VIELPGYTPEE 489 (828)
Q Consensus 436 d~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-------------------------~~l~~aLl~R~~-~i~~~~~~~ee 489 (828)
+.+ .+.+. .++.+++++++||+|||.. ..+.|+|++|++ ++.|.+++.++
T Consensus 695 e~g---~l~d~-~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~ed 770 (857)
T PRK10865 695 DDG---RLTDG-QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQH 770 (857)
T ss_pred hhC---ceecC-CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHH
Confidence 864 33443 4788999999999999984 157889999995 89999999999
Q ss_pred HHHHHHHhhcHH--HHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccc
Q 003349 490 KLRIAMRHLIPR--VLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDV 566 (828)
Q Consensus 490 ~~~Il~~~l~~~--~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~~~~~~ 566 (828)
..+|++..+... .+...++ .+.++++++++|++ .|+..+|+|+|++.|++.| .
T Consensus 771 l~~Iv~~~L~~l~~rl~~~gi---~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i---------------------~ 826 (857)
T PRK10865 771 IASIAQIQLQRLYKRLEERGY---EIHISDEALKLLSENGYDPVYGARPLKRAIQQQI---------------------E 826 (857)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---cCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHH---------------------H
Confidence 999999888542 2233333 47899999999998 7888999999999999988 3
Q ss_pred cccCCccccccccCCCeeEEeec
Q 003349 567 HRLGSPLLDNRLADGAEVEMEVI 589 (828)
Q Consensus 567 ~~~~~~~l~~~~~~~~~~~~~~~ 589 (828)
.|+++.+|+|.+.+|+.|.++++
T Consensus 827 ~~la~~iL~g~~~~~~~~~~~~~ 849 (857)
T PRK10865 827 NPLAQQILSGELVPGKVIRLEVN 849 (857)
T ss_pred HHHHHHHHcCcCCCCCEEEEEEE
Confidence 46777888999999998888774
No 16
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-29 Score=298.93 Aligned_cols=312 Identities=22% Similarity=0.353 Sum_probs=256.6
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHHHhcC----CCCCCcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchH
Q 003349 244 LERKMQSAGMPSNIWKHVQKELRRLKKMQ----PQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLV 319 (828)
Q Consensus 244 ~~~~l~~~~lp~~a~~~~~~e~~~l~~~~----~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~ 319 (828)
..+|+..+.+|+++++.+++.+.+.+... .......++..+++.+++||.......+...+..+++.|...++||+
T Consensus 385 s~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~ 464 (758)
T PRK11034 385 AVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQD 464 (758)
T ss_pred hhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcH
Confidence 35778889999999999999987664321 11133457899999999999999888878889999999999999999
Q ss_pred HHHHHHHHHHHHhhhC---CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcC---chhhhccCcccccccC
Q 003349 320 RVKQRIIEYLAVRKLK---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVK---DEADIRGHRRTYIGSM 393 (828)
Q Consensus 320 ~~~~~l~~~l~~~~~~---~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~---~~~~l~g~~~~~vg~~ 393 (828)
++++.+.+.+...... +..+..++||+||||||||++|+++|+.++.++++++|+.+. +.+.+.|.+.+|+|+.
T Consensus 465 ~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~ 544 (758)
T PRK11034 465 KAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544 (758)
T ss_pred HHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccc
Confidence 9999999998765321 222334799999999999999999999999999999998764 4678889888999976
Q ss_pred c-chHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC------
Q 003349 394 P-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------ 466 (828)
Q Consensus 394 ~-g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~------ 466 (828)
. +.+.+.++..+ .+|+||||||+++++. ++.|+++||++. +.+. .+.++++++++||+|||..
T Consensus 545 ~~g~L~~~v~~~p--~sVlllDEieka~~~v----~~~LLq~ld~G~---ltd~-~g~~vd~rn~iiI~TsN~g~~~~~~ 614 (758)
T PRK11034 545 QGGLLTDAVIKHP--HAVLLLDEIEKAHPDV----FNLLLQVMDNGT---LTDN-NGRKADFRNVVLVMTTNAGVRETER 614 (758)
T ss_pred ccchHHHHHHhCC--CcEEEeccHhhhhHHH----HHHHHHHHhcCe---eecC-CCceecCCCcEEEEeCCcCHHHHhh
Confidence 4 46777777655 4699999999999887 999999999643 4444 3678999999999999954
Q ss_pred -------------------CCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcH--HHHHhcCCCCcccccCHHHHHHHH
Q 003349 467 -------------------QPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIP--RVLDQHGLGSEFLQIPEAMVKLVI 524 (828)
Q Consensus 467 -------------------~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~--~~~~~~~~~~~~~~i~~~~l~~l~ 524 (828)
..+.|+|++|++ +|.|++++.++..+|+...+.. +.+..+++ .+.++++++++|+
T Consensus 615 ~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i---~l~~~~~~~~~l~ 691 (758)
T PRK11034 615 KSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGV---SLEVSQEARDWLA 691 (758)
T ss_pred cccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCC---CceECHHHHHHHH
Confidence 147899999997 8999999999999999888753 33444454 5899999999999
Q ss_pred H-HhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeec
Q 003349 525 Q-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVI 589 (828)
Q Consensus 525 ~-~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 589 (828)
+ .|+...|+|+|++.|++.+ ..|+++.+|+|.+.+|+.+.+++.
T Consensus 692 ~~~~~~~~GAR~l~r~i~~~l---------------------~~~la~~il~~~~~~~~~~~v~~~ 736 (758)
T PRK11034 692 EKGYDRAMGARPMARVIQDNL---------------------KKPLANELLFGSLVDGGQVTVALD 736 (758)
T ss_pred HhCCCCCCCCchHHHHHHHHH---------------------HHHHHHHHHhCcccCCCEEEEEEE
Confidence 6 7888999999999999988 346677788899999998888775
No 17
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=2.5e-29 Score=301.91 Aligned_cols=309 Identities=22% Similarity=0.348 Sum_probs=253.0
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHHHhcC----CCCCCcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchH
Q 003349 244 LERKMQSAGMPSNIWKHVQKELRRLKKMQ----PQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLV 319 (828)
Q Consensus 244 ~~~~l~~~~lp~~a~~~~~~e~~~l~~~~----~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~ 319 (828)
..+|+..+.+|+++++.+++.+...+... .......++.++++.++++||......+...+..+++.|.+.++||+
T Consensus 381 s~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~ 460 (731)
T TIGR02639 381 SARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQD 460 (731)
T ss_pred hhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcH
Confidence 46678888899999999998877654221 12244557899999999999998888878889999999999999999
Q ss_pred HHHHHHHHHHHHhhhC---CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcC---chhhhccCcccccccC
Q 003349 320 RVKQRIIEYLAVRKLK---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVK---DEADIRGHRRTYIGSM 393 (828)
Q Consensus 320 ~~~~~l~~~l~~~~~~---~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~---~~~~l~g~~~~~vg~~ 393 (828)
.+++.+...+...... +..+..++||+||||||||++|+++|+.++.++++++|+.+. ..+.+.|.+.+|+|+.
T Consensus 461 ~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~ 540 (731)
T TIGR02639 461 EAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFE 540 (731)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccc
Confidence 9999999988765431 222334699999999999999999999999999999998864 4577888888999987
Q ss_pred cc-hHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-----
Q 003349 394 PG-RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----- 467 (828)
Q Consensus 394 ~g-~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~----- 467 (828)
.+ .+.+.++..+ .+|+||||||+++++. ++.|+++||.+ .+.++. ++++|+++++||+|||...
T Consensus 541 ~~~~l~~~~~~~p--~~VvllDEieka~~~~----~~~Ll~~ld~g---~~~d~~-g~~vd~~~~iii~Tsn~g~~~~~~ 610 (731)
T TIGR02639 541 QGGLLTEAVRKHP--HCVLLLDEIEKAHPDI----YNILLQVMDYA---TLTDNN-GRKADFRNVILIMTSNAGASEMSK 610 (731)
T ss_pred hhhHHHHHHHhCC--CeEEEEechhhcCHHH----HHHHHHhhccC---eeecCC-CcccCCCCCEEEECCCcchhhhhh
Confidence 54 5777777765 4699999999999887 99999999964 345553 7889999999999999852
Q ss_pred --------------------CCCccccCceE-EEEcCCCCHHHHHHHHHHhhcH--HHHHhcCCCCcccccCHHHHHHHH
Q 003349 468 --------------------PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIP--RVLDQHGLGSEFLQIPEAMVKLVI 524 (828)
Q Consensus 468 --------------------~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~--~~~~~~~~~~~~~~i~~~~l~~l~ 524 (828)
.+.|+|++||+ +|.|.+++.+++.+|++..+.. ..+...+ ..+.++++++++|+
T Consensus 611 ~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~---~~l~i~~~a~~~La 687 (731)
T TIGR02639 611 PPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKN---IKLELTDDAKKYLA 687 (731)
T ss_pred ccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCC---CeEEeCHHHHHHHH
Confidence 37899999997 8999999999999999998854 2233333 35899999999999
Q ss_pred H-HhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEE
Q 003349 525 Q-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEM 586 (828)
Q Consensus 525 ~-~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 586 (828)
+ .|+...|+|.|++.|++.+ ..||++.+|+|.+.+++.+.+
T Consensus 688 ~~~~~~~~GaR~l~r~i~~~~---------------------~~~l~~~~l~~~~~~~~~~~~ 729 (731)
T TIGR02639 688 EKGYDEEFGARPLARVIQEEI---------------------KKPLSDEILFGKLKKGGSVKV 729 (731)
T ss_pred HhCCCcccCchHHHHHHHHHh---------------------HHHHHHHHHhCcCCCCCEEEE
Confidence 8 6888999999999999987 345666778888888876655
No 18
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=1.1e-27 Score=288.89 Aligned_cols=258 Identities=24% Similarity=0.324 Sum_probs=213.6
Q ss_pred CCcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhh---CCCCCCCeEEEEcCCCCc
Q 003349 276 PGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---KPDARGPVLCFVGPPGVG 352 (828)
Q Consensus 276 ~~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~---~~~~~~~~lLL~GppGtG 352 (828)
....++..+++.|++||+.....++...+..+++.|.+.++||+.+++.+.+.+..... .+..+..++||+||||||
T Consensus 529 v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvG 608 (852)
T TIGR03345 529 VDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVG 608 (852)
T ss_pred ecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCC
Confidence 44568899999999999999988888889999999999999999999999999876532 222233469999999999
Q ss_pred hhHHHHHHHHHh---CCCeEEEecCCc---CchhhhccCcccccccCc-chHHHHHHhcCCCCcEEEEecccccCCCCCC
Q 003349 353 KTSLASSIASAL---GRKFIRISLGGV---KDEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRG 425 (828)
Q Consensus 353 KT~la~~la~~l---~~~~~~i~~~~~---~~~~~l~g~~~~~vg~~~-g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~ 425 (828)
||++|+++|+.+ ...++.++|+.+ ++.+.+.|.+++|+|+.. |.+.+.+++.+ .+||+||||+++++..
T Consensus 609 KT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p--~svvllDEieka~~~v-- 684 (852)
T TIGR03345 609 KTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKP--YSVVLLDEVEKAHPDV-- 684 (852)
T ss_pred HHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCC--CcEEEEechhhcCHHH--
Confidence 999999999998 347789998876 456678899999999875 56778888765 4599999999999887
Q ss_pred ChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-----------------------------CCCccccCc
Q 003349 426 DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----------------------------PIPPPLLDR 476 (828)
Q Consensus 426 ~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-----------------------------~l~~aLl~R 476 (828)
++.|+++||.+. +.+. .|+.+++++++||+|||.+. .|.|+|++|
T Consensus 685 --~~~Llq~ld~g~---l~d~-~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnR 758 (852)
T TIGR03345 685 --LELFYQVFDKGV---MEDG-EGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGR 758 (852)
T ss_pred --HHHHHHHhhcce---eecC-CCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcc
Confidence 899999999643 3443 48899999999999999642 488999999
Q ss_pred eEEEEcCCCCHHHHHHHHHHhhcHHH--HH-hcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHHHHHH
Q 003349 477 MEVIELPGYTPEEKLRIAMRHLIPRV--LD-QHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARA 546 (828)
Q Consensus 477 ~~~i~~~~~~~ee~~~Il~~~l~~~~--~~-~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~l~~~ 546 (828)
+++|.|.+++.+++.+|+...+.... +. .++ ..+.++++++++|++ .|....|+|.|++.|+..+..
T Consensus 759 i~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~g---i~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~ 829 (852)
T TIGR03345 759 MTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHG---AELVYSEALVEHIVARCTEVESGARNIDAILNQTLLP 829 (852)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcC---ceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999875421 22 223 348899999999998 555689999999999987643
No 19
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=1.8e-27 Score=288.89 Aligned_cols=284 Identities=23% Similarity=0.348 Sum_probs=232.5
Q ss_pred CCCcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhh---CCCCCCCeEEEEcCCCC
Q 003349 275 QPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---KPDARGPVLCFVGPPGV 351 (828)
Q Consensus 275 ~~~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~---~~~~~~~~lLL~GppGt 351 (828)
.....++..+++.+++||.......+...+..+.+.|.+.++||+.+++.+...+..... .+..+-..+||+|||||
T Consensus 471 ~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~Gv 550 (821)
T CHL00095 471 VVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGV 550 (821)
T ss_pred ccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCC
Confidence 345668899999999999999998878889999999999999999999999998876543 22223346899999999
Q ss_pred chhHHHHHHHHHh---CCCeEEEecCCc---CchhhhccCcccccccCc-chHHHHHHhcCCCCcEEEEecccccCCCCC
Q 003349 352 GKTSLASSIASAL---GRKFIRISLGGV---KDEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVR 424 (828)
Q Consensus 352 GKT~la~~la~~l---~~~~~~i~~~~~---~~~~~l~g~~~~~vg~~~-g~l~~~~~~~~~~~~vl~iDEid~l~~~~~ 424 (828)
|||++|+++|+.+ ..++++++++.+ +..+.+.|.+.+|+|+.. +.+.+.++..++ .|++|||+|++++..
T Consensus 551 GKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~--~VvllDeieka~~~v- 627 (821)
T CHL00095 551 GKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPY--TVVLFDEIEKAHPDI- 627 (821)
T ss_pred cHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCC--eEEEECChhhCCHHH-
Confidence 9999999999988 357888888876 345667788889999876 468888887664 599999999999887
Q ss_pred CChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-------------------------------------
Q 003349 425 GDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ------------------------------------- 467 (828)
Q Consensus 425 ~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~------------------------------------- 467 (828)
++.|+++|+.+ .+.+. .|+.+++++++||+|||...
T Consensus 628 ---~~~Llq~le~g---~~~d~-~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (821)
T CHL00095 628 ---FNLLLQILDDG---RLTDS-KGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQ 700 (821)
T ss_pred ---HHHHHHHhccC---ceecC-CCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHH
Confidence 99999999964 34444 37899999999999999642
Q ss_pred CCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHH--HHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHHH
Q 003349 468 PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPR--VLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAAL 543 (828)
Q Consensus 468 ~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~--~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~l 543 (828)
.|.|+|++|++ +|.|.+++.+++.+|+...+... .+..++ ..+.++++++++|++ .|....|+|+|++.|++.
T Consensus 701 ~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~---i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~ 777 (821)
T CHL00095 701 FFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQG---IQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRL 777 (821)
T ss_pred hcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCC---cEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHH
Confidence 25678999995 89999999999999999887642 233333 358999999999998 588899999999999998
Q ss_pred HHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeeccCC
Q 003349 544 ARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMG 592 (828)
Q Consensus 544 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 592 (828)
+ ..|+++.++.+.+..+..|.++++..+
T Consensus 778 i---------------------~~~l~~~~l~~~~~~g~~v~~~~~~~~ 805 (821)
T CHL00095 778 L---------------------EDPLAEEVLSFKIKPGDIIIVDVNDEK 805 (821)
T ss_pred H---------------------HHHHHHHHHhCccCCCCEEEEEEeCCC
Confidence 7 345666778888999999988875554
No 20
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.95 E-value=6.2e-28 Score=273.85 Aligned_cols=159 Identities=18% Similarity=0.282 Sum_probs=147.5
Q ss_pred EEEEEeecCceEEEEEEEEEcCcceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCCC-CCcccEEEEccCCCC
Q 003349 640 VGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAV 718 (828)
Q Consensus 640 ~g~~~~~~~g~~~~ie~~~~~g~~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~~-~~~~dv~i~~~~~~~ 718 (828)
++.++.|..|.++.|||.+++|.|.|+++|++++++|||++|++++++ ++|+ |+.+|||||++||++
T Consensus 2 ~s~~~~g~~~~~v~VEv~~~~Glp~f~ivGl~d~~v~Es~erVr~al~------------n~g~~~p~~~I~VNlaPggl 69 (499)
T TIGR00368 2 YSRSSLGVEAPLITIEVDISKGLPGITIVGLPETTVKESRERVKSAIK------------NSGFHFPAKRITINLAPADL 69 (499)
T ss_pred eEEEEecceeEEEEEEEEEcCCCcceEEecCcHHHHHHHHHHHHHHHH------------hcCCCCCCeeEEEEecCCCe
Confidence 567788888999999999999999999999999999999999999999 6788 999999999999999
Q ss_pred CCCCchhHHHHHHHHHHhc--cCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccChhhhccChhhh
Q 003349 719 PKDGPSAGVTLVTALVSLF--SRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAV 796 (828)
Q Consensus 719 ~~~g~sa~laia~ai~sa~--~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~ 796 (828)
+|+||++|||||+||+||. .+++++.+++|+|||+|+|+|+||+|+.+++.+|.+.||+++|||.+|..++..++
T Consensus 70 ~k~g~~~DLaIA~ailsa~~~~~~~~~~~~~~~GElgL~G~vr~V~gi~~~~~~A~~~G~~~~ivP~~n~~e~~~~~--- 146 (499)
T TIGR00368 70 PKEGGRFDLPIAIGILAASEQLDAKNLGEYLFLGELALDGKLRGIKGVLPAIALAQKSGRKFIIVPKENAEEASLID--- 146 (499)
T ss_pred eccCccccHHHHHHHHHhccCCCCCcccCEEEEEEecCCceeccCcCHHHHHHHHHHcCCCEEEechhhhhhhccCC---
Confidence 9999999999999999994 45556789999999999999999999999999999999999999999987754444
Q ss_pred hCCcEEEEcCCHHHHHHHH
Q 003349 797 LASLEIILAKRMEDVLEQA 815 (828)
Q Consensus 797 ~~~i~i~~v~~l~e~~~~~ 815 (828)
+++|++|+|+.|++.++
T Consensus 147 --~i~v~~v~~L~e~~~~l 163 (499)
T TIGR00368 147 --GLNIYGADHLKEVVKFL 163 (499)
T ss_pred --CcEEEEchhHHHHHHHh
Confidence 99999999999999976
No 21
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.4e-28 Score=249.98 Aligned_cols=228 Identities=25% Similarity=0.344 Sum_probs=182.2
Q ss_pred CCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCCC-------CCCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 291 LPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 291 iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~-------~~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
+|.............+.+.+...++.|+++.++.|.+.+..+..+|. .++.++|||||||||||.||+|+|+.
T Consensus 129 Lp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 129 LPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 44444333333445555667788999999999999999988776553 46778999999999999999999999
Q ss_pred hCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCCC-----CC--hHHHHHHhc
Q 003349 364 LGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVR-----GD--PASALLEVL 435 (828)
Q Consensus 364 l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~~-----~~--~~~~Ll~~l 435 (828)
.+..|+++..|++.. +|+|+.+..+++.|..|....| ||||||||.+..++. +| .|.+++++|
T Consensus 209 T~AtFIrvvgSElVq---------KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL 279 (406)
T COG1222 209 TDATFIRVVGSELVQ---------KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELL 279 (406)
T ss_pred cCceEEEeccHHHHH---------HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHH
Confidence 999999998776543 8999999899999998876544 999999999987662 22 377888887
Q ss_pred CcccccccccccCCeeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcc
Q 003349 436 DPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEF 512 (828)
Q Consensus 436 d~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~ 512 (828)
.+ ..+|.. ..++-||++||+++.|||||++ ||| .|+||.|+.+.|.+|++.|..+.
T Consensus 280 ~q--lDGFD~--------~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM----------- 338 (406)
T COG1222 280 NQ--LDGFDP--------RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM----------- 338 (406)
T ss_pred Hh--ccCCCC--------CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-----------
Confidence 63 344443 3578999999999999999998 998 79999999999999999996432
Q ss_pred cccCHH-HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 513 LQIPEA-MVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 513 ~~i~~~-~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.++++ -++.++..+.+.+| +.|..+|.+|.+.++|+
T Consensus 339 -~l~~dvd~e~la~~~~g~sG-----AdlkaictEAGm~AiR~ 375 (406)
T COG1222 339 -NLADDVDLELLARLTEGFSG-----ADLKAICTEAGMFAIRE 375 (406)
T ss_pred -cCccCcCHHHHHHhcCCCch-----HHHHHHHHHHhHHHHHh
Confidence 22222 25566776777778 89999999999999998
No 22
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.95 E-value=1.4e-25 Score=272.98 Aligned_cols=280 Identities=24% Similarity=0.362 Sum_probs=231.0
Q ss_pred CCcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhh---CCCCCCCeEEEEcCCCCc
Q 003349 276 PGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---KPDARGPVLCFVGPPGVG 352 (828)
Q Consensus 276 ~~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~---~~~~~~~~lLL~GppGtG 352 (828)
....++..+++.++++|.......+...+..+++.|.+.++||+.+++.+...+..... .+..+...+||+||||||
T Consensus 528 v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvG 607 (852)
T TIGR03346 528 VTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVG 607 (852)
T ss_pred cCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCC
Confidence 45668899999999999999988888889999999999999999999999998876542 223344579999999999
Q ss_pred hhHHHHHHHHHh---CCCeEEEecCCcC---chhhhccCcccccccCc-chHHHHHHhcCCCCcEEEEecccccCCCCCC
Q 003349 353 KTSLASSIASAL---GRKFIRISLGGVK---DEADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRG 425 (828)
Q Consensus 353 KT~la~~la~~l---~~~~~~i~~~~~~---~~~~l~g~~~~~vg~~~-g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~ 425 (828)
||++|++||+.+ +.++.+++|+.+. ..+.+.|.+++|+|+.. |.+++.++..+. .|+|||||++++++.
T Consensus 608 Kt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~--~vlllDeieka~~~v-- 683 (852)
T TIGR03346 608 KTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPY--SVVLFDEVEKAHPDV-- 683 (852)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCC--cEEEEeccccCCHHH--
Confidence 999999999988 3578899988753 34567888889999864 677888777653 599999999999887
Q ss_pred ChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-------------------------CCCccccCceE-E
Q 003349 426 DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-------------------------PIPPPLLDRME-V 479 (828)
Q Consensus 426 ~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-------------------------~l~~aLl~R~~-~ 479 (828)
++.|+++|+++ .+.+. .++.+++++++||+|||... .+.|+|++|++ +
T Consensus 684 --~~~Ll~~l~~g---~l~d~-~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~I 757 (852)
T TIGR03346 684 --FNVLLQVLDDG---RLTDG-QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEI 757 (852)
T ss_pred --HHHHHHHHhcC---ceecC-CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeE
Confidence 99999999865 34444 37899999999999999842 37789999996 8
Q ss_pred EEcCCCCHHHHHHHHHHhhcH--HHHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 003349 480 IELPGYTPEEKLRIAMRHLIP--RVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQEQ 556 (828)
Q Consensus 480 i~~~~~~~ee~~~Il~~~l~~--~~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~ 556 (828)
+.|.+++.+++.+|+...+.. +.+...++ .+.++++++++|++ .|+...|+|+|++.|++.+
T Consensus 758 ivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~---~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i------------ 822 (852)
T TIGR03346 758 VVFHPLGREQIARIVEIQLGRLRKRLAERKI---TLELSDAALDFLAEAGYDPVYGARPLKRAIQREI------------ 822 (852)
T ss_pred EecCCcCHHHHHHHHHHHHHHHHHHHHHCCC---eecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH------------
Confidence 999999999999999888753 23344443 37899999999998 4777899999999999887
Q ss_pred hhcCCCCccccccCCccccccccCCCeeEEeec
Q 003349 557 EQALPSSKDVHRLGSPLLDNRLADGAEVEMEVI 589 (828)
Q Consensus 557 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 589 (828)
..|+++.+|+|.+..|+.+.++++
T Consensus 823 ---------~~~l~~~~l~~~~~~~~~~~~~~~ 846 (852)
T TIGR03346 823 ---------ENPLAKKILAGEVADGDTIVVDVE 846 (852)
T ss_pred ---------HHHHHHHHHhCCCCCCCEEEEEee
Confidence 446777888899999998887763
No 23
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=99.94 E-value=1.6e-26 Score=211.33 Aligned_cols=120 Identities=28% Similarity=0.532 Sum_probs=116.4
Q ss_pred EEEEEEcCcceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCCC-CCcccEEEEccCCCCCCCCchhHHHHHHH
Q 003349 654 VEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTA 732 (828)
Q Consensus 654 ie~~~~~g~~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~~-~~~~dv~i~~~~~~~~~~g~sa~laia~a 732 (828)
||+.+++|.|.++++|+++..++||.+|+++++. ++|+ |++++|+||+.+++++|.||++|||+|+|
T Consensus 1 VEv~~~~Glp~~~ivGl~~~av~esr~Rv~~al~------------~~g~~~p~~~i~VNlap~~l~k~g~~~DLaIA~a 68 (121)
T PF13541_consen 1 VEVDISRGLPSFNIVGLPDTAVKESRERVRSALK------------NSGFPFPNQDITVNLAPADLKKEGPAFDLAIAIA 68 (121)
T ss_pred CEEEEcCCCCceEEecCchHHHHHHHHHHHHHHH------------hcCCCCCcceeeeEEEeCCEEEeeeeehHHHHHH
Confidence 6899999999999999999999999999999999 4678 99999999999999999999999999999
Q ss_pred HHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccC
Q 003349 733 LVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERN 785 (828)
Q Consensus 733 i~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n 785 (828)
++|++.++|++.+++|+|||+|+|+|+||.|+.+++.+|.++||+++|+|++|
T Consensus 69 ilsa~~~~~~~~~~~~~GEl~L~G~ir~v~~~~~~~~~A~~~G~~~vivP~~N 121 (121)
T PF13541_consen 69 ILSAFGQIPIPEDTVFIGELGLDGEIRPVPGILPRIIEAKKLGFKRVIVPKAN 121 (121)
T ss_pred HHHhCCCcccCCCEEEEEEecCCccEEecCcHHHHHHHHHHCCCCEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999987
No 24
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.2e-26 Score=254.31 Aligned_cols=210 Identities=24% Similarity=0.356 Sum_probs=178.0
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHHhhhCCC-------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCc
Q 003349 306 AAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKD 378 (828)
Q Consensus 306 ~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~-------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~ 378 (828)
+..++-.++|.|++++|+.+.+.+.++..++. .++.++|||||||||||++|+++|+..+.+|..+...++.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 34455567899999999999999988765442 56778999999999999999999999999999998777665
Q ss_pred hhhhccCcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCCCCC-------hHHHHHHhcCcccccccccccCCe
Q 003349 379 EADIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNV 450 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~~~~-------~~~~Ll~~ld~~~~~~~~~~~~~~ 450 (828)
+|+|+.+..+++.|+++....| |+||||||.+...+.++ ..+.||.-||+...
T Consensus 507 ---------k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~---------- 567 (693)
T KOG0730|consen 507 ---------KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA---------- 567 (693)
T ss_pred ---------HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc----------
Confidence 7999999999999999876555 99999999999877432 36888888885421
Q ss_pred eecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHH-HHHHHHHH
Q 003349 451 PFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQR 526 (828)
Q Consensus 451 ~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~-~l~~l~~~ 526 (828)
.++++||++||+++.+|+||+| ||| +|++|.|+.+.|.+|++.++. ...++++ .++.|++.
T Consensus 568 ---~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k------------kmp~~~~vdl~~La~~ 632 (693)
T KOG0730|consen 568 ---LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK------------KMPFSEDVDLEELAQA 632 (693)
T ss_pred ---cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh------------cCCCCccccHHHHHHH
Confidence 3589999999999999999999 998 899999999999999999863 2344444 57788888
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 527 YTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 527 ~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.++++| +.|..+|++|+..++++
T Consensus 633 T~g~SG-----Ael~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 633 TEGYSG-----AEIVAVCQEAALLALRE 655 (693)
T ss_pred hccCCh-----HHHHHHHHHHHHHHHHH
Confidence 888888 89999999999999988
No 25
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.7e-25 Score=254.56 Aligned_cols=340 Identities=24% Similarity=0.316 Sum_probs=229.7
Q ss_pred CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccc--cccCCeeec----CCCcEEEEecCCCC--CCCccccCceE
Q 003349 407 CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFN--DHYLNVPFD----LSKVIFVATANRAQ--PIPPPLLDRME 478 (828)
Q Consensus 407 ~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~--~~~~~~~~~----~~~viiI~TtN~~~--~l~~aLl~R~~ 478 (828)
+.+||||||+..+.... +..+|..|...+.-.+. +...+.++. .-++.+|+..|... .+.+++.+|.+
T Consensus 225 ngGVLiIdei~lL~~~~----~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~ 300 (647)
T COG1067 225 NGGVLIIDEIGLLAQPL----QWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIE 300 (647)
T ss_pred cCcEEEEEhhhhhCcHH----HHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHh
Confidence 35699999999998655 66666655433111110 111122221 12457777777654 66666666653
Q ss_pred ---E-EEcC--CC-CHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH----HHHHHHHHHHHH
Q 003349 479 ---V-IELP--GY-TPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN----LERNLAALARAA 547 (828)
Q Consensus 479 ---~-i~~~--~~-~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~----l~~~i~~l~~~a 547 (828)
+ .+|. .+ +++.+.+.+..+... +.+. ..-..++.+++..|+....+.+|-+. --++|.++++.|
T Consensus 301 g~~y~ae~~~~m~~~~~nr~k~~~~~~q~--v~~d---~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A 375 (647)
T COG1067 301 GFGYEAEFEDTMPITDANRSKLVQFYVQE--LARD---GNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREA 375 (647)
T ss_pred hcceEEEEcCCCCCChHHHHHHHHHHHHH--HHhc---CCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHh
Confidence 2 4554 33 567777777666432 2222 12368899999998875444444221 126777777755
Q ss_pred HHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeeccCCCcccccccccccCcceeecccchhhccCCCccCch
Q 003349 548 AVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDR 627 (828)
Q Consensus 548 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~l~~~~~~~~ 627 (828)
+.-+... + .-.++.+++++++....+...
T Consensus 376 ~~ia~~~--~-------------------------------------------------~~~I~ae~Ve~a~~~~~~~e~ 404 (647)
T COG1067 376 GDIAVSE--G-------------------------------------------------RKLITAEDVEEALQKRELREG 404 (647)
T ss_pred hHHHhcC--C-------------------------------------------------cccCcHHHHHHHHHhhhhHHH
Confidence 5433222 0 012444455555444322220
Q ss_pred hh--------------h-hhcCCCceeEEEEEeecCc-----eEEEEEEEEEcCcceEEEeeCCChHHHHHHHHHHHHHH
Q 003349 628 EA--------------A-ERVAAPGISVGLVWTNFGG-----EVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVR 687 (828)
Q Consensus 628 ~~--------------~-~~~~~~G~v~g~~~~~~~g-----~~~~ie~~~~~g~~~~~~~G~~~~~~~es~~~a~~~~~ 687 (828)
.. + -.....|+++|+++.+.+| .+..|-+.+..|.|++.-++..++.. +++...-..++
T Consensus 405 ~l~e~~~~~~~~~~~li~t~G~~VG~ingLsV~~~~~~~~~g~p~~is~~~~~g~g~i~d~er~~~la-g~I~~k~~mI~ 483 (647)
T COG1067 405 QLAERYIEDIKGGQILIETEGERVGQINGLSVIEVPGHHAFGEPARISCAVHKGDGEIVDIERKAELA-GNIHNKGMMIK 483 (647)
T ss_pred HHHHHHHHHHhcceEEEeeccceeeeeeeeEEEecCCcccccceeEEEeEEecCCCceeehhhhhhhh-hhHHHHHHHHH
Confidence 00 0 1134679999999999865 36666667778999999998766655 77666555555
Q ss_pred HhhhhhhhhhhccCCC-CCcccEEEEccCCCCC------CCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeee
Q 003349 688 ARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVP------KDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLP 760 (828)
Q Consensus 688 ~~~~~l~~~~~~~~~~-~~~~dv~i~~~~~~~~------~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~ 760 (828)
. ..+. ..++|+||+|+.+..- +||+||++|+|+|++||+.++|+++++||||+|++.|+|.|
T Consensus 484 ~-----------~~~~~~~~~d~~i~fs~s~~~eqsy~~vDGDSAS~A~~~aliSAl~~~Pv~Q~iAiTGsi~q~G~Vqp 552 (647)
T COG1067 484 Q-----------AFLMSILNYDIHIPFSASLVFEQSYGEVDGDSASLAEACALISALSKIPVDQDIAITGSIDQFGEVQP 552 (647)
T ss_pred H-----------HhcCCcccCceeeEEeeEEEEEeecccccCchHHHHHHHHHHHHHhcCCCccceeEEeeeccCCceee
Confidence 2 1111 5789999999554444 59999999999999999999999999999999999999999
Q ss_pred cCCHHHHHH-------HHHHcCCCEEeecccChhhhccChhhh----h-CCcEEEEcCCHHHHHHHHHcCC
Q 003349 761 VGGVKDKIL-------AAHRYGIKRVILPERNLKDLVEVPAAV----L-ASLEIILAKRMEDVLEQAFEGG 819 (828)
Q Consensus 761 v~gi~~ki~-------~A~~~G~k~viiP~~n~~~~~~~~~~~----~-~~i~i~~v~~l~e~~~~~~~~~ 819 (828)
|||+.+||. +|...|.+.||||++|.+++.. +.++ + +.++|++|+|+.||+..++..+
T Consensus 553 VGGV~eKIEgf~~~c~~~~~~G~q~ViIP~~N~~~l~l-~~~v~~av~~g~f~I~~V~~i~eal~~~~~~~ 622 (647)
T COG1067 553 VGGVNEKIEGFFRVCQAAGLTGEQGVIIPKANVKDLSL-SEDVVKAVKEGKFEIWPVETIDEALELLLGKG 622 (647)
T ss_pred cCCcchhhhhhHHHHHHHhhcCCceEEeccchHhhhhc-cHHHHHHhhcCceEEEEeCcHHHHHHHHhCCC
Confidence 999999999 9999999999999999999863 3333 3 3589999999999999999864
No 26
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.1e-25 Score=242.36 Aligned_cols=211 Identities=23% Similarity=0.315 Sum_probs=172.5
Q ss_pred HHhhcccccchHHHHHHHHHHHHHhhhCCC-------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh
Q 003349 308 KERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 380 (828)
Q Consensus 308 ~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~-------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~ 380 (828)
+.+..++|.|+++++.++...+.++..++. ..+.++|||||||||||.||+++|++.+..|+.|...++..
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN-- 583 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN-- 583 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH--
Confidence 344457899999999999999887765443 45678999999999999999999999999999987665543
Q ss_pred hhccCcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCCCC-------ChHHHHHHhcCcccccccccccCCeee
Q 003349 381 DIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPF 452 (828)
Q Consensus 381 ~l~g~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~~~~~ 452 (828)
+|+|+++..+++.|.++..+.| ||||||+|.+.+.+.. ..+|.||.-||+...
T Consensus 584 -------kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~------------ 644 (802)
T KOG0733|consen 584 -------KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE------------ 644 (802)
T ss_pred -------HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc------------
Confidence 8999999999999999886655 9999999999987732 137889999986532
Q ss_pred cCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHH-HHHHHHH--H
Q 003349 453 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQ--R 526 (828)
Q Consensus 453 ~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~-~l~~l~~--~ 526 (828)
-.+++||++||+|+.+|||+++ ||+ .++++.|+.++|..|++.+..+ ....++++ .++.|+. .
T Consensus 645 -R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn----------~k~pl~~dVdl~eia~~~~ 713 (802)
T KOG0733|consen 645 -RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN----------TKPPLSSDVDLDEIARNTK 713 (802)
T ss_pred -ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc----------CCCCCCcccCHHHHhhccc
Confidence 3578999999999999999998 998 7899999999999999988531 22344433 4666665 4
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q 003349 527 YTREAGVRNLERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 527 ~~~~~g~R~l~~~i~~l~~~a~~~~l~~~ 555 (828)
|.++.| ++|..+||+|++.+++..
T Consensus 714 c~gftG-----ADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 714 CEGFTG-----ADLAALVREASILALRES 737 (802)
T ss_pred ccCCch-----hhHHHHHHHHHHHHHHHH
Confidence 447777 899999999999999883
No 27
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.92 E-value=1.1e-24 Score=245.80 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=154.6
Q ss_pred CceeEEEEEeecCceEEEEEEEEEcCcceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCCC-CCcccEEEEcc
Q 003349 636 PGISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNL-LQGRDIHIHFP 714 (828)
Q Consensus 636 ~G~v~g~~~~~~~g~~~~ie~~~~~g~~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~~-~~~~dv~i~~~ 714 (828)
.+.+++.++.|+.|.+|.|||.+++|.|.|+|+|+++.++|||.+|++++++ |+|| ||...|+||++
T Consensus 3 ~~~~~s~~~~G~~~~~v~VE~~~~~Glp~f~ivGl~d~~v~Es~eRvr~Al~------------n~g~~~P~~ritvnL~ 70 (506)
T PRK09862 3 LSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAII------------NSGYEYPAKKITINLA 70 (506)
T ss_pred ceEEEEEEEeceeeeEEEEEEEEcCCCcceEEeCCcHHHHHHHHHHHHHHHH------------hCCCCCCCceEEEEeC
Confidence 3578899999999999999999999999999999999999999999999999 6899 99999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCCCC--CCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccChhhhccC
Q 003349 715 AGAVPKDGPSAGVTLVTALVSLFSRKRVR--ADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEV 792 (828)
Q Consensus 715 ~~~~~~~g~sa~laia~ai~sa~~~~~~~--~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~~~~ 792 (828)
|++++|+|+++|||||+||+++...++.+ .+++|+|||+|+|+|+||.|+.+.+.+|.+.|+ ++|+|.+|..++..+
T Consensus 71 Pa~~~K~G~~~DL~IA~~iL~a~~~i~~~~l~~~~~~GEL~LdG~lr~v~g~lp~~~~a~~~g~-~~~vp~~n~~ea~~v 149 (506)
T PRK09862 71 PADLPKEGGRYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGR-KIIVAKDNEDEVGLI 149 (506)
T ss_pred CCCCCCCCccccHHHHHHHHHhcCCCCchhhhCEEEEEEecCCceEeccchHHHHHHHHHHCCC-EEEeehHHHHHHhcC
Confidence 99999999999999999999999888754 689999999999999999999999999999999 799999999998887
Q ss_pred hhhhhCCcEEEEcCCHHHHHHHHH
Q 003349 793 PAAVLASLEIILAKRMEDVLEQAF 816 (828)
Q Consensus 793 ~~~~~~~i~i~~v~~l~e~~~~~~ 816 (828)
+ +++|++|+|+.|++.++-
T Consensus 150 ~-----~~~v~~~~~L~~~~~~l~ 168 (506)
T PRK09862 150 N-----GEGCLIADHLQAVCAFLE 168 (506)
T ss_pred C-----CCeEEecCCHHHHHHHHc
Confidence 7 999999999999999863
No 28
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-24 Score=225.62 Aligned_cols=210 Identities=22% Similarity=0.263 Sum_probs=166.9
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCC------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccC
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~ 385 (828)
..+|.|++++|+.|.+.+..+.+.|. .+..++|++||||||||.||+++|.+++..|+.|+.+.+.+
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS------- 283 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS------- 283 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh-------
Confidence 35789999999999999987765432 45668999999999999999999999999999998777665
Q ss_pred cccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCCCh--------HHHHHHhcCcccccccccccCCeeecCCC
Q 003349 386 RRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGDP--------ASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~--------~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
+|-|+++..++-.|..+.. .+.+|||||||.++..+.+.. -+.||..||+.+... .. .+-
T Consensus 284 --KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~-e~--------~k~ 352 (491)
T KOG0738|consen 284 --KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTL-EN--------SKV 352 (491)
T ss_pred --hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccc-cc--------cee
Confidence 7888888777777776653 345999999999998763321 467888899764321 10 123
Q ss_pred cEEEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 457 VIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
|+|+++||.|+.+|+||++||+ .|++|.|+.+.|..+++..|.. ....++--++.|++...+++|
T Consensus 353 VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~-----------~~~~~~~~~~~lae~~eGySG--- 418 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS-----------VELDDPVNLEDLAERSEGYSG--- 418 (491)
T ss_pred EEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc-----------ccCCCCccHHHHHHHhcCCCh---
Confidence 7888999999999999999998 7999999999999999887631 112233346667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 003349 536 LERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 536 l~~~i~~l~~~a~~~~l~~~ 555 (828)
.+|.++||.|++..++++
T Consensus 419 --aDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 419 --ADITNVCREASMMAMRRK 436 (491)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 899999999999999984
No 29
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-23 Score=228.45 Aligned_cols=209 Identities=24% Similarity=0.277 Sum_probs=168.0
Q ss_pred cccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhcc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g 384 (828)
.+++.|+++....+.+.+.. ..++ -.++.++||+||||||||+||+++|++++.+|+.++...+.+
T Consensus 189 f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS------ 261 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS------ 261 (802)
T ss_pred hhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc------
Confidence 35688999999999988865 2222 246678999999999999999999999999999998777655
Q ss_pred CcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCCCC-------ChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 385 HRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
++.|+++..+++.|..+....| |+||||||.+.+++.. ...+.|+..||+..+..+ +...
T Consensus 262 ---GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~---------~g~~ 329 (802)
T KOG0733|consen 262 ---GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT---------KGDP 329 (802)
T ss_pred ---ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc---------CCCC
Confidence 7889999999999999875544 9999999999998843 236789999997543321 2345
Q ss_pred cEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 457 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
|+||++||+|+.++|+|++ ||+ .|.+..|+..+|.+|++..+.. ..+. ..++ ...|+....++.|
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~-----lrl~---g~~d---~~qlA~lTPGfVG- 397 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRG-----LRLS---GDFD---FKQLAKLTPGFVG- 397 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhh-----CCCC---CCcC---HHHHHhcCCCccc-
Confidence 8999999999999999998 998 7999999999999999987531 1111 1232 4566776677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 003349 534 RNLERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 534 R~l~~~i~~l~~~a~~~~l~~~ 555 (828)
+++..+|++|++-++++.
T Consensus 398 ----ADL~AL~~~Aa~vAikR~ 415 (802)
T KOG0733|consen 398 ----ADLMALCREAAFVAIKRI 415 (802)
T ss_pred ----hhHHHHHHHHHHHHHHHH
Confidence 899999999999999884
No 30
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.3e-23 Score=229.81 Aligned_cols=209 Identities=23% Similarity=0.378 Sum_probs=161.5
Q ss_pred hhcccccchHHHHHHHHHHHHHhhhCCC------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhc
Q 003349 310 RLDSDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 383 (828)
Q Consensus 310 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~ 383 (828)
+-.++|.|++++|..|.+.+..+..+++ .+..++|||||||||||.+|+|+|..+...|..+...+...
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN----- 743 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN----- 743 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH-----
Confidence 3456899999999999999988665443 45678999999999999999999999999998887655443
Q ss_pred cCcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCC--CCCh-------HHHHHHhcCcccccccccccCCeeec
Q 003349 384 GHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDV--RGDP-------ASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 384 g~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~--~~~~-------~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
.|+|+++.++++.|.+|+...| ||||||+|.+.|.+ .||. .+.||.-||+.... +
T Consensus 744 ----MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~-----------~ 808 (953)
T KOG0736|consen 744 ----MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS-----------S 808 (953)
T ss_pred ----HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC-----------C
Confidence 7999999999999999886544 99999999999987 2332 67888888854321 2
Q ss_pred CCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHH-HHHHHHHhhcHHHHHhcCCCCcccccCHH-HHHHHHHHhh
Q 003349 454 LSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEE-KLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYT 528 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee-~~~Il~~~l~~~~~~~~~~~~~~~~i~~~-~l~~l~~~~~ 528 (828)
...++||++||+|+.+||+|++ ||| .+++.+.+.++ +..+++...+ .+.++++ -+..+++.|.
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr------------kFkLdedVdL~eiAk~cp 876 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR------------KFKLDEDVDLVEIAKKCP 876 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHH------------HccCCCCcCHHHHHhhCC
Confidence 4578999999999999999998 999 67887766644 5556655432 1334333 2566777666
Q ss_pred h-hhchHHHHHHHHHHHHHHHHHHHHHh
Q 003349 529 R-EAGVRNLERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 529 ~-~~g~R~l~~~i~~l~~~a~~~~l~~~ 555 (828)
. ..| +++-.+|..|-+.++++.
T Consensus 877 ~~~TG-----ADlYsLCSdA~l~AikR~ 899 (953)
T KOG0736|consen 877 PNMTG-----ADLYSLCSDAMLAAIKRT 899 (953)
T ss_pred cCCch-----hHHHHHHHHHHHHHHHHH
Confidence 4 456 778888888888888774
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.89 E-value=6.4e-24 Score=236.15 Aligned_cols=300 Identities=22% Similarity=0.268 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHhc------
Q 003349 217 EFLLRQQMRAIKEELGDNDDDEDDLVALERKMQSAGMPSNIWKHVQKELRRLKKMQPQQPGYTSSRVYLELIAD------ 290 (828)
Q Consensus 217 ~~~l~~ql~~l~~~~~~~~~~~~~~~~~~~~l~~~~lp~~a~~~~~~e~~~l~~~~~~~~~~~~~~~~l~~~~~------ 290 (828)
...+++|++.++++++. .+.++..+++++...+.|+.....+.+++.+...+...+.+...+.++.+++..
T Consensus 8 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 84 (364)
T TIGR01242 8 IRKLEDEKRSLEKEKIR---LERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKPG 84 (364)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCCCC
Confidence 34567777777777653 467778888888888888887777777777665555555565555555554321
Q ss_pred ---------------CCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcC
Q 003349 291 ---------------LPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGP 348 (828)
Q Consensus 291 ---------------iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~Gp 348 (828)
+||..........+.........+++|++++++.+.+++..+..++ -.++.++||+||
T Consensus 85 ~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~Gp 164 (364)
T TIGR01242 85 ARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGP 164 (364)
T ss_pred CEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECC
Confidence 5666554333455555666777889999999999999987654432 234668999999
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCC-cEEEEecccccCCCCCC--
Q 003349 349 PGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRG-- 425 (828)
Q Consensus 349 pGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~-~vl~iDEid~l~~~~~~-- 425 (828)
||||||++|+++|+.++.+++.+..+... ..|+|.....+...|..+.... .||||||+|.+...+.+
T Consensus 165 pGtGKT~lakaia~~l~~~~~~v~~~~l~---------~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~ 235 (364)
T TIGR01242 165 PGTGKTLLAKAVAHETNATFIRVVGSELV---------RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG 235 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCEEecchHHHH---------HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC
Confidence 99999999999999999998887644322 1466766666777776655433 49999999998754421
Q ss_pred ---C--hHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHh
Q 003349 426 ---D--PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRH 497 (828)
Q Consensus 426 ---~--~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~ 497 (828)
+ .+..+.+++.... .+. ...++.||+|||.++.+++++++ ||+ .|+|+.|+.+++.+|++.+
T Consensus 236 ~~~~~~~~~~l~~ll~~ld--~~~--------~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~ 305 (364)
T TIGR01242 236 TSGDREVQRTLMQLLAELD--GFD--------PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIH 305 (364)
T ss_pred CCccHHHHHHHHHHHHHhh--CCC--------CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHH
Confidence 1 1344555443210 110 13468999999999999999997 897 7999999999999999887
Q ss_pred hcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 498 LIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 498 l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+.+ ..+. ..++ +..++..+.+..| +.|..+|+.|++.++++
T Consensus 306 ~~~-----~~l~---~~~~---~~~la~~t~g~sg-----~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 306 TRK-----MKLA---EDVD---LEAIAKMTEGASG-----ADLKAICTEAGMFAIRE 346 (364)
T ss_pred Hhc-----CCCC---ccCC---HHHHHHHcCCCCH-----HHHHHHHHHHHHHHHHh
Confidence 532 1111 1122 4555665555555 78889999999999887
No 32
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.89 E-value=4.1e-23 Score=204.90 Aligned_cols=212 Identities=24% Similarity=0.321 Sum_probs=156.9
Q ss_pred HHHHhhcccccchHHHHHHHH---HHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhh
Q 003349 306 AAKERLDSDHYGLVRVKQRII---EYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI 382 (828)
Q Consensus 306 ~~~~~l~~~i~G~~~~~~~l~---~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l 382 (828)
..+.+..++++||+++|+... +++..+.....=.+.++|||||||||||++|+++|+....+++.+..+. +
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~------l 187 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE------L 187 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHH------H
Confidence 344555678999999998875 4454444444445679999999999999999999999999999887544 3
Q ss_pred ccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCC-----CCCh---HHHHHHhcCcccccccccccCCeeec
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDV-----RGDP---ASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~-----~~~~---~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
.| .|+|....++.+.+.++... ++|+||||+|.+.-++ +||. .|+||.-||+.. .
T Consensus 188 iG---ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~-------------e 251 (368)
T COG1223 188 IG---EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK-------------E 251 (368)
T ss_pred HH---HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc-------------c
Confidence 33 57777777888888887654 4599999999998766 5554 799999998532 2
Q ss_pred CCCcEEEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhc
Q 003349 454 LSKVIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 532 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g 532 (828)
..++++|++||+++.||+++++||+ .|+|..|+.++|.+|++.+..+ . .+.++.. +.++++...+.+|
T Consensus 252 neGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~-----~-----Plpv~~~-~~~~~~~t~g~Sg 320 (368)
T COG1223 252 NEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK-----F-----PLPVDAD-LRYLAAKTKGMSG 320 (368)
T ss_pred CCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh-----C-----CCccccC-HHHHHHHhCCCCc
Confidence 3578999999999999999999997 7999999999999999998632 1 1223222 5666766555566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 003349 533 VRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 533 ~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
|++ .++++..|..+++..
T Consensus 321 -Rdi---kekvlK~aLh~Ai~e 338 (368)
T COG1223 321 -RDI---KEKVLKTALHRAIAE 338 (368)
T ss_pred -hhH---HHHHHHHHHHHHHHh
Confidence 332 234444444455543
No 33
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.6e-22 Score=199.49 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=162.1
Q ss_pred HHhhcccccchHHHHHHHHHHHHHhhhC-------CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh
Q 003349 308 KERLDSDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 380 (828)
Q Consensus 308 ~~~l~~~i~G~~~~~~~l~~~l~~~~~~-------~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~ 380 (828)
+.+...++.|++-.|+.+.+.+..+... +-.++.++|+|||||||||+|++++|+.....|+++..+++..
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq-- 227 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-- 227 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH--
Confidence 4456678999999999999988765432 2356778999999999999999999999999999998776543
Q ss_pred hhccCcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCCC----C---ChHHHHHHhcCcccccccccccCCeee
Q 003349 381 DIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVR----G---DPASALLEVLDPEQNKTFNDHYLNVPF 452 (828)
Q Consensus 381 ~l~g~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~~----~---~~~~~Ll~~ld~~~~~~~~~~~~~~~~ 452 (828)
+|.|+.+..++..|+.+....| |+||||||.+..++- | ..+..|+++|.. ..+|..
T Consensus 228 -------kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnq--mdgfdq------- 291 (408)
T KOG0727|consen 228 -------KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQ--MDGFDQ------- 291 (408)
T ss_pred -------HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHh--ccCcCc-------
Confidence 7999999999999998876544 999999999876551 1 125667777652 234433
Q ss_pred cCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHH-HHHHHHHHhh
Q 003349 453 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYT 528 (828)
Q Consensus 453 ~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~-~l~~l~~~~~ 528 (828)
..|+-+|++||+.+.++|+|++ |++ -|+||.|+..+++-++.....+ ..++++ .++.++.+-+
T Consensus 292 -~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titsk------------m~ls~~vdle~~v~rpd 358 (408)
T KOG0727|consen 292 -TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK------------MNLSDEVDLEDLVARPD 358 (408)
T ss_pred -ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc------------ccCCcccCHHHHhcCcc
Confidence 3478899999999999999998 998 6999999998887776654321 223332 3455555445
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 529 REAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 529 ~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.-+| +.|..+|++|.+.+++.
T Consensus 359 kis~-----adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 359 KISG-----ADINAICQEAGMLAVRE 379 (408)
T ss_pred ccch-----hhHHHHHHHHhHHHHHh
Confidence 5566 88999999999999987
No 34
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.4e-22 Score=230.33 Aligned_cols=281 Identities=23% Similarity=0.349 Sum_probs=224.1
Q ss_pred CcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCC--CCCeEEEEcCCCCchh
Q 003349 277 GYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDA--RGPVLCFVGPPGVGKT 354 (828)
Q Consensus 277 ~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~--~~~~lLL~GppGtGKT 354 (828)
...++....+.++++|.......+...+..+.+.|.+.|+||+++...|.+.+......... +...++|.||.|+|||
T Consensus 526 ~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt 605 (898)
T KOG1051|consen 526 GESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKT 605 (898)
T ss_pred CccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHH
Confidence 45577888899999999999988889999999999999999999999999999876642222 4447999999999999
Q ss_pred HHHHHHHHHhC---CCeEEEecCCcCchhhhccCcccccccCcc-hHHHHHHhcCCCCcEEEEecccccCCCCCCChHHH
Q 003349 355 SLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMPG-RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASA 430 (828)
Q Consensus 355 ~la~~la~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g-~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~ 430 (828)
.||+++|..+. ..+++++|+.+...+.+.|.+++|+|+..+ .+++.+++.++ .||||||||++++.. ++.
T Consensus 606 ~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~--sVVLfdeIEkAh~~v----~n~ 679 (898)
T KOG1051|consen 606 ELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPY--SVVLFEEIEKAHPDV----LNI 679 (898)
T ss_pred HHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCc--eEEEEechhhcCHHH----HHH
Confidence 99999999983 478899999988899999999999999975 89999999774 499999999999988 999
Q ss_pred HHHhcCcccccccccccCCeeecCCCcEEEEecCCCC----------------------------------------CCC
Q 003349 431 LLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----------------------------------------PIP 470 (828)
Q Consensus 431 Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~----------------------------------------~l~ 470 (828)
|+++||.+ ++.|.. |+.++++|++||+|+|... .+.
T Consensus 680 llq~lD~G---rltDs~-Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r 755 (898)
T KOG1051|consen 680 LLQLLDRG---RLTDSH-GREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFR 755 (898)
T ss_pred HHHHHhcC---ccccCC-CcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccC
Confidence 99999964 344544 8999999999999988742 245
Q ss_pred ccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHHHHHHHH
Q 003349 471 PPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAA 548 (828)
Q Consensus 471 ~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~l~~~a~ 548 (828)
++|++|.+ ++.|.+++.++..+|....+..-.....+ ......+++.+...+.. .|+..+|+|.+++.|+..+.
T Consensus 756 ~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~-~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~--- 831 (898)
T KOG1051|consen 756 KEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEE-RELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFE--- 831 (898)
T ss_pred hHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhh-hHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHH---
Confidence 67777886 68889999888888887766322111111 11346778888888775 88889999999999988872
Q ss_pred HHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeecc
Q 003349 549 VKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIP 590 (828)
Q Consensus 549 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 590 (828)
+.++..++ +.+.++..+.+.+..
T Consensus 832 ------------------~~la~~~l-~ei~~~~~~~i~~~~ 854 (898)
T KOG1051|consen 832 ------------------NRLAEALL-GEVEDGLTERILVAD 854 (898)
T ss_pred ------------------HHHhhhhe-eeecCCceEEEEecc
Confidence 23444555 677777666655533
No 35
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.88 E-value=7e-23 Score=228.63 Aligned_cols=231 Identities=23% Similarity=0.310 Sum_probs=165.7
Q ss_pred hcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHH
Q 003349 289 ADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIA 361 (828)
Q Consensus 289 ~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la 361 (828)
..+||..........+.........+++|++++++.+.+.+..+..++ -.++.++||+||||||||++|+++|
T Consensus 107 ~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia 186 (389)
T PRK03992 107 EVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVA 186 (389)
T ss_pred hcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHH
Confidence 345665544333344444445566789999999999999887654432 2455689999999999999999999
Q ss_pred HHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC-----C--hHHHHHH
Q 003349 362 SALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-----D--PASALLE 433 (828)
Q Consensus 362 ~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~-----~--~~~~Ll~ 433 (828)
+.++.+++.++++.... .|+|.....+...|..+... +.||||||+|.+...+.+ + .+..+.+
T Consensus 187 ~~~~~~~i~v~~~~l~~---------~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~ 257 (389)
T PRK03992 187 HETNATFIRVVGSELVQ---------KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQ 257 (389)
T ss_pred HHhCCCEEEeehHHHhH---------hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHH
Confidence 99999999988765432 57787777777777766543 459999999999765421 1 1334555
Q ss_pred hcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCC
Q 003349 434 VLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGS 510 (828)
Q Consensus 434 ~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~ 510 (828)
++.... .+. +..++.||+|||+++.+++++++ ||+ .|+|++|+.++|.+|++.++.+ ..+.
T Consensus 258 lL~~ld--~~~--------~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~-----~~~~- 321 (389)
T PRK03992 258 LLAEMD--GFD--------PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK-----MNLA- 321 (389)
T ss_pred HHHhcc--ccC--------CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc-----CCCC-
Confidence 543211 111 13468999999999999999997 997 7999999999999999987531 1111
Q ss_pred cccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 511 EFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 511 ~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
..+ .+..++....+..| +.|..+|++|++.++++
T Consensus 322 --~~~---~~~~la~~t~g~sg-----adl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 322 --DDV---DLEELAELTEGASG-----ADLKAICTEAGMFAIRD 355 (389)
T ss_pred --CcC---CHHHHHHHcCCCCH-----HHHHHHHHHHHHHHHHc
Confidence 112 24556666666666 78999999999998887
No 36
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.88 E-value=1.8e-21 Score=216.54 Aligned_cols=243 Identities=19% Similarity=0.295 Sum_probs=173.8
Q ss_pred cHHHHHHhhcccccchHHHHHHHHHHHHHh--hhCC--------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 303 DLKAAKERLDSDHYGLVRVKQRIIEYLAVR--KLKP--------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 303 ~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~--~~~~--------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
...++...|++.++||+.+++.+...+..+ +... .....++||+||||||||++|+++|+.++.+++.++
T Consensus 61 ~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 61 TPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 457778889999999999999997766432 1111 123468999999999999999999999999999998
Q ss_pred cCCcCchhhhccCcccccccCcchH-HHHHHhc-----CCCCcEEEEecccccCCCCCC----------ChHHHHHHhcC
Q 003349 373 LGGVKDEADIRGHRRTYIGSMPGRL-IDGLKRV-----GVCNPVMLLDEIDKTGSDVRG----------DPASALLEVLD 436 (828)
Q Consensus 373 ~~~~~~~~~l~g~~~~~vg~~~g~l-~~~~~~~-----~~~~~vl~iDEid~l~~~~~~----------~~~~~Ll~~ld 436 (828)
++.+.. .+|+|.....+ ...+..+ ...++|+||||||+++++..+ +.|++||++|+
T Consensus 141 ~~~l~~--------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Le 212 (412)
T PRK05342 141 ATTLTE--------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE 212 (412)
T ss_pred hhhccc--------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHh
Confidence 876543 25777765443 3332221 123569999999999865211 25899999998
Q ss_pred cccc------cccccccCCeeecCCCcEEEEecCCC------------------------------C-------------
Q 003349 437 PEQN------KTFNDHYLNVPFDLSKVIFVATANRA------------------------------Q------------- 467 (828)
Q Consensus 437 ~~~~------~~~~~~~~~~~~~~~~viiI~TtN~~------------------------------~------------- 467 (828)
+... ....++..-+.++.+|++||++.+.. .
T Consensus 213 g~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~ 292 (412)
T PRK05342 213 GTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIK 292 (412)
T ss_pred cCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHH
Confidence 5321 12222333345666777777544311 0
Q ss_pred -CCCccccCceE-EEEcCCCCHHHHHHHHHH---hhcHHHHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHH
Q 003349 468 -PIPPPLLDRME-VIELPGYTPEEKLRIAMR---HLIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLA 541 (828)
Q Consensus 468 -~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~---~l~~~~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~ 541 (828)
.|.|+|+.|++ ++.|.+++.+++.+|+.. .+.++..+........+.++++++++|++ .|...+|+|.|++.|+
T Consensus 293 ~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie 372 (412)
T PRK05342 293 FGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILE 372 (412)
T ss_pred HhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 26899999997 799999999999999984 33333322222334568999999999998 5889999999999999
Q ss_pred HHHHHHHHHHHH
Q 003349 542 ALARAAAVKVAE 553 (828)
Q Consensus 542 ~l~~~a~~~~l~ 553 (828)
+.+....+++..
T Consensus 373 ~~l~~~~~~~p~ 384 (412)
T PRK05342 373 EILLDVMFELPS 384 (412)
T ss_pred HHhHHHHHhccc
Confidence 999877766543
No 37
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.4e-22 Score=215.46 Aligned_cols=213 Identities=24% Similarity=0.293 Sum_probs=166.3
Q ss_pred cHHHHHHhhcccccchHHHHHHHHHHHHHhhh---C---CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc
Q 003349 303 DLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---K---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 376 (828)
Q Consensus 303 ~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~---~---~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~ 376 (828)
+......+-.+++.|.+++|+.+.+.+...+- . +..-+.++||+||||||||.|||++|.+.+.||+....+++
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEF 373 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEF 373 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccch
Confidence 34445556678999999999998877654321 1 11234579999999999999999999999999999888876
Q ss_pred CchhhhccCcccccccCcchHHHHHHhcCCCC-cEEEEecccccCCCCCCCh-------HHHHHHhcCcccccccccccC
Q 003349 377 KDEADIRGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRGDP-------ASALLEVLDPEQNKTFNDHYL 448 (828)
Q Consensus 377 ~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~-~vl~iDEid~l~~~~~~~~-------~~~Ll~~ld~~~~~~~~~~~~ 448 (828)
.. .|+|.-..+++..|..+.... +||||||||.+..++.... .|.||--||+ |..
T Consensus 374 dE---------m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDG-----F~q--- 436 (752)
T KOG0734|consen 374 DE---------MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDG-----FKQ--- 436 (752)
T ss_pred hh---------hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcC-----cCc---
Confidence 65 578888889999998877554 4999999999998875433 3556666653 333
Q ss_pred CeeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHH-HHHHHH
Q 003349 449 NVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVI 524 (828)
Q Consensus 449 ~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~-~l~~l~ 524 (828)
..+++||++||.++.||+||.+ ||| .|.+|.|+-..|.+|++.|+.+ +.++++ ....|+
T Consensus 437 -----NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k------------i~~~~~VD~~iiA 499 (752)
T KOG0734|consen 437 -----NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK------------IPLDEDVDPKIIA 499 (752)
T ss_pred -----CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc------------CCcccCCCHhHhc
Confidence 2478999999999999999998 999 6999999999999999999743 222222 234467
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 525 QRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 525 ~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+...+.+| +.|.+++..||+++..+
T Consensus 500 RGT~GFsG-----AdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 500 RGTPGFSG-----ADLANLVNQAALKAAVD 524 (752)
T ss_pred cCCCCCch-----HHHHHHHHHHHHHHHhc
Confidence 78888888 88999999999987766
No 38
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.87 E-value=2.6e-21 Score=213.76 Aligned_cols=240 Identities=19% Similarity=0.256 Sum_probs=176.6
Q ss_pred cHHHHHHhhcccccchHHHHHHHHHHHHHhhhC--C---C-------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 303 DLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLK--P---D-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 303 ~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~--~---~-------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
....++..|++.++||+++++.+...+...... . . ....++||+||||||||++|+++|+.++.++..
T Consensus 67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~ 146 (413)
T TIGR00382 67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAI 146 (413)
T ss_pred CHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence 356788899999999999999998776432111 1 1 123589999999999999999999999999988
Q ss_pred EecCCcCchhhhccCcccccccCc-chHHHHHHhcC-----CCCcEEEEecccccCCCCCC----------ChHHHHHHh
Q 003349 371 ISLGGVKDEADIRGHRRTYIGSMP-GRLIDGLKRVG-----VCNPVMLLDEIDKTGSDVRG----------DPASALLEV 434 (828)
Q Consensus 371 i~~~~~~~~~~l~g~~~~~vg~~~-g~l~~~~~~~~-----~~~~vl~iDEid~l~~~~~~----------~~~~~Ll~~ 434 (828)
++++.+.. .+|+|... +.+...+..+. ..++|+||||||++++..++ +.++.||++
T Consensus 147 ~da~~L~~--------~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~i 218 (413)
T TIGR00382 147 ADATTLTE--------AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKI 218 (413)
T ss_pred echhhccc--------cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHH
Confidence 88766432 25788753 34444444332 13459999999999874321 458999999
Q ss_pred cCcccccccccccCCeeecCCCcEEEEecCCC---------------------------C--------------------
Q 003349 435 LDPEQNKTFNDHYLNVPFDLSKVIFVATANRA---------------------------Q-------------------- 467 (828)
Q Consensus 435 ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~---------------------------~-------------------- 467 (828)
|++.. .... ...++..++.++++|+|+|.. +
T Consensus 219 LeG~~-~~v~-~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl 296 (413)
T TIGR00382 219 IEGTV-ANVP-PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDL 296 (413)
T ss_pred hhccc-eecc-cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHH
Confidence 97421 1111 123566677778888887761 0
Q ss_pred ---CCCccccCceE-EEEcCCCCHHHHHHHHHHh---hcHHHHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHH
Q 003349 468 ---PIPPPLLDRME-VIELPGYTPEEKLRIAMRH---LIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERN 539 (828)
Q Consensus 468 ---~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~---l~~~~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~ 539 (828)
.+.|+|+.|++ ++.|.+++.+++.+|+... +.++..+.....+..+.++++++++|++ .|+...|+|.|++.
T Consensus 297 ~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~i 376 (413)
T TIGR00382 297 VKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSI 376 (413)
T ss_pred HHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHH
Confidence 26799999997 7899999999999999875 3444444454556679999999999998 58889999999999
Q ss_pred HHHHHHHHHHHHH
Q 003349 540 LAALARAAAVKVA 552 (828)
Q Consensus 540 i~~l~~~a~~~~l 552 (828)
|++.+..+.+.+.
T Consensus 377 ie~~l~~~m~e~p 389 (413)
T TIGR00382 377 VEGLLLDVMFDLP 389 (413)
T ss_pred HHHhhHHHHhhCC
Confidence 9999977666543
No 39
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.9e-21 Score=190.52 Aligned_cols=212 Identities=25% Similarity=0.391 Sum_probs=165.5
Q ss_pred HHhhcccccchHHHHHHHHHHHHHhhhCCC-------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh
Q 003349 308 KERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 380 (828)
Q Consensus 308 ~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~-------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~ 380 (828)
+....+.+.|++..++.|.+.+..+..+|. ..+.++|||||||||||.+|+++|......|++++.++...
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq-- 219 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-- 219 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH--
Confidence 334456788999999999999887655442 45668999999999999999999999999999988665432
Q ss_pred hhccCcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCC-----CCC--hHHHHHHhcCcccccccccccCCeee
Q 003349 381 DIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDV-----RGD--PASALLEVLDPEQNKTFNDHYLNVPF 452 (828)
Q Consensus 381 ~l~g~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~-----~~~--~~~~Ll~~ld~~~~~~~~~~~~~~~~ 452 (828)
+|+|+....+++.|-.+....| |+|+||||.+...+ .|| .+..++++|.. ..+|..
T Consensus 220 -------k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq--ldgfea------- 283 (404)
T KOG0728|consen 220 -------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ--LDGFEA------- 283 (404)
T ss_pred -------HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh--cccccc-------
Confidence 7899888788888877765544 99999999998765 223 26777777752 234433
Q ss_pred cCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 453 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 453 ~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
..|+-+|++||+.+-+||||++ |++ -|+||+|+.+.|.+|++.|-.+..+.+ | +. +..+++...+
T Consensus 284 -tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~r-g-----i~-----l~kiaekm~g 351 (404)
T KOG0728|consen 284 -TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTR-G-----IN-----LRKIAEKMPG 351 (404)
T ss_pred -ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhc-c-----cC-----HHHHHHhCCC
Confidence 4578999999999999999998 998 699999999999999999865433321 1 21 4567777777
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 530 EAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 530 ~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.+| +.+..+|.+|.+.+++.
T Consensus 352 asg-----aevk~vcteagm~alre 371 (404)
T KOG0728|consen 352 ASG-----AEVKGVCTEAGMYALRE 371 (404)
T ss_pred Ccc-----chhhhhhhhhhHHHHHH
Confidence 777 78899999999999987
No 40
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.86 E-value=6.8e-21 Score=211.47 Aligned_cols=212 Identities=25% Similarity=0.336 Sum_probs=154.4
Q ss_pred HHhhcccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh
Q 003349 308 KERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 380 (828)
Q Consensus 308 ~~~l~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~ 380 (828)
+..-..++.|++.+++.+.+.+..+...+ -.++.++||+||||||||++|+++|+.++.+++.+..+....
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~-- 217 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ-- 217 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH--
Confidence 34556789999999999999887654432 245678999999999999999999999999998887544322
Q ss_pred hhccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC-----C--hHHHHHHhcCcccccccccccCCeee
Q 003349 381 DIRGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-----D--PASALLEVLDPEQNKTFNDHYLNVPF 452 (828)
Q Consensus 381 ~l~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~-----~--~~~~Ll~~ld~~~~~~~~~~~~~~~~ 452 (828)
.|+|.....+.+.|..+... +.|+||||+|.+..++.+ + .+..+.+++... ..+.
T Consensus 218 -------k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l--d~~~-------- 280 (398)
T PTZ00454 218 -------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM--DGFD-------- 280 (398)
T ss_pred -------HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh--hccC--------
Confidence 57787777788888776544 449999999998765411 1 123334443311 0111
Q ss_pred cCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 453 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 453 ~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
...+++||+|||+++.+||++++ ||+ .|+|+.|+.++|..|++.++.+ .++. ..+ .+..++....+
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-----~~l~---~dv---d~~~la~~t~g 349 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-----MNLS---EEV---DLEDFVSRPEK 349 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-----CCCC---ccc---CHHHHHHHcCC
Confidence 12367899999999999999997 998 6999999999999999987532 2221 112 24556665556
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 530 EAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 530 ~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.+| +.|..+|++|++.++++
T Consensus 350 ~sg-----aDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 350 ISA-----ADIAAICQEAGMQAVRK 369 (398)
T ss_pred CCH-----HHHHHHHHHHHHHHHHc
Confidence 666 88999999999999987
No 41
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.85 E-value=7.2e-21 Score=215.53 Aligned_cols=204 Identities=23% Similarity=0.224 Sum_probs=152.6
Q ss_pred ccccchHHHHHHHHHHHHH----hhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccc
Q 003349 313 SDHYGLVRVKQRIIEYLAV----RKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRT 388 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~----~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~ 388 (828)
+++.|++.+|+.+.+.... ....+-..+.++||+||||||||++|+++|+.++.+++.++++...+ +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~---------~ 298 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG---------G 298 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc---------c
Confidence 3578999888887754321 12223345678999999999999999999999999999999876443 6
Q ss_pred ccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCC--CC--h----HHHHHHhcCcccccccccccCCeeecCCCcEE
Q 003349 389 YIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVR--GD--P----ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 459 (828)
Q Consensus 389 ~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~--~~--~----~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vii 459 (828)
|+|..+..+.+.|..+.. .++|+||||||++..... ++ . .+.|+..|+.. ..+++|
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~---------------~~~V~v 363 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK---------------KSPVFV 363 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC---------------CCceEE
Confidence 889888888888887654 345999999999876431 22 1 34455555421 246799
Q ss_pred EEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 460 VATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 460 I~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
|+|||+++.+|+++++ ||+ +|+|+.|+.++|.+|++.++.+. +. ...++..+..+++...+.+|
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~-----~~----~~~~~~dl~~La~~T~GfSG---- 430 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF-----RP----KSWKKYDIKKLSKLSNKFSG---- 430 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc-----CC----CcccccCHHHHHhhcCCCCH----
Confidence 9999999999999997 998 79999999999999999997431 10 11223446777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003349 537 ERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 537 ~~~i~~l~~~a~~~~l~~ 554 (828)
+.|+++|.+|+..+...
T Consensus 431 -AdI~~lv~eA~~~A~~~ 447 (489)
T CHL00195 431 -AEIEQSIIEAMYIAFYE 447 (489)
T ss_pred -HHHHHHHHHHHHHHHHc
Confidence 88899999988877654
No 42
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.6e-22 Score=199.66 Aligned_cols=214 Identities=19% Similarity=0.247 Sum_probs=167.5
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCC------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~ 386 (828)
.++.|++.+|+.+.+.+..+...|. .+..++||+||||||||.||+++|...+..|+.++-+++.+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS-------- 204 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-------- 204 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH--------
Confidence 5688999999999998876544332 34568999999999999999999999999999988776554
Q ss_pred ccccccCcchHHHHHHhcCCCC-cEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 387 RTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 387 ~~~vg~~~g~l~~~~~~~~~~~-~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
+|.|+++..+.+.|..+.... +||||||||.++..+.++...+-.++ .+.|.-.+.|+..|..+++|+++||-
T Consensus 205 -KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRI-----KTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 205 -KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRI-----KTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred -HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHH-----HHHHHHhhhccccCCCceEEEecCCC
Confidence 799999988888887776544 49999999999987744332221111 01122222244456678999999999
Q ss_pred CCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 466 AQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 466 ~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
|+.||.|+++||+ .|++|.|....|..+++.|+- .....+++....+|.....+++| .+|.-++
T Consensus 279 Pw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG----------~tp~~LT~~d~~eL~~kTeGySG-----sDisivV 343 (439)
T KOG0739|consen 279 PWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLG----------DTPHVLTEQDFKELARKTEGYSG-----SDISIVV 343 (439)
T ss_pred chhHHHHHHHHhhcceeccCCcHHHhhhhheeccC----------CCccccchhhHHHHHhhcCCCCc-----CceEEEe
Confidence 9999999999998 799999999999999998852 33456788889999998888888 7888888
Q ss_pred HHHHHHHHHHh
Q 003349 545 RAAAVKVAEQE 555 (828)
Q Consensus 545 ~~a~~~~l~~~ 555 (828)
|.|.+.-+|+.
T Consensus 344 rDalmePvRkv 354 (439)
T KOG0739|consen 344 RDALMEPVRKV 354 (439)
T ss_pred hhhhhhhHHHh
Confidence 88888888874
No 43
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.4e-20 Score=209.02 Aligned_cols=206 Identities=26% Similarity=0.352 Sum_probs=165.0
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCC-------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhcc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~-------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g 384 (828)
..++.|+.++++.+.+.+.++..++. +-+.++|||||||||||.||.++|..++..|+.+...+..+
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~------ 739 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS------ 739 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH------
Confidence 35788999999999999998765543 34558999999999999999999999988888887555443
Q ss_pred CcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCCCCCh-------HHHHHHhcCcccccccccccCCeeecCCC
Q 003349 385 HRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGDP-------ASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~~~~~-------~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
+|+|.+++.++..|.++....| |+||||+|.+.|++.+|. .|.||.-||+.. .+.+
T Consensus 740 ---KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E-------------gl~G 803 (952)
T KOG0735|consen 740 ---KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE-------------GLDG 803 (952)
T ss_pred ---HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc-------------ccce
Confidence 8999999999999999876544 999999999999986543 789999998542 1457
Q ss_pred cEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 457 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
+.|+++|.+|+.+||||+| |+| .++.+.|+..+|.+|++..-. ....-++..++.++....++.|
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~-----------s~~~~~~vdl~~~a~~T~g~tg- 871 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSN-----------SLLKDTDVDLECLAQKTDGFTG- 871 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhh-----------ccCCccccchHHHhhhcCCCch-
Confidence 8999999999999999998 998 699999999999999987531 1112234557777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 003349 534 RNLERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 534 R~l~~~i~~l~~~a~~~~l~~~ 555 (828)
++++.++..|-+.++++.
T Consensus 872 ----ADlq~ll~~A~l~avh~~ 889 (952)
T KOG0735|consen 872 ----ADLQSLLYNAQLAAVHEI 889 (952)
T ss_pred ----hhHHHHHHHHHHHHHHHH
Confidence 677777777766666553
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=3.9e-20 Score=184.52 Aligned_cols=190 Identities=23% Similarity=0.328 Sum_probs=126.7
Q ss_pred HhhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccc
Q 003349 309 ERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRT 388 (828)
Q Consensus 309 ~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~ 388 (828)
...-++++||++++..+.-++...... ...-++++||||||+||||||+.||+.++.++...+......
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r-~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k---------- 88 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR-GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK---------- 88 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT-TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S----------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc-CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh----------
Confidence 334568999999999987776654332 234568999999999999999999999999988766433221
Q ss_pred ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCccccccccccc---CCeeecCCCcEEEEecCC
Q 003349 389 YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY---LNVPFDLSKVIFVATANR 465 (828)
Q Consensus 389 ~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~---~~~~~~~~~viiI~TtN~ 465 (828)
.+.+...+.... .+.|+|||||+++++.. +..|+..|+........... -...+++.++.+|++|++
T Consensus 89 -----~~dl~~il~~l~-~~~ILFIDEIHRlnk~~----qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 89 -----AGDLAAILTNLK-EGDILFIDEIHRLNKAQ----QEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp -----CHHHHHHHHT---TT-EEEECTCCC--HHH----HHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred -----HHHHHHHHHhcC-CCcEEEEechhhccHHH----HHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 234444444432 35699999999999887 89999999875433222221 235677889999999999
Q ss_pred CCCCCccccCceEE-EEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 466 AQPIPPPLLDRMEV-IELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 466 ~~~l~~aLl~R~~~-i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
...++++|++||-+ ..+..|+.+++.+|+++.. ...++.+++++..+|+.+.-+
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a----------~~l~i~i~~~~~~~Ia~rsrG 213 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA----------RILNIEIDEDAAEEIARRSRG 213 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCC----------HCTT-EE-HHHHHHHHHCTTT
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHH----------HHhCCCcCHHHHHHHHHhcCC
Confidence 99999999999985 5899999999999998763 234688999999999985544
No 45
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.4e-21 Score=199.91 Aligned_cols=207 Identities=21% Similarity=0.319 Sum_probs=157.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCC--------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhcc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPD--------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~--------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g 384 (828)
.++.|++.+++.+.+.+..+...+. .+..++||+||||||||.+|+++|+..+..|+.+.++.+++
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~------ 165 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS------ 165 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch------
Confidence 4688999999999998876554332 35568999999999999999999999999999999999887
Q ss_pred CcccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCCCh-------HHHHHHhcCcccccccccccCCeeecCCC
Q 003349 385 HRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGDP-------ASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~-------~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
+|.|+....+...|.-+.. .+.++||||+|.+...++... -+.|...+|+.. . -+...
T Consensus 166 ---KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~-----s------~~~~r 231 (386)
T KOG0737|consen 166 ---KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLS-----S------KDSER 231 (386)
T ss_pred ---hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhcccc-----C------CCCce
Confidence 5677777666666665543 345999999999886653222 233444555321 1 12335
Q ss_pred cEEEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 457 VIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
++|+++||+|.++|+|++|||. .++++-|+.++|.+|++-.+.+..+. -.++ +..++..+.+++|
T Consensus 232 VlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e--------~~vD---~~~iA~~t~GySG--- 297 (386)
T KOG0737|consen 232 VLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE--------DDVD---LDEIAQMTEGYSG--- 297 (386)
T ss_pred EEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC--------cccC---HHHHHHhcCCCcH---
Confidence 8999999999999999999996 79999999999999999987532211 2232 4455665666667
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 003349 536 LERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 536 l~~~i~~l~~~a~~~~l~~~ 555 (828)
++|..+|+.|++..++..
T Consensus 298 --SDLkelC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 298 --SDLKELCRLAALRPIREL 315 (386)
T ss_pred --HHHHHHHHHHhHhHHHHH
Confidence 999999999999988874
No 46
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.7e-20 Score=213.75 Aligned_cols=208 Identities=26% Similarity=0.347 Sum_probs=165.5
Q ss_pred hhcccccchHHHHHHHHHHHHHhhh------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhc
Q 003349 310 RLDSDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 383 (828)
Q Consensus 310 ~l~~~i~G~~~~~~~l~~~l~~~~~------~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~ 383 (828)
+...++.|.+++|+.|.|++...+. .+...+.++||+||||||||.||+|+|.+.+.||+.++.++..+
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE----- 382 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE----- 382 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH-----
Confidence 5567899999999999998865321 22345678999999999999999999999999999999888765
Q ss_pred cCcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCCCC-----------ChHHHHHHhcCcccccccccccCCee
Q 003349 384 GHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRG-----------DPASALLEVLDPEQNKTFNDHYLNVP 451 (828)
Q Consensus 384 g~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~~~-----------~~~~~Ll~~ld~~~~~~~~~~~~~~~ 451 (828)
.++|....++...|..+....| |+|+||||.+...+.| ...|.|+--||. |.
T Consensus 383 ----~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg-----f~------- 446 (774)
T KOG0731|consen 383 ----MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG-----FE------- 446 (774)
T ss_pred ----HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC-----Cc-------
Confidence 4666667788999988775444 9999999999876621 125666666663 21
Q ss_pred ecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhh
Q 003349 452 FDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 528 (828)
Q Consensus 452 ~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~ 528 (828)
. ..+++|+++||+++-+|+||++ ||| .|.++.|+...|.+|++.|+.+. .+..++..+..++....
T Consensus 447 ~-~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~----------~~~~e~~dl~~~a~~t~ 515 (774)
T KOG0731|consen 447 T-SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK----------KLDDEDVDLSKLASLTP 515 (774)
T ss_pred C-CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc----------CCCcchhhHHHHHhcCC
Confidence 1 2578999999999999999998 998 79999999999999999997421 12234444555777778
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 529 REAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 529 ~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+..| ++|.++|.+|++.+.++
T Consensus 516 gf~g-----adl~n~~neaa~~a~r~ 536 (774)
T KOG0731|consen 516 GFSG-----ADLANLCNEAALLAARK 536 (774)
T ss_pred CCcH-----HHHHhhhhHHHHHHHHh
Confidence 8888 89999999999999987
No 47
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.1e-20 Score=214.29 Aligned_cols=207 Identities=25% Similarity=0.355 Sum_probs=165.2
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCC-------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhcc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~-------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g 384 (828)
..++.|++.+++.+.+.+..+..++. .++.++||+||||||||++|+++|..++.+|+.+..+.+.+
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s------ 314 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS------ 314 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc------
Confidence 34677899999999988877655443 45558999999999999999999999999999999876655
Q ss_pred CcccccccCcchHHHHHHhcC-CCCcEEEEecccccCCCCCC-------ChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 385 HRRTYIGSMPGRLIDGLKRVG-VCNPVMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~-~~~~vl~iDEid~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
+|+|+++..+.+.|..+. ..++|+||||+|++.+.+.. ...+.|+..|+... ..++
T Consensus 315 ---k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-------------~~~~ 378 (494)
T COG0464 315 ---KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-------------KAEG 378 (494)
T ss_pred ---cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC-------------ccCc
Confidence 799999999999999988 44569999999999987743 24677777776432 2456
Q ss_pred cEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 457 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
+++|+|||+++.+|+++++ ||+ .|+|+.|+.++|.+|++.++... ......+-.+..+++...+.+|
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~---------~~~~~~~~~~~~l~~~t~~~sg- 448 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK---------KPPLAEDVDLEELAEITEGYSG- 448 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc---------CCcchhhhhHHHHHHHhcCCCH-
Confidence 8999999999999999999 998 79999999999999999997410 0011233445555554445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003349 534 RNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 534 R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+.|..+|++|++..++.
T Consensus 449 ----adi~~i~~ea~~~~~~~ 465 (494)
T COG0464 449 ----ADIAALVREAALEALRE 465 (494)
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 89999999999999988
No 48
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.83 E-value=7e-20 Score=221.19 Aligned_cols=206 Identities=25% Similarity=0.354 Sum_probs=162.1
Q ss_pred hhcccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhh
Q 003349 310 RLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI 382 (828)
Q Consensus 310 ~l~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l 382 (828)
.-..++.|++.+++.+.+.+.++..++ ...+.++||+||||||||++|+++|+.++.+++.+..+...+
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~---- 525 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS---- 525 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh----
Confidence 345678999999999999887654332 234567999999999999999999999999999988766443
Q ss_pred ccCcccccccCcchHHHHHHhcCCCC-cEEEEecccccCCCCCCC--------hHHHHHHhcCcccccccccccCCeeec
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRGD--------PASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~~~~-~vl~iDEid~l~~~~~~~--------~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
.|+|+.+..+...|..+.... .|+||||+|.+.+.+.++ ..+.|+..||+.. +
T Consensus 526 -----~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-------------~ 587 (733)
T TIGR01243 526 -----KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-------------E 587 (733)
T ss_pred -----cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc-------------C
Confidence 689999989999998876544 599999999998765321 2466777776421 1
Q ss_pred CCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccC-HHHHHHHHHHhhh
Q 003349 454 LSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIP-EAMVKLVIQRYTR 529 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~-~~~l~~l~~~~~~ 529 (828)
..+++||+|||+++.+|+++++ ||+ .|+|+.|+.++|.+|++.++.+ ..++ +..+..+++.+.+
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~------------~~~~~~~~l~~la~~t~g 655 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS------------MPLAEDVDLEELAEMTEG 655 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC------------CCCCccCCHHHHHHHcCC
Confidence 3578999999999999999997 998 7999999999999999877521 1222 2235667776667
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 530 EAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 530 ~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.+| +.|..+|+.|++.++++
T Consensus 656 ~sg-----adi~~~~~~A~~~a~~~ 675 (733)
T TIGR01243 656 YTG-----ADIEAVCREAAMAALRE 675 (733)
T ss_pred CCH-----HHHHHHHHHHHHHHHHH
Confidence 777 88999999999998887
No 49
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=1.5e-19 Score=193.07 Aligned_cols=218 Identities=25% Similarity=0.361 Sum_probs=156.9
Q ss_pred HhcHHHHHHhhcccccchHHHHHHHHHHHHHhh---------hCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC------
Q 003349 301 DLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRK---------LKPDARGPVLCFVGPPGVGKTSLASSIASALG------ 365 (828)
Q Consensus 301 ~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~---------~~~~~~~~~lLL~GppGtGKT~la~~la~~l~------ 365 (828)
..++..+.+.|+++++|++++|++|.+.+.+.. ..+..++.+++|+||||||||++|+++|+.+.
T Consensus 11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 567889999999999999999999988765421 11123466899999999999999999999862
Q ss_pred -CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCCCC-----CCChHHHHHHhcCccc
Q 003349 366 -RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDV-----RGDPASALLEVLDPEQ 439 (828)
Q Consensus 366 -~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~-----~~~~~~~Ll~~ld~~~ 439 (828)
.+++.++.+. +.+ .|+|.........+..+. ++||||||++.+.... ..+.++.|++.|+..
T Consensus 91 ~~~~~~v~~~~------l~~---~~~g~~~~~~~~~l~~a~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~- 158 (287)
T CHL00181 91 KGHLLTVTRDD------LVG---QYIGHTAPKTKEVLKKAM--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ- 158 (287)
T ss_pred CCceEEecHHH------HHH---HHhccchHHHHHHHHHcc--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC-
Confidence 1344444322 221 467776666666777654 5799999999985432 123367888888742
Q ss_pred ccccccccCCeeecCCCcEEEEecCCCC-----CCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCccc
Q 003349 440 NKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFL 513 (828)
Q Consensus 440 ~~~~~~~~~~~~~~~~~viiI~TtN~~~-----~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~ 513 (828)
..+++||++++... .++|+|++||. +|.|++|+.+++.+|+..++... ..
T Consensus 159 --------------~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~----------~~ 214 (287)
T CHL00181 159 --------------RDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ----------QY 214 (287)
T ss_pred --------------CCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh----------cC
Confidence 13567778776432 45799999997 79999999999999999986421 24
Q ss_pred ccCHHHHHHHHHHh------hhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 514 QIPEAMVKLVIQRY------TREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 514 ~i~~~~l~~l~~~~------~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.+++++...+.+.+ .+..++|.+++.+++.+...+.|++..
T Consensus 215 ~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 215 QLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred CCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 56666665555422 223449999999999998888887765
No 50
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1e-20 Score=190.45 Aligned_cols=215 Identities=23% Similarity=0.346 Sum_probs=166.7
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhhCCC-------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc
Q 003349 304 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 376 (828)
Q Consensus 304 l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~-------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~ 376 (828)
+...+.....++.|++..++.|.+.+..+.-+|. .++.+++|||+||||||.||+++|+.....|.++..+..
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 4445556678899999999999999987665442 456689999999999999999999999999988876553
Q ss_pred CchhhhccCcccccccCcchHHHHHHhcCCCC-cEEEEecccccCCCCCC-------ChHHHHHHhcCcccccccccccC
Q 003349 377 KDEADIRGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYL 448 (828)
Q Consensus 377 ~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~-~vl~iDEid~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~ 448 (828)
.. +|.|.-+..+++.|+-+.... +|+||||||.+..++.. ..|..+|++|. |..+|.+
T Consensus 256 iQ---------kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLN--QldGFds--- 321 (440)
T KOG0726|consen 256 IQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN--QLDGFDS--- 321 (440)
T ss_pred HH---------HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHH--hccCccc---
Confidence 32 789999988999999887554 49999999999876621 23677788776 3344433
Q ss_pred CeeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHH-HHHHHH
Q 003349 449 NVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVI 524 (828)
Q Consensus 449 ~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~-~l~~l~ 524 (828)
...+-+|++||+.+.|||+|++ |++ -|+|+.|+...+.+|+..|..+. .++++ .++.++
T Consensus 322 -----rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M------------tl~~dVnle~li 384 (440)
T KOG0726|consen 322 -----RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM------------TLAEDVNLEELI 384 (440)
T ss_pred -----cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeeccc------------chhccccHHHHh
Confidence 2467899999999999999998 998 69999999999999998885432 22222 234444
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 525 QRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 525 ~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
..-...+| +.|..+|.+|.+-+++.
T Consensus 385 ~~kddlSG-----AdIkAictEaGllAlRe 409 (440)
T KOG0726|consen 385 MTKDDLSG-----ADIKAICTEAGLLALRE 409 (440)
T ss_pred hccccccc-----ccHHHHHHHHhHHHHHH
Confidence 43344566 88999999999999987
No 51
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.81 E-value=4.1e-19 Score=188.43 Aligned_cols=169 Identities=15% Similarity=0.224 Sum_probs=129.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCC------CCcEE
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGV------CNPVM 411 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~------~~~vl 411 (828)
..+.+++|+||||||||.+|+++|+.++.+++.++.+.+.+ +|+|+.+..+++.|+.+.. .++||
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s---------k~vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES---------ENAGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc---------CcCCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 45668999999999999999999999999999999887665 7999999999999987642 35699
Q ss_pred EEecccccCCCCCCC--h------HHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccC--ceEEEE
Q 003349 412 LLDEIDKTGSDVRGD--P------ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RMEVIE 481 (828)
Q Consensus 412 ~iDEid~l~~~~~~~--~------~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~~i~ 481 (828)
||||||.+.+.+.++ . ...|+.+||...+-.....+ ...-....++||+|||+++.|+|+|++ ||+.+
T Consensus 217 FIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w-~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~- 294 (413)
T PLN00020 217 FINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDW-REKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF- 294 (413)
T ss_pred EEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccc-cccccCCCceEEEeCCCcccCCHhHcCCCCCCce-
Confidence 999999999876321 1 25778888743211100000 000124578999999999999999999 99853
Q ss_pred cCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 482 LPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 482 ~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
|..|+.++|.+|++.++.+ ..++...+..|++.|.+
T Consensus 295 i~lPd~e~R~eIL~~~~r~------------~~l~~~dv~~Lv~~f~g 330 (413)
T PLN00020 295 YWAPTREDRIGVVHGIFRD------------DGVSREDVVKLVDTFPG 330 (413)
T ss_pred eCCCCHHHHHHHHHHHhcc------------CCCCHHHHHHHHHcCCC
Confidence 3479999999999988631 24567788889988765
No 52
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.5e-20 Score=185.45 Aligned_cols=217 Identities=19% Similarity=0.301 Sum_probs=165.1
Q ss_pred hcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCCC-------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecC
Q 003349 302 LDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 374 (828)
Q Consensus 302 ~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~-------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~ 374 (828)
...++-......++.|..+.++.+.+.+..+.+++. .++.++|+|||||||||.+|+++|+..+.-|+++-.|
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 344555566778999999999999999988777654 4667899999999999999999999999999988765
Q ss_pred CcCchhhhccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCC-----C--ChHHHHHHhcCcccccccccc
Q 003349 375 GVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVR-----G--DPASALLEVLDPEQNKTFNDH 446 (828)
Q Consensus 375 ~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~-----~--~~~~~Ll~~ld~~~~~~~~~~ 446 (828)
++.. +|+|+....+++.|..+... .+++||||||.+...+- + ..|..+|+++. |..+|..
T Consensus 246 elvq---------kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~--qldgfdp- 313 (435)
T KOG0729|consen 246 ELVQ---------KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIN--QLDGFDP- 313 (435)
T ss_pred HHHH---------HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHH--hccCCCC-
Confidence 5432 79999888888888877643 45999999999987552 1 23677777765 2233332
Q ss_pred cCCeeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHH-
Q 003349 447 YLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKL- 522 (828)
Q Consensus 447 ~~~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~- 522 (828)
..|+-++++||+++.|+|+|++ |++ -++|..|+.+.|.+|++.|... ..+..+..-.
T Consensus 314 -------rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks------------msverdir~el 374 (435)
T KOG0729|consen 314 -------RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS------------MSVERDIRFEL 374 (435)
T ss_pred -------CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc------------cccccchhHHH
Confidence 2478899999999999999998 998 6999999999999999888431 2233333223
Q ss_pred HHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 523 VIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 523 l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
|+.-|....| +.|..+|.+|.+.+++.
T Consensus 375 larlcpnstg-----aeirsvcteagmfaira 401 (435)
T KOG0729|consen 375 LARLCPNSTG-----AEIRSVCTEAGMFAIRA 401 (435)
T ss_pred HHhhCCCCcc-----hHHHHHHHHhhHHHHHH
Confidence 3334444556 78899999998887765
No 53
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=202.91 Aligned_cols=209 Identities=24% Similarity=0.362 Sum_probs=152.5
Q ss_pred hhcccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhh
Q 003349 310 RLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI 382 (828)
Q Consensus 310 ~l~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l 382 (828)
....++.|+++.++.+.+.+..+..++ -.++.++||+||||||||++|+++|+.++.+++.+..+.+..
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~---- 255 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ---- 255 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh----
Confidence 344678999999999999887654432 245668999999999999999999999999998887655432
Q ss_pred ccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCC-----CC--hHHHHHHhcCcccccccccccCCeeecC
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVR-----GD--PASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~-----~~--~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.|+|.....+...|..+... +.|+||||||.+..++. ++ .+..++++|... ..+. ..
T Consensus 256 -----k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L--dg~~--------~~ 320 (438)
T PTZ00361 256 -----KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL--DGFD--------SR 320 (438)
T ss_pred -----hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH--hhhc--------cc
Confidence 57777777777777766543 34999999999876542 11 134444444321 1111 12
Q ss_pred CCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCH-HHHHHHHHHhhhh
Q 003349 455 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPE-AMVKLVIQRYTRE 530 (828)
Q Consensus 455 ~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~-~~l~~l~~~~~~~ 530 (828)
.++.||+|||+++.+++++++ ||+ .|+|+.|+.++|.+|++.++.+ . .+++ ..+..++....+.
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k-----~-------~l~~dvdl~~la~~t~g~ 388 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK-----M-------TLAEDVDLEEFIMAKDEL 388 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc-----C-------CCCcCcCHHHHHHhcCCC
Confidence 367899999999999999986 998 7999999999999999987531 1 1221 1245556555555
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHH
Q 003349 531 AGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 531 ~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+| +.|..+|+.|++.++++
T Consensus 389 sg-----AdI~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 389 SG-----ADIKAICTEAGLLALRE 407 (438)
T ss_pred CH-----HHHHHHHHHHHHHHHHh
Confidence 66 77889999999999887
No 54
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.6e-20 Score=183.77 Aligned_cols=211 Identities=23% Similarity=0.358 Sum_probs=157.7
Q ss_pred HHhhcccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh
Q 003349 308 KERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 380 (828)
Q Consensus 308 ~~~l~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~ 380 (828)
+..-.+++.|+++.++.+.+.+..+..++ -.++.++|+|||||||||.+||+.|...+..|..+......
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV--- 242 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV--- 242 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH---
Confidence 33445789999999999999887654322 24667899999999999999999999988877766433322
Q ss_pred hhccCcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCC-----CCC--hHHHHHHhcCcccccccccccCCeee
Q 003349 381 DIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDV-----RGD--PASALLEVLDPEQNKTFNDHYLNVPF 452 (828)
Q Consensus 381 ~l~g~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~-----~~~--~~~~Ll~~ld~~~~~~~~~~~~~~~~ 452 (828)
..|+|.....++.+|..+....| ||||||+|.+..++ .|| .+..++++|. |..+|...
T Consensus 243 ------QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLN--QLDGFss~------ 308 (424)
T KOG0652|consen 243 ------QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN--QLDGFSSD------ 308 (424)
T ss_pred ------hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHH--hhcCCCCc------
Confidence 25788777788889888775544 99999999998765 222 3667777775 23444432
Q ss_pred cCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHH-HHHHHHHhh
Q 003349 453 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAM-VKLVIQRYT 528 (828)
Q Consensus 453 ~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~-l~~l~~~~~ 528 (828)
..+-+|++||+.+-++|+|++ |++ -|+||-|+.+.|.+|++.|-++ ..+++++ .+.++....
T Consensus 309 --~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRK------------Mnv~~DvNfeELaRsTd 374 (424)
T KOG0652|consen 309 --DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRK------------MNVSDDVNFEELARSTD 374 (424)
T ss_pred --cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhh------------cCCCCCCCHHHHhhccc
Confidence 357899999999999999997 898 6999999999999999988532 1222222 345566555
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 529 REAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 529 ~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.+.| +....+|-+|.+-++++
T Consensus 375 dFNG-----AQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 375 DFNG-----AQCKAVCVEAGMIALRR 395 (424)
T ss_pred ccCc-----hhheeeehhhhHHHHhc
Confidence 5666 66788899999999988
No 55
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=8.9e-19 Score=187.37 Aligned_cols=218 Identities=22% Similarity=0.304 Sum_probs=158.1
Q ss_pred HhcHHHHHHhhcccccchHHHHHHHHHHHHHhhh---------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC-----
Q 003349 301 DLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---------KPDARGPVLCFVGPPGVGKTSLASSIASALGR----- 366 (828)
Q Consensus 301 ~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~---------~~~~~~~~lLL~GppGtGKT~la~~la~~l~~----- 366 (828)
...+++..+.|+.+++|++++|+.+.+.+.+... ....++.+++|+||||||||++|+++|+.+..
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~ 89 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVR 89 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc
Confidence 4567778888888899999999999887654211 11224558999999999999999999988732
Q ss_pred --CeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCC-----CChHHHHHHhcCccc
Q 003349 367 --KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVR-----GDPASALLEVLDPEQ 439 (828)
Q Consensus 367 --~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~-----~~~~~~Ll~~ld~~~ 439 (828)
+++.++++. +.+ .|+|.....+.+.+..+. +++|||||++.+.+... ...++.|++.|+..
T Consensus 90 ~~~~v~v~~~~------l~~---~~~g~~~~~~~~~~~~a~--~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~- 157 (284)
T TIGR02880 90 KGHLVSVTRDD------LVG---QYIGHTAPKTKEILKRAM--GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ- 157 (284)
T ss_pred cceEEEecHHH------HhH---hhcccchHHHHHHHHHcc--CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC-
Confidence 455555432 222 466766666667777664 57999999999854321 12367888888742
Q ss_pred ccccccccCCeeecCCCcEEEEecCCC--C---CCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCccc
Q 003349 440 NKTFNDHYLNVPFDLSKVIFVATANRA--Q---PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFL 513 (828)
Q Consensus 440 ~~~~~~~~~~~~~~~~~viiI~TtN~~--~---~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~ 513 (828)
..++++|++++.. + .++|+|++||. .|+||+|+.+++..|++.++.+ ...
T Consensus 158 --------------~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~----------~~~ 213 (284)
T TIGR02880 158 --------------RDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE----------QQY 213 (284)
T ss_pred --------------CCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH----------hcc
Confidence 1356777877653 2 46899999997 7999999999999999998643 124
Q ss_pred ccCHHHHHHHHHHh------hhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 514 QIPEAMVKLVIQRY------TREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 514 ~i~~~~l~~l~~~~------~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.++++++..+.+.. .+..++|.+++.++..+...+.|+...
T Consensus 214 ~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 214 RFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred ccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 67788877766531 456679999999999998888877655
No 56
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.80 E-value=4.7e-19 Score=204.81 Aligned_cols=204 Identities=26% Similarity=0.351 Sum_probs=150.1
Q ss_pred ccccchHHHHHHHHHHHHHhhh------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~------~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~ 386 (828)
++++|++++++.+.+.+..... .+...+.++||+||||||||++|+++|+.++.+++.++++...+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-------- 126 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE-------- 126 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH--------
Confidence 4688999999998877653211 12244567999999999999999999999999998887665432
Q ss_pred ccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCC----------ChHHHHHHhcCcccccccccccCCeeecCC
Q 003349 387 RTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRG----------DPASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 387 ~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~----------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
.+.|.....+...|..+.. .++||||||||.+.+++.. ...+.|+..||... +..
T Consensus 127 -~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~-------------~~~ 192 (495)
T TIGR01241 127 -MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-------------TNT 192 (495)
T ss_pred -HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc-------------CCC
Confidence 4566666677888877653 3459999999999865421 12345555555321 123
Q ss_pred CcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhc
Q 003349 456 KVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 532 (828)
Q Consensus 456 ~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g 532 (828)
+++||+|||+++.+++++++ ||+ .|+|+.|+.++|.+|++.++.. .. +. ++..+..++....+.+|
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~-----~~-----~~-~~~~l~~la~~t~G~sg 261 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN-----KK-----LA-PDVDLKAVARRTPGFSG 261 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc-----CC-----CC-cchhHHHHHHhCCCCCH
Confidence 58999999999999999997 998 7999999999999999988631 11 11 23345677776666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 003349 533 VRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 533 ~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+.|.++|++|+..+.++
T Consensus 262 -----adl~~l~~eA~~~a~~~ 278 (495)
T TIGR01241 262 -----ADLANLLNEAALLAARK 278 (495)
T ss_pred -----HHHHHHHHHHHHHHHHc
Confidence 78889999888877665
No 57
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4e-18 Score=178.20 Aligned_cols=202 Identities=21% Similarity=0.364 Sum_probs=170.3
Q ss_pred eecccchhhccCCCccCchhhhhh-cCCCceeEEEEEeecC-ceEEEEEEEEEcCcceEEEeeCC-ChHHHHHHHHHHHH
Q 003349 609 VVDEAMLEKVLGPPRFDDREAAER-VAAPGISVGLVWTNFG-GEVQFVEATAMRGKGELHLTGQL-GDVIKESAQIALTW 685 (828)
Q Consensus 609 ~i~~~~L~~~l~~~~~~~~~~~~~-~~~~G~v~g~~~~~~~-g~~~~ie~~~~~g~~~~~~~G~~-~~~~~es~~~a~~~ 685 (828)
...++--+.+...|+....+.++. -+.||.++.++-+..| ..++..|++...|+|+...+|+. +++.|||++.++.|
T Consensus 475 idne~l~e~fvsvpe~gg~~lipag~~kpg~~~~v~~~~~g~~glyrfe~q~~ag~gk~~~sg~gs~t~~keair~~f~y 554 (683)
T COG4930 475 IDNETLEEFFVSVPEQGGSELIPAGMPKPGVVHLVTQAESGMTGLYRFETQMTAGNGKHSVSGLGSSTSAKEAIRVGFDY 554 (683)
T ss_pred eccccHHHHheeCcccCCceecCCCCCCCceEEEEeecccCceeeEEEEEEEeecCCccccccCCCCccHHHHHHHHHHH
Confidence 344433345677777777666655 3568999998888887 57999999999999999999985 56799999999999
Q ss_pred HHHhhhhhhhhhhccCCCCCcccEEEEccCCCCCCCCch--hHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCC
Q 003349 686 VRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPS--AGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGG 763 (828)
Q Consensus 686 ~~~~~~~l~~~~~~~~~~~~~~dv~i~~~~~~~~~~g~s--a~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~g 763 (828)
.+.+++.+.+... +..++.|+|+-. +.-.||| ..||..+|+||.+..+|+...++++|.++|+|.|.||..
T Consensus 555 fk~n~~~vs~t~~-----~~e~~y~lhv~~--l~~~g~s~~~sl~a~ialcs~~l~k~~qeq~~vlgsmtlgg~i~~~~~ 627 (683)
T COG4930 555 FKGNLSRVSATAK-----FSEHEYHLHVVE--LHNTGPSTATSLAALIALCSVLLAKPVQEQMVVLGSMTLGGVINPVQD 627 (683)
T ss_pred hhcchhhhhceee-----eccceeeEEeee--eccCCcchhhhHHHHHHHHHHHhhccHHhhhhhheeeecccccchHHH
Confidence 9999888775432 788999999833 2345665 456777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEeecccChhhhccChhhhhCCcEEEEcCCHHHHHHHHHc
Q 003349 764 VKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 817 (828)
Q Consensus 764 i~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~ 817 (828)
+..-+..|.++|.|+|++|.+..-++..+|+++..+.+|-++++.-||+-..++
T Consensus 628 la~~lq~~~dsgakkv~lp~ssa~~i~tvp~~lftkfqvsfy~~pvdavyka~~ 681 (683)
T COG4930 628 LAASLQLAFDSGAKKVLLPMSSAVDIPTVPAELFTKFQVSFYSEPVDAVYKALG 681 (683)
T ss_pred HHHHHHHHHhcCCceEEEeccccCCcCCCCHHHhhhheeeeecCcHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999877653
No 58
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-18 Score=177.44 Aligned_cols=237 Identities=20% Similarity=0.287 Sum_probs=178.2
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhh--hCC--C-----CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecC
Q 003349 304 LKAAKERLDSDHYGLVRVKQRIIEYLAVRK--LKP--D-----ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 374 (828)
Q Consensus 304 l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~--~~~--~-----~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~ 374 (828)
..+++..|++.++||+.+|+.+.-.+.... +.. . -...++||.||+|+|||.||+.+|+.++.||..-+.+
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADAT 131 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADAT 131 (408)
T ss_pred hHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecccc
Confidence 567888999999999999998865443321 111 1 2346899999999999999999999999999988887
Q ss_pred CcCchhhhccCcccccccCcchHHHHHH-hcC-----CCCcEEEEecccccCCCCCC----------ChHHHHHHhcCcc
Q 003349 375 GVKDEADIRGHRRTYIGSMPGRLIDGLK-RVG-----VCNPVMLLDEIDKTGSDVRG----------DPASALLEVLDPE 438 (828)
Q Consensus 375 ~~~~~~~l~g~~~~~vg~~~g~l~~~~~-~~~-----~~~~vl~iDEid~l~~~~~~----------~~~~~Ll~~ld~~ 438 (828)
..+.. +|+|+.-.++...+- .+. ...+|++|||||++..+..+ ..|.+||.++++.
T Consensus 132 tLTEA--------GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 132 TLTEA--------GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred chhhc--------cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 76653 899988665544433 322 23459999999999865421 2389999999853
Q ss_pred ------cccccccccCCeeecCCCcEEEEecCCC--------------------------------------------CC
Q 003349 439 ------QNKTFNDHYLNVPFDLSKVIFVATANRA--------------------------------------------QP 468 (828)
Q Consensus 439 ------~~~~~~~~~~~~~~~~~~viiI~TtN~~--------------------------------------------~~ 468 (828)
|..+-+.+..-..+|.+|++||+..-.. ..
T Consensus 204 vasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFG 283 (408)
T COG1219 204 VASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFG 283 (408)
T ss_pred eeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcC
Confidence 3233333333456888999999864322 16
Q ss_pred CCccccCceE-EEEcCCCCHHHHHHHHH---HhhcHHHHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHHH
Q 003349 469 IPPPLLDRME-VIELPGYTPEEKLRIAM---RHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAAL 543 (828)
Q Consensus 469 l~~aLl~R~~-~i~~~~~~~ee~~~Il~---~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~l 543 (828)
|-|+|..|+. +..+..++.+++.+|+. +.+.+.+..-..+.+..+.++++++..+++ ...+..|+|.|+..++.+
T Consensus 284 LIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~ 363 (408)
T COG1219 284 LIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEEL 363 (408)
T ss_pred CcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 7899999998 57999999999999984 445566666666777789999999999997 566789999999999998
Q ss_pred HHHHH
Q 003349 544 ARAAA 548 (828)
Q Consensus 544 ~~~a~ 548 (828)
+....
T Consensus 364 lld~M 368 (408)
T COG1219 364 LLDVM 368 (408)
T ss_pred HHHHH
Confidence 85443
No 59
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.79 E-value=2.9e-18 Score=182.01 Aligned_cols=205 Identities=21% Similarity=0.319 Sum_probs=146.9
Q ss_pred cccchHHHHHHHHHHHHHhhh---------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhC-------CCeEEEecCCcC
Q 003349 314 DHYGLVRVKQRIIEYLAVRKL---------KPDARGPVLCFVGPPGVGKTSLASSIASALG-------RKFIRISLGGVK 377 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~---------~~~~~~~~lLL~GppGtGKT~la~~la~~l~-------~~~~~i~~~~~~ 377 (828)
+++|++++|+.+.+++.+... .......+++|+||||||||++|+++|+.+. .+++.++++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~-- 84 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD-- 84 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH--
Confidence 378999999999887765321 1223446899999999999999999998762 1333333322
Q ss_pred chhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCC----ChHHHHHHhcCcccccccccccCCeeec
Q 003349 378 DEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRG----DPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 378 ~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~----~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
+.+ .|+|.....+.+.|..+. ++||||||+|.+...... +.++.|++.|+..
T Consensus 85 ----l~~---~~~g~~~~~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~--------------- 140 (261)
T TIGR02881 85 ----LVG---EYIGHTAQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN--------------- 140 (261)
T ss_pred ----hhh---hhccchHHHHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhcc---------------
Confidence 222 577777777778887764 569999999998753211 2357777777642
Q ss_pred CCCcEEEEecCCCC-----CCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHh
Q 003349 454 LSKVIFVATANRAQ-----PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 527 (828)
Q Consensus 454 ~~~viiI~TtN~~~-----~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~ 527 (828)
..++++|++++..+ .++|+|++||. .|.|++|+.+++.+|++.++.. ....++++++.++.+.+
T Consensus 141 ~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----------~~~~l~~~a~~~l~~~~ 210 (261)
T TIGR02881 141 RNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----------REYKLTEEAKWKLREHL 210 (261)
T ss_pred CCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----------cCCccCHHHHHHHHHHH
Confidence 12456666655432 57899999996 6999999999999999987531 23578999998886633
Q ss_pred h--------hhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 528 T--------REAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 528 ~--------~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
. ...++|.++..++..++..+.+.+..
T Consensus 211 ~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 211 YKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 14568999999999888888887755
No 60
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.78 E-value=1.4e-18 Score=196.48 Aligned_cols=166 Identities=25% Similarity=0.371 Sum_probs=122.3
Q ss_pred ccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--------EEecCCcC
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFI--------RISLGGVK 377 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--------~i~~~~~~ 377 (828)
.++.|++..++.+.+.+..+..++ ..++.++|||||||||||++|+++|+.++.+++ .+++.+
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~-- 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG-- 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc--
Confidence 457899999999998887644322 245668999999999999999999999866522 222222
Q ss_pred chhhhccCcccccccCcchHHHHHHhcCC-----CCcEEEEecccccCCCCCC----C----hHHHHHHhcCcccccccc
Q 003349 378 DEADIRGHRRTYIGSMPGRLIDGLKRVGV-----CNPVMLLDEIDKTGSDVRG----D----PASALLEVLDPEQNKTFN 444 (828)
Q Consensus 378 ~~~~l~g~~~~~vg~~~g~l~~~~~~~~~-----~~~vl~iDEid~l~~~~~~----~----~~~~Ll~~ld~~~~~~~~ 444 (828)
..+ ..+|+|.....+...|..+.. .+.|+||||+|.+..++.. + ..+.|+..||...
T Consensus 260 --~eL---l~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~----- 329 (512)
T TIGR03689 260 --PEL---LNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE----- 329 (512)
T ss_pred --hhh---cccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc-----
Confidence 111 125777777666666655432 3459999999999865521 1 1356777776321
Q ss_pred cccCCeeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhh
Q 003349 445 DHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHL 498 (828)
Q Consensus 445 ~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l 498 (828)
...+++||+|||+++.|||++++ ||+ .|+|+.|+.+++.+|++.++
T Consensus 330 --------~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 --------SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred --------cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13468999999999999999998 998 69999999999999999986
No 61
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.3e-19 Score=194.93 Aligned_cols=152 Identities=23% Similarity=0.355 Sum_probs=143.1
Q ss_pred ceEEEEEEEEEcCcceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCCC-CCcccEEEEccCCCCCCCCchhHH
Q 003349 649 GEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGV 727 (828)
Q Consensus 649 g~~~~ie~~~~~g~~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~~-~~~~dv~i~~~~~~~~~~g~sa~l 727 (828)
+.+|.||+.+++|.|.++|+|++++.|+||++++.+++. ++|| ||.+.|+||+.+++++|.|+.+||
T Consensus 2 a~~V~VEv~~s~glp~~~iVGL~d~av~EsreRVraal~------------nsgf~~P~~ritiNLaPadl~KeG~~fDL 69 (490)
T COG0606 2 APPVEVEVDISNGLPGFTIVGLPDTAVKESRERVRAALT------------NSGFEFPAKRITINLAPADLPKEGSRFDL 69 (490)
T ss_pred CCccceEEEecCCCcceeeeecCcHHHHHHHHHHHHHHH------------hcCCCCChHHeeeccCcccccccccccch
Confidence 467899999999999999999999999999999999999 6888 999999999999999999999999
Q ss_pred HHHHHHHHhccCCCC--CCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccChhhhccChhhhhCCcEEEEc
Q 003349 728 TLVTALVSLFSRKRV--RADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILA 805 (828)
Q Consensus 728 aia~ai~sa~~~~~~--~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v 805 (828)
+||++++.+...+|- ..++.|+||++|+|.+++|+|+.+.+.+|.+.+.+.+++|++|..+...++ +++|+++
T Consensus 70 pIal~ilaa~~~~~~~~l~~~~~lGEL~LdG~l~~v~G~lp~~~~a~~~~~~~~i~p~~n~~Easli~-----~~~v~~~ 144 (490)
T COG0606 70 PIALGILAASGQLPADALILYEFLGELSLDGLLRPVGGVLPAALAAKEKGKRGLIVPKENAEEASLIG-----GLPVYGA 144 (490)
T ss_pred HHHHHHHHhccccchhhhhhHHhhhhhhccCcccccCCcchhHHHHhhccCCcEEcchhccccccccC-----CCCccch
Confidence 999999999998875 378999999999999999999999999999999999999999999987766 9999999
Q ss_pred CCHHHHHHHHHcC
Q 003349 806 KRMEDVLEQAFEG 818 (828)
Q Consensus 806 ~~l~e~~~~~~~~ 818 (828)
.|+.++++++ ++
T Consensus 145 ~~l~ev~~~l-~g 156 (490)
T COG0606 145 RYLEEVVNFL-EG 156 (490)
T ss_pred hhHHHHHHHh-cC
Confidence 9999999985 44
No 62
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.78 E-value=3.8e-18 Score=185.53 Aligned_cols=243 Identities=21% Similarity=0.304 Sum_probs=169.5
Q ss_pred hcHHHHHHhhcccccchHHHHHHHHHHHHHhhh----C----CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 302 LDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL----K----PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 302 ~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~----~----~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
+........|++.++||+++++.+...+..... . ....+.++||+||||||||++|+++|+.++.+++.+++
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 345677888999999999999999888865311 1 11235689999999999999999999999999999987
Q ss_pred CCcCchhh-------------------------------------------hccCc------------------------
Q 003349 374 GGVKDEAD-------------------------------------------IRGHR------------------------ 386 (828)
Q Consensus 374 ~~~~~~~~-------------------------------------------l~g~~------------------------ 386 (828)
+.+..... +.+..
T Consensus 84 t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l 163 (443)
T PRK05201 84 TKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKL 163 (443)
T ss_pred hhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHH
Confidence 64432100 00000
Q ss_pred ---------------c-cc-cc--cCcc------hHH-----------------------------------------HH
Q 003349 387 ---------------R-TY-IG--SMPG------RLI-----------------------------------------DG 400 (828)
Q Consensus 387 ---------------~-~~-vg--~~~g------~l~-----------------------------------------~~ 400 (828)
. .. ++ ..+| .+. .+
T Consensus 164 ~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~a 243 (443)
T PRK05201 164 REGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEA 243 (443)
T ss_pred HcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 0 00 00 0000 001 11
Q ss_pred HHhcCCCCcEEEEecccccCCCCC--------CChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC----CCCC
Q 003349 401 LKRVGVCNPVMLLDEIDKTGSDVR--------GDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN----RAQP 468 (828)
Q Consensus 401 ~~~~~~~~~vl~iDEid~l~~~~~--------~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN----~~~~ 468 (828)
+..+ ...+|+|||||||+..... ...|..||.++++..... .+ .+++..+++|||+.- .++.
T Consensus 244 i~~a-e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~---k~--~~i~T~~ILFI~~GAF~~~kp~D 317 (443)
T PRK05201 244 IERV-EQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST---KY--GMVKTDHILFIASGAFHVSKPSD 317 (443)
T ss_pred HHHH-HcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee---cc--eeEECCceeEEecCCcCCCChhh
Confidence 1211 2467999999999985431 124899999999754332 22 578899999999643 4567
Q ss_pred CCccccCceE-EEEcCCCCHHHHHHHHH---HhhcHHHHHhcCCCCcccccCHHHHHHHHHHhh------hhhchHHHHH
Q 003349 469 IPPPLLDRME-VIELPGYTPEEKLRIAM---RHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT------REAGVRNLER 538 (828)
Q Consensus 469 l~~aLl~R~~-~i~~~~~~~ee~~~Il~---~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~------~~~g~R~l~~ 538 (828)
|-|+|..||. ++.+.+++.++..+|+. +.+.+.+..........+.++++++..|++... .+.|+|.|+.
T Consensus 318 lIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 397 (443)
T PRK05201 318 LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHT 397 (443)
T ss_pred ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 8999999998 69999999999999994 334444444444455669999999999998333 4899999999
Q ss_pred HHHHHHHHHHHH
Q 003349 539 NLAALARAAAVK 550 (828)
Q Consensus 539 ~i~~l~~~a~~~ 550 (828)
.+++++..+.+.
T Consensus 398 I~E~~L~d~~Fe 409 (443)
T PRK05201 398 VMEKLLEDISFE 409 (443)
T ss_pred HHHHHHHHHhcc
Confidence 999998655543
No 63
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2e-18 Score=203.21 Aligned_cols=211 Identities=23% Similarity=0.292 Sum_probs=172.0
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCC-------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhcc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~-------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g 384 (828)
.+++.|++.++..+.+.+..+.+++. .++.++||+||||||||..|+++|..+....-.+.+-.-.....+
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l-- 341 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL-- 341 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh--
Confidence 46788999999999999988877654 355679999999999999999999998655444443322221112
Q ss_pred CcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCC-------CCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 385 HRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDV-------RGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~-------~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.+|+|+.+.++.-.|..+....| |+|+||||.++|.+ +....+.||.+||+... .+.
T Consensus 342 --skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds-------------Rgq 406 (1080)
T KOG0732|consen 342 --SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS-------------RGQ 406 (1080)
T ss_pred --ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC-------------CCc
Confidence 27999999999999998876655 99999999998866 22347889999986432 347
Q ss_pred cEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 457 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
+++|++||+++.++|||++ ||+ .++|+.|+.+++.+|+..|-. ++...++...+.++++...++.|
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtr----------kw~~~i~~~l~~~la~~t~gy~g- 475 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTR----------KWEPPISRELLLWLAEETSGYGG- 475 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhcc----------CCCCCCCHHHHHHHHHhccccch-
Confidence 8999999999999999987 998 799999999999999998843 45578889999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003349 534 RNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 534 R~l~~~i~~l~~~a~~~~l~~ 554 (828)
++|..+|..|++..+++
T Consensus 476 ----aDlkaLCTeAal~~~~r 492 (1080)
T KOG0732|consen 476 ----ADLKALCTEAALIALRR 492 (1080)
T ss_pred ----HHHHHHHHHHhhhhhcc
Confidence 78999999999999987
No 64
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.77 E-value=9.2e-18 Score=182.41 Aligned_cols=240 Identities=20% Similarity=0.312 Sum_probs=167.1
Q ss_pred HHHHHhhcccccchHHHHHHHHHHHHHhhhC--------CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc
Q 003349 305 KAAKERLDSDHYGLVRVKQRIIEYLAVRKLK--------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 376 (828)
Q Consensus 305 ~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~--------~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~ 376 (828)
.+....|++.++||+++++.+...+...... ....+.++||+||||||||++|+++|+.++.+++.++++.+
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 4567788899999999999998777653211 12245689999999999999999999999999999886533
Q ss_pred Cc-------h-h---hhccC--------------------------------cccccc----------------------
Q 003349 377 KD-------E-A---DIRGH--------------------------------RRTYIG---------------------- 391 (828)
Q Consensus 377 ~~-------~-~---~l~g~--------------------------------~~~~vg---------------------- 391 (828)
.. . . .+... .....|
T Consensus 84 ~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g 163 (441)
T TIGR00390 84 TEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREG 163 (441)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcC
Confidence 21 0 0 00000 000000
Q ss_pred --------------------c--Ccc------hHH-----------------------------------------HHHH
Q 003349 392 --------------------S--MPG------RLI-----------------------------------------DGLK 402 (828)
Q Consensus 392 --------------------~--~~g------~l~-----------------------------------------~~~~ 402 (828)
. .+| .+. +++.
T Consensus 164 ~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~ 243 (441)
T TIGR00390 164 ELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAID 243 (441)
T ss_pred CccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 0 000 000 1111
Q ss_pred hcCCCCcEEEEecccccCCCCC--------CChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC----CCCCCC
Q 003349 403 RVGVCNPVMLLDEIDKTGSDVR--------GDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN----RAQPIP 470 (828)
Q Consensus 403 ~~~~~~~vl~iDEid~l~~~~~--------~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN----~~~~l~ 470 (828)
. ....+|+|||||||+..... ...|..||.++++..... .+ .+++..+++|||+.- .++.|-
T Consensus 244 ~-~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~---k~--~~v~T~~ILFI~~GAF~~~kp~DlI 317 (441)
T TIGR00390 244 A-VEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT---KY--GMVKTDHILFIAAGAFQLAKPSDLI 317 (441)
T ss_pred H-HHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee---cc--eeEECCceeEEecCCcCCCChhhcc
Confidence 1 12467999999999985431 124899999999754332 22 478899999999753 456799
Q ss_pred ccccCceE-EEEcCCCCHHHHHHHHH---HhhcHHHHHhcCCCCcccccCHHHHHHHHHHhh------hhhchHHHHHHH
Q 003349 471 PPLLDRME-VIELPGYTPEEKLRIAM---RHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT------REAGVRNLERNL 540 (828)
Q Consensus 471 ~aLl~R~~-~i~~~~~~~ee~~~Il~---~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~------~~~g~R~l~~~i 540 (828)
|+|..||. ++.+.+++.++..+|+. +.+.+.+..........+.++++++..|++... .+.|+|.|+..+
T Consensus 318 PEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrtil 397 (441)
T TIGR00390 318 PELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVL 397 (441)
T ss_pred HHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHH
Confidence 99999998 69999999999999993 335554444444555679999999999998332 589999999999
Q ss_pred HHHHHHHHHH
Q 003349 541 AALARAAAVK 550 (828)
Q Consensus 541 ~~l~~~a~~~ 550 (828)
+.++..+.+.
T Consensus 398 E~~l~d~~fe 407 (441)
T TIGR00390 398 ERLLEDISFE 407 (441)
T ss_pred HHHHHHHHhc
Confidence 9998665544
No 65
>CHL00176 ftsH cell division protein; Validated
Probab=99.77 E-value=3.5e-18 Score=199.64 Aligned_cols=204 Identities=27% Similarity=0.350 Sum_probs=147.4
Q ss_pred ccccchHHHHHHHHHHHHHhhh------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~------~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~ 386 (828)
+++.|++++++.+.+.+..... .....+.++||+||||||||++|+++|+.++.+++.++++....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~-------- 254 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE-------- 254 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH--------
Confidence 3577888888888776644221 11234568999999999999999999999999999888776432
Q ss_pred ccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCC------CC----hHHHHHHhcCcccccccccccCCeeecCC
Q 003349 387 RTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVR------GD----PASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 387 ~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~------~~----~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
.+.|.....+...|..+... ++|+||||+|.+...+. ++ ..+.|+..||.. . ...
T Consensus 255 -~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~-----~--------~~~ 320 (638)
T CHL00176 255 -MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF-----K--------GNK 320 (638)
T ss_pred -HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc-----c--------CCC
Confidence 34455455677777776543 45999999999975431 11 133444444421 1 124
Q ss_pred CcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhc
Q 003349 456 KVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 532 (828)
Q Consensus 456 ~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g 532 (828)
+++||+|||+++.++++|++ ||+ .|.|+.|+.++|.+|++.++... ...++..+..++....+..|
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-----------~~~~d~~l~~lA~~t~G~sg 389 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-----------KLSPDVSLELIARRTPGFSG 389 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-----------ccchhHHHHHHHhcCCCCCH
Confidence 68999999999999999997 897 79999999999999999986420 12234567777777766666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 003349 533 VRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 533 ~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+.|.++|++|++.+.++
T Consensus 390 -----aDL~~lvneAal~a~r~ 406 (638)
T CHL00176 390 -----ADLANLLNEAAILTARR 406 (638)
T ss_pred -----HHHHHHHHHHHHHHHHh
Confidence 78888888888877665
No 66
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.2e-18 Score=177.68 Aligned_cols=214 Identities=24% Similarity=0.428 Sum_probs=159.8
Q ss_pred HHHHHhhcccccchHHHHHHHHHHHHHhhhCCC-------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcC
Q 003349 305 KAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVK 377 (828)
Q Consensus 305 ~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~-------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~ 377 (828)
+...++..+.+.|.-++...+.+.+..+..++. .++.+++||||||+|||.+|+++|..++..++.+..+.+.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 334445566788999999999998877665443 3556899999999999999999999999999999888876
Q ss_pred chhhhccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCC--C-----ChHHHHHHhcCcccccccccccCC
Q 003349 378 DEADIRGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVR--G-----DPASALLEVLDPEQNKTFNDHYLN 449 (828)
Q Consensus 378 ~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~--~-----~~~~~Ll~~ld~~~~~~~~~~~~~ 449 (828)
+ +|+|+....+++.|+.+... ++++|+||||.....+. + ..+.+|.++++.. ..|.
T Consensus 204 ~---------kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqm--dgfd----- 267 (388)
T KOG0651|consen 204 D---------KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQM--DGFD----- 267 (388)
T ss_pred h---------hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhh--ccch-----
Confidence 6 89999988889999887654 45999999999876441 1 1267788888732 2222
Q ss_pred eeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHH
Q 003349 450 VPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 526 (828)
Q Consensus 450 ~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~ 526 (828)
.+.++-+|+|+|+++.|+|||++ |++ .+++|.|....+..|++-|-. .+..+| .++++++-.+++.
T Consensus 268 ---~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~--~i~~~G------eid~eaivK~~d~ 336 (388)
T KOG0651|consen 268 ---TLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQ--PIDFHG------EIDDEAILKLVDG 336 (388)
T ss_pred ---hcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccc--cccccc------cccHHHHHHHHhc
Confidence 24578899999999999999998 998 799999999999998877632 122222 4566666666654
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHH
Q 003349 527 YTREAGVRNLERNLAALARAAAVKVAE 553 (828)
Q Consensus 527 ~~~~~g~R~l~~~i~~l~~~a~~~~l~ 553 (828)
+. | ..+.+.|++|-+-.++
T Consensus 337 f~---g-----ad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 337 FN---G-----ADLRNVCTEAGMFAIP 355 (388)
T ss_pred cC---h-----HHHhhhcccccccccc
Confidence 43 3 3466677666544433
No 67
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.9e-17 Score=165.51 Aligned_cols=187 Identities=25% Similarity=0.319 Sum_probs=145.2
Q ss_pred hcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccccc
Q 003349 311 LDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYI 390 (828)
Q Consensus 311 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~v 390 (828)
...+++||+++|+.+.-++...+... ..--|+||+||||.||||||..+|++++..+...+...+
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~-e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l-------------- 88 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRG-EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL-------------- 88 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcC-CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc--------------
Confidence 34568999999999999998877644 345589999999999999999999999877665442222
Q ss_pred ccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccc---cCCeeecCCCcEEEEecCCCC
Q 003349 391 GSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDH---YLNVPFDLSKVIFVATANRAQ 467 (828)
Q Consensus 391 g~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~---~~~~~~~~~~viiI~TtN~~~ 467 (828)
..++.+...+.... .+.|+|||||+++++.. -..|+..|++-+....... .-.+.+++..+.+|++|.+..
T Consensus 89 -eK~gDlaaiLt~Le-~~DVLFIDEIHrl~~~v----EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G 162 (332)
T COG2255 89 -EKPGDLAAILTNLE-EGDVLFIDEIHRLSPAV----EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG 162 (332)
T ss_pred -cChhhHHHHHhcCC-cCCeEEEehhhhcChhH----HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc
Confidence 23456666665543 35699999999999987 7888899986544333222 224567889999999999999
Q ss_pred CCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhh
Q 003349 468 PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 528 (828)
Q Consensus 468 ~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~ 528 (828)
.+..+|++||- +..+..|+.+++.+|+.+.-. .-++.++++....|+.+.-
T Consensus 163 ~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~----------~l~i~i~~~~a~eIA~rSR 214 (332)
T COG2255 163 MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK----------ILGIEIDEEAALEIARRSR 214 (332)
T ss_pred cccchhHHhcCCeeeeecCCHHHHHHHHHHHHH----------HhCCCCChHHHHHHHHhcc
Confidence 99999999996 689999999999999988631 2247889999888887543
No 68
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.4e-17 Score=188.64 Aligned_cols=206 Identities=27% Similarity=0.344 Sum_probs=160.2
Q ss_pred hcccccchHHHHHHHHHHHHHhhh---C---CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhcc
Q 003349 311 LDSDHYGLVRVKQRIIEYLAVRKL---K---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 311 l~~~i~G~~~~~~~l~~~l~~~~~---~---~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g 384 (828)
...++.|.+++|+.+.+.+...+. + +..-+.++||+||||||||.||+++|...+.||+.++.+....
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe------ 221 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE------ 221 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh------
Confidence 345688999999999887754332 1 1234568999999999999999999999999999999888665
Q ss_pred CcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCC-----C-C----hHHHHHHhcCcccccccccccCCeeec
Q 003349 385 HRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVR-----G-D----PASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~-----~-~----~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
.|+|....+++..|..+... ++|+||||||.....+. + | ..|.||.-||. |..
T Consensus 222 ---mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG-----F~~-------- 285 (596)
T COG0465 222 ---MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG-----FGG-------- 285 (596)
T ss_pred ---hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc-----CCC--------
Confidence 57888888899999887754 44999999999987762 1 1 25667766663 221
Q ss_pred CCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhh
Q 003349 454 LSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 530 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~ 530 (828)
...+++|++||+++-+|+||+| ||+ .|.++.|+-..|.+|++-|+.+..+. ..++ +..++....+.
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~--------~~Vd---l~~iAr~tpGf 354 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA--------EDVD---LKKIARGTPGF 354 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC--------CcCC---HHHHhhhCCCc
Confidence 3468999999999999999998 998 79999999999999999886422111 1222 33367777788
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHH
Q 003349 531 AGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 531 ~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+| ..+.+++.+|++-+.++
T Consensus 355 sG-----AdL~nl~NEAal~aar~ 373 (596)
T COG0465 355 SG-----ADLANLLNEAALLAARR 373 (596)
T ss_pred cc-----chHhhhHHHHHHHHHHh
Confidence 88 88999999999988887
No 69
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.4e-18 Score=186.23 Aligned_cols=211 Identities=24% Similarity=0.295 Sum_probs=165.1
Q ss_pred HHhhcccccchHHHHHHHHHHHHHhhhCCC------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhh
Q 003349 308 KERLDSDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEAD 381 (828)
Q Consensus 308 ~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~ 381 (828)
..+...++.|++.+++.+.+.+.++.+.+. .+...+||.||||+|||+|++++|.+.+..|..++.+.+.+
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts--- 224 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS--- 224 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh---
Confidence 334557788999999999999988766443 34458999999999999999999999999999998777665
Q ss_pred hccCcccccccCcchHHHHHHhcCCCCc-EEEEecccccCCCCCCCh--------HHHHHHhcCcccccccccccCCeee
Q 003349 382 IRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEIDKTGSDVRGDP--------ASALLEVLDPEQNKTFNDHYLNVPF 452 (828)
Q Consensus 382 l~g~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid~l~~~~~~~~--------~~~Ll~~ld~~~~~~~~~~~~~~~~ 452 (828)
+|+|+.+..++..|.-+....| |+|+||+|++..++.... ...|++..-. .. .
T Consensus 225 ------K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~------~s------~ 286 (428)
T KOG0740|consen 225 ------KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGK------NS------A 286 (428)
T ss_pred ------hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccc------cC------C
Confidence 8999998888888877765544 999999999987652211 2334443221 00 1
Q ss_pred cCCCcEEEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 453 DLSKVIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 453 ~~~~viiI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
.-.++++|+|||.|+.+|+++++||. ++++|.|+.+.|..+++..+.. + ...+++..+..|++...+++
T Consensus 287 ~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~-----~-----~~~l~~~d~~~l~~~Tegys 356 (428)
T KOG0740|consen 287 PDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE-----Q-----PNGLSDLDISLLAKVTEGYS 356 (428)
T ss_pred CCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh-----C-----CCCccHHHHHHHHHHhcCcc
Confidence 12378999999999999999999997 7899999999999999988642 1 24567778888888777777
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
| ..|..+|.+|++.-++.
T Consensus 357 g-----sdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 357 G-----SDITALCKEAAMGPLRE 374 (428)
T ss_pred c-----ccHHHHHHHhhcCchhh
Confidence 7 88999999998876655
No 70
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.74 E-value=2.7e-17 Score=174.46 Aligned_cols=183 Identities=22% Similarity=0.329 Sum_probs=130.6
Q ss_pred ccccchHHHHHH---HHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccc
Q 003349 313 SDHYGLVRVKQR---IIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTY 389 (828)
Q Consensus 313 ~~i~G~~~~~~~---l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~ 389 (828)
++++||+..... +...+. ...-++++|||||||||||+|+.||+..+..|..++....
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~------------- 84 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS------------- 84 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-------------
Confidence 356777765421 222222 1334578999999999999999999999999998874321
Q ss_pred cccCcchHHHHHHhcC-----CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEE--e
Q 003349 390 IGSMPGRLIDGLKRVG-----VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA--T 462 (828)
Q Consensus 390 vg~~~g~l~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~--T 462 (828)
.-..+++.+..+. ....|+|+|||+++.... |..||..++.+ .+++|+ |
T Consensus 85 ---gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q----QD~lLp~vE~G-----------------~iilIGATT 140 (436)
T COG2256 85 ---GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ----QDALLPHVENG-----------------TIILIGATT 140 (436)
T ss_pred ---cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh----hhhhhhhhcCC-----------------eEEEEeccC
Confidence 0123444444331 124599999999999887 99999999843 346666 3
Q ss_pred cCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHH
Q 003349 463 ANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAA 542 (828)
Q Consensus 463 tN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~ 542 (828)
.|+...+++||+||+.++.|.+++.++..+++++.+. ....++....+.++++++++++....++ +|..-..++-
T Consensus 141 ENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~---~~~rgl~~~~~~i~~~a~~~l~~~s~GD--~R~aLN~LE~ 215 (436)
T COG2256 141 ENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL---DEERGLGGQIIVLDEEALDYLVRLSNGD--ARRALNLLEL 215 (436)
T ss_pred CCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh---hhhcCCCcccccCCHHHHHHHHHhcCch--HHHHHHHHHH
Confidence 4667799999999999999999999999999988543 2445566666779999999999876553 3443344443
Q ss_pred H
Q 003349 543 L 543 (828)
Q Consensus 543 l 543 (828)
+
T Consensus 216 ~ 216 (436)
T COG2256 216 A 216 (436)
T ss_pred H
Confidence 3
No 71
>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]
Probab=99.74 E-value=3.8e-17 Score=160.68 Aligned_cols=153 Identities=17% Similarity=0.154 Sum_probs=118.4
Q ss_pred ccCCCCCCCCCCccccccceeEEEEEEeccCccCCCCceEEEEEEEEeeEEEEeeecc-cCCeEEEEEEEeccchhhhhc
Q 003349 30 QVGASDGKNQQEVIHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELST-RGTYYTARISSLEMTKIEMEQ 108 (828)
Q Consensus 30 ~~~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~~~~dG~~~~~I~~~G~~RfrI~~~~~-~~~y~~a~Ve~l~~~~~~~~~ 108 (828)
+++.|.++..+.+..+..|||+|+|++|+.. +|| +|.|.++|.+||||.++.. ++||++|.|+|++++ +.
T Consensus 55 ~i~~~~~~~~~~~~~ls~VGcla~I~~~~~~---~DG--r~~I~~~G~~RFRv~~~~~~~~pyr~~~~~~~~D~----~~ 125 (221)
T COG2802 55 LIDRGREVGGGLPPELSDVGCLARITEFEEL---GDG--RYLILVRGGQRFRVLEELADDDPYRRARVPFWPDL----PS 125 (221)
T ss_pred EecccccccCCCcchhhccceeEEEeEeeEc---CCC--cEEEEEEeEEEEEEEEEecccCcceeeccccCCCC----cc
Confidence 5666666777778899999999999999999 999 9999999999999999864 999999999999974 22
Q ss_pred cCC-ChHHHH-HHHHHHHHHHHHHHHhhhccCchhhHHHhhccCChHHHHHHHHHcCCCCHHHHHHHhhccCHHHHHHHH
Q 003349 109 VEQ-DPDFIA-LSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKA 186 (828)
Q Consensus 109 ~~~-~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~~la~~lpl~~~~kq~LLe~~d~~~Rl~~l 186 (828)
.+. ..++.. +.+.+...++.|.... .....+......++.|+++.|+.++|+++.+||++|+..|+..|++.+
T Consensus 126 ~~~~a~evdr~~~~~l~~~~r~~~~~~-----~l~~d~~~~~~~~~~~l~n~L~~llp~~~~~k~~ll~a~d~~~r~~~L 200 (221)
T COG2802 126 DPDGAEEVDRRLDALLMRAARAYLQRL-----ELLADWESYERASNADLANRLYMLLPFDPAEKQALLEAPDLPTRAERL 200 (221)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhhhc-----chhhhhcccccccHHHHHHHHHHhCCCChhHHHHHHhccchHHHHHHH
Confidence 222 122222 2233455555554432 112233334456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003349 187 TELVDRHLQS 196 (828)
Q Consensus 187 ~~~l~~~~~~ 196 (828)
+.+++.....
T Consensus 201 ~~~~e~l~a~ 210 (221)
T COG2802 201 IRLLEQLLAR 210 (221)
T ss_pred HHHHHHHHHH
Confidence 9999866554
No 72
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.73 E-value=1.9e-17 Score=202.51 Aligned_cols=191 Identities=13% Similarity=0.145 Sum_probs=135.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh-------hh-ccC------------------------c
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA-------DI-RGH------------------------R 386 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~-------~l-~g~------------------------~ 386 (828)
++.++||+||||||||.||+++|...+.|++.++++...+.. .+ .|. .
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~ 1708 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNAL 1708 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchh
Confidence 456899999999999999999999999999999877654210 00 000 0
Q ss_pred ccccccCcc--hHHHHHHhcCCC-CcEEEEecccccCCCCCCC-hHHHHHHhcCcccccccccccCCeeecCCCcEEEEe
Q 003349 387 RTYIGSMPG--RLIDGLKRVGVC-NPVMLLDEIDKTGSDVRGD-PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVAT 462 (828)
Q Consensus 387 ~~~vg~~~g--~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~~-~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~T 462 (828)
..+++...+ .++..|..|... ++||||||||.+....... ..+.|+..|+..... ....+++||||
T Consensus 1709 ~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~----------~s~~~VIVIAA 1778 (2281)
T CHL00206 1709 TMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER----------CSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc----------CCCCCEEEEEe
Confidence 011223333 367778777654 4599999999998763222 257777777742100 12357899999
Q ss_pred cCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCH--HHHHHHHHHhhhhhchHHHH
Q 003349 463 ANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPE--AMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 463 tN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~--~~l~~l~~~~~~~~g~R~l~ 537 (828)
||+|+.+||||++ ||+ .|.++.|+..+|.+++...+.. . ++.+.+ ..+..++....+.+|
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t-----k-----g~~L~~~~vdl~~LA~~T~GfSG----- 1843 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT-----R-----GFHLEKKMFHTNGFGSITMGSNA----- 1843 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh-----c-----CCCCCcccccHHHHHHhCCCCCH-----
Confidence 9999999999998 998 7999999998888887654210 0 122221 125667777777788
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003349 538 RNLAALARAAAVKVAEQ 554 (828)
Q Consensus 538 ~~i~~l~~~a~~~~l~~ 554 (828)
++|.++|.+|+..++++
T Consensus 1844 ADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1844 RDLVALTNEALSISITQ 1860 (2281)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 89999999999998887
No 73
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.71 E-value=8.3e-17 Score=194.58 Aligned_cols=205 Identities=25% Similarity=0.337 Sum_probs=154.1
Q ss_pred cccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhcc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g 384 (828)
.++++|++++++.+.+++..+..++ -.++.++||+||||||||++|+++|+.++.+++.++++...+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~------ 250 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS------ 250 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc------
Confidence 3468899999999999887654322 245678999999999999999999999999998887665432
Q ss_pred CcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC-------ChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 385 HRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.|.|.....+...|..+... ++|+||||+|.+.+++.. ..++.|+++|+... ....
T Consensus 251 ---~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-------------~~~~ 314 (733)
T TIGR01243 251 ---KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-------------GRGR 314 (733)
T ss_pred ---ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc-------------cCCC
Confidence 46677667777777765433 359999999999876522 12567788887432 1235
Q ss_pred cEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCccccc-CHHHHHHHHHHhhhhhc
Q 003349 457 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI-PEAMVKLVIQRYTREAG 532 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i-~~~~l~~l~~~~~~~~g 532 (828)
+++|+|||+++.+++++++ ||+ .+.|+.|+.++|.+|++.+... ..+ .+..+..++..+.+..|
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~------------~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN------------MPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC------------CCCccccCHHHHHHhCCCCCH
Confidence 7899999999999999997 997 6999999999999999976421 122 23345667776666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 003349 533 VRNLERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 533 ~R~l~~~i~~l~~~a~~~~l~~~ 555 (828)
+.+..+|+.|+..++++.
T Consensus 383 -----adl~~l~~~a~~~al~r~ 400 (733)
T TIGR01243 383 -----ADLAALAKEAAMAALRRF 400 (733)
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 678888999998888773
No 74
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.1e-17 Score=180.82 Aligned_cols=180 Identities=22% Similarity=0.341 Sum_probs=135.7
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCe-EEEecCCcCchhhhccCcccccccCcchHHHHHHhcCC------CC---cE
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKF-IRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGV------CN---PV 410 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~-~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~------~~---~v 410 (828)
.++|||||||||||.+||.|.+.++..- -.++...+.+ +|+|+++.+++..|..+.. .+ .|
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~---------KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHI 327 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN---------KYVGESEENVRKLFADAEEEQRRLGANSGLHI 327 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH---------HhhcccHHHHHHHHHhHHHHHHhhCccCCceE
Confidence 4799999999999999999999997543 3444444333 8999999999999976532 11 19
Q ss_pred EEEecccccCCCCC---C------ChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccC--ceEE
Q 003349 411 MLLDEIDKTGSDVR---G------DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RMEV 479 (828)
Q Consensus 411 l~iDEid~l~~~~~---~------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~~ 479 (828)
|+|||||.++..+. + ...|.||.-||+.. .+.|+++|+.||+.+.+|+||++ ||++
T Consensus 328 IIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe-------------qLNNILVIGMTNR~DlIDEALLRPGRlEV 394 (744)
T KOG0741|consen 328 IIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE-------------QLNNILVIGMTNRKDLIDEALLRPGRLEV 394 (744)
T ss_pred EEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH-------------hhhcEEEEeccCchhhHHHHhcCCCceEE
Confidence 99999999997652 1 23789999998642 25789999999999999999998 9995
Q ss_pred -EEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 480 -IELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 480 -i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+++..|++..|.+|++.|..+ +.+++.-. -.++-+-+..+.++|+ | +.|+.+++.|..-++.+
T Consensus 395 qmEIsLPDE~gRlQIl~IHT~r--Mre~~~l~--~dVdl~elA~lTKNfS---G-----AEleglVksA~S~A~nR 458 (744)
T KOG0741|consen 395 QMEISLPDEKGRLQILKIHTKR--MRENNKLS--ADVDLKELAALTKNFS---G-----AELEGLVKSAQSFAMNR 458 (744)
T ss_pred EEEEeCCCccCceEEEEhhhhh--hhhcCCCC--CCcCHHHHHHHhcCCc---h-----hHHHHHHHHHHHHHHHh
Confidence 999999999999999988643 23333222 2334344444455555 4 78899999888877777
No 75
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=7.8e-17 Score=179.98 Aligned_cols=204 Identities=25% Similarity=0.308 Sum_probs=165.1
Q ss_pred ccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccC
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~ 385 (828)
..+.|.......+.+.+..+...+ ...+.++|+|||||||||.+++++|+..+..+..+++..+..
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~------- 256 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELIS------- 256 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHH-------
Confidence 457788888888888877665433 246678999999999999999999999998888887665443
Q ss_pred cccccccCcchHHHHHHhcCCCC--cEEEEecccccCCCCCCC------hHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 386 RRTYIGSMPGRLIDGLKRVGVCN--PVMLLDEIDKTGSDVRGD------PASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~~~--~vl~iDEid~l~~~~~~~------~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
+|.|+++..++.+|..+.... .++||||+|.+.+++.+. ..+.|+.+||... .-+++
T Consensus 257 --k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-------------~~~~v 321 (693)
T KOG0730|consen 257 --KFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-------------PDAKV 321 (693)
T ss_pred --hcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-------------CcCcE
Confidence 788999999999999876554 499999999999976331 2577888888532 13578
Q ss_pred EEEEecCCCCCCCccccC-ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 458 IFVATANRAQPIPPPLLD-RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~-R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
++++|+|+++.+++++++ ||+ .+.+..|+..+|..|++.+..+ ++ .. ++..+.+++....++.|
T Consensus 322 ivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~-----~~-----~~-~~~~l~~iA~~thGyvG--- 387 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKK-----MN-----LL-SDVDLEDIAVSTHGYVG--- 387 (693)
T ss_pred EEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHh-----cC-----Cc-chhhHHHHHHHccchhH---
Confidence 999999999999999997 998 7999999999999999988631 11 11 56778888888778888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003349 536 LERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 536 l~~~i~~l~~~a~~~~l~~ 554 (828)
+++..+|++|++..+++
T Consensus 388 --aDL~~l~~ea~~~~~r~ 404 (693)
T KOG0730|consen 388 --ADLAALCREASLQATRR 404 (693)
T ss_pred --HHHHHHHHHHHHHHhhh
Confidence 89999999999998887
No 76
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.70 E-value=1.3e-16 Score=188.67 Aligned_cols=205 Identities=23% Similarity=0.293 Sum_probs=149.6
Q ss_pred cccccchHHHHHHHHHHHHHhhh------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccC
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~------~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~ 385 (828)
..++.|.+.+++++.+.+..... .....+.+++|+||||||||++++++|+.++.+++.++++.+..
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~------- 223 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE------- 223 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH-------
Confidence 34577888888888877654211 11123457999999999999999999999999999988766433
Q ss_pred cccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC-----C-----hHHHHHHhcCcccccccccccCCeeecC
Q 003349 386 RRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~-----~-----~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.++|.....+...|..+... ++|+||||+|.+...+.. + ..+.|+..||.. . +.
T Consensus 224 --~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~-----~--------~~ 288 (644)
T PRK10733 224 --MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-----E--------GN 288 (644)
T ss_pred --hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcc-----c--------CC
Confidence 35566666677777766543 459999999999765421 1 245566556531 1 13
Q ss_pred CCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 455 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 455 ~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
.+++||+|||+++.+|+++++ ||+ .|+|+.|+.++|.+|++.++.+ ..+. ..+ .+..+++...+..
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~-----~~l~---~~~---d~~~la~~t~G~s 357 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR-----VPLA---PDI---DAAIIARGTPGFS 357 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc-----CCCC---CcC---CHHHHHhhCCCCC
Confidence 468999999999999999997 998 7999999999999999998632 1111 122 2345666666777
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
| +.|.++|++|+..+.++
T Consensus 358 g-----adl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 358 G-----ADLANLVNEAALFAARG 375 (644)
T ss_pred H-----HHHHHHHHHHHHHHHHc
Confidence 7 89999999999988876
No 77
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.70 E-value=2.5e-17 Score=181.27 Aligned_cols=112 Identities=23% Similarity=0.242 Sum_probs=96.8
Q ss_pred ceeecccchhhccCCCccCchhhhhhcCCCceeEEEEEeecCceEEEEEEEEEc---CcceEEEeeCCChHHHHHHHHHH
Q 003349 607 PLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMR---GKGELHLTGQLGDVIKESAQIAL 683 (828)
Q Consensus 607 ~~~i~~~~L~~~l~~~~~~~~~~~~~~~~~G~v~g~~~~~~~g~~~~ie~~~~~---g~~~~~~~G~~~~~~~es~~~a~ 683 (828)
.|.|+.++|..+.+|+.++...+ ....+|.+...++.|....+++||+.+++ |.|+++.+|.
T Consensus 257 ~F~i~~~Gl~~v~~ps~~fl~~~--~~~~~g~~~~~~~eg~r~~~~e~qal~~~~~~~~p~r~~~g~------------- 321 (372)
T cd01121 257 VFEMRENGLREVSNPSELFLSER--EEDVPGSAVTVVMEGSRPLLVEVQALVSPTSYANPRRVAVGF------------- 321 (372)
T ss_pred EEEECCCCeEEccChhhheecCC--CCCCCccEEEeeccCCcceeeEeehhccCCCCCCCceeEcCC-------------
Confidence 68999999999999999888332 33456887777776666677777777765 6799999995
Q ss_pred HHHHHhhhhhhhhhhccCCC-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHh
Q 003349 684 TWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSL 736 (828)
Q Consensus 684 ~~~~~~~~~l~~~~~~~~~~-~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa 736 (828)
+.||+.+|.++++|+.|+ +.++|||||+ .||+++++|++|||+++|++|+
T Consensus 322 --~~~r~~~~~avl~k~~~~~~~~~dv~~~~-~gg~~~~e~~~dla~~~a~~ss 372 (372)
T cd01121 322 --DPNRLSMLLAVLEKRLGLPLADQDVFVNV-AGGLKITEPAADLAVALAIVSS 372 (372)
T ss_pred --ChhHHHHHHHHHHHHcCCCccCCCEEEEc-cCCeeccCcHHHHHHHHHHHcC
Confidence 899999999999999999 9999999999 9999999999999999999986
No 78
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.8e-16 Score=164.37 Aligned_cols=200 Identities=23% Similarity=0.339 Sum_probs=154.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHH-HHHhcC-----CCCcEEEEe
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLID-GLKRVG-----VCNPVMLLD 414 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~-~~~~~~-----~~~~vl~iD 414 (828)
.++||.||+|+|||.||+.||+.++.||...+|+.++-. +|+|+.-..+.+ .+..+. ...+|+|||
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQA--------GYVGeDVEsvi~KLl~~A~~nVekAQqGIVflD 298 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQA--------GYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLD 298 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhc--------ccccccHHHHHHHHHHHccCCHHHHhcCeEEEe
Confidence 489999999999999999999999999999999986542 799987554443 333332 235699999
Q ss_pred cccccCCCC---------CC-ChHHHHHHhcCcccccc------cccccCCeeecCCCcEEEEecCCC------------
Q 003349 415 EIDKTGSDV---------RG-DPASALLEVLDPEQNKT------FNDHYLNVPFDLSKVIFVATANRA------------ 466 (828)
Q Consensus 415 Eid~l~~~~---------~~-~~~~~Ll~~ld~~~~~~------~~~~~~~~~~~~~~viiI~TtN~~------------ 466 (828)
|+|++.... .| ..|.+||.+++..-.+. -......+.+|..+++||+..-..
T Consensus 299 EvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d 378 (564)
T KOG0745|consen 299 EVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDD 378 (564)
T ss_pred hhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcc
Confidence 999997433 11 24889999998543221 122234577899999999864321
Q ss_pred --------------------------------------------CCCCccccCceE-EEEcCCCCHHHHHHHHH---Hhh
Q 003349 467 --------------------------------------------QPIPPPLLDRME-VIELPGYTPEEKLRIAM---RHL 498 (828)
Q Consensus 467 --------------------------------------------~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~---~~l 498 (828)
..|-|+|..||. ++.|..++..++++|+. +.|
T Consensus 379 ~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL 458 (564)
T KOG0745|consen 379 KSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNAL 458 (564)
T ss_pred hhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhH
Confidence 057899999998 68999999999999984 456
Q ss_pred cHHHHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHHHHHHHH
Q 003349 499 IPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAA 548 (828)
Q Consensus 499 ~~~~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~l~~~a~ 548 (828)
.+......+..+..+.+++++++.+++ ...+..|+|.|+..++.++-++.
T Consensus 459 ~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleam 509 (564)
T KOG0745|consen 459 GKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAM 509 (564)
T ss_pred HHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhc
Confidence 666667777888889999999999998 56678999999999999885444
No 79
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.68 E-value=7.1e-16 Score=167.96 Aligned_cols=188 Identities=25% Similarity=0.341 Sum_probs=134.5
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccccccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGS 392 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~ 392 (828)
.+++||+++++.+..++......+ ....+++|+||||||||++|+++|+.++.++..+..+....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~-------------- 68 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ-EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK-------------- 68 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--------------
Confidence 468999999999988886544432 33457899999999999999999999987765554332111
Q ss_pred CcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccC---CeeecCCCcEEEEecCCCCCC
Q 003349 393 MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYL---NVPFDLSKVIFVATANRAQPI 469 (828)
Q Consensus 393 ~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~---~~~~~~~~viiI~TtN~~~~l 469 (828)
.+.+...+.... ...++||||++.+.+.. ++.|+..|+........+... ........+.+|++||.+..+
T Consensus 69 -~~~l~~~l~~~~-~~~vl~iDEi~~l~~~~----~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l 142 (305)
T TIGR00635 69 -PGDLAAILTNLE-EGDVLFIDEIHRLSPAV----EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGML 142 (305)
T ss_pred -chhHHHHHHhcc-cCCEEEEehHhhhCHHH----HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcccc
Confidence 122333333322 35699999999998765 677888887554322222110 112344567899999999999
Q ss_pred CccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 470 PPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 470 ~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
++++++||. ++.|++|+.+++.++++.... ..++.++++++.++++.+.+..
T Consensus 143 ~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~----------~~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 143 TSPLRDRFGIILRLEFYTVEELAEIVSRSAG----------LLNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred CHHHHhhcceEEEeCCCCHHHHHHHHHHHHH----------HhCCCcCHHHHHHHHHHhCCCc
Confidence 999999996 689999999999999987642 1246789999999998765533
No 80
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.67 E-value=9.8e-16 Score=168.22 Aligned_cols=200 Identities=25% Similarity=0.305 Sum_probs=139.7
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIG 391 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg 391 (828)
..+++|+++.++.+..++...... .....+++|+||||||||++|+++|+.++..+..++......
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------------- 89 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------------- 89 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-------------
Confidence 356899999999998887654332 234568999999999999999999999988776554332211
Q ss_pred cCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCccccccccccc---CCeeecCCCcEEEEecCCCCC
Q 003349 392 SMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY---LNVPFDLSKVIFVATANRAQP 468 (828)
Q Consensus 392 ~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~---~~~~~~~~~viiI~TtN~~~~ 468 (828)
.+.+...+.... ...|+|||||+.+.... .+.|+..|+........+.. ........++.+|++||+...
T Consensus 90 --~~~l~~~l~~l~-~~~vl~IDEi~~l~~~~----~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~ 162 (328)
T PRK00080 90 --PGDLAAILTNLE-EGDVLFIDEIHRLSPVV----EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGL 162 (328)
T ss_pred --hHHHHHHHHhcc-cCCEEEEecHhhcchHH----HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCccc
Confidence 123333333322 35699999999998654 66777777643221111111 011223456789999999999
Q ss_pred CCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 469 IPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 469 l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
++++|++||. ++.|++|+.+++.+|++.... ..++.++++++.+++..+.+.. |.+.+.+..+.
T Consensus 163 l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~----------~~~~~~~~~~~~~ia~~~~G~p--R~a~~~l~~~~ 227 (328)
T PRK00080 163 LTSPLRDRFGIVQRLEFYTVEELEKIVKRSAR----------ILGVEIDEEGALEIARRSRGTP--RIANRLLRRVR 227 (328)
T ss_pred CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHH----------HcCCCcCHHHHHHHHHHcCCCc--hHHHHHHHHHH
Confidence 9999999996 699999999999999987743 2347899999999998776533 44445554443
No 81
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=5.8e-16 Score=172.70 Aligned_cols=197 Identities=19% Similarity=0.182 Sum_probs=132.3
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCcCchhhhc-cCccc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADIR-GHRRT 388 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~~~~~~l~-g~~~~ 388 (828)
..+++||+.+++.+...+.... .++.+||+|||||||||+|+.+|+.++.... ...|....+...+. +....
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD 91 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcc
Confidence 3468899999999888776332 2345899999999999999999999865321 11111111000000 00000
Q ss_pred c--ccc-C---cch---HHHHHHhcC--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 389 Y--IGS-M---PGR---LIDGLKRVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 389 ~--vg~-~---~g~---l~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
+ +.. . -.. +.+.+...+ ....|+||||+|.+.... +++||..|++. ..++
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A----~NALLKtLEEP---------------p~~v 152 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQS----FNALLKTLEEP---------------PAHI 152 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHH----HHHHHHHhhcC---------------CCce
Confidence 0 000 0 011 222222222 223499999999998766 99999999752 3467
Q ss_pred EEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 458 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
+||++||.++.+++++++||..+.|.+++.++..+.++..+. ..++.++++++..|+.... .++|..-
T Consensus 153 iFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~----------~Egi~~e~eAL~~Ia~~S~--Gd~RdAL 220 (484)
T PRK14956 153 VFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCK----------IENVQYDQEGLFWIAKKGD--GSVRDML 220 (484)
T ss_pred EEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--ChHHHHH
Confidence 899999999999999999999999999999998888877642 2347899999999997554 3566665
Q ss_pred HHHHHHH
Q 003349 538 RNLAALA 544 (828)
Q Consensus 538 ~~i~~l~ 544 (828)
..+++++
T Consensus 221 ~lLeq~i 227 (484)
T PRK14956 221 SFMEQAI 227 (484)
T ss_pred HHHHHHH
Confidence 6665544
No 82
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.66 E-value=4.5e-16 Score=159.54 Aligned_cols=174 Identities=25% Similarity=0.282 Sum_probs=124.7
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCe----EEE--ecCCcCchhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF----IRI--SLGGVKDEADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~----~~i--~~~~~~~~~~l~g~~ 386 (828)
.++.||+.+++.+...+.. ...+++|||||||||||+.|+++|++++.+- ..+ +.+.. +|..
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde------rGis 103 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE------RGIS 103 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc------cccc
Confidence 4578999999999887764 3457899999999999999999999986521 111 22221 1110
Q ss_pred ccccccC---cchHHHHHHhc--CCCC--cEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEE
Q 003349 387 RTYIGSM---PGRLIDGLKRV--GVCN--PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 459 (828)
Q Consensus 387 ~~~vg~~---~g~l~~~~~~~--~~~~--~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vii 459 (828)
.+... ..++....... ...+ .|++|||.|.+..+. +++|...||.. ...+.|
T Consensus 104 --vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsda----q~aLrr~mE~~---------------s~~trF 162 (346)
T KOG0989|consen 104 --VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDA----QAALRRTMEDF---------------SRTTRF 162 (346)
T ss_pred --chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHH----HHHHHHHHhcc---------------ccceEE
Confidence 01110 01111111100 0111 299999999998877 99999999842 346789
Q ss_pred EEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 460 VATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 460 I~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
|+-||..+.+++++.+|+.-+.|+++..+.....++... .++++.+++++++.|+....+
T Consensus 163 iLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia----------~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 163 ILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIA----------SKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred EEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHH----------HHhCCCCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999988887777653 245689999999999986544
No 83
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.66 E-value=2e-15 Score=160.08 Aligned_cols=151 Identities=20% Similarity=0.223 Sum_probs=111.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccc---------------------cCcchH
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIG---------------------SMPGRL 397 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg---------------------~~~g~l 397 (828)
.+.++||.||||||||++|+++|+.++.++..++|+...+.+++.|....+.. ..++.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 35678999999999999999999999999999999887777777664322110 113344
Q ss_pred HHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeee-cCCCcEEEEecCCCC-----CCCc
Q 003349 398 IDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF-DLSKVIFVATANRAQ-----PIPP 471 (828)
Q Consensus 398 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~-~~~~viiI~TtN~~~-----~l~~ 471 (828)
..++.. +.+++||||+++.++. ++.|+++|++++.........+..+ -..++.+|+|+|+.. .+++
T Consensus 100 ~~A~~~----g~~lllDEi~r~~~~~----q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 100 TLAVRE----GFTLVYDEFTRSKPET----NNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred HHHHHc----CCEEEEcchhhCCHHH----HHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 444432 4599999999999887 9999999986542211111101111 234678999999863 6799
Q ss_pred cccCceEEEEcCCCCHHHHHHHHHHh
Q 003349 472 PLLDRMEVIELPGYTPEEKLRIAMRH 497 (828)
Q Consensus 472 aLl~R~~~i~~~~~~~ee~~~Il~~~ 497 (828)
+|++||..+.++.|+.++..+|++.+
T Consensus 172 aL~~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 172 ALLDRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred HHHhhcEEEECCCCCHHHHHHHHHHh
Confidence 99999999999999999999999876
No 84
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1.9e-15 Score=174.07 Aligned_cols=197 Identities=20% Similarity=0.202 Sum_probs=131.5
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCcCchhhhc-cCccc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADIR-GHRRT 388 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~~~~~~l~-g~~~~ 388 (828)
.++++||+.+++.|..++... ...+.+||+||+||||||+++.+|+.++.... ...|+...+...+. |....
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 356899999999998887532 22345799999999999999999999865321 01111000000000 00000
Q ss_pred ccc--c----CcchHHHHHHhc---C--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 389 YIG--S----MPGRLIDGLKRV---G--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 389 ~vg--~----~~g~l~~~~~~~---~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
++- . .-..+++.+... + ....|+||||+|++.... +|.||+.|++. ..++
T Consensus 90 viEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A----~NALLKtLEEP---------------P~~v 150 (830)
T PRK07003 90 YVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHA----FNAMLKTLEEP---------------PPHV 150 (830)
T ss_pred EEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHH----HHHHHHHHHhc---------------CCCe
Confidence 100 0 011233333321 1 123499999999998765 89999999853 3467
Q ss_pred EEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 458 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
.||++||..+.|.+.++|||..|.|..++.++..+.++..+. .+++.++++++..|++...+ .+|...
T Consensus 151 ~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~----------~EgI~id~eAL~lIA~~A~G--smRdAL 218 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILG----------EERIAFEPQALRLLARAAQG--SMRDAL 218 (830)
T ss_pred EEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CHHHHH
Confidence 899999999999999999999999999999999988887642 23577899999988876544 345544
Q ss_pred HHHHHHH
Q 003349 538 RNLAALA 544 (828)
Q Consensus 538 ~~i~~l~ 544 (828)
..+.+.+
T Consensus 219 sLLdQAi 225 (830)
T PRK07003 219 SLTDQAI 225 (830)
T ss_pred HHHHHHH
Confidence 4444433
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=99.63 E-value=2.4e-15 Score=164.39 Aligned_cols=179 Identities=20% Similarity=0.227 Sum_probs=123.6
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCC-----eEEEecCCcCchhhhccCccc
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK-----FIRISLGGVKDEADIRGHRRT 388 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~-----~~~i~~~~~~~~~~l~g~~~~ 388 (828)
+++|++++++.+..++.. ...++++|+||||||||++|+++|+.+..+ +..++.+.......+
T Consensus 14 ~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~v------ 81 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVV------ 81 (319)
T ss_pred HhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHH------
Confidence 578999999988776542 234579999999999999999999987322 222322211110000
Q ss_pred ccccCcchHHHHHHhc-----CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEec
Q 003349 389 YIGSMPGRLIDGLKRV-----GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA 463 (828)
Q Consensus 389 ~vg~~~g~l~~~~~~~-----~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt 463 (828)
......+... .....|++|||+|.+.... +++|+..|+.. ...+.||+++
T Consensus 82 ------r~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a----q~aL~~~lE~~---------------~~~t~~il~~ 136 (319)
T PLN03025 82 ------RNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA----QQALRRTMEIY---------------SNTTRFALAC 136 (319)
T ss_pred ------HHHHHHHHhccccCCCCCeEEEEEechhhcCHHH----HHHHHHHHhcc---------------cCCceEEEEe
Confidence 0111111111 1124599999999998765 89999888631 1235688899
Q ss_pred CCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHH
Q 003349 464 NRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLA 541 (828)
Q Consensus 464 N~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~ 541 (828)
|....+.+++++|+.++.|++++.+++..+++..+. ++++.++++++.+++..+.+ ..|.+-..++
T Consensus 137 n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~----------~egi~i~~~~l~~i~~~~~g--DlR~aln~Lq 202 (319)
T PLN03025 137 NTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVE----------AEKVPYVPEGLEAIIFTADG--DMRQALNNLQ 202 (319)
T ss_pred CCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CHHHHHHHHH
Confidence 999999999999999999999999999988887642 23578999999999987654 3444444443
No 86
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=3.1e-15 Score=169.77 Aligned_cols=196 Identities=22% Similarity=0.309 Sum_probs=127.1
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE--EecC-----------CcCc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLG-----------GVKD 378 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~--i~~~-----------~~~~ 378 (828)
.++++||+.+++.+...+... ..++.+||+|||||||||+|+++|+.++..... ..|. ...+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 356899999988887766532 234468999999999999999999998642100 0000 0000
Q ss_pred hhhhccCcccccccCcchHHHHHHhcC--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 379 EADIRGHRRTYIGSMPGRLIDGLKRVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
...+.......+... ..+.+.....+ ....|+||||+|.+.... ++.|+..|+.. ..+
T Consensus 88 v~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a----~~~LLk~LE~p---------------~~~ 147 (472)
T PRK14962 88 VIELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEA----FNALLKTLEEP---------------PSH 147 (472)
T ss_pred cEEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHH----HHHHHHHHHhC---------------CCc
Confidence 000100000000000 01222222222 123499999999997654 78899888742 234
Q ss_pred cEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 457 VIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
++||++||.+..+++++++||.++.|.+++.++...+++..+. ..++.++++++.+|+.... .++|.+
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~----------~egi~i~~eal~~Ia~~s~--GdlR~a 215 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAE----------AEGIEIDREALSFIAKRAS--GGLRDA 215 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHhC--CCHHHH
Confidence 6777777777899999999999999999999999888887642 2346899999999998654 456666
Q ss_pred HHHHHHHH
Q 003349 537 ERNLAALA 544 (828)
Q Consensus 537 ~~~i~~l~ 544 (828)
-..++.++
T Consensus 216 ln~Le~l~ 223 (472)
T PRK14962 216 LTMLEQVW 223 (472)
T ss_pred HHHHHHHH
Confidence 56665544
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.8e-15 Score=172.40 Aligned_cols=194 Identities=21% Similarity=0.226 Sum_probs=128.3
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCe----EEE---ecCCcCchhhhc-
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF----IRI---SLGGVKDEADIR- 383 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~----~~i---~~~~~~~~~~l~- 383 (828)
.++++||+.+++.+.+.+...++ .+.+||+||+||||||+|+.+|+.++... ..+ .|+...+...+.
T Consensus 15 FddVIGQe~vv~~L~~al~~gRL-----pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRL-----HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCC-----ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 35689999999999988864432 34579999999999999999999986521 000 011100000000
Q ss_pred cCcccccc---c---CcchHHHHHHh---cC--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeee
Q 003349 384 GHRRTYIG---S---MPGRLIDGLKR---VG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF 452 (828)
Q Consensus 384 g~~~~~vg---~---~~g~l~~~~~~---~~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~ 452 (828)
|....++. . .-..+++.+.. .+ ....|+||||+|.++... +|+||+.|++.
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~A----aNALLKTLEEP-------------- 151 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHA----FNAMLKTLEEP-------------- 151 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHH----HHHHHHhhccC--------------
Confidence 00000100 0 01223333322 22 123499999999998765 89999999853
Q ss_pred cCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhc
Q 003349 453 DLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 532 (828)
Q Consensus 453 ~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g 532 (828)
..+++||++||.+..+.+.++|||..+.|..++.++..+.+++.+. ..++.++++++..|+....+ .
T Consensus 152 -P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~----------~Egi~~d~eAL~~IA~~A~G--s 218 (700)
T PRK12323 152 -PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG----------EEGIAHEVNALRLLAQAAQG--S 218 (700)
T ss_pred -CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--C
Confidence 3467899999999999999999999999999999999888877652 12467788888887765433 3
Q ss_pred hHHHHHHHH
Q 003349 533 VRNLERNLA 541 (828)
Q Consensus 533 ~R~l~~~i~ 541 (828)
.|...+.+.
T Consensus 219 ~RdALsLLd 227 (700)
T PRK12323 219 MRDALSLTD 227 (700)
T ss_pred HHHHHHHHH
Confidence 344333333
No 88
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=4.9e-15 Score=169.24 Aligned_cols=193 Identities=19% Similarity=0.155 Sum_probs=131.2
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE-E-EecCC-----------cCc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-R-ISLGG-----------VKD 378 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~-~-i~~~~-----------~~~ 378 (828)
..+++||+.+++.+...+... ...+.+||+||||||||++|+++|+.++.... . ..|+. ..+
T Consensus 14 FddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 356899999999998877632 23457899999999999999999999865221 0 00110 001
Q ss_pred hhhhccCcccccccCcchHHHHHHh---cC--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec
Q 003349 379 EADIRGHRRTYIGSMPGRLIDGLKR---VG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~~~~---~~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
...+.+..+. + -..+++.+.. .+ ....|+||||+|.++... +++|++.|++.
T Consensus 89 viEIDAAs~~--~--VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A----~NALLKtLEEP--------------- 145 (702)
T PRK14960 89 LIEIDAASRT--K--VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHS----FNALLKTLEEP--------------- 145 (702)
T ss_pred eEEecccccC--C--HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHH----HHHHHHHHhcC---------------
Confidence 0011110000 0 1223333322 22 123499999999998765 89999999853
Q ss_pred CCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 454 LSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
..++.||++||.+..+++.+++||..+.|.+++.++..+.++..+. +.++.++++++..|+.... .++
T Consensus 146 P~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~----------kEgI~id~eAL~~IA~~S~--GdL 213 (702)
T PRK14960 146 PEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILE----------KEQIAADQDAIWQIAESAQ--GSL 213 (702)
T ss_pred CCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CCH
Confidence 2356788888889999999999999999999999999988887752 2346889999998887543 355
Q ss_pred HHHHHHHHHHH
Q 003349 534 RNLERNLAALA 544 (828)
Q Consensus 534 R~l~~~i~~l~ 544 (828)
|...+.+..++
T Consensus 214 RdALnLLDQaI 224 (702)
T PRK14960 214 RDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHH
Confidence 66655555544
No 89
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=8.6e-15 Score=171.86 Aligned_cols=192 Identities=22% Similarity=0.230 Sum_probs=127.5
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE-E-EecCCcCc-----------
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-R-ISLGGVKD----------- 378 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~-~-i~~~~~~~----------- 378 (828)
..+++||+.+++.+..++...+ -++.+||+||||||||++|+++|+.++.... . ..|.....
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 3468999999999888775432 2345699999999999999999999865311 0 01110000
Q ss_pred hhhhccCcccccccCcchHHHHHHhcC--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 379 EADIRGHRRTYIGSMPGRLIDGLKRVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
...+.+.....+.. -..+...+...+ ....|+||||+|++.... +++||+.|++. ..+
T Consensus 90 viEidAas~~kVDd-IReLie~v~~~P~~gk~KViIIDEAh~LT~eA----qNALLKtLEEP---------------P~~ 149 (944)
T PRK14949 90 LIEVDAASRTKVDD-TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSS----FNALLKTLEEP---------------PEH 149 (944)
T ss_pred EEEeccccccCHHH-HHHHHHHHHhhhhcCCcEEEEEechHhcCHHH----HHHHHHHHhcc---------------CCC
Confidence 00000000000000 012223333222 123499999999998766 99999999853 345
Q ss_pred cEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 457 VIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
++||++||.+..+.+.+++||..+.|.+++.++..+.+++.+.. .++.++++++..|+....| .+|..
T Consensus 150 vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----------EgI~~edeAL~lIA~~S~G--d~R~A 217 (944)
T PRK14949 150 VKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----------EQLPFEAEALTLLAKAANG--SMRDA 217 (944)
T ss_pred eEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHcCC--CHHHH
Confidence 67888888888999999999999999999999999888876531 2467899999988875433 34444
Q ss_pred HHHH
Q 003349 537 ERNL 540 (828)
Q Consensus 537 ~~~i 540 (828)
...+
T Consensus 218 LnLL 221 (944)
T PRK14949 218 LSLT 221 (944)
T ss_pred HHHH
Confidence 3433
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=6.3e-15 Score=169.04 Aligned_cols=193 Identities=20% Similarity=0.207 Sum_probs=132.0
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCc-----------Cc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGV-----------KD 378 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~-----------~~ 378 (828)
.++++||+.+++.+...+.... -++.+||+||||||||++|+++|+.++.... .-.|+.- .+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 3568999999999998886432 2345899999999999999999999864311 0011110 00
Q ss_pred hhhhccCcccccccCcchHHHHH---HhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec
Q 003349 379 EADIRGHRRTYIGSMPGRLIDGL---KRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~~---~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
...+.+.....+ ..+++.+ ...+. ...|+||||+|.+++.. +++|+..|++.
T Consensus 90 ~~eidaas~~~v----~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a----~naLLk~LEep--------------- 146 (509)
T PRK14958 90 LFEVDAASRTKV----EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHS----FNALLKTLEEP--------------- 146 (509)
T ss_pred EEEEcccccCCH----HHHHHHHHHHhhccccCCcEEEEEEChHhcCHHH----HHHHHHHHhcc---------------
Confidence 111111100111 1233332 22222 23499999999998766 89999999853
Q ss_pred CCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 454 LSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
..++.||++|+.+..+.+.+++||..++|.+++.++..+.++..+. ..++.++++++..++.... .+.
T Consensus 147 p~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~----------~egi~~~~~al~~ia~~s~--Gsl 214 (509)
T PRK14958 147 PSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLK----------EENVEFENAALDLLARAAN--GSV 214 (509)
T ss_pred CCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CcH
Confidence 3456788888888999999999999999999999998887777652 2346789999999887654 356
Q ss_pred HHHHHHHHHHH
Q 003349 534 RNLERNLAALA 544 (828)
Q Consensus 534 R~l~~~i~~l~ 544 (828)
|...+.++.++
T Consensus 215 R~al~lLdq~i 225 (509)
T PRK14958 215 RDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 91
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=99.59 E-value=2.8e-14 Score=145.87 Aligned_cols=140 Identities=26% Similarity=0.361 Sum_probs=94.5
Q ss_pred CCccccccceeEEEEEEeccCccCCCCceEEEEEEEEeeEEEEeee---cccCCeEEEEEEEeccchhhhhccCCChHHH
Q 003349 40 QEVIHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQEL---STRGTYYTARISSLEMTKIEMEQVEQDPDFI 116 (828)
Q Consensus 40 ~~~~~l~~vGt~a~I~~~~~~~~~~dG~~~~~I~~~G~~RfrI~~~---~~~~~y~~a~Ve~l~~~~~~~~~~~~~~~~~ 116 (828)
+..+++|+|||+|+|+++... +|| ++.|+++|.+||+|.++ ...+||++|+|+.+++. .. ....
T Consensus 57 ~~~~~~~~~G~~~~I~~~~~~---~dg--~~~v~~~g~~R~ki~~~~~~~~~~~~~~a~v~~l~d~-----~~---~~~~ 123 (205)
T PF02190_consen 57 PSIDDLYSVGTLARIIRVEEL---PDG--TYKVLVQGLQRFKILKINNETQEDPYLVAEVEPLEDV-----EP---PESD 123 (205)
T ss_dssp S-GGGB-SEEEEEEEEEEEES---TTS---EEEEEEEEEEEEEEEEEE--ECSSCEEEEEEEE-------------GCGH
T ss_pred CcccccccceEEEEEEEEEec---CCC--CEEEEEEEEEEEEEEEEecccccCCceEEEEEEeccc-----Cc---cchh
Confidence 567889999999999999988 899 99999999999999999 55899999999999741 01 1112
Q ss_pred HHHHHHHHHHHHHHHHhh---h-c-cC-chhhHHHhhccCChHHHHHHHHHcCCCCHHHHHHHhhccCHHHHHHHHHHHH
Q 003349 117 ALSRQFKATAMELISVLE---Q-K-QK-TGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELV 190 (828)
Q Consensus 117 ~l~~~l~~~~~~~~~~~~---~-~-~~-~~~~~~~~~~~~d~~~la~~la~~lpl~~~~kq~LLe~~d~~~Rl~~l~~~l 190 (828)
.+...+..++.++..... . . .. ...........+++.+++|.+|+.+|++.++||+||++.|+.+|++.++++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ek~~lL~~~~~~~Rl~~l~~~L 203 (205)
T PF02190_consen 124 ELDEEIKALLRELIKKIKEAYENLKELLPWDLLLKINNPDNPPELADFVASLLPLSPEEKQELLETDDLKERLKLLIELL 203 (205)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHCCC-CHHHHHHTTTHHHHHHHHHHHHHHS---HHHHHHHHC--SHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 222333333333332221 0 0 11 1223333445567888999999999999999999999999999999999999
Q ss_pred HH
Q 003349 191 DR 192 (828)
Q Consensus 191 ~~ 192 (828)
++
T Consensus 204 ~~ 205 (205)
T PF02190_consen 204 KK 205 (205)
T ss_dssp H-
T ss_pred cC
Confidence 74
No 92
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.59 E-value=1.4e-15 Score=149.83 Aligned_cols=118 Identities=34% Similarity=0.508 Sum_probs=83.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCC----CeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGR----KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~----~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
..+++|+||+|||||.+|+++|+.+.. ++..++|+.+....+.........|..++.+... ..+||||||
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~------~~gVVllDE 76 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAE------EGGVVLLDE 76 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHH------HHTEEEEET
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeecc------chhhhhhHH
Confidence 357999999999999999999999984 8999999987762221111112233333322211 123999999
Q ss_pred ccccCCCCCC-------ChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC
Q 003349 416 IDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ 467 (828)
Q Consensus 416 id~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~ 467 (828)
|||+++...+ +.++.||++||++ .+.+.+ ++.+++++++||+|+|...
T Consensus 77 idKa~~~~~~~~~v~~~~V~~~LL~~le~g---~~~d~~-g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 77 IDKAHPSNSGGADVSGEGVQNSLLQLLEGG---TLTDSY-GRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GGGCSHTTTTCSHHHHHHHHHHHHHHHHHS---EEEETT-CCEEEGTTEEEEEEESSST
T ss_pred HhhccccccccchhhHHHHHHHHHHHhccc---ceeccc-ceEEEeCCceEEEeccccc
Confidence 9999982110 1289999999965 344544 5899999999999999875
No 93
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.58 E-value=6.3e-16 Score=141.07 Aligned_cols=124 Identities=31% Similarity=0.463 Sum_probs=79.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGS 421 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~ 421 (828)
|+||.|+||+|||++|+++|+.++..+.+|.++....++++.|..- .....+.. .|...+....|+++|||+++.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v--~~~~~~~f--~~~~GPif~~ill~DEiNrapp 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPV--YDQETGEF--EFRPGPIFTNILLADEINRAPP 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEE--EETTTTEE--EEEE-TT-SSEEEEETGGGS-H
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeee--eccCCCee--EeecChhhhceeeecccccCCH
Confidence 5899999999999999999999999999999987788999988731 11111110 1233444456999999999999
Q ss_pred CCCCChHHHHHHhcCcccccccccccCCeeecCC-CcEEEEecCCCC-----CCCccccCceE
Q 003349 422 DVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS-KVIFVATANRAQ-----PIPPPLLDRME 478 (828)
Q Consensus 422 ~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~-~viiI~TtN~~~-----~l~~aLl~R~~ 478 (828)
+. |++||++|.+++... .+.++.+. .++||+|.|+.+ .++++++|||-
T Consensus 77 kt----QsAlLeam~Er~Vt~-----~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 77 KT----QSALLEAMEERQVTI-----DGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp HH----HHHHHHHHHHSEEEE-----TTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred HH----HHHHHHHHHcCeEEe-----CCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 88 999999999876543 23344444 478999999976 89999999994
No 94
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=2.2e-14 Score=166.54 Aligned_cols=192 Identities=21% Similarity=0.244 Sum_probs=127.7
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCcC-----------c
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVK-----------D 378 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~~-----------~ 378 (828)
..+++||+.+++.+...+.... -.+.+||+||+||||||+|+.+|+.++.... .-.|+.-. +
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D 89 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVD 89 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCC
Confidence 4568999999999888776432 2345799999999999999999999865321 00111100 0
Q ss_pred hhhhccCcccccccCcchHHHHHHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 379 EADIRGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
...+.+.....+... ..+.+.+...+. ...|+||||+|+++... +++||..|++. ..+
T Consensus 90 ~ieidaas~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a----~NALLKtLEEP---------------p~~ 149 (647)
T PRK07994 90 LIEIDAASRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHS----FNALLKTLEEP---------------PEH 149 (647)
T ss_pred ceeecccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHH----HHHHHHHHHcC---------------CCC
Confidence 001111100000000 122233332222 23499999999998766 99999999853 346
Q ss_pred cEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 457 VIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
+.||++|+.+..+.+.+++||..|.|.+++.++....++..+. ..++.++++++..|+....+ .+|..
T Consensus 150 v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~----------~e~i~~e~~aL~~Ia~~s~G--s~R~A 217 (647)
T PRK07994 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQ----------AEQIPFEPRALQLLARAADG--SMRDA 217 (647)
T ss_pred eEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CHHHH
Confidence 7888888889999999999999999999999999988887652 12467888998888875443 34443
Q ss_pred HHHH
Q 003349 537 ERNL 540 (828)
Q Consensus 537 ~~~i 540 (828)
...+
T Consensus 218 l~ll 221 (647)
T PRK07994 218 LSLT 221 (647)
T ss_pred HHHH
Confidence 3333
No 95
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.9e-14 Score=158.41 Aligned_cols=193 Identities=21% Similarity=0.195 Sum_probs=127.1
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE--ecCCc-----------Cc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI--SLGGV-----------KD 378 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i--~~~~~-----------~~ 378 (828)
.++++||+.+++.+...+... .-++.++|+|||||||||+|+++|+.+....... .|... .+
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d 89 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLD 89 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 356899999999988877532 2234579999999999999999999886321100 01000 00
Q ss_pred hhhhccCcccccccCcchHHHH---HHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec
Q 003349 379 EADIRGHRRTYIGSMPGRLIDG---LKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~---~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
...+.+.... ....+.+. +...+. ...|+||||+|++.... +++|+..+++.
T Consensus 90 ~~~~~~~~~~----~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a----~naLLk~lEe~--------------- 146 (363)
T PRK14961 90 LIEIDAASRT----KVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHS----FNALLKTLEEP--------------- 146 (363)
T ss_pred eEEecccccC----CHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHH----HHHHHHHHhcC---------------
Confidence 0000000000 01122222 222222 23499999999997654 78999998752
Q ss_pred CCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 454 LSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
..++.||++|+..+.+.+++++||..+.|++++.++..++++..+. ..+..++++++..++....+ .+
T Consensus 147 ~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~----------~~g~~i~~~al~~ia~~s~G--~~ 214 (363)
T PRK14961 147 PQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILI----------KESIDTDEYALKLIAYHAHG--SM 214 (363)
T ss_pred CCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CH
Confidence 2346778888888899999999999999999999999988887642 22467899999998875543 35
Q ss_pred HHHHHHHHHHH
Q 003349 534 RNLERNLAALA 544 (828)
Q Consensus 534 R~l~~~i~~l~ 544 (828)
|...+.++..+
T Consensus 215 R~al~~l~~~~ 225 (363)
T PRK14961 215 RDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.9e-14 Score=162.64 Aligned_cols=193 Identities=19% Similarity=0.203 Sum_probs=132.3
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE-E-ecCC-----------cCc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR-I-SLGG-----------VKD 378 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~-i-~~~~-----------~~~ 378 (828)
.++++||+.+++.+...+... ..++.+||+||||+||||+|+.+|+.++..... . .|+. ..+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 356899999999888766533 234579999999999999999999987532110 0 0000 000
Q ss_pred hhhhccCcccccccCcchHHHHH---HhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec
Q 003349 379 EADIRGHRRTYIGSMPGRLIDGL---KRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~~---~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
...+.+.. ..| -..+++.+ ...+. ...|++|||+|.++... +++|+..|++.
T Consensus 87 v~eidaas--~~~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A----~NaLLK~LEeP--------------- 143 (491)
T PRK14964 87 VIEIDAAS--NTS--VDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSA----FNALLKTLEEP--------------- 143 (491)
T ss_pred EEEEeccc--CCC--HHHHHHHHHHHHhccccCCceEEEEeChHhCCHHH----HHHHHHHHhCC---------------
Confidence 01111100 001 12233332 22222 23499999999998755 89999999853
Q ss_pred CCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 454 LSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
...+.||++|+....+.+.+++||..+.|.+++.++....+...+. +.++.++++++..|+.... .++
T Consensus 144 p~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~----------~Egi~i~~eAL~lIa~~s~--Gsl 211 (491)
T PRK14964 144 APHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAK----------KENIEHDEESLKLIAENSS--GSM 211 (491)
T ss_pred CCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CCH
Confidence 2456788888888899999999999999999999999988877642 2357899999999998664 356
Q ss_pred HHHHHHHHHHH
Q 003349 534 RNLERNLAALA 544 (828)
Q Consensus 534 R~l~~~i~~l~ 544 (828)
|...+.+++++
T Consensus 212 R~alslLdqli 222 (491)
T PRK14964 212 RNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHH
Confidence 76666666655
No 97
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=1.3e-14 Score=174.93 Aligned_cols=200 Identities=21% Similarity=0.283 Sum_probs=140.9
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchhhh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 382 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~~l 382 (828)
+.++|+++.++++.+.+... ...+++|+||||||||++++.+|+.+ +..++.++++.....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~--- 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAG--- 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhh---
Confidence 46899999999888766432 34578999999999999999999987 445566654443211
Q ss_pred ccCcccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCC---C--ChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVR---G--DPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~---~--~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.+|.|..+..+...+..+.. .+.|+||||+|.+.+... + +.++.|...|+. ..
T Consensus 253 ----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-----------------g~ 311 (731)
T TIGR02639 253 ----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-----------------GK 311 (731)
T ss_pred ----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-----------------CC
Confidence 14667777788888876543 345999999999976431 1 234556555542 24
Q ss_pred cEEEEecCCCC-----CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 457 VIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 457 viiI~TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
+.+|++||..+ ..+++|.+||..|.++.|+.++..+|++.... +....+ .+.++++++.+++....++.
T Consensus 312 i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~-~~e~~~-----~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 312 LRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE-KYEEFH-----HVKYSDEALEAAVELSARYI 385 (731)
T ss_pred eEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH-HHHhcc-----CcccCHHHHHHHHHhhhccc
Confidence 67888888643 67999999999999999999999999997643 222222 36799999999988655555
Q ss_pred chHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAA 548 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~ 548 (828)
+-|.+-..-..++.+|+
T Consensus 386 ~~r~~P~kai~lld~a~ 402 (731)
T TIGR02639 386 NDRFLPDKAIDVIDEAG 402 (731)
T ss_pred ccccCCHHHHHHHHHhh
Confidence 55554443334444443
No 98
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.56 E-value=6e-14 Score=149.65 Aligned_cols=148 Identities=23% Similarity=0.227 Sum_probs=113.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccc--cc-----cCcchHHHHHHhcCCCCcEEE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTY--IG-----SMPGRLIDGLKRVGVCNPVML 412 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~--vg-----~~~g~l~~~~~~~~~~~~vl~ 412 (828)
+.++||.||||||||++++.+|+.++.++++++++...+..++.|..... -| ..+|.+..+++ .+.+++
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~----~g~ill 139 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ----HNVALC 139 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh----CCeEEE
Confidence 45799999999999999999999999999999999998888888864321 11 12344444443 245899
Q ss_pred EecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec-CCCcEEEEecCCCC------------CCCccccCceE-
Q 003349 413 LDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD-LSKVIFVATANRAQ------------PIPPPLLDRME- 478 (828)
Q Consensus 413 iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~-~~~viiI~TtN~~~------------~l~~aLl~R~~- 478 (828)
+||+|.+.++. ++.|..+||.+..- .... .+..+. ..++.+|+|+|+.+ .+++++++||.
T Consensus 140 lDEin~a~p~~----~~~L~~lLE~~~~l-~i~~-~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i 213 (327)
T TIGR01650 140 FDEYDAGRPDV----MFVIQRVLEAGGKL-TLLD-QNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSI 213 (327)
T ss_pred echhhccCHHH----HHHHHHHhccCCeE-EECC-CceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheee
Confidence 99999998887 89999999852111 1111 244453 34789999999853 67999999997
Q ss_pred EEEcCCCCHHHHHHHHHHh
Q 003349 479 VIELPGYTPEEKLRIAMRH 497 (828)
Q Consensus 479 ~i~~~~~~~ee~~~Il~~~ 497 (828)
++.++.|+.++..+|+...
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred EeeCCCCCHHHHHHHHHhh
Confidence 4689999999999998765
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=3.1e-14 Score=165.14 Aligned_cols=197 Identities=21% Similarity=0.241 Sum_probs=130.7
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE----EE---ecCCcCchhhhc-
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI----RI---SLGGVKDEADIR- 383 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~----~i---~~~~~~~~~~l~- 383 (828)
.++++||+.+++.+...+.... ..+.+||+||+||||||+|+++|+.++.... .+ .|+.-.+...+.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS 89 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc
Confidence 3468899999999988876432 2345799999999999999999999864210 00 011100000000
Q ss_pred cCccccc---cc---CcchHHHHHHh---cCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeee
Q 003349 384 GHRRTYI---GS---MPGRLIDGLKR---VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF 452 (828)
Q Consensus 384 g~~~~~v---g~---~~g~l~~~~~~---~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~ 452 (828)
|....++ +. .-..+++.+.. .+. ...|++|||+|.++... +++|+..|++.
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a----~NaLLKtLEEP-------------- 151 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTA----FNAMLKTLEEP-------------- 151 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHH----HHHHHHhcccC--------------
Confidence 0000010 00 01123333332 222 23499999999998766 89999999853
Q ss_pred cCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhc
Q 003349 453 DLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 532 (828)
Q Consensus 453 ~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g 532 (828)
..++.||++|+.+..+.+.+++||..|.|..++.++..+.++..+. +.++.++++++..|+....+ +
T Consensus 152 -P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~----------~egi~ie~~AL~~La~~s~G--s 218 (618)
T PRK14951 152 -PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLA----------AENVPAEPQALRLLARAARG--S 218 (618)
T ss_pred -CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--C
Confidence 2456788888888889999999999999999999999988887642 23578899999999886543 4
Q ss_pred hHHHHHHHHHHH
Q 003349 533 VRNLERNLAALA 544 (828)
Q Consensus 533 ~R~l~~~i~~l~ 544 (828)
+|.+...+.+++
T Consensus 219 lR~al~lLdq~i 230 (618)
T PRK14951 219 MRDALSLTDQAI 230 (618)
T ss_pred HHHHHHHHHHHH
Confidence 566555555443
No 100
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=4.2e-14 Score=161.11 Aligned_cols=192 Identities=18% Similarity=0.220 Sum_probs=131.9
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE-----E-ecCC------c----
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR-----I-SLGG------V---- 376 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~-----i-~~~~------~---- 376 (828)
.+++||+.+++.+...+... ..++.+||+|||||||||+|+++|+.++..... + .|.. +
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 35789999999887766532 334679999999999999999999998653210 0 0110 0
Q ss_pred -CchhhhccCcccccccCcchHHHHHHhc---CC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCe
Q 003349 377 -KDEADIRGHRRTYIGSMPGRLIDGLKRV---GV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 450 (828)
Q Consensus 377 -~~~~~l~g~~~~~vg~~~g~l~~~~~~~---~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~ 450 (828)
.+...+....... -..+.+.+..+ +. ...|++|||++.+.... +++|+..|++.
T Consensus 96 h~Dv~eidaas~~~----vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a----~naLLk~LEep------------ 155 (507)
T PRK06645 96 HPDIIEIDAASKTS----VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGA----FNALLKTLEEP------------ 155 (507)
T ss_pred CCcEEEeeccCCCC----HHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHH----HHHHHHHHhhc------------
Confidence 0000010000011 12333333322 21 23499999999997654 89999988742
Q ss_pred eecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhh
Q 003349 451 PFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 530 (828)
Q Consensus 451 ~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~ 530 (828)
...++||++|+....+++++++|+..++|.+++.++...+++..+. ..++.++++++..|+..+.
T Consensus 156 ---p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~----------~egi~ie~eAL~~Ia~~s~-- 220 (507)
T PRK06645 156 ---PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITK----------QENLKTDIEALRIIAYKSE-- 220 (507)
T ss_pred ---CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--
Confidence 2456788888888899999999999999999999999999988753 2346789999999998654
Q ss_pred hchHHHHHHHHHHH
Q 003349 531 AGVRNLERNLAALA 544 (828)
Q Consensus 531 ~g~R~l~~~i~~l~ 544 (828)
.++|...+.++.++
T Consensus 221 GslR~al~~Ldkai 234 (507)
T PRK06645 221 GSARDAVSILDQAA 234 (507)
T ss_pred CCHHHHHHHHHHHH
Confidence 35677666666665
No 101
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.56 E-value=2.5e-14 Score=173.52 Aligned_cols=200 Identities=21% Similarity=0.259 Sum_probs=138.2
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC----------CCeEEEecCCcCchhhh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----------RKFIRISLGGVKDEADI 382 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~----------~~~~~i~~~~~~~~~~l 382 (828)
+.++|+++.++++.+.+.. ....+++|+||||||||++++.+|+.+. .+++.++++.+...
T Consensus 187 d~~iGr~~ei~~~i~~l~r------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag--- 257 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG--- 257 (852)
T ss_pred CcccCCHHHHHHHHHHHhc------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcc---
Confidence 5689999998888887643 2345788999999999999999999873 23444444432211
Q ss_pred ccCcccccccCcchHHHHHHhcC--CCCcEEEEecccccCCCCC----CChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVG--VCNPVMLLDEIDKTGSDVR----GDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~--~~~~vl~iDEid~l~~~~~----~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
..|.|..+..+.+.+.... ..+.|+||||++.+..... .|..+.|...|.. ..
T Consensus 258 ----~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-----------------G~ 316 (852)
T TIGR03345 258 ----ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-----------------GE 316 (852)
T ss_pred ----cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-----------------CC
Confidence 1466666677777776543 2356999999999986331 2233455555542 24
Q ss_pred cEEEEecCCCC-----CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 457 VIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 457 viiI~TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
+.+|+||+..+ ..++||.+||..|.+++|+.++..+|++.. .+.....| ++.++++++..++....++.
T Consensus 317 l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~-~~~~e~~~-----~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 317 LRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL-APVLEKHH-----GVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred eEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH-HHhhhhcC-----CCeeCHHHHHHHHHHccccc
Confidence 67888888643 689999999999999999999999998544 33322223 37899999999998666666
Q ss_pred chHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAA 548 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~ 548 (828)
.-|.|-..--.++.+|+
T Consensus 391 ~~r~LPDKAIdlldea~ 407 (852)
T TIGR03345 391 PGRQLPDKAVSLLDTAC 407 (852)
T ss_pred ccccCccHHHHHHHHHH
Confidence 66665443334444443
No 102
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=3.8e-14 Score=169.79 Aligned_cols=197 Identities=17% Similarity=0.143 Sum_probs=131.3
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE--EecCCcCchhhhc-c---C
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGGVKDEADIR-G---H 385 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~--i~~~~~~~~~~l~-g---~ 385 (828)
..+++||+.+++.|..++.... ..+.+||+||+|||||++|+.||+.++..... -.|+...+...+. | +
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 3468899999999988876332 23458999999999999999999999642110 0111100000000 0 0
Q ss_pred cc--cccccC---cchHHH---HHHhcC--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCC
Q 003349 386 RR--TYIGSM---PGRLID---GLKRVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 386 ~~--~~vg~~---~g~l~~---~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
.. .+-+.. -..+++ .+...+ ....|+||||+|+++... +|.||+.|++. ..
T Consensus 89 ~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a----~NaLLK~LEEp---------------P~ 149 (824)
T PRK07764 89 LDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQG----FNALLKIVEEP---------------PE 149 (824)
T ss_pred CcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHH----HHHHHHHHhCC---------------CC
Confidence 00 000100 012222 111111 233499999999998766 89999999853 24
Q ss_pred CcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 456 KVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 456 ~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
+++||++||..+.|.+.+++||.++.|..++.+++.+++...+. ++++.++++++..++....+ .+|.
T Consensus 150 ~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~----------~EGv~id~eal~lLa~~sgG--dlR~ 217 (824)
T PRK07764 150 HLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICA----------QEGVPVEPGVLPLVIRAGGG--SVRD 217 (824)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CHHH
Confidence 57888888888899999999999999999999999988877642 23467899999888875543 4566
Q ss_pred HHHHHHHHH
Q 003349 536 LERNLAALA 544 (828)
Q Consensus 536 l~~~i~~l~ 544 (828)
....|++++
T Consensus 218 Al~eLEKLi 226 (824)
T PRK07764 218 SLSVLDQLL 226 (824)
T ss_pred HHHHHHHHH
Confidence 666776665
No 103
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.5e-14 Score=144.80 Aligned_cols=135 Identities=24% Similarity=0.391 Sum_probs=96.3
Q ss_pred CCcEEEEecccccCCCCC-C--C-----hHHHHHHhcCcccccccccccCCeeecCCCcEEEEec----CCCCCCCcccc
Q 003349 407 CNPVMLLDEIDKTGSDVR-G--D-----PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA----NRAQPIPPPLL 474 (828)
Q Consensus 407 ~~~vl~iDEid~l~~~~~-~--~-----~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt----N~~~~l~~aLl 474 (828)
.++|+||||||++..... + | .|.-||.++++.. ....|. ++...+++||++. ..|++|-|.|.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGst---V~TKyG--~VkTdHILFIasGAFh~sKPSDLiPELQ 324 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGST---VSTKYG--PVKTDHILFIASGAFHVAKPSDLIPELQ 324 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCce---eecccc--ccccceEEEEecCceecCChhhcChhhc
Confidence 456999999999875431 1 2 3677899988643 223332 4456678999864 45789999999
Q ss_pred CceEE-EEcCCCCHHHHHHHHHH---hhcHHHHHhcCCCCcccccCHHHHHHHHH-Hhh-----hhhchHHHHHHHHHHH
Q 003349 475 DRMEV-IELPGYTPEEKLRIAMR---HLIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYT-----REAGVRNLERNLAALA 544 (828)
Q Consensus 475 ~R~~~-i~~~~~~~ee~~~Il~~---~l~~~~~~~~~~~~~~~~i~~~~l~~l~~-~~~-----~~~g~R~l~~~i~~l~ 544 (828)
.||.+ +++..++.++...|+.. .|.+++.....-....+.+++++++.|++ .|. .+.|+|.|.-.+++++
T Consensus 325 GRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL 404 (444)
T COG1220 325 GRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL 404 (444)
T ss_pred CCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 99984 99999999999998843 34343333333334568999999999997 222 3789999988888877
Q ss_pred HH
Q 003349 545 RA 546 (828)
Q Consensus 545 ~~ 546 (828)
..
T Consensus 405 ed 406 (444)
T COG1220 405 ED 406 (444)
T ss_pred HH
Confidence 43
No 104
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=4.7e-14 Score=161.58 Aligned_cols=195 Identities=19% Similarity=0.204 Sum_probs=128.7
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE--EecCCc-----------Cc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGGV-----------KD 378 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~--i~~~~~-----------~~ 378 (828)
.++++||+.+++.+...+... ...+.+||+||||||||++|+.+|+.+...... -.|+.- .+
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 346889999999988777532 223458999999999999999999988642110 001100 00
Q ss_pred hhhhccCcccccccCc-chHHHHHHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCC
Q 003349 379 EADIRGHRRTYIGSMP-GRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~-g~l~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
...+.+. ...|... ..+.+.+...+. ...|+||||+|++.... ++.|+..|++. ..
T Consensus 90 lieidaa--s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a----~naLLK~LEep---------------p~ 148 (546)
T PRK14957 90 LIEIDAA--SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQS----FNALLKTLEEP---------------PE 148 (546)
T ss_pred eEEeecc--cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHH----HHHHHHHHhcC---------------CC
Confidence 0000000 0111110 123333333222 23499999999998765 89999999853 23
Q ss_pred CcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 456 KVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 456 ~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
.+.||++|+....+.+.+++||.+++|.+++.++..+.++..+. +.++.++++++..++.... ..+|.
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~----------~egi~~e~~Al~~Ia~~s~--GdlR~ 216 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILA----------KENINSDEQSLEYIAYHAK--GSLRD 216 (546)
T ss_pred CceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CCHHH
Confidence 56777777778889989999999999999999998888877642 1246789999999887653 34566
Q ss_pred HHHHHHHHH
Q 003349 536 LERNLAALA 544 (828)
Q Consensus 536 l~~~i~~l~ 544 (828)
..+.++.++
T Consensus 217 alnlLek~i 225 (546)
T PRK14957 217 ALSLLDQAI 225 (546)
T ss_pred HHHHHHHHH
Confidence 556665544
No 105
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.55 E-value=3.5e-14 Score=147.70 Aligned_cols=158 Identities=20% Similarity=0.324 Sum_probs=109.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC-eEEEecCCcCchhhhccCcccccccCcchHHHHHHhcC------CCCcEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK-FIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVG------VCNPVM 411 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~-~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~------~~~~vl 411 (828)
.-+.++||||||||||+||+.|+.....+ +..+..+.... ....++..|..+. ....|+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a--------------~t~dvR~ife~aq~~~~l~krkTil 226 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA--------------KTNDVRDIFEQAQNEKSLTKRKTIL 226 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc--------------chHHHHHHHHHHHHHHhhhcceeEE
Confidence 44678899999999999999999987655 22333333211 1123334443332 124499
Q ss_pred EEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEE--ecCCCCCCCccccCceEEEEcCCCCHHH
Q 003349 412 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA--TANRAQPIPPPLLDRMEVIELPGYTPEE 489 (828)
Q Consensus 412 ~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~--TtN~~~~l~~aLl~R~~~i~~~~~~~ee 489 (828)
|||||+++.... |+.||..++. ..+++|+ |-|+...++.+|++||.+|.+..++.++
T Consensus 227 FiDEiHRFNksQ----QD~fLP~VE~-----------------G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~ 285 (554)
T KOG2028|consen 227 FIDEIHRFNKSQ----QDTFLPHVEN-----------------GDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNA 285 (554)
T ss_pred EeHHhhhhhhhh----hhcccceecc-----------------CceEEEecccCCCccchhHHHHhccceeEeccCCHHH
Confidence 999999998876 7778777763 2456666 3466679999999999999999999999
Q ss_pred HHHHHHHhhc---HHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 490 KLRIAMRHLI---PRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 490 ~~~Il~~~l~---~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
...|+.+.+. +......++.+....+++.++++++..+.++.
T Consensus 286 v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 286 VVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 9999988543 11111223444445689999999998776643
No 106
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.55 E-value=2.9e-15 Score=141.55 Aligned_cols=120 Identities=37% Similarity=0.551 Sum_probs=91.4
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCC--CcEEEEecccccC
Q 003349 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVC--NPVMLLDEIDKTG 420 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~--~~vl~iDEid~l~ 420 (828)
+||+||||||||++++.+|+.++.+++.++++...+ .+.+.....+...+..+... +.|+||||+|.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELIS---------SYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLF 71 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHT---------SSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccc---------ccccccccccccccccccccccceeeeeccchhcc
Confidence 689999999999999999999999999998776543 24555556677777765433 4699999999998
Q ss_pred CCC--CC-----ChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCcccc-CceE-EEEcC
Q 003349 421 SDV--RG-----DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLL-DRME-VIELP 483 (828)
Q Consensus 421 ~~~--~~-----~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl-~R~~-~i~~~ 483 (828)
+.. .. ...+.|+..|+..... .++++||+|||..+.++++++ +||+ .|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~------------~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 72 PKSQPSSSSFEQRLLNQLLSLLDNPSSK------------NSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp HHCSTSSSHHHHHHHHHHHHHHHTTTTT------------SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred cccccccccccccccceeeecccccccc------------cccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 764 11 1256677777643211 246899999999999999999 9998 57775
No 107
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=4.6e-14 Score=163.17 Aligned_cols=196 Identities=19% Similarity=0.192 Sum_probs=129.9
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE--EecCCc-------------
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGGV------------- 376 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~--i~~~~~------------- 376 (828)
.++++||+.+++.+..++... ..++.+||+||+||||||+|+++|+.++..... -.|+.-
T Consensus 12 f~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS 86 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence 356889999999998887632 223457999999999999999999988642110 011100
Q ss_pred CchhhhccCcccccccCcchHHHHHHhcC--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecC
Q 003349 377 KDEADIRGHRRTYIGSMPGRLIDGLKRVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 377 ~~~~~l~g~~~~~vg~~~g~l~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.+...+.+....-+... ..+.+.....+ ....|+||||+|.+.... +++|+..|++. .
T Consensus 87 ~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A----~NALLK~LEEp---------------p 146 (584)
T PRK14952 87 IDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAG----FNALLKIVEEP---------------P 146 (584)
T ss_pred ceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHH----HHHHHHHHhcC---------------C
Confidence 00000101000000000 01222222222 223499999999998765 99999999852 3
Q ss_pred CCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchH
Q 003349 455 SKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 534 (828)
Q Consensus 455 ~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R 534 (828)
.+++||++|+.++.+.+++++|+..+.|..++.++..+.+...+. +.++.++++++..++.... .+.|
T Consensus 147 ~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~----------~egi~i~~~al~~Ia~~s~--GdlR 214 (584)
T PRK14952 147 EHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICE----------QEGVVVDDAVYPLVIRAGG--GSPR 214 (584)
T ss_pred CCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CCHH
Confidence 467888888888999999999999999999999998888877642 2246789999988876443 3456
Q ss_pred HHHHHHHHHH
Q 003349 535 NLERNLAALA 544 (828)
Q Consensus 535 ~l~~~i~~l~ 544 (828)
...+.++.++
T Consensus 215 ~aln~Ldql~ 224 (584)
T PRK14952 215 DTLSVLDQLL 224 (584)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 108
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.54 E-value=6.9e-14 Score=158.19 Aligned_cols=183 Identities=22% Similarity=0.333 Sum_probs=126.4
Q ss_pred ccccchHHHHHH---HHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccc
Q 003349 313 SDHYGLVRVKQR---IIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTY 389 (828)
Q Consensus 313 ~~i~G~~~~~~~---l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~ 389 (828)
++++||+.++.. +...+.. ...++++|+||||||||++|+++|+.++.++..++..... ...+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~-~~~i------- 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG-VKDL------- 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-HHHH-------
Confidence 358899988665 6665532 2345799999999999999999999999998888755321 1111
Q ss_pred cccCcchHHHHHHhc--CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEec--CC
Q 003349 390 IGSMPGRLIDGLKRV--GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA--NR 465 (828)
Q Consensus 390 vg~~~g~l~~~~~~~--~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt--N~ 465 (828)
..+.+..... .....|+||||+|.+.... ++.|+..++.. .+++|++| |+
T Consensus 78 -----r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~----q~~LL~~le~~-----------------~iilI~att~n~ 131 (413)
T PRK13342 78 -----REVIEEARQRRSAGRRTILFIDEIHRFNKAQ----QDALLPHVEDG-----------------TITLIGATTENP 131 (413)
T ss_pred -----HHHHHHHHHhhhcCCceEEEEechhhhCHHH----HHHHHHHhhcC-----------------cEEEEEeCCCCh
Confidence 0111111111 1134599999999998765 78898888632 23555543 55
Q ss_pred CCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 466 AQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 466 ~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
...+++++++||.++.|++++.++...+++..+... ..++ +.+++++++.+++.+. ..+|.+.+.++.++
T Consensus 132 ~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~---~~~~----i~i~~~al~~l~~~s~--Gd~R~aln~Le~~~ 201 (413)
T PRK13342 132 SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDK---ERGL----VELDDEALDALARLAN--GDARRALNLLELAA 201 (413)
T ss_pred hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHh---hcCC----CCCCHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 568999999999999999999999999998875321 1111 3789999999887553 34566666666554
No 109
>PRK04195 replication factor C large subunit; Provisional
Probab=99.54 E-value=1.7e-13 Score=158.01 Aligned_cols=176 Identities=23% Similarity=0.305 Sum_probs=127.7
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccC
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM 393 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~ 393 (828)
+++|++++++.+..++..... ..+.+++||+||||||||++|+++|+.++.+++.++.+.......+. ..++
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~----~~i~-- 86 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIE----RVAG-- 86 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHH----HHHH--
Confidence 478999999999998865432 12367899999999999999999999999998888876643322111 0111
Q ss_pred cchHHHHHHhcC---CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCC
Q 003349 394 PGRLIDGLKRVG---VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIP 470 (828)
Q Consensus 394 ~g~l~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~ 470 (828)
....... ....+|+|||+|.+........+++|+.+++. .++.||+++|.+..++
T Consensus 87 -----~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-----------------~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 87 -----EAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-----------------AKQPIILTANDPYDPS 144 (482)
T ss_pred -----HhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc-----------------CCCCEEEeccCccccc
Confidence 0000000 12459999999999763322336778887762 1245778889988888
Q ss_pred c-cccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 471 P-PLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 471 ~-aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
+ .|++|+..|.|++|+.+++..+++..+. ..++.++++++..|+..+.+
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~----------~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICR----------KEGIECDDEALKEIAERSGG 194 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC
Confidence 7 8889999999999999999999887752 23467899999999986543
No 110
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=3.9e-14 Score=163.49 Aligned_cols=193 Identities=19% Similarity=0.198 Sum_probs=133.1
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE--EecCC-----------cCc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGG-----------VKD 378 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~--i~~~~-----------~~~ 378 (828)
..+++||+.+++.+...+... ..+..+||+||+|||||++|+++|+.++..... ..|+. ..+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 356899999999998887642 234568999999999999999999998653211 01110 000
Q ss_pred hhhhccCcccccccCcchHHHHHHhc---C--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec
Q 003349 379 EADIRGHRRTYIGSMPGRLIDGLKRV---G--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~~~~~---~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
...+..... .| ...+.+.+... + ....|+||||+|++.... ++.|++.|++.
T Consensus 90 vlEidaAs~--~g--Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A----~NALLKtLEEP--------------- 146 (709)
T PRK08691 90 LLEIDAASN--TG--IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSA----FNAMLKTLEEP--------------- 146 (709)
T ss_pred eEEEecccc--CC--HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHH----HHHHHHHHHhC---------------
Confidence 000100000 01 12343443322 1 123499999999987654 88999999842
Q ss_pred CCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 454 LSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
..++.||++||.+..+.+.+++||..|.|.+++.++...+++..+. +.++.++++++..|++... .++
T Consensus 147 p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~----------kEgi~id~eAL~~Ia~~A~--Gsl 214 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLD----------SEKIAYEPPALQLLGRAAA--GSM 214 (709)
T ss_pred CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHH----------HcCCCcCHHHHHHHHHHhC--CCH
Confidence 2356888899999999999999999999999999999988887642 2357889999999998654 456
Q ss_pred HHHHHHHHHHH
Q 003349 534 RNLERNLAALA 544 (828)
Q Consensus 534 R~l~~~i~~l~ 544 (828)
|.+.+.++.++
T Consensus 215 RdAlnLLDqai 225 (709)
T PRK08691 215 RDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHH
Confidence 77666666554
No 111
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.1e-13 Score=158.41 Aligned_cols=196 Identities=25% Similarity=0.291 Sum_probs=128.3
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE-EEecCCcCchhhhc-cCcccc-
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-RISLGGVKDEADIR-GHRRTY- 389 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~-~i~~~~~~~~~~l~-g~~~~~- 389 (828)
++++||+.+++.+..++... ..++.+||+|||||||||+|+++|+.+..... ...|....+...+. +....+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 46899999999998887643 23345699999999999999999998853110 00111000000000 000000
Q ss_pred -ccc----Ccch---HHHHHHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEE
Q 003349 390 -IGS----MPGR---LIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 459 (828)
Q Consensus 390 -vg~----~~g~---l~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vii 459 (828)
++. .-.. +.+.+...+. ...|+||||+|.+.... ++.|+..|+.. ..+++|
T Consensus 89 el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a----~naLLk~LEep---------------~~~t~~ 149 (504)
T PRK14963 89 EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSA----FNALLKTLEEP---------------PEHVIF 149 (504)
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHH----HHHHHHHHHhC---------------CCCEEE
Confidence 000 0011 2222222221 23499999999887544 88898888742 235678
Q ss_pred EEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHH
Q 003349 460 VATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERN 539 (828)
Q Consensus 460 I~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~ 539 (828)
|+++|.+..+.+.+.+||..+.|.+++.++....++..+. +.++.++++++..++....+ .+|.+.+.
T Consensus 150 Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~----------~egi~i~~~Al~~ia~~s~G--dlR~aln~ 217 (504)
T PRK14963 150 ILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLE----------AEGREAEPEALQLVARLADG--AMRDAESL 217 (504)
T ss_pred EEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CHHHHHHH
Confidence 8888988999999999999999999999999998888752 23467899999999986543 45666566
Q ss_pred HHHHH
Q 003349 540 LAALA 544 (828)
Q Consensus 540 i~~l~ 544 (828)
++.++
T Consensus 218 Lekl~ 222 (504)
T PRK14963 218 LERLL 222 (504)
T ss_pred HHHHH
Confidence 66554
No 112
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=99.53 E-value=8.1e-14 Score=154.13 Aligned_cols=157 Identities=24% Similarity=0.299 Sum_probs=133.3
Q ss_pred ceEEEEEEEEEcCcceEEEeeCC-ChH-HHHHHHHHHHHHHHhhhhhhhhhhccCCC-CCcccEEEEccCCCCCCCCchh
Q 003349 649 GEVQFVEATAMRGKGELHLTGQL-GDV-IKESAQIALTWVRARATDLQLVAEDGMNL-LQGRDIHIHFPAGAVPKDGPSA 725 (828)
Q Consensus 649 g~~~~ie~~~~~g~~~~~~~G~~-~~~-~~es~~~a~~~~~~~~~~l~~~~~~~~~~-~~~~dv~i~~~~~~~~~~g~sa 725 (828)
|.+..+.++++||.|++.+.|.+ .+. |+-|++.|-...-- -.|. +..+|+++.+...+.-++|||+
T Consensus 49 gv~~~~~vtv~pG~G~v~v~t~P~t~~d~~~SArvAa~~A~~-----------~~Gvd~ssyd~~i~v~a~~pVVGgPSa 117 (579)
T COG1750 49 GVPINISVTVTPGDGRVYVATFPYTQIDMQGSARVAAGVALR-----------LAGVDMSSYDVYIAVEADSPVVGGPSA 117 (579)
T ss_pred eeeeeeeeeecCCCceEEeecCCCchhccchhhHHHHHHHHH-----------hhCCCccceeEEEEEecCCCeecCccc
Confidence 67888888889999998888775 555 89999987443331 2355 8999999999888888999999
Q ss_pred HHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccChhhhccChh-hhhCCcEEEE
Q 003349 726 GVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPA-AVLASLEIIL 804 (828)
Q Consensus 726 ~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~~~~~~-~~~~~i~i~~ 804 (828)
++++++|+++++.+..++.+++|||.|..||.|.||||+.+|+.+|.+.|+|.++||.++.. ..++-+ ..+.+++++.
T Consensus 118 gg~mtva~~~~~~~~~~~~~v~mTG~I~PDgsigpVGGi~~K~~AA~~~g~kifLIP~Gq~~-~~d~~~Y~k~~gl~vie 196 (579)
T COG1750 118 GGYMTVAIYAALMGWSIRKDVMMTGMINPDGSIGPVGGILEKLEAAAKAGAKIFLIPVGQRI-VVDLVEYGKSLGLKVIE 196 (579)
T ss_pred chHhHHHHHHHHhCCCcccCeeeeeeecCCCccccccchHHHHHHHHhCCCeEEEeeccccc-cccHHHHHhhcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876 222111 0145899999
Q ss_pred cCCHHHHHHHHHc
Q 003349 805 AKRMEDVLEQAFE 817 (828)
Q Consensus 805 v~~l~e~~~~~~~ 817 (828)
|.++.|++.++.+
T Consensus 197 V~~~~~aiyy~tg 209 (579)
T COG1750 197 VGTLEDAAYYLTG 209 (579)
T ss_pred Eechhhhhhhhcc
Confidence 9999999998654
No 113
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.2e-14 Score=149.00 Aligned_cols=163 Identities=23% Similarity=0.291 Sum_probs=109.7
Q ss_pred ccchHHHHHHHHHHHHHhhh--CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccccccc
Q 003349 315 HYGLVRVKQRIIEYLAVRKL--KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGS 392 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~--~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~ 392 (828)
++=......+|......-.. ....+-.++|||||||||||++|+.||...|.++-.+..+++.. .|.
T Consensus 357 ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-----------lG~ 425 (630)
T KOG0742|consen 357 VILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-----------LGA 425 (630)
T ss_pred eecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-----------cch
Confidence 44445555665544322211 11234458999999999999999999999998887776555321 122
Q ss_pred C-cchHHHHHHhcCCCC--cEEEEecccccCCCCCC-----ChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC
Q 003349 393 M-PGRLIDGLKRVGVCN--PVMLLDEIDKTGSDVRG-----DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN 464 (828)
Q Consensus 393 ~-~g~l~~~~~~~~~~~--~vl~iDEid~l~~~~~~-----~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN 464 (828)
. ...+.+.|..+..++ -++||||.|.+.-++.. +.-++|..+|=. ++ + ..++++++.+||
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR---TG--d-------qSrdivLvlAtN 493 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---TG--D-------QSRDIVLVLATN 493 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH---hc--c-------cccceEEEeccC
Confidence 1 124566676655433 38999999998755421 112333333211 00 0 135678899999
Q ss_pred CCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcH
Q 003349 465 RAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIP 500 (828)
Q Consensus 465 ~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~ 500 (828)
+|..||.++-+||+ +|+||.|..++|.+++..++.+
T Consensus 494 rpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 494 RPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred CccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 99999999999998 8999999999999999998754
No 114
>PHA02244 ATPase-like protein
Probab=99.53 E-value=4.8e-13 Score=144.02 Aligned_cols=135 Identities=20% Similarity=0.245 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 418 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~ 418 (828)
.+.++||+||||||||++|+++|..++.+++.++. ..+...+.|..........+.+..+++. ..+++|||++.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~--l~d~~~L~G~i~~~g~~~dgpLl~A~~~----GgvLiLDEId~ 191 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA--IMDEFELKGFIDANGKFHETPFYEAFKK----GGLFFIDEIDA 191 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec--ChHHHhhcccccccccccchHHHHHhhc----CCEEEEeCcCc
Confidence 34568999999999999999999999999998873 2233334332111111233455555543 56999999999
Q ss_pred cCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-----------CCCCccccCceEEEEcCCCCH
Q 003349 419 TGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-----------QPIPPPLLDRMEVIELPGYTP 487 (828)
Q Consensus 419 l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-----------~~l~~aLl~R~~~i~~~~~~~ 487 (828)
+.++. +..|..+++.+ +.+...+......++.+|+|+|+. ..+++++++||.+|+|+.|+.
T Consensus 192 a~p~v----q~~L~~lLd~r----~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 192 SIPEA----LIIINSAIANK----FFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred CCHHH----HHHHHHHhccC----eEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 99877 88888988754 222222222234678999999983 478999999999999999874
No 115
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.53 E-value=1.4e-13 Score=150.75 Aligned_cols=177 Identities=19% Similarity=0.221 Sum_probs=122.8
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccC
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM 393 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~ 393 (828)
+++|++++++.+..++... ..+..++|+||||+|||++|+++++.++.++..++++. .....+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i----------- 84 (316)
T PHA02544 22 ECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFV----------- 84 (316)
T ss_pred HhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHH-----------
Confidence 5789999999998887521 22345666999999999999999999988888887665 111111
Q ss_pred cchHHHHHHhcC--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCc
Q 003349 394 PGRLIDGLKRVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPP 471 (828)
Q Consensus 394 ~g~l~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~ 471 (828)
...+.......+ ....+++|||+|.+.... .++.|..+++.. .+++.||+|+|....+.+
T Consensus 85 ~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~---~~~~L~~~le~~---------------~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 85 RNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD---AQRHLRSFMEAY---------------SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHhhcccCCCeEEEEECcccccCHH---HHHHHHHHHHhc---------------CCCceEEEEcCChhhchH
Confidence 011212111111 124599999999984321 256666667632 235689999999999999
Q ss_pred cccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhh
Q 003349 472 PLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 528 (828)
Q Consensus 472 aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~ 528 (828)
++++||..+.|+.|+.+++..+++..+... .. ...+.+..++++++.+++....
T Consensus 147 ~l~sR~~~i~~~~p~~~~~~~il~~~~~~~-~~--~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 147 PLRSRCRVIDFGVPTKEEQIEMMKQMIVRC-KG--ILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred HHHhhceEEEeCCCCHHHHHHHHHHHHHHH-HH--HHHhcCCCCCHHHHHHHHHhcC
Confidence 999999999999999999998887654321 11 1123457889999999997554
No 116
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=9.2e-14 Score=150.47 Aligned_cols=153 Identities=26% Similarity=0.323 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHhhhC---CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcc
Q 003349 319 VRVKQRIIEYLAVRKLK---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPG 395 (828)
Q Consensus 319 ~~~~~~l~~~l~~~~~~---~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g 395 (828)
+.+++-+..++.....+ +.....+.|||||||||||+++.|+|+.|+.+++.+++++..+.++
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~d-------------- 276 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSD-------------- 276 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHH--------------
Confidence 34455566666554433 3345568999999999999999999999999999999988766443
Q ss_pred hHHHHHHhcCCCCcEEEEecccccCCC--CCCC------------hHHHHHHhcCcccccccccccCCeeecCCCcEEEE
Q 003349 396 RLIDGLKRVGVCNPVMLLDEIDKTGSD--VRGD------------PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA 461 (828)
Q Consensus 396 ~l~~~~~~~~~~~~vl~iDEid~l~~~--~~~~------------~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~ 461 (828)
+...+...+ ..+||+|.+||+...- ++.. ..+.||..+|+. +.... ..-+||+
T Consensus 277 -Lr~LL~~t~-~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGl----wSscg-------~ERIivF 343 (457)
T KOG0743|consen 277 -LRHLLLATP-NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGL----WSSCG-------DERIIVF 343 (457)
T ss_pred -HHHHHHhCC-CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccc----cccCC-------CceEEEE
Confidence 444554443 3579999999998531 1111 257788888842 11111 2348999
Q ss_pred ecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhh
Q 003349 462 TANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHL 498 (828)
Q Consensus 462 TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l 498 (828)
|||+.+.|||||+| |+| .|+++..+.++...++++++
T Consensus 344 TTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 344 TTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred ecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 99999999999999 999 69999999999999999987
No 117
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.5e-13 Score=159.89 Aligned_cols=197 Identities=20% Similarity=0.228 Sum_probs=130.2
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCcCchhhhc-cCccc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADIR-GHRRT 388 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~~~~~~l~-g~~~~ 388 (828)
..+++||+.+++.+...+... ..++.+||+||+|||||++|+.+|+.++.... ...|+.......+. |....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d 89 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD 89 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 457899999999998877642 23456899999999999999999999853211 00111100000000 00000
Q ss_pred c--c-c---cCcchHH---HHHHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 389 Y--I-G---SMPGRLI---DGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 389 ~--v-g---~~~g~l~---~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
+ + + .....++ +.....+. ...|++|||+|.+.... +++|+..|++. ..++
T Consensus 90 v~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a----~naLLKtLEep---------------p~~~ 150 (559)
T PRK05563 90 VIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGA----FNALLKTLEEP---------------PAHV 150 (559)
T ss_pred eEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHH----HHHHHHHhcCC---------------CCCe
Confidence 0 0 0 0011222 22222222 23399999999997655 89999998753 2456
Q ss_pred EEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 458 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
+||++|+.+..+++.+++||..+.|.+++.++...++...+. ..++.++++++..++.... .+.|...
T Consensus 151 ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~----------~egi~i~~~al~~ia~~s~--G~~R~al 218 (559)
T PRK05563 151 IFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILD----------KEGIEYEDEALRLIARAAE--GGMRDAL 218 (559)
T ss_pred EEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CCHHHHH
Confidence 888888888999999999999999999999999888877642 2346789999998887554 3566666
Q ss_pred HHHHHHH
Q 003349 538 RNLAALA 544 (828)
Q Consensus 538 ~~i~~l~ 544 (828)
..++.++
T Consensus 219 ~~Ldq~~ 225 (559)
T PRK05563 219 SILDQAI 225 (559)
T ss_pred HHHHHHH
Confidence 6665543
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=9.3e-14 Score=159.92 Aligned_cols=192 Identities=22% Similarity=0.261 Sum_probs=126.9
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCc-----------Cch
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGV-----------KDE 379 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~-----------~~~ 379 (828)
++++||+.+++.+...+... .-.+.+||+||||||||++|+.+|+.+..... ...|+.- .+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46789999999988877633 22467999999999999999999999864211 0011110 001
Q ss_pred hhhccCcccccccCcchHHHHHHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 380 ADIRGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 380 ~~l~g~~~~~vg~~~g~l~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
..+.+.....+.. -..+.+.+...+. ...|+||||+|++.... ++.|++.|++. ..++
T Consensus 91 ~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a----~naLLk~LEEP---------------~~~~ 150 (624)
T PRK14959 91 VEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREA----FNALLKTLEEP---------------PARV 150 (624)
T ss_pred EEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHH----HHHHHHHhhcc---------------CCCE
Confidence 1111100000100 0122233332221 23499999999998665 89999999742 2356
Q ss_pred EEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 458 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
+||++||.+..+.+.+++||.+|.|++++.++...+++..+. ..++.+++++++.++.... ..+|...
T Consensus 151 ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~----------~egi~id~eal~lIA~~s~--GdlR~Al 218 (624)
T PRK14959 151 TFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLG----------REGVDYDPAAVRLIARRAA--GSVRDSM 218 (624)
T ss_pred EEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CCHHHHH
Confidence 888889988899999999999999999999999988877542 2246789999999887543 2345444
Q ss_pred HHHH
Q 003349 538 RNLA 541 (828)
Q Consensus 538 ~~i~ 541 (828)
..++
T Consensus 219 ~lLe 222 (624)
T PRK14959 219 SLLG 222 (624)
T ss_pred HHHH
Confidence 4444
No 119
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=151.99 Aligned_cols=177 Identities=29% Similarity=0.315 Sum_probs=122.0
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhc
Q 003349 304 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 383 (828)
Q Consensus 304 l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~ 383 (828)
.......+...++|.++++..+...+. .+.++||.||||||||++|+.+|+.++.++.++.|+....++++.
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~--------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALL--------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLL 86 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHH--------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhc
Confidence 344455666678898888777765543 456799999999999999999999999999999999988888888
Q ss_pred cCcccccccCcchHHHHHHhcCCCC---cEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEE
Q 003349 384 GHRRTYIGSMPGRLIDGLKRVGVCN---PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFV 460 (828)
Q Consensus 384 g~~~~~vg~~~g~l~~~~~~~~~~~---~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI 460 (828)
|......-... .-...+...+... +++++|||+++.++. +++|++.|++.+....... .... ...+++|
T Consensus 87 G~~~~~~~~~~-~~~~~~~~gpl~~~~~~ill~DEInra~p~~----q~aLl~~l~e~~vtv~~~~--~~~~-~~~f~vi 158 (329)
T COG0714 87 GTYAYAALLLE-PGEFRFVPGPLFAAVRVILLLDEINRAPPEV----QNALLEALEERQVTVPGLT--TIRL-PPPFIVI 158 (329)
T ss_pred CchhHhhhhcc-CCeEEEecCCcccccceEEEEeccccCCHHH----HHHHHHHHhCcEEEECCcC--CcCC-CCCCEEE
Confidence 75422110000 0001111222222 399999999999988 9999999998654321111 0122 2457888
Q ss_pred EecCCC-----CCCCccccCceE-EEEcCCCCH-HHHHHHHHH
Q 003349 461 ATANRA-----QPIPPPLLDRME-VIELPGYTP-EEKLRIAMR 496 (828)
Q Consensus 461 ~TtN~~-----~~l~~aLl~R~~-~i~~~~~~~-ee~~~Il~~ 496 (828)
+|+|+. ..+++|+++||. .+.++.|.. ++...+...
T Consensus 159 aT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 159 ATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred EccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHh
Confidence 999954 478999999994 688888844 444444433
No 120
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.4e-14 Score=147.10 Aligned_cols=160 Identities=24% Similarity=0.362 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhhhCCC--------CCCCeEEEEcCCCCchhHHHHHHHHHhCCC---------eEEEecCCcCchhh
Q 003349 319 VRVKQRIIEYLAVRKLKPD--------ARGPVLCFVGPPGVGKTSLASSIASALGRK---------FIRISLGGVKDEAD 381 (828)
Q Consensus 319 ~~~~~~l~~~l~~~~~~~~--------~~~~~lLL~GppGtGKT~la~~la~~l~~~---------~~~i~~~~~~~~~~ 381 (828)
..+|+++..+......... .....+||+||||||||+|++++|+.+... ++.+++....
T Consensus 148 s~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF---- 223 (423)
T KOG0744|consen 148 SNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF---- 223 (423)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH----
Confidence 4578888877765433211 234579999999999999999999998422 2233322222
Q ss_pred hccCcccccccCcchHHHHHHhc----CCCCc--EEEEecccccCCCC-----CCC------hHHHHHHhcCcccccccc
Q 003349 382 IRGHRRTYIGSMPGRLIDGLKRV----GVCNP--VMLLDEIDKTGSDV-----RGD------PASALLEVLDPEQNKTFN 444 (828)
Q Consensus 382 l~g~~~~~vg~~~g~l~~~~~~~----~~~~~--vl~iDEid~l~~~~-----~~~------~~~~Ll~~ld~~~~~~~~ 444 (828)
.+|.+++...+...|.+- ...+. .++|||++.+...+ ++. ..|+||..||...
T Consensus 224 -----SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK----- 293 (423)
T KOG0744|consen 224 -----SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK----- 293 (423)
T ss_pred -----HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----
Confidence 256666655555544431 11222 57899999986433 122 2789999998542
Q ss_pred cccCCeeecCCCcEEEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcH
Q 003349 445 DHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIP 500 (828)
Q Consensus 445 ~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~ 500 (828)
...|+++++|+|..+.+|.||.||-| +.++.+|+.+.+.+|++.-+.+
T Consensus 294 --------~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 294 --------RYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred --------cCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 14689999999999999999999999 5899999999999999987643
No 121
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=9.9e-14 Score=162.15 Aligned_cols=196 Identities=20% Similarity=0.230 Sum_probs=130.7
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE--EecCCc-----------Cc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGGV-----------KD 378 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~--i~~~~~-----------~~ 378 (828)
.++++||+.+++.+...+... ..++.+||+||+|+|||++|+++|+.++..... -.|+.. .+
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d 89 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD 89 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 357899999999998887632 234568999999999999999999998642110 001100 00
Q ss_pred hhhhccCcccccccCcchHHHHHHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 379 EADIRGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
...+.+.....+.. -..+.+.+...+. ...|+||||+|.++... +++|+..|++. ..+
T Consensus 90 ~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a----~naLLk~LEep---------------p~~ 149 (576)
T PRK14965 90 VFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNA----FNALLKTLEEP---------------PPH 149 (576)
T ss_pred eeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHH----HHHHHHHHHcC---------------CCC
Confidence 00111110000000 0122333333332 23499999999998765 89999999853 346
Q ss_pred cEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 457 VIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
++||++||.++.+.+.+++||..+.|..++.++....+...+. ..++.++++++..++....+ ++|..
T Consensus 150 ~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~----------~egi~i~~~al~~la~~a~G--~lr~a 217 (576)
T PRK14965 150 VKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIAD----------QEGISISDAALALVARKGDG--SMRDS 217 (576)
T ss_pred eEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHH----------HhCCCCCHHHHHHHHHHcCC--CHHHH
Confidence 7888888989999999999999999999999998887776642 23467899999998876543 45555
Q ss_pred HHHHHHHH
Q 003349 537 ERNLAALA 544 (828)
Q Consensus 537 ~~~i~~l~ 544 (828)
.+.+++++
T Consensus 218 l~~Ldqli 225 (576)
T PRK14965 218 LSTLDQVL 225 (576)
T ss_pred HHHHHHHH
Confidence 55555443
No 122
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.51 E-value=8.9e-15 Score=139.98 Aligned_cols=125 Identities=30% Similarity=0.507 Sum_probs=89.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccc---cccCcchHHHHHHhcCCCCcEEEEecccc
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTY---IGSMPGRLIDGLKRVGVCNPVMLLDEIDK 418 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~---vg~~~g~l~~~~~~~~~~~~vl~iDEid~ 418 (828)
++||+||||||||++++.+|+.++.++..+.++...+..++.|..... ....++.+..+++. +.+++|||+++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~----~~il~lDEin~ 76 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRK----GGILVLDEINR 76 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHE----EEEEEESSCGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccc----eeEEEECCccc
Confidence 489999999999999999999999999999999988888888765421 11223444444442 45999999999
Q ss_pred cCCCCCCChHHHHHHhcCcccccccccccCCeeecCC-------CcEEEEecCCCC----CCCccccCce
Q 003349 419 TGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS-------KVIFVATANRAQ----PIPPPLLDRM 477 (828)
Q Consensus 419 l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~-------~viiI~TtN~~~----~l~~aLl~R~ 477 (828)
+.++. ++.|+.+++..... .... +...... ++.||+|+|+.. .++++|+|||
T Consensus 77 a~~~v----~~~L~~ll~~~~~~--~~~~-~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 77 APPEV----LESLLSLLEERRIQ--LPEG-GEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp --HHH----HHTTHHHHSSSEEE--E-TS-SSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred CCHHH----HHHHHHHHhhCccc--ccCC-CcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 98776 88999999865422 1111 2222122 489999999998 9999999998
No 123
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=1.5e-13 Score=157.42 Aligned_cols=193 Identities=19% Similarity=0.229 Sum_probs=127.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE-EE-ecCCcC-----------ch
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-RI-SLGGVK-----------DE 379 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~-~i-~~~~~~-----------~~ 379 (828)
.+++||+.+++.+...+... ..++.+||+||||||||++|+++|+.+..... .. .|+.-. +.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 46889999999988876532 23356999999999999999999999853211 00 111110 00
Q ss_pred hhhccCcccccccC-cchHHHHHHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 380 ADIRGHRRTYIGSM-PGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 380 ~~l~g~~~~~vg~~-~g~l~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
..+.+. ...|.. -..+...+...+. ...|++|||+|.+.... +++|+..|++. ..+
T Consensus 91 ieIdaa--s~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A----~NaLLKtLEEP---------------p~~ 149 (605)
T PRK05896 91 VELDAA--SNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSA----WNALLKTLEEP---------------PKH 149 (605)
T ss_pred EEeccc--cccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHH----HHHHHHHHHhC---------------CCc
Confidence 001000 001100 0122233333322 23499999999997654 89999999853 235
Q ss_pred cEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 457 VIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
++||++|+.+..+.+++++||..+.|.+++.++...++...+. ..++.++++++..++....+ .+|..
T Consensus 150 tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~----------kegi~Is~eal~~La~lS~G--dlR~A 217 (605)
T PRK05896 150 VVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAK----------KEKIKIEDNAIDKIADLADG--SLRDG 217 (605)
T ss_pred EEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--cHHHH
Confidence 6788888888999999999999999999999999988887652 22467889998888875543 35555
Q ss_pred HHHHHHH
Q 003349 537 ERNLAAL 543 (828)
Q Consensus 537 ~~~i~~l 543 (828)
.+.++.+
T Consensus 218 lnlLekL 224 (605)
T PRK05896 218 LSILDQL 224 (605)
T ss_pred HHHHHHH
Confidence 5555554
No 124
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.50 E-value=1.4e-13 Score=163.30 Aligned_cols=191 Identities=20% Similarity=0.301 Sum_probs=129.6
Q ss_pred ccccchHHHHH---HHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccc
Q 003349 313 SDHYGLVRVKQ---RIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTY 389 (828)
Q Consensus 313 ~~i~G~~~~~~---~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~ 389 (828)
++++||+.++. .+...+.. ...++++|+|||||||||+|+++++.++.++..+++... ...++. ..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i~dir----~~ 96 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GVKDLR----AE 96 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hhHHHH----HH
Confidence 35789998875 34343331 234679999999999999999999999888877765421 000000 00
Q ss_pred cccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEec--CCCC
Q 003349 390 IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA--NRAQ 467 (828)
Q Consensus 390 vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt--N~~~ 467 (828)
+ ......+.. .....++||||+|.+.... ++.|+..++.. .+++|++| |+..
T Consensus 97 i----~~a~~~l~~-~~~~~IL~IDEIh~Ln~~q----QdaLL~~lE~g-----------------~IiLI~aTTenp~~ 150 (725)
T PRK13341 97 V----DRAKERLER-HGKRTILFIDEVHRFNKAQ----QDALLPWVENG-----------------TITLIGATTENPYF 150 (725)
T ss_pred H----HHHHHHhhh-cCCceEEEEeChhhCCHHH----HHHHHHHhcCc-----------------eEEEEEecCCChHh
Confidence 0 011111111 1124599999999998665 78888877631 24555543 4446
Q ss_pred CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 003349 468 PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 545 (828)
Q Consensus 468 ~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~ 545 (828)
.+++++++|+.++.|++++.+++..+++..+.... . +.....+.++++++++|++.. ..++|.+.+.|+.++.
T Consensus 151 ~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~-~--~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 151 EVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKE-R--GYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVE 223 (725)
T ss_pred hhhhHhhccccceecCCCCHHHHHHHHHHHHHHHH-h--hcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 78999999999999999999999999998764321 1 122345789999999999865 3568888888887663
No 125
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=2.5e-13 Score=158.60 Aligned_cols=195 Identities=20% Similarity=0.235 Sum_probs=128.9
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE---ecCCcC-----chhhhcc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI---SLGGVK-----DEADIRG 384 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i---~~~~~~-----~~~~l~g 384 (828)
.+++||+.+++.+...+... .-++.+||+||+|||||++|+++|+.+....... .|.... ....+..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 46889999999988877633 2345689999999999999999999886532110 111000 0000000
Q ss_pred CcccccccC-cchHHHHHHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEE
Q 003349 385 HRRTYIGSM-PGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA 461 (828)
Q Consensus 385 ~~~~~vg~~-~g~l~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~ 461 (828)
......|.. -..+.+.+...+. ...|++|||+|.+.... +++|+..|++. ...++||+
T Consensus 93 daasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A----~NALLKtLEEP---------------P~~tifIL 153 (725)
T PRK07133 93 DAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSA----FNALLKTLEEP---------------PKHVIFIL 153 (725)
T ss_pred eccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHH----HHHHHHHhhcC---------------CCceEEEE
Confidence 000001100 0123333333332 23399999999998765 89999999853 23567888
Q ss_pred ecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHH
Q 003349 462 TANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLA 541 (828)
Q Consensus 462 TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~ 541 (828)
+|+.++.+.+.+++||..+.|.+++.++...++...+. +.++.++++++..++..+.+ ++|...+.++
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~----------kegI~id~eAl~~LA~lS~G--slR~AlslLe 221 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILE----------KENISYEKNALKLIAKLSSG--SLRDALSIAE 221 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CHHHHHHHHH
Confidence 88888999999999999999999999999988887642 22467888888888875543 3455555555
Q ss_pred HH
Q 003349 542 AL 543 (828)
Q Consensus 542 ~l 543 (828)
.+
T Consensus 222 kl 223 (725)
T PRK07133 222 QV 223 (725)
T ss_pred HH
Confidence 44
No 126
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.50 E-value=4.7e-13 Score=148.95 Aligned_cols=202 Identities=17% Similarity=0.207 Sum_probs=128.6
Q ss_pred cHHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC--CeE--EEecCCcCc
Q 003349 303 DLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR--KFI--RISLGGVKD 378 (828)
Q Consensus 303 ~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~--~~~--~i~~~~~~~ 378 (828)
.+..+...+.+.++|++++++.+...+ ..+.++||.||||||||++|++++...+. +|. ++.++ .
T Consensus 10 ~i~~l~~~l~~~i~gre~vI~lll~aa--------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft---t 78 (498)
T PRK13531 10 RISRLSSALEKGLYERSHAIRLCLLAA--------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS---T 78 (498)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHH--------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec---C
Confidence 466778888999999999999887655 35678999999999999999999998754 333 33332 2
Q ss_pred hhhhccCcccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 379 EADIRGHRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
+.++.|...-+.....+.+. .+...+. ...++|+|||++++++. +++|+++|++++.+ . .+.+......
T Consensus 79 p~DLfG~l~i~~~~~~g~f~-r~~~G~L~~A~lLfLDEI~rasp~~----QsaLLeam~Er~~t---~--g~~~~~lp~r 148 (498)
T PRK13531 79 PEEVFGPLSIQALKDEGRYQ-RLTSGYLPEAEIVFLDEIWKAGPAI----LNTLLTAINERRFR---N--GAHEEKIPMR 148 (498)
T ss_pred cHHhcCcHHHhhhhhcCchh-hhcCCccccccEEeecccccCCHHH----HHHHHHHHHhCeEe---c--CCeEEeCCCc
Confidence 34555432111100112211 1111111 23399999999999887 99999999875533 2 2445555555
Q ss_pred EEEEecCCCC---CCCccccCceE-EEEcCCCCH-HHHHHHHHHhhc-------------HHHHHhcCCCCcccccCHHH
Q 003349 458 IFVATANRAQ---PIPPPLLDRME-VIELPGYTP-EEKLRIAMRHLI-------------PRVLDQHGLGSEFLQIPEAM 519 (828)
Q Consensus 458 iiI~TtN~~~---~l~~aLl~R~~-~i~~~~~~~-ee~~~Il~~~l~-------------~~~~~~~~~~~~~~~i~~~~ 519 (828)
+++++||... .+.+++++||. .+.+++++. ++..+++..... ...+....-.-..+.+++.+
T Consensus 149 fiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v 228 (498)
T PRK13531 149 LLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHV 228 (498)
T ss_pred EEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHH
Confidence 6677778543 34469999997 489999974 555777764311 01001000012357788888
Q ss_pred HHHHHH
Q 003349 520 VKLVIQ 525 (828)
Q Consensus 520 l~~l~~ 525 (828)
.+++.+
T Consensus 229 ~eyI~~ 234 (498)
T PRK13531 229 FELIFQ 234 (498)
T ss_pred HHHHHH
Confidence 888876
No 127
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.5e-13 Score=158.74 Aligned_cols=197 Identities=20% Similarity=0.212 Sum_probs=127.8
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE--EecCCcCchhhhc-cCccc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGGVKDEADIR-GHRRT 388 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~--i~~~~~~~~~~l~-g~~~~ 388 (828)
..+++||+.+++.+...+... ..++.+||+||||||||++|+.+|+.++..... -.|+.-.....+. |....
T Consensus 15 f~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 346889999999988877632 223457999999999999999999998653210 0111100000000 00000
Q ss_pred cc---cc---CcchHHHHHH---hcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 389 YI---GS---MPGRLIDGLK---RVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 389 ~v---g~---~~g~l~~~~~---~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
++ +. .-..+++.+. ..+. ...|+||||+|++.... +++|+..|++. ..++
T Consensus 90 ~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a----~naLLK~LEep---------------p~~~ 150 (527)
T PRK14969 90 LIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSA----FNAMLKTLEEP---------------PEHV 150 (527)
T ss_pred eeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHH----HHHHHHHHhCC---------------CCCE
Confidence 00 00 0112333322 2222 23499999999998755 89999999853 2356
Q ss_pred EEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 458 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
.||++|+.+..+.+.+++||..+.|.+++.++..+.+...+. .+++.++++++..++....+ ..|...
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~----------~egi~~~~~al~~la~~s~G--slr~al 218 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILE----------QENIPFDATALQLLARAAAG--SMRDAL 218 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CHHHHH
Confidence 788888888889889999999999999999999888877642 22467899999988875432 355555
Q ss_pred HHHHHHH
Q 003349 538 RNLAALA 544 (828)
Q Consensus 538 ~~i~~l~ 544 (828)
+.++.++
T Consensus 219 ~lldqai 225 (527)
T PRK14969 219 SLLDQAI 225 (527)
T ss_pred HHHHHHH
Confidence 5554443
No 128
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.49 E-value=1.5e-13 Score=149.74 Aligned_cols=213 Identities=18% Similarity=0.281 Sum_probs=154.0
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCc---hhhhccCcc
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRR 387 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~---~~~l~g~~~ 387 (828)
.+||++.+...+.+.+..-. .....+|+.|.+||||..+|++|-+..+ .||+.+||..+.. +++++|+.+
T Consensus 224 ~iIG~S~am~~ll~~i~~VA----~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeK 299 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVA----KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEK 299 (550)
T ss_pred cceecCHHHHHHHHHHHHHh----cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccc
Confidence 58899999988888776432 2445799999999999999999998874 6999999988633 677777765
Q ss_pred cc-cccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC
Q 003349 388 TY-IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 466 (828)
Q Consensus 388 ~~-vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~ 466 (828)
+- .|+.. .-...|..+ .++-+|+|||..++... |..||.+|.+++..+..... ..++ +|.+|++||+.
T Consensus 300 GAFTGA~~-~r~GrFElA--dGGTLFLDEIGelPL~l----QaKLLRvLQegEieRvG~~r-~ikV---DVRiIAATNRD 368 (550)
T COG3604 300 GAFTGAIN-TRRGRFELA--DGGTLFLDEIGELPLAL----QAKLLRVLQEGEIERVGGDR-TIKV---DVRVIAATNRD 368 (550)
T ss_pred cccccchh-ccCcceeec--CCCeEechhhccCCHHH----HHHHHHHHhhcceeecCCCc-eeEE---EEEEEeccchh
Confidence 42 11111 111122222 35699999999999988 99999999866543332221 2333 46899999986
Q ss_pred -------CCCCccccCceEEEEcCCCCHHHHH---HHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 467 -------QPIPPPLLDRMEVIELPGYTPEEKL---RIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 467 -------~~l~~aLl~R~~~i~~~~~~~ee~~---~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
..+.+.|..|+.++.+..|+..||. -++..++..+...+.|.. .+.+++++++.+.+ |.+..++|.|
T Consensus 369 L~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~--~l~ls~~Al~~L~~-y~wPGNVREL 445 (550)
T COG3604 369 LEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA--ILSLSAEALELLSS-YEWPGNVREL 445 (550)
T ss_pred HHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc--ccccCHHHHHHHHc-CCCCCcHHHH
Confidence 4888999999998666666665553 356677777777776643 57899999998776 7778889988
Q ss_pred HHHHHHHH
Q 003349 537 ERNLAALA 544 (828)
Q Consensus 537 ~~~i~~l~ 544 (828)
++.|++.+
T Consensus 446 en~veRav 453 (550)
T COG3604 446 ENVVERAV 453 (550)
T ss_pred HHHHHHHH
Confidence 87776655
No 129
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.49 E-value=1.1e-13 Score=155.80 Aligned_cols=195 Identities=23% Similarity=0.291 Sum_probs=143.1
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE-------------EEecCCcCc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-------------RISLGGVKD 378 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~-------------~i~~~~~~~ 378 (828)
..+++||+.+.+.+.+.+...+. .+.+||.||-||||||+||.+|+.++.... .++-+...|
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCccc
Confidence 45679999999999998875543 356899999999999999999999975431 111111222
Q ss_pred hhhhccCcccccccCcchHHHHHHh---cCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec
Q 003349 379 EADIRGHRRTYIGSMPGRLIDGLKR---VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~~~~~~---~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
.-++.+....-+ ..+++.... ++. ...|++|||++.++... +|+||..|++.
T Consensus 90 viEiDaASn~gV----ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~a----fNALLKTLEEP--------------- 146 (515)
T COG2812 90 VIEIDAASNTGV----DDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQA----FNALLKTLEEP--------------- 146 (515)
T ss_pred chhhhhhhccCh----HHHHHHHHHhccCCccccceEEEEecHHhhhHHH----HHHHhcccccC---------------
Confidence 222322222211 233333333 332 22399999999999877 99999999863
Q ss_pred CCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 454 LSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
.+++.||++|..+..+++..+|||..+.|..++.++....+...+ .++++.++++++..+++... .++
T Consensus 147 P~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~----------~~E~I~~e~~aL~~ia~~a~--Gs~ 214 (515)
T COG2812 147 PSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAIL----------DKEGINIEEDALSLIARAAE--GSL 214 (515)
T ss_pred ccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHH----------HhcCCccCHHHHHHHHHHcC--CCh
Confidence 568899999999999999999999999999999998888777764 24568899999999887554 467
Q ss_pred HHHHHHHHHHHHH
Q 003349 534 RNLERNLAALARA 546 (828)
Q Consensus 534 R~l~~~i~~l~~~ 546 (828)
|+....+..++..
T Consensus 215 RDalslLDq~i~~ 227 (515)
T COG2812 215 RDALSLLDQAIAF 227 (515)
T ss_pred hhHHHHHHHHHHc
Confidence 8777777776643
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=4.1e-13 Score=153.07 Aligned_cols=196 Identities=15% Similarity=0.138 Sum_probs=129.5
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE-EE-ecCCcCchhhh-ccC-ccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-RI-SLGGVKDEADI-RGH-RRT 388 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~-~i-~~~~~~~~~~l-~g~-~~~ 388 (828)
.+++||+.+++.+...+... .-++.+||+||||+|||++|+++|+.+...-. .. .|........+ .+. ..-
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 46899999999998887533 23456799999999999999999998842110 00 00000000000 000 000
Q ss_pred c-cccC----cchHHHHHHh---cCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcE
Q 003349 389 Y-IGSM----PGRLIDGLKR---VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458 (828)
Q Consensus 389 ~-vg~~----~g~l~~~~~~---~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vi 458 (828)
+ .+.. -..+++.... .+. ...|++|||+|.+..+. +++|+..|++. ..++.
T Consensus 89 ~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A----~NALLK~LEEp---------------p~~t~ 149 (535)
T PRK08451 89 IEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEA----FNALLKTLEEP---------------PSYVK 149 (535)
T ss_pred EEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHH----HHHHHHHHhhc---------------CCceE
Confidence 0 0000 1234444332 221 23499999999998765 89999999853 23567
Q ss_pred EEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHH
Q 003349 459 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLER 538 (828)
Q Consensus 459 iI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~ 538 (828)
||++|+.+..+.+++++|+..+.|.+++.++....+...+. ..++.++++++..++.... ...|....
T Consensus 150 FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~----------~EGi~i~~~Al~~Ia~~s~--GdlR~aln 217 (535)
T PRK08451 150 FILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILE----------KEGVSYEPEALEILARSGN--GSLRDTLT 217 (535)
T ss_pred EEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CcHHHHHH
Confidence 88888888999999999999999999999998888876642 2346789999999888544 35566666
Q ss_pred HHHHHH
Q 003349 539 NLAALA 544 (828)
Q Consensus 539 ~i~~l~ 544 (828)
.++.++
T Consensus 218 lLdqai 223 (535)
T PRK08451 218 LLDQAI 223 (535)
T ss_pred HHHHHH
Confidence 665554
No 131
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=2.4e-13 Score=151.07 Aligned_cols=185 Identities=15% Similarity=0.194 Sum_probs=117.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhC----CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE-EecCCcCchhhh-ccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLK----PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR-ISLGGVKDEADI-RGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~----~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~-i~~~~~~~~~~l-~g~~ 386 (828)
++++||+.+++.+...+...... +...++.+||+||||+|||++|+++|+.+...... -.|+.-.+...+ .|..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46899999999999988765321 11134579999999999999999999987543210 011100000000 0000
Q ss_pred cc--cc---cc--CcchHHHHHHh---cCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecC
Q 003349 387 RT--YI---GS--MPGRLIDGLKR---VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 387 ~~--~v---g~--~~g~l~~~~~~---~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
+. ++ |. .-..+++.+.. .+. ...|+||||+|.+.+.. +++|++.|++. .
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~a----anaLLk~LEep---------------~ 145 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERA----ANALLKAVEEP---------------P 145 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHH----HHHHHHHhhcC---------------C
Confidence 00 00 00 01233443332 222 22399999999998765 89999999853 2
Q ss_pred CCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 455 SKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 455 ~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
.+++||++|+.++.+.|+++|||..+.|++|+.++..+++.... .++++....++....+..
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---------------~~~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---------------GVDPETARRAARASQGHI 207 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---------------CCCHHHHHHHHHHcCCCH
Confidence 34567777777899999999999999999999998877775321 245666666665444433
No 132
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.48 E-value=2.2e-13 Score=151.20 Aligned_cols=216 Identities=21% Similarity=0.324 Sum_probs=155.3
Q ss_pred hcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCc---hhhhcc
Q 003349 311 LDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRG 384 (828)
Q Consensus 311 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~---~~~l~g 384 (828)
....++|...+.+.+.+.+.... .....+|++|++||||..+|++|-+... .||+.++|..+.. ++.++|
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA----~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG 214 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA----PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG 214 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhc
Confidence 34568899999998888775432 2345699999999999999999998875 4999999998744 456777
Q ss_pred Cccc-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEec
Q 003349 385 HRRT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA 463 (828)
Q Consensus 385 ~~~~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt 463 (828)
+.++ +-|.... -...|..+. ++.+|||||..++.+. |..||.+|.+++..+... +.++ .-++.||++|
T Consensus 215 hekGAFTGA~~~-r~G~fE~A~--GGTLfLDEI~~mpl~~----Q~kLLRvLqe~~~~rvG~---~~~i-~vdvRiIaaT 283 (464)
T COG2204 215 HEKGAFTGAITR-RIGRFEQAN--GGTLFLDEIGEMPLEL----QVKLLRVLQEREFERVGG---NKPI-KVDVRIIAAT 283 (464)
T ss_pred ccccCcCCcccc-cCcceeEcC--CceEEeeccccCCHHH----HHHHHHHHHcCeeEecCC---Cccc-ceeeEEEeec
Confidence 6653 2232221 112333333 5699999999999887 999999998765433222 2232 2367899999
Q ss_pred CCC-------CCCCccccCceEEEEcCCCCHHHHHH---HHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 464 NRA-------QPIPPPLLDRMEVIELPGYTPEEKLR---IAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 464 N~~-------~~l~~aLl~R~~~i~~~~~~~ee~~~---Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
|.. ..|.+.|..|+.++.+..|+..+|.+ .+-.|+.++...+++. ....++++++..+.. |.|..++
T Consensus 284 ~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~--~~~~~s~~a~~~L~~-y~WPGNV 360 (464)
T COG2204 284 NRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGR--PPKGFSPEALAALLA-YDWPGNV 360 (464)
T ss_pred CcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHh-CCCChHH
Confidence 986 48999999999976666666655544 3444555666666653 356889999988776 8888999
Q ss_pred HHHHHHHHHHH
Q 003349 534 RNLERNLAALA 544 (828)
Q Consensus 534 R~l~~~i~~l~ 544 (828)
|.|++.+++.+
T Consensus 361 REL~N~ver~~ 371 (464)
T COG2204 361 RELENVVERAV 371 (464)
T ss_pred HHHHHHHHHHH
Confidence 99998888776
No 133
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.47 E-value=3e-13 Score=149.53 Aligned_cols=215 Identities=20% Similarity=0.300 Sum_probs=146.7
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCc---hhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~---~~~l~g~~ 386 (828)
++++|.+.+..++.+...... .....+|+.|.+||||..+|++|-+.. +.||+.++|..+.. ++.++|..
T Consensus 245 ~~Iig~S~~m~~~~~~akr~A----~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye 320 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRIA----KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE 320 (560)
T ss_pred hhhccCCHHHHHHHHHHHhhc----CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC
Confidence 467888877777776654332 344579999999999999999999887 45999999998643 45555443
Q ss_pred cc-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 387 RT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 387 ~~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
++ |-|+..+--...|..| .++-||||||..++... |..||++|.+.+..+..+. ...+ .++.+|++||.
T Consensus 321 ~GAFTGA~~~GK~GlfE~A--~gGTLFLDEIgempl~L----QaKLLRVLQEkei~rvG~t-~~~~---vDVRIIAATN~ 390 (560)
T COG3829 321 KGAFTGASKGGKPGLFELA--NGGTLFLDEIGEMPLPL----QAKLLRVLQEKEIERVGGT-KPIP---VDVRIIAATNR 390 (560)
T ss_pred CccccccccCCCCcceeec--cCCeEEehhhccCCHHH----HHHHHHHHhhceEEecCCC-Ccee---eEEEEEeccCc
Confidence 22 2233221111222222 35699999999998877 9999999987654332221 1233 35789999998
Q ss_pred C-------CCCCccccCceEEEEcCCCCHHHHHH---HHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 466 A-------QPIPPPLLDRMEVIELPGYTPEEKLR---IAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 466 ~-------~~l~~aLl~R~~~i~~~~~~~ee~~~---Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
. ..|...|..|+.++.+.-|+..+|.+ .+-.++..++...++ +.-..++++++..+.+ |.|..++|.
T Consensus 391 nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~--~~v~~ls~~a~~~L~~-y~WPGNVRE 467 (560)
T COG3829 391 NLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYG--RNVKGLSPDALALLLR-YDWPGNVRE 467 (560)
T ss_pred CHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcC--CCcccCCHHHHHHHHh-CCCCchHHH
Confidence 6 48999999999975555444444332 344445454444443 3334589999987665 888899999
Q ss_pred HHHHHHHHH
Q 003349 536 LERNLAALA 544 (828)
Q Consensus 536 l~~~i~~l~ 544 (828)
|++.|++++
T Consensus 468 LeNviER~v 476 (560)
T COG3829 468 LENVIERAV 476 (560)
T ss_pred HHHHHHHHH
Confidence 999998877
No 134
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=7.6e-13 Score=151.12 Aligned_cols=194 Identities=22% Similarity=0.257 Sum_probs=128.1
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE-E-EecCC-----------cCch
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-R-ISLGG-----------VKDE 379 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~-~-i~~~~-----------~~~~ 379 (828)
.+++||+.+++.+...+... ..++.+||+||||+|||++|+.+|+.++.... . -.|+. ..+.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 46889999999988877532 23456889999999999999999999863110 0 00110 0010
Q ss_pred hhhccCcccccccC-cchHHHHHHhcCCC--CcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 380 ADIRGHRRTYIGSM-PGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 380 ~~l~g~~~~~vg~~-~g~l~~~~~~~~~~--~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
..+.+.. ..|.. -..+.+.+...+.. ..|++|||+|.+.... +++|+..|+.. ...
T Consensus 91 ~eidaas--~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a----~naLLk~LEep---------------p~~ 149 (486)
T PRK14953 91 IEIDAAS--NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEA----FNALLKTLEEP---------------PPR 149 (486)
T ss_pred EEEeCcc--CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHH----HHHHHHHHhcC---------------CCC
Confidence 0010000 00100 01233333333322 3499999999997654 78999988742 234
Q ss_pred cEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 457 VIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
++||++|+..+.+.+++++||..+.|++++.+++..++...+. ..++.++++++..++..+. .++|.+
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k----------~egi~id~~al~~La~~s~--G~lr~a 217 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICN----------EEKIEYEEKALDLLAQASE--GGMRDA 217 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CCHHHH
Confidence 5677777778889999999999999999999999988887752 2246789999999887544 346666
Q ss_pred HHHHHHHH
Q 003349 537 ERNLAALA 544 (828)
Q Consensus 537 ~~~i~~l~ 544 (828)
.+.++.++
T Consensus 218 l~~Ldkl~ 225 (486)
T PRK14953 218 ASLLDQAS 225 (486)
T ss_pred HHHHHHHH
Confidence 66665554
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=5.6e-13 Score=154.49 Aligned_cols=197 Identities=16% Similarity=0.177 Sum_probs=130.7
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCcCchhhhc-cCccc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADIR-GHRRT 388 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~~~~~~l~-g~~~~ 388 (828)
..+++||+.+++.+...+... ..++.+||+||||+|||++|+++|+.++.... ...|+...+...+. +....
T Consensus 15 f~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d 89 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD 89 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC
Confidence 346899999999998887632 23456999999999999999999999864211 00111100000000 00000
Q ss_pred ---ccccC---cchHHHHH---HhcC--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 389 ---YIGSM---PGRLIDGL---KRVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 389 ---~vg~~---~g~l~~~~---~~~~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
+-|.. -..+++.. ...+ ....|++|||++.+.... +++|+..|++. ...+
T Consensus 90 v~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a----~naLLK~LEep---------------p~~~ 150 (563)
T PRK06647 90 VIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSA----FNALLKTIEEP---------------PPYI 150 (563)
T ss_pred eEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHH----HHHHHHhhccC---------------CCCE
Confidence 11111 12333332 2222 223499999999998655 89999998842 2456
Q ss_pred EEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 458 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
+||++|+.+..+.+++++||..+.|.+++.+++.++++..+. ..++.++++++.+|+....+ .+|.+.
T Consensus 151 vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~----------~egi~id~eAl~lLa~~s~G--dlR~al 218 (563)
T PRK06647 151 VFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCL----------EDQIKYEDEALKWIAYKSTG--SVRDAY 218 (563)
T ss_pred EEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CHHHHH
Confidence 788888888899999999999999999999999888877642 23467899999999986543 456666
Q ss_pred HHHHHHH
Q 003349 538 RNLAALA 544 (828)
Q Consensus 538 ~~i~~l~ 544 (828)
..+++++
T Consensus 219 slLdkli 225 (563)
T PRK06647 219 TLFDQVV 225 (563)
T ss_pred HHHHHHH
Confidence 6665543
No 136
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=6.6e-13 Score=150.78 Aligned_cols=193 Identities=18% Similarity=0.190 Sum_probs=128.6
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE---ecCC------c---C--
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI---SLGG------V---K-- 377 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i---~~~~------~---~-- 377 (828)
.++++||+.+++.+...+... ..++.+||+||||+|||++|+++|+.+......- .|+. . .
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 346899999999888877532 2345689999999999999999999885421100 0100 0 0
Q ss_pred chhhhccCcccccccCcchHH---HHHHhc--CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeee
Q 003349 378 DEADIRGHRRTYIGSMPGRLI---DGLKRV--GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF 452 (828)
Q Consensus 378 ~~~~l~g~~~~~vg~~~g~l~---~~~~~~--~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~ 452 (828)
+...+.|. ...|. ..+. +.+... .....|+||||+|.+.... ++.|+..|+..
T Consensus 91 d~~~i~g~--~~~gi--d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~----~n~LLk~lEep-------------- 148 (451)
T PRK06305 91 DVLEIDGA--SHRGI--EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEA----FNSLLKTLEEP-------------- 148 (451)
T ss_pred ceEEeecc--ccCCH--HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHH----HHHHHHHhhcC--------------
Confidence 00001110 00110 1222 222211 1224499999999998655 89999999852
Q ss_pred cCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhc
Q 003349 453 DLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 532 (828)
Q Consensus 453 ~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g 532 (828)
..+++||++||....+.+++++||.+++|++++.++..+++...+. ..++.++++++..++....+ .
T Consensus 149 -~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~----------~eg~~i~~~al~~L~~~s~g--d 215 (451)
T PRK06305 149 -PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAK----------QEGIETSREALLPIARAAQG--S 215 (451)
T ss_pred -CCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--C
Confidence 2356788888888999999999999999999999999988877642 23467899999999986543 4
Q ss_pred hHHHHHHHHHHH
Q 003349 533 VRNLERNLAALA 544 (828)
Q Consensus 533 ~R~l~~~i~~l~ 544 (828)
.|.+.+.++.++
T Consensus 216 lr~a~~~Lekl~ 227 (451)
T PRK06305 216 LRDAESLYDYVV 227 (451)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 137
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=6.4e-13 Score=154.78 Aligned_cols=198 Identities=18% Similarity=0.209 Sum_probs=129.9
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE----------EecCCcCchhh
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR----------ISLGGVKDEAD 381 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~----------i~~~~~~~~~~ 381 (828)
.++++||+.+++.+...+... .-++.+||+|||||||||+|+.+|+.+...... -.|+.-.+...
T Consensus 15 f~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 456889999999988876532 234569999999999999999999998653110 01111100000
Q ss_pred h-ccCccc---ccccC---cchHHHHHHhc---CC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCC
Q 003349 382 I-RGHRRT---YIGSM---PGRLIDGLKRV---GV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLN 449 (828)
Q Consensus 382 l-~g~~~~---~vg~~---~g~l~~~~~~~---~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~ 449 (828)
+ .|.... +.|.. ...+++..... +. ...|++|||+|.+.... +++|+..|++.
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a----~naLLK~LEeP----------- 154 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAA----FNAFLKTLEEP----------- 154 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHH----HHHHHHHHhCC-----------
Confidence 0 000000 11111 12333332222 22 23499999999998654 89999999853
Q ss_pred eeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 450 VPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 450 ~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
...++||++|+....+.+.+.+|+.+++|.+++.++....+...+. ..++.+++++++.++....+
T Consensus 155 ----p~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~----------~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 155 ----PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICR----------AEGIQIDADALQLIARKAQG 220 (620)
T ss_pred ----CCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHhCC
Confidence 2345677777778899999999999999999999998888776542 22467899999999886543
Q ss_pred hhchHHHHHHHHHHHH
Q 003349 530 EAGVRNLERNLAALAR 545 (828)
Q Consensus 530 ~~g~R~l~~~i~~l~~ 545 (828)
.+|.+.+.++.++.
T Consensus 221 --dlr~al~eLeKL~~ 234 (620)
T PRK14954 221 --SMRDAQSILDQVIA 234 (620)
T ss_pred --CHHHHHHHHHHHHH
Confidence 45666666665553
No 138
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.46 E-value=7.6e-13 Score=147.38 Aligned_cols=196 Identities=20% Similarity=0.261 Sum_probs=126.6
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE--EecCCcCchhhh-ccCcccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGGVKDEADI-RGHRRTY 389 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~--i~~~~~~~~~~l-~g~~~~~ 389 (828)
.+++|++.+++.+.+.+... ..++.+||+||||+|||++|+++++.+...... -.|+...+...+ .+....+
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 46889999999998877532 234578999999999999999999988533110 001100000000 0000000
Q ss_pred ---ccc---Ccch---HHHHHHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcE
Q 003349 390 ---IGS---MPGR---LIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458 (828)
Q Consensus 390 ---vg~---~~g~---l~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vi 458 (828)
-+. .... +.+.+...+. ...|++|||+|.+.... ++.|+..++.. ..+++
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~----~~~Ll~~le~~---------------~~~~~ 149 (355)
T TIGR02397 89 IEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSA----FNALLKTLEEP---------------PEHVV 149 (355)
T ss_pred EEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHH----HHHHHHHHhCC---------------cccee
Confidence 000 1112 2222222221 22399999999987544 78899888642 23567
Q ss_pred EEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHH
Q 003349 459 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLER 538 (828)
Q Consensus 459 iI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~ 538 (828)
||+++|.++.+.+++++|+..++|++|+.+++..++..++. ..++.++++++..++....+ ..|.+.+
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~----------~~g~~i~~~a~~~l~~~~~g--~~~~a~~ 217 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILD----------KEGIKIEDEALELIARAADG--SLRDALS 217 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--ChHHHHH
Confidence 88888888888999999999999999999999999988753 22467899999999986543 3455555
Q ss_pred HHHHHH
Q 003349 539 NLAALA 544 (828)
Q Consensus 539 ~i~~l~ 544 (828)
.++.++
T Consensus 218 ~lekl~ 223 (355)
T TIGR02397 218 LLDQLI 223 (355)
T ss_pred HHHHHH
Confidence 555443
No 139
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=4e-13 Score=150.98 Aligned_cols=197 Identities=17% Similarity=0.184 Sum_probs=127.7
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE----------EecCCcCchhh
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR----------ISLGGVKDEAD 381 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~----------i~~~~~~~~~~ 381 (828)
.++++||+.+++.+...+... .-++.+||+||||||||++|+++|+.+...... -.|+.-.+...
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred HhhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 346889999999888777532 234459999999999999999999998652100 01111000000
Q ss_pred h-ccCccc---ccccC---cchHHHH---HHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCC
Q 003349 382 I-RGHRRT---YIGSM---PGRLIDG---LKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLN 449 (828)
Q Consensus 382 l-~g~~~~---~vg~~---~g~l~~~---~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~ 449 (828)
+ .|.... +.|.. ...+.+. +...+. ...|+||||+|.+.... ++.|+..|++.
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~----~~~LLk~LEep----------- 154 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAA----FNAFLKTLEEP----------- 154 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHH----HHHHHHHHhcC-----------
Confidence 0 000000 01111 1223332 222232 22399999999998654 78899888742
Q ss_pred eeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 450 VPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 450 ~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
...++||++++....+.+++.+|+.+++|.+++.++..+.+...+. ..++.+++++++.++....+
T Consensus 155 ----~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~----------~~g~~i~~~al~~l~~~s~g 220 (397)
T PRK14955 155 ----PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE----------AEGISVDADALQLIGRKAQG 220 (397)
T ss_pred ----CCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC
Confidence 2345677777777899999999999999999999999888877642 22467999999999986543
Q ss_pred hhchHHHHHHHHHHH
Q 003349 530 EAGVRNLERNLAALA 544 (828)
Q Consensus 530 ~~g~R~l~~~i~~l~ 544 (828)
..|.+.+.++.++
T Consensus 221 --~lr~a~~~L~kl~ 233 (397)
T PRK14955 221 --SMRDAQSILDQVI 233 (397)
T ss_pred --CHHHHHHHHHHHH
Confidence 4556556666554
No 140
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=8.9e-13 Score=153.42 Aligned_cols=194 Identities=19% Similarity=0.196 Sum_probs=130.0
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe-------cCCcCchhhhc-
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS-------LGGVKDEADIR- 383 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~-------~~~~~~~~~l~- 383 (828)
..+++||+.+++.+...+... .....+||+||+|+|||++|+++|+.++......+ |+.-.....+.
T Consensus 23 f~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 346899999999998877633 23457999999999999999999999865322111 11000000000
Q ss_pred cCc--------ccccccCcchHHHH---HHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCe
Q 003349 384 GHR--------RTYIGSMPGRLIDG---LKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 450 (828)
Q Consensus 384 g~~--------~~~vg~~~g~l~~~---~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~ 450 (828)
|.. ....| -..+++. +...+. ...|+||||+|.++... +++|+..|++.
T Consensus 98 g~h~Dv~e~~a~s~~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a----~naLLKtLEeP------------ 159 (598)
T PRK09111 98 GRHVDVLEMDAASHTG--VDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAA----FNALLKTLEEP------------ 159 (598)
T ss_pred CCCCceEEecccccCC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHH----HHHHHHHHHhC------------
Confidence 000 00111 1223333 332222 23499999999998655 89999999853
Q ss_pred eecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhh
Q 003349 451 PFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 530 (828)
Q Consensus 451 ~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~ 530 (828)
..++.||++|+..+.+.+.+++||..|.|..++.++...+++..+. +.++.++++++..|+....+
T Consensus 160 ---p~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~----------kegi~i~~eAl~lIa~~a~G- 225 (598)
T PRK09111 160 ---PPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAA----------KEGVEVEDEALALIARAAEG- 225 (598)
T ss_pred ---CCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC-
Confidence 2356788888888889999999999999999999999988887652 23467899999888875433
Q ss_pred hchHHHHHHHHHH
Q 003349 531 AGVRNLERNLAAL 543 (828)
Q Consensus 531 ~g~R~l~~~i~~l 543 (828)
.+|.+.+.++++
T Consensus 226 -dlr~al~~Ldkl 237 (598)
T PRK09111 226 -SVRDGLSLLDQA 237 (598)
T ss_pred -CHHHHHHHHHHH
Confidence 455555555554
No 141
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.44 E-value=1.2e-12 Score=144.79 Aligned_cols=191 Identities=19% Similarity=0.257 Sum_probs=123.0
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC-----CeEEEecCCcCch--hhhccC
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR-----KFIRISLGGVKDE--ADIRGH 385 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~-----~~~~i~~~~~~~~--~~l~g~ 385 (828)
.+++|++.+++.+..++.. ...++++|+||||||||++|+++++.+.. ++..+++++.... ..+...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcC
Confidence 3577999999998887652 22347999999999999999999998843 3455565443211 000000
Q ss_pred cc--ccccc-------CcchHHHHHHhc----C--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCe
Q 003349 386 RR--TYIGS-------MPGRLIDGLKRV----G--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 450 (828)
Q Consensus 386 ~~--~~vg~-------~~g~l~~~~~~~----~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~ 450 (828)
+. .+.+. ....+....... + ....+++|||++.+.... ++.|+..++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~----~~~L~~~le~~------------ 152 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDA----QQALRRIMEQY------------ 152 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHH----HHHHHHHHHhc------------
Confidence 00 00111 011122211111 1 123499999999987544 67788877632
Q ss_pred eecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhh
Q 003349 451 PFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 530 (828)
Q Consensus 451 ~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~ 530 (828)
...+.||+|+|.+..+.++|.+|+..+.|.+++.+++.++++..+. +.++.++++++..++....
T Consensus 153 ---~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~al~~l~~~~~-- 217 (337)
T PRK12402 153 ---SRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAE----------AEGVDYDDDGLELIAYYAG-- 217 (337)
T ss_pred ---cCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--
Confidence 1234577777777788889999999999999999999988887642 2346799999999998663
Q ss_pred hchHHHHHHH
Q 003349 531 AGVRNLERNL 540 (828)
Q Consensus 531 ~g~R~l~~~i 540 (828)
..+|.+...+
T Consensus 218 gdlr~l~~~l 227 (337)
T PRK12402 218 GDLRKAILTL 227 (337)
T ss_pred CCHHHHHHHH
Confidence 3445444333
No 142
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.44 E-value=8e-13 Score=143.33 Aligned_cols=223 Identities=17% Similarity=0.199 Sum_probs=130.6
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC-------C--eEEEecCCcC---chh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR-------K--FIRISLGGVK---DEA 380 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~-------~--~~~i~~~~~~---~~~ 380 (828)
.+++||+++++.+.-.+.. ....++||.||||||||++|+++++.+.. + +.++.+.... +..
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~ 81 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAID------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSST 81 (334)
T ss_pred HHhCCHHHHHHHHHHHHhc------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCC
Confidence 3578999999887654321 12357999999999999999999999842 1 1111111000 000
Q ss_pred hhccCc------------ccccccCcchHHHH-------HHhc---CCCCcEEEEecccccCCCCCCChHHHHHHhcCcc
Q 003349 381 DIRGHR------------RTYIGSMPGRLIDG-------LKRV---GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPE 438 (828)
Q Consensus 381 ~l~g~~------------~~~vg~~~g~l~~~-------~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~ 438 (828)
.+.... ...+|.. .+... ++.. ...++++|+||++.+.++. ++.|++.|+++
T Consensus 82 ~~~~~~~p~~~~p~~~t~~~l~G~~--d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~----q~~Lle~mee~ 155 (334)
T PRK13407 82 TMIERPTPVVDLPLGVTEDRVVGAL--DIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHI----VDLLLDVAQSG 155 (334)
T ss_pred cccccCCccccCCCCCCcceeecch--hhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHH----HHHHHHHHHcC
Confidence 000000 0122210 01111 1111 1234699999999998877 89999999865
Q ss_pred cccccccccCCeee-cCCCcEEEEecCCCC-CCCccccCceE-EEEcCCCCH-HHHHHHHHHhhcH-----HH-------
Q 003349 439 QNKTFNDHYLNVPF-DLSKVIFVATANRAQ-PIPPPLLDRME-VIELPGYTP-EEKLRIAMRHLIP-----RV------- 502 (828)
Q Consensus 439 ~~~~~~~~~~~~~~-~~~~viiI~TtN~~~-~l~~aLl~R~~-~i~~~~~~~-ee~~~Il~~~l~~-----~~------- 502 (828)
+...-.+ |... ....+++++|+|+.+ .++++|++||. .+.+++++. +++.+|+...... .+
T Consensus 156 ~v~v~r~---G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~ 232 (334)
T PRK13407 156 ENVVERE---GLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAE 232 (334)
T ss_pred CeEEEEC---CeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhcccccc
Confidence 4211111 1111 134689999999865 69999999997 588887777 8888888774321 00
Q ss_pred -------HHhcCCCCcccccCHHHHHHHHHHh--hhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 503 -------LDQHGLGSEFLQIPEAMVKLVIQRY--TREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 503 -------~~~~~~~~~~~~i~~~~l~~l~~~~--~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+....-.-..+.++++++.++++-+ ++..|.| ..|. +++.|...++-+
T Consensus 233 ~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~R---a~i~-l~~aA~a~A~l~ 289 (334)
T PRK13407 233 DMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLR---GELT-LLRAARALAAFE 289 (334)
T ss_pred ccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCch---HHHH-HHHHHHHHHHHc
Confidence 0100001235788999999998833 2334544 4444 555554444433
No 143
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.7e-12 Score=145.01 Aligned_cols=193 Identities=15% Similarity=0.233 Sum_probs=129.0
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc-CchhhhccCccccc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV-KDEADIRGHRRTYI 390 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~-~~~~~l~g~~~~~v 390 (828)
.++++|++.+++.+...+... ..++++||+||||+|||++|+++++.+..+.......+. .+...+.+. .
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~--~-- 86 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA--S-- 86 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc--c--
Confidence 346889999999888877532 234689999999999999999999988653211100000 000000000 0
Q ss_pred ccCcchHHHHHHh---cCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 391 GSMPGRLIDGLKR---VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 391 g~~~g~l~~~~~~---~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
......+.+.+.. .+. ...|+++||++.+.... ++.|+..++.. ...++||+++|.
T Consensus 87 ~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~----~~~ll~~le~~---------------~~~~~~Il~~~~ 147 (367)
T PRK14970 87 NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAA----FNAFLKTLEEP---------------PAHAIFILATTE 147 (367)
T ss_pred CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHH----HHHHHHHHhCC---------------CCceEEEEEeCC
Confidence 0001233333332 221 23499999999887644 78888877632 224577778888
Q ss_pred CCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 466 AQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 466 ~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
...+.+++.+|+.++.|++++.++...++...+. +.++.+++++++.++.... ..+|.+.+.++.++
T Consensus 148 ~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~----------~~g~~i~~~al~~l~~~~~--gdlr~~~~~lekl~ 214 (367)
T PRK14970 148 KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAV----------KEGIKFEDDALHIIAQKAD--GALRDALSIFDRVV 214 (367)
T ss_pred cccCCHHHHhcceeEecCCccHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 8899999999999999999999999888877642 2346789999999998654 34666666666665
No 144
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.5e-12 Score=152.59 Aligned_cols=194 Identities=22% Similarity=0.269 Sum_probs=126.8
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE----EecCCcCchhhh-ccCcc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR----ISLGGVKDEADI-RGHRR 387 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~----i~~~~~~~~~~l-~g~~~ 387 (828)
.+++|++.+++.+...+.... -.+.+||+||||+|||++|+++|+.++..... -.|+.-.....+ .|...
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 468899999999988876432 34679999999999999999999998653210 011110000000 00000
Q ss_pred cc------cccCcchHHHHHHhcC-----CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 388 TY------IGSMPGRLIDGLKRVG-----VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 388 ~~------vg~~~g~l~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.+ .+..-..+++.+..+. ....|+||||+|.+.... +++|+..|++. ..+
T Consensus 91 D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a----~naLLK~LEeP---------------p~~ 151 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAA----FNALLKTLEEP---------------PPR 151 (620)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHH----HHHHHHHHhcC---------------CcC
Confidence 00 0011123444443322 123499999999998655 89999999842 235
Q ss_pred cEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 457 VIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
++||++|+.+..+.+.+++||..+.|..++.++....+..... +.++.++++++..++....+ +.|..
T Consensus 152 tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~----------kegi~is~~al~~La~~s~G--~lr~A 219 (620)
T PRK14948 152 VVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAE----------KESIEIEPEALTLVAQRSQG--GLRDA 219 (620)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHH----------HhCCCCCHHHHHHHHHHcCC--CHHHH
Confidence 6788888888889999999999999999999888777665532 22457888888888875543 34555
Q ss_pred HHHHHH
Q 003349 537 ERNLAA 542 (828)
Q Consensus 537 ~~~i~~ 542 (828)
.+.++.
T Consensus 220 ~~lLek 225 (620)
T PRK14948 220 ESLLDQ 225 (620)
T ss_pred HHHHHH
Confidence 555544
No 145
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.43 E-value=6.8e-13 Score=158.07 Aligned_cols=202 Identities=21% Similarity=0.294 Sum_probs=135.5
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchhhh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 382 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~~l 382 (828)
+.++|.++.++++.+.+... ...++||+||||||||++|+.+|..+ +..++.++++. .+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~-----ll 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS-----LL 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHH-----Hh
Confidence 45889999999998877542 34567899999999999999999765 12222222211 11
Q ss_pred ccCcccccccCcchHHHHHHhcC-CCCcEEEEecccccCCCCC--CCh---HHHHHHhcCcccccccccccCCeeecCCC
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVG-VCNPVMLLDEIDKTGSDVR--GDP---ASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~-~~~~vl~iDEid~l~~~~~--~~~---~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.| ..|.|..+..+...+.... ..+.|||||||+.+..... +.. .+.|..++. ...
T Consensus 255 aG--~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-----------------~g~ 315 (758)
T PRK11034 255 AG--TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-----------------SGK 315 (758)
T ss_pred cc--cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-----------------CCC
Confidence 11 2466666666666655432 2356999999999865432 111 233444443 235
Q ss_pred cEEEEecCCCC-----CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 457 VIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 457 viiI~TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
+.+|++||..+ ..|++|.+||+.|.++.|+.+++..|++... ++....| ++.++++++...+.-..++.
T Consensus 316 i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~-~~ye~~h-----~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 316 IRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK-PKYEAHH-----DVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred eEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH-HHhhhcc-----CCCcCHHHHHHHHHHhhccc
Confidence 68999998864 5799999999999999999999999998753 3333333 47899999988776444444
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAAVK 550 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~~~ 550 (828)
.-|.+-.....++.+|+.+
T Consensus 390 ~~r~lPdKaidlldea~a~ 408 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGAR 408 (758)
T ss_pred cCccChHHHHHHHHHHHHh
Confidence 4455555555666666543
No 146
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.43 E-value=2.4e-12 Score=141.04 Aligned_cols=180 Identities=21% Similarity=0.285 Sum_probs=121.0
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCC-----eEEEecCCcCchhhhccCccc
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK-----FIRISLGGVKDEADIRGHRRT 388 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~-----~~~i~~~~~~~~~~l~g~~~~ 388 (828)
+++|++++++.+..++.. ...++++|+||||||||++++++++.+..+ +..++.+.....
T Consensus 18 ~~~g~~~~~~~l~~~i~~------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~--------- 82 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKE------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGI--------- 82 (319)
T ss_pred HhcCcHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccch---------
Confidence 477999999998887752 223468999999999999999999987432 222222211100
Q ss_pred ccccCcchHHHHHHhcCC---CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 389 YIGSMPGRLIDGLKRVGV---CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 389 ~vg~~~g~l~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
......+.+.....+. ...+++|||++.+.... ++.|+..++.. ..++.+|+++|.
T Consensus 83 --~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~----~~~L~~~le~~---------------~~~~~lIl~~~~ 141 (319)
T PRK00440 83 --DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA----QQALRRTMEMY---------------SQNTRFILSCNY 141 (319)
T ss_pred --HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH----HHHHHHHHhcC---------------CCCCeEEEEeCC
Confidence 0000112222222222 23499999999987544 67888887632 123567888888
Q ss_pred CCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHH
Q 003349 466 AQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLA 541 (828)
Q Consensus 466 ~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~ 541 (828)
...+.+++.+|+.+++|++++.++...+++..+. +.++.++++++.+++....+ ..|.+...++
T Consensus 142 ~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~----------~~~~~i~~~al~~l~~~~~g--d~r~~~~~l~ 205 (319)
T PRK00440 142 SSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAE----------NEGIEITDDALEAIYYVSEG--DMRKAINALQ 205 (319)
T ss_pred ccccchhHHHHhheeeeCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CHHHHHHHHH
Confidence 8888899999999999999999999998887753 22467899999999986543 3444333333
No 147
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2e-12 Score=151.66 Aligned_cols=197 Identities=15% Similarity=0.204 Sum_probs=131.1
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE---ecCCcCchhhhc-c-Cc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI---SLGGVKDEADIR-G-HR 386 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i---~~~~~~~~~~l~-g-~~ 386 (828)
.++++||+.+++.+...+... .-++.+||+||+|+|||++|+.+|+.+....... .|+.-.+...+. + +.
T Consensus 16 f~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 356899999999998887632 2344589999999999999999999885321100 011000000000 0 00
Q ss_pred c--cccccC---cchHHHHHHhc---CC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 387 R--TYIGSM---PGRLIDGLKRV---GV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 387 ~--~~vg~~---~g~l~~~~~~~---~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
. .+-+.. ...+.+.+..+ +. ...|++|||++.+.... +++|+..|++. ..+
T Consensus 91 n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a----~naLLK~LEep---------------p~~ 151 (614)
T PRK14971 91 NIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAA----FNAFLKTLEEP---------------PSY 151 (614)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHH----HHHHHHHHhCC---------------CCC
Confidence 0 000110 12344444222 21 23399999999998655 89999999853 235
Q ss_pred cEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 457 VIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
++||++|+....+.+++++|+.++.|.+++.++....+...+. ..++.++++++..|+.... .+.|.+
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~----------~egi~i~~~al~~La~~s~--gdlr~a 219 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVAS----------KEGITAEPEALNVIAQKAD--GGMRDA 219 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CCHHHH
Confidence 6788888888899999999999999999999999988877642 2347889999999988654 356666
Q ss_pred HHHHHHHH
Q 003349 537 ERNLAALA 544 (828)
Q Consensus 537 ~~~i~~l~ 544 (828)
.+.++.++
T Consensus 220 l~~Lekl~ 227 (614)
T PRK14971 220 LSIFDQVV 227 (614)
T ss_pred HHHHHHHH
Confidence 66666654
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.42 E-value=1e-12 Score=160.15 Aligned_cols=175 Identities=21% Similarity=0.304 Sum_probs=122.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchhhh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 382 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~~l 382 (828)
+.++|++..++++++.+... ...+++|+||||||||++++.+|..+ +.+++.++++.....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag--- 248 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG--- 248 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhc---
Confidence 46899999999988877532 34578899999999999999999987 455666665543221
Q ss_pred ccCcccccccCcchHHHHHHhc--CCCCcEEEEecccccCCCCCC----ChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRV--GVCNPVMLLDEIDKTGSDVRG----DPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~--~~~~~vl~iDEid~l~~~~~~----~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.+|.|..+..+...|... ...+.|+||||++.+.....+ +.++.|...+. ...
T Consensus 249 ----~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-----------------~g~ 307 (857)
T PRK10865 249 ----AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----------------RGE 307 (857)
T ss_pred ----cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-----------------cCC
Confidence 146677667777777542 223569999999999754321 23455544443 235
Q ss_pred cEEEEecCCCC-----CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHH
Q 003349 457 VIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLV 523 (828)
Q Consensus 457 viiI~TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l 523 (828)
+.+|++|+..+ ..+++|.+||+.|.++.|+.+++..|++.. .++....| ++.++++++...
T Consensus 308 l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l-~~~~e~~~-----~v~~~d~a~~~a 373 (857)
T PRK10865 308 LHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL-KERYELHH-----HVQITDPAIVAA 373 (857)
T ss_pred CeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH-hhhhccCC-----CCCcCHHHHHHH
Confidence 68999988876 589999999998899999999999998654 33222222 345566655543
No 149
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.42 E-value=1.4e-12 Score=142.43 Aligned_cols=210 Identities=18% Similarity=0.263 Sum_probs=139.5
Q ss_pred cchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCc---hhhhccCccc-
Q 003349 316 YGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRRT- 388 (828)
Q Consensus 316 ~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~---~~~l~g~~~~- 388 (828)
+|.+.+.+.+.+.+.... ....++||+|+|||||+++|++|..... .+|+.++|+...+ .+.+.|+.++
T Consensus 2 iG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGA 77 (329)
T ss_pred CcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcccccc
Confidence 566667777766665443 2345689999999999999999987663 6899999987643 2334444322
Q ss_pred ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC--
Q 003349 389 YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-- 466 (828)
Q Consensus 389 ~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-- 466 (828)
+.|.... -...+..+ .++++|||||+.+.... |..|+.+|+...... ...... -..++.+|+|||..
T Consensus 78 ~~ga~~~-~~G~~~~a--~gGtL~Ldei~~L~~~~----Q~~Ll~~l~~~~~~~---~g~~~~-~~~~~RiI~at~~~l~ 146 (329)
T TIGR02974 78 FTGAQKR-HQGRFERA--DGGTLFLDELATASLLV----QEKLLRVIEYGEFER---VGGSQT-LQVDVRLVCATNADLP 146 (329)
T ss_pred ccCcccc-cCCchhhC--CCCEEEeCChHhCCHHH----HHHHHHHHHcCcEEe---cCCCce-eccceEEEEechhhHH
Confidence 1222111 11123333 25799999999999887 899999997543211 111111 13467899998865
Q ss_pred -----CCCCccccCceE--EEEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcc-cccCHHHHHHHHHHhhhhhchHHH
Q 003349 467 -----QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEF-LQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 467 -----~~l~~aLl~R~~--~i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~-~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
..+.+.|..||. .|.+|++.. +++..++..++.. ....++. .. ..++++++..|.. |.|..++|.|
T Consensus 147 ~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~-~~~~~~~--~~~~~ls~~a~~~L~~-y~WPGNvrEL 222 (329)
T TIGR02974 147 ALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIR-MARELGL--PLFPGFTPQAREQLLE-YHWPGNVREL 222 (329)
T ss_pred HHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHH-HHHHhCC--CCCCCcCHHHHHHHHh-CCCCchHHHH
Confidence 368889999996 477777763 5566666655533 3333332 12 4789999988765 7888899999
Q ss_pred HHHHHHHH
Q 003349 537 ERNLAALA 544 (828)
Q Consensus 537 ~~~i~~l~ 544 (828)
++.|+.++
T Consensus 223 ~n~i~~~~ 230 (329)
T TIGR02974 223 KNVVERSV 230 (329)
T ss_pred HHHHHHHH
Confidence 98888876
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.41 E-value=1.9e-12 Score=158.05 Aligned_cols=199 Identities=22% Similarity=0.296 Sum_probs=135.5
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC----------CCeEEEecCCcCchhhh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----------RKFIRISLGGVKDEADI 382 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~----------~~~~~i~~~~~~~~~~l 382 (828)
+.++|.++.++++.+.+... ...+++|+||||||||++++.+|..+. .+++.++++....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a---- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA---- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc----
Confidence 46899999999999887532 345788999999999999999998862 4566665443221
Q ss_pred ccCcccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCC--C--ChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVR--G--DPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~--~--~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
| .+|.|..+..+...+..+.. .+.|+||||||.+..... + +..+.|...+.. ..+
T Consensus 249 -g--~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-----------------g~l 308 (821)
T CHL00095 249 -G--TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-----------------GEL 308 (821)
T ss_pred -c--CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-----------------CCc
Confidence 1 25667666677777765432 234899999999875431 1 224444444432 246
Q ss_pred EEEEecCCCC-----CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhc
Q 003349 458 IFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 532 (828)
Q Consensus 458 iiI~TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g 532 (828)
.+|++||..+ ..+++|.+||..|.++.|+.++...|++.. ...+...++ +.++++++..++....++.+
T Consensus 309 ~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l-~~~~e~~~~-----v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 309 QCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL-RSRYEKHHN-----LSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH-HHHHHHHcC-----CCCCHHHHHHHHHHhhccCc
Confidence 7888888764 578999999999999999999999888764 334444443 34899999988875555444
Q ss_pred hHHHHHHHHHHHHHH
Q 003349 533 VRNLERNLAALARAA 547 (828)
Q Consensus 533 ~R~l~~~i~~l~~~a 547 (828)
-|.+-..--.++..|
T Consensus 383 ~r~lPdkaidlld~a 397 (821)
T CHL00095 383 DRFLPDKAIDLLDEA 397 (821)
T ss_pred cccCchHHHHHHHHH
Confidence 444433333333333
No 151
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.7e-12 Score=150.97 Aligned_cols=196 Identities=20% Similarity=0.240 Sum_probs=126.9
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE---EecCCcCchhhhc-cCcc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR---ISLGGVKDEADIR-GHRR 387 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~---i~~~~~~~~~~l~-g~~~ 387 (828)
.++++||+.+++.+...+... ..++.+||+||||+|||++|+.+|+.++..... -.|+.......+. +...
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCC
Confidence 356899999999988777533 234568999999999999999999998532210 0111100000000 0000
Q ss_pred ccc--c----cCcchH---HHHHHhcC--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 388 TYI--G----SMPGRL---IDGLKRVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 388 ~~v--g----~~~g~l---~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.++ . .....+ .+.+...+ ....|+||||+|.+.... ++.|+..|+.. ..+
T Consensus 90 d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a----~naLLk~LEep---------------p~~ 150 (585)
T PRK14950 90 DVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAA----FNALLKTLEEP---------------PPH 150 (585)
T ss_pred eEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHH----HHHHHHHHhcC---------------CCC
Confidence 000 0 001122 22222222 123499999999998654 88999988742 234
Q ss_pred cEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 457 VIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
++||++++..+.+.+.+++|+..+.|..++..+...++...+. ..++.++++++..++..+.+ ..|.+
T Consensus 151 tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~----------~egl~i~~eal~~La~~s~G--dlr~a 218 (585)
T PRK14950 151 AIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAA----------AEGINLEPGALEAIARAATG--SMRDA 218 (585)
T ss_pred eEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcCC--CHHHH
Confidence 6778888888889999999999999999999998888876642 23467899999988875543 45555
Q ss_pred HHHHHHH
Q 003349 537 ERNLAAL 543 (828)
Q Consensus 537 ~~~i~~l 543 (828)
...|+.+
T Consensus 219 l~~LekL 225 (585)
T PRK14950 219 ENLLQQL 225 (585)
T ss_pred HHHHHHH
Confidence 5555554
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.39 E-value=2.4e-12 Score=157.69 Aligned_cols=200 Identities=19% Similarity=0.244 Sum_probs=131.3
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchhhh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 382 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~~l 382 (828)
+.++|+++.++++.+.+.. ....+++|+||||||||++++.+|..+ +.+++.++++....
T Consensus 173 ~~~igr~~ei~~~~~~l~r------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a---- 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSR------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA---- 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhc------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh----
Confidence 4589999998888887753 234568899999999999999999876 34455555443221
Q ss_pred ccCcccccccCcchHHHHHHhcCC--CCcEEEEecccccCCCCCC----ChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVRG----DPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~~--~~~vl~iDEid~l~~~~~~----~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
| ..|.|..+..+...+..... .+.|+||||++.+...... +..+.|...+. ...
T Consensus 243 -~--~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-----------------~g~ 302 (852)
T TIGR03346 243 -G--AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-----------------RGE 302 (852)
T ss_pred -c--chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-----------------cCc
Confidence 1 14566666667777665422 3459999999999753211 12333333322 235
Q ss_pred cEEEEecCCCC-----CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 457 VIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 457 viiI~TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
+.+|++||..+ ..+++|.+||..|.++.|+.++...|++.. ..+.-.. .++.++++++...+.-..++.
T Consensus 303 i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~-~~~~e~~-----~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 303 LHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL-KERYEVH-----HGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred eEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH-HHHhccc-----cCCCCCHHHHHHHHHhccccc
Confidence 67888888763 589999999999999999999999998764 3333222 245678888877776444444
Q ss_pred chHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAA 548 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~ 548 (828)
.-|.|-..--.++.+|+
T Consensus 377 ~~r~lPdkAidlld~a~ 393 (852)
T TIGR03346 377 TDRFLPDKAIDLIDEAA 393 (852)
T ss_pred cccCCchHHHHHHHHHH
Confidence 44444433333444433
No 153
>PRK06893 DNA replication initiation factor; Validated
Probab=99.39 E-value=2.1e-12 Score=134.26 Aligned_cols=161 Identities=17% Similarity=0.292 Sum_probs=107.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
..+.++|+||||||||+|++++|+.+. .....+++..... ...+.+... ....+++|||
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~-----------------~~~~~~~~~-~~~dlLilDD 99 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-----------------FSPAVLENL-EQQDLVCLDD 99 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh-----------------hhHHHHhhc-ccCCEEEEeC
Confidence 345689999999999999999998862 3333333321100 000112211 1245999999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC-CCCC---CccccCceE---EEEcCCCCHH
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR-AQPI---PPPLLDRME---VIELPGYTPE 488 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~-~~~l---~~aLl~R~~---~i~~~~~~~e 488 (828)
++.+..+. .....|+.+++.... ....++|.|+|. +..+ .+.|.+|+. ++.+++|+.+
T Consensus 100 i~~~~~~~--~~~~~l~~l~n~~~~-------------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e 164 (229)
T PRK06893 100 LQAVIGNE--EWELAIFDLFNRIKE-------------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDE 164 (229)
T ss_pred hhhhcCCh--HHHHHHHHHHHHHHH-------------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHH
Confidence 99986543 113467777764321 122345555554 5444 489999996 7899999999
Q ss_pred HHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 489 EKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 489 e~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
++.+|+++... ..++.++++++.+|+.++.+ .+|.+...++.+.
T Consensus 165 ~~~~iL~~~a~----------~~~l~l~~~v~~~L~~~~~~--d~r~l~~~l~~l~ 208 (229)
T PRK06893 165 QKIIVLQRNAY----------QRGIELSDEVANFLLKRLDR--DMHTLFDALDLLD 208 (229)
T ss_pred HHHHHHHHHHH----------HcCCCCCHHHHHHHHHhccC--CHHHHHHHHHHHH
Confidence 99999988753 12478999999999998875 4577777777764
No 154
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.38 E-value=1.1e-11 Score=143.70 Aligned_cols=204 Identities=17% Similarity=0.192 Sum_probs=131.5
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC----------CCeEEEecCCcCchhhh-
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----------RKFIRISLGGVKDEADI- 382 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~----------~~~~~i~~~~~~~~~~l- 382 (828)
.+.|.++-.+.|..++...... ..++..++++|+||||||++++.+.+.+. ..++.++|.....+..+
T Consensus 756 ~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4568999999999888765442 23334567999999999999999987761 34567787654443322
Q ss_pred -------ccCcccccccCc-chHHHHHHhc---CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCee
Q 003349 383 -------RGHRRTYIGSMP-GRLIDGLKRV---GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP 451 (828)
Q Consensus 383 -------~g~~~~~vg~~~-g~l~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~ 451 (828)
.+..+. -|... ..+...|... .....||+|||||.+.... +..|+.+++....
T Consensus 835 qvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----QDVLYnLFR~~~~----------- 898 (1164)
T PTZ00112 835 QVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----QKVLFTLFDWPTK----------- 898 (1164)
T ss_pred HHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----HHHHHHHHHHhhc-----------
Confidence 121111 11111 1233334332 1112389999999998754 6778888863211
Q ss_pred ecCCCcEEEEecCCC---CCCCccccCceE--EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHH
Q 003349 452 FDLSKVIFVATANRA---QPIPPPLLDRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 526 (828)
Q Consensus 452 ~~~~~viiI~TtN~~---~~l~~aLl~R~~--~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~ 526 (828)
....+++|+.+|.. +.+++.+.+||. .|.|++|+.+++..|++..+.. . ...+++++++++++.
T Consensus 899 -s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~-------A---~gVLdDdAIELIArk 967 (1164)
T PTZ00112 899 -INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN-------C---KEIIDHTAIQLCARK 967 (1164)
T ss_pred -cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh-------C---CCCCCHHHHHHHHHh
Confidence 12357899999864 477889999995 5899999999999999988632 1 135899999999884
Q ss_pred hhhhhchHHHHHHHHHHHHHHH
Q 003349 527 YTREAGVRNLERNLAALARAAA 548 (828)
Q Consensus 527 ~~~~~g~R~l~~~i~~l~~~a~ 548 (828)
.....| +.++.| .+|+.|+
T Consensus 968 VAq~SG--DARKAL-DILRrAg 986 (1164)
T PTZ00112 968 VANVSG--DIRKAL-QICRKAF 986 (1164)
T ss_pred hhhcCC--HHHHHH-HHHHHHH
Confidence 433333 333443 3444443
No 155
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.37 E-value=3e-12 Score=133.64 Aligned_cols=160 Identities=17% Similarity=0.276 Sum_probs=105.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCC---CeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecc
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGR---KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 416 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~---~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEi 416 (828)
+++++|+||||||||+|++++++.+.. ....+++.... .+ ...+.+.+.. ..+++|||+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~----------~~----~~~~~~~~~~----~dlliiDdi 106 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA----------WF----VPEVLEGMEQ----LSLVCIDNI 106 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh----------hh----hHHHHHHhhh----CCEEEEeCh
Confidence 457999999999999999999987643 23333332210 00 0122233322 258999999
Q ss_pred cccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC-CCCC---CCccccCce---EEEEcCCCCHHH
Q 003349 417 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN-RAQP---IPPPLLDRM---EVIELPGYTPEE 489 (828)
Q Consensus 417 d~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN-~~~~---l~~aLl~R~---~~i~~~~~~~ee 489 (828)
+.+..+. ..+..|+.+++.... ..++.+|+|++ ++.. +.|.|++|| .++.+.+|+.++
T Consensus 107 ~~~~~~~--~~~~~lf~l~n~~~e-------------~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 107 ECIAGDE--LWEMAIFDLYNRILE-------------SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred hhhcCCH--HHHHHHHHHHHHHHH-------------cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 9987543 124556666653211 12233455554 5443 689999999 589999999999
Q ss_pred HHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 490 KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 490 ~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
+.+++++... . .++.++++++++|+.++.+ .+|.+...++.+-
T Consensus 172 ~~~~l~~~a~-----~-----~~~~l~~~v~~~L~~~~~~--d~r~l~~~l~~l~ 214 (235)
T PRK08084 172 KLQALQLRAR-----L-----RGFELPEDVGRFLLKRLDR--EMRTLFMTLDQLD 214 (235)
T ss_pred HHHHHHHHHH-----H-----cCCCCCHHHHHHHHHhhcC--CHHHHHHHHHHHH
Confidence 9999877532 1 2478999999999998875 4566666666653
No 156
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.37 E-value=6e-12 Score=136.69 Aligned_cols=211 Identities=16% Similarity=0.223 Sum_probs=125.7
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCe-E---EEecCCcCc---hhhhccC
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF-I---RISLGGVKD---EADIRGH 385 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~-~---~i~~~~~~~---~~~l~g~ 385 (828)
..++||+++|..+...+..+ ...++||.||+|||||++|+++++.+...- . .+++..... .....+.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~ 90 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREA 90 (350)
T ss_pred HHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhh
Confidence 46889999999887655432 234789999999999999999998884211 0 001000000 0001110
Q ss_pred c------------ccc----cccCcch------HHHHHHhc----------CCCCcEEEEecccccCCCCCCChHHHHHH
Q 003349 386 R------------RTY----IGSMPGR------LIDGLKRV----------GVCNPVMLLDEIDKTGSDVRGDPASALLE 433 (828)
Q Consensus 386 ~------------~~~----vg~~~g~------l~~~~~~~----------~~~~~vl~iDEid~l~~~~~~~~~~~Ll~ 433 (828)
. ..+ .|.+... +...+... ...++++|+||++.+.+.. ++.|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~----Q~~LLe 166 (350)
T CHL00081 91 IQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHL----VDILLD 166 (350)
T ss_pred hcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHH----HHHHHH
Confidence 0 000 1112211 22222221 1235699999999999887 999999
Q ss_pred hcCcccccccccccCCeeecCCCcEEEEecCCCC-CCCccccCceE-EEEcCCCC-HHHHHHHHHHhhc----HH-HHH-
Q 003349 434 VLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-PIPPPLLDRME-VIELPGYT-PEEKLRIAMRHLI----PR-VLD- 504 (828)
Q Consensus 434 ~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-~l~~aLl~R~~-~i~~~~~~-~ee~~~Il~~~l~----~~-~~~- 504 (828)
.|++++...-.+. ...+. ...+++|+|+|+.+ .++++|++||. .+.+.+++ .+++.+|+++... +. +.+
T Consensus 167 am~e~~~~ier~G-~s~~~-p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~ 244 (350)
T CHL00081 167 SAASGWNTVEREG-ISIRH-PARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREK 244 (350)
T ss_pred HHHhCCeEEeeCC-eeeec-CCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhh
Confidence 9986542211111 11112 34688999999876 79999999998 68999887 4888888887532 10 000
Q ss_pred -------------hcCCCCcccccCHHHHHHHHHHhh--hhhchHH
Q 003349 505 -------------QHGLGSEFLQIPEAMVKLVIQRYT--REAGVRN 535 (828)
Q Consensus 505 -------------~~~~~~~~~~i~~~~l~~l~~~~~--~~~g~R~ 535 (828)
...-.-..+.+++..+.++++-+. +..|.|.
T Consensus 245 ~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra 290 (350)
T CHL00081 245 YEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRG 290 (350)
T ss_pred hccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChH
Confidence 000012357889999999887333 3344443
No 157
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.37 E-value=6.8e-12 Score=145.62 Aligned_cols=212 Identities=22% Similarity=0.337 Sum_probs=143.2
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCc---hhhhccCcc
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHRR 387 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~---~~~l~g~~~ 387 (828)
.++|++...+.+.+.+.... ..+.++||+|++|||||++|++|.... +.+++.++|..+.+ .+.+.|+.+
T Consensus 188 ~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~ 263 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVK 263 (509)
T ss_pred ceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccc
Confidence 46788888888877776532 235579999999999999999999876 46899999998754 234555433
Q ss_pred c-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC
Q 003349 388 T-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 466 (828)
Q Consensus 388 ~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~ 466 (828)
+ +.|..... ...+..+ .++.+|||||+.+++.. |..|+++++........+ ..+. ..++.+|+|||..
T Consensus 264 g~~~ga~~~~-~g~~~~a--~gGtL~ldeI~~L~~~~----Q~~Ll~~l~~~~~~~~g~---~~~~-~~~~RiI~~t~~~ 332 (509)
T PRK05022 264 GAFTGAISNR-SGKFELA--DGGTLFLDEIGELPLAL----QAKLLRVLQYGEIQRVGS---DRSL-RVDVRVIAATNRD 332 (509)
T ss_pred cccCCCcccC-Ccchhhc--CCCEEEecChhhCCHHH----HHHHHHHHhcCCEeeCCC---Ccce-ecceEEEEecCCC
Confidence 2 22221110 1123333 35699999999999887 899999997543211111 1111 2367899999875
Q ss_pred -------CCCCccccCceEE--EEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 467 -------QPIPPPLLDRMEV--IELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 467 -------~~l~~aLl~R~~~--i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
..+.+.|..|+.+ |.+|++.. ++.-.+++.++ .+...+++. ..+.++++++..|.. |.|..++|.
T Consensus 333 l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl-~~~~~~~~~--~~~~~s~~a~~~L~~-y~WPGNvrE 408 (509)
T PRK05022 333 LREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFL-EQNRARLGL--RSLRLSPAAQAALLA-YDWPGNVRE 408 (509)
T ss_pred HHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHH-HHHHHHcCC--CCCCCCHHHHHHHHh-CCCCCcHHH
Confidence 3688899999974 66676655 34444444443 344444432 346899999987665 888899999
Q ss_pred HHHHHHHHH
Q 003349 536 LERNLAALA 544 (828)
Q Consensus 536 l~~~i~~l~ 544 (828)
|++.|+..|
T Consensus 409 L~~~i~ra~ 417 (509)
T PRK05022 409 LEHVISRAA 417 (509)
T ss_pred HHHHHHHHH
Confidence 998888876
No 158
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=5.2e-12 Score=142.95 Aligned_cols=172 Identities=18% Similarity=0.293 Sum_probs=115.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEeccc
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 417 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid 417 (828)
..++|+||||+|||+|++++++.+ +..+..++...... .+... + . .+. .+.|+..-....+++|||++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~--~~~~~---l-~--~~~-~~~f~~~~~~~dvLiIDDiq 212 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE--HLVSA---I-R--SGE-MQRFRQFYRNVDALFIEDIE 212 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH--HHHHH---H-h--cch-HHHHHHHcccCCEEEEcchh
Confidence 468899999999999999999877 34555554332211 11100 0 0 011 12343333345699999999
Q ss_pred ccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC-C---CCCCccccCceE---EEEcCCCCHHHH
Q 003349 418 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR-A---QPIPPPLLDRME---VIELPGYTPEEK 490 (828)
Q Consensus 418 ~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~-~---~~l~~aLl~R~~---~i~~~~~~~ee~ 490 (828)
.+..+. ..+..|+.+++.... .+..+|+|+|. + ..+++.|++||. ++.+++|+.+++
T Consensus 213 ~l~~k~--~~qeelf~l~N~l~~--------------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r 276 (445)
T PRK12422 213 VFSGKG--ATQEEFFHTFNSLHT--------------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGL 276 (445)
T ss_pred hhcCCh--hhHHHHHHHHHHHHH--------------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHH
Confidence 986532 125667776653211 11245556654 4 367899999994 799999999999
Q ss_pred HHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q 003349 491 LRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAV 549 (828)
Q Consensus 491 ~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~ 549 (828)
..|++..+. ..++.++++++++|+.++. .++|.|...+..++...+.
T Consensus 277 ~~iL~~k~~----------~~~~~l~~evl~~la~~~~--~dir~L~g~l~~l~~~~a~ 323 (445)
T PRK12422 277 RSFLERKAE----------ALSIRIEETALDFLIEALS--SNVKSLLHALTLLAKRVAY 323 (445)
T ss_pred HHHHHHHHH----------HcCCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHH
Confidence 999988752 1247899999999999876 4788999999988754443
No 159
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.36 E-value=6.6e-12 Score=138.85 Aligned_cols=163 Identities=17% Similarity=0.245 Sum_probs=103.2
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC--C---eEEEecCCcCchhhh-ccCccc
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR--K---FIRISLGGVKDEADI-RGHRRT 388 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~--~---~~~i~~~~~~~~~~l-~g~~~~ 388 (828)
+++-+...+.+...+. .+.+++|+||||||||++|+.+|..+.. . +..+.++...+..+. .|.+..
T Consensus 177 ~~i~e~~le~l~~~L~--------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 177 LFIPETTIETILKRLT--------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred ccCCHHHHHHHHHHHh--------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC
Confidence 4455555566655443 3567999999999999999999998843 2 223444433333333 355555
Q ss_pred ccccC--cchHHHHHHhcC---CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccc-------cccccCCeeecCCC
Q 003349 389 YIGSM--PGRLIDGLKRVG---VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKT-------FNDHYLNVPFDLSK 456 (828)
Q Consensus 389 ~vg~~--~g~l~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~-------~~~~~~~~~~~~~~ 456 (828)
.+|+. .|.+.+....+. ..+.++|||||++...+. .+..++++|+...... +.......-.-..|
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k---iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~N 325 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK---VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPEN 325 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH---hhhhhhhhccccccccccceeeeccccccccccCCCC
Confidence 56654 344444444443 234599999999988543 1567788888532110 00100011122578
Q ss_pred cEEEEecCCCC----CCCccccCceEEEEcCC-CCHH
Q 003349 457 VIFVATANRAQ----PIPPPLLDRMEVIELPG-YTPE 488 (828)
Q Consensus 457 viiI~TtN~~~----~l~~aLl~R~~~i~~~~-~~~e 488 (828)
+.||+|+|..+ .+|.||+|||.+|++.+ ++.+
T Consensus 326 l~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~ 362 (459)
T PRK11331 326 VYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTP 362 (459)
T ss_pred eEEEEecCccccchhhccHHHHhhhheEEecCCCChH
Confidence 99999999987 79999999999988876 4443
No 160
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.36 E-value=6.4e-12 Score=147.13 Aligned_cols=212 Identities=21% Similarity=0.306 Sum_probs=144.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCch---hhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDE---ADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~---~~l~g~~ 386 (828)
..++|.+...+.+.+.+.... ....++||+|++|||||++|++|.... +.+|+.++|....+. +.+.|+.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~ 271 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHE 271 (534)
T ss_pred CceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCC
Confidence 357888888888887776543 234568999999999999999999876 468999999886442 3444543
Q ss_pred cc-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 387 RT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 387 ~~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
++ +.|..... ...+..+ .++++|||||+.+++.. |..|+++++..+. .......+. ..++.+|+|||.
T Consensus 272 ~~~~~~~~~~~-~g~~~~a--~~GtL~ldei~~L~~~~----Q~~Ll~~l~~~~~---~~~~~~~~~-~~~~riI~~s~~ 340 (534)
T TIGR01817 272 KGAFTGAIAQR-KGRFELA--DGGTLFLDEIGEISPAF----QAKLLRVLQEGEF---ERVGGNRTL-KVDVRLVAATNR 340 (534)
T ss_pred CCccCCCCcCC-CCccccc--CCCeEEEechhhCCHHH----HHHHHHHHhcCcE---EECCCCceE-eecEEEEEeCCC
Confidence 32 11211100 0112222 35699999999999887 8999999985432 111111111 235678888886
Q ss_pred C-------CCCCccccCceE--EEEcCCCC--HHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchH
Q 003349 466 A-------QPIPPPLLDRME--VIELPGYT--PEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 534 (828)
Q Consensus 466 ~-------~~l~~aLl~R~~--~i~~~~~~--~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R 534 (828)
. ..+.+.|..|+. .|.+|++. .++...++..++.. ...+++. . +.++++++..|.. |.|..++|
T Consensus 341 ~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~-~~~~~~~--~-~~~s~~a~~~L~~-~~WPGNvr 415 (534)
T TIGR01817 341 DLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEK-FNRENGR--P-LTITPSAIRVLMS-CKWPGNVR 415 (534)
T ss_pred CHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHH-HHHHcCC--C-CCCCHHHHHHHHh-CCCCChHH
Confidence 5 378889999996 47888887 36666777666543 3333332 2 6899999988766 77888999
Q ss_pred HHHHHHHHHH
Q 003349 535 NLERNLAALA 544 (828)
Q Consensus 535 ~l~~~i~~l~ 544 (828)
.|++.++.++
T Consensus 416 EL~~v~~~a~ 425 (534)
T TIGR01817 416 ELENCLERTA 425 (534)
T ss_pred HHHHHHHHHH
Confidence 9998888766
No 161
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.35 E-value=3.6e-11 Score=134.43 Aligned_cols=214 Identities=17% Similarity=0.160 Sum_probs=128.6
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---------CCeEEEecCCcCchhhhc-
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---------RKFIRISLGGVKDEADIR- 383 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---------~~~~~i~~~~~~~~~~l~- 383 (828)
.++|.++.++.+..++..... ...+.+++++||||||||++++.+++.+. ..+..++|....+...+.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 578999999999888765332 23456789999999999999999998763 245667776544432221
Q ss_pred ---------cCcccccccCcchHHH-HHHhc--CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCee
Q 003349 384 ---------GHRRTYIGSMPGRLID-GLKRV--GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP 451 (828)
Q Consensus 384 ---------g~~~~~vg~~~g~l~~-~~~~~--~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~ 451 (828)
+......|.....+.. .+... .....|++|||+|.+.... ...|.++++-... . .
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----~~~L~~l~~~~~~----~-----~ 160 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----DDLLYQLSRARSN----G-----D 160 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----cHHHHhHhccccc----c-----C
Confidence 1110111111112212 22211 1123489999999997332 2344444431000 0 0
Q ss_pred ecCCCcEEEEecCCCC---CCCccccCceE--EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHH
Q 003349 452 FDLSKVIFVATANRAQ---PIPPPLLDRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 526 (828)
Q Consensus 452 ~~~~~viiI~TtN~~~---~l~~aLl~R~~--~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~ 526 (828)
....++.+|+++|.++ .+++.+.+||. .+.|++|+.+++.+|++..+... .. ...++++++..++..
T Consensus 161 ~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~------~~--~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 161 LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA------FY--DGVLDDGVIPLCAAL 232 (365)
T ss_pred CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh------cc--CCCCChhHHHHHHHH
Confidence 1124678899999875 68888999994 69999999999999999875311 11 124788888877664
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHH
Q 003349 527 YTREAGVRNLERNLAALARAAAVKVAE 553 (828)
Q Consensus 527 ~~~~~g~R~l~~~i~~l~~~a~~~~l~ 553 (828)
.....| ++ |.+..+|+.|+..+..
T Consensus 233 ~~~~~G--d~-R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 233 AAQEHG--DA-RKAIDLLRVAGEIAER 256 (365)
T ss_pred HHHhcC--CH-HHHHHHHHHHHHHHHH
Confidence 433223 11 3444566666554443
No 162
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.35 E-value=4.2e-12 Score=143.69 Aligned_cols=172 Identities=20% Similarity=0.296 Sum_probs=114.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh-----CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEe
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLD 414 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l-----~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iD 414 (828)
...++|+||||+|||+|++++++.+ +..++.+++..... .+..... ......+.+.++. ..+|+||
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~--~~~~~~~---~~~~~~~~~~~~~----~dlLiiD 206 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN--DFVNALR---NNKMEEFKEKYRS----VDLLLID 206 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH--HHHHHHH---cCCHHHHHHHHHh----CCEEEEe
Confidence 3468899999999999999999887 34455555443211 1110000 0011122223322 3599999
Q ss_pred cccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC-CCC---CCCccccCceE---EEEcCCCCH
Q 003349 415 EIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN-RAQ---PIPPPLLDRME---VIELPGYTP 487 (828)
Q Consensus 415 Eid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN-~~~---~l~~aLl~R~~---~i~~~~~~~ 487 (828)
|++.+.... ..+..|+.+++..... +..+|+|+| .+. .+++.+.+||. .+.|++|+.
T Consensus 207 Di~~l~~~~--~~~~~l~~~~n~~~~~--------------~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 207 DIQFLAGKE--RTQEEFFHTFNALHEN--------------GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred hhhhhcCCH--HHHHHHHHHHHHHHHC--------------CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCH
Confidence 999987542 1256677777643211 123445555 443 57789999995 699999999
Q ss_pred HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 003349 488 EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAA 548 (828)
Q Consensus 488 ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~ 548 (828)
+++..|++..+.. .++.++++++++|+.++.+ .+|.|+..|..++..+.
T Consensus 271 ~~r~~il~~~~~~----------~~~~l~~e~l~~ia~~~~~--~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 271 ETRLAILQKKAEE----------EGLELPDEVLEFIAKNIRS--NVRELEGALNRLLAYAS 319 (405)
T ss_pred HHHHHHHHHHHHH----------cCCCCCHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 9999999987531 2478999999999987764 56889899988886543
No 163
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.34 E-value=1.3e-11 Score=135.04 Aligned_cols=214 Identities=19% Similarity=0.293 Sum_probs=143.3
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCch---hhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDE---ADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~~---~~l~g~~ 386 (828)
++++|.+...+.+.+.+.... ..+.+++|+|++||||+++|++|..... .+|+.++|....+. ..+.|+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~ 81 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE 81 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHcccc
Confidence 457888888888888776543 2345689999999999999999987653 58999999986432 2344443
Q ss_pred cc-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 387 RT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 387 ~~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
.. +.|..... ...+..+ .++.+|||||+.+.... |..|+++++...... .....+. ..++.+|+||+.
T Consensus 82 ~~~~~g~~~~~-~g~l~~a--~gGtL~l~~i~~L~~~~----Q~~L~~~l~~~~~~~---~g~~~~~-~~~~RiI~~s~~ 150 (326)
T PRK11608 82 AGAFTGAQKRH-PGRFERA--DGGTLFLDELATAPMLV----QEKLLRVIEYGELER---VGGSQPL-QVNVRLVCATNA 150 (326)
T ss_pred ccccCCccccc-CCchhcc--CCCeEEeCChhhCCHHH----HHHHHHHHhcCcEEe---CCCCcee-eccEEEEEeCch
Confidence 22 12221111 1223333 35699999999999887 899999997543211 1111111 235788998887
Q ss_pred C-------CCCCccccCceE--EEEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchH
Q 003349 466 A-------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 534 (828)
Q Consensus 466 ~-------~~l~~aLl~R~~--~i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R 534 (828)
. ..+.+.|..||. .|.+|++.. +++..++..++.. ....++.. ....++++++..|.. |.+..++|
T Consensus 151 ~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~-~~~~~~~~-~~~~~s~~al~~L~~-y~WPGNvr 227 (326)
T PRK11608 151 DLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQ-MCRELGLP-LFPGFTERARETLLN-YRWPGNIR 227 (326)
T ss_pred hHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHH-HHHHhCCC-CCCCCCHHHHHHHHh-CCCCcHHH
Confidence 5 478899999995 578888766 5556666665533 33333221 114689999987665 78888999
Q ss_pred HHHHHHHHHH
Q 003349 535 NLERNLAALA 544 (828)
Q Consensus 535 ~l~~~i~~l~ 544 (828)
.|++.++..+
T Consensus 228 EL~~vl~~a~ 237 (326)
T PRK11608 228 ELKNVVERSV 237 (326)
T ss_pred HHHHHHHHHH
Confidence 9998888776
No 164
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.34 E-value=6e-12 Score=137.46 Aligned_cols=215 Identities=19% Similarity=0.286 Sum_probs=144.3
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----CCCeEEEecCCcCch---hhhcc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLGGVKDE---ADIRG 384 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----~~~~~~i~~~~~~~~---~~l~g 384 (828)
..+++|.+...+++++.+.. -...+.++|++|++||||+.+|++|.... ..||+.+||+.+... +.+.|
T Consensus 77 ~~~LIG~~~~~~~~~eqik~----~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG 152 (403)
T COG1221 77 LDDLIGESPSLQELREQIKA----YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFG 152 (403)
T ss_pred hhhhhccCHHHHHHHHHHHh----hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhc
Confidence 34577888888888887765 12566789999999999999999998544 458999999987543 34555
Q ss_pred Cccc-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEec
Q 003349 385 HRRT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA 463 (828)
Q Consensus 385 ~~~~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt 463 (828)
+.++ |.|.. +.-...|..+. .+.+|+|||..+.+.. |..|+++||++......++ .....++.+|++|
T Consensus 153 ~~kGaftGa~-~~k~Glfe~A~--GGtLfLDEI~~LP~~~----Q~kLl~~le~g~~~rvG~~----~~~~~dVRli~AT 221 (403)
T COG1221 153 HEKGAFTGAQ-GGKAGLFEQAN--GGTLFLDEIHRLPPEG----QEKLLRVLEEGEYRRVGGS----QPRPVDVRLICAT 221 (403)
T ss_pred cccceeeccc-CCcCchheecC--CCEEehhhhhhCCHhH----HHHHHHHHHcCceEecCCC----CCcCCCceeeecc
Confidence 5443 33422 22233454443 5699999999999988 9999999998765543331 1224467788877
Q ss_pred CCC--CCCCc--cccCceE--EEEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 464 NRA--QPIPP--PLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 464 N~~--~~l~~--aLl~R~~--~i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
|.. +.+-. .|.+|.. +|.+|++.. +++..+++.++ .....+.+.. -...+++++..+.. |++..++|.
T Consensus 222 ~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl-~~~~~~l~~~--~~~~~~~a~~~L~~-y~~pGNirE 297 (403)
T COG1221 222 TEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFL-KSEARRLGLP--LSVDSPEALRALLA-YDWPGNIRE 297 (403)
T ss_pred ccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHH-HHHHHHcCCC--CCCCCHHHHHHHHh-CCCCCcHHH
Confidence 643 34444 7777553 678887766 33333444444 4444444443 22334577776554 888899999
Q ss_pred HHHHHHHHHH
Q 003349 536 LERNLAALAR 545 (828)
Q Consensus 536 l~~~i~~l~~ 545 (828)
|++.++.+|-
T Consensus 298 LkN~Ve~~~~ 307 (403)
T COG1221 298 LKNLVERAVA 307 (403)
T ss_pred HHHHHHHHHH
Confidence 9999999983
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.34 E-value=2.7e-12 Score=126.44 Aligned_cols=168 Identities=18% Similarity=0.270 Sum_probs=118.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh-CCC----eEEEecCCcCchhhhccCcc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-GRK----FIRISLGGVKDEADIRGHRR 387 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l-~~~----~~~i~~~~~~~~~~l~g~~~ 387 (828)
.+++|.++..+++..+... ..-|+++|.|||||||||.+.++|+.+ |.. +..++.|+.......
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvV----- 95 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVV----- 95 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHH-----
Confidence 4688999999998766542 345789999999999999999999876 422 234444442221111
Q ss_pred cccccCcchHHHHHHhcCC-----CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEe
Q 003349 388 TYIGSMPGRLIDGLKRVGV-----CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVAT 462 (828)
Q Consensus 388 ~~vg~~~g~l~~~~~~~~~-----~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~T 462 (828)
..-...|..... ...|+++||.|.+.... |.+|.+.|+=. .+.+.|..+
T Consensus 96 -------Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA----QQAlRRtMEiy---------------S~ttRFala 149 (333)
T KOG0991|consen 96 -------RNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA----QQALRRTMEIY---------------SNTTRFALA 149 (333)
T ss_pred -------HHHHHHHHHhhccCCCCceeEEEeeccchhhhHH----HHHHHHHHHHH---------------cccchhhhh
Confidence 112233333222 23399999999998766 88888888621 334679999
Q ss_pred cCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHh
Q 003349 463 ANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 527 (828)
Q Consensus 463 tN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~ 527 (828)
+|..+.+-+++.+||.++.|..++..+...-+.... ..+++.++++.++.++-..
T Consensus 150 CN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~----------k~Ekv~yt~dgLeaiifta 204 (333)
T KOG0991|consen 150 CNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVA----------KAEKVNYTDDGLEAIIFTA 204 (333)
T ss_pred hcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHH----------HHhCCCCCcchHHHhhhhc
Confidence 999999999999999999999999977655444332 1345788999999988533
No 166
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.34 E-value=1.5e-11 Score=133.67 Aligned_cols=201 Identities=15% Similarity=0.161 Sum_probs=120.0
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh------------
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA------------ 380 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~------------ 380 (828)
..++||+++|..+.-.+.. +...++++.|+||+||||++++++..+..--..+.+....++.
T Consensus 4 ~~ivgq~~~~~al~~~~~~------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 77 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIR 77 (337)
T ss_pred cccccHHHHHHHHHHHhcC------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhh
Confidence 3588999999887654432 2345799999999999999999999983211111110000000
Q ss_pred --------------hhccCcc-----cccccCcchHHHHHHh-------c---CCCCcEEEEecccccCCCCCCChHHHH
Q 003349 381 --------------DIRGHRR-----TYIGSMPGRLIDGLKR-------V---GVCNPVMLLDEIDKTGSDVRGDPASAL 431 (828)
Q Consensus 381 --------------~l~g~~~-----~~vg~~~g~l~~~~~~-------~---~~~~~vl~iDEid~l~~~~~~~~~~~L 431 (828)
.+...+. .++|.. .+...+.. . ...++++|+||++.+.+.. ++.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~----Q~~L 151 (337)
T TIGR02030 78 VDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHL----VDVL 151 (337)
T ss_pred hhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHH----HHHH
Confidence 0000000 112221 11111111 0 1234699999999998877 8999
Q ss_pred HHhcCcccccccccccCCeeecCCCcEEEEecCCCC-CCCccccCceE-EEEcCCCCH-HHHHHHHHHhhcH--------
Q 003349 432 LEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-PIPPPLLDRME-VIELPGYTP-EEKLRIAMRHLIP-------- 500 (828)
Q Consensus 432 l~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-~l~~aLl~R~~-~i~~~~~~~-ee~~~Il~~~l~~-------- 500 (828)
++.|+.++.....+. ...+. ..++++|+|+|+.+ .++++|++||. .+.+++++. +++.+|++.....
T Consensus 152 l~~l~~g~~~v~r~G-~~~~~-~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~ 229 (337)
T TIGR02030 152 LDVAASGWNVVEREG-ISIRH-PARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFC 229 (337)
T ss_pred HHHHHhCCeEEEECC-EEEEc-CCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhh
Confidence 999986532111111 11122 24688999999766 79999999997 588888876 8888888773210
Q ss_pred -----------HHHHhcCCCCcccccCHHHHHHHHHHh
Q 003349 501 -----------RVLDQHGLGSEFLQIPEAMVKLVIQRY 527 (828)
Q Consensus 501 -----------~~~~~~~~~~~~~~i~~~~l~~l~~~~ 527 (828)
.......-.-..+.++++++.++++-+
T Consensus 230 ~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~ 267 (337)
T TIGR02030 230 EKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELC 267 (337)
T ss_pred hhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 000000001235778999999988843
No 167
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.33 E-value=3.3e-12 Score=146.32 Aligned_cols=171 Identities=18% Similarity=0.286 Sum_probs=112.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhC-----CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~-----~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
..++|+||||||||+|++++++.+. ..+..+++..... .+... +.......+.+.++ ...+|+|||
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~--~~~~~---~~~~~~~~~~~~~~----~~dlLiiDD 219 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN--DFVNA---LRNNTMEEFKEKYR----SVDVLLIDD 219 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH--HHHHH---HHcCcHHHHHHHHh----cCCEEEEeh
Confidence 4688999999999999999999873 3344555443211 11100 00000112222222 245999999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC---CCCccccCceE---EEEcCCCCHHH
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRME---VIELPGYTPEE 489 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~---~l~~aLl~R~~---~i~~~~~~~ee 489 (828)
++.+..+. ..+..|+.+++..... ...++|++.+.+. .+++.|.+||. ++.|.+|+.++
T Consensus 220 i~~l~~~~--~~~~~l~~~~n~l~~~-------------~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 220 IQFLAGKE--RTQEEFFHTFNALHEA-------------GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET 284 (450)
T ss_pred hhhhcCCH--HHHHHHHHHHHHHHHC-------------CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence 99986542 1256777777643211 1224444444443 37799999994 79999999999
Q ss_pred HHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 003349 490 KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAA 547 (828)
Q Consensus 490 ~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a 547 (828)
+.+|++..+.. .++.++++++++|+.++.+ .+|.|...|..+...+
T Consensus 285 r~~il~~~~~~----------~~~~l~~e~l~~ia~~~~~--~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 285 RIAILKKKAEE----------EGIDLPDEVLEFIAKNITS--NVRELEGALNRLIAYA 330 (450)
T ss_pred HHHHHHHHHHH----------cCCCCCHHHHHHHHcCcCC--CHHHHHHHHHHHHHHH
Confidence 99999987531 2478999999999998764 5688888888876543
No 168
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=8.4e-12 Score=143.23 Aligned_cols=170 Identities=20% Similarity=0.312 Sum_probs=115.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhC-----CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecc
Q 003349 342 VLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 416 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~-----~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEi 416 (828)
.++|||++|+|||+|++++++.+. ..+..+++..+.. .+ +..........|+..-....+|+||||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~--el-------~~al~~~~~~~f~~~y~~~DLLlIDDI 386 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN--EF-------INSIRDGKGDSFRRRYREMDILLVDDI 386 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH--HH-------HHHHHhccHHHHHHHhhcCCEEEEehh
Confidence 488999999999999999999873 3444454433221 11 111001111223322223469999999
Q ss_pred cccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC----CCCCccccCceE---EEEcCCCCHHH
Q 003349 417 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA----QPIPPPLLDRME---VIELPGYTPEE 489 (828)
Q Consensus 417 d~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~----~~l~~aLl~R~~---~i~~~~~~~ee 489 (828)
+.+..+. ..+..|+.+++..... +..+|+|+|.+ ..+++.|.+||. ++.+..|+.+.
T Consensus 387 q~l~gke--~tqeeLF~l~N~l~e~--------------gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~Et 450 (617)
T PRK14086 387 QFLEDKE--STQEEFFHTFNTLHNA--------------NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELET 450 (617)
T ss_pred ccccCCH--HHHHHHHHHHHHHHhc--------------CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHH
Confidence 9987543 1256778887754221 12355677765 367899999995 68999999999
Q ss_pred HHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 003349 490 KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAA 548 (828)
Q Consensus 490 ~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~ 548 (828)
|.+|+++.+. ..++.++++++++|+.++.+ ++|.|+..|.++...+.
T Consensus 451 R~aIL~kka~----------~r~l~l~~eVi~yLa~r~~r--nvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 451 RIAILRKKAV----------QEQLNAPPEVLEFIASRISR--NIRELEGALIRVTAFAS 497 (617)
T ss_pred HHHHHHHHHH----------hcCCCCCHHHHHHHHHhccC--CHHHHHHHHHHHHHHHH
Confidence 9999998752 23578999999999998865 57899988888875443
No 169
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.32 E-value=1.4e-11 Score=141.67 Aligned_cols=212 Identities=19% Similarity=0.299 Sum_probs=140.0
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHH-----------hCCCeEEEecCCcCc---
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASA-----------LGRKFIRISLGGVKD--- 378 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~-----------l~~~~~~i~~~~~~~--- 378 (828)
.+++|.+...+.+.+.+.... ....++|++|+|||||+++|++|-.. -+.+|+.++|+.+.+
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~ll 294 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLL 294 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhH
Confidence 458899988888888775432 23457999999999999999999887 356899999998654
Q ss_pred hhhhccCccc-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 379 EADIRGHRRT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 379 ~~~l~g~~~~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
.+.+.|+..+ +.|...+.-...|..+ .++.||||||+.+++.. |..|+++|++.+...... ..++ ..++
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A--~gGTLfLdeI~~Lp~~~----Q~kLl~~L~e~~~~r~G~---~~~~-~~dv 364 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIA--HGGTLFLDEIGEMPLPL----QTRLLRVLEEKEVTRVGG---HQPV-PVDV 364 (538)
T ss_pred HHHhcCCccccccCccccccCCchhcc--CCCEEEEcChHhCCHHH----HHHHHhhhhcCeEEecCC---Ccee-ccce
Confidence 2345554322 1222111111223333 36799999999999887 999999998654322211 1112 2356
Q ss_pred EEEEecCCC-------CCCCccccCceEE--EEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHH-----
Q 003349 458 IFVATANRA-------QPIPPPLLDRMEV--IELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVK----- 521 (828)
Q Consensus 458 iiI~TtN~~-------~~l~~aLl~R~~~--i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~----- 521 (828)
.+|++||.. ..+.+.|..|+.. |.+|++.. ++...++..++.. ..... +..++++++.
T Consensus 365 RiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~-~~~~~-----~~~~~~~a~~~~~~a 438 (538)
T PRK15424 365 RVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQ-SLAAL-----SAPFSAALRQGLQQC 438 (538)
T ss_pred EEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHH-HHHHc-----CCCCCHHHHHhhHHH
Confidence 789988865 2577788889874 66666655 4455556555532 22222 2346776663
Q ss_pred -HHHHHhhhhhchHHHHHHHHHHH
Q 003349 522 -LVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 522 -~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
.+...|.|..++|.|++.+++++
T Consensus 439 ~~~L~~y~WPGNvREL~nvier~~ 462 (538)
T PRK15424 439 ETLLLHYDWPGNVRELRNLMERLA 462 (538)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHH
Confidence 34457889999999999998877
No 170
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.31 E-value=3.5e-11 Score=125.18 Aligned_cols=170 Identities=15% Similarity=0.229 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcc
Q 003349 319 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPG 395 (828)
Q Consensus 319 ~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g 395 (828)
+.+...+.++.. ......+++|+||||||||++|+++++.+ +.++..+++.....
T Consensus 26 ~~~~~~l~~~~~-----~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~----------------- 83 (227)
T PRK08903 26 AELVARLRELAA-----GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL----------------- 83 (227)
T ss_pred HHHHHHHHHHHh-----ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH-----------------
Confidence 445555555433 11345679999999999999999999876 44555555443211
Q ss_pred hHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC---CCCcc
Q 003349 396 RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPP 472 (828)
Q Consensus 396 ~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~---~l~~a 472 (828)
.+.. .....+++|||++.+.+.. +..|+.+++.... ....++++|++.+. .+.+.
T Consensus 84 ----~~~~-~~~~~~liiDdi~~l~~~~----~~~L~~~~~~~~~-------------~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 84 ----AFDF-DPEAELYAVDDVERLDDAQ----QIALFNLFNRVRA-------------HGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred ----HHhh-cccCCEEEEeChhhcCchH----HHHHHHHHHHHHH-------------cCCcEEEEeCCCCHHhCCCCHH
Confidence 0111 1124599999999987654 7788888864221 11234555655432 46688
Q ss_pred ccCce---EEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 473 LLDRM---EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 473 Ll~R~---~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
|.+|| ..+.+++|+.++...++.... .. .++.++++++++|+..+ ..++|.+.+.++.+-
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~-----~~-----~~v~l~~~al~~L~~~~--~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAA-----AE-----RGLQLADEVPDYLLTHF--RRDMPSLMALLDALD 204 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHH
Confidence 88898 479999999988888777543 11 24789999999999854 456788888887754
No 171
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.31 E-value=3e-11 Score=139.87 Aligned_cols=177 Identities=21% Similarity=0.259 Sum_probs=111.5
Q ss_pred HHHHHhhcccccchHHHHHHHHHHHHHhhhCC------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE----ecC
Q 003349 305 KAAKERLDSDHYGLVRVKQRIIEYLAVRKLKP------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI----SLG 374 (828)
Q Consensus 305 ~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i----~~~ 374 (828)
..+...+...++|++.+|..+.-.+....... -....++||+|+||||||++|+.+++...+..+.. ++.
T Consensus 195 ~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~ 274 (509)
T smart00350 195 ERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAV 274 (509)
T ss_pred HHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcC
Confidence 44556677889999999888876654321110 01123899999999999999999999886543211 111
Q ss_pred CcCchhhhccCccccccc---CcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCee
Q 003349 375 GVKDEADIRGHRRTYIGS---MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP 451 (828)
Q Consensus 375 ~~~~~~~l~g~~~~~vg~---~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~ 451 (828)
+... ..... ...|. ..|. +.. ..+++++|||++++.+.. ++.|++.|+..+.. +.. .|..
T Consensus 275 ~l~~-~~~~~---~~~g~~~~~~G~----l~~--A~~Gil~iDEi~~l~~~~----q~~L~e~me~~~i~-i~k--~G~~ 337 (509)
T smart00350 275 GLTA-AVTRD---PETREFTLEGGA----LVL--ADNGVCCIDEFDKMDDSD----RTAIHEAMEQQTIS-IAK--AGIT 337 (509)
T ss_pred Cccc-cceEc---cCcceEEecCcc----EEe--cCCCEEEEechhhCCHHH----HHHHHHHHhcCEEE-EEe--CCEE
Confidence 1111 00000 00111 0111 111 235699999999998876 89999999854321 111 1222
Q ss_pred ec-CCCcEEEEecCCCC-------------CCCccccCceE-E-EEcCCCCHHHHHHHHHHhh
Q 003349 452 FD-LSKVIFVATANRAQ-------------PIPPPLLDRME-V-IELPGYTPEEKLRIAMRHL 498 (828)
Q Consensus 452 ~~-~~~viiI~TtN~~~-------------~l~~aLl~R~~-~-i~~~~~~~ee~~~Il~~~l 498 (828)
.. ..++.+|+|+|+.+ .|+++++|||+ + +..+.++.+...+|+++.+
T Consensus 338 ~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 338 TTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 21 34789999999863 69999999998 3 5567788888788877643
No 172
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.30 E-value=2.7e-11 Score=139.51 Aligned_cols=212 Identities=23% Similarity=0.312 Sum_probs=142.3
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCc---hhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~---~~~l~g~~ 386 (828)
.+++|.+...+.+.+.+.... ....++|++|++||||+++|++|.... +.+|+.++|....+ .+.+.|+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~ 287 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYE 287 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCc
Confidence 458899998888888775432 234579999999999999999998765 46899999998654 23455543
Q ss_pred cc-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 387 RT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 387 ~~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
.+ +.|...+.-...|..+ .++.+|||||+.++... |..|+++|++.+.....+ ..+. ..++.+|+|||.
T Consensus 288 ~gaftga~~~~~~Gl~e~A--~gGTLfLdeI~~Lp~~~----Q~~Ll~~L~~~~~~r~g~---~~~~-~~dvRiIaat~~ 357 (526)
T TIGR02329 288 EGAFTGARRGGRTGLIEAA--HRGTLFLDEIGEMPLPL----QTRLLRVLEEREVVRVGG---TEPV-PVDVRVVAATHC 357 (526)
T ss_pred ccccccccccccccchhhc--CCceEEecChHhCCHHH----HHHHHHHHhcCcEEecCC---Ccee-eecceEEeccCC
Confidence 22 1222111111223333 35699999999999887 999999998654322211 1111 225678888887
Q ss_pred C-------CCCCccccCceE--EEEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHH------HHHHhh
Q 003349 466 A-------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKL------VIQRYT 528 (828)
Q Consensus 466 ~-------~~l~~aLl~R~~--~i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~------l~~~~~ 528 (828)
. ..+.+.|..|+. .|.+||+.. ++...++..++.. ..... .+.++++++.. ....|.
T Consensus 358 ~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~-~~~~~-----~~~~~~~a~~~~~~~~~~L~~y~ 431 (526)
T TIGR02329 358 ALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQ-AAAAL-----RLPDSEAAAQVLAGVADPLQRYP 431 (526)
T ss_pred CHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHH-HHHHc-----CCCCCHHHHHHhHHHHHHHHhCC
Confidence 5 267778888986 477777766 5555566666543 22222 24588888766 144688
Q ss_pred hhhchHHHHHHHHHHH
Q 003349 529 REAGVRNLERNLAALA 544 (828)
Q Consensus 529 ~~~g~R~l~~~i~~l~ 544 (828)
|..++|.|++.+++++
T Consensus 432 WPGNvrEL~nvier~~ 447 (526)
T TIGR02329 432 WPGNVRELRNLVERLA 447 (526)
T ss_pred CCchHHHHHHHHHHHH
Confidence 9999999999998877
No 173
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.29 E-value=2.8e-11 Score=125.79 Aligned_cols=176 Identities=19% Similarity=0.314 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCchhhhccCcccccccC
Q 003349 317 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSM 393 (828)
Q Consensus 317 G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vg~~ 393 (828)
+.+.+++.+..++. ...+.+++|+||||||||++|+++++.+. .++..++++......
T Consensus 21 ~~~~~~~~l~~~~~------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAA------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------------- 81 (226)
T ss_pred CcHHHHHHHHHHHh------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-------------
Confidence 45566666666543 13456899999999999999999998773 456666665532210
Q ss_pred cchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-CCC--C
Q 003349 394 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-QPI--P 470 (828)
Q Consensus 394 ~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-~~l--~ 470 (828)
..+...+. ...+++|||++.+.... +.+..|+.+++.... .+..+|+|+|.. ..+ .
T Consensus 82 -~~~~~~~~----~~~lLvIDdi~~l~~~~--~~~~~L~~~l~~~~~--------------~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 82 -PEVLEGLE----QADLVCLDDVEAIAGQP--EWQEALFHLYNRVRE--------------AGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred -HHHHhhcc----cCCEEEEeChhhhcCCh--HHHHHHHHHHHHHHH--------------cCCeEEEECCCChHHCCcc
Confidence 01111111 23599999999987532 115667777653211 112455666643 332 2
Q ss_pred -ccccCceE---EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 471 -PPLLDRME---VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 471 -~aLl~R~~---~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
+.|.+||. .|.+++|+.+++..+++.++. ..++.++++++..|+.. +..+.|.|++.++.+-
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~----------~~~~~~~~~~l~~L~~~--~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA----------RRGLQLPDEVADYLLRH--GSRDMGSLMALLDALD 206 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHh--ccCCHHHHHHHHHHHH
Confidence 77888884 699999999999999876532 12467999999999984 4457788888887755
No 174
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.29 E-value=1.8e-12 Score=129.30 Aligned_cols=162 Identities=25% Similarity=0.311 Sum_probs=74.3
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCcCchhh------hcc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEAD------IRG 384 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~~~~~~------l~g 384 (828)
.+|+||+.+|+.+.-..+ .+.++||+||||||||++|+.+...+..--. .+..+.+.+... +..
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~ 74 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIR 74 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceec
Confidence 578999999999876554 2468999999999999999999998843111 111111111111 000
Q ss_pred CcccccccCcchHHHHHHh----------cCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecC
Q 003349 385 HRRTYIGSMPGRLIDGLKR----------VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~----------~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
. +.|..-....-...+.. +...++|+|+||+..+.+.. .+.|++.|+.+........ ......
T Consensus 75 ~-~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~v----ld~Lr~ple~g~v~i~R~~--~~~~~P 147 (206)
T PF01078_consen 75 Q-RPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSV----LDALRQPLEDGEVTISRAG--GSVTYP 147 (206)
T ss_dssp ----EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHH----HHHHHHHHHHSBEEEEETT--EEEEEB
T ss_pred C-CCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHH----HHHHHHHHHCCeEEEEECC--ceEEEe
Confidence 0 00100000000011100 11246799999999998776 8999999987654332221 112235
Q ss_pred CCcEEEEecCCC-----------------------CCCCccccCceE-EEEcCCCCHHH
Q 003349 455 SKVIFVATANRA-----------------------QPIPPPLLDRME-VIELPGYTPEE 489 (828)
Q Consensus 455 ~~viiI~TtN~~-----------------------~~l~~aLl~R~~-~i~~~~~~~ee 489 (828)
.++.+|+|+|+- ..++.+|+|||| .+.++..+.++
T Consensus 148 a~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 148 ARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp --EEEEEEE-S------------------------------------------------
T ss_pred cccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 678999999974 278999999999 48888776553
No 175
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.28 E-value=4e-11 Score=139.26 Aligned_cols=214 Identities=17% Similarity=0.286 Sum_probs=140.9
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCc---hhhhccC
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGH 385 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~---~~~l~g~ 385 (828)
.++++|.+...+++.+.+..... ....++|+|++||||+++|+++.... ..+|+.++|....+ .+.+.|.
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~ 278 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGH 278 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCC
Confidence 34688888888888777654322 34568999999999999999987665 35889999998654 2344443
Q ss_pred cc-cccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC
Q 003349 386 RR-TYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN 464 (828)
Q Consensus 386 ~~-~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN 464 (828)
.. .|.|...+. ...|..+ .++.+|||||+.+++.. |..|+++++......... .... ..++.||+||+
T Consensus 279 ~~~~~~~~~~~~-~g~~e~a--~~GtL~LdeI~~L~~~~----Q~~Ll~~l~~~~~~~~g~---~~~~-~~~vRiI~st~ 347 (520)
T PRK10820 279 APGAYPNALEGK-KGFFEQA--NGGSVLLDEIGEMSPRM----QAKLLRFLNDGTFRRVGE---DHEV-HVDVRVICATQ 347 (520)
T ss_pred CCCCcCCcccCC-CChhhhc--CCCEEEEeChhhCCHHH----HHHHHHHHhcCCcccCCC---Ccce-eeeeEEEEecC
Confidence 32 122221111 1123333 25699999999999887 899999997543221111 1111 23567888887
Q ss_pred CC-------CCCCccccCceE--EEEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 465 RA-------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 465 ~~-------~~l~~aLl~R~~--~i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
.. ..+.+.|..|+. .|.+|++.. +++..++..++ .+...+++.. ...++++++..|.. |.|..++
T Consensus 348 ~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl-~~~~~~~g~~--~~~ls~~a~~~L~~-y~WPGNv 423 (520)
T PRK10820 348 KNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFV-ARFADEQGVP--RPKLAADLNTVLTR-YGWPGNV 423 (520)
T ss_pred CCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHH-HHHHHHcCCC--CCCcCHHHHHHHhc-CCCCCHH
Confidence 65 368888999986 477777766 34444554444 3344444432 35799999988765 7788899
Q ss_pred HHHHHHHHHHH
Q 003349 534 RNLERNLAALA 544 (828)
Q Consensus 534 R~l~~~i~~l~ 544 (828)
|.|++.|.+.+
T Consensus 424 reL~nvl~~a~ 434 (520)
T PRK10820 424 RQLKNAIYRAL 434 (520)
T ss_pred HHHHHHHHHHH
Confidence 99998887766
No 176
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.27 E-value=5.2e-11 Score=120.10 Aligned_cols=156 Identities=22% Similarity=0.336 Sum_probs=99.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC--eEEEecCCcCchhhhc-cCcccc-----ccc-C-cchH---HHHHHhcC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK--FIRISLGGVKDEADIR-GHRRTY-----IGS-M-PGRL---IDGLKRVG 405 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~--~~~i~~~~~~~~~~l~-g~~~~~-----vg~-~-~g~l---~~~~~~~~ 405 (828)
.++.+||+||||+|||++|+.+++.+... .....|........+. +....+ .+. . ...+ .+.+...+
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 34579999999999999999999987432 0000000000000000 000000 000 0 1123 23333322
Q ss_pred C--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcC
Q 003349 406 V--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELP 483 (828)
Q Consensus 406 ~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~ 483 (828)
. ...|++|||+|++.... ++.|+..|+.. ..++.||+++|....+.+++++|+.++.|+
T Consensus 93 ~~~~~kviiide~~~l~~~~----~~~Ll~~le~~---------------~~~~~~il~~~~~~~l~~~i~sr~~~~~~~ 153 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEAA----ANALLKTLEEP---------------PPNTLFILITPSPEKLLPTIRSRCQVLPFP 153 (188)
T ss_pred ccCCeEEEEEechhhhCHHH----HHHHHHHhcCC---------------CCCeEEEEEECChHhChHHHHhhcEEeeCC
Confidence 2 23499999999998765 88999999742 234577777887799999999999999999
Q ss_pred CCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 484 GYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 484 ~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
+++.++..+++... .++++++..++..+.+
T Consensus 154 ~~~~~~~~~~l~~~----------------gi~~~~~~~i~~~~~g 183 (188)
T TIGR00678 154 PLSEEALLQWLIRQ----------------GISEEAAELLLALAGG 183 (188)
T ss_pred CCCHHHHHHHHHHc----------------CCCHHHHHHHHHHcCC
Confidence 99999988887654 1567888888876554
No 177
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.27 E-value=7.9e-11 Score=141.89 Aligned_cols=213 Identities=19% Similarity=0.330 Sum_probs=142.2
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCc---hhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~---~~~l~g~~ 386 (828)
.+++|.+...+.+.+.+.... ....++|++|+||||||++|++|.... +.+++.++|..... .+.+.|+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~ 451 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHE 451 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcc
Confidence 368899999998887776432 234579999999999999999998865 46899999987643 23455543
Q ss_pred cc-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 387 RT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 387 ~~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
+. +.|.... ....+..+ .++++|||||+.+..+. +..|+.+|+......... +.. -..++.+|+|||.
T Consensus 452 ~~~~~g~~~~-~~g~le~a--~~GtL~Ldei~~L~~~~----Q~~L~~~l~~~~~~~~g~---~~~-~~~~~RiI~~t~~ 520 (686)
T PRK15429 452 RGAFTGASAQ-RIGRFELA--DKSSLFLDEVGDMPLEL----QPKLLRVLQEQEFERLGS---NKI-IQTDVRLIAATNR 520 (686)
T ss_pred cccccccccc-hhhHHHhc--CCCeEEEechhhCCHHH----HHHHHHHHHhCCEEeCCC---CCc-ccceEEEEEeCCC
Confidence 32 2222111 11233333 35799999999999887 899999997543211111 111 1246789999987
Q ss_pred C-------CCCCccccCceEE--EEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchH
Q 003349 466 A-------QPIPPPLLDRMEV--IELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 534 (828)
Q Consensus 466 ~-------~~l~~aLl~R~~~--i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R 534 (828)
. ..+.+.|..|+.. |.+|++.. +++-.+++.++. +...+++.. ...++++++..|.. |.|..++|
T Consensus 521 ~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~-~~~~~~~~~--~~~~s~~al~~L~~-y~WPGNvr 596 (686)
T PRK15429 521 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTF-KIARRMGRN--IDSIPAETLRTLSN-MEWPGNVR 596 (686)
T ss_pred CHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHH-HHHHHcCCC--CCCcCHHHHHHHHh-CCCCCcHH
Confidence 5 3677788888864 66666655 444445555543 333333322 23589999987655 78889999
Q ss_pred HHHHHHHHHH
Q 003349 535 NLERNLAALA 544 (828)
Q Consensus 535 ~l~~~i~~l~ 544 (828)
.|++.|++.+
T Consensus 597 EL~~~i~~a~ 606 (686)
T PRK15429 597 ELENVIERAV 606 (686)
T ss_pred HHHHHHHHHH
Confidence 9998888876
No 178
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=2.1e-10 Score=129.63 Aligned_cols=213 Identities=18% Similarity=0.183 Sum_probs=128.6
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh-----CCCeEEEecCCcCchhhh-----
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGGVKDEADI----- 382 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l-----~~~~~~i~~~~~~~~~~l----- 382 (828)
+.++|.++..+.+...+..... ...+.+++++||||||||++++.+++.+ +..++.+++....+...+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 3467888888888887754322 2345678999999999999999999877 345667777654432211
Q ss_pred ---ccCcccccccCcchHHHHHHhc---CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 383 ---RGHRRTYIGSMPGRLIDGLKRV---GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 383 ---~g~~~~~vg~~~g~l~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.+......|.....+...+... .....||+|||+|.+......+....|+..++.. ...+
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~--------------~~~~ 173 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY--------------PGAR 173 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc--------------CCCe
Confidence 1111111122222222222221 1223489999999987222222244444443311 1125
Q ss_pred cEEEEecCCCC---CCCccccCceE--EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 457 VIFVATANRAQ---PIPPPLLDRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 457 viiI~TtN~~~---~l~~aLl~R~~--~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
+.+|+++|..+ .+++.+.+||. .|.|++|+.++..+|++.++.. +.. .-.+++++++.+++...+..
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~------~~~--~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE------GFY--PGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh------hcc--cCCCCHhHHHHHHHHHHHhc
Confidence 67888888764 57888888883 7999999999999999887631 111 12578999998888654433
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAAVKVA 552 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~~~~l 552 (828)
| ++ +.+-.+|+.|+..+.
T Consensus 246 G--d~-r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 246 G--DA-RVAIDLLRRAGLIAE 263 (394)
T ss_pred C--cH-HHHHHHHHHHHHHHH
Confidence 3 12 233345555544433
No 179
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.26 E-value=2e-11 Score=125.75 Aligned_cols=170 Identities=23% Similarity=0.392 Sum_probs=104.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh-----CCCeEEEecCCcCchhhhccCcccccccC-cchHHHHHHhcCCCCcEEEE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGGVKDEADIRGHRRTYIGSM-PGRLIDGLKRVGVCNPVMLL 413 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l-----~~~~~~i~~~~~~~~~~l~g~~~~~vg~~-~g~l~~~~~~~~~~~~vl~i 413 (828)
...+.|+||+|+|||+|++++++.+ +..+..++...... .+.... .+.+ ..|...-....+++|
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~---------~~~~~~~~~~~-~~~~~~~~~~DlL~i 103 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR---------EFADALRDGEI-EEFKDRLRSADLLII 103 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH---------HHHHHHHTTSH-HHHHHHHCTSSEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH---------HHHHHHHcccc-hhhhhhhhcCCEEEE
Confidence 3458899999999999999999876 23344444332211 010000 0111 122222223569999
Q ss_pred ecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEec-CCCC---CCCccccCceE---EEEcCCCC
Q 003349 414 DEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA-NRAQ---PIPPPLLDRME---VIELPGYT 486 (828)
Q Consensus 414 DEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt-N~~~---~l~~aLl~R~~---~i~~~~~~ 486 (828)
|+++.+..+. ..+..|+.+++.... ... .+|+|+ ..|. .+++.|.+||. ++.+.+|+
T Consensus 104 DDi~~l~~~~--~~q~~lf~l~n~~~~-------------~~k-~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 104 DDIQFLAGKQ--RTQEELFHLFNRLIE-------------SGK-QLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp ETGGGGTTHH--HHHHHHHHHHHHHHH-------------TTS-EEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred ecchhhcCch--HHHHHHHHHHHHHHh-------------hCC-eEEEEeCCCCccccccChhhhhhHhhcchhhcCCCC
Confidence 9999987532 126778888764321 112 344555 4444 56788999994 79999999
Q ss_pred HHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 003349 487 PEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAA 547 (828)
Q Consensus 487 ~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a 547 (828)
.+.+.+|+++... ..++.++++++++|++++.+ .+|.|...|.++...+
T Consensus 168 ~~~r~~il~~~a~----------~~~~~l~~~v~~~l~~~~~~--~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 168 DEDRRRILQKKAK----------ERGIELPEEVIEYLARRFRR--DVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHHHHHHHHHHH----------HTT--S-HHHHHHHHHHTTS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------HhCCCCcHHHHHHHHHhhcC--CHHHHHHHHHHHHHHh
Confidence 9999999998753 23467999999999998765 6788888888887543
No 180
>PRK05642 DNA replication initiation factor; Validated
Probab=99.25 E-value=4e-11 Score=124.96 Aligned_cols=159 Identities=22% Similarity=0.347 Sum_probs=107.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEeccc
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 417 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid 417 (828)
..++|+||+|||||+|++++++.+ +.....++...... . ...+.+.+.. ..+++||+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~-------------~-~~~~~~~~~~----~d~LiiDDi~ 107 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD-------------R-GPELLDNLEQ----YELVCLDDLD 107 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh-------------h-hHHHHHhhhh----CCEEEEechh
Confidence 568899999999999999999865 33444444322111 0 0122333332 3599999999
Q ss_pred ccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC-CCC---CCCccccCce---EEEEcCCCCHHHH
Q 003349 418 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN-RAQ---PIPPPLLDRM---EVIELPGYTPEEK 490 (828)
Q Consensus 418 ~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN-~~~---~l~~aLl~R~---~~i~~~~~~~ee~ 490 (828)
.+..+. +.+..|+.+++.... ++..+|+|+| .+. .+.+.|++|| .++.+.+|+.+++
T Consensus 108 ~~~~~~--~~~~~Lf~l~n~~~~--------------~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 108 VIAGKA--DWEEALFHLFNRLRD--------------SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDK 171 (234)
T ss_pred hhcCCh--HHHHHHHHHHHHHHh--------------cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHH
Confidence 876543 124668888764221 1223455555 343 3479999999 5799999999999
Q ss_pred HHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 003349 491 LRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 545 (828)
Q Consensus 491 ~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~ 545 (828)
.++++.... . .++.++++++++|+.++.+ .+|.+...++.+.+
T Consensus 172 ~~il~~ka~-----~-----~~~~l~~ev~~~L~~~~~~--d~r~l~~~l~~l~~ 214 (234)
T PRK05642 172 LRALQLRAS-----R-----RGLHLTDEVGHFILTRGTR--SMSALFDLLERLDQ 214 (234)
T ss_pred HHHHHHHHH-----H-----cCCCCCHHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 999986532 1 1378999999999998765 45777777777753
No 181
>PRK08727 hypothetical protein; Validated
Probab=99.25 E-value=1e-10 Score=121.99 Aligned_cols=159 Identities=23% Similarity=0.310 Sum_probs=104.5
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCC---CeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEeccc
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGR---KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 417 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~---~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid 417 (828)
..++|+||||||||+|+++++..+.. ....+++.... ..+...+.... ...+++|||++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~-----------------~~~~~~~~~l~-~~dlLiIDDi~ 103 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA-----------------GRLRDALEALE-GRSLVALDGLE 103 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh-----------------hhHHHHHHHHh-cCCEEEEeCcc
Confidence 45899999999999999999887632 33333322110 12223332222 23599999999
Q ss_pred ccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC-CCC---CCCccccCce---EEEEcCCCCHHHH
Q 003349 418 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN-RAQ---PIPPPLLDRM---EVIELPGYTPEEK 490 (828)
Q Consensus 418 ~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN-~~~---~l~~aLl~R~---~~i~~~~~~~ee~ 490 (828)
.+..... .+..++.+++.... .+..+|+|+| .+. .+.++|.+|| .++.|++|+.+++
T Consensus 104 ~l~~~~~--~~~~lf~l~n~~~~--------------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 104 SIAGQRE--DEVALFDFHNRARA--------------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred cccCChH--HHHHHHHHHHHHHH--------------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHH
Confidence 8875431 24567776654321 1234666666 444 4579999996 3799999999999
Q ss_pred HHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 003349 491 LRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 545 (828)
Q Consensus 491 ~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~ 545 (828)
.+|++++... .++.++++++.+|+.++.+ .+|.+...++.+.+
T Consensus 168 ~~iL~~~a~~----------~~l~l~~e~~~~La~~~~r--d~r~~l~~L~~l~~ 210 (233)
T PRK08727 168 AAVLRERAQR----------RGLALDEAAIDWLLTHGER--ELAGLVALLDRLDR 210 (233)
T ss_pred HHHHHHHHHH----------cCCCCCHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence 9999986431 2478999999999998764 33455555665543
No 182
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=99.25 E-value=9.4e-12 Score=127.91 Aligned_cols=109 Identities=22% Similarity=0.394 Sum_probs=93.7
Q ss_pred CCCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCC--CCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEe
Q 003349 703 LLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVR--ADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVI 780 (828)
Q Consensus 703 ~~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~--~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~vi 780 (828)
++...+|.+|. -.++||||||+++++|++-++...+. ..+|-||.|..+|+|.|||||..|+.+|.++|.+-|+
T Consensus 219 v~~~~~V~~~~----~~IGGPSAGLMFSL~Iy~qlt~~DL~~g~~IAGTGTI~~DG~VG~IGGI~qKvvAA~~AGA~vFf 294 (342)
T COG3480 219 VWAPPDVDFNT----ENIGGPSAGLMFSLAIYDQLTKGDLTGGRFIAGTGTIEVDGKVGPIGGIDQKVVAAAKAGADVFF 294 (342)
T ss_pred cccCCceEeec----ccCCCCchhheeeHHHHhhcccccccCceEEecceeeccCCcccCcccHhHHhHHHHhcCCcEEE
Confidence 35566777777 45889999999999999999988775 5678899999999999999999999999999999999
Q ss_pred ecccChhhhc---------cChhhhhCCcEEEEcCCHHHHHHHH
Q 003349 781 LPERNLKDLV---------EVPAAVLASLEIILAKRMEDVLEQA 815 (828)
Q Consensus 781 iP~~n~~~~~---------~~~~~~~~~i~i~~v~~l~e~~~~~ 815 (828)
+|.+|+.+-. ..-+++...|+|++|.|+.||++++
T Consensus 295 ~P~~~~~e~~s~sny~~a~~~ak~l~t~mkivpv~T~q~aldyl 338 (342)
T COG3480 295 VPADNCAEEMSDSNYDEALVAAEDLSTAMKIVPVKTLQEALDYL 338 (342)
T ss_pred ecCCccchhhccCCHHHHHHHHHhhcccceEEeechhhhhhhHh
Confidence 9997766551 1235667799999999999999986
No 183
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.24 E-value=2.2e-10 Score=119.86 Aligned_cols=89 Identities=26% Similarity=0.379 Sum_probs=72.7
Q ss_pred CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC------------CCCCcccc
Q 003349 407 CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------------QPIPPPLL 474 (828)
Q Consensus 407 ~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~------------~~l~~aLl 474 (828)
-++|+||||++.+.-+. ++.|.+.|+.. +. -++|++||+. ..+|..|+
T Consensus 291 VpGVLFIDEvHmLDIE~----FsFlnrAlEse---------------~a-PIii~AtNRG~~kiRGTd~~sPhGIP~DlL 350 (450)
T COG1224 291 VPGVLFIDEVHMLDIEC----FSFLNRALESE---------------LA-PIIILATNRGMTKIRGTDIESPHGIPLDLL 350 (450)
T ss_pred ecceEEEechhhhhHHH----HHHHHHHhhcc---------------cC-cEEEEEcCCceeeecccCCcCCCCCCHhhh
Confidence 34599999999998766 77788888742 22 3677788875 48999999
Q ss_pred CceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHH
Q 003349 475 DRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ 525 (828)
Q Consensus 475 ~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~ 525 (828)
||+-+|...+|+.++...|++... +..++.+++++++++++
T Consensus 351 DRllII~t~py~~~EireIi~iRa----------~ee~i~l~~~Ale~L~~ 391 (450)
T COG1224 351 DRLLIISTRPYSREEIREIIRIRA----------KEEDIELSDDALEYLTD 391 (450)
T ss_pred hheeEEecCCCCHHHHHHHHHHhh----------hhhccccCHHHHHHHHh
Confidence 999999999999999999999874 24468899999999987
No 184
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=1e-10 Score=128.45 Aligned_cols=180 Identities=17% Similarity=0.208 Sum_probs=116.7
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCC-------eEEE-ecCCcCchhhh-c
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK-------FIRI-SLGGVKDEADI-R 383 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~-------~~~i-~~~~~~~~~~l-~ 383 (828)
.+++|++++++.+...+.... -+..+||+||+|+|||++|+.+|+.+... .... .|..-.....+ .
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQ 97 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHc
Confidence 358899999999988775332 23459999999999999999999988541 1100 11010000000 0
Q ss_pred c-Ccccc-cc----c------C---cch---HHHHHHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCccccccc
Q 003349 384 G-HRRTY-IG----S------M---PGR---LIDGLKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTF 443 (828)
Q Consensus 384 g-~~~~~-vg----~------~---~g~---l~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~ 443 (828)
+ ++.-+ +. . . -.. +.+.+...+. ...|++|||+|.+.... +++|+..|++.
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~a----anaLLk~LEEp----- 168 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNA----ANAILKTLEEP----- 168 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHH----HHHHHHHHhcC-----
Confidence 0 10000 00 0 0 012 2223332221 23499999999998776 89999999853
Q ss_pred ccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHH
Q 003349 444 NDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLV 523 (828)
Q Consensus 444 ~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l 523 (828)
..+++||+.|+.++.+.|.+++||..+.|++|+.++..+++.... .. ..++++++..+
T Consensus 169 ----------p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~---------~~---~~~~~~~~~~i 226 (351)
T PRK09112 169 ----------PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG---------SS---QGSDGEITEAL 226 (351)
T ss_pred ----------CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh---------cc---cCCCHHHHHHH
Confidence 235677777888899999999999999999999999999887631 11 12667777777
Q ss_pred HHHhh
Q 003349 524 IQRYT 528 (828)
Q Consensus 524 ~~~~~ 528 (828)
+....
T Consensus 227 ~~~s~ 231 (351)
T PRK09112 227 LQRSK 231 (351)
T ss_pred HHHcC
Confidence 66443
No 185
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=1.3e-11 Score=140.06 Aligned_cols=172 Identities=19% Similarity=0.246 Sum_probs=110.2
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhC-----CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~-----~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
..++||||||+|||+|++++++.+. ..+..+++..... .+... +-......+.+.++ ....+++|||
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~--~~~~~---~~~~~~~~f~~~~~---~~~dvLlIDD 202 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN--DLVDS---MKEGKLNEFREKYR---KKVDVLLIDD 202 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH--HHHHH---HhcccHHHHHHHHH---hcCCEEEEec
Confidence 3589999999999999999999862 2344444332111 11100 00000111222221 1245999999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEec-CCCC---CCCccccCceE---EEEcCCCCHH
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA-NRAQ---PIPPPLLDRME---VIELPGYTPE 488 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt-N~~~---~l~~aLl~R~~---~i~~~~~~~e 488 (828)
++.+.... ..+..|+.+++.... ... .+|+|+ +.+. .+.+.+.+||. ++.+.+|+.+
T Consensus 203 i~~l~~~~--~~q~elf~~~n~l~~-------------~~k-~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 203 VQFLIGKT--GVQTELFHTFNELHD-------------SGK-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred hhhhcCcH--HHHHHHHHHHHHHHH-------------cCC-eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 99876432 124567666653221 112 344555 4443 56788999996 7999999999
Q ss_pred HHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 003349 489 EKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAA 548 (828)
Q Consensus 489 e~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~ 548 (828)
.+..|+++.+. ..++.++++++++|++++.+ .+|.|+..+.++...+.
T Consensus 267 ~r~~IL~~~~~----------~~~~~l~~ev~~~Ia~~~~~--~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 267 TRKKIARKMLE----------IEHGELPEEVLNFVAENVDD--NLRRLRGAIIKLLVYKE 314 (440)
T ss_pred HHHHHHHHHHH----------hcCCCCCHHHHHHHHhcccc--CHHHHHHHHHHHHHHHH
Confidence 99999988742 12477999999999997764 67899988888875443
No 186
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.23 E-value=1.4e-10 Score=137.55 Aligned_cols=202 Identities=20% Similarity=0.325 Sum_probs=122.0
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---------------------------
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG--------------------------- 365 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~--------------------------- 365 (828)
..|+||+.++..+.-....+ ...++||.||||||||++|++|++.+.
T Consensus 4 ~~ivGq~~~~~al~~~av~~------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~ 77 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDP------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRK 77 (633)
T ss_pred chhcChHHHHHHHHHHhhCC------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhc
Confidence 46899999987765443321 224699999999999999999999983
Q ss_pred --------CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHh----------cCCCCcEEEEecccccCCCCCCCh
Q 003349 366 --------RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKR----------VGVCNPVMLLDEIDKTGSDVRGDP 427 (828)
Q Consensus 366 --------~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~----------~~~~~~vl~iDEid~l~~~~~~~~ 427 (828)
.+|+.+.++. ....+. |.. .+...+.. ....++++|||||+.+.+..
T Consensus 78 ~~~~~~~~~pfv~~p~~~--t~~~l~-------G~~--d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~---- 142 (633)
T TIGR02442 78 YRPSEQRPVPFVNLPLGA--TEDRVV-------GSL--DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHL---- 142 (633)
T ss_pred ccccccCCCCeeeCCCCC--cHHHcC-------Ccc--cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHH----
Confidence 2233222221 111111 211 01111110 01235699999999999887
Q ss_pred HHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-CCCccccCceE-EEEcCCCC-HHHHHHHHHHhhc-----
Q 003349 428 ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-PIPPPLLDRME-VIELPGYT-PEEKLRIAMRHLI----- 499 (828)
Q Consensus 428 ~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-~l~~aLl~R~~-~i~~~~~~-~ee~~~Il~~~l~----- 499 (828)
++.|++.|+........+. ..... ..++.+|+|+|+.+ .++++|++||. .|.++.+. .+++.++++..+.
T Consensus 143 q~~Ll~~le~g~~~v~r~g-~~~~~-~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~ 220 (633)
T TIGR02442 143 VDVLLDAAAMGVNRVEREG-LSVSH-PARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADP 220 (633)
T ss_pred HHHHHHHHhcCCEEEEECC-ceeee-cCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCc
Confidence 9999999986532211111 11222 35689999999754 78999999997 47777665 4667777765321
Q ss_pred ---------------HHHHHhcCCCCcccccCHHHHHHHHHHhhh--hhchHHHHH
Q 003349 500 ---------------PRVLDQHGLGSEFLQIPEAMVKLVIQRYTR--EAGVRNLER 538 (828)
Q Consensus 500 ---------------~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~--~~g~R~l~~ 538 (828)
+...... .....+.++++++.+++..+.. -.|.|....
T Consensus 221 ~~~~~~~~~~~~~l~~~i~~ar-~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~ 275 (633)
T TIGR02442 221 EAFAARWAAEQEELRNRIARAR-SLLPSVRISDSLIRFISELCIEFGVDGHRADIV 275 (633)
T ss_pred HHHHHHhhhhHHHHHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHH
Confidence 0000000 1123578899999999885543 224454433
No 187
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=5.5e-11 Score=128.76 Aligned_cols=161 Identities=18% Similarity=0.252 Sum_probs=109.1
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCe-------EEEecCCcCchhhh--
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF-------IRISLGGVKDEADI-- 382 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~-------~~i~~~~~~~~~~l-- 382 (828)
.++++||+.+++.+...+.... -++.+||+||+|+||+++|.++|+.+.... .++.-....|...+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p 77 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEP 77 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEec
Confidence 3578999999999998886442 356899999999999999999999873221 00000000000000
Q ss_pred ----ccCc--c---cccc-------cC----cchHHHHHHhcCCC--CcEEEEecccccCCCCCCChHHHHHHhcCcccc
Q 003349 383 ----RGHR--R---TYIG-------SM----PGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQN 440 (828)
Q Consensus 383 ----~g~~--~---~~vg-------~~----~g~l~~~~~~~~~~--~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~ 440 (828)
.|.. . ...| .. -..+.+.+...+.. ..|++||++|++.... +|+||..|++.
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~a----aNaLLK~LEEP-- 151 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAA----ANALLKTLEEP-- 151 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHH----HHHHHHHHhCC--
Confidence 0000 0 0000 00 01233333333322 3399999999998766 89999999853
Q ss_pred cccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHh
Q 003349 441 KTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRH 497 (828)
Q Consensus 441 ~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~ 497 (828)
++++||++|+.++.+.|.++||+..+.|++++.++..+++...
T Consensus 152 --------------p~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 152 --------------GNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred --------------CCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHh
Confidence 2457888888999999999999999999999999999888875
No 188
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=9.5e-11 Score=127.94 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=105.9
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccccccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGS 392 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~ 392 (828)
++++||+.+++.+...+... .-++.+||+||+|+|||++|+++|+.+...... ....+...+.......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~---~~h~D~~~~~~~~~~~i-- 73 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ---REYVDIIEFKPINKKSI-- 73 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC---CCCCCeEEeccccCCCC--
Confidence 46889999999988877532 334578999999999999999999987322100 00000000000000001
Q ss_pred CcchHHHHHH---hcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC
Q 003349 393 MPGRLIDGLK---RVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ 467 (828)
Q Consensus 393 ~~g~l~~~~~---~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~ 467 (828)
.-..+++... ..+. ...|++||++|++.... +|+|+..|++. ..+++||++|+.++
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a----~naLLK~LEep---------------p~~t~~il~~~~~~ 134 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQA----QNAFLKTIEEP---------------PKGVFIILLCENLE 134 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHH----HHHHHHHhcCC---------------CCCeEEEEEeCChH
Confidence 1123444333 2222 22399999999998766 89999999853 34567888878889
Q ss_pred CCCccccCceEEEEcCCCCHHHHHHHHHHh
Q 003349 468 PIPPPLLDRMEVIELPGYTPEEKLRIAMRH 497 (828)
Q Consensus 468 ~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~ 497 (828)
.+.+.+++|+.++.|++++.++....+...
T Consensus 135 ~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 135 QILDTIKSRCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred hCcHHHHhhceeeeCCCcCHHHHHHHHHHH
Confidence 999999999999999999999988777654
No 189
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.21 E-value=1.2e-10 Score=139.56 Aligned_cols=211 Identities=17% Similarity=0.213 Sum_probs=141.4
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCc---hhhhccC
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGH 385 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~---~~~l~g~ 385 (828)
..+++|.+...+++.+.+..... ....+||+|+|||||+++|++|..... .+|+.++|..... .+.+.|.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~ 399 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGS 399 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCC
Confidence 35678888888888777654432 344589999999999999999998763 6899999998754 2345543
Q ss_pred cccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 386 RRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
.. |...+.....|..+ .++.||||||+.+.... |..|+++|+......... ....++ ++.+|+|||.
T Consensus 400 ~~---~~~~~~~~g~~~~a--~~GtL~ldei~~l~~~~----Q~~Ll~~l~~~~~~~~~~-~~~~~~---~~riI~~t~~ 466 (638)
T PRK11388 400 DR---TDSENGRLSKFELA--HGGTLFLEKVEYLSPEL----QSALLQVLKTGVITRLDS-RRLIPV---DVRVIATTTA 466 (638)
T ss_pred CC---cCccCCCCCceeEC--CCCEEEEcChhhCCHHH----HHHHHHHHhcCcEEeCCC-CceEEe---eEEEEEeccC
Confidence 21 11111111123333 35699999999999887 899999997543221111 011122 4679999887
Q ss_pred C-------CCCCccccCceEE--EEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchH
Q 003349 466 A-------QPIPPPLLDRMEV--IELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 534 (828)
Q Consensus 466 ~-------~~l~~aLl~R~~~--i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R 534 (828)
. ..+.+.|..|+.. |.+|++.. +++..++..++.. ....++. .+.++++++..|.. |.+..++|
T Consensus 467 ~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~-~~~~~~~---~~~~s~~a~~~L~~-y~WPGNvr 541 (638)
T PRK11388 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRS-LEKRFST---RLKIDDDALARLVS-YRWPGNDF 541 (638)
T ss_pred CHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHH-HHHHhCC---CCCcCHHHHHHHHc-CCCCChHH
Confidence 5 3788888899964 66777665 3455566665543 2233332 25799999988766 88888999
Q ss_pred HHHHHHHHHH
Q 003349 535 NLERNLAALA 544 (828)
Q Consensus 535 ~l~~~i~~l~ 544 (828)
.|++.|+.++
T Consensus 542 eL~~~l~~~~ 551 (638)
T PRK11388 542 ELRSVIENLA 551 (638)
T ss_pred HHHHHHHHHH
Confidence 9998888766
No 190
>PRK06620 hypothetical protein; Validated
Probab=99.21 E-value=6.7e-11 Score=121.28 Aligned_cols=145 Identities=17% Similarity=0.274 Sum_probs=96.6
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTG 420 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~ 420 (828)
..++|+||||||||+|++++++..+..+ +. .. .. . .+.+. ...+++||||+...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~--~~-----------~~---~----~~~~~----~~d~lliDdi~~~~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI--IK--DI-----------FF---N----EEILE----KYNAFIIEDIENWQ 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE--cc--hh-----------hh---c----hhHHh----cCCEEEEeccccch
Confidence 5689999999999999999998765321 11 00 00 0 01111 23599999999542
Q ss_pred CCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC--CCCccccCceE---EEEcCCCCHHHHHHHHH
Q 003349 421 SDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ--PIPPPLLDRME---VIELPGYTPEEKLRIAM 495 (828)
Q Consensus 421 ~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~--~l~~aLl~R~~---~i~~~~~~~ee~~~Il~ 495 (828)
...|+.+++.... ....++++++..+. .+ ++|++|+. ++.+.+|+.+++..+++
T Consensus 99 -------~~~lf~l~N~~~e-------------~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 99 -------EPALLHIFNIINE-------------KQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred -------HHHHHHHHHHHHh-------------cCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 2355555542211 11234555444443 46 89999997 89999999999999998
Q ss_pred HhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 496 RHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
+.... .++.++++++++|+.++.+ .+|.+...++.+.
T Consensus 158 k~~~~----------~~l~l~~ev~~~L~~~~~~--d~r~l~~~l~~l~ 194 (214)
T PRK06620 158 KHFSI----------SSVTISRQIIDFLLVNLPR--EYSKIIEILENIN 194 (214)
T ss_pred HHHHH----------cCCCCCHHHHHHHHHHccC--CHHHHHHHHHHHH
Confidence 87531 2478999999999998765 4577777777654
No 191
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.21 E-value=1.5e-10 Score=123.58 Aligned_cols=88 Identities=31% Similarity=0.410 Sum_probs=62.1
Q ss_pred CcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC------------CCCCccccC
Q 003349 408 NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------------QPIPPPLLD 475 (828)
Q Consensus 408 ~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~------------~~l~~aLl~ 475 (828)
++|+||||++.+..+. ++.|...|+.. ++ -++|++||+. ..+|..|++
T Consensus 279 pGVLFIDEvHmLDiEc----FsfLnralEs~---------------~s-PiiIlATNRg~~~irGt~~~sphGiP~DlLD 338 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIEC----FSFLNRALESE---------------LS-PIIILATNRGITKIRGTDIISPHGIPLDLLD 338 (398)
T ss_dssp E-EEEEESGGGSBHHH----HHHHHHHHTST---------------T---EEEEEES-SEEE-BTTS-EEETT--HHHHT
T ss_pred cceEEecchhhccHHH----HHHHHHHhcCC---------------CC-cEEEEecCceeeeccCccCcCCCCCCcchHh
Confidence 4599999999998776 78888888742 22 3567777865 489999999
Q ss_pred ceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHH
Q 003349 476 RMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ 525 (828)
Q Consensus 476 R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~ 525 (828)
|+-+|...+|+.++..+|++.++. .+++.+++++++.|..
T Consensus 339 RllII~t~py~~~ei~~Il~iR~~----------~E~v~i~~~al~~L~~ 378 (398)
T PF06068_consen 339 RLLIIRTKPYSEEEIKQILKIRAK----------EEDVEISEDALDLLTK 378 (398)
T ss_dssp TEEEEEE----HHHHHHHHHHHHH----------HCT--B-HHHHHHHHH
T ss_pred hcEEEECCCCCHHHHHHHHHhhhh----------hhcCcCCHHHHHHHHH
Confidence 999999999999999999998752 3468999999999886
No 192
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.20 E-value=2.1e-10 Score=123.96 Aligned_cols=177 Identities=19% Similarity=0.282 Sum_probs=114.2
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC-------CeEEEec----CCcCch-h-
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR-------KFIRISL----GGVKDE-A- 380 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~-------~~~~i~~----~~~~~~-~- 380 (828)
+++|++++++++.+++.........+...++|+||||+||||+|++|++.++. +++.+.+ +...+. -
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~ 131 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLH 131 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcc
Confidence 79999999999999998766543455678999999999999999999999976 7777766 221110 0
Q ss_pred -------------------hhccCc---------cccccc----------------------Ccc-----hHHHHHH---
Q 003349 381 -------------------DIRGHR---------RTYIGS----------------------MPG-----RLIDGLK--- 402 (828)
Q Consensus 381 -------------------~l~g~~---------~~~vg~----------------------~~g-----~l~~~~~--- 402 (828)
.+.|.. ..|.|. .++ .+....-
T Consensus 132 l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G~vd 211 (361)
T smart00763 132 LFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTGKVD 211 (361)
T ss_pred cCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhcccC
Confidence 000000 000010 000 0110000
Q ss_pred -----h---------------cCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEe
Q 003349 403 -----R---------------VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVAT 462 (828)
Q Consensus 403 -----~---------------~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~T 462 (828)
. ....++|+-|+|+.++..+. +..||.+++++... .+.+. ..+. -+.+||+|
T Consensus 212 ~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~----l~~LL~~~qE~~v~--~~~~~-~~~~-~d~liia~ 283 (361)
T smart00763 212 IRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKF----LHPLLTATQEGNIK--GTGGF-AMIP-IDGLIIAH 283 (361)
T ss_pred HHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHH----HHHHhhhhhcceEe--cCCcc-cccc-cceEEEEe
Confidence 0 01123589999999998887 89999999865321 12221 1111 23489999
Q ss_pred cCCC-------CCCCccccCceEEEEcCCCCH-HHHHHHHHHhh
Q 003349 463 ANRA-------QPIPPPLLDRMEVIELPGYTP-EEKLRIAMRHL 498 (828)
Q Consensus 463 tN~~-------~~l~~aLl~R~~~i~~~~~~~-ee~~~Il~~~l 498 (828)
||.. ....+||+|||.++.++.+.. .+-.+|.++.+
T Consensus 284 sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E~~Iy~k~~ 327 (361)
T smart00763 284 SNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEEAQIYEKLL 327 (361)
T ss_pred CCHHHHhhhhccccchhhhhceEEEeCCCcCCHHHHHHHHHHHh
Confidence 9988 366899999999999987655 56667777665
No 193
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=3.3e-10 Score=125.05 Aligned_cols=161 Identities=17% Similarity=0.251 Sum_probs=107.2
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE-----------EEecCCcC-chh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-----------RISLGGVK-DEA 380 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~-----------~i~~~~~~-~~~ 380 (828)
.+++||+++++.+...+.... -++.+||+||+|+||+++|.++|+.+-..-. .+...+.. ...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 458999999999988776432 3446999999999999999999998832110 00001100 000
Q ss_pred hh--ccCcccc-c-----cc--------CcchHHHHH---HhcC--CCCcEEEEecccccCCCCCCChHHHHHHhcCccc
Q 003349 381 DI--RGHRRTY-I-----GS--------MPGRLIDGL---KRVG--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQ 439 (828)
Q Consensus 381 ~l--~g~~~~~-v-----g~--------~~g~l~~~~---~~~~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~ 439 (828)
.+ ..|+.-+ + +. .-..+++.. ...+ ....|++|||+|.+.... +++|+..+++.
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~a----anaLLK~LEep- 168 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANA----ANALLKVLEEP- 168 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHH----HHHHHHHHhcC-
Confidence 00 0000000 0 00 011233222 2222 123399999999998766 89999999853
Q ss_pred ccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHh
Q 003349 440 NKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRH 497 (828)
Q Consensus 440 ~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~ 497 (828)
..+++||++|+.++.+.+.+++||..+.|++++.++..+++...
T Consensus 169 --------------p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 169 --------------PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred --------------CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh
Confidence 23568888999999999999999999999999999999888765
No 194
>PRK09087 hypothetical protein; Validated
Probab=99.19 E-value=1.2e-10 Score=120.36 Aligned_cols=151 Identities=20% Similarity=0.302 Sum_probs=101.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEeccccc
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKT 419 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l 419 (828)
.+.++|+||+|+|||+|++++++..+..+ ++..... ..+...+. ..+++||+++.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~-----------------~~~~~~~~-----~~~l~iDDi~~~ 99 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIG-----------------SDAANAAA-----EGPVLIEDIDAG 99 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcc-----------------hHHHHhhh-----cCeEEEECCCCC
Confidence 45689999999999999999998754332 2211100 01111111 248999999987
Q ss_pred CCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC-CC---CCCccccCce---EEEEcCCCCHHHHHH
Q 003349 420 GSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR-AQ---PIPPPLLDRM---EVIELPGYTPEEKLR 492 (828)
Q Consensus 420 ~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~-~~---~l~~aLl~R~---~~i~~~~~~~ee~~~ 492 (828)
..+ +..|+.+++.... .+..+|+|++. +. ...+.|++|| .++++.+|+.+++.+
T Consensus 100 ~~~-----~~~lf~l~n~~~~--------------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 100 GFD-----ETGLFHLINSVRQ--------------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred CCC-----HHHHHHHHHHHHh--------------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 432 5678887764321 12245555553 32 3478999999 589999999999999
Q ss_pred HHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 003349 493 IAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 545 (828)
Q Consensus 493 Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~ 545 (828)
|+++.+.. .++.++++++++|++++.+ .+|.+...+.++-+
T Consensus 161 iL~~~~~~----------~~~~l~~ev~~~La~~~~r--~~~~l~~~l~~L~~ 201 (226)
T PRK09087 161 VIFKLFAD----------RQLYVDPHVVYYLVSRMER--SLFAAQTIVDRLDR 201 (226)
T ss_pred HHHHHHHH----------cCCCCCHHHHHHHHHHhhh--hHHHHHHHHHHHHH
Confidence 99988632 2478999999999998874 34555555555543
No 195
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.17 E-value=3.7e-11 Score=118.18 Aligned_cols=149 Identities=20% Similarity=0.277 Sum_probs=96.6
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCch---hhhccCccc
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDE---ADIRGHRRT 388 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~~---~~l~g~~~~ 388 (828)
++|.+...+++.+.+..... ...++|++|++||||+.+|++|-+... .+|+.++|+.+... ..+.|....
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~ 76 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKG 76 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSS
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccc
Confidence 36777777888777765443 235789999999999999999998763 58999999987543 456665443
Q ss_pred c-cccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-
Q 003349 389 Y-IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA- 466 (828)
Q Consensus 389 ~-vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~- 466 (828)
. .|.... -...+..+. ++.+|||||+.+++.. |..|+++|+..+... .....++ ..++.+|+|||..
T Consensus 77 ~~~~~~~~-~~G~l~~A~--~GtL~Ld~I~~L~~~~----Q~~Ll~~l~~~~~~~---~g~~~~~-~~~~RiI~st~~~l 145 (168)
T PF00158_consen 77 AFTGARSD-KKGLLEQAN--GGTLFLDEIEDLPPEL----QAKLLRVLEEGKFTR---LGSDKPV-PVDVRIIASTSKDL 145 (168)
T ss_dssp SSTTTSSE-BEHHHHHTT--TSEEEEETGGGS-HHH----HHHHHHHHHHSEEEC---CTSSSEE-E--EEEEEEESS-H
T ss_pred cccccccc-cCCceeecc--ceEEeecchhhhHHHH----HHHHHHHHhhchhcc---ccccccc-cccceEEeecCcCH
Confidence 2 222221 124555554 6799999999999987 999999998654322 2112222 3478899999975
Q ss_pred ------CCCCccccCceE
Q 003349 467 ------QPIPPPLLDRME 478 (828)
Q Consensus 467 ------~~l~~aLl~R~~ 478 (828)
..+.+.|..|+.
T Consensus 146 ~~~v~~g~fr~dLy~rL~ 163 (168)
T PF00158_consen 146 EELVEQGRFREDLYYRLN 163 (168)
T ss_dssp HHHHHTTSS-HHHHHHHT
T ss_pred HHHHHcCCChHHHHHHhc
Confidence 367777777764
No 196
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.16 E-value=8.3e-10 Score=131.02 Aligned_cols=172 Identities=18% Similarity=0.207 Sum_probs=105.0
Q ss_pred HHHHHhhcccccchHHHHHHHHHHHHHhhhC-------C--------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCe-
Q 003349 305 KAAKERLDSDHYGLVRVKQRIIEYLAVRKLK-------P--------DARGPVLCFVGPPGVGKTSLASSIASALGRKF- 368 (828)
Q Consensus 305 ~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~-------~--------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~- 368 (828)
..+...+...|+|++.+|+.+.-.+...... + -....++||+|+||||||.+|+.+++...+..
T Consensus 442 ~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~y 521 (915)
T PTZ00111 442 RILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIY 521 (915)
T ss_pred HHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcccc
Confidence 3345556678999999999997666432211 0 01223899999999999999999998764322
Q ss_pred ------EEEecCCcCchhhhccCcccccccCcchH---HHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCccc
Q 003349 369 ------IRISLGGVKDEADIRGHRRTYIGSMPGRL---IDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQ 439 (828)
Q Consensus 369 ------~~i~~~~~~~~~~l~g~~~~~vg~~~g~l---~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~ 439 (828)
..+.+++.. .+.+...|.. ..++..+ .+++++|||++++.+.. +.+|+++|+..+
T Consensus 522 tsG~~~s~vgLTa~~----------~~~d~~tG~~~le~GaLvlA--dgGtL~IDEidkms~~~----Q~aLlEaMEqqt 585 (915)
T PTZ00111 522 TSGKSSSSVGLTASI----------KFNESDNGRAMIQPGAVVLA--NGGVCCIDELDKCHNES----RLSLYEVMEQQT 585 (915)
T ss_pred CCCCCCccccccchh----------hhcccccCcccccCCcEEEc--CCCeEEecchhhCCHHH----HHHHHHHHhCCE
Confidence 222222210 0000000100 0011122 35699999999998876 899999998643
Q ss_pred ccccccccCCeeecCCCcEEEEecCCCC-------------CCCccccCceEE--EEcCCCCHHHHHHHH
Q 003349 440 NKTFNDHYLNVPFDLSKVIFVATANRAQ-------------PIPPPLLDRMEV--IELPGYTPEEKLRIA 494 (828)
Q Consensus 440 ~~~~~~~~~~~~~~~~~viiI~TtN~~~-------------~l~~aLl~R~~~--i~~~~~~~ee~~~Il 494 (828)
. .+.......+. ..++.||+|+|+.. .|+++|++|||. +.++.++.+.=..|.
T Consensus 586 I-sI~KaGi~~tL-~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 586 V-TIAKAGIVATL-KAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred E-EEecCCcceec-CCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHH
Confidence 1 11111111222 35789999999963 789999999983 566667665444443
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.16 E-value=3.7e-11 Score=117.81 Aligned_cols=144 Identities=23% Similarity=0.286 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE-ecCCc-----------Cchhhhcc
Q 003349 317 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI-SLGGV-----------KDEADIRG 384 (828)
Q Consensus 317 G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i-~~~~~-----------~~~~~l~g 384 (828)
||+.+++.+...+... .-++.+||+||+|+||+++|+++|+.+-.....- .|..- .+...+..
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 7888888888877643 3345689999999999999999999873221110 11110 00000000
Q ss_pred Ccc-cccccCcchHHHHHHh---cCCC--CcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcE
Q 003349 385 HRR-TYIGSMPGRLIDGLKR---VGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458 (828)
Q Consensus 385 ~~~-~~vg~~~g~l~~~~~~---~~~~--~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vi 458 (828)
... ..+ .-..+++.... .+.. ..|++||++|++.... +++||..|++. ..+++
T Consensus 76 ~~~~~~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a----~NaLLK~LEep---------------p~~~~ 134 (162)
T PF13177_consen 76 DKKKKSI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEA----QNALLKTLEEP---------------PENTY 134 (162)
T ss_dssp TTSSSSB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHH----HHHHHHHHHST---------------TTTEE
T ss_pred ccccchh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHH----HHHHHHHhcCC---------------CCCEE
Confidence 000 001 11233333332 2222 2399999999999877 99999999863 45789
Q ss_pred EEEecCCCCCCCccccCceEEEEcCCCC
Q 003349 459 FVATANRAQPIPPPLLDRMEVIELPGYT 486 (828)
Q Consensus 459 iI~TtN~~~~l~~aLl~R~~~i~~~~~~ 486 (828)
||++|+.++.+.|.++||+..+.|++++
T Consensus 135 fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEEECChHHChHHHHhhceEEecCCCC
Confidence 9999999999999999999999998764
No 198
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.16 E-value=1.3e-10 Score=127.65 Aligned_cols=143 Identities=24% Similarity=0.327 Sum_probs=99.2
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCe-EEEEcCCCCchhHHHHHHHHHhC------------------------CCe
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPV-LCFVGPPGVGKTSLASSIASALG------------------------RKF 368 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~-lLL~GppGtGKT~la~~la~~l~------------------------~~~ 368 (828)
+++|++.+...+..+..... ..++ +||+||||+|||++|.++|+.+. ..+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence 46677777777766665322 3445 99999999999999999999986 233
Q ss_pred EEEecCCcCchhhhccCcccccccCcchHHHHHHhc---C--CCCcEEEEecccccCCCCCCChHHHHHHhcCccccccc
Q 003349 369 IRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV---G--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTF 443 (828)
Q Consensus 369 ~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~---~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~ 443 (828)
+.++.++..... -....+.+..... + ....|++|||+|.+..+. +++|+..++..
T Consensus 77 lel~~s~~~~~~-----------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A----~nallk~lEep----- 136 (325)
T COG0470 77 LELNPSDLRKID-----------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDA----ANALLKTLEEP----- 136 (325)
T ss_pred EEecccccCCCc-----------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHH----HHHHHHHhccC-----
Confidence 444433322100 0111222222222 2 122399999999999876 89999999853
Q ss_pred ccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHH
Q 003349 444 NDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKL 491 (828)
Q Consensus 444 ~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~ 491 (828)
..++.||++||.++.+-+.+++||..+.|++++.....
T Consensus 137 ----------~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~i 174 (325)
T COG0470 137 ----------PKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEAI 174 (325)
T ss_pred ----------CCCeEEEEEcCChhhccchhhhcceeeecCCchHHHHH
Confidence 35678999999999999999999999999985554433
No 199
>PRK04132 replication factor C small subunit; Provisional
Probab=99.15 E-value=2.2e-10 Score=136.68 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=112.0
Q ss_pred CCCeEEEEc--CCCCchhHHHHHHHHHh-----CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCC---CC
Q 003349 339 RGPVLCFVG--PPGVGKTSLASSIASAL-----GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGV---CN 408 (828)
Q Consensus 339 ~~~~lLL~G--ppGtGKT~la~~la~~l-----~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~---~~ 408 (828)
++-+-+..| |++.||||+|+++|+.+ +.++..++.+.......++ ..+.......+. ..
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-----------~iIk~~a~~~~~~~~~~ 631 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-----------EKVKEFARTKPIGGASF 631 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-----------HHHHHHHhcCCcCCCCC
Confidence 444555778 99999999999999987 4467788877643322221 111111111221 12
Q ss_pred cEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHH
Q 003349 409 PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPE 488 (828)
Q Consensus 409 ~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~e 488 (828)
.|+||||+|.+.... +++|+..|+.. ..++.||++||.++.+.++++|||..+.|++++.+
T Consensus 632 KVvIIDEaD~Lt~~A----QnALLk~lEep---------------~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~ 692 (846)
T PRK04132 632 KIIFLDEADALTQDA----QQALRRTMEMF---------------SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDE 692 (846)
T ss_pred EEEEEECcccCCHHH----HHHHHHHhhCC---------------CCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHH
Confidence 499999999998766 99999999852 24678999999999999999999999999999999
Q ss_pred HHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 489 EKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 489 e~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
+....++..+. ++++.++++++..++..+.+
T Consensus 693 ~i~~~L~~I~~----------~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 693 DIAKRLRYIAE----------NEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHHHHHHH----------hcCCCCCHHHHHHHHHHcCC
Confidence 99888876532 23467899999999986655
No 200
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.4e-10 Score=129.84 Aligned_cols=179 Identities=26% Similarity=0.393 Sum_probs=127.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCc-EEEEeccc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNP-VMLLDEID 417 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~-vl~iDEid 417 (828)
..+.+||+|+||||||++++++|..+|.+++.++|....+.+ -+.++-.+...|.++....| |||+-.+|
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s---------~~~~etkl~~~f~~a~~~~pavifl~~~d 500 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAES---------ASHTETKLQAIFSRARRCSPAVLFLRNLD 500 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcc---------cchhHHHHHHHHHHHhhcCceEEEEeccc
Confidence 446899999999999999999999999999999988765532 23344567778888776555 99999999
Q ss_pred ccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHH
Q 003349 418 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMR 496 (828)
Q Consensus 418 ~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~ 496 (828)
-+..+..+..--.+++.|...-. ....+++...++||+|++..+.+++.+++-|- .|.++.++.++|.+|++.
T Consensus 501 vl~id~dgged~rl~~~i~~~ls------~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~ 574 (953)
T KOG0736|consen 501 VLGIDQDGGEDARLLKVIRHLLS------NEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQW 574 (953)
T ss_pred eeeecCCCchhHHHHHHHHHHHh------cccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHH
Confidence 98866644332223333221000 01233456788999999999999999999885 799999999999999999
Q ss_pred hhcHHHHHhcCCCCcccccCHHH-HHHHHHHhhhhhchHHHHHHHHHHHH
Q 003349 497 HLIPRVLDQHGLGSEFLQIPEAM-VKLVIQRYTREAGVRNLERNLAALAR 545 (828)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~i~~~~-l~~l~~~~~~~~g~R~l~~~i~~l~~ 545 (828)
++. +..+++++ +..++. ++.....++|.....+.-.
T Consensus 575 y~~------------~~~~n~~v~~k~~a~-~t~gfs~~~L~~l~~~~s~ 611 (953)
T KOG0736|consen 575 YLN------------HLPLNQDVNLKQLAR-KTSGFSFGDLEALVAHSSL 611 (953)
T ss_pred HHh------------ccccchHHHHHHHHH-hcCCCCHHHHHHHhcCchH
Confidence 863 13455444 334444 4444556677666666633
No 201
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.1e-09 Score=128.27 Aligned_cols=202 Identities=22% Similarity=0.287 Sum_probs=140.3
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchhhh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 382 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~~l 382 (828)
+-++|.++-++++++.|..... .+-+|+|+||+|||.++..+|... +...+.++++.....
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K------NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAG--- 240 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK------NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAG--- 240 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC------CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcc---
Confidence 4588999999999998864322 234699999999999999999876 334555655554332
Q ss_pred ccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCC-----CChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVR-----GDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~-----~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.+|-|..+.++...+...... +.|+|||||+.+-..-. -|..|.|...|..+ .
T Consensus 241 ----akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-----------------e 299 (786)
T COG0542 241 ----AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-----------------E 299 (786)
T ss_pred ----ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-----------------C
Confidence 267777777777776654433 45899999999865331 23466666676643 2
Q ss_pred cEEEEecCCCC-----CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 457 VIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 457 viiI~TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
...|++|...+ .=|+||-+||..|.+..|+.++-..|++- +.+++...|+ +.++++++.+.+.-..++.
T Consensus 300 L~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG-lk~~yE~hH~-----V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 300 LRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG-LKERYEAHHG-----VRITDEALVAAVTLSDRYI 373 (786)
T ss_pred eEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH-HHHHHHHccC-----ceecHHHHHHHHHHHHhhc
Confidence 34566555443 56899999999999999999999999976 4566666664 6899999988776444444
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAAVK 550 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~~~ 550 (828)
.-|.|...--.++-+|+.+
T Consensus 374 ~dR~LPDKAIDLiDeA~a~ 392 (786)
T COG0542 374 PDRFLPDKAIDLLDEAGAR 392 (786)
T ss_pred ccCCCCchHHHHHHHHHHH
Confidence 4555544444444444443
No 202
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.14 E-value=2.5e-10 Score=108.99 Aligned_cols=144 Identities=26% Similarity=0.361 Sum_probs=89.7
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccC
Q 003349 317 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSM 393 (828)
Q Consensus 317 G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~ 393 (828)
|++.+.+.+...+.. ..+.+++++||||||||++++.+++.+ +.++..+++............ .+..
T Consensus 2 ~~~~~~~~i~~~~~~------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~ 71 (151)
T cd00009 2 GQEEAIEALREALEL------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL----FGHF 71 (151)
T ss_pred chHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH----hhhh
Confidence 556666666555432 245689999999999999999999998 777777776654332211110 0000
Q ss_pred cchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC--CCCc
Q 003349 394 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ--PIPP 471 (828)
Q Consensus 394 ~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~--~l~~ 471 (828)
. ..............++++||++.+.+.. ...+++.+....... ....++.+|+++|... .+++
T Consensus 72 ~-~~~~~~~~~~~~~~~lilDe~~~~~~~~----~~~~~~~i~~~~~~~---------~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 72 L-VRLLFELAEKAKPGVLFIDEIDSLSRGA----QNALLRVLETLNDLR---------IDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred h-HhHHHHhhccCCCeEEEEeChhhhhHHH----HHHHHHHHHhcCcee---------ccCCCeEEEEecCccccCCcCh
Confidence 0 0001111122335699999999984433 566677665421110 1134678899999887 7889
Q ss_pred cccCceE-EEEcCC
Q 003349 472 PLLDRME-VIELPG 484 (828)
Q Consensus 472 aLl~R~~-~i~~~~ 484 (828)
.+.+||+ .+.+++
T Consensus 138 ~~~~r~~~~i~~~~ 151 (151)
T cd00009 138 ALYDRLDIRIVIPL 151 (151)
T ss_pred hHHhhhccEeecCC
Confidence 9999995 677653
No 203
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1.1e-10 Score=128.01 Aligned_cols=159 Identities=20% Similarity=0.234 Sum_probs=104.2
Q ss_pred cccc-hHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCe--EEEecCCcCchhhhc-c-Ccc-
Q 003349 314 DHYG-LVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKF--IRISLGGVKDEADIR-G-HRR- 387 (828)
Q Consensus 314 ~i~G-~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~--~~i~~~~~~~~~~l~-g-~~~- 387 (828)
.++| |+.+++.+...+... .-++.+||+||+|+|||++|+++|+.+...- ....|+.-.+...+. + ++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3556 999999888877532 2345679999999999999999999874321 000111100000000 0 000
Q ss_pred ccc---ccC--cchHHHHH---HhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 388 TYI---GSM--PGRLIDGL---KRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 388 ~~v---g~~--~g~l~~~~---~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
.++ |.. -..+++.. ...+. ...|++|||+|.+.... +|+|+..|++. ..++
T Consensus 81 ~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a----~NaLLK~LEEP---------------p~~~ 141 (329)
T PRK08058 81 HLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASA----ANSLLKFLEEP---------------SGGT 141 (329)
T ss_pred EEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHH----HHHHHHHhcCC---------------CCCc
Confidence 000 111 11333332 22222 23499999999998766 89999999863 3467
Q ss_pred EEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHH
Q 003349 458 IFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMR 496 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~ 496 (828)
+||++|+.+..+.|.++||+.+++|++++.++..++++.
T Consensus 142 ~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 142 TAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred eEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 888899889999999999999999999999988776654
No 204
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.7e-10 Score=121.18 Aligned_cols=211 Identities=19% Similarity=0.237 Sum_probs=138.7
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCC-----eEEEecCCcCchhhhccCcc--
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK-----FIRISLGGVKDEADIRGHRR-- 387 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~-----~~~i~~~~~~~~~~l~g~~~-- 387 (828)
+.+.++.++++..++..... ...+.+++++||||||||.+++.+++.+... +..++|-....+..+...-.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 44667777777776654333 2344569999999999999999999998433 78899888776655443211
Q ss_pred ----cccccCcchHHHHHHhc---CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEE
Q 003349 388 ----TYIGSMPGRLIDGLKRV---GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFV 460 (828)
Q Consensus 388 ----~~vg~~~g~l~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI 460 (828)
...|.....+.+.+... .....|++|||+|.+.... ...|++++...... ..++.+|
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~----~~~LY~L~r~~~~~------------~~~v~vi 160 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD----GEVLYSLLRAPGEN------------KVKVSII 160 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc----chHHHHHHhhcccc------------ceeEEEE
Confidence 12233333333333221 2223489999999998765 36666666532111 3457899
Q ss_pred EecCCCC---CCCccccCceE--EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 461 ATANRAQ---PIPPPLLDRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 461 ~TtN~~~---~l~~aLl~R~~--~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
+.+|..+ .+++.+.+||. .|.|++|+.+|...|+..... .++. .-.++++++..++.......| +
T Consensus 161 ~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~------~~~~--~~~~~~~vl~lia~~~a~~~G--D 230 (366)
T COG1474 161 AVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVE------EGFS--AGVIDDDVLKLIAALVAAESG--D 230 (366)
T ss_pred EEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHH------hhcc--CCCcCccHHHHHHHHHHHcCc--c
Confidence 9999874 88999999984 699999999999999998753 2222 346788999888875554444 2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003349 536 LERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 536 l~~~i~~l~~~a~~~~l~~ 554 (828)
. |.--.+||.|+.-+-++
T Consensus 231 A-R~aidilr~A~eiAe~~ 248 (366)
T COG1474 231 A-RKAIDILRRAGEIAERE 248 (366)
T ss_pred H-HHHHHHHHHHHHHHHhh
Confidence 2 33445666666554443
No 205
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.12 E-value=2.8e-10 Score=129.44 Aligned_cols=171 Identities=13% Similarity=0.227 Sum_probs=109.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhC-----CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~-----~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
..++|+||+|+|||+|++++++.+. ..+..+++..... .+.. . .+...+.+ +.++..-....+|+|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~--~~~~---~-l~~~~~~~-~~~~~~~~~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR--KAVD---I-LQKTHKEI-EQFKNEICQNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH--HHHH---H-HHHhhhHH-HHHHHHhccCCEEEEec
Confidence 4588999999999999999998662 2333333322111 1100 0 00000112 22332222356999999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC----CCCccccCceE---EEEcCCCCHH
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----PIPPPLLDRME---VIELPGYTPE 488 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~----~l~~aLl~R~~---~i~~~~~~~e 488 (828)
++.+..+. ..+..|+.+++..... +-.+|+|+|.+. .+++.|.+||. ++.+.+|+.+
T Consensus 215 iq~l~~k~--~~~e~lf~l~N~~~~~--------------~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e 278 (450)
T PRK14087 215 VQFLSYKE--KTNEIFFTIFNNFIEN--------------DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNK 278 (450)
T ss_pred cccccCCH--HHHHHHHHHHHHHHHc--------------CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHH
Confidence 99886532 1256777777643221 114566766542 57899999996 6999999999
Q ss_pred HHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 489 EKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 489 e~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
++.+|+++.+. ..++ ...++++++++|+.++.+ .+|.+...+.++.
T Consensus 279 ~r~~iL~~~~~-----~~gl---~~~l~~evl~~Ia~~~~g--d~R~L~gaL~~l~ 324 (450)
T PRK14087 279 TATAIIKKEIK-----NQNI---KQEVTEEAINFISNYYSD--DVRKIKGSVSRLN 324 (450)
T ss_pred HHHHHHHHHHH-----hcCC---CCCCCHHHHHHHHHccCC--CHHHHHHHHHHHH
Confidence 99999998863 2222 137999999999998764 5677776666665
No 206
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.11 E-value=6.6e-10 Score=128.58 Aligned_cols=212 Identities=21% Similarity=0.289 Sum_probs=138.8
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCc---hhhhccCcc
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRR 387 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~---~~~l~g~~~ 387 (828)
+++|.....+.+...+.... .....+++.|++|||||++|+++..... .+|+.++|+.... .+.+.|+..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~ 214 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEK 214 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCC
Confidence 35566666666655554221 2345699999999999999999998763 5899999988643 234555443
Q ss_pred c-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC
Q 003349 388 T-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 466 (828)
Q Consensus 388 ~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~ 466 (828)
+ +.|..... ...+..+ .++.+|||||+.+.... +..|+++++..+...... ..+. ..++.+|+||+..
T Consensus 215 g~~~~~~~~~-~g~~~~a--~~Gtl~l~~i~~l~~~~----q~~L~~~l~~~~~~~~~~---~~~~-~~~~rii~~~~~~ 283 (469)
T PRK10923 215 GAFTGANTIR-QGRFEQA--DGGTLFLDEIGDMPLDV----QTRLLRVLADGQFYRVGG---YAPV-KVDVRIIAATHQN 283 (469)
T ss_pred CCCCCCCcCC-CCCeeEC--CCCEEEEeccccCCHHH----HHHHHHHHhcCcEEeCCC---CCeE-EeeEEEEEeCCCC
Confidence 2 22221100 0112222 25689999999999887 899999998643222111 1111 2367899998865
Q ss_pred -------CCCCccccCceE--EEEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 467 -------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 467 -------~~l~~aLl~R~~--~i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
..+.+.|..||. .|.+|++.. ++...++..++.. ....++. ....++++++..|.. |.+..++|.
T Consensus 284 l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~-~~~~~~~--~~~~~~~~a~~~L~~-~~wpgNv~e 359 (469)
T PRK10923 284 LEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQV-AARELGV--EAKLLHPETEAALTR-LAWPGNVRQ 359 (469)
T ss_pred HHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHH-HHHHcCC--CCCCcCHHHHHHHHh-CCCCChHHH
Confidence 368899999996 477777765 4555566666533 3333332 234689999987665 788889999
Q ss_pred HHHHHHHHH
Q 003349 536 LERNLAALA 544 (828)
Q Consensus 536 l~~~i~~l~ 544 (828)
|++.|+.++
T Consensus 360 L~~~i~~~~ 368 (469)
T PRK10923 360 LENTCRWLT 368 (469)
T ss_pred HHHHHHHHH
Confidence 998888876
No 207
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.11 E-value=5.9e-10 Score=127.54 Aligned_cols=162 Identities=26% Similarity=0.318 Sum_probs=97.2
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCcCchhhhcc-----C
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADIRG-----H 385 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~~~~~~l~g-----~ 385 (828)
.+++||+.+++.+...+ ..+.+++|+||||||||+++++++..+..... .+..+...+...... .
T Consensus 192 ~dv~Gq~~~~~al~~aa--------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~ 263 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAA--------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIK 263 (499)
T ss_pred HHhcCcHHHHhhhhhhc--------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccc
Confidence 45789998877664433 35578999999999999999999987743211 222222211100000 0
Q ss_pred cccc------------cccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec
Q 003349 386 RRTY------------IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 386 ~~~~------------vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
.+.| +|.....-...+..+ .++++||||++.+.+.. ++.|++.|+..+... ........ -
T Consensus 264 ~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA--~~GvLfLDEi~e~~~~~----~~~L~~~LE~~~v~i-~r~g~~~~-~ 335 (499)
T TIGR00368 264 QRPFRSPHHSASKPALVGGGPIPLPGEISLA--HNGVLFLDELPEFKRSV----LDALREPIEDGSISI-SRASAKIF-Y 335 (499)
T ss_pred cCCccccccccchhhhhCCccccchhhhhcc--CCCeEecCChhhCCHHH----HHHHHHHHHcCcEEE-EecCccee-c
Confidence 0011 111000000122222 35799999999998776 899999998653211 11111111 2
Q ss_pred CCCcEEEEecCCC------C-----------------CCCccccCceE-EEEcCCCCHHHH
Q 003349 454 LSKVIFVATANRA------Q-----------------PIPPPLLDRME-VIELPGYTPEEK 490 (828)
Q Consensus 454 ~~~viiI~TtN~~------~-----------------~l~~aLl~R~~-~i~~~~~~~ee~ 490 (828)
..++.+|+++|+- . .++.+|+|||+ .+.+++++.+++
T Consensus 336 pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 336 PARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred cCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 3578999999973 1 59999999999 588888776543
No 208
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.10 E-value=1.3e-09 Score=111.00 Aligned_cols=178 Identities=22% Similarity=0.258 Sum_probs=117.2
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC---CeEEEecCCcCchhhhccCcccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR---KFIRISLGGVKDEADIRGHRRTY 389 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~---~~~~i~~~~~~~~~~l~g~~~~~ 389 (828)
++++|.+..++.+.+....-.. ..+..++||+|++|||||++++++...+.. .++.+.-.++.+.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l---------- 94 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL---------- 94 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH----------
Confidence 3478999999999876643222 235568999999999999999999998844 3333332222211
Q ss_pred cccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCC
Q 003349 390 IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPI 469 (828)
Q Consensus 390 vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l 469 (828)
..+.+.++..+ ..-|||+|++. .+........|-.+||+.- .-...|++|.+|+|+-..+
T Consensus 95 -----~~l~~~l~~~~-~kFIlf~DDLs---Fe~~d~~yk~LKs~LeGgl-----------e~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 95 -----PELLDLLRDRP-YKFILFCDDLS---FEEGDTEYKALKSVLEGGL-----------EARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -----HHHHHHHhcCC-CCEEEEecCCC---CCCCcHHHHHHHHHhcCcc-----------ccCCCcEEEEEecchhhcc
Confidence 23445555433 23499999854 3333334788888888532 2236789999999986422
Q ss_pred Cc-----------------------cccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHH
Q 003349 470 PP-----------------------PLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ 525 (828)
Q Consensus 470 ~~-----------------------aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~ 525 (828)
++ +|-+||- .|.|.+++.++=.+|++.++. . .++.++++.+..-+.
T Consensus 155 ~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~-----~-----~g~~~~~e~l~~~Al 224 (249)
T PF05673_consen 155 PESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAE-----R-----YGLELDEEELRQEAL 224 (249)
T ss_pred chhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHH
Confidence 11 3457996 799999999999999998852 2 245677655555555
Q ss_pred Hhhhhhc
Q 003349 526 RYTREAG 532 (828)
Q Consensus 526 ~~~~~~g 532 (828)
.|...-|
T Consensus 225 ~wa~~rg 231 (249)
T PF05673_consen 225 QWALRRG 231 (249)
T ss_pred HHHHHcC
Confidence 5554333
No 209
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.10 E-value=7.9e-10 Score=129.74 Aligned_cols=175 Identities=22% Similarity=0.277 Sum_probs=111.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCC--CeEEEecCCcCchhhhccCcccc----cc---cCcchHHHHHHhcCCCCcE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGR--KFIRISLGGVKDEADIRGHRRTY----IG---SMPGRLIDGLKRVGVCNPV 410 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~--~~~~i~~~~~~~~~~l~g~~~~~----vg---~~~g~l~~~~~~~~~~~~v 410 (828)
-.++||.|+||||||++|+++++.++. +|+++.++. ....+.|...-+ -| ..+|.+ .. ..+++
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~--t~d~L~G~idl~~~~~~g~~~~~~G~L----~~--A~~Gv 87 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGV--TEDRLIGGIDVEESLAGGQRVTQPGLL----DE--APRGV 87 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCccc--chhhcccchhhhhhhhcCcccCCCCCe----ee--CCCCc
Confidence 457999999999999999999999865 477776532 122232221000 00 011111 11 23569
Q ss_pred EEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC---CCCccccCceEE-EEcC-CC
Q 003349 411 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRMEV-IELP-GY 485 (828)
Q Consensus 411 l~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~---~l~~aLl~R~~~-i~~~-~~ 485 (828)
+|+|||+.+.+.. ++.|++.|++++...-.+. .... ...++.+|+|+|+.+ .++++|++||.+ |.+. .+
T Consensus 88 L~lDEi~rl~~~~----q~~Ll~al~~g~v~i~r~G-~~~~-~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~ 161 (589)
T TIGR02031 88 LYVDMANLLDDGL----SNRLLQALDEGVVIVEREG-ISVV-HPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVA 161 (589)
T ss_pred EeccchhhCCHHH----HHHHHHHHHcCCeEEEECC-Ccee-ecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCC
Confidence 9999999999887 9999999987643221111 1111 134688999999875 899999999973 5554 45
Q ss_pred CHHHHHHHHHHhhcH-------------HHHHhcCCCCcccccCHHHHHHHHHHhh
Q 003349 486 TPEEKLRIAMRHLIP-------------RVLDQHGLGSEFLQIPEAMVKLVIQRYT 528 (828)
Q Consensus 486 ~~ee~~~Il~~~l~~-------------~~~~~~~~~~~~~~i~~~~l~~l~~~~~ 528 (828)
+.+++.+|++..+.. ..+....-....+.++++++.++++.+.
T Consensus 162 ~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~ 217 (589)
T TIGR02031 162 SQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAA 217 (589)
T ss_pred CHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHH
Confidence 667788888775410 0011111113357899999999998554
No 210
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.09 E-value=7.1e-10 Score=112.48 Aligned_cols=179 Identities=21% Similarity=0.255 Sum_probs=119.2
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh-CC--CeEEEecCCc-------------Cc
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-GR--KFIRISLGGV-------------KD 378 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l-~~--~~~~i~~~~~-------------~~ 378 (828)
+.+.++....+..... ...-+++++|||+|+||-|.+.++-+.+ |. .-.++....+ .+
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 3445555454443321 1334799999999999999999998877 32 1122221111 11
Q ss_pred hhhhccCcccccccCcchHH-HHHHhc----------CCCCcEEEEecccccCCCCCCChHHHHHHhcCccccccccccc
Q 003349 379 EADIRGHRRTYIGSMPGRLI-DGLKRV----------GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY 447 (828)
Q Consensus 379 ~~~l~g~~~~~vg~~~g~l~-~~~~~~----------~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~ 447 (828)
...+.-.+ .-.|.....+. +.++.. ...-.|++|.|.|.+..+. |.+|..-|+..
T Consensus 89 ~yHlEitP-SDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dA----Q~aLRRTMEkY--------- 154 (351)
T KOG2035|consen 89 NYHLEITP-SDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDA----QHALRRTMEKY--------- 154 (351)
T ss_pred cceEEeCh-hhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHH----HHHHHHHHHHH---------
Confidence 11111111 12333332222 222221 1122399999999999877 99999988742
Q ss_pred CCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHh
Q 003349 448 LNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 527 (828)
Q Consensus 448 ~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~ 527 (828)
.+++.+|+.+|..+.+-+++++||-.|.+|.|+.++...++...+. ++++.++++.+..+++..
T Consensus 155 ------s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~----------kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 155 ------SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLK----------KEGLQLPKELLKRIAEKS 218 (351)
T ss_pred ------hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHH----------HhcccCcHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999988753 456788999999888765
Q ss_pred hh
Q 003349 528 TR 529 (828)
Q Consensus 528 ~~ 529 (828)
.+
T Consensus 219 ~~ 220 (351)
T KOG2035|consen 219 NR 220 (351)
T ss_pred cc
Confidence 43
No 211
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.09 E-value=1.1e-09 Score=123.20 Aligned_cols=229 Identities=22% Similarity=0.245 Sum_probs=133.0
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCCC------CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcC
Q 003349 304 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDAR------GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVK 377 (828)
Q Consensus 304 l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~------~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~ 377 (828)
.+.+.+.+...|+|++++|+.++-.|-........+ .-++||+|.||||||.+.+.+++.+.+..+. +|..
T Consensus 420 y~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT---SGkG 496 (804)
T KOG0478|consen 420 YELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT---SGKG 496 (804)
T ss_pred HHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee---cCCc
Confidence 344566677889999999999987664432211112 2489999999999999999999998654442 2211
Q ss_pred chhhhccCcccccccCcchHHHHHHh----cCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeee-
Q 003349 378 DEADIRGHRRTYIGSMPGRLIDGLKR----VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF- 452 (828)
Q Consensus 378 ~~~~l~g~~~~~vg~~~g~l~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~- 452 (828)
+. ..|.. .|+...+. -.+.+.. --..+++..|||+||++.+. .+.|+++|+..... .... |.--
T Consensus 497 sS--avGLT-ayVtrd~d-tkqlVLesGALVLSD~GiCCIDEFDKM~dSt----rSvLhEvMEQQTvS--IAKA-GII~s 565 (804)
T KOG0478|consen 497 SS--AVGLT-AYVTKDPD-TRQLVLESGALVLSDNGICCIDEFDKMSDST----RSVLHEVMEQQTLS--IAKA-GIIAS 565 (804)
T ss_pred cc--hhcce-eeEEecCc-cceeeeecCcEEEcCCceEEchhhhhhhHHH----HHHHHHHHHHhhhh--Hhhc-ceeee
Confidence 10 00000 11111110 0011111 01236699999999998665 79999999854321 1111 2211
Q ss_pred cCCCcEEEEecCCCC-------------CCCccccCceEE--EEcCCCCHHHHHHHHHH----hhc----------H---
Q 003349 453 DLSKVIFVATANRAQ-------------PIPPPLLDRMEV--IELPGYTPEEKLRIAMR----HLI----------P--- 500 (828)
Q Consensus 453 ~~~~viiI~TtN~~~-------------~l~~aLl~R~~~--i~~~~~~~ee~~~Il~~----~l~----------~--- 500 (828)
-...+.|++++|+.. .++|.|++|||. +.++.+++..=+.+..+ |.. +
T Consensus 566 LNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~ 645 (804)
T KOG0478|consen 566 LNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNL 645 (804)
T ss_pred ccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHH
Confidence 134688999999764 799999999983 56777776522333222 211 0
Q ss_pred -HHHHhcCCCCcccccCHHHHHHHHHHhhh------hhc-hHHHHHHHHHHHHH
Q 003349 501 -RVLDQHGLGSEFLQIPEAMVKLVIQRYTR------EAG-VRNLERNLAALARA 546 (828)
Q Consensus 501 -~~~~~~~~~~~~~~i~~~~l~~l~~~~~~------~~g-~R~l~~~i~~l~~~ 546 (828)
+....+..+.....+++++...+...|-. ..| .-...+.++.++|-
T Consensus 646 lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRl 699 (804)
T KOG0478|consen 646 LRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRL 699 (804)
T ss_pred HHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHH
Confidence 01111222345678888888888875542 123 23344555555543
No 212
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.08 E-value=8.3e-10 Score=126.86 Aligned_cols=211 Identities=16% Similarity=0.231 Sum_probs=133.2
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCch---hhhccCccc
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDE---ADIRGHRRT 388 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~~---~~l~g~~~~ 388 (828)
++|.....+.+...+.... .....++++|++||||+++|+++..... .+++.++|....+. +.+.|+.+.
T Consensus 141 lig~s~~~~~l~~~i~~~a----~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~ 216 (445)
T TIGR02915 141 LITSSPGMQKICRTIEKIA----PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKG 216 (445)
T ss_pred eeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCC
Confidence 4555555555555443221 2345688999999999999999988763 58899999986432 233443322
Q ss_pred c-cccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-
Q 003349 389 Y-IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA- 466 (828)
Q Consensus 389 ~-vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~- 466 (828)
. .|... .....+..+ .++++|||||+.+++.. |..|+++++......... ... ...++.+|+|||..
T Consensus 217 ~~~~~~~-~~~g~~~~a--~~gtl~l~~i~~l~~~~----q~~l~~~l~~~~~~~~~~---~~~-~~~~~rii~~~~~~l 285 (445)
T TIGR02915 217 AFTGAVK-QTLGKIEYA--HGGTLFLDEIGDLPLNL----QAKLLRFLQERVIERLGG---REE-IPVDVRIVCATNQDL 285 (445)
T ss_pred CcCCCcc-CCCCceeEC--CCCEEEEechhhCCHHH----HHHHHHHHhhCeEEeCCC---Cce-eeeceEEEEecCCCH
Confidence 1 11111 001112222 35699999999999887 899999998543211111 111 12367889998876
Q ss_pred ------CCCCccccCceE--EEEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 467 ------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 467 ------~~l~~aLl~R~~--~i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
..+.+.|..|+. .|.+|++.. ++...++..++. +....++ +....++++++..|.. |.+..++|.|
T Consensus 286 ~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~-~~~~~~~--~~~~~~~~~a~~~L~~-~~wpgNvreL 361 (445)
T TIGR02915 286 KRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLE-RFARELK--RKTKGFTDDALRALEA-HAWPGNVREL 361 (445)
T ss_pred HHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHH-HHHHHhC--CCCCCCCHHHHHHHHh-CCCCChHHHH
Confidence 478888889986 466676655 334445554443 3333322 2235789999988765 7778889999
Q ss_pred HHHHHHHH
Q 003349 537 ERNLAALA 544 (828)
Q Consensus 537 ~~~i~~l~ 544 (828)
++.|+..+
T Consensus 362 ~~~i~~a~ 369 (445)
T TIGR02915 362 ENKVKRAV 369 (445)
T ss_pred HHHHHHHH
Confidence 98888776
No 213
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=4.5e-10 Score=122.33 Aligned_cols=140 Identities=19% Similarity=0.284 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCcCchhhh-cc-Ccccc-c-----cc--CcchHHHH---HHh
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADI-RG-HRRTY-I-----GS--MPGRLIDG---LKR 403 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~~~~~~l-~g-~~~~~-v-----g~--~~g~l~~~---~~~ 403 (828)
-++.+||+||+|+|||++|+.+|+.+..... .-.|+.-.+...+ .| |+.-+ + +. .-..+++. +..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 3456999999999999999999998843210 0011110000000 00 00000 0 00 01233333 322
Q ss_pred cCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEE
Q 003349 404 VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIE 481 (828)
Q Consensus 404 ~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~ 481 (828)
.+. ...|++||++|++.... +|+|+..|++. ..+++||++|+.++.+.|.++|||..+.
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~a----aNaLLK~LEEP---------------p~~~~fiL~t~~~~~ll~TI~SRc~~~~ 161 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNA----ANALLKSLEEP---------------SGDTVLLLISHQPSRLLPTIKSRCQQQA 161 (328)
T ss_pred ccccCCCeEEEECChhhCCHHH----HHHHHHHHhCC---------------CCCeEEEEEECChhhCcHHHHhhceeee
Confidence 222 23399999999999876 89999999864 3467899999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHh
Q 003349 482 LPGYTPEEKLRIAMRH 497 (828)
Q Consensus 482 ~~~~~~ee~~~Il~~~ 497 (828)
|++++.++..+.+...
T Consensus 162 ~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 162 CPLPSNEESLQWLQQA 177 (328)
T ss_pred CCCcCHHHHHHHHHHh
Confidence 9999999888777654
No 214
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.07 E-value=8.7e-10 Score=127.94 Aligned_cols=208 Identities=20% Similarity=0.215 Sum_probs=124.6
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHHhhhCCCCC------CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCch
Q 003349 306 AAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDAR------GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDE 379 (828)
Q Consensus 306 ~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~------~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~ 379 (828)
.+.+.+...++|.+++|+.+.-++-..-...... --|+||+|.||||||.|.+.+++.+.+..+. +..+ .+.
T Consensus 279 ~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgkg-ss~ 356 (682)
T COG1241 279 ILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGKG-SSA 356 (682)
T ss_pred HHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE-cccc-ccc
Confidence 3445566789999999999876654322211111 2489999999999999999999988654432 1111 011
Q ss_pred hhhccCc--cccccc---CcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec-
Q 003349 380 ADIRGHR--RTYIGS---MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD- 453 (828)
Q Consensus 380 ~~l~g~~--~~~vg~---~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~- 453 (828)
..+.... ....|. ..| ++-.+ .++|.+|||+|++.... .+++++.|+..... ... .|+..-
T Consensus 357 ~GLTAav~rd~~tge~~LeaG----ALVlA--D~Gv~cIDEfdKm~~~d----r~aihEaMEQQtIs--IaK-AGI~atL 423 (682)
T COG1241 357 AGLTAAVVRDKVTGEWVLEAG----ALVLA--DGGVCCIDEFDKMNEED----RVAIHEAMEQQTIS--IAK-AGITATL 423 (682)
T ss_pred cCceeEEEEccCCCeEEEeCC----EEEEe--cCCEEEEEeccCCChHH----HHHHHHHHHhcEee--ecc-cceeeec
Confidence 1110000 000110 001 11112 36699999999998765 79999999854222 222 232222
Q ss_pred CCCcEEEEecCCCC-------------CCCccccCceEE--EEcCCCCHHHHHH----HHHHhh----------------
Q 003349 454 LSKVIFVATANRAQ-------------PIPPPLLDRMEV--IELPGYTPEEKLR----IAMRHL---------------- 498 (828)
Q Consensus 454 ~~~viiI~TtN~~~-------------~l~~aLl~R~~~--i~~~~~~~ee~~~----Il~~~l---------------- 498 (828)
...|.+++++|+.. +|+++|++|||. +..+.++.+.-.. |+..|.
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 36788999999985 799999999994 4445555533333 444442
Q ss_pred -------cHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 499 -------IPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 499 -------~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
.++..... -++..+.+++++.+.|.+.|..
T Consensus 504 ~~~~~~~lrkYI~YA-R~~v~P~lt~ea~e~l~~~Yv~ 540 (682)
T COG1241 504 EERDFELLRKYISYA-RKNVTPVLTEEAREELEDYYVE 540 (682)
T ss_pred ccCcHHHHHHHHHHH-hccCCcccCHHHHHHHHHHHHH
Confidence 11222211 1224478999999999997764
No 215
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.06 E-value=2.6e-09 Score=115.80 Aligned_cols=175 Identities=19% Similarity=0.234 Sum_probs=110.0
Q ss_pred hcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhh-------c
Q 003349 311 LDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI-------R 383 (828)
Q Consensus 311 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l-------~ 383 (828)
+..-++||+..+..+...... +.-.++|+.|+.||||||++|+|+..|..--....|.-..++..- .
T Consensus 15 pf~aivGqd~lk~aL~l~av~------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~ 88 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVD------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECR 88 (423)
T ss_pred chhhhcCchHHHHHHhhhhcc------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHH
Confidence 345578999988877543221 233468899999999999999999999533222222111111100 0
Q ss_pred ---------cCcccc-------cccCcc------hHHHHHHh----------cCCCCcEEEEecccccCCCCCCChHHHH
Q 003349 384 ---------GHRRTY-------IGSMPG------RLIDGLKR----------VGVCNPVMLLDEIDKTGSDVRGDPASAL 431 (828)
Q Consensus 384 ---------g~~~~~-------vg~~~g------~l~~~~~~----------~~~~~~vl~iDEid~l~~~~~~~~~~~L 431 (828)
-....| .|.+.. .+..+++. +..+.+|+++||++.+.... ++.|
T Consensus 89 ~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~l----vd~L 164 (423)
T COG1239 89 AKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHL----VDAL 164 (423)
T ss_pred hhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHH----HHHH
Confidence 000001 122222 12233332 12245699999999998776 9999
Q ss_pred HHhcCcccccccccccCCeee-cCCCcEEEEecCCCC-CCCccccCceE-EEEcCC-CCHHHHHHHHHHhh
Q 003349 432 LEVLDPEQNKTFNDHYLNVPF-DLSKVIFVATANRAQ-PIPPPLLDRME-VIELPG-YTPEEKLRIAMRHL 498 (828)
Q Consensus 432 l~~ld~~~~~~~~~~~~~~~~-~~~~viiI~TtN~~~-~l~~aLl~R~~-~i~~~~-~~~ee~~~Il~~~l 498 (828)
|.++.++.+..-.+ |..+ ...++++|+|+|+.+ .|.|.|++||. .+...+ .+.+++.+|+++.+
T Consensus 165 Ld~aaeG~n~vere---Gisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 165 LDVAAEGVNDVERE---GISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred HHHHHhCCceeeeC---ceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 99998764433223 3333 245789999999986 89999999996 566644 45588888887764
No 216
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.2e-10 Score=123.39 Aligned_cols=162 Identities=27% Similarity=0.360 Sum_probs=97.2
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCcCchhh-------hc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEAD-------IR 383 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~~~~~~-------l~ 383 (828)
.|++||+.+|+.+....+ .++++||+||||||||++|+.+...+..-.. .+..+.+.+... +.
T Consensus 179 ~DV~GQ~~AKrAleiAAA--------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~ 250 (490)
T COG0606 179 KDVKGQEQAKRALEIAAA--------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLK 250 (490)
T ss_pred hhhcCcHHHHHHHHHHHh--------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccc
Confidence 568999999999866543 5678999999999999999999988842100 011111100000 00
Q ss_pred cCccccc--ccCcchHHHHHHh---------cCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeee
Q 003349 384 GHRRTYI--GSMPGRLIDGLKR---------VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF 452 (828)
Q Consensus 384 g~~~~~v--g~~~g~l~~~~~~---------~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~ 452 (828)
.+ +.+. +.+ ......+-. ...+++|+||||+-...... .+.|.+-|+..+......+ ..+.+
T Consensus 251 ~~-rPFr~PHHs-aS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~i----Le~LR~PLE~g~i~IsRa~-~~v~y 323 (490)
T COG0606 251 IH-RPFRAPHHS-ASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSI----LEALREPLENGKIIISRAG-SKVTY 323 (490)
T ss_pred ee-CCccCCCcc-chHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHH----HHHHhCccccCcEEEEEcC-CeeEE
Confidence 00 0000 000 000111100 11246699999998877655 7888888876543322221 12223
Q ss_pred cCCCcEEEEecCCC-----------------------CCCCccccCceE-EEEcCCCCHHHH
Q 003349 453 DLSKVIFVATANRA-----------------------QPIPPPLLDRME-VIELPGYTPEEK 490 (828)
Q Consensus 453 ~~~~viiI~TtN~~-----------------------~~l~~aLl~R~~-~i~~~~~~~ee~ 490 (828)
..++.+++++|+- +.++.+|+||+| .++++.++..++
T Consensus 324 -pa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 324 -PARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred -eeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 4578899999975 278999999999 688888875443
No 217
>PRK15115 response regulator GlrR; Provisional
Probab=99.01 E-value=2.9e-09 Score=122.40 Aligned_cols=191 Identities=20% Similarity=0.291 Sum_probs=122.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCch---hhhccCcccc-cccCcchHHHHHHhcCCCCcEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDE---ADIRGHRRTY-IGSMPGRLIDGLKRVGVCNPVM 411 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~---~~l~g~~~~~-vg~~~g~l~~~~~~~~~~~~vl 411 (828)
....++++|++|||||++|+++.... +.+++.++|...... +.+.|+..+. .|... .....+..+ .++.+
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~-~~~g~~~~a--~~gtl 232 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVS-NREGLFQAA--EGGTL 232 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCcc-CCCCcEEEC--CCCEE
Confidence 34568899999999999999998876 468999999886432 2344443321 11111 001112222 25699
Q ss_pred EEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-------CCCCccccCceEE--EEc
Q 003349 412 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------QPIPPPLLDRMEV--IEL 482 (828)
Q Consensus 412 ~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-------~~l~~aLl~R~~~--i~~ 482 (828)
|||||+.+++.. |..|+++++......... . .....++.+|+||+.. ..+.+.|..|+.. |.+
T Consensus 233 ~l~~i~~l~~~~----q~~L~~~l~~~~~~~~g~---~-~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~l 304 (444)
T PRK15115 233 FLDEIGDMPAPL----QVKLLRVLQERKVRPLGS---N-RDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 (444)
T ss_pred EEEccccCCHHH----HHHHHHHHhhCCEEeCCC---C-ceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecC
Confidence 999999999887 899999998653221111 1 1112367899988864 2677888888875 555
Q ss_pred CCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 483 PGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 483 ~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
|++.. ++...+++.++. +....++ +....++++++..|.. |.|..++|.|++.|+.++
T Consensus 305 PpLr~R~eDi~~l~~~~l~-~~~~~~~--~~~~~~~~~a~~~L~~-~~WpgNvreL~~~i~~~~ 364 (444)
T PRK15115 305 PALAERTEDIPLLANHLLR-QAAERHK--PFVRAFSTDAMKRLMT-ASWPGNVRQLVNVIEQCV 364 (444)
T ss_pred CChHhccccHHHHHHHHHH-HHHHHhC--CCCCCcCHHHHHHHHh-CCCCChHHHHHHHHHHHH
Confidence 55544 233334455443 2222222 1223689999998775 788889999999988876
No 218
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.01 E-value=3e-09 Score=122.72 Aligned_cols=211 Identities=18% Similarity=0.259 Sum_probs=131.2
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCch---hhhccCccc
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDE---ADIRGHRRT 388 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~---~~l~g~~~~ 388 (828)
++|.......+.+.+.... .....+++.|++||||+++|+++.... +.+++.++|...... +.+.|+...
T Consensus 145 ii~~S~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~ 220 (457)
T PRK11361 145 ILTNSPAMMDICKDTAKIA----LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKG 220 (457)
T ss_pred eecccHHHhHHHHHHHHHc----CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCC
Confidence 4454444444444433222 234578999999999999999998765 468899999886432 334443322
Q ss_pred -ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-
Q 003349 389 -YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA- 466 (828)
Q Consensus 389 -~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~- 466 (828)
+.|..... ...+..+ .++++|||||+.+.+.. +..|+++++....... ...... ..++.+|+|||..
T Consensus 221 ~~~~~~~~~-~g~~~~a--~~gtl~ld~i~~l~~~~----q~~L~~~l~~~~~~~~---~~~~~~-~~~~rii~~t~~~l 289 (457)
T PRK11361 221 AFTGAQTLR-QGLFERA--NEGTLLLDEIGEMPLVL----QAKLLRILQEREFERI---GGHQTI-KVDIRIIAATNRDL 289 (457)
T ss_pred CCCCCCCCC-CCceEEC--CCCEEEEechhhCCHHH----HHHHHHHHhcCcEEeC---CCCcee-eeceEEEEeCCCCH
Confidence 11111100 1122222 25699999999999887 8999999986432111 111111 2357899999865
Q ss_pred ------CCCCccccCceEE--EEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 467 ------QPIPPPLLDRMEV--IELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 467 ------~~l~~aLl~R~~~--i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
..+.+.|..|+.. |.+|++.. ++...++..++. +.....+ .....++++++..+.. |.+..++|.|
T Consensus 290 ~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~-~~~~~~~--~~~~~~~~~a~~~L~~-~~wpgNv~eL 365 (457)
T PRK11361 290 QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQ-KFSSENQ--RDIIDIDPMAMSLLTA-WSWPGNIREL 365 (457)
T ss_pred HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHH-HHHHHcC--CCCCCcCHHHHHHHHc-CCCCCcHHHH
Confidence 3688888889864 56666553 334444444443 3333222 2235789999987665 7888899999
Q ss_pred HHHHHHHH
Q 003349 537 ERNLAALA 544 (828)
Q Consensus 537 ~~~i~~l~ 544 (828)
++.|+..+
T Consensus 366 ~~~~~~~~ 373 (457)
T PRK11361 366 SNVIERAV 373 (457)
T ss_pred HHHHHHHH
Confidence 98888866
No 219
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.99 E-value=2.2e-09 Score=118.00 Aligned_cols=174 Identities=21% Similarity=0.279 Sum_probs=114.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCC---CeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecc
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGR---KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 416 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~---~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEi 416 (828)
...++||||+|.|||+|++++++.... ....+.++...-.. .++-.....-.+.|+..- .-.+++||+|
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~-------~~v~a~~~~~~~~Fk~~y-~~dlllIDDi 184 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN-------DFVKALRDNEMEKFKEKY-SLDLLLIDDI 184 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH-------HHHHHHHhhhHHHHHHhh-ccCeeeechH
Confidence 446889999999999999999988732 22233322211000 111111112223444444 4559999999
Q ss_pred cccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC-CCC---CCCccccCceE---EEEcCCCCHHH
Q 003349 417 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN-RAQ---PIPPPLLDRME---VIELPGYTPEE 489 (828)
Q Consensus 417 d~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN-~~~---~l~~aLl~R~~---~i~~~~~~~ee 489 (828)
+.+..+.+ .+..|+..+..... ..+ .+|+|+. .|. .+.|.|.+||. ++.+.+|+.+.
T Consensus 185 q~l~gk~~--~qeefFh~FN~l~~-------------~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 185 QFLAGKER--TQEEFFHTFNALLE-------------NGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred hHhcCChh--HHHHHHHHHHHHHh-------------cCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 99887532 25666666543211 112 4555554 443 56699999996 69999999999
Q ss_pred HHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q 003349 490 KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAV 549 (828)
Q Consensus 490 ~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~ 549 (828)
+..|+.+... ..++.++++++.+++.+..+ ++|.|+..+.++...+..
T Consensus 249 r~aiL~kka~----------~~~~~i~~ev~~~la~~~~~--nvReLegaL~~l~~~a~~ 296 (408)
T COG0593 249 RLAILRKKAE----------DRGIEIPDEVLEFLAKRLDR--NVRELEGALNRLDAFALF 296 (408)
T ss_pred HHHHHHHHHH----------hcCCCCCHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHh
Confidence 9999998531 34578999999999998764 788999999988865543
No 220
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.98 E-value=4.9e-09 Score=121.14 Aligned_cols=211 Identities=20% Similarity=0.263 Sum_probs=136.9
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCc---hhhhccCccc
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHRRT 388 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~---~~~l~g~~~~ 388 (828)
++|.......+...+.... .....+++.|++||||+++|+++.... +.+++.++|....+ .+.+.|+.+.
T Consensus 136 lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~ 211 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKG 211 (463)
T ss_pred eeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCC
Confidence 4555555555555543321 234568999999999999999998875 45899999988643 2234443321
Q ss_pred -ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-
Q 003349 389 -YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA- 466 (828)
Q Consensus 389 -~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~- 466 (828)
+.|.... ....+..+ .++.+|||||+.++... +..|+++++......... .... ..++.+|+|||..
T Consensus 212 ~~~~~~~~-~~g~~~~a--~~gtl~l~ei~~l~~~~----q~~ll~~l~~~~~~~~~~---~~~~-~~~~rii~~~~~~l 280 (463)
T TIGR01818 212 AFTGANTR-RQGRFEQA--DGGTLFLDEIGDMPLDA----QTRLLRVLADGEFYRVGG---RTPI-KVDVRIVAATHQNL 280 (463)
T ss_pred CCCCcccC-CCCcEEEC--CCCeEEEEchhhCCHHH----HHHHHHHHhcCcEEECCC---Ccee-eeeeEEEEeCCCCH
Confidence 1121110 01112222 25689999999999877 899999998543221111 1111 2256788888865
Q ss_pred ------CCCCccccCceE--EEEcCCCC--HHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 467 ------QPIPPPLLDRME--VIELPGYT--PEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 467 ------~~l~~aLl~R~~--~i~~~~~~--~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
..+.+.|..|+. .|.+|++. .++...++..++.. ....++ .....++++++..|.. |.+..++|.|
T Consensus 281 ~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~-~~~~~~--~~~~~~~~~a~~~L~~-~~wpgNvreL 356 (463)
T TIGR01818 281 EALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLAL-AARELD--VEPKLLDPEALERLKQ-LRWPGNVRQL 356 (463)
T ss_pred HHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHH-HHHHhC--CCCCCcCHHHHHHHHh-CCCCChHHHH
Confidence 367788889986 58888887 46777777776643 223332 2234689999998776 6788899999
Q ss_pred HHHHHHHH
Q 003349 537 ERNLAALA 544 (828)
Q Consensus 537 ~~~i~~l~ 544 (828)
++.++..+
T Consensus 357 ~~~~~~~~ 364 (463)
T TIGR01818 357 ENLCRWLT 364 (463)
T ss_pred HHHHHHHH
Confidence 88888776
No 221
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.97 E-value=4.5e-09 Score=117.44 Aligned_cols=212 Identities=18% Similarity=0.218 Sum_probs=128.3
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhhCC------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcC
Q 003349 304 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKP------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVK 377 (828)
Q Consensus 304 l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~ 377 (828)
+..+-..|...|+|.+.+|..|.-.+-..-.+. -..-.++|++|.||+|||-+.++.+..+.+..+. ++...
T Consensus 336 y~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt--sGkaS 413 (764)
T KOG0480|consen 336 YKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT--SGKAS 413 (764)
T ss_pred HHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe--cCccc
Confidence 345556677889999999999976664321111 1223489999999999999999999998766552 11111
Q ss_pred chhhhccCcccccccCcchHHH--HHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCC
Q 003349 378 DEADIRGHRRTYIGSMPGRLID--GLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 378 ~~~~l~g~~~~~vg~~~g~l~~--~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
+...+.-..-+ -+++.....+ ++--+ .++|-.|||+||+.-+. +.++++.|+... -.........+. ..
T Consensus 414 SaAGLTaaVvk-D~esgdf~iEAGALmLA--DnGICCIDEFDKMd~~d----qvAihEAMEQQt-ISIaKAGv~aTL-nA 484 (764)
T KOG0480|consen 414 SAAGLTAAVVK-DEESGDFTIEAGALMLA--DNGICCIDEFDKMDVKD----QVAIHEAMEQQT-ISIAKAGVVATL-NA 484 (764)
T ss_pred ccccceEEEEe-cCCCCceeeecCcEEEc--cCceEEechhcccChHh----HHHHHHHHHhhe-ehheecceEEee-cc
Confidence 11111100000 0000000001 11112 36799999999998755 899999998532 222222222222 24
Q ss_pred CcEEEEecCCCC-------------CCCccccCceE--EEEcCCCCHHHHHHHHHHhhc--------------------H
Q 003349 456 KVIFVATANRAQ-------------PIPPPLLDRME--VIELPGYTPEEKLRIAMRHLI--------------------P 500 (828)
Q Consensus 456 ~viiI~TtN~~~-------------~l~~aLl~R~~--~i~~~~~~~ee~~~Il~~~l~--------------------~ 500 (828)
...||+++|+.. .+++++++||| +|-++.+++..=..|..+.+. .
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vr 564 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVR 564 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHH
Confidence 578899999874 79999999998 477788887655554443321 1
Q ss_pred HHHHhcCCCCcccccCHHHHHHHHHHhh
Q 003349 501 RVLDQHGLGSEFLQIPEAMVKLVIQRYT 528 (828)
Q Consensus 501 ~~~~~~~~~~~~~~i~~~~l~~l~~~~~ 528 (828)
+++.... ...+.++.++-+.+.+.|-
T Consensus 565 kYi~yAR--~~~P~ls~ea~~~lve~Y~ 590 (764)
T KOG0480|consen 565 KYIRYAR--NFKPKLSKEASEMLVEKYK 590 (764)
T ss_pred HHHHHHH--hcCccccHHHHHHHHHHHH
Confidence 1222111 3456788888888887664
No 222
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.96 E-value=1.5e-09 Score=123.47 Aligned_cols=160 Identities=25% Similarity=0.321 Sum_probs=98.1
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCcCchhhhcc-----C
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADIRG-----H 385 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~~~~~~l~g-----~ 385 (828)
.+++|+..+++.+.-.+ ..+.+++|+||||+|||++++.++..+...-. .+.++.+.+...... .
T Consensus 191 ~~v~Gq~~~~~al~laa--------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~ 262 (506)
T PRK09862 191 SDVIGQEQGKRGLEITA--------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWR 262 (506)
T ss_pred EEEECcHHHHhhhheec--------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcC
Confidence 35778887777653221 35779999999999999999999998853222 233333222111100 0
Q ss_pred cccc------------cccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec
Q 003349 386 RRTY------------IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 386 ~~~~------------vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
.+.| +|.....-...+..+ .++++|+||++.+.+.. ++.|++.|+..+... ........ .
T Consensus 263 ~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A--~gGvLfLDEi~e~~~~~----~~~L~~~LE~g~v~I-~r~g~~~~-~ 334 (506)
T PRK09862 263 QRPFRSPHHSASLTAMVGGGAIPGPGEISLA--HNGVLFLDELPEFERRT----LDALREPIESGQIHL-SRTRAKIT-Y 334 (506)
T ss_pred CCCccCCCccchHHHHhCCCceehhhHhhhc--cCCEEecCCchhCCHHH----HHHHHHHHHcCcEEE-ecCCccee-c
Confidence 0111 111000001123333 35699999999988766 899999998654211 11111111 2
Q ss_pred CCCcEEEEecCCCC---------------------CCCccccCceE-EEEcCCCCHH
Q 003349 454 LSKVIFVATANRAQ---------------------PIPPPLLDRME-VIELPGYTPE 488 (828)
Q Consensus 454 ~~~viiI~TtN~~~---------------------~l~~aLl~R~~-~i~~~~~~~e 488 (828)
..++.+|+|+|+.. .++.+++|||+ .+.+++++.+
T Consensus 335 pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 335 PARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 45789999999852 48889999999 4889888654
No 223
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=7.1e-09 Score=112.17 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=93.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCe--EEEecCCcCchhhh-c-cCcccc-c----ccC--cchHHH---HHHhc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKF--IRISLGGVKDEADI-R-GHRRTY-I----GSM--PGRLID---GLKRV 404 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~--~~i~~~~~~~~~~l-~-g~~~~~-v----g~~--~g~l~~---~~~~~ 404 (828)
-++.+||+||+|+||+++|+.+|+.+.... ..-.|+.-.+...+ . .|+.-+ + |.. -..+++ .+...
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 345789999999999999999999884321 00112111000000 0 011000 0 110 112333 23223
Q ss_pred CC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEc
Q 003349 405 GV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIEL 482 (828)
Q Consensus 405 ~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~ 482 (828)
+. ...|++||++|++.... +|+||+.|++. ..+++||++|+.++.+.|.++|||..+.|
T Consensus 103 ~~~g~~KV~iI~~a~~m~~~A----aNaLLKtLEEP---------------p~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTEAA----ANALLKTLEEP---------------RPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred cccCCceEEEEechhhhCHHH----HHHHHHHhcCC---------------CCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 32 22399999999999776 89999999964 45779999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHh
Q 003349 483 PGYTPEEKLRIAMRH 497 (828)
Q Consensus 483 ~~~~~ee~~~Il~~~ 497 (828)
++++.++..+.+...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999888777654
No 224
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.3e-09 Score=117.44 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=124.2
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCC----eEEEecCCcCchhhhccCccccc
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK----FIRISLGGVKDEADIRGHRRTYI 390 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~----~~~i~~~~~~~~~~l~g~~~~~v 390 (828)
++-...+++...+.. ..+-....++||+||+|+|||.|++++++.+..+ +..++|+.....+ .
T Consensus 410 ~i~~~s~kke~~n~~----~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~---------~ 476 (952)
T KOG0735|consen 410 FIQVPSYKKENANQE----LSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS---------L 476 (952)
T ss_pred eeecchhhhhhhhhh----cccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh---------H
Confidence 344444555444422 2233456789999999999999999999998643 3456666643211 1
Q ss_pred ccCcchHHHHHHhcCCC-CcEEEEecccccCCCC-C-CCh-------HHH-HHHhcCcccccccccccCCeeecCCCcEE
Q 003349 391 GSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDV-R-GDP-------ASA-LLEVLDPEQNKTFNDHYLNVPFDLSKVIF 459 (828)
Q Consensus 391 g~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~-~-~~~-------~~~-Ll~~ld~~~~~~~~~~~~~~~~~~~~vii 459 (828)
......+...|..+-.. +.|++||++|.+.... . +.+ .+. |.+++.. |.. +.+.+.|
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~-----y~~-------~~~~ia~ 544 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKI-----YLK-------RNRKIAV 544 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHH-----HHc-------cCcEEEE
Confidence 11112344455444333 4599999999987622 1 111 122 2244331 111 1234789
Q ss_pred EEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 460 VATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 460 I~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
|+|.+....++|-|.+ +|+ ++.+++|...+|.+|++..+.+.+ .....+.++.++..+ .++-+++|
T Consensus 545 Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~----------~~~~~~dLd~ls~~T-EGy~~~DL 613 (952)
T KOG0735|consen 545 IATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL----------SDITMDDLDFLSVKT-EGYLATDL 613 (952)
T ss_pred EEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh----------hhhhhHHHHHHHHhc-CCccchhH
Confidence 9999999999998887 777 699999999999999998875433 233444555555443 44567777
Q ss_pred HHHHHHHHHHHH
Q 003349 537 ERNLAALARAAA 548 (828)
Q Consensus 537 ~~~i~~l~~~a~ 548 (828)
.-.+++++.+|.
T Consensus 614 ~ifVeRai~~a~ 625 (952)
T KOG0735|consen 614 VIFVERAIHEAF 625 (952)
T ss_pred HHHHHHHHHHHH
Confidence 777777776655
No 225
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.96 E-value=5.2e-09 Score=125.12 Aligned_cols=149 Identities=29% Similarity=0.483 Sum_probs=115.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccccc--cc---CcchHHHHHHhcCCCCcEEEEe
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYI--GS---MPGRLIDGLKRVGVCNPVMLLD 414 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~v--g~---~~g~l~~~~~~~~~~~~vl~iD 414 (828)
+..+||-|.||+|||++..++|+..|...++++++..++.-++.|....-- |+ ....+..+++. +.-+++|
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~----G~WVlLD 1618 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD----GGWVLLD 1618 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc----CCEEEee
Confidence 356899999999999999999999999999999999999888888643321 11 22344555554 4589999
Q ss_pred cccccCCCCCCChHHHHHHhcCcccccccccccCCeeec-CCCcEEEEecCCCC------CCCccccCceEEEEcCCCCH
Q 003349 415 EIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD-LSKVIFVATANRAQ------PIPPPLLDRMEVIELPGYTP 487 (828)
Q Consensus 415 Eid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~-~~~viiI~TtN~~~------~l~~aLl~R~~~i~~~~~~~ 487 (828)
|++-++.++ ...|...||.+. ..|.... ...++ ..++.|.+|-|+.+ .+|..|++||.+|.+..++.
T Consensus 1619 EiNLaSQSV----lEGLNacLDhR~-eayIPEl-d~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~ 1692 (4600)
T COG5271 1619 EINLASQSV----LEGLNACLDHRR-EAYIPEL-DKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTT 1692 (4600)
T ss_pred hhhhhHHHH----HHHHHHHHhhcc-ccccccc-cceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEeccccc
Confidence 999988766 777788888543 3343332 22333 46788999999875 89999999999999999999
Q ss_pred HHHHHHHHHhh
Q 003349 488 EEKLRIAMRHL 498 (828)
Q Consensus 488 ee~~~Il~~~l 498 (828)
+++..|++...
T Consensus 1693 dDi~~Ia~~~y 1703 (4600)
T COG5271 1693 DDITHIANKMY 1703 (4600)
T ss_pred chHHHHHHhhC
Confidence 99999998764
No 226
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.96 E-value=8e-09 Score=105.35 Aligned_cols=89 Identities=28% Similarity=0.404 Sum_probs=71.8
Q ss_pred CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-------------CCCCccc
Q 003349 407 CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------------QPIPPPL 473 (828)
Q Consensus 407 ~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-------------~~l~~aL 473 (828)
.++|+||||++.+.-+. +.-|.+.|+.. . .-++|+++|+. ..+++.|
T Consensus 296 vPGVLFIDEVhMLDiEc----FTyL~kalES~---------------i-aPivifAsNrG~~~irGt~d~~sPhGip~dl 355 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDIEC----FTYLHKALESP---------------I-APIVIFASNRGMCTIRGTEDILSPHGIPPDL 355 (456)
T ss_pred cCcceEeeehhhhhhHH----HHHHHHHhcCC---------------C-CceEEEecCCcceeecCCcCCCCCCCCCHHH
Confidence 45599999999998766 77788888742 1 23677788875 3789999
Q ss_pred cCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHH
Q 003349 474 LDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ 525 (828)
Q Consensus 474 l~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~ 525 (828)
++|+-+|..-+|+.++.++|++... +.+++.++++++..+..
T Consensus 356 lDRl~Iirt~~y~~~e~r~Ii~~Ra----------~~E~l~~~e~a~~~l~~ 397 (456)
T KOG1942|consen 356 LDRLLIIRTLPYDEEEIRQIIKIRA----------QVEGLQVEEEALDLLAE 397 (456)
T ss_pred hhheeEEeeccCCHHHHHHHHHHHH----------hhhcceecHHHHHHHHh
Confidence 9999999999999999999998873 24568899999998886
No 227
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=4.5e-09 Score=113.51 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE-E-ec-------CCcCchhhhccCcccc
Q 003349 319 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR-I-SL-------GGVKDEADIRGHRRTY 389 (828)
Q Consensus 319 ~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~-i-~~-------~~~~~~~~l~g~~~~~ 389 (828)
..+.+.+...+... .-++.+||+||+|+||+++|.++|+.+...... . .| ++.+.........+..
T Consensus 10 ~~~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~ 84 (319)
T PRK08769 10 QRAYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR 84 (319)
T ss_pred HHHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc
Confidence 34455555544322 234469999999999999999999887432100 0 00 0000000000000000
Q ss_pred ccc------CcchHHHHH---HhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcE
Q 003349 390 IGS------MPGRLIDGL---KRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458 (828)
Q Consensus 390 vg~------~~g~l~~~~---~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vi 458 (828)
.|. .-..+++.. ...+. ...|++||++|++.... .|+||+.|++. ..+++
T Consensus 85 ~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~A----aNaLLKtLEEP---------------p~~~~ 145 (319)
T PRK08769 85 TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAA----CNALLKTLEEP---------------SPGRY 145 (319)
T ss_pred ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHH----HHHHHHHhhCC---------------CCCCe
Confidence 110 011233322 22222 22399999999998776 89999999864 35678
Q ss_pred EEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHH
Q 003349 459 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMR 496 (828)
Q Consensus 459 iI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~ 496 (828)
||++|+.++.+.|.++|||..+.|++|+.++..+.+..
T Consensus 146 fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 146 LWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred EEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHH
Confidence 99999999999999999999999999999888877754
No 228
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.95 E-value=5.2e-09 Score=107.84 Aligned_cols=147 Identities=27% Similarity=0.407 Sum_probs=95.7
Q ss_pred hcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCCCCC-eEEEEcCCCCchhHHHHHHHHHhCCC-----eEEEecCC
Q 003349 302 LDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGP-VLCFVGPPGVGKTSLASSIASALGRK-----FIRISLGG 375 (828)
Q Consensus 302 ~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~-~lLL~GppGtGKT~la~~la~~l~~~-----~~~i~~~~ 375 (828)
.++..+++.|+..++||.-+++.|...+......+.+..| .+-|+|+|||||..+++.||+.+-.. ++..-...
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat 150 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVAT 150 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhh
Confidence 4577888999999999999999999999887776655544 66699999999999999999987332 21111111
Q ss_pred c--CchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCe-ee
Q 003349 376 V--KDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV-PF 452 (828)
Q Consensus 376 ~--~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~-~~ 452 (828)
. ...+.+. .|--+....++.... ...+++++|||+|++++.. ...|-..||. |-.+ .+
T Consensus 151 ~hFP~~~~ie----~Yk~eL~~~v~~~v~--~C~rslFIFDE~DKmp~gL----ld~lkpfLdy---------yp~v~gv 211 (344)
T KOG2170|consen 151 LHFPHASKIE----DYKEELKNRVRGTVQ--ACQRSLFIFDEVDKLPPGL----LDVLKPFLDY---------YPQVSGV 211 (344)
T ss_pred ccCCChHHHH----HHHHHHHHHHHHHHH--hcCCceEEechhhhcCHhH----HHHHhhhhcc---------ccccccc
Confidence 1 0111110 111111112233333 2346799999999998766 5666555552 2222 25
Q ss_pred cCCCcEEEEecCCCC
Q 003349 453 DLSKVIFVATANRAQ 467 (828)
Q Consensus 453 ~~~~viiI~TtN~~~ 467 (828)
++.+.+||.-+|...
T Consensus 212 ~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 212 DFRKAIFIFLSNAGG 226 (344)
T ss_pred cccceEEEEEcCCcc
Confidence 778899999999873
No 229
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=7.5e-09 Score=112.75 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=62.5
Q ss_pred cEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHH
Q 003349 409 PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPE 488 (828)
Q Consensus 409 ~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~e 488 (828)
.|++||++|++.... .|+||+.|++. ..+++||++|+.++.+.|.++|||..+.|++++.+
T Consensus 134 kV~iI~~ae~m~~~A----aNaLLKtLEEP---------------p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~ 194 (342)
T PRK06964 134 RVVVLYPAEALNVAA----ANALLKTLEEP---------------PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPE 194 (342)
T ss_pred eEEEEechhhcCHHH----HHHHHHHhcCC---------------CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHH
Confidence 399999999998876 89999999964 45679999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 003349 489 EKLRIAMRH 497 (828)
Q Consensus 489 e~~~Il~~~ 497 (828)
+..+.+...
T Consensus 195 ~~~~~L~~~ 203 (342)
T PRK06964 195 AAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHc
Confidence 988887653
No 230
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=1.3e-08 Score=111.15 Aligned_cols=139 Identities=19% Similarity=0.165 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC--eEEEecCCcCchhhhc-c-Ccccc-c---c--c--CcchHH---HHHHh
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK--FIRISLGGVKDEADIR-G-HRRTY-I---G--S--MPGRLI---DGLKR 403 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~--~~~i~~~~~~~~~~l~-g-~~~~~-v---g--~--~~g~l~---~~~~~ 403 (828)
-++.+||+||+|+||+++|+++|+.+-.. ...-.|+.-.+...+. | |+.-+ + + . .-..++ +.+..
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 35579999999999999999999988321 1001122110000000 0 00000 0 0 0 011233 33333
Q ss_pred cCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEE
Q 003349 404 VGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIE 481 (828)
Q Consensus 404 ~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~ 481 (828)
.+. ...|++||++|++.... .|+||+.|++. ..+++||.+|+.++.+.|.++||+..+.
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~~A----aNaLLKtLEEP---------------p~~t~fiL~t~~~~~lLpTIrSRCq~~~ 163 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTDAA----ANALLKTLEEP---------------PENTWFFLACREPARLLATLRSRCRLHY 163 (334)
T ss_pred ccccCCceEEEEcchHhhCHHH----HHHHHHHhcCC---------------CCCeEEEEEECChhhChHHHHhcccccc
Confidence 332 23399999999999876 89999999964 4567999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHH
Q 003349 482 LPGYTPEEKLRIAMR 496 (828)
Q Consensus 482 ~~~~~~ee~~~Il~~ 496 (828)
|++++.++....+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 164 LAPPPEQYALTWLSR 178 (334)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999888776654
No 231
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.92 E-value=5.3e-09 Score=111.12 Aligned_cols=200 Identities=23% Similarity=0.354 Sum_probs=112.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC---eEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK---FIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~---~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
.+.++||+||+|||||++++..-..+... ...++++..+....+...-....-...+. .+........|+|||+
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~---~~gP~~~k~lv~fiDD 108 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGR---VYGPPGGKKLVLFIDD 108 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTE---EEEEESSSEEEEEEET
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCC---CCCCCCCcEEEEEecc
Confidence 35579999999999999998876655433 23566766544433321111111000000 0000111223999999
Q ss_pred ccccCCCCCCC--hHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC---CCCccccCceEEEEcCCCCHHHH
Q 003349 416 IDKTGSDVRGD--PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRMEVIELPGYTPEEK 490 (828)
Q Consensus 416 id~l~~~~~~~--~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~---~l~~aLl~R~~~i~~~~~~~ee~ 490 (828)
++...++..|. +...|.|+++. ++|.+..........++.+++++|+.. .+++.|++.|.++.++.|+.+.+
T Consensus 109 lN~p~~d~ygtq~~iElLRQ~i~~---~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl 185 (272)
T PF12775_consen 109 LNMPQPDKYGTQPPIELLRQLIDY---GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSDESL 185 (272)
T ss_dssp TT-S---TTS--HHHHHHHHHHHC---SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----TCCHH
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHh---cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCChHHH
Confidence 99988877553 35667778874 345553222344667899999999754 58899999999999999999999
Q ss_pred HHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHH-------Hhh-------hhhchHHHHHHHHHHHH
Q 003349 491 LRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ-------RYT-------REAGVRNLERNLAALAR 545 (828)
Q Consensus 491 ~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~-------~~~-------~~~g~R~l~~~i~~l~~ 545 (828)
..|....+.. .++..+....-..+.+..+...++ .+. --.+.|++-+.++.+++
T Consensus 186 ~~If~~il~~-~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGil~ 253 (272)
T PF12775_consen 186 NTIFSSILQS-HLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGILL 253 (272)
T ss_dssp HHHHHHHHHH-HTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHHHh
Confidence 9998877632 222222221111233434443332 221 13568888888888874
No 232
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.92 E-value=1.1e-09 Score=113.70 Aligned_cols=164 Identities=19% Similarity=0.167 Sum_probs=110.3
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE------EEecCCcCchhhhccCcc
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI------RISLGGVKDEADIRGHRR 387 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~------~i~~~~~~~~~~l~g~~~ 387 (828)
++++++++...+.++... ..-+++|||||||+|||+...+.|..+..+.. .++.+....
T Consensus 42 dv~~~~ei~st~~~~~~~------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg--------- 106 (360)
T KOG0990|consen 42 IVIKQEPIWSTENRYSGM------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG--------- 106 (360)
T ss_pred hHhcCCchhhHHHHhccC------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC---------
Confidence 467888888877776432 33358999999999999999999988754311 112221111
Q ss_pred cccccCcchHHHHHHhcC--------CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEE
Q 003349 388 TYIGSMPGRLIDGLKRVG--------VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 459 (828)
Q Consensus 388 ~~vg~~~g~l~~~~~~~~--------~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vii 459 (828)
++-..+++ ..|.... .....+++||.|.+..+. |++|.++++.. ..++.|
T Consensus 107 --id~vr~qi-~~fast~~~~~fst~~~fKlvILDEADaMT~~A----QnALRRviek~---------------t~n~rF 164 (360)
T KOG0990|consen 107 --IDPVRQQI-HLFASTQQPTTYSTHAAFKLVILDEADAMTRDA----QNALRRVIEKY---------------TANTRF 164 (360)
T ss_pred --CcchHHHH-HHHHhhccceeccccCceeEEEecchhHhhHHH----HHHHHHHHHHh---------------ccceEE
Confidence 11111111 1111111 123489999999998776 99999877632 235678
Q ss_pred EEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHH
Q 003349 460 VATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVI 524 (828)
Q Consensus 460 I~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~ 524 (828)
+.-+|++..+.|++++||.-+.|.+++..+....+.+++. .+....+++....++
T Consensus 165 ~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e----------~e~~~~~~~~~~a~~ 219 (360)
T KOG0990|consen 165 ATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRE----------SEQKETNPEGYSALG 219 (360)
T ss_pred EEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHh----------cchhhcCHHHHHHHH
Confidence 8899999999999999999999999998888777777642 234556666655544
No 233
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.90 E-value=4.8e-08 Score=117.21 Aligned_cols=179 Identities=23% Similarity=0.293 Sum_probs=138.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcc----cccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRR----TYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~----~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
.-.+|+-||+-+|||++...+|+..|..|++++-..-++..+..|... +-+...+|.+.+++++. --+++||
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G----yWIVLDE 963 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG----YWIVLDE 963 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC----cEEEeec
Confidence 345899999999999999999999999999999777677666666431 11233457788888873 3899999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC------CCCccccCceEEEEcCCCCHHH
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ------PIPPPLLDRMEVIELPGYTPEE 489 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~------~l~~aLl~R~~~i~~~~~~~ee 489 (828)
++-++.++ ..+|.++||... ..|............++.+.+|.|+|. .++.||++||-.++|...+.++
T Consensus 964 LNLApTDV----LEaLNRLLDDNR-elfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedE 1038 (4600)
T COG5271 964 LNLAPTDV----LEALNRLLDDNR-ELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDE 1038 (4600)
T ss_pred cccCcHHH----HHHHHHhhcccc-ceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHH
Confidence 99998777 899999999754 456666556666778899999999985 7899999999999999999999
Q ss_pred HHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHH
Q 003349 490 KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAA 542 (828)
Q Consensus 490 ~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~ 542 (828)
+..|++... .+.+.-...+++-|.+-+.-|...|..++
T Consensus 1039 le~ILh~rc---------------~iapSyakKiVeVyr~Ls~rRs~~rifeq 1076 (4600)
T COG5271 1039 LEEILHGRC---------------EIAPSYAKKIVEVYRGLSSRRSINRIFEQ 1076 (4600)
T ss_pred HHHHHhccC---------------ccCHHHHHHHHHHHHHhhhhhhHHHHHHh
Confidence 999998763 45566666666666554444444444443
No 234
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.90 E-value=2.4e-08 Score=104.65 Aligned_cols=207 Identities=17% Similarity=0.234 Sum_probs=135.2
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCc---hhhhccCccc
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHRRT 388 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~---~~~l~g~~~~ 388 (828)
+++.....+.+.+...... .-...+|+.|.+||||-.+|++.-... ..+|.-++|.+..+ ++++.|+..+
T Consensus 206 ~v~~S~~mk~~v~qA~k~A----mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg 281 (511)
T COG3283 206 IVAVSPKMKHVVEQAQKLA----MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPG 281 (511)
T ss_pred HhhccHHHHHHHHHHHHhh----ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCC
Confidence 4555555554444332111 223458999999999999999866554 46899999998744 5677776654
Q ss_pred ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC--
Q 003349 389 YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-- 466 (828)
Q Consensus 389 ~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-- 466 (828)
--|. ...|..+. .+-+|+|||..+++.. |..|+.+|.++..++. .....+ .-++.||+||..+
T Consensus 282 ~~gk-----~GffE~An--gGTVlLDeIgEmSp~l----QaKLLRFL~DGtFRRV---Gee~Ev-~vdVRVIcatq~nL~ 346 (511)
T COG3283 282 DEGK-----KGFFEQAN--GGTVLLDEIGEMSPRL----QAKLLRFLNDGTFRRV---GEDHEV-HVDVRVICATQVNLV 346 (511)
T ss_pred CCCc-----cchhhhcc--CCeEEeehhhhcCHHH----HHHHHHHhcCCceeec---CCcceE-EEEEEEEecccccHH
Confidence 2222 22344443 5699999999999987 8999999987543332 222222 3367899998776
Q ss_pred -----CCCCccccCceEEEEcCCCCHHHHH----HHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 467 -----QPIPPPLLDRMEVIELPGYTPEEKL----RIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 467 -----~~l~~aLl~R~~~i~~~~~~~ee~~----~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
..+.+.|..|+.++.+..|...++. -+.+. +..+...+.+.. ..+++++.+.++.. |.|..++|+|+
T Consensus 347 ~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~-Fv~q~s~elg~p--~pkl~~~~~~~L~~-y~WpGNVRqL~ 422 (511)
T COG3283 347 ELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAEL-FVQQFSDELGVP--RPKLAADLLTVLTR-YAWPGNVRQLK 422 (511)
T ss_pred HHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHH-HHHHHHHHhCCC--CCccCHHHHHHHHH-cCCCccHHHHH
Confidence 3788888899986555444443332 23333 333444444433 57889999888665 88888999988
Q ss_pred HHHHHHH
Q 003349 538 RNLAALA 544 (828)
Q Consensus 538 ~~i~~l~ 544 (828)
+.|-+.|
T Consensus 423 N~iyRA~ 429 (511)
T COG3283 423 NAIYRAL 429 (511)
T ss_pred HHHHHHH
Confidence 7776655
No 235
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=1.5e-08 Score=109.27 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=92.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE-EEecCCcCchhhh-cc-Ccccc-c-----ccC--cchHHH---HHHhc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI-RISLGGVKDEADI-RG-HRRTY-I-----GSM--PGRLID---GLKRV 404 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~-~i~~~~~~~~~~l-~g-~~~~~-v-----g~~--~g~l~~---~~~~~ 404 (828)
-++.+||+||.|+||+++|+.+|+.+-..-. .-.|+.-.+...+ .| |+.-+ + |.. -..+++ .+...
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 3457999999999999999999998843211 0111110000000 00 11000 1 110 112333 22222
Q ss_pred CC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEc
Q 003349 405 GV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIEL 482 (828)
Q Consensus 405 ~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~ 482 (828)
+. ...|++||++|++.... .|+||+.|++. ..+++||++|+.++.+.|.++|||..+.|
T Consensus 104 ~~~~~~kV~iI~~ae~m~~~A----aNaLLKtLEEP---------------p~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 164 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMNESA----SNALLKTLEEP---------------APNCLFLLVTHNQKRLLPTIVSRCQQWVV 164 (319)
T ss_pred cccCCceEEEecchhhhCHHH----HHHHHHHhcCC---------------CCCeEEEEEECChhhChHHHHhcceeEeC
Confidence 22 23399999999998776 89999999964 45689999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 003349 483 PGYTPEEKLRIAMR 496 (828)
Q Consensus 483 ~~~~~ee~~~Il~~ 496 (828)
++|+.++..+.+..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (319)
T PRK06090 165 TPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999988877754
No 236
>PRK08181 transposase; Validated
Probab=98.84 E-value=6e-08 Score=102.50 Aligned_cols=124 Identities=22% Similarity=0.356 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
.+.+++|+||||||||+||.+++..+ |.....+++..... .+... ...+.+.+.+.... ...+|+|||
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~--~l~~a------~~~~~~~~~l~~l~-~~dLLIIDD 175 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ--KLQVA------RRELQLESAIAKLD-KFDLLILDD 175 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH--HHHHH------HhCCcHHHHHHHHh-cCCEEEEec
Confidence 45679999999999999999999866 33444444322211 11100 11122223333222 245999999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC----------CCCccccCce----EEEE
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----------PIPPPLLDRM----EVIE 481 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~----------~l~~aLl~R~----~~i~ 481 (828)
++....+. ..+..|+++++.++.. -.+|.|||.+. .+..+++||+ .+|.
T Consensus 176 lg~~~~~~--~~~~~Lf~lin~R~~~---------------~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~ 238 (269)
T PRK08181 176 LAYVTKDQ--AETSVLFELISARYER---------------RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFE 238 (269)
T ss_pred cccccCCH--HHHHHHHHHHHHHHhC---------------CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEe
Confidence 99876543 2257899999854321 14778888763 3446777887 2688
Q ss_pred cCCCCHH
Q 003349 482 LPGYTPE 488 (828)
Q Consensus 482 ~~~~~~e 488 (828)
|...|..
T Consensus 239 ~~g~s~R 245 (269)
T PRK08181 239 MNVESYR 245 (269)
T ss_pred cCCccch
Confidence 8876543
No 237
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.83 E-value=5.3e-08 Score=110.72 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=106.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHh-----cCCCCcEEEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKR-----VGVCNPVMLL 413 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~-----~~~~~~vl~i 413 (828)
+..++||+||||.||||||+.+|+..|...+.++.++..+...+. ..+..++.. +...+..+++
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~-----------~kI~~avq~~s~l~adsrP~CLVi 393 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVK-----------EKIENAVQNHSVLDADSRPVCLVI 393 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHH-----------HHHHHHHhhccccccCCCcceEEE
Confidence 445899999999999999999999999999999999876654332 123333322 2233448999
Q ss_pred ecccccCCCCCCChHHHHHHhcCccc--ccccccccCC----eeecCCCcEEEEecCCCCCCCccccC--ce-EEEEcCC
Q 003349 414 DEIDKTGSDVRGDPASALLEVLDPEQ--NKTFNDHYLN----VPFDLSKVIFVATANRAQPIPPPLLD--RM-EVIELPG 484 (828)
Q Consensus 414 DEid~l~~~~~~~~~~~Ll~~ld~~~--~~~~~~~~~~----~~~~~~~viiI~TtN~~~~l~~aLl~--R~-~~i~~~~ 484 (828)
||||...+.. .+.++.++.... ..+-.....+ .....-.--|||.||... -|+|+. -| .+|.|.+
T Consensus 394 DEIDGa~~~~----Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~ 467 (877)
T KOG1969|consen 394 DEIDGAPRAA----VDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVP 467 (877)
T ss_pred ecccCCcHHH----HHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecC
Confidence 9999887554 788888876221 1110000000 000001124678888655 477764 34 4799999
Q ss_pred CCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 485 YTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 485 ~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
|+..-+.+-++..+. ++++.++..++..|++.|..
T Consensus 468 p~~s~Lv~RL~~IC~----------rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 468 PSQSRLVERLNEICH----------RENMRADSKALNALCELTQN 502 (877)
T ss_pred CChhHHHHHHHHHHh----------hhcCCCCHHHHHHHHHHhcc
Confidence 988776654444321 34577889999999986654
No 238
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=5.9e-08 Score=113.42 Aligned_cols=198 Identities=16% Similarity=0.219 Sum_probs=104.7
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE-Ee---cCCcCchhhh-ccCcc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR-IS---LGGVKDEADI-RGHRR 387 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~-i~---~~~~~~~~~l-~g~~~ 387 (828)
++++|+++.++.+..++..... +..++..++|+||||||||++++.+|+.++..+.. .+ +....+.... .....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~ 162 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLES 162 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhh
Confidence 3578999988888877754322 23455679999999999999999999998765432 11 1110000000 00000
Q ss_pred cc--cccCcchHHHHHHhcC-----------CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecC
Q 003349 388 TY--IGSMPGRLIDGLKRVG-----------VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 388 ~~--vg~~~g~l~~~~~~~~-----------~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.+ .......+...+..+. ....||||||++.+.... ...+..+|... +... + .
T Consensus 163 ~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----~~~lq~lLr~~----~~e~--~----~ 228 (637)
T TIGR00602 163 CFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----TRALHEILRWK----YVSI--G----R 228 (637)
T ss_pred ccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----HHHHHHHHHHH----hhcC--C----C
Confidence 00 0001111222222211 123499999999876432 22333333200 0000 0 0
Q ss_pred CCcEEEEecCCC------C-C------CCccccC--ceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCccccc-CHH
Q 003349 455 SKVIFVATANRA------Q-P------IPPPLLD--RMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI-PEA 518 (828)
Q Consensus 455 ~~viiI~TtN~~------~-~------l~~aLl~--R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i-~~~ 518 (828)
-.+++|.|-|.. + . +.+++++ |+.+|.|++++...+.+.++..+..+... .. ....+ +++
T Consensus 229 ~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~---~~-~~~~~p~~~ 304 (637)
T TIGR00602 229 CPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKK---NG-EKIKVPKKT 304 (637)
T ss_pred ceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhc---cc-cccccCCHH
Confidence 112333332322 1 1 4478887 66789999999999888888776432111 11 11223 578
Q ss_pred HHHHHHHHhhh
Q 003349 519 MVKLVIQRYTR 529 (828)
Q Consensus 519 ~l~~l~~~~~~ 529 (828)
++..|+....|
T Consensus 305 ~l~~I~~~s~G 315 (637)
T TIGR00602 305 SVELLCQGCSG 315 (637)
T ss_pred HHHHHHHhCCC
Confidence 88888874433
No 239
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.78 E-value=6.4e-08 Score=111.17 Aligned_cols=191 Identities=18% Similarity=0.302 Sum_probs=120.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCch---hhhccCcccc-cccCcchHHHHHHhcCCCCcEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDE---ADIRGHRRTY-IGSMPGRLIDGLKRVGVCNPVM 411 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~---~~l~g~~~~~-vg~~~g~l~~~~~~~~~~~~vl 411 (828)
....++++|++||||+++|+++.... +.+|+.++|+..... +.+.|+.... .|... .....+..+ .++++
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~-~~~g~~~~a--~~gtl 237 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA--DGGTL 237 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCc-CCCCceeEC--CCCEE
Confidence 44578899999999999999998765 368999999876432 2333332211 11110 001112222 36699
Q ss_pred EEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-------CCCCccccCceEE--EEc
Q 003349 412 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------QPIPPPLLDRMEV--IEL 482 (828)
Q Consensus 412 ~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-------~~l~~aLl~R~~~--i~~ 482 (828)
|||||+.+.+.. +..|++.++........+ .... ..++.+|+||+.. ..+.+.|..|+.. |.+
T Consensus 238 ~ldei~~l~~~~----q~~l~~~l~~~~~~~~~~---~~~~-~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ 309 (441)
T PRK10365 238 FLDEIGDISPMM----QVRLLRAIQEREVQRVGS---NQTI-SVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEV 309 (441)
T ss_pred EEeccccCCHHH----HHHHHHHHccCcEEeCCC---Ccee-eeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecC
Confidence 999999999887 899999998643221111 1111 2246788777765 2577777788864 566
Q ss_pred CCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 483 PGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 483 ~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
|++.. ++...++..++.. ....++ +....++++++..|.. |.+..++|.|++.++..+
T Consensus 310 ppLreR~~Di~~l~~~~l~~-~~~~~~--~~~~~~~~~a~~~L~~-~~wpgN~reL~~~~~~~~ 369 (441)
T PRK10365 310 PSLRQRREDIPLLAGHFLQR-FAERNR--KAVKGFTPQAMDLLIH-YDWPGNIRELENAVERAV 369 (441)
T ss_pred CChhhcchhHHHHHHHHHHH-HHHHhC--CCCCCcCHHHHHHHHh-CCCCCHHHHHHHHHHHHH
Confidence 66554 3445555555432 222222 2234689999987665 777788999988887765
No 240
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.77 E-value=2.1e-08 Score=94.71 Aligned_cols=133 Identities=29% Similarity=0.293 Sum_probs=70.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCC---eEEEecCCcCchhhhc-----cCcccccccCcchHHHHHHhcCCCC-cE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRK---FIRISLGGVKDEADIR-----GHRRTYIGSMPGRLIDGLKRVGVCN-PV 410 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~---~~~i~~~~~~~~~~l~-----g~~~~~vg~~~g~l~~~~~~~~~~~-~v 410 (828)
+.+++|+||||||||++++.+|..+... +..++++......... .................+..+.... .+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999999775 5666655432211110 0000011111122333344443333 69
Q ss_pred EEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC-CCCCCccccCceE-EEEcC
Q 003349 411 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR-AQPIPPPLLDRME-VIELP 483 (828)
Q Consensus 411 l~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~-~~~l~~aLl~R~~-~i~~~ 483 (828)
+++||++.+.... ............ .. .......+..+|+++|. ....+..+..|++ .+.+.
T Consensus 82 iiiDei~~~~~~~----~~~~~~~~~~~~-~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 82 LILDEITSLLDAE----QEALLLLLEELR-LL------LLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLL 145 (148)
T ss_pred EEEECCcccCCHH----HHHHHHhhhhhH-HH------HHHHhcCCCEEEEEeCCCccCchhhhhhccceEEEec
Confidence 9999999988654 222221100000 00 00011345688899886 3344555555665 34443
No 241
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.75 E-value=2.4e-08 Score=113.18 Aligned_cols=184 Identities=20% Similarity=0.315 Sum_probs=128.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh--CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCC------CCcEE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL--GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGV------CNPVM 411 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l--~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~------~~~vl 411 (828)
...+|+.|.|||||-.+++++-... ..+|+-++|..+.+ .+.+. -++|+.+|..+.++.+... ..+.+
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~--~lies--ELFGy~~GafTga~~kG~~g~~~~A~gGtl 411 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPE--ALIES--ELFGYVAGAFTGARRKGYKGKLEQADGGTL 411 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchH--HhhhH--HHhccCccccccchhccccccceecCCCcc
Confidence 3468999999999999999998765 45889999988643 22221 3566666666655544332 23489
Q ss_pred EEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-------CCCCccccCceE--EEEc
Q 003349 412 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------QPIPPPLLDRME--VIEL 482 (828)
Q Consensus 412 ~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-------~~l~~aLl~R~~--~i~~ 482 (828)
|+|||..+.-.. |+.||++|.++...-.... ..++ ++.||++|++. ..|.+.|..|+. .|++
T Consensus 412 FldeIgd~p~~~----Qs~LLrVl~e~~v~p~g~~--~~~v---dirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~l 482 (606)
T COG3284 412 FLDEIGDMPLAL----QSRLLRVLQEGVVTPLGGT--RIKV---DIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITL 482 (606)
T ss_pred HHHHhhhchHHH----HHHHHHHHhhCceeccCCc--ceeE---EEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeecc
Confidence 999999998776 9999999987643322211 1445 45799998876 488999999997 4677
Q ss_pred CCCCH-HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 483 PGYTP-EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 483 ~~~~~-ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
|++.. .++...+.+++ .+++ .+.++++++++..|.. |.+..++|.|...|+.++
T Consensus 483 P~lr~R~d~~~~l~~~~-----~~~~--~~~~~l~~~~~~~l~~-~~WPGNirel~~v~~~~~ 537 (606)
T COG3284 483 PPLRERSDRIPLLDRIL-----KREN--DWRLQLDDDALARLLA-YRWPGNIRELDNVIERLA 537 (606)
T ss_pred CchhcccccHHHHHHHH-----HHcc--CCCccCCHHHHHHHHh-CCCCCcHHHHHHHHHHHH
Confidence 76655 23333444433 2222 2568999999988776 777888999998888876
No 242
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=3.2e-08 Score=107.78 Aligned_cols=139 Identities=24% Similarity=0.274 Sum_probs=88.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE---EEecCCc-----------CchhhhccCcc-ccccc-----CcchHH
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI---RISLGGV-----------KDEADIRGHRR-TYIGS-----MPGRLI 398 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~---~i~~~~~-----------~~~~~l~g~~~-~~vg~-----~~g~l~ 398 (828)
-++.+||+||+|+|||++|+.+|+.+...-. ...|+.- .+...+..... ..-|. .-..++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 3456999999999999999999998742110 0011110 00000000000 00010 012233
Q ss_pred HH---HHhcCC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccc
Q 003349 399 DG---LKRVGV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPL 473 (828)
Q Consensus 399 ~~---~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aL 473 (828)
+. +...+. ...|+++|+++.+.+.. ++.|++.|++.. .++.||++|+.++.+.+.+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a----~naLLk~LEep~---------------~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQA----ANSLLKVLEEPP---------------PQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHH----HHHHHHHHHhCc---------------CCCEEEEEeCChHhChHHH
Confidence 32 222222 23399999999998876 899999998531 2456888888888999999
Q ss_pred cCceEEEEcCCCCHHHHHHHHHH
Q 003349 474 LDRMEVIELPGYTPEEKLRIAMR 496 (828)
Q Consensus 474 l~R~~~i~~~~~~~ee~~~Il~~ 496 (828)
.+||..+.|++++.++..+.+..
T Consensus 161 ~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 161 KSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHhhhhcCCCCCHHHHHHHHHh
Confidence 99999999999999988877754
No 243
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.73 E-value=6.1e-08 Score=105.60 Aligned_cols=172 Identities=22% Similarity=0.317 Sum_probs=106.7
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhhCCC------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcC
Q 003349 304 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVK 377 (828)
Q Consensus 304 l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~ 377 (828)
...+.+.+..+|+|++++|+.++-.+...--+.. ...-++||.|.||+.||.|.+.+.+...+..+.-- -|
T Consensus 333 yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTG-rG-- 409 (721)
T KOG0482|consen 333 YEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTG-RG-- 409 (721)
T ss_pred HHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecC-CC--
Confidence 4556777888999999999999877654322111 11238999999999999999999998765544221 00
Q ss_pred chhhhccCcccccccCcch----HHH-------HHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccc
Q 003349 378 DEADIRGHRRTYIGSMPGR----LID-------GLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDH 446 (828)
Q Consensus 378 ~~~~l~g~~~~~vg~~~g~----l~~-------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~ 446 (828)
+ .-+|-+..- ++. ++--+ .++|..|||+||+.... -.++.++|+... -.....
T Consensus 410 S---------SGVGLTAAVmkDpvTgEM~LEGGALVLA--D~GICCIDEfDKM~e~D----RtAIHEVMEQQT-ISIaKA 473 (721)
T KOG0482|consen 410 S---------SGVGLTAAVMKDPVTGEMVLEGGALVLA--DGGICCIDEFDKMDESD----RTAIHEVMEQQT-ISIAKA 473 (721)
T ss_pred C---------CccccchhhhcCCCCCeeEeccceEEEc--cCceEeehhhhhhhhhh----hHHHHHHHHhhh-hhhhhh
Confidence 0 111111100 000 11111 25589999999998654 478899998532 222222
Q ss_pred cCCeeecCCCcEEEEecCCCC-------------CCCccccCceEE--EEcCCCCHHHHHHHHH
Q 003349 447 YLNVPFDLSKVIFVATANRAQ-------------PIPPPLLDRMEV--IELPGYTPEEKLRIAM 495 (828)
Q Consensus 447 ~~~~~~~~~~viiI~TtN~~~-------------~l~~aLl~R~~~--i~~~~~~~ee~~~Il~ 495 (828)
....+. ...+.|++++|+.. .||+||++|||+ +..+.|+.+.-..+++
T Consensus 474 GI~TtL-NAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~ 536 (721)
T KOG0482|consen 474 GINTTL-NARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQ 536 (721)
T ss_pred ccccch-hhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHH
Confidence 222222 34578899999874 799999999994 4445565544444433
No 244
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.73 E-value=5.5e-09 Score=114.46 Aligned_cols=177 Identities=25% Similarity=0.311 Sum_probs=93.0
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHHhhhCCC------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCch
Q 003349 306 AAKERLDSDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDE 379 (828)
Q Consensus 306 ~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~ 379 (828)
.+...+...++|.+.+|..+.-.+........ ...-++||+|.||||||.|.+.+++...+. +..+..+.+.
T Consensus 17 ~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~- 94 (331)
T PF00493_consen 17 RLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSA- 94 (331)
T ss_dssp CCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTC-
T ss_pred HHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCccc-
Confidence 34456678899999999888654433222111 123489999999999999999887765433 3344333211
Q ss_pred hhhccCccc--cccc---CcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecC
Q 003349 380 ADIRGHRRT--YIGS---MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 380 ~~l~g~~~~--~vg~---~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
..+.....+ .-|. ..| ++-.+ .++|++|||+|++..+. .+.|++.|+..... .......... .
T Consensus 95 ~gLta~~~~d~~~~~~~leaG----alvla--d~GiccIDe~dk~~~~~----~~~l~eaMEqq~is-i~kagi~~~l-~ 162 (331)
T PF00493_consen 95 AGLTASVSRDPVTGEWVLEAG----ALVLA--DGGICCIDEFDKMKEDD----RDALHEAMEQQTIS-IAKAGIVTTL-N 162 (331)
T ss_dssp CCCCEEECCCGGTSSECEEE-----HHHHC--TTSEEEECTTTT--CHH----HHHHHHHHHCSCEE-ECTSSSEEEE-E
T ss_pred CCccceeccccccceeEEeCC----chhcc--cCceeeecccccccchH----HHHHHHHHHcCeec-cchhhhcccc-c
Confidence 111111000 0010 112 22333 35799999999998765 89999999864322 2221111222 3
Q ss_pred CCcEEEEecCCCC-------------CCCccccCceEE-EEc-CCCCHHHHHHHHHH
Q 003349 455 SKVIFVATANRAQ-------------PIPPPLLDRMEV-IEL-PGYTPEEKLRIAMR 496 (828)
Q Consensus 455 ~~viiI~TtN~~~-------------~l~~aLl~R~~~-i~~-~~~~~ee~~~Il~~ 496 (828)
.++.|++++|+.. .++++|++|||. +.+ +.++.+.-..+.+.
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~ 219 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEH 219 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHH
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceE
Confidence 4689999999875 689999999994 343 55555444444443
No 245
>PRK08116 hypothetical protein; Validated
Probab=98.71 E-value=3.5e-08 Score=104.83 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=75.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecc
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 416 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEi 416 (828)
+.+++|+|+||||||+||.++++.+ +.++..++++.+.. .+.. .|.+.......+.+.... ..++|+|||+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~--~i~~---~~~~~~~~~~~~~~~~l~-~~dlLviDDl 187 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN--RIKS---TYKSSGKEDENEIIRSLV-NADLLILDDL 187 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--HHHH---HHhccccccHHHHHHHhc-CCCEEEEecc
Confidence 3469999999999999999999987 45555555443211 1111 111111111112222221 2469999999
Q ss_pred cccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-----CCCccccCce----EEEEcCCCCH
Q 003349 417 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRM----EVIELPGYTP 487 (828)
Q Consensus 417 d~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-----~l~~aLl~R~----~~i~~~~~~~ 487 (828)
..-... ...+..|+++++.+.. .+..+|.|||... .++..+.+|+ ..|.|..++.
T Consensus 188 g~e~~t--~~~~~~l~~iin~r~~--------------~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 188 GAERDT--EWAREKVYNIIDSRYR--------------KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred cCCCCC--HHHHHHHHHHHHHHHH--------------CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 653221 2236788899885432 1234778888763 3677888995 3577777664
No 246
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.70 E-value=5.4e-07 Score=96.22 Aligned_cols=185 Identities=16% Similarity=0.160 Sum_probs=102.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCC-CeEEEec-CCcCchhhhc-------cCcccccccCcc----hHHHHHHh--c
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGR-KFIRISL-GGVKDEADIR-------GHRRTYIGSMPG----RLIDGLKR--V 404 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~-~~~~i~~-~~~~~~~~l~-------g~~~~~vg~~~g----~l~~~~~~--~ 404 (828)
++.++|+||||+||||+++.+++.+.. ......+ ....+..++. |.. ..+.... .+...+.. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~--~~~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLE--TEGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHHHHHHh
Confidence 446889999999999999999998863 2222111 1111111111 111 1111111 12222211 1
Q ss_pred CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC--CCC----CccccCceE
Q 003349 405 GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA--QPI----PPPLLDRME 478 (828)
Q Consensus 405 ~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~--~~l----~~aLl~R~~ 478 (828)
.....+++|||++.+.+.. ...|..+.+-.. + ....+.|+++..+. +.+ ...+.+|+.
T Consensus 121 ~~~~~vliiDe~~~l~~~~----~~~l~~l~~~~~-----~-------~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~ 184 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPEL----LEELRMLSNFQT-----D-------NAKLLQIFLVGQPEFRETLQSPQLQQLRQRII 184 (269)
T ss_pred CCCCeEEEEECcccCCHHH----HHHHHHHhCccc-----C-------CCCeEEEEEcCCHHHHHHHcCchhHHHHhhee
Confidence 2234599999999986543 444443333110 0 01223445554432 111 234667875
Q ss_pred -EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 479 -VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 479 -~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.+++++++.++..+++...+. ..+. .....+++++++.|.+.+.+.. +.|+.+|..+...+..+
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~-----~~g~-~~~~~~~~~~~~~i~~~s~G~p------~~i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLE-----RAGN-RDAPVFSEGAFDAIHRFSRGIP------RLINILCDRLLLSAFLE 249 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHH-----HcCC-CCCCCcCHHHHHHHHHHcCCcc------cHHHHHHHHHHHHHHHc
Confidence 699999999999988887753 1221 2234689999999988655443 45777777666555444
No 247
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=3.3e-07 Score=97.11 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec----CCcC-chhhhccCcc-cccccC-cchHHHHHHhcCC--CCc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL----GGVK-DEADIRGHRR-TYIGSM-PGRLIDGLKRVGV--CNP 409 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~----~~~~-~~~~l~g~~~-~~vg~~-~g~l~~~~~~~~~--~~~ 409 (828)
-++.+||+||+|+||+++|.++|+.+-..-..-.| .+.+ |...+..... ..++-. -..+.+.+...+. ...
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 34579999999999999999999987432100011 1100 0000000000 001100 0122333333332 223
Q ss_pred EEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCC
Q 003349 410 VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGY 485 (828)
Q Consensus 410 vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~ 485 (828)
|++||++|++.... +|+||..|++. ..+++||.+|+.++.+.|.++|||..+.|+++
T Consensus 98 v~ii~~ad~mt~~A----aNaLLK~LEEP---------------p~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRMTLDA----ISAFLKVLEDP---------------PQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred EEEEechhhcCHHH----HHHHHHHhhcC---------------CCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 99999999999877 99999999964 45789999999999999999999999999875
No 248
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.67 E-value=1.6e-07 Score=109.45 Aligned_cols=178 Identities=16% Similarity=0.192 Sum_probs=112.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCC--CeEEEecCCcCchhhhccCcccccccCcchHHHHHHhc----------CCCC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGR--KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV----------GVCN 408 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~--~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~----------~~~~ 408 (828)
.++++.|++|+|||+++++++..+.. +|..+..+. +...+.|. +.+...++.. ..++
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~--t~~~L~Gg---------~Dl~~~l~~g~~~~~pGlla~Ah~ 94 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGI--ADDRLLGG---------LDLAATLRAGRPVAQRGLLAEADG 94 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCC--cHHHccCC---------chHHhHhhcCCcCCCCCceeeccC
Confidence 46999999999999999999999865 665554332 22222221 1222222111 1235
Q ss_pred cEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec-CCCcEEEEecCCC---CCCCccccCceE-EEEcC
Q 003349 409 PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD-LSKVIFVATANRA---QPIPPPLLDRME-VIELP 483 (828)
Q Consensus 409 ~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~-~~~viiI~TtN~~---~~l~~aLl~R~~-~i~~~ 483 (828)
+|||+||++.+.+.. ++.|++.|+.++...-.+ +..+. ..++++|+|.|.. +.++++++|||+ .+.++
T Consensus 95 GvL~lDe~n~~~~~~----~~aLleame~G~vtIeR~---G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~ 167 (584)
T PRK13406 95 GVLVLAMAERLEPGT----AARLAAALDTGEVRLERD---GLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLD 167 (584)
T ss_pred CEEEecCcccCCHHH----HHHHHHHHhCCcEEEEEC---CcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcC
Confidence 699999999999887 999999999875543222 22332 3568888986644 479999999998 59999
Q ss_pred CCCHHHHHHH--HHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh-h-hchHHHHHHHH
Q 003349 484 GYTPEEKLRI--AMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR-E-AGVRNLERNLA 541 (828)
Q Consensus 484 ~~~~ee~~~I--l~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~-~-~g~R~l~~~i~ 541 (828)
.++..+...- ....+.. .... + .++.++++.+.+++..+.. . .|.|.....+.
T Consensus 168 ~~~~~~~~~~~~~~~~I~~-AR~r--l--~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llr 224 (584)
T PRK13406 168 GLALRDAREIPIDADDIAA-ARAR--L--PAVGPPPEAIAALCAAAAALGIASLRAPLLALR 224 (584)
T ss_pred CCChHHhcccCCCHHHHHH-HHHH--H--ccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 8887654320 0001110 0111 1 1478999999998875443 1 14465544443
No 249
>PRK06526 transposase; Provisional
Probab=98.65 E-value=1.1e-07 Score=99.86 Aligned_cols=126 Identities=23% Similarity=0.421 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
.+.+++|+||||||||+||.+++..+- .....++++.... .+.. ....+.+...+.... ...+++|||
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~--~l~~------~~~~~~~~~~l~~l~-~~dlLIIDD 167 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA--RLAA------AHHAGRLQAELVKLG-RYPLLIVDE 167 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHH--HHHH------HHhcCcHHHHHHHhc-cCCEEEEcc
Confidence 456899999999999999999998763 2322222221111 1110 011123333333322 246999999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-----C-----CCccccCce----EEEE
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----P-----IPPPLLDRM----EVIE 481 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-----~-----l~~aLl~R~----~~i~ 481 (828)
++....+. ...+.|+++++..+.. ..+|+|||.+. . +-.+++||+ .+|.
T Consensus 168 ~g~~~~~~--~~~~~L~~li~~r~~~---------------~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~ 230 (254)
T PRK06526 168 VGYIPFEP--EAANLFFQLVSSRYER---------------ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVIS 230 (254)
T ss_pred cccCCCCH--HHHHHHHHHHHHHHhc---------------CCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEe
Confidence 99876433 1256788888754321 13778888873 2 233566776 3688
Q ss_pred cCCCCHHHH
Q 003349 482 LPGYTPEEK 490 (828)
Q Consensus 482 ~~~~~~ee~ 490 (828)
|...+...+
T Consensus 231 ~~g~s~R~~ 239 (254)
T PRK06526 231 LKGDSYRLK 239 (254)
T ss_pred ecCCCcchh
Confidence 887665433
No 250
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.63 E-value=7.1e-07 Score=89.46 Aligned_cols=173 Identities=18% Similarity=0.252 Sum_probs=114.8
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC---CeEEEecCCcCchhhhccCccccc
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR---KFIRISLGGVKDEADIRGHRRTYI 390 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~---~~~~i~~~~~~~~~~l~g~~~~~v 390 (828)
+++|.+.+++.+.+....-. ...+..++||+|.-|||||++++++-..+.. ..+.|+-..+.+.
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L----------- 127 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL----------- 127 (287)
T ss_pred HHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-----------
Confidence 46799999999876554321 1234558999999999999999999988843 4444443322211
Q ss_pred ccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCC
Q 003349 391 GSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIP 470 (828)
Q Consensus 391 g~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~ 470 (828)
..+.+.++..+ ..-|+|+|++-- +...+...+|-.+||+.- .-...||+|-+|+|+-..++
T Consensus 128 ----p~l~~~Lr~~~-~kFIlFcDDLSF---e~gd~~yK~LKs~LeG~v-----------e~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 128 ----PDLVELLRARP-EKFILFCDDLSF---EEGDDAYKALKSALEGGV-----------EGRPANVLFYATSNRRHLLP 188 (287)
T ss_pred ----HHHHHHHhcCC-ceEEEEecCCCC---CCCchHHHHHHHHhcCCc-----------ccCCCeEEEEEecCCccccc
Confidence 23445555433 233889888643 333344778888888532 22367899999999975333
Q ss_pred c----------------------cccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHh
Q 003349 471 P----------------------PLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 527 (828)
Q Consensus 471 ~----------------------aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~ 527 (828)
. .|-+||- .+.|++++.++-.+|+..+. +.. ++.++++.++.-+..+
T Consensus 189 e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a-----~~~-----~l~~~~e~l~~eAl~W 258 (287)
T COG2607 189 EDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYA-----KHF-----GLDISDEELHAEALQW 258 (287)
T ss_pred HhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHH
Confidence 1 2446996 79999999999999998885 223 3556666666655544
Q ss_pred h
Q 003349 528 T 528 (828)
Q Consensus 528 ~ 528 (828)
.
T Consensus 259 A 259 (287)
T COG2607 259 A 259 (287)
T ss_pred H
Confidence 3
No 251
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.62 E-value=8e-07 Score=91.33 Aligned_cols=113 Identities=25% Similarity=0.338 Sum_probs=81.6
Q ss_pred CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC------------CCCCcccc
Q 003349 407 CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------------QPIPPPLL 474 (828)
Q Consensus 407 ~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~------------~~l~~aLl 474 (828)
.++|+||||++.+.-+. ++.|...++. |+.. +++++||+. ..+|-.|+
T Consensus 288 vpGVLFIDEvHMLDIEc----FsFlNrAlE~---------------d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~l 347 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIEC----FSFLNRALEN---------------DMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLL 347 (454)
T ss_pred ccceEEEeeehhhhhHH----HHHHHHHhhh---------------ccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHh
Confidence 34589999999887666 6666666653 2333 455666764 48899999
Q ss_pred CceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 475 DRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 475 ~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+|+-+|...+|+.++..+|++..+ ..+.+.+++++++.|..- ....++| .-.+++..+.+.++++
T Consensus 348 DR~lII~t~py~~~d~~~IL~iRc----------~EEdv~m~~~A~d~Lt~i-~~~tsLR----Yai~Lit~a~~~~~kr 412 (454)
T KOG2680|consen 348 DRMLIISTQPYTEEDIKKILRIRC----------QEEDVEMNPDALDLLTKI-GEATSLR----YAIHLITAASLVCLKR 412 (454)
T ss_pred hhhheeecccCcHHHHHHHHHhhh----------hhhccccCHHHHHHHHHh-hhhhhHH----HHHHHHHHHHHHHHHh
Confidence 999999999999999999999874 245688999999988762 2223333 3345566677777777
No 252
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.60 E-value=3.3e-08 Score=98.39 Aligned_cols=113 Identities=28% Similarity=0.449 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
.+.+++|+||||||||+||.++++.+ +.+...++++.... .+.. .+.......+.+.+.. .++++|||
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~--~l~~---~~~~~~~~~~~~~l~~----~dlLilDD 116 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD--ELKQ---SRSDGSYEELLKRLKR----VDLLILDD 116 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH--HHHC---CHCCTTHCHHHHHHHT----SSCEEEET
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec--cccc---cccccchhhhcCcccc----ccEecccc
Confidence 56789999999999999999999876 55555666554322 1211 1111112233444443 45999999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC----------CCCccccCce
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----------PIPPPLLDRM 477 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~----------~l~~aLl~R~ 477 (828)
+.....+. ...+.|+++++.+..+ . ..|.|||... .+..+++||+
T Consensus 117 lG~~~~~~--~~~~~l~~ii~~R~~~--------------~-~tIiTSN~~~~~l~~~~~d~~~a~aildRl 171 (178)
T PF01695_consen 117 LGYEPLSE--WEAELLFEIIDERYER--------------K-PTIITSNLSPSELEEVLGDRALAEAILDRL 171 (178)
T ss_dssp CTSS---H--HHHHCTHHHHHHHHHT----------------EEEEEESS-HHHHHT---------------
T ss_pred cceeeecc--cccccchhhhhHhhcc--------------c-CeEeeCCCchhhHhhccccccccccccccc
Confidence 98754332 2256678888765321 1 4667999762 4557777776
No 253
>PRK12377 putative replication protein; Provisional
Probab=98.59 E-value=5.8e-08 Score=101.37 Aligned_cols=122 Identities=21% Similarity=0.309 Sum_probs=72.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCchhhhccCccccc-ccCcchHHHHHHhcCCCCcEEEEec
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYI-GSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~~~~l~g~~~~~v-g~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
..+++|+||||||||+||.++|+.+. ..+..+++..... .+.. .+. +.....+.+.+. ..++|+|||
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~--~l~~---~~~~~~~~~~~l~~l~----~~dLLiIDD 171 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS--RLHE---SYDNGQSGEKFLQELC----KVDLLVLDE 171 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH--HHHH---HHhccchHHHHHHHhc----CCCEEEEcC
Confidence 35799999999999999999999883 4444444433211 1111 111 111112222222 356999999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-----CCCccccCceE-----EEEcCCC
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRME-----VIELPGY 485 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-----~l~~aLl~R~~-----~i~~~~~ 485 (828)
++....+. ..+..|+++++.++.. ..-+|.|||... .+...++||+. .|.|...
T Consensus 172 lg~~~~s~--~~~~~l~~ii~~R~~~--------------~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~ 235 (248)
T PRK12377 172 IGIQRETK--NEQVVLNQIIDRRTAS--------------MRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWE 235 (248)
T ss_pred CCCCCCCH--HHHHHHHHHHHHHHhc--------------CCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCc
Confidence 97654322 2377899999865432 124678899753 45566666661 2555554
Q ss_pred C
Q 003349 486 T 486 (828)
Q Consensus 486 ~ 486 (828)
|
T Consensus 236 s 236 (248)
T PRK12377 236 S 236 (248)
T ss_pred C
Confidence 3
No 254
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.7e-07 Score=99.70 Aligned_cols=153 Identities=17% Similarity=0.239 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE--EEecCCcCchhhhc--cCccc-cc-
Q 003349 317 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI--RISLGGVKDEADIR--GHRRT-YI- 390 (828)
Q Consensus 317 G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~--~i~~~~~~~~~~l~--g~~~~-~v- 390 (828)
.|..+++.+...+... .-++.+||+|| +||+++|+.+|+.+..... .-.|+.-.+...+. .|+.- ++
T Consensus 6 ~q~~~~~~L~~~~~~~-----rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~ 78 (290)
T PRK07276 6 KQPKVFQRFQTILEQD-----RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIE 78 (290)
T ss_pred HHHHHHHHHHHHHHcC-----CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeec
Confidence 4566677776666533 33567999996 6899999999988743210 00111110000000 11110 11
Q ss_pred --ccC--cchHHHH---HHhcCCC--CcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEE
Q 003349 391 --GSM--PGRLIDG---LKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA 461 (828)
Q Consensus 391 --g~~--~g~l~~~---~~~~~~~--~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~ 461 (828)
|.. -..+++. +...+.. ..|++||++|++.... .|+||..|++. ..+++||+
T Consensus 79 p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~A----aNaLLKtLEEP---------------p~~t~~iL 139 (290)
T PRK07276 79 PQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNA----ANSLLKVIEEP---------------QSEIYIFL 139 (290)
T ss_pred CCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHH----HHHHHHHhcCC---------------CCCeEEEE
Confidence 111 1233333 3332322 2399999999999776 89999999964 34678999
Q ss_pred ecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHH
Q 003349 462 TANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMR 496 (828)
Q Consensus 462 TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~ 496 (828)
+|+.++.+.|.++|||..|.|+. +.++..+++..
T Consensus 140 ~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 140 LTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred EECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 99999999999999999999977 66666666543
No 255
>PRK09183 transposase/IS protein; Provisional
Probab=98.54 E-value=6.1e-08 Score=102.54 Aligned_cols=125 Identities=23% Similarity=0.350 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLD 414 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iD 414 (828)
..+.+++|+||||||||+|+.+++..+ |.....+++..... .+... ...+.+...+........+++||
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~--~l~~a------~~~~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL--QLSTA------QRQGRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH--HHHHH------HHCCcHHHHHHHHhcCCCEEEEc
Confidence 356789999999999999999998765 33333333222110 11100 01122333343322234699999
Q ss_pred cccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-----CC------CccccCce----EE
Q 003349 415 EIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PI------PPPLLDRM----EV 479 (828)
Q Consensus 415 Eid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-----~l------~~aLl~R~----~~ 479 (828)
|++....+. +..+.|+++++.++.. . .+|.|||.+. .+ ..+++||+ .+
T Consensus 172 dlg~~~~~~--~~~~~lf~li~~r~~~--------------~-s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~ 234 (259)
T PRK09183 172 EIGYLPFSQ--EEANLFFQVIAKRYEK--------------G-SMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHV 234 (259)
T ss_pred ccccCCCCh--HHHHHHHHHHHHHHhc--------------C-cEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEE
Confidence 998865543 2256789998764321 1 3677888763 22 24677776 25
Q ss_pred EEcCCCCH
Q 003349 480 IELPGYTP 487 (828)
Q Consensus 480 i~~~~~~~ 487 (828)
|.|...+.
T Consensus 235 i~~~g~s~ 242 (259)
T PRK09183 235 VQIKGESY 242 (259)
T ss_pred EeecCCCC
Confidence 77776554
No 256
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.53 E-value=1.8e-06 Score=91.06 Aligned_cols=223 Identities=18% Similarity=0.192 Sum_probs=120.5
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---------CCeEEEecCCcC
Q 003349 307 AKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---------RKFIRISLGGVK 377 (828)
Q Consensus 307 ~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---------~~~~~i~~~~~~ 377 (828)
...+-.+..+|...+.+.+...-......+....+++|++|++|.|||++++.++.... .|++.+.+....
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 33444566777777666554333322232334567899999999999999999998763 245555554433
Q ss_pred chhhhc-------cCccc---ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCccccccccccc
Q 003349 378 DEADIR-------GHRRT---YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY 447 (828)
Q Consensus 378 ~~~~l~-------g~~~~---~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~ 447 (828)
+...+. |.+-. -...........++... ..+++|||++.+.... ...+..++..|.. ..+-
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~--vrmLIIDE~H~lLaGs-~~~qr~~Ln~LK~------L~Ne 178 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLG--VRMLIIDEFHNLLAGS-YRKQREFLNALKF------LGNE 178 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcC--CcEEEeechHHHhccc-HHHHHHHHHHHHH------Hhhc
Confidence 333221 11100 01111122334555543 3399999999975432 1124555555431 1111
Q ss_pred CCeeecCCCcEEEEecCCC--CCCCccccCceEEEEcCCCCHHH-HHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHH
Q 003349 448 LNVPFDLSKVIFVATANRA--QPIPPPLLDRMEVIELPGYTPEE-KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVI 524 (828)
Q Consensus 448 ~~~~~~~~~viiI~TtN~~--~~l~~aLl~R~~~i~~~~~~~ee-~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~ 524 (828)
... .++.++|.... -.-|+.+-+||+.+.+|.....+ -..++..+- ....+.+...--+++....|.
T Consensus 179 L~i-----piV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e-----~~LPLr~~S~l~~~~la~~i~ 248 (302)
T PF05621_consen 179 LQI-----PIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFE-----RALPLRKPSNLASPELARRIH 248 (302)
T ss_pred cCC-----CeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHH-----HhCCCCCCCCCCCHHHHHHHH
Confidence 111 12233332111 15678999999998888776633 333443331 111222222223455556666
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 525 QRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 525 ~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
....+.. ..+.+++..||..+++.
T Consensus 249 ~~s~G~i------G~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 249 ERSEGLI------GELSRLLNAAAIAAIRS 272 (302)
T ss_pred HHcCCch------HHHHHHHHHHHHHHHhc
Confidence 6555544 36777888888888877
No 257
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.49 E-value=6.9e-08 Score=92.17 Aligned_cols=125 Identities=26% Similarity=0.414 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC---CeEEEecCCcCchhhhccCcccccccC
Q 003349 317 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR---KFIRISLGGVKDEADIRGHRRTYIGSM 393 (828)
Q Consensus 317 G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~---~~~~i~~~~~~~~~~l~g~~~~~vg~~ 393 (828)
|.....+++.+.+.... .....++|+|+|||||+++|+.|....+. ++..++|...
T Consensus 2 G~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~----------------- 60 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASL----------------- 60 (138)
T ss_dssp -SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCT-----------------
T ss_pred CCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhC-----------------
Confidence 55556666666655433 23456899999999999999999987654 2222222211
Q ss_pred cchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC------
Q 003349 394 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ------ 467 (828)
Q Consensus 394 ~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~------ 467 (828)
+ .+.+..+ .++.++|+|+|.+.+.. +..|++.|+... ..++.+|+|+...-
T Consensus 61 ~---~~~l~~a--~~gtL~l~~i~~L~~~~----Q~~L~~~l~~~~--------------~~~~RlI~ss~~~l~~l~~~ 117 (138)
T PF14532_consen 61 P---AELLEQA--KGGTLYLKNIDRLSPEA----QRRLLDLLKRQE--------------RSNVRLIASSSQDLEELVEE 117 (138)
T ss_dssp C---HHHHHHC--TTSEEEEECGCCS-HHH----HHHHHHHHHHCT--------------TTTSEEEEEECC-CCCHHHH
T ss_pred c---HHHHHHc--CCCEEEECChHHCCHHH----HHHHHHHHHhcC--------------CCCeEEEEEeCCCHHHHhhc
Confidence 1 2344444 46799999999999876 888888887421 12456777766542
Q ss_pred -CCCccccCceE--EEEcCCC
Q 003349 468 -PIPPPLLDRME--VIELPGY 485 (828)
Q Consensus 468 -~l~~aLl~R~~--~i~~~~~ 485 (828)
.+++.|..||. .|.+|++
T Consensus 118 ~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 118 GRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp STHHHHHHHHCSTCEEEE---
T ss_pred cchhHHHHHHhCCCEEeCCCC
Confidence 67788888885 5777764
No 258
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.47 E-value=3.7e-06 Score=96.78 Aligned_cols=200 Identities=15% Similarity=0.218 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec-CCcCc----hhhhccCccc---cccc
Q 003349 321 VKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL-GGVKD----EADIRGHRRT---YIGS 392 (828)
Q Consensus 321 ~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~-~~~~~----~~~l~g~~~~---~vg~ 392 (828)
-++.+..++..... +......+||+|||||||||+++.+|+.++..+....- ..... ..+..+.... |.+.
T Consensus 27 Kv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq 105 (519)
T PF03215_consen 27 KVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQ 105 (519)
T ss_pred HHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccch
Confidence 34455555543322 23345689999999999999999999999877665421 11000 0011100000 1010
Q ss_pred CcchHHHH-HHhcC------------CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEE
Q 003349 393 MPGRLIDG-LKRVG------------VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 459 (828)
Q Consensus 393 ~~g~l~~~-~~~~~------------~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vii 459 (828)
. ..+.+. ++.+. ....||+++|+-...... ...|.+.|..--.. .. ...++|
T Consensus 106 ~-~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~~f~~~L~~~l~~---~~-------~~PlV~ 170 (519)
T PF03215_consen 106 S-DKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TSRFREALRQYLRS---SR-------CLPLVF 170 (519)
T ss_pred h-hhhccccccccccccccccCCCcCCCceEEEeeccccccchh----HHHHHHHHHHHHHc---CC-------CCCEEE
Confidence 0 011111 11111 123399999998655433 24555554321100 00 115677
Q ss_pred EEe--c-----CCC--------CCCCccccC--ceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHH
Q 003349 460 VAT--A-----NRA--------QPIPPPLLD--RMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKL 522 (828)
Q Consensus 460 I~T--t-----N~~--------~~l~~aLl~--R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~ 522 (828)
|+| . |.. .-+++.++. ++..|.|.+.+..-+.+.+++.+........+. ....-..++++.
T Consensus 171 iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~--~~~p~~~~~l~~ 248 (519)
T PF03215_consen 171 IISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGK--NKVPDKQSVLDS 248 (519)
T ss_pred EEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCC--ccCCChHHHHHH
Confidence 777 1 111 146677776 456899999999888887777654332111111 112222446777
Q ss_pred HHHHhhhhhchHHHHHHHHHH
Q 003349 523 VIQRYTREAGVRNLERNLAAL 543 (828)
Q Consensus 523 l~~~~~~~~g~R~l~~~i~~l 543 (828)
|+....| +++..|..+
T Consensus 249 I~~~s~G-----DIRsAIn~L 264 (519)
T PF03215_consen 249 IAESSNG-----DIRSAINNL 264 (519)
T ss_pred HHHhcCc-----hHHHHHHHH
Confidence 7765433 444555444
No 259
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.47 E-value=5.7e-07 Score=98.33 Aligned_cols=180 Identities=19% Similarity=0.194 Sum_probs=104.1
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHHhhh--CCC----CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc-Cc
Q 003349 306 AAKERLDSDHYGLVRVKQRIIEYLAVRKL--KPD----ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV-KD 378 (828)
Q Consensus 306 ~~~~~l~~~i~G~~~~~~~l~~~l~~~~~--~~~----~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~-~~ 378 (828)
.+.+.+...++|.+++|+.+.=.|-..-. .++ ...-++||.|.|||.||.|.+-+-+... ... .-+|. .+
T Consensus 324 ~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsP--IaV-YTSGKGSS 400 (729)
T KOG0481|consen 324 RISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSP--IAV-YTSGKGSS 400 (729)
T ss_pred HHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCc--eEE-EecCCCcc
Confidence 34556667899999999998655532211 111 1123899999999999999998877643 322 22222 11
Q ss_pred hhhhccC----cccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecC
Q 003349 379 EADIRGH----RRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 379 ~~~l~g~----~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
...+... +.+.-=+.+| .++-.+ .++|++|||+|++-.+. --++.+.|+.. +.......-.+.-.
T Consensus 401 AAGLTASV~RD~~tReFylEG---GAMVLA--DgGVvCIDEFDKMre~D----RVAIHEAMEQQ--TISIAKAGITT~LN 469 (729)
T KOG0481|consen 401 AAGLTASVIRDPSTREFYLEG---GAMVLA--DGGVVCIDEFDKMREDD----RVAIHEAMEQQ--TISIAKAGITTTLN 469 (729)
T ss_pred cccceeeEEecCCcceEEEec---ceEEEe--cCCEEEeehhhccCchh----hhHHHHHHHhh--hHHHhhhcceeeec
Confidence 1111100 0000000011 011111 35699999999998755 46677777642 21111111112335
Q ss_pred CCcEEEEecCCCC-------------CCCccccCceE-EEEcCCCCHHHHHHHHHHhhc
Q 003349 455 SKVIFVATANRAQ-------------PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLI 499 (828)
Q Consensus 455 ~~viiI~TtN~~~-------------~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~ 499 (828)
+.+.|++++|+.. .+-+.+++||| ++.+..-..+++-..+.+|..
T Consensus 470 SRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 470 SRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred chhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 6788999999874 57789999999 566666666666665555543
No 260
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.47 E-value=1.7e-07 Score=104.56 Aligned_cols=154 Identities=20% Similarity=0.266 Sum_probs=88.1
Q ss_pred hcccccchHHHHHHHHHHHHHhhhCCC-----CCC-CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhc-
Q 003349 311 LDSDHYGLVRVKQRIIEYLAVRKLKPD-----ARG-PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR- 383 (828)
Q Consensus 311 l~~~i~G~~~~~~~l~~~l~~~~~~~~-----~~~-~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~- 383 (828)
+-..|||+.++|..+.-.+....-+.. .+| .++||+|.||||||.+.+.+++...+.++.--. |... ..+.
T Consensus 447 iaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGq-GASa-vGLTa 524 (854)
T KOG0477|consen 447 IAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQ-GASA-VGLTA 524 (854)
T ss_pred hCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccC-Cccc-cceeE
Confidence 346799999999988665543222111 112 389999999999999999999987655442211 1000 0000
Q ss_pred ---cCc--ccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcE
Q 003349 384 ---GHR--RTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458 (828)
Q Consensus 384 ---g~~--~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vi 458 (828)
..+ +.|.-+ .| ++-.+ ..+|.+|||+|++.... -..+.+.|+.. ........-.+.-...|.
T Consensus 525 ~v~KdPvtrEWTLE-aG----ALVLA--DkGvClIDEFDKMndqD----RtSIHEAMEQQ--SISISKAGIVtsLqArct 591 (854)
T KOG0477|consen 525 YVRKDPVTREWTLE-AG----ALVLA--DKGVCLIDEFDKMNDQD----RTSIHEAMEQQ--SISISKAGIVTSLQARCT 591 (854)
T ss_pred EEeeCCccceeeec-cC----eEEEc--cCceEEeehhhhhcccc----cchHHHHHHhc--chhhhhhhHHHHHHhhhh
Confidence 000 000000 00 11111 24599999999998644 24556666532 111111111111234689
Q ss_pred EEEecCCCC-------------CCCccccCceEE
Q 003349 459 FVATANRAQ-------------PIPPPLLDRMEV 479 (828)
Q Consensus 459 iI~TtN~~~-------------~l~~aLl~R~~~ 479 (828)
+|+++|+.. .+..++++||++
T Consensus 592 vIAAanPigGRY~~s~tFaqNV~ltePIlSRFDi 625 (854)
T KOG0477|consen 592 VIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDI 625 (854)
T ss_pred hheecCCCCCccCCccchhhccccccchhhhcce
Confidence 999999952 788999999985
No 261
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=4.2e-06 Score=89.85 Aligned_cols=136 Identities=12% Similarity=0.174 Sum_probs=89.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccC--cchHHHHHHhcCC------CCcE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM--PGRLIDGLKRVGV------CNPV 410 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~--~g~l~~~~~~~~~------~~~v 410 (828)
-.+.+||+|+.|+||+++++.+++.+...... .+.....+..+.-. ...|.. ...+++.....+. ...|
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~-~~~~~~~p~n~~~~--d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQIT-NLNEQELPANIILF--DIFDKDLSKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCC-CCCCCCCCcceEEe--ccCCCcCCHHHHHHHHHHhccCCcccCCceE
Confidence 34678899999999999999999987221000 00000000000000 000111 1234444433321 2349
Q ss_pred EEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHH
Q 003349 411 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEK 490 (828)
Q Consensus 411 l~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~ 490 (828)
++||+++++.... +++|+..|++. ..+++||++|+.++.+-+.+++||.+++|.+++.++.
T Consensus 94 vII~~~e~m~~~a----~NaLLK~LEEP---------------p~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l 154 (299)
T PRK07132 94 LIIKNIEKTSNSL----LNALLKTIEEP---------------PKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKI 154 (299)
T ss_pred EEEecccccCHHH----HHHHHHHhhCC---------------CCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHH
Confidence 9999999997655 89999999863 4567888888888999999999999999999999988
Q ss_pred HHHHHH
Q 003349 491 LRIAMR 496 (828)
Q Consensus 491 ~~Il~~ 496 (828)
.+.+..
T Consensus 155 ~~~l~~ 160 (299)
T PRK07132 155 LAKLLS 160 (299)
T ss_pred HHHHHH
Confidence 876654
No 262
>PF13173 AAA_14: AAA domain
Probab=98.46 E-value=1e-06 Score=82.85 Aligned_cols=118 Identities=24% Similarity=0.327 Sum_probs=75.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhC--CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhc-CCCCcEEEEecc
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALG--RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV-GVCNPVMLLDEI 416 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~--~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~-~~~~~vl~iDEi 416 (828)
++.++++||.||||||+++.+++.+. .....+++......... ... +.+.+... .....++||||+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~i~iDEi 70 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA----------DPD-LLEYFLELIKPGKKYIFIDEI 70 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh----------hhh-hHHHHHHhhccCCcEEEEehh
Confidence 45789999999999999999998875 66777777664331100 000 22333322 113569999999
Q ss_pred cccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC----CCCccccCceEEEEcCCCCHHH
Q 003349 417 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----PIPPPLLDRMEVIELPGYTPEE 489 (828)
Q Consensus 417 d~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~----~l~~aLl~R~~~i~~~~~~~ee 489 (828)
..+.. . ...+-.+.|.. .++.|++|+.... .....|..|...+++.|++-.|
T Consensus 71 q~~~~-~----~~~lk~l~d~~----------------~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 71 QYLPD-W----EDALKFLVDNG----------------PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhcc-H----HHHHHHHHHhc----------------cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 99852 2 34444444421 2334555544332 4567788899999999998866
No 263
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=1.7e-06 Score=94.61 Aligned_cols=210 Identities=19% Similarity=0.302 Sum_probs=128.8
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---C--CeEEEecCCcCchhhhccCc--
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---R--KFIRISLGGVKDEADIRGHR-- 386 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~--~~~~i~~~~~~~~~~l~g~~-- 386 (828)
.+.|.+.-...+.+|+..+.-. ..+..+.+.|-||||||.+...+-..+. . ..+.++|..+.....++..-
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 3567777778888888765442 3455688999999999998876654442 2 23567777655554443211
Q ss_pred ---ccccccCcc-hHHHHHHhcCC--CCc-EEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEE
Q 003349 387 ---RTYIGSMPG-RLIDGLKRVGV--CNP-VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 459 (828)
Q Consensus 387 ---~~~vg~~~g-~l~~~~~~~~~--~~~-vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vii 459 (828)
...++...+ +..+.|...-. ..+ ++++||+|.+.... +..|+.+++... ...+.++.
T Consensus 229 ~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~----~~vLy~lFewp~------------lp~sr~iL 292 (529)
T KOG2227|consen 229 SLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS----QTVLYTLFEWPK------------LPNSRIIL 292 (529)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc----cceeeeehhccc------------CCcceeee
Confidence 011111111 23334433221 122 88999999998554 566777765321 12467889
Q ss_pred EEecCCCC---CCCccccCce----EEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhc
Q 003349 460 VATANRAQ---PIPPPLLDRM----EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 532 (828)
Q Consensus 460 I~TtN~~~---~l~~aLl~R~----~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g 532 (828)
|+-+|..+ .+-|.|..|. ..+.|++|+.++..+|++..+.. .....+-+.+++..+....+.+|
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~---------~~t~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE---------ESTSIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc---------ccccccchHHHHHHHHHhccCch
Confidence 99999876 3334444444 36999999999999999998742 11234445688888887777666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 003349 533 VRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 533 ~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+|++++ .+||. ++.+++.
T Consensus 364 --DlRkaL-dv~R~-aiEI~E~ 381 (529)
T KOG2227|consen 364 --DLRKAL-DVCRR-AIEIAEI 381 (529)
T ss_pred --hHHHHH-HHHHH-HHHHHHH
Confidence 444433 45553 3444444
No 264
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=4.9e-07 Score=93.78 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhc--cCccccc-cc-----Ccch---HHHHHHhcC-C
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR--GHRRTYI-GS-----MPGR---LIDGLKRVG-V 406 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~--g~~~~~v-g~-----~~g~---l~~~~~~~~-~ 406 (828)
.++.+||+||+|+||..+|.++|+.+-..-..-.|+.-.+...+. .|+.-+. .- .-.. +.+.+...+ .
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 456799999999999999999998873321111122111111110 0111110 00 0112 223333222 1
Q ss_pred --CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCC
Q 003349 407 --CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPG 484 (828)
Q Consensus 407 --~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~ 484 (828)
...|++|+++|++.... .|+||..|++. ..+++||++|+.++.+.|.++||+..+.|+.
T Consensus 86 ~~~~KV~II~~ae~m~~~A----aNaLLK~LEEP---------------p~~t~fiLit~~~~~lLpTI~SRCq~~~~~~ 146 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQS----ANSLLKLIEEP---------------PKNTYGIFTTRNENNILNTILSRCVQYVVLS 146 (261)
T ss_pred cCCCEEEEeccHhhhCHHH----HHHHHHhhcCC---------------CCCeEEEEEECChHhCchHhhhheeeeecCC
Confidence 23499999999999876 89999999964 4577999999999999999999999888988
Q ss_pred C
Q 003349 485 Y 485 (828)
Q Consensus 485 ~ 485 (828)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 7
No 265
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.40 E-value=3.4e-07 Score=95.44 Aligned_cols=123 Identities=19% Similarity=0.295 Sum_probs=72.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEeccc
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 417 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid 417 (828)
.+++|+||||||||+|+.++|..+ +..+..+++..... .+..... -.......+.+.+. ...+|+|||++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~--~l~~~~~-~~~~~~~~~l~~l~----~~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS--AMKDTFS-NSETSEEQLLNDLS----NVDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH--HHHHHHh-hccccHHHHHHHhc----cCCEEEEeCCC
Confidence 479999999999999999999988 44555554433211 1111100 00111122333332 24599999999
Q ss_pred ccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-----CCCccccCceE-----EEEcCCCC
Q 003349 418 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRME-----VIELPGYT 486 (828)
Q Consensus 418 ~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-----~l~~aLl~R~~-----~i~~~~~~ 486 (828)
....+. .....|+++++.++.. +-.+|.|||... .+...+++|+. +|.|...|
T Consensus 173 ~~~~s~--~~~~~l~~Ii~~Ry~~--------------~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 173 VQTESR--YEKVIINQIVDRRSSS--------------KRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred CCCCCH--HHHHHHHHHHHHHHhC--------------CCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCCc
Confidence 875332 1245788898865321 235778888763 46666777761 46666544
No 266
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.40 E-value=9.3e-07 Score=90.45 Aligned_cols=142 Identities=20% Similarity=0.291 Sum_probs=90.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHH------hCCCeEEEecCCc---CchhhhccCcccc-cccCcchHHHHHHhcCCCCc
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASA------LGRKFIRISLGGV---KDEADIRGHRRTY-IGSMPGRLIDGLKRVGVCNP 409 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~------l~~~~~~i~~~~~---~~~~~l~g~~~~~-vg~~~g~l~~~~~~~~~~~~ 409 (828)
...+||.||+|.|||.||+.+... +..+|+.++|... ..++.+.|+.++- .|... .-...++.+. .+
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~-~r~gllrsad--gg 284 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARE-SREGLLRSAD--GG 284 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchh-hhhhhhccCC--Cc
Confidence 445899999999999999988654 3568899998765 4456667765442 22221 1122333332 56
Q ss_pred EEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-------CCCCccccCceEEEEc
Q 003349 410 VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-------QPIPPPLLDRMEVIEL 482 (828)
Q Consensus 410 vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-------~~l~~aLl~R~~~i~~ 482 (828)
.+|+|||..+..+. +..|+..+++ ++|......+.+. +++-+|+.|-+. ..+.+.|.-|+....|
T Consensus 285 mlfldeigelgade----qamllkaiee---krf~pfgsdr~v~-sdfqliagtvrdlrq~vaeg~fredl~arinlwtf 356 (531)
T COG4650 285 MLFLDEIGELGADE----QAMLLKAIEE---KRFYPFGSDRQVS-SDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 (531)
T ss_pred eEehHhhhhcCccH----HHHHHHHHHh---hccCCCCCccccc-cchHHhhhhHHHHHHHHhccchHHHHHHhhheeee
Confidence 99999999998765 8999999985 4565544444442 344455543322 3677778888875455
Q ss_pred CCCCHHHHHH
Q 003349 483 PGYTPEEKLR 492 (828)
Q Consensus 483 ~~~~~ee~~~ 492 (828)
..|...++.+
T Consensus 357 ~lpgl~qr~e 366 (531)
T COG4650 357 TLPGLRQRQE 366 (531)
T ss_pred eccccccCcc
Confidence 4444444443
No 267
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.39 E-value=3.3e-07 Score=99.80 Aligned_cols=125 Identities=17% Similarity=0.252 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecc
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 416 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEi 416 (828)
+.+++|+||||||||+|+.++|+.+ +..+..++...+.. .+... .+ ... ......+.... ...+|+||++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~--~l~~~--~~-~~~-~~~~~~~~~l~-~~DLLIIDDl 255 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE--ILREI--RF-NND-KELEEVYDLLI-NCDLLIIDDL 255 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH--HHHHH--Hh-ccc-hhHHHHHHHhc-cCCEEEEecc
Confidence 3679999999999999999999987 33444444333211 11100 00 000 01111122111 2359999999
Q ss_pred cccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-----CCCccccCce----EEEEcCCCCH
Q 003349 417 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRM----EVIELPGYTP 487 (828)
Q Consensus 417 d~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-----~l~~aLl~R~----~~i~~~~~~~ 487 (828)
....... ...+.|+++++.+... +-.+|.|||..- .+++.+.+|+ .++.|...+.
T Consensus 256 G~e~~t~--~~~~~Lf~iin~R~~~--------------~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d~ 319 (329)
T PRK06835 256 GTEKITE--FSKSELFNLINKRLLR--------------QKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGEDI 319 (329)
T ss_pred CCCCCCH--HHHHHHHHHHHHHHHC--------------CCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcCh
Confidence 8765332 2367888998865321 124677888652 4677888887 2577766543
No 268
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.38 E-value=8.3e-07 Score=81.41 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=53.7
Q ss_pred hcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCC-CCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 302 LDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDA-RGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 302 ~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~-~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.++..++..|.+.++||.-+++.+...+......+.+ ++-++.|+||||||||.+++.||+.+
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4678899999999999999999999998876654443 34467799999999999999999986
No 269
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.37 E-value=9.8e-06 Score=92.65 Aligned_cols=203 Identities=20% Similarity=0.215 Sum_probs=122.6
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC--------C--CeEEEecCCcCchhhhcc
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG--------R--KFIRISLGGVKDEADIRG 384 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~--------~--~~~~i~~~~~~~~~~l~g 384 (828)
+-+.+.-...|-.++...... ...+..+.+.|-||||||.+++.+-+.|. . .++.++.--+..+.++.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHH
Confidence 335555555665555543332 23445788999999999999998888662 2 344444333344443332
Q ss_pred C-cccccccCcc------hHHHHHHh--cCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCC
Q 003349 385 H-RRTYIGSMPG------RLIDGLKR--VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 385 ~-~~~~vg~~~g------~l~~~~~~--~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
. +..+.|.... .+...|.. ......|++|||+|.+.... |..|+.++|.... ..+
T Consensus 477 ~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~----QdVlYn~fdWpt~------------~~s 540 (767)
T KOG1514|consen 477 KIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS----QDVLYNIFDWPTL------------KNS 540 (767)
T ss_pred HHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc----HHHHHHHhcCCcC------------CCC
Confidence 1 1122232211 12222321 11223399999999998766 8999999985421 235
Q ss_pred CcEEEEecCCCC----CCCccccCceE--EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 456 KVIFVATANRAQ----PIPPPLLDRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 456 ~viiI~TtN~~~----~l~~aLl~R~~--~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
..+||+-+|..+ .|..-.-+|+. .|.|.+|+.+++.+|+...|.. + ..+..++++.++.....
T Consensus 541 KLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~-------~----~~f~~~aielvarkVAa 609 (767)
T KOG1514|consen 541 KLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKG-------L----DAFENKAIELVARKVAA 609 (767)
T ss_pred ceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcc-------h----hhcchhHHHHHHHHHHh
Confidence 678888888776 23333345764 6999999999999999888632 1 35677888877775544
Q ss_pred hhchHHHHHHHHHHHHHHH
Q 003349 530 EAGVRNLERNLAALARAAA 548 (828)
Q Consensus 530 ~~g~R~l~~~i~~l~~~a~ 548 (828)
-+| +. |..-.+|+.|+
T Consensus 610 vSG--Da-Rraldic~RA~ 625 (767)
T KOG1514|consen 610 VSG--DA-RRALDICRRAA 625 (767)
T ss_pred ccc--cH-HHHHHHHHHHH
Confidence 444 22 23335665544
No 270
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3.5e-06 Score=92.79 Aligned_cols=133 Identities=24% Similarity=0.337 Sum_probs=84.9
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcc----hHHHHHHhcCCCC-cEEEEec
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPG----RLIDGLKRVGVCN-PVMLLDE 415 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g----~l~~~~~~~~~~~-~vl~iDE 415 (828)
..+||.||||+|||+||-.+|...+-||+.+- ++. ..+|.++. .+...|..+..++ .|+++|+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKii-----Spe-------~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDd 606 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKII-----SPE-------DMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDD 606 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEe-----ChH-------HccCccHHHHHHHHHHHHHHhhcCcceEEEEcc
Confidence 47999999999999999999999999999874 222 23444443 3556666655432 3999999
Q ss_pred ccccCCCC------CCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCC-ccccCceE-EEEcCCCCH
Q 003349 416 IDKTGSDV------RGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIP-PPLLDRME-VIELPGYTP 487 (828)
Q Consensus 416 id~l~~~~------~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~-~aLl~R~~-~i~~~~~~~ 487 (828)
|+.+..-. .+-...+|+-+|...- -.-++.+|++||....-|. -.+++-|+ .+++|.++.
T Consensus 607 iErLiD~vpIGPRfSN~vlQaL~VllK~~p------------pkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 607 IERLLDYVPIGPRFSNLVLQALLVLLKKQP------------PKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hhhhhcccccCchhhHHHHHHHHHHhccCC------------CCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 99986322 1112334444443211 1123457777776554222 23456676 799999888
Q ss_pred -HHHHHHHHHh
Q 003349 488 -EEKLRIAMRH 497 (828)
Q Consensus 488 -ee~~~Il~~~ 497 (828)
++..+++...
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 6677776653
No 271
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.33 E-value=6.6e-07 Score=94.23 Aligned_cols=104 Identities=25% Similarity=0.430 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
.+.+++|+||||||||+||-+|++.+- .++..++..+. ...+...... |.....+...+.. .++++|||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el--~~~Lk~~~~~--~~~~~~l~~~l~~----~dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL--LSKLKAAFDE--GRLEEKLLRELKK----VDLLIIDD 175 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH--HHHHHHHHhc--CchHHHHHHHhhc----CCEEEEec
Confidence 667899999999999999999998874 34444444332 1222221111 2333334443443 45999999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ 467 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~ 467 (828)
+.....+. ...+.+++++....... .. +.|+|.+.
T Consensus 176 lG~~~~~~--~~~~~~~q~I~~r~~~~--------------~~-~~tsN~~~ 210 (254)
T COG1484 176 IGYEPFSQ--EEADLLFQLISRRYESR--------------SL-IITSNLSF 210 (254)
T ss_pred ccCccCCH--HHHHHHHHHHHHHHhhc--------------cc-eeecCCCh
Confidence 99866443 12577888877543221 23 88999764
No 272
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.27 E-value=2.2e-06 Score=88.75 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=78.5
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTG 420 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~ 420 (828)
..-.++||+|||||++++.+|+.+|+.++.++|+...+.. .+.+.+.-....+..++|||++++.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~---------------~l~ril~G~~~~GaW~cfdefnrl~ 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQ---------------SLSRILKGLAQSGAWLCFDEFNRLS 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HH---------------HHHHHHHHHHHHT-EEEEETCCCSS
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHH---------------HHHHHHHHHhhcCchhhhhhhhhhh
Confidence 3456899999999999999999999999999999866533 2333333333235589999999998
Q ss_pred CCCCCChHHHHHHhcC-------cccccccccccCCeeecC-CCcEEEEecCCCC----CCCccccCceEEEEcCCCCHH
Q 003349 421 SDVRGDPASALLEVLD-------PEQNKTFNDHYLNVPFDL-SKVIFVATANRAQ----PIPPPLLDRMEVIELPGYTPE 488 (828)
Q Consensus 421 ~~~~~~~~~~Ll~~ld-------~~~~~~~~~~~~~~~~~~-~~viiI~TtN~~~----~l~~aLl~R~~~i~~~~~~~e 488 (828)
.+. .+.+-+.+. ..+. .+. ..+..+.. .++-+.+|.|+.. .+|+.|+.-|..+.+..|+..
T Consensus 98 ~~v----LS~i~~~i~~i~~al~~~~~-~~~--~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~ 170 (231)
T PF12774_consen 98 EEV----LSVISQQIQSIQDALRAKQK-SFT--LEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLS 170 (231)
T ss_dssp HHH----HHHHHHHHHHHHHHHHCTSS-EEE--ETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HH
T ss_pred HHH----HHHHHHHHHHHHHhhccccc-ccc--cCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHH
Confidence 655 444333222 1111 111 12333322 3466777888663 899999999998888888876
Q ss_pred HHHHHH
Q 003349 489 EKLRIA 494 (828)
Q Consensus 489 e~~~Il 494 (828)
...++.
T Consensus 171 ~I~ei~ 176 (231)
T PF12774_consen 171 LIAEIL 176 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 273
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.25 E-value=4.1e-06 Score=93.08 Aligned_cols=161 Identities=23% Similarity=0.280 Sum_probs=99.5
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHhhhCCCC-----CC-CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh
Q 003349 307 AKERLDSDHYGLVRVKQRIIEYLAVRKLKPDA-----RG-PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 380 (828)
Q Consensus 307 ~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~-----~~-~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~ 380 (828)
+.+.|...|+|.+.+|+.|.-.+....-..-. +| -++||+|.|-|.||.|.|.+-+...... .-+|-.+
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI---~TTGRGS-- 369 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAI---ATTGRGS-- 369 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccc---cccCCCC--
Confidence 45566788999999999998766543211111 22 3799999999999999999887653221 1111100
Q ss_pred hhccCcccccccCc--------c--hHHH-HHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCC
Q 003349 381 DIRGHRRTYIGSMP--------G--RLID-GLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLN 449 (828)
Q Consensus 381 ~l~g~~~~~vg~~~--------g--~l~~-~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~ 449 (828)
.-+|-+. | ++.. ++-.+ ..+|++|||+|+++.-. --++.++|+....+ .......
T Consensus 370 -------SGVGLTAAVTtD~eTGERRLEAGAMVLA--DRGVVCIDEFDKMsDiD----RvAIHEVMEQqtVT-IaKAGIH 435 (818)
T KOG0479|consen 370 -------SGVGLTAAVTTDQETGERRLEAGAMVLA--DRGVVCIDEFDKMSDID----RVAIHEVMEQQTVT-IAKAGIH 435 (818)
T ss_pred -------CCccceeEEeeccccchhhhhcCceEEc--cCceEEehhcccccchh----HHHHHHHHhcceEE-eEeccch
Confidence 1111110 0 1110 11112 25699999999998643 47889999864322 2222222
Q ss_pred eeecCCCcEEEEecCCCC-------------CCCccccCceE--EEEcCCCCH
Q 003349 450 VPFDLSKVIFVATANRAQ-------------PIPPPLLDRME--VIELPGYTP 487 (828)
Q Consensus 450 ~~~~~~~viiI~TtN~~~-------------~l~~aLl~R~~--~i~~~~~~~ 487 (828)
... ...|.|++++|+.+ .|+..|++||+ +|.++..+.
T Consensus 436 asL-NARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~ 487 (818)
T KOG0479|consen 436 ASL-NARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDA 487 (818)
T ss_pred hhh-ccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccc
Confidence 222 35699999999975 78999999998 355555554
No 274
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.24 E-value=1.3e-06 Score=79.34 Aligned_cols=107 Identities=18% Similarity=0.271 Sum_probs=56.4
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCCC
Q 003349 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSD 422 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~ 422 (828)
+.|+||||+|||++|+.|++.+...+..-.... -|..... ..+...-...+++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~------------vy~~~~~----~~~w~gY~~q~vvi~DD~~~~~~~ 64 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDS------------VYTRNPG----DKFWDGYQGQPVVIIDDFGQDNDG 64 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCc------------EEeCCCc----cchhhccCCCcEEEEeecCccccc
Confidence 469999999999999999988753331000000 0110000 111111123569999999987754
Q ss_pred CCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 423 VRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 423 ~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
........++++++......-.....+....+..-+||+|||.
T Consensus 65 ~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 65 YNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred cchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 2111367778887743211111111111122334588899984
No 275
>PRK06921 hypothetical protein; Provisional
Probab=98.23 E-value=2.1e-06 Score=91.19 Aligned_cols=123 Identities=20% Similarity=0.282 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCC----CeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGR----KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLD 414 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~----~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iD 414 (828)
.+.+++|+||||+|||+|+.++|+.+.. ....++..... ..+.. .+ +...+.+... ...++|+||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~--~~l~~---~~-----~~~~~~~~~~-~~~dlLiID 184 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGF--GDLKD---DF-----DLLEAKLNRM-KKVEVLFID 184 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHH--HHHHH---HH-----HHHHHHHHHh-cCCCEEEEe
Confidence 4568999999999999999999998743 23333322111 11100 00 1111222221 124699999
Q ss_pred cccc-cCCC--CCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC----CCCccccCce----E--EEE
Q 003349 415 EIDK-TGSD--VRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----PIPPPLLDRM----E--VIE 481 (828)
Q Consensus 415 Eid~-l~~~--~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~----~l~~aLl~R~----~--~i~ 481 (828)
|++. +... ........|+.+++.++.. +-.+|.|||.+- .+++.+.+|+ . ++.
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~~--------------~k~tIitsn~~~~el~~~~~~l~sRi~~r~~~~~i~ 250 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRYLN--------------HKPILISSELTIDELLDIDEALGSRIVEMCKDYLVI 250 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHHHC--------------CCCEEEECCCCHHHHhhhhhHHHHHHHHhccCeEEE
Confidence 9955 1111 1111246788888755321 113577888652 3345555553 2 456
Q ss_pred cCCCC
Q 003349 482 LPGYT 486 (828)
Q Consensus 482 ~~~~~ 486 (828)
|...|
T Consensus 251 ~~g~s 255 (266)
T PRK06921 251 IKGDS 255 (266)
T ss_pred ecCcc
Confidence 65543
No 276
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.11 E-value=3.4e-06 Score=95.76 Aligned_cols=61 Identities=23% Similarity=0.426 Sum_probs=48.9
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC-CCeEEEe
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG-RKFIRIS 372 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~-~~~~~i~ 372 (828)
..+++|++++++++++++......-..+++++||+||||+|||+||++||+.+. .+.+.+.
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~k 136 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLK 136 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeec
Confidence 457999999999999999544333345778999999999999999999999884 3555554
No 277
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.11 E-value=1.5e-05 Score=82.67 Aligned_cols=185 Identities=19% Similarity=0.208 Sum_probs=87.8
Q ss_pred cchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE-EEecCC--cCchh---hh-------
Q 003349 316 YGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI-RISLGG--VKDEA---DI------- 382 (828)
Q Consensus 316 ~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~-~i~~~~--~~~~~---~l------- 382 (828)
+|.++..+.|.+.+.. .....++++||.|+|||+|++.+...+..... .+.+.. ..... ..
T Consensus 2 ~gR~~el~~l~~~l~~------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 2 FGREKELEKLKELLES------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHH
Confidence 5666667777665542 23567999999999999999999998843221 111111 11110 00
Q ss_pred ------ccC-ccccc---------ccCcchHHHH---HHhcCCCCcEEEEecccccC-CCCC-CChHHHHHHhcCccccc
Q 003349 383 ------RGH-RRTYI---------GSMPGRLIDG---LKRVGVCNPVMLLDEIDKTG-SDVR-GDPASALLEVLDPEQNK 441 (828)
Q Consensus 383 ------~g~-~~~~v---------g~~~g~l~~~---~~~~~~~~~vl~iDEid~l~-~~~~-~~~~~~Ll~~ld~~~~~ 441 (828)
.+. ..... ......+... +.... ...|++|||++.+. .... .+-...|...++...
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-- 152 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKG-KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-- 152 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCH-CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcC-CcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc--
Confidence 000 00000 0011122222 23222 12699999999998 2211 111344555554210
Q ss_pred ccccccCCeeecCCCcE-EEEecCCC-----CCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCccccc
Q 003349 442 TFNDHYLNVPFDLSKVI-FVATANRA-----QPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI 515 (828)
Q Consensus 442 ~~~~~~~~~~~~~~~vi-iI~TtN~~-----~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i 515 (828)
...++. |+++++.. ..-..++..|+..+.+++++.++..++++..+. .. ..+..
T Consensus 153 -----------~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~-----~~----~~~~~ 212 (234)
T PF01637_consen 153 -----------SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFK-----EL----IKLPF 212 (234)
T ss_dssp -------------TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHH-----CC---------
T ss_pred -----------ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHH-----Hh----hcccC
Confidence 112333 34443321 234566788998899999999999999888642 11 11234
Q ss_pred CHHHHHHHHHHhhh
Q 003349 516 PEAMVKLVIQRYTR 529 (828)
Q Consensus 516 ~~~~l~~l~~~~~~ 529 (828)
+++.++.+..-+.+
T Consensus 213 ~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 213 SDEDIEEIYSLTGG 226 (234)
T ss_dssp -HHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCC
Confidence 88888877764433
No 278
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.3e-05 Score=91.31 Aligned_cols=177 Identities=25% Similarity=0.349 Sum_probs=123.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCC-cEEEEecc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEI 416 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~-~vl~iDEi 416 (828)
.+...++++||||+|||+++++++.. +..+..++... .. .++.|.....+...+..+.... +++++||+
T Consensus 16 ~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~ 85 (494)
T COG0464 16 EPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPE--IL-------SKYVGESELRLRELFEEAEKLAPSIIFIDEI 85 (494)
T ss_pred CCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcch--hh-------hhhhhHHHHHHHHHHHHHHHhCCCeEeechh
Confidence 45567899999999999999999998 44332222221 11 2567777777777777766544 59999999
Q ss_pred cccCCCCCC-------ChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCC
Q 003349 417 DKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYT 486 (828)
Q Consensus 417 d~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~ 486 (828)
+.+.+.+.. ...+.++..++... ... +++++.+|.+..+++++++ ||+ .+.+..++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-------------~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (494)
T COG0464 86 DALAPKRSSDQGEVERRVVAQLLALMDGLK-------------RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPD 151 (494)
T ss_pred hhcccCccccccchhhHHHHHHHHhccccc-------------CCc-eEEEeecCCccccChhHhCccccceeeecCCCC
Confidence 999987643 12566777776432 233 6788899999999999986 887 68999999
Q ss_pred HHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 487 PEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 487 ~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
...+.+|...+... . ..-.+.....++....+..| +.+..+|++++...+++
T Consensus 152 ~~~~~ei~~~~~~~-------~----~~~~~~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~r 203 (494)
T COG0464 152 EAGRLEILQIHTRL-------M----FLGPPGTGKTLAARTVGKSG-----ADLGALAKEAALRELRR 203 (494)
T ss_pred HHHHHHHHHHHHhc-------C----CCcccccHHHHHHhcCCccH-----HHHHHHHHHHHHHHHHh
Confidence 98888888776421 0 11113445556665555555 77888888888877776
No 279
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.08 E-value=1.3e-05 Score=86.67 Aligned_cols=74 Identities=24% Similarity=0.374 Sum_probs=45.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
.+.+++|+||||||||+|+.++|+.+ +.+...+.+..+.. .+... + + .+.+.+.+.... ..++|+|||
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~--~lk~~---~-~--~~~~~~~l~~l~-~~dlLiIDD 225 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR--ELKNS---I-S--DGSVKEKIDAVK-EAPVLMLDD 225 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH--HHHHH---H-h--cCcHHHHHHHhc-CCCEEEEec
Confidence 45689999999999999999999988 45555555443211 11110 1 1 112222222221 256999999
Q ss_pred ccccCC
Q 003349 416 IDKTGS 421 (828)
Q Consensus 416 id~l~~ 421 (828)
+..-..
T Consensus 226 iG~e~~ 231 (306)
T PRK08939 226 IGAEQM 231 (306)
T ss_pred CCCccc
Confidence 987654
No 280
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.06 E-value=3.5e-06 Score=79.27 Aligned_cols=91 Identities=27% Similarity=0.418 Sum_probs=52.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh--------CCCeEEEecCCcCchhhhccCcccccc------cCcc----hHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL--------GRKFIRISLGGVKDEADIRGHRRTYIG------SMPG----RLIDGL 401 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l--------~~~~~~i~~~~~~~~~~l~g~~~~~vg------~~~g----~l~~~~ 401 (828)
+..++++||||+|||++++.+++.+ ..++..+++........+...-....+ .... .+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568899999999999999999987 566677776654433333211100011 1112 233344
Q ss_pred HhcCCCCcEEEEeccccc-CCCCCCChHHHHHHhcC
Q 003349 402 KRVGVCNPVMLLDEIDKT-GSDVRGDPASALLEVLD 436 (828)
Q Consensus 402 ~~~~~~~~vl~iDEid~l-~~~~~~~~~~~Ll~~ld 436 (828)
..... .+++|||+|.+ ... ..+.|..+++
T Consensus 84 ~~~~~--~~lviDe~~~l~~~~----~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRV--VLLVIDEADHLFSDE----FLEFLRSLLN 113 (131)
T ss_dssp HHCTE--EEEEEETTHHHHTHH----HHHHHHHHTC
T ss_pred HhcCC--eEEEEeChHhcCCHH----HHHHHHHHHh
Confidence 43322 48999999998 422 2566666555
No 281
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.04 E-value=1.7e-05 Score=87.35 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHH-hCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEeccc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASA-LGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 417 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~-l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid 417 (828)
.+.++++.||||||||+++.+++.. .-... +..+...+... +.......-....+++|||+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG------~f~T~a~Lf~~-----------L~~~~lg~v~~~DlLI~DEvg 270 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG------GTITVAKLFYN-----------ISTRQIGLVGRWDVVAFDEVA 270 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC------CcCcHHHHHHH-----------HHHHHHhhhccCCEEEEEcCC
Confidence 5678999999999999999998866 21111 22222222211 111111111123599999999
Q ss_pred ccCCCCCCChHHHHHHhcCcc
Q 003349 418 KTGSDVRGDPASALLEVLDPE 438 (828)
Q Consensus 418 ~l~~~~~~~~~~~Ll~~ld~~ 438 (828)
.+..+...+..+.|..-|+.+
T Consensus 271 ylp~~~~~~~v~imK~yMesg 291 (449)
T TIGR02688 271 TLKFAKPKELIGILKNYMESG 291 (449)
T ss_pred CCcCCchHHHHHHHHHHHHhC
Confidence 977665434456666666643
No 282
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.01 E-value=7.5e-05 Score=83.34 Aligned_cols=38 Identities=29% Similarity=0.580 Sum_probs=32.0
Q ss_pred CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 335 KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 335 ~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.+...+..+||+||+||||||+++.||+.+|..+....
T Consensus 105 ~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 105 TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 34456678999999999999999999999998777544
No 283
>PHA00729 NTP-binding motif containing protein
Probab=97.94 E-value=1.5e-05 Score=81.41 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=63.2
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhc---CCCCcEEEEeccc
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV---GVCNPVMLLDEID 417 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~---~~~~~vl~iDEid 417 (828)
.+++++|+||||||++|.+++..++..+..+.... .. ...+....++ ....+.+.+..+ ....++++|||+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~--~~-~d~~~~~~fi--d~~~Ll~~L~~a~~~~~~~dlLIIDd~G 92 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKD--DA-WQYVQNSYFF--ELPDALEKIQDAIDNDYRIPLIIFDDAG 92 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchh--hH-HhcCCcEEEE--EHHHHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 37999999999999999999998763332222110 00 0000000011 111222222221 1223688999965
Q ss_pred ccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHh
Q 003349 418 KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRH 497 (828)
Q Consensus 418 ~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~ 497 (828)
.-..+- .+.. .+. .....+.+++++|++++.|.+++.++..+.++..
T Consensus 93 ~~~~~~------------------~wh~---------~~~------~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 93 IWLSKY------------------VWYE---------DYM------KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred hhhccc------------------chhh---------hcc------chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 322110 0000 000 0011356778888888888888888888877764
No 284
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.1e-05 Score=91.63 Aligned_cols=154 Identities=23% Similarity=0.308 Sum_probs=99.4
Q ss_pred cccch-HHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchhhh
Q 003349 314 DHYGL-VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 382 (828)
Q Consensus 314 ~i~G~-~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~~l 382 (828)
-++|. ++-.+++++.+... .+.+-+|+|.||+|||.++.-+++.. +..++.++++....
T Consensus 187 Pvigr~deeirRvi~iL~Rr------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~a---- 256 (898)
T KOG1051|consen 187 PVIGRHDEEIRRVIEILSRK------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVA---- 256 (898)
T ss_pred CccCCchHHHHHHHHHHhcc------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhccc----
Confidence 35565 77777787777532 22466799999999999999999876 23444555544222
Q ss_pred ccCcccccccCcchHHHHHHhcCCC--CcEEEEecccccCCCCCC----ChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRG----DPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~~~--~~vl~iDEid~l~~~~~~----~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
| ..+-|..++++....+..... .-|+|+||++-+...... +..+.|-..+.. ..
T Consensus 257 -G--a~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r-----------------g~ 316 (898)
T KOG1051|consen 257 -G--AKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR-----------------GG 316 (898)
T ss_pred -C--cccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc-----------------CC
Confidence 1 245666777777777754422 228999999998765432 223333333321 12
Q ss_pred cEEEEecC-CCC----CCCccccCceEEEEcCCCCHHHHHHHHHHh
Q 003349 457 VIFVATAN-RAQ----PIPPPLLDRMEVIELPGYTPEEKLRIAMRH 497 (828)
Q Consensus 457 viiI~TtN-~~~----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~ 497 (828)
+.+|+||. ... .=+|+|-+||+.+.++.|+.++...|+...
T Consensus 317 l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l 362 (898)
T KOG1051|consen 317 LWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGL 362 (898)
T ss_pred eEEEecccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhh
Confidence 56777554 222 568999999998888888887766666543
No 285
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.88 E-value=4.2e-05 Score=97.05 Aligned_cols=147 Identities=23% Similarity=0.289 Sum_probs=107.7
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCc----ccccccCcchHHHHHHhcCCCCcEEEEecc
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR----RTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 416 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~----~~~vg~~~g~l~~~~~~~~~~~~vl~iDEi 416 (828)
-.+||-||.|+|||++++-+|...+..+.+++--.-++..++.|.+ .+-.....+.+.++++. ...+++||+
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~----G~~~vlD~l 516 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRN----GDWIVLDEL 516 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHh----CCEEEeccc
Confidence 3689999999999999999999999999999877766766666521 11122334567777776 458999999
Q ss_pred cccCCCCCCChHHHHHHhcCcccccccccccCCeee-cCCCcEEEEecCCCC------CCCccccCceEEEEcCCCCHHH
Q 003349 417 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF-DLSKVIFVATANRAQ------PIPPPLLDRMEVIELPGYTPEE 489 (828)
Q Consensus 417 d~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~-~~~~viiI~TtN~~~------~l~~aLl~R~~~i~~~~~~~ee 489 (828)
+.++.++ ..+|.++++... ..|.... .+.+ ...++...+|-|++. .+..+|++||..++|.....++
T Consensus 517 nla~~dv----L~aLnrllddnR-el~ipe~-~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e 590 (1856)
T KOG1808|consen 517 NLAPHDV----LEALNRLLDDNR-ELFIPET-QRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFIELHFDDIGEEE 590 (1856)
T ss_pred cccchHH----HHHHHhhhhhhc-ccccccc-ceeeccCcchhhhhhccCccccchhhhhhhcccccchhhhhhhcCchh
Confidence 9998777 999999998732 1222221 1122 234567788989884 6788999999988888888887
Q ss_pred HHHHHHHh
Q 003349 490 KLRIAMRH 497 (828)
Q Consensus 490 ~~~Il~~~ 497 (828)
...|+...
T Consensus 591 ~~~i~~~~ 598 (1856)
T KOG1808|consen 591 LEEILEHR 598 (1856)
T ss_pred hhhhhccc
Confidence 77777654
No 286
>PF05729 NACHT: NACHT domain
Probab=97.86 E-value=9.6e-05 Score=72.20 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=72.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCC-------eE--EEecCCcCchhh---hccCcccccccCcchHH----HHHHhcC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRK-------FI--RISLGGVKDEAD---IRGHRRTYIGSMPGRLI----DGLKRVG 405 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~-------~~--~i~~~~~~~~~~---l~g~~~~~vg~~~g~l~----~~~~~~~ 405 (828)
.++++|+||+|||++++.++..+... .+ .+.+........ +...-............ ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~- 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN- 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC-
Confidence 57899999999999999999877211 11 222222211110 00000000001111111 122221
Q ss_pred CCCcEEEEecccccCCCCCC----ChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCC-CccccCceEEE
Q 003349 406 VCNPVMLLDEIDKTGSDVRG----DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPI-PPPLLDRMEVI 480 (828)
Q Consensus 406 ~~~~vl~iDEid~l~~~~~~----~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l-~~aLl~R~~~i 480 (828)
..-+++||-+|.+...... .....|.+++... ...++.++.|+++...- ....+.....+
T Consensus 81 -~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~--------------~~~~~~liit~r~~~~~~~~~~~~~~~~~ 145 (166)
T PF05729_consen 81 -KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA--------------LPPGVKLIITSRPRAFPDLRRRLKQAQIL 145 (166)
T ss_pred -CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc--------------cCCCCeEEEEEcCChHHHHHHhcCCCcEE
Confidence 2338999999998864321 1122333444320 12345666666543321 11112222578
Q ss_pred EcCCCCHHHHHHHHHHhh
Q 003349 481 ELPGYTPEEKLRIAMRHL 498 (828)
Q Consensus 481 ~~~~~~~ee~~~Il~~~l 498 (828)
.+.+++.++..+++++++
T Consensus 146 ~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 146 ELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred EECCCCHHHHHHHHHHHh
Confidence 999999999999998876
No 287
>PHA02774 E1; Provisional
Probab=97.81 E-value=0.00018 Score=82.15 Aligned_cols=120 Identities=23% Similarity=0.287 Sum_probs=69.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE-EEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI-RISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 416 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~-~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEi 416 (828)
++...++|+||||||||++|-+|++.++...+ .++.. + .+ ..+.+.. ..+++|||+
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~---s---------~F-------wLqpl~d----~ki~vlDD~ 488 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK---S---------HF-------WLQPLAD----AKIALLDDA 488 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc---c---------cc-------ccchhcc----CCEEEEecC
Confidence 44458999999999999999999999864333 24321 1 00 0112222 249999999
Q ss_pred cccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCcc---ccCceEEEEcCCC
Q 003349 417 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPP---LLDRMEVIELPGY 485 (828)
Q Consensus 417 d~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~a---Ll~R~~~i~~~~~ 485 (828)
-...-+- ....|..+||+... -.+....-++.....-+|.|||..-.-++. |.+|+..+.|+.+
T Consensus 489 t~~~w~y---~d~~Lrn~LdG~~v--~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~ 555 (613)
T PHA02774 489 THPCWDY---IDTYLRNALDGNPV--SIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNP 555 (613)
T ss_pred cchHHHH---HHHHHHHHcCCCcc--eeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCC
Confidence 3221110 12357778886421 122222223333445678899966544444 4569988888753
No 288
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00015 Score=73.80 Aligned_cols=138 Identities=14% Similarity=0.051 Sum_probs=91.4
Q ss_pred CCeEEEEcCCC-CchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCc-----ccccccC-cchHHHHHHhcCC--CCcE
Q 003349 340 GPVLCFVGPPG-VGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR-----RTYIGSM-PGRLIDGLKRVGV--CNPV 410 (828)
Q Consensus 340 ~~~lLL~GppG-tGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~-----~~~vg~~-~g~l~~~~~~~~~--~~~v 410 (828)
...+||.|..+ +||..++..+++.+.... +....-.|...+.... ...++-. -..+.+.+...+. ...|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~--i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNS--IPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccC--cccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 35699999998 999999999998874321 1111111111110000 0111110 0123333333333 2339
Q ss_pred EEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHH
Q 003349 411 MLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEK 490 (828)
Q Consensus 411 l~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~ 490 (828)
++|+++|++.... .|+||..|++. ..+++||++|..++.+.|.++|||..+.|+.++...-
T Consensus 93 iII~~ae~mt~~A----ANALLKtLEEP---------------P~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~ 153 (263)
T PRK06581 93 AIIYSAELMNLNA----ANSCLKILEDA---------------PKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAY 153 (263)
T ss_pred EEEechHHhCHHH----HHHHHHhhcCC---------------CCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHH
Confidence 9999999999876 89999999964 3567889988899999999999999999999998777
Q ss_pred HHHHHHhh
Q 003349 491 LRIAMRHL 498 (828)
Q Consensus 491 ~~Il~~~l 498 (828)
.+.....+
T Consensus 154 ~e~~~~~~ 161 (263)
T PRK06581 154 NELYSQFI 161 (263)
T ss_pred HHHHHHhc
Confidence 76666554
No 289
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=8.6e-05 Score=70.50 Aligned_cols=25 Identities=44% Similarity=0.668 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.+.++|+||+||||++..++..+..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHh
Confidence 5889999999999999999988843
No 290
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.69 E-value=3.5e-05 Score=78.86 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|||||||.+.+|.......+.+.+.+
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g 64 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG 64 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 57889999999999999999999999866555554433
No 291
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.60 E-value=0.00038 Score=70.45 Aligned_cols=115 Identities=20% Similarity=0.283 Sum_probs=70.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTG 420 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~ 420 (828)
..++|.|+-|+|||++.+.|+..+.... ... .........+.. .-++.+||++.+.
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~~~d~----~~~----------------~~~kd~~~~l~~----~~iveldEl~~~~ 108 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEYFSDS----IND----------------FDDKDFLEQLQG----KWIVELDELDGLS 108 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHhccCc----ccc----------------CCCcHHHHHHHH----hHheeHHHHhhcc
Confidence 4678999999999999999965521111 000 001122233332 3489999999988
Q ss_pred CCCCCChHHHHHHhcCcccccccccccCCeee-cCCCcEEEEecCCCCCCCcc-ccCceEEEEcCC
Q 003349 421 SDVRGDPASALLEVLDPEQNKTFNDHYLNVPF-DLSKVIFVATANRAQPIPPP-LLDRMEVIELPG 484 (828)
Q Consensus 421 ~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~-~~~~viiI~TtN~~~~l~~a-Ll~R~~~i~~~~ 484 (828)
... .+.|-.++-... ..+...|..... -.+.++||+|||..+-|..+ =-+||-.|++..
T Consensus 109 k~~----~~~lK~~iT~~~-~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 109 KKD----VEALKSFITRRT-DTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred hhh----HHHHHHHhcccc-eeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 554 677766665432 223333333323 24568999999998755443 346898777765
No 292
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.59 E-value=0.00037 Score=75.06 Aligned_cols=154 Identities=22% Similarity=0.248 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHH--hCCCe---EEEecCCcCchhhhc-------cCc
Q 003349 319 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASA--LGRKF---IRISLGGVKDEADIR-------GHR 386 (828)
Q Consensus 319 ~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~--l~~~~---~~i~~~~~~~~~~l~-------g~~ 386 (828)
+.-+++|.+.+.... .....+.++|++|+|||+||+.+++. ....| +.++++...+...+. +..
T Consensus 2 e~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 344566666665321 35568999999999999999999977 44433 334444432222211 100
Q ss_pred -ccc-cccCcchHHHHHHh-cCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEec
Q 003349 387 -RTY-IGSMPGRLIDGLKR-VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA 463 (828)
Q Consensus 387 -~~~-vg~~~g~l~~~~~~-~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt 463 (828)
... .......+...+.. ....+.+++||+++... . ...+...+.. ...++.||.||
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~----~~~l~~~~~~---------------~~~~~kilvTT 136 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--D----LEELREPLPS---------------FSSGSKILVTT 136 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--H----H-------HC---------------HHSS-EEEEEE
T ss_pred ccccccccccccccccchhhhccccceeeeeeecccc--c----cccccccccc---------------ccccccccccc
Confidence 000 01111222222222 12235699999987643 0 1112211110 01245677787
Q ss_pred CCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhh
Q 003349 464 NRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHL 498 (828)
Q Consensus 464 N~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l 498 (828)
.... +-..+-.....+++++++.++-.+++....
T Consensus 137 R~~~-v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 170 (287)
T PF00931_consen 137 RDRS-VAGSLGGTDKVIELEPLSEEEALELFKKRA 170 (287)
T ss_dssp SCGG-GGTTHHSCEEEEECSS--HHHHHHHHHHHH
T ss_pred cccc-cccccccccccccccccccccccccccccc
Confidence 6532 111111225589999999999999988874
No 293
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.0024 Score=71.13 Aligned_cols=82 Identities=24% Similarity=0.340 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC-------CCeEEEecCCcCc--hhhhc------cCcccccccCcchHHHHHHh
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG-------RKFIRISLGGVKD--EADIR------GHRRTYIGSMPGRLIDGLKR 403 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~-------~~~~~i~~~~~~~--~~~l~------g~~~~~vg~~~g~l~~~~~~ 403 (828)
.+.+++|+||+|+||||++..+|..+. .....++++.+.. ..++. |.+ -........+...+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp-v~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP-VKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc-eEeeCcHHHHHHHHHH
Confidence 356899999999999999999997662 3455666655432 11121 111 1222333445555554
Q ss_pred cCCCCcEEEEecccccCCC
Q 003349 404 VGVCNPVMLLDEIDKTGSD 422 (828)
Q Consensus 404 ~~~~~~vl~iDEid~l~~~ 422 (828)
.. ...++++|+....+.+
T Consensus 252 ~~-~~DlVLIDTaGr~~~~ 269 (388)
T PRK12723 252 SK-DFDLVLVDTIGKSPKD 269 (388)
T ss_pred hC-CCCEEEEcCCCCCccC
Confidence 42 3469999999987643
No 294
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.56 E-value=7.4e-05 Score=82.55 Aligned_cols=127 Identities=24% Similarity=0.254 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC-CeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR-KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI 416 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~-~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEi 416 (828)
..+.++.|+||+|+|||+|+-.+...+.. .-.++-+..... ++...-..+.|.. ..+......-.....+|+|||+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~--~vh~~l~~~~~~~-~~l~~va~~l~~~~~lLcfDEF 136 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFML--DVHSRLHQLRGQD-DPLPQVADELAKESRLLCFDEF 136 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHH--HHHHHHHHHhCCC-ccHHHHHHHHHhcCCEEEEeee
Confidence 45678999999999999999999988854 222333222111 0000000111111 1222222222223459999999
Q ss_pred cccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC------C--------CCccccCceEEEEc
Q 003349 417 DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ------P--------IPPPLLDRMEVIEL 482 (828)
Q Consensus 417 d~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~------~--------l~~aLl~R~~~i~~ 482 (828)
.--.... .-.|-.+|+.. | ..++++|+|||.+- . +-+.|.+||+++.+
T Consensus 137 ~V~DiaD----Amil~rLf~~l----~----------~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~l 198 (362)
T PF03969_consen 137 QVTDIAD----AMILKRLFEAL----F----------KRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVEL 198 (362)
T ss_pred eccchhH----HHHHHHHHHHH----H----------HCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEe
Confidence 8643321 11122233211 1 23679999999862 1 12234467778888
Q ss_pred CCC
Q 003349 483 PGY 485 (828)
Q Consensus 483 ~~~ 485 (828)
...
T Consensus 199 d~~ 201 (362)
T PF03969_consen 199 DGG 201 (362)
T ss_pred cCC
Confidence 765
No 295
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.50 E-value=0.0022 Score=68.96 Aligned_cols=38 Identities=37% Similarity=0.656 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh----C-CCeEEEecCCc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL----G-RKFIRISLGGV 376 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l----~-~~~~~i~~~~~ 376 (828)
.+.+++|+||+|+||||++..+|..+ + .....++++.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45689999999999999999998766 3 45566666553
No 296
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.0022 Score=70.34 Aligned_cols=104 Identities=17% Similarity=0.302 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHhhh----CCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCc--hhhhccCc--
Q 003349 318 LVRVKQRIIEYLAVRKL----KPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD--EADIRGHR-- 386 (828)
Q Consensus 318 ~~~~~~~l~~~l~~~~~----~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~--~~~l~g~~-- 386 (828)
.+.+.+.+.+.+..... ....++.+++|+||+|+||||++..+|..+ +.+...++++.+.. ..++....
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~ 259 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADK 259 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhc
Confidence 45555555555543211 112356789999999999999999999766 44566677666544 22222111
Q ss_pred ---ccccccCcchHHHHHHhcC--CCCcEEEEecccccCC
Q 003349 387 ---RTYIGSMPGRLIDGLKRVG--VCNPVMLLDEIDKTGS 421 (828)
Q Consensus 387 ---~~~vg~~~g~l~~~~~~~~--~~~~vl~iDEid~l~~ 421 (828)
.-++...+..+..++.... ....++|+|=......
T Consensus 260 lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~ 299 (407)
T PRK12726 260 LDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYL 299 (407)
T ss_pred CCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcc
Confidence 1223445556666665543 2245899998877653
No 297
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.47 E-value=0.0003 Score=67.19 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..++++||+|||||+|.+++|.......+.+.+.|
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~G 64 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcC
Confidence 47888999999999999999999999877666666544
No 298
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.44 E-value=0.00074 Score=71.46 Aligned_cols=166 Identities=21% Similarity=0.405 Sum_probs=97.6
Q ss_pred cchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHH-HHH--HHhCCCeEEEecCCcCch--hhhccCcccc-
Q 003349 316 YGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS-SIA--SALGRKFIRISLGGVKDE--ADIRGHRRTY- 389 (828)
Q Consensus 316 ~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~-~la--~~l~~~~~~i~~~~~~~~--~~l~g~~~~~- 389 (828)
.|..+-.+.+.+++......+ .+..++++||.|+|||.+.- .++ +..+-+++.+.++|.... ..+.|-.+.+
T Consensus 27 ~g~~~~~~~l~~~lkqt~~~g--EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~ 104 (408)
T KOG2228|consen 27 FGVQDEQKHLSELLKQTILHG--ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLA 104 (408)
T ss_pred eehHHHHHHHHHHHHHHHHhc--CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHH
Confidence 355555566666666554432 33468899999999998764 333 366778888877764221 1222211111
Q ss_pred ---------cccCcc---hHHHHHHhcCC--CCc-EEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecC
Q 003349 390 ---------IGSMPG---RLIDGLKRVGV--CNP-VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 390 ---------vg~~~g---~l~~~~~~~~~--~~~-vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.|.... .+.+.+..... ..+ |+++||+|...+-.+ |..|+.++|-.|...
T Consensus 105 ~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r---QtllYnlfDisqs~r------------ 169 (408)
T KOG2228|consen 105 LELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR---QTLLYNLFDISQSAR------------ 169 (408)
T ss_pred HHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh---hHHHHHHHHHHhhcC------------
Confidence 122222 23333333222 122 567789998776432 788888888544221
Q ss_pred CCcEEEEecCCCC---CCCccccCceE---EEEcCCCCHHHHHHHHHHhh
Q 003349 455 SKVIFVATANRAQ---PIPPPLLDRME---VIELPGYTPEEKLRIAMRHL 498 (828)
Q Consensus 455 ~~viiI~TtN~~~---~l~~aLl~R~~---~i~~~~~~~ee~~~Il~~~l 498 (828)
..+.+|+.|.+.+ .+...+.+||. ++.+|..+..+-..+.+..+
T Consensus 170 ~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 170 APICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred CCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 2455666555543 56677889994 34556677788888888876
No 299
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.39 E-value=0.0076 Score=68.39 Aligned_cols=94 Identities=24% Similarity=0.380 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh-----CCCeEEEecCCcCch--hhh------ccCcccccccCcchHHHHHHhcC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGGVKDE--ADI------RGHRRTYIGSMPGRLIDGLKRVG 405 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l-----~~~~~~i~~~~~~~~--~~l------~g~~~~~vg~~~g~l~~~~~~~~ 405 (828)
.+.+++|+||+|+||||++..||..+ +.....++++..... ..+ .+.+ .+....+..+...+....
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp-~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP-VEVVYDPKELAKALEQLR 298 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc-eEccCCHHhHHHHHHHhC
Confidence 35689999999999999999888654 235666666654211 111 1111 122333445566665543
Q ss_pred CCCcEEEEecccccCCCCCCChHHHHHHhcC
Q 003349 406 VCNPVMLLDEIDKTGSDVRGDPASALLEVLD 436 (828)
Q Consensus 406 ~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld 436 (828)
...++|||.......+. .....|.++++
T Consensus 299 -~~DlVlIDt~G~~~~d~--~~~~~L~~ll~ 326 (424)
T PRK05703 299 -DCDVILIDTAGRSQRDK--RLIEELKALIE 326 (424)
T ss_pred -CCCEEEEeCCCCCCCCH--HHHHHHHHHHh
Confidence 24699999987654332 11344555554
No 300
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.39 E-value=0.00014 Score=67.40 Aligned_cols=30 Identities=43% Similarity=0.778 Sum_probs=25.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
.+++.||||+||||+|+.||+.++.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 478999999999999999999997665544
No 301
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.36 E-value=0.00029 Score=76.04 Aligned_cols=60 Identities=25% Similarity=0.512 Sum_probs=50.6
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC-CeEEE
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR-KFIRI 371 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~-~~~~i 371 (828)
.++++|++++++++++++............+++|.||+|+|||++++.|.+.+.. +.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 3479999999999999998877666677889999999999999999999998843 44444
No 302
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.34 E-value=0.00083 Score=81.36 Aligned_cols=154 Identities=23% Similarity=0.287 Sum_probs=100.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccC--cchHHHHHHhc------CCCCcEEEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM--PGRLIDGLKRV------GVCNPVMLL 413 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~--~g~l~~~~~~~------~~~~~vl~i 413 (828)
.++++||||+|||+.+...|+.++...+..+.+...+...+... +|.. ...+...+... ....-||++
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~----~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~ 434 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNK----LGNATSSHSIKGSKKKKGNRQSLNSDHFLILM 434 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhh----hhccccccchhhhhcccccccccccceeEEEE
Confidence 36899999999999999999999999999988776554433311 1111 11122222100 011229999
Q ss_pred ecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCce-EEEEcCCCCHHHHHH
Q 003349 414 DEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRM-EVIELPGYTPEEKLR 492 (828)
Q Consensus 414 DEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~-~~i~~~~~~~ee~~~ 492 (828)
||+|-+....+| .+..+-++... ...-+|+|+|....-....++|. ..+.|+.|+.+.+..
T Consensus 435 devD~~~~~dRg-~v~~l~~l~~k-----------------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ 496 (871)
T KOG1968|consen 435 DEVDGMFGEDRG-GVSKLSSLCKK-----------------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRS 496 (871)
T ss_pred eccccccchhhh-hHHHHHHHHHh-----------------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHh
Confidence 999998873322 24555555431 12357889998776555555554 468999999988776
Q ss_pred HHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHh
Q 003349 493 IAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 527 (828)
Q Consensus 493 Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~ 527 (828)
-+...+ ..+.+.+++..++.++..+
T Consensus 497 ri~si~----------~se~~ki~~~~l~~~s~~~ 521 (871)
T KOG1968|consen 497 RIMSIC----------KSEGIKISDDVLEEISKLS 521 (871)
T ss_pred hhhhhh----------cccceecCcHHHHHHHHhc
Confidence 555543 2456789999999999865
No 303
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.0045 Score=63.58 Aligned_cols=187 Identities=19% Similarity=0.243 Sum_probs=102.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE-ecC--CcCc-------hhhhccCcccccccC----cchHHHHHHhcC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRI-SLG--GVKD-------EADIRGHRRTYIGSM----PGRLIDGLKRVG 405 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i-~~~--~~~~-------~~~l~g~~~~~vg~~----~g~l~~~~~~~~ 405 (828)
...+.++|+.|+|||.++|++...++..-+.+ ... ...+ ..++...++..+-.. ...+.+.+.+..
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~ 130 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGK 130 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCC
Confidence 34678999999999999998888775433222 211 1111 111111111111100 011223333322
Q ss_pred CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCC----ccccCceEE-E
Q 003349 406 VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIP----PPLLDRMEV-I 480 (828)
Q Consensus 406 ~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~----~aLl~R~~~-i 480 (828)
.+.++++||.+-+..+. ...|.-+.+-.. .+.+ .-.++.++-..-...+. ..+..|+++ |
T Consensus 131 -r~v~l~vdEah~L~~~~----le~Lrll~nl~~--~~~~--------~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~ 195 (269)
T COG3267 131 -RPVVLMVDEAHDLNDSA----LEALRLLTNLEE--DSSK--------LLSIVLIGQPKLRPRLRLPVLRELEQRIDIRI 195 (269)
T ss_pred -CCeEEeehhHhhhChhH----HHHHHHHHhhcc--cccC--------ceeeeecCCcccchhhchHHHHhhhheEEEEE
Confidence 33589999999988765 555444333111 1111 11233333111111111 233459998 9
Q ss_pred EcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 481 ELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 481 ~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+++|++.++-...++.++.. .+ ....-++++++..+.....+ .-+.|+++|..|...+...
T Consensus 196 ~l~P~~~~~t~~yl~~~Le~-----a~--~~~~l~~~~a~~~i~~~sqg------~P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 196 ELPPLTEAETGLYLRHRLEG-----AG--LPEPLFSDDALLLIHEASQG------IPRLINNLATLALDAAYSA 256 (269)
T ss_pred ecCCcChHHHHHHHHHHHhc-----cC--CCcccCChhHHHHHHHHhcc------chHHHHHHHHHHHHHHHHc
Confidence 99999999888888877632 12 23456788888888765433 3378999998776665544
No 304
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.32 E-value=0.00062 Score=67.11 Aligned_cols=23 Identities=43% Similarity=0.813 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q 003349 342 VLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l 364 (828)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47899999999999999999888
No 305
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0061 Score=67.45 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=48.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh----C-CCeEEEecCCcCc--hhhh------ccCcccccccCcchHHHHHHhc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL----G-RKFIRISLGGVKD--EADI------RGHRRTYIGSMPGRLIDGLKRV 404 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l----~-~~~~~i~~~~~~~--~~~l------~g~~~~~vg~~~g~l~~~~~~~ 404 (828)
..+.+++|+||||+||||++..||..+ + .....+.+..+.. ..++ .|.+ ...-...+.+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~-~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP-VHAVKDGGDLQLALAEL 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCc-eEecCCcccHHHHHHHh
Confidence 356789999999999999999999764 2 2344555444321 1111 1211 11122233455555543
Q ss_pred CCCCcEEEEecccccCC
Q 003349 405 GVCNPVMLLDEIDKTGS 421 (828)
Q Consensus 405 ~~~~~vl~iDEid~l~~ 421 (828)
. ...+++||.......
T Consensus 214 ~-~~DlVLIDTaG~~~~ 229 (374)
T PRK14722 214 R-NKHMVLIDTIGMSQR 229 (374)
T ss_pred c-CCCEEEEcCCCCCcc
Confidence 3 236999999986653
No 306
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.29 E-value=0.00048 Score=69.83 Aligned_cols=89 Identities=26% Similarity=0.372 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcC----------
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVG---------- 405 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~---------- 405 (828)
.....++.||||||||++++.+...+ +..+..+..++.. ...+.. ..|.....+...+....
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~A-a~~L~~----~~~~~a~Ti~~~l~~~~~~~~~~~~~~ 91 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKA-AKELRE----KTGIEAQTIHSFLYRIPNGDDEGRPEL 91 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHH-HHHHHH----HHTS-EEEHHHHTTEECCEECCSSCC-
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHH-HHHHHH----hhCcchhhHHHHHhcCCcccccccccC
Confidence 34568889999999999999998777 3444545444321 111110 11111222333332221
Q ss_pred CCCcEEEEecccccCCCCCCChHHHHHHhcC
Q 003349 406 VCNPVMLLDEIDKTGSDVRGDPASALLEVLD 436 (828)
Q Consensus 406 ~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld 436 (828)
....++++||+..+.... +..|+..+.
T Consensus 92 ~~~~vliVDEasmv~~~~----~~~ll~~~~ 118 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQ----LARLLRLAK 118 (196)
T ss_dssp TSTSEEEESSGGG-BHHH----HHHHHHHS-
T ss_pred CcccEEEEecccccCHHH----HHHHHHHHH
Confidence 123499999999987543 555555554
No 307
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.25 E-value=0.0021 Score=70.02 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=83.7
Q ss_pred hhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccc
Q 003349 310 RLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTY 389 (828)
Q Consensus 310 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~ 389 (828)
.|.+-+-|.++.++.+.+++.............++|+|+.|+|||++++.+...+|.....+..+. ....+.+.
T Consensus 46 ~L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~--~~~~~~~~---- 119 (304)
T TIGR01613 46 FLLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASL--KMNEFQEH---- 119 (304)
T ss_pred HHHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcch--hhhhccCC----
Confidence 344434455667777888776655443344557889999999999999999999986543211111 00000000
Q ss_pred cccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCccccccccccc-CCeeecCCCcEEEEecCCCCC
Q 003349 390 IGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY-LNVPFDLSKVIFVATANRAQP 468 (828)
Q Consensus 390 vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~-~~~~~~~~~viiI~TtN~~~~ 468 (828)
.. .+ ..+. ...+++.||++.-.... .+.|-.+...... .....+ ....+.. .+.+|++||..-.
T Consensus 120 ---~f-~~-a~l~----gk~l~~~~E~~~~~~~~----~~~lK~lt~gd~i-~~~~k~k~~~~~~~-~~~~i~~tN~~P~ 184 (304)
T TIGR01613 120 ---RF-GL-ARLE----GKRAVIGDEVQKGYRDD----ESTFKSLTGGDTI-TARFKNKDPFEFTP-KFTLVQSTNHLPR 184 (304)
T ss_pred ---Cc-hh-hhhc----CCEEEEecCCCCCcccc----HHhhhhhhcCCeE-EeecccCCcEEEEE-eeEEEEEcCCCCc
Confidence 00 01 1111 12388999987532221 3444444431110 000111 1122222 4567778887643
Q ss_pred ---CCccccCceEEEEcCC
Q 003349 469 ---IPPPLLDRMEVIELPG 484 (828)
Q Consensus 469 ---l~~aLl~R~~~i~~~~ 484 (828)
.+.++.+|+-+|.|+.
T Consensus 185 ~~~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 185 IRGFDGGIKRRLRIIPFTK 203 (304)
T ss_pred cCCCChhheeeEEEEeccC
Confidence 4678999999888763
No 308
>PHA02624 large T antigen; Provisional
Probab=97.20 E-value=0.0013 Score=75.67 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEeccc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 417 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid 417 (828)
++...++|+||||||||+++.+|++.++.....++.....+...+ +.+.. ..+.+||++.
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL----------------~pl~D----~~~~l~dD~t 488 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFEL----------------GCAID----QFMVVFEDVK 488 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHh----------------hhhhh----ceEEEeeecc
Confidence 456689999999999999999999999655555553332211110 11111 2388999986
Q ss_pred ccCCCC----CC---ChHHHHHHhcCcc-cccccccccCCeeecCCCcEEEEecCCCCCCCccccCceE-EEEcCC
Q 003349 418 KTGSDV----RG---DPASALLEVLDPE-QNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VIELPG 484 (828)
Q Consensus 418 ~l~~~~----~~---~~~~~Ll~~ld~~-~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~-~i~~~~ 484 (828)
...-.. .| +...-|...||+. ....-..|...+..-+. -.|.|||. ..+|..+.-||. ++.|..
T Consensus 489 ~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~P--PlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 489 GQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFP--PGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCC--CeEEeecC-cccchhHHHHHHHhccccc
Confidence 543311 11 1134566667753 11100011111111111 35668885 568888888996 677754
No 309
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00034 Score=65.43 Aligned_cols=34 Identities=35% Similarity=0.672 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
..+|++|++|-|||||||++..+|..++.+++.+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 4568899999999999999999999988777654
No 310
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.14 E-value=0.00079 Score=68.41 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.++++||+|+||||++++++..+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999999988853
No 311
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=97.12 E-value=0.00034 Score=60.00 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHhhcH--HHHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 003349 485 YTPEEKLRIAMRHLIP--RVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALP 561 (828)
Q Consensus 485 ~~~ee~~~Il~~~l~~--~~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~ 561 (828)
++.++..+|+...+.+ ..+..++ ..+.++++++++|++ .|....|+|++++.|++.+
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~---i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i----------------- 60 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKG---IELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREI----------------- 60 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTT---EEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHH-----------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCC---CeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHH-----------------
Confidence 3567788888887653 2233344 469999999999998 6788999999999999987
Q ss_pred CCccccccCCccccccccCCCeeEE
Q 003349 562 SSKDVHRLGSPLLDNRLADGAEVEM 586 (828)
Q Consensus 562 ~~~~~~~~~~~~l~~~~~~~~~~~~ 586 (828)
..|+++.++.|.+.+++.|.|
T Consensus 61 ----~~~la~~il~~~~~~g~~v~v 81 (81)
T PF10431_consen 61 ----EPPLADAILSGKIKEGDTVRV 81 (81)
T ss_dssp ----HHHHHHHHHHSCSCTTCEEEE
T ss_pred ----HHHHHHHHHcCCCCCcCEeeC
Confidence 345666777788888776543
No 312
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.0023 Score=64.37 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+.|+.|||||||||+.|-||..+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHh
Confidence 468999999999999999999987
No 313
>PRK04296 thymidine kinase; Provisional
Probab=97.10 E-value=0.0019 Score=65.17 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRI 371 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i 371 (828)
+...+++||||+||||++..++..+ +...+.+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3467899999999999998888765 3444444
No 314
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.08 E-value=0.00053 Score=67.77 Aligned_cols=32 Identities=34% Similarity=0.710 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
++..++|+|||||||||+|+.+|+.++.+++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45689999999999999999999999877774
No 315
>PRK10536 hypothetical protein; Provisional
Probab=97.07 E-value=0.0032 Score=65.59 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999974
No 316
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.07 E-value=0.00071 Score=65.01 Aligned_cols=88 Identities=25% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccc-cCcchHHH--HHHhcCCCCcEEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIG-SMPGRLID--GLKRVGVCNPVMLLD 414 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg-~~~g~l~~--~~~~~~~~~~vl~iD 414 (828)
.+|..+.+.||+|+|||||+++++..+...-..+.+.+.... .|+- .+.|.... ..+..-..++++++|
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i--------~~~~~lS~G~~~rv~laral~~~p~illlD 95 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKI--------GYFEQLSGGEKMRLALAKLLLENPNLLLLD 95 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEE--------EEEccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 477899999999999999999999988666666665542110 1111 11222211 112222245699999
Q ss_pred cccccCCCCCCChHHHHHHhcC
Q 003349 415 EIDKTGSDVRGDPASALLEVLD 436 (828)
Q Consensus 415 Eid~l~~~~~~~~~~~Ll~~ld 436 (828)
|-..-.... ....+.+.+.
T Consensus 96 EP~~~LD~~---~~~~l~~~l~ 114 (144)
T cd03221 96 EPTNHLDLE---SIEALEEALK 114 (144)
T ss_pred CCccCCCHH---HHHHHHHHHH
Confidence 977543211 1445555554
No 317
>PRK08118 topology modulation protein; Reviewed
Probab=97.05 E-value=0.00052 Score=67.66 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=27.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.++++||||+||||+|+.|++.++.+++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 4789999999999999999999988877654
No 318
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.05 E-value=0.0011 Score=80.90 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCCCchhHHH-HHHHHHhCCCeEEEecCCcCc-hh---hhccCcccccccCcchHHHHHHhcCCCCcEEEE
Q 003349 339 RGPVLCFVGPPGVGKTSLA-SSIASALGRKFIRISLGGVKD-EA---DIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLL 413 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la-~~la~~l~~~~~~i~~~~~~~-~~---~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~i 413 (828)
....++++||||+|||++. -++-..+-..+..++++.-+. ++ .+..+.. |+-.+. .....-+....+.|+|.
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~-yy~~tg--~~~l~PK~~vK~lVLFc 1569 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETE-YYPNTG--VVRLYPKPVVKDLVLFC 1569 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhce-eeccCC--eEEEccCcchhheEEEe
Confidence 3456889999999999964 345555555666777665322 21 1221111 111110 00111111122349999
Q ss_pred ecccccCCCCCC---ChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-----CCCccccCceEEEEcCCC
Q 003349 414 DEIDKTGSDVRG---DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRMEVIELPGY 485 (828)
Q Consensus 414 DEid~l~~~~~~---~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-----~l~~aLl~R~~~i~~~~~ 485 (828)
|||+ +.....- +..-.|.++++. .+|........+...++++.+++|++. .++..|++|--++.+..|
T Consensus 1570 DeIn-Lp~~~~y~~~~vI~FlR~l~e~---QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~v~vf~~yp 1645 (3164)
T COG5245 1570 DEIN-LPYGFEYYPPTVIVFLRPLVER---QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKPVFVFCCYP 1645 (3164)
T ss_pred eccC-CccccccCCCceEEeeHHHHHh---cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCceEEEecCc
Confidence 9999 4433311 112223355553 234333333445567889999999985 455666666667888888
Q ss_pred CHHHHHHHHHHhhc
Q 003349 486 TPEEKLRIAMRHLI 499 (828)
Q Consensus 486 ~~ee~~~Il~~~l~ 499 (828)
+...+..|....+.
T Consensus 1646 e~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1646 ELASLRNIYEAVLM 1659 (3164)
T ss_pred chhhHHHHHHHHHH
Confidence 88888888776553
No 319
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.04 E-value=0.0071 Score=66.39 Aligned_cols=117 Identities=16% Similarity=0.317 Sum_probs=68.1
Q ss_pred EEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC---------------CCCcccc
Q 003349 410 VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---------------PIPPPLL 474 (828)
Q Consensus 410 vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~---------------~l~~aLl 474 (828)
|++|||+|++.++. ...+++.+.. + ++..+++||.+.++.. .....++
T Consensus 175 ViiIDdLDR~~~~~----i~~~l~~ik~-----~--------~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 175 VIIIDDLDRCSPEE----IVELLEAIKL-----L--------LDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred EEEEcchhcCCcHH----HHHHHHHHHH-----h--------cCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 89999999998765 5555555431 1 2356888998877541 1234556
Q ss_pred Cce-E-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCccccc----------CHHHHHHHHHHhh-hhhchHHHHHHHH
Q 003349 475 DRM-E-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI----------PEAMVKLVIQRYT-REAGVRNLERNLA 541 (828)
Q Consensus 475 ~R~-~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i----------~~~~l~~l~~~~~-~~~g~R~l~~~i~ 541 (828)
++| + .+.+|+++..+....+...+.... ...........+ ....+..+...+. .....|.++|.+.
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN 316 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNELLESLE-SETNESDDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFIN 316 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHHHHHhh-hccccccchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHH
Confidence 666 4 499999999888888777643211 111111110011 1233333444333 2356788888887
Q ss_pred HHH
Q 003349 542 ALA 544 (828)
Q Consensus 542 ~l~ 544 (828)
.+.
T Consensus 317 ~~~ 319 (325)
T PF07693_consen 317 SLS 319 (325)
T ss_pred HHH
Confidence 765
No 320
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.03 E-value=0.00045 Score=68.90 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=36.7
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCC---eEEEecCC
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK---FIRISLGG 375 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~---~~~i~~~~ 375 (828)
++|.++..+++...+. ......+.+++++|+||+|||++++.+...+..+ +..+++..
T Consensus 2 fvgR~~e~~~l~~~l~---~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD---AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp -TT-HHHHHHHHHTTG---GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCHHHHHHHHHHHHH---HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 5788888888888775 2223456789999999999999999888777433 55555554
No 321
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.00 E-value=0.0013 Score=63.78 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=26.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALG---RKFIRISLGG 375 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~ 375 (828)
+++++||||+|||+++..++..+. .+...+++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 368999999999999999998873 4455555443
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.99 E-value=0.0012 Score=65.54 Aligned_cols=38 Identities=32% Similarity=0.388 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.++..+.|.||+|+|||||++.++..+...-..+.+.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 60 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG 60 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC
Confidence 46789999999999999999999998866666666554
No 323
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.98 E-value=0.001 Score=65.31 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+......-..+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g 61 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG 61 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 47889999999999999999999998866566666554
No 324
>PF14516 AAA_35: AAA-like domain
Probab=96.95 E-value=0.028 Score=61.94 Aligned_cols=168 Identities=20% Similarity=0.220 Sum_probs=87.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCc-----hhhhc-----------cCcc---c----ccc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD-----EADIR-----------GHRR---T----YIG 391 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~-----~~~l~-----------g~~~---~----~vg 391 (828)
.+|..+.+.||..+|||++...+.+.+ +.....+++..... ..... +... . -.|
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 357789999999999999999888766 45566777665322 11000 0000 0 011
Q ss_pred cCcchHHHHHHh----cCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC
Q 003349 392 SMPGRLIDGLKR----VGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ 467 (828)
Q Consensus 392 ~~~g~l~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~ 467 (828)
........|.. ....+-|++|||||.+.... .....++..|...+..+-... ...+..+|++.....
T Consensus 109 -~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~--~~~~dF~~~LR~~~~~~~~~~------~~~~L~li~~~~t~~ 179 (331)
T PF14516_consen 109 -SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP--QIADDFFGLLRSWYEQRKNNP------IWQKLRLILAGSTED 179 (331)
T ss_pred -ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc--chHHHHHHHHHHHHHhcccCc------ccceEEEEEecCccc
Confidence 11122222322 12223389999999997522 113455555543322211110 112233333322221
Q ss_pred CCCccc-cCce---EEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhh
Q 003349 468 PIPPPL-LDRM---EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 528 (828)
Q Consensus 468 ~l~~aL-l~R~---~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~ 528 (828)
.+.... .+=| .-|.+++++.++...+++.+- ..+++..++.+...+.
T Consensus 180 ~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~--------------~~~~~~~~~~l~~~tg 230 (331)
T PF14516_consen 180 YIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG--------------LEFSQEQLEQLMDWTG 230 (331)
T ss_pred ccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh--------------ccCCHHHHHHHHHHHC
Confidence 111111 1223 358999999999888877652 3466666777665443
No 325
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.94 E-value=0.0028 Score=63.65 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
.+..+++.||+|+||||++++++..+......+.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~i 58 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITI 58 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE
Confidence 46789999999999999999999988654444443
No 326
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.94 E-value=0.0019 Score=67.77 Aligned_cols=31 Identities=42% Similarity=0.621 Sum_probs=27.2
Q ss_pred CCCCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 336 PDARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 336 ~~~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
+-.+|..++++||+||||||+++.+++.+..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3457888999999999999999999998855
No 327
>PRK07261 topology modulation protein; Provisional
Probab=96.93 E-value=0.0014 Score=64.98 Aligned_cols=30 Identities=20% Similarity=0.462 Sum_probs=26.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
.++++|+||+||||+|+.|+..++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~ 31 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHL 31 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEec
Confidence 378999999999999999999988776644
No 328
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.0011 Score=64.61 Aligned_cols=38 Identities=34% Similarity=0.558 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.++..+++.||+|+||||++++++..+......+.+.+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~ 60 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC
Confidence 46788999999999999999999998876666666665
No 329
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.90 E-value=0.0012 Score=67.70 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIA 361 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la 361 (828)
+..+||||+||+||||+|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4569999999999999999886
No 330
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0061 Score=67.16 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=52.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcC--chhhhccC-----cccccccCcchHHHHHHhcCC--
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVK--DEADIRGH-----RRTYIGSMPGRLIDGLKRVGV-- 406 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~--~~~~l~g~-----~~~~vg~~~g~l~~~~~~~~~-- 406 (828)
.+..++|+||+|+||||++..||..+ +.....++++... ...++... ..-++...+..+.+.+.....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34689999999999999999999877 3456666665543 22222211 011223445566666655432
Q ss_pred CCcEEEEecccccCC
Q 003349 407 CNPVMLLDEIDKTGS 421 (828)
Q Consensus 407 ~~~vl~iDEid~l~~ 421 (828)
...++|||-......
T Consensus 320 ~~DvVLIDTaGRs~k 334 (436)
T PRK11889 320 RVDYILIDTAGKNYR 334 (436)
T ss_pred CCCEEEEeCccccCc
Confidence 246999998877654
No 331
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.87 E-value=0.003 Score=68.62 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=64.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEeccc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 417 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid 417 (828)
++..-++|+|||.||||.++-.|-+.++..++ ++.+..+ .-..+-+.. ..|.+||++-
T Consensus 260 PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkVi--Sf~Ns~S----------------hFWLqPL~d----~Ki~llDDAT 317 (432)
T PF00519_consen 260 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVI--SFVNSKS----------------HFWLQPLAD----AKIALLDDAT 317 (432)
T ss_dssp TTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE---GGGTTS----------------CGGGGGGCT-----SSEEEEEE-
T ss_pred CcccEEEEECCCCCchhHHHHHHHHHhCCEEE--EecCCCC----------------cccccchhc----CcEEEEcCCc
Confidence 55667889999999999999999999965543 3222111 111111222 2388999976
Q ss_pred ccCCCCCCChHHH-HHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCcc---ccCceEEEEcCCC
Q 003349 418 KTGSDVRGDPASA-LLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPP---LLDRMEVIELPGY 485 (828)
Q Consensus 418 ~l~~~~~~~~~~~-Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~a---Ll~R~~~i~~~~~ 485 (828)
...=+- .+. |...||+.. .-.|.....++..+---++.|||..-.-++. |.+|+..++|+.+
T Consensus 318 ~~cW~Y----~D~ylRNaLDGN~--vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F~n~ 383 (432)
T PF00519_consen 318 YPCWDY----IDTYLRNALDGNP--VSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEFPNP 383 (432)
T ss_dssp HHHHHH----HHHHTHHHHCTSE--EEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE--S-
T ss_pred ccHHHH----HHHHHHhccCCCe--eeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEcCCc
Confidence 544211 222 446666532 2223222333333333566788876544444 4589999988753
No 332
>PRK00625 shikimate kinase; Provisional
Probab=96.86 E-value=0.00097 Score=66.06 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=27.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
+++|+|.||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5889999999999999999999998887654
No 333
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.86 E-value=0.0069 Score=64.26 Aligned_cols=165 Identities=17% Similarity=0.210 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchH
Q 003349 318 LVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRL 397 (828)
Q Consensus 318 ~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l 397 (828)
.+++.+.+........ .++.+.||+|.+|+||+++++..|...+..++.+..+...+.. .-...+
T Consensus 13 f~~ai~hi~ri~RvL~----~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~-----------~f~~dL 77 (268)
T PF12780_consen 13 FDEAIEHIARISRVLS----QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIK-----------DFKEDL 77 (268)
T ss_dssp -HHHHHHHHHHHHHHC----STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHc----CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHH-----------HHHHHH
Confidence 3555555554433221 3567899999999999999998888887777766544311111 011345
Q ss_pred HHHHHhcCCCC--cEEEEecccccCCCC-----------------CCChHHHHHHhcCccc-cccccc-------ccCCe
Q 003349 398 IDGLKRVGVCN--PVMLLDEIDKTGSDV-----------------RGDPASALLEVLDPEQ-NKTFND-------HYLNV 450 (828)
Q Consensus 398 ~~~~~~~~~~~--~vl~iDEid~l~~~~-----------------~~~~~~~Ll~~ld~~~-~~~~~~-------~~~~~ 450 (828)
..++.++...+ .+++|++-+-..... ..+....+.+.+.+.. ..++.+ .+..
T Consensus 78 k~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~- 156 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIE- 156 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHH-
T ss_pred HHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHH-
Confidence 56666555433 367777644332211 1122333332222110 000000 0000
Q ss_pred eecCCCcEEEEecCCCC-CC------CccccCceEEEEcCCCCHHHHHHHHHHhhc
Q 003349 451 PFDLSKVIFVATANRAQ-PI------PPPLLDRMEVIELPGYTPEEKLRIAMRHLI 499 (828)
Q Consensus 451 ~~~~~~viiI~TtN~~~-~l------~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~ 499 (828)
.+ ..|.-||.+.++.. .+ -|+|.+++.+..|.+-+.+.+..+...++.
T Consensus 157 rv-r~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~ 211 (268)
T PF12780_consen 157 RV-RKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLS 211 (268)
T ss_dssp HH-CCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCC
T ss_pred HH-HhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHH
Confidence 01 23444555544433 23 477888889999999999999999998874
No 334
>PRK03839 putative kinase; Provisional
Probab=96.85 E-value=0.00095 Score=66.68 Aligned_cols=30 Identities=33% Similarity=0.801 Sum_probs=26.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
.++|.|+||+||||+++.+|+.++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 478999999999999999999998877543
No 335
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.84 E-value=0.00099 Score=66.26 Aligned_cols=34 Identities=24% Similarity=0.542 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
+..++|.|+||+||||+|+.+++.++.+++.+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 5679999999999999999999998776665543
No 336
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.84 E-value=0.0012 Score=62.99 Aligned_cols=30 Identities=43% Similarity=0.785 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
.++++||||+||||+|+.+++.++ ...++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~--~~~i~~ 30 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG--AVVISQ 30 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST--EEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC--CEEEeH
Confidence 378999999999999999999987 444543
No 337
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.82 E-value=0.046 Score=62.60 Aligned_cols=37 Identities=35% Similarity=0.651 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh----C-CCeEEEecCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL----G-RKFIRISLGG 375 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l----~-~~~~~i~~~~ 375 (828)
.+.+++|+||+|+||||++..||..+ + ..+..+.++.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 46789999999999999999999876 2 2455555544
No 338
>PRK13947 shikimate kinase; Provisional
Probab=96.80 E-value=0.0011 Score=65.46 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=27.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
+++++|+|||||||+++.+|+.++.+++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5889999999999999999999998887543
No 339
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.80 E-value=0.00096 Score=72.75 Aligned_cols=38 Identities=34% Similarity=0.487 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+||||||+.|+||.......+.|.+.+
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G 66 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDG 66 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 46778999999999999999999999888777777766
No 340
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.78 E-value=0.0029 Score=70.00 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=43.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC--eEEEecCCcCchhhhccC----cccccccCcchHHHHHHhcCC-CCcEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK--FIRISLGGVKDEADIRGH----RRTYIGSMPGRLIDGLKRVGV-CNPVM 411 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~--~~~i~~~~~~~~~~l~g~----~~~~vg~~~g~l~~~~~~~~~-~~~vl 411 (828)
++..++++||+|+||||+++++...+..+ ...+.+..... ....+. ...-+|.....+.+.++.+-. .+.++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E-~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i 199 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE-YVHRNKRSLINQREVGLDTLSFANALRAALREDPDVI 199 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh-hhccCccceEEccccCCCCcCHHHHHHHhhccCCCEE
Confidence 35679999999999999999999877532 22222222111 000010 011133322334444444332 34599
Q ss_pred EEeccc
Q 003349 412 LLDEID 417 (828)
Q Consensus 412 ~iDEid 417 (828)
++||+.
T Consensus 200 ~vgEir 205 (343)
T TIGR01420 200 LIGEMR 205 (343)
T ss_pred EEeCCC
Confidence 999985
No 341
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.028 Score=64.47 Aligned_cols=83 Identities=23% Similarity=0.361 Sum_probs=47.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC-----CCeEEEecCCcCc--hhhhccCccc-----ccccCcchHHHHHHhcC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKD--EADIRGHRRT-----YIGSMPGRLIDGLKRVG 405 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~-----~~~~~i~~~~~~~--~~~l~g~~~~-----~vg~~~g~l~~~~~~~~ 405 (828)
..+.+++|+||+|+||||++..|+..+- ..+..++.+.+.. ...+...... ........+...+....
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 3577899999999999999999987652 3444555443321 1111111000 01112234555555443
Q ss_pred CCCcEEEEecccccCC
Q 003349 406 VCNPVMLLDEIDKTGS 421 (828)
Q Consensus 406 ~~~~vl~iDEid~l~~ 421 (828)
...+||||.......
T Consensus 428 -~~DLVLIDTaG~s~~ 442 (559)
T PRK12727 428 -DYKLVLIDTAGMGQR 442 (559)
T ss_pred -cCCEEEecCCCcchh
Confidence 245999999877543
No 342
>PRK13695 putative NTPase; Provisional
Probab=96.77 E-value=0.0056 Score=60.74 Aligned_cols=23 Identities=52% Similarity=0.829 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q 003349 342 VLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l 364 (828)
.++|+|+||+||||+++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988765
No 343
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.75 E-value=0.0018 Score=64.28 Aligned_cols=38 Identities=37% Similarity=0.572 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||++.|+..+......+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g 63 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 46788999999999999999999998865555555544
No 344
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.74 E-value=0.0013 Score=63.56 Aligned_cols=30 Identities=33% Similarity=0.624 Sum_probs=26.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
+++|+|+||+||||+++.+|+.++.+++..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~ 30 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL 30 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 378999999999999999999998877644
No 345
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.74 E-value=0.0089 Score=67.41 Aligned_cols=119 Identities=22% Similarity=0.267 Sum_probs=72.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhc-CCCCcEEEEecccccC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV-GVCNPVMLLDEIDKTG 420 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~-~~~~~vl~iDEid~l~ 420 (828)
.++++||-+|||||+++.+.+.+......+++.+.... ..........+... ......+|||||.++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~-----------~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~ 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLD-----------RIELLDLLRAYIELKEREKSYIFLDEIQNVP 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcc-----------hhhHHHHHHHHHHhhccCCceEEEecccCch
Confidence 89999999999999999888887555444544432210 00001112222211 1134589999999875
Q ss_pred CCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC---CCCccccCceEEEEcCCCCHHHHHH
Q 003349 421 SDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRMEVIELPGYTPEEKLR 492 (828)
Q Consensus 421 ~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~---~l~~aLl~R~~~i~~~~~~~ee~~~ 492 (828)
.= ...+-.+.|... . =++|.++|..- ...+.|..|...+.+.|+|-.|-..
T Consensus 108 ~W-----~~~lk~l~d~~~--------------~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 DW-----ERALKYLYDRGN--------------L--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred hH-----HHHHHHHHcccc--------------c--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 41 344444444221 0 14555555442 6677788898889999999988765
No 346
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.74 E-value=0.0038 Score=72.33 Aligned_cols=37 Identities=35% Similarity=0.377 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 374 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~ 374 (828)
.+|..+++.||+|||||+|.|+||..+..--+.+.+.
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P 453 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP 453 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC
Confidence 4678999999999999999999999985444444443
No 347
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.73 E-value=0.0051 Score=79.09 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
++++|.+..++.+...+.. .......+.++||+|+||||+|+++++.+..+
T Consensus 184 ~~~vG~~~~l~~l~~lL~l----~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHL----ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred ccccchHHHHHHHHHHHcc----ccCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 3477998888887766532 12345689999999999999999998877544
No 348
>PF13245 AAA_19: Part of AAA domain
Probab=96.73 E-value=0.0023 Score=54.04 Aligned_cols=25 Identities=52% Similarity=0.923 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCchh-HHHHHHHHHh
Q 003349 340 GPVLCFVGPPGVGKT-SLASSIASAL 364 (828)
Q Consensus 340 ~~~lLL~GppGtGKT-~la~~la~~l 364 (828)
.+.+++.|||||||| +++..++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345667999999999 5566666665
No 349
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0019 Score=63.96 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||++.++..+...-+.+.+.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g 63 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG 63 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC
Confidence 47889999999999999999999998865555555544
No 350
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0014 Score=64.00 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=28.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.++.|+|++|+||||+.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 45789999999999999999999999998654
No 351
>PRK14530 adenylate kinase; Provisional
Probab=96.68 E-value=0.0016 Score=67.09 Aligned_cols=30 Identities=30% Similarity=0.666 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
++.++|.||||+||||+++.||+.++.+++
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 457899999999999999999999986555
No 352
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.67 E-value=0.0048 Score=67.21 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.+.++++.||+|+||||++++++..+......+.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ 176 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIIT 176 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEE
Confidence 5678999999999999999999998855443333
No 353
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.65 E-value=0.0067 Score=64.45 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
....+++.||+|+||||+++++...+..
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 3456899999999999999999877753
No 354
>PRK13949 shikimate kinase; Provisional
Probab=96.64 E-value=0.0016 Score=64.32 Aligned_cols=31 Identities=39% Similarity=0.648 Sum_probs=27.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.++|+||||+||||+++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 4889999999999999999999987776543
No 355
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.62 E-value=0.0089 Score=60.45 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=55.9
Q ss_pred eEEEEcCCCCchhHHHHHH-HH-Hh--CCCeEEEecCCcCch--hhhccCccc--c------cccCcchHHHHHHhcCCC
Q 003349 342 VLCFVGPPGVGKTSLASSI-AS-AL--GRKFIRISLGGVKDE--ADIRGHRRT--Y------IGSMPGRLIDGLKRVGVC 407 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~l-a~-~l--~~~~~~i~~~~~~~~--~~l~g~~~~--~------vg~~~g~l~~~~~~~~~~ 407 (828)
+.+++|.||+|||..|-.. .. .+ |++++. ++.++... ....+.... + .+.....-.......+ .
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLP-K 79 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSG-T
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccC-C
Confidence 4689999999999987544 32 22 455443 54433211 010000000 0 0000011112222222 4
Q ss_pred CcEEEEecccccCCCCCCC--hHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceE-EEEc
Q 003349 408 NPVMLLDEIDKTGSDVRGD--PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VIEL 482 (828)
Q Consensus 408 ~~vl~iDEid~l~~~~~~~--~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~-~i~~ 482 (828)
+++++|||+....+.+... .....++.|.... ..+.-|+++|-.+..+++.+++..+ .+.+
T Consensus 80 ~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hR--------------h~g~diiliTQ~~~~id~~ir~lve~~~~~ 143 (193)
T PF05707_consen 80 GSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHR--------------HYGWDIILITQSPSQIDKFIRDLVEYHYHC 143 (193)
T ss_dssp T-EEEETTGGGTSB---T-T----HHHHGGGGCC--------------CTT-EEEEEES-GGGB-HHHHCCEEEEEEE
T ss_pred CcEEEEECChhhcCCCccccccchHHHHHHHHhC--------------cCCcEEEEEeCCHHHHhHHHHHHHheEEEE
Confidence 6699999999988876431 2233446554211 1245677888888899999988776 3444
No 356
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.60 E-value=0.0078 Score=64.98 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=46.7
Q ss_pred hcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc
Q 003349 311 LDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 376 (828)
Q Consensus 311 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~ 376 (828)
+...+.+.+..++.+...+-. ....-+.++.++|-.|||||.+.+++-+.++.+.+.+++-+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~---~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGN---NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred cccCccchHHHHHHHHHHhCC---CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 445667777777777665531 111235567899999999999999999999988888876553
No 357
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.60 E-value=0.0014 Score=68.31 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+++.||+|||||||.|++++.+...-+.+.+.+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g 63 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG 63 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 46789999999999999999999999987777776665
No 358
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.002 Score=61.43 Aligned_cols=29 Identities=41% Similarity=0.716 Sum_probs=25.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.+-+.|||||||||+++.||+.+|.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 35689999999999999999999988774
No 359
>PRK08233 hypothetical protein; Provisional
Probab=96.59 E-value=0.0046 Score=61.60 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
+..+.+.|+||+||||+|+.|+..++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999999985
No 360
>PRK14532 adenylate kinase; Provisional
Probab=96.59 E-value=0.0018 Score=65.12 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+++|.||||+||||+++.||+.++..++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i 29 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL 29 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4789999999999999999999875544
No 361
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.59 E-value=0.0017 Score=64.86 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=26.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.++++||||+||||+|+.||+.++. ..++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~--~~is~~d 32 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGF--THLSAGD 32 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCC--eEEECCh
Confidence 3789999999999999999999864 4455443
No 362
>PRK06696 uridine kinase; Validated
Probab=96.59 E-value=0.0045 Score=64.18 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD 378 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~ 378 (828)
.+..|.+.|+||+||||+|+.|+..+ +.+.+.+.+.++..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 45588899999999999999999999 55666666666543
No 363
>PRK06762 hypothetical protein; Provisional
Probab=96.58 E-value=0.0024 Score=62.84 Aligned_cols=32 Identities=31% Similarity=0.560 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
..++|+|+||+||||+|+.+++.++.....++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 46889999999999999999999865555554
No 364
>PHA01747 putative ATP-dependent protease
Probab=96.58 E-value=0.0068 Score=65.34 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcc-cccccCcchHHHHHHhcCCCCcEEEEeccc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRR-TYIGSMPGRLIDGLKRVGVCNPVMLLDEID 417 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~-~~vg~~~g~l~~~~~~~~~~~~vl~iDEid 417 (828)
++-+++=.||.|||||++-+.+....+... .++..+...+....+ +-+|... ...+++||||.
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fsp~~i----SGG~~TvA~LFyN~~t~~~GLVg------------~~D~VaFDEVa 252 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELFNFRY----YTEPPTYANLVYDAKTNALGLVF------------LSNGLIFDEIQ 252 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcCCcee----eCCCCchHHheEecCCCceeEEe------------eccEEEEEccc
Confidence 445788889999999999998876543222 334444444332211 1111110 12389999999
Q ss_pred ccCCCCCCChHHHHHHhcC
Q 003349 418 KTGSDVRGDPASALLEVLD 436 (828)
Q Consensus 418 ~l~~~~~~~~~~~Ll~~ld 436 (828)
....+...+..+.|..-|+
T Consensus 253 ~i~f~~~kdiv~IMKdYMe 271 (425)
T PHA01747 253 TWKDSNMRAINSTLSTGME 271 (425)
T ss_pred cccCCCHHHHHHHHHHHhh
Confidence 9886541223444444454
No 365
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.55 E-value=0.0039 Score=61.43 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
.+|..+.+.||+|+|||||++.++..+...-..+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 467889999999999999999999987554444443
No 366
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.0019 Score=70.14 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
..|..+.|.||+||||||+.|.||......-+.+.+++
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 46778999999999999999999999888878777766
No 367
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.53 E-value=0.0051 Score=65.71 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=43.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC-eEEEecCCcCchhhhccCccc-ccc-cCcchHHHHHHhcCCC-CcEEEEe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK-FIRISLGGVKDEADIRGHRRT-YIG-SMPGRLIDGLKRVGVC-NPVMLLD 414 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~-~~~i~~~~~~~~~~l~g~~~~-~vg-~~~g~l~~~~~~~~~~-~~vl~iD 414 (828)
.+.++++.||+|+||||+++++...+... ...+.+.+. .+..+.+.... +.. .....+.+.++.+-.. +.+++++
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~-~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiig 204 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDP-PELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIG 204 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESS-S-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEES
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccc-cceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccc
Confidence 35679999999999999999999988655 333333321 11222211101 111 1122344455444333 3499999
Q ss_pred cccc
Q 003349 415 EIDK 418 (828)
Q Consensus 415 Eid~ 418 (828)
||..
T Consensus 205 EiR~ 208 (270)
T PF00437_consen 205 EIRD 208 (270)
T ss_dssp CE-S
T ss_pred ccCC
Confidence 9975
No 368
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.52 E-value=0.017 Score=63.03 Aligned_cols=34 Identities=32% Similarity=0.632 Sum_probs=30.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
.++..+.|+|+||||||++++.+|+.++.+++.+
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 4566899999999999999999999999998843
No 369
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.51 E-value=0.0027 Score=63.65 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
.+.+++.||||+||||+++.+++.++...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~ 31 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTH 31 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 45788999999999999999999986543
No 370
>PRK06217 hypothetical protein; Validated
Probab=96.51 E-value=0.0024 Score=64.05 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.3
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
.|++.|+||+||||++++|++.++.+++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~ 32 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDT 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEc
Confidence 488999999999999999999998776543
No 371
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.51 E-value=0.0061 Score=67.43 Aligned_cols=30 Identities=40% Similarity=0.572 Sum_probs=26.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
.+|..++++||||+|||++++.+++.+...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 577889999999999999999999987543
No 372
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.50 E-value=0.0053 Score=65.94 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=25.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
..+.++.|+|+-|+|||.|.-.....+..
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 35568999999999999999999988854
No 373
>PRK14531 adenylate kinase; Provisional
Probab=96.50 E-value=0.0026 Score=63.71 Aligned_cols=29 Identities=38% Similarity=0.738 Sum_probs=25.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.++++||||+||||+++.||+.++..++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 58899999999999999999999766543
No 374
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.48 E-value=0.0046 Score=61.73 Aligned_cols=38 Identities=32% Similarity=0.532 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..++|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g 60 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 47789999999999999999999998765555555443
No 375
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.48 E-value=0.0024 Score=61.15 Aligned_cols=30 Identities=30% Similarity=0.629 Sum_probs=26.5
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 343 LCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
+++.|+||+||||+|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999988776543
No 376
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.46 E-value=0.0023 Score=61.75 Aligned_cols=26 Identities=31% Similarity=0.677 Sum_probs=23.0
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 343 LCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
++|+|+||+||||+|+.+++.++..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~ 27 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPF 27 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEE
Confidence 68999999999999999999876544
No 377
>PRK13948 shikimate kinase; Provisional
Probab=96.46 E-value=0.0032 Score=62.92 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.++.+++|+|++|+||||+++.+|+.++.+++..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 35568999999999999999999999999888554
No 378
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.031 Score=67.04 Aligned_cols=82 Identities=26% Similarity=0.379 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh----C-CCeEEEecCCcCc--hh------hhccCcccccccCcchHHHHHHhcC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL----G-RKFIRISLGGVKD--EA------DIRGHRRTYIGSMPGRLIDGLKRVG 405 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l----~-~~~~~i~~~~~~~--~~------~l~g~~~~~vg~~~g~l~~~~~~~~ 405 (828)
.+.+++|+||+|+||||++..||..+ + .....+..+.+.. .. .+.+.+ .++...+..+.+.+....
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp-v~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVP-VHAVKDAADLRFALAALG 262 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC-ccccCCHHHHHHHHHHhc
Confidence 45689999999999999999999766 2 2344455444321 11 112211 223345556667776654
Q ss_pred CCCcEEEEecccccCCC
Q 003349 406 VCNPVMLLDEIDKTGSD 422 (828)
Q Consensus 406 ~~~~vl~iDEid~l~~~ 422 (828)
. ..++|||=....+.+
T Consensus 263 ~-~D~VLIDTAGRs~~d 278 (767)
T PRK14723 263 D-KHLVLIDTVGMSQRD 278 (767)
T ss_pred C-CCEEEEeCCCCCccC
Confidence 3 359999988766543
No 379
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.44 E-value=0.0044 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.6
Q ss_pred EEEEcCCCCchhHHHHHHHHHh
Q 003349 343 LCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l 364 (828)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 380
>PTZ00202 tuzin; Provisional
Probab=96.43 E-value=0.022 Score=63.34 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=44.0
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
++.|.+.....+...+..... ..+..+.|+||+|||||++++.+...++...+.++..+
T Consensus 263 ~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 467888888888777653222 12347889999999999999999998886666666553
No 381
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.41 E-value=0.0043 Score=58.28 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=26.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
.++..++|.|+.|+||||+++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 456789999999999999999999998753
No 382
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.003 Score=62.84 Aligned_cols=27 Identities=41% Similarity=0.773 Sum_probs=23.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
.+++.||||+||||+|+.||+.++.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 478999999999999999999965433
No 383
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.0024 Score=61.75 Aligned_cols=29 Identities=38% Similarity=0.759 Sum_probs=24.6
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
.++++|.|||||||+++.|+ .++.....+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l 30 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIEL 30 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeH
Confidence 47899999999999999999 777665543
No 384
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.36 E-value=0.0025 Score=62.41 Aligned_cols=26 Identities=42% Similarity=0.797 Sum_probs=22.6
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 343 LCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
++++||||+||||+++.+++.++..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~ 26 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKF 26 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 46899999999999999999987443
No 385
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.36 E-value=0.0038 Score=61.88 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
...++|+||+|+||||+++.+|+.++.+++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 346889999999999999999999987766543
No 386
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.34 E-value=0.0085 Score=60.16 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
++..+.|+||||+|||+|++.+.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456788999999999999999988753
No 387
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.34 E-value=0.0036 Score=68.89 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=26.3
Q ss_pred CCCCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 336 PDARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 336 ~~~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
|-.+|...|++||||||||+|++.|++....
T Consensus 165 PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 165 PIGKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 3356778999999999999999999987743
No 388
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.33 E-value=0.003 Score=63.71 Aligned_cols=27 Identities=37% Similarity=0.693 Sum_probs=23.9
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 343 LCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
++++||||+||||+++.||+.++..++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i 28 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI 28 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 789999999999999999999875544
No 389
>PRK14527 adenylate kinase; Provisional
Probab=96.32 E-value=0.0032 Score=63.59 Aligned_cols=32 Identities=41% Similarity=0.750 Sum_probs=27.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
..+..++++||||+||||+|+.+|+.++...+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 35678999999999999999999998875443
No 390
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.0034 Score=64.04 Aligned_cols=39 Identities=36% Similarity=0.423 Sum_probs=34.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 376 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~ 376 (828)
.+|..+.++||+|||||||+++++.......+.+.+.+.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~ 69 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK 69 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCc
Confidence 478899999999999999999999998888888877763
No 391
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.28 E-value=0.0036 Score=62.71 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|.++.++||+|+||||+.|+|...-...-+.+.+.+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 47889999999999999999999987666666666655
No 392
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.27 E-value=0.018 Score=63.11 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
.+.+++++||+|+||||+++++...+......+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ 191 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLI 191 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEE
Confidence 346799999999999999999999886543333
No 393
>PF13479 AAA_24: AAA domain
Probab=96.27 E-value=0.0092 Score=61.37 Aligned_cols=75 Identities=23% Similarity=0.245 Sum_probs=40.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCch-hhhccCcccccccCcchHHHHHHh---cCCCCcEEEEec
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDE-ADIRGHRRTYIGSMPGRLIDGLKR---VGVCNPVMLLDE 415 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~-~~l~g~~~~~vg~~~g~l~~~~~~---~~~~~~vl~iDE 415 (828)
+..+++|||||+|||++|..+ .....+++..-... ..+.....-.+ .....+.+.+.. ......+|+||-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~-----~k~l~id~E~g~~~~~~~~~~~~i~i-~s~~~~~~~~~~l~~~~~~y~tiVIDs 76 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL-----PKPLFIDTENGSDSLKFLDDGDVIPI-TSWEDFLEALDELEEDEADYDTIVIDS 76 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC-----CCeEEEEeCCCccchhhhcCCCeeCc-CCHHHHHHHHHHHHhccCCCCEEEEEC
Confidence 346899999999999998877 34445565443111 11111110001 122344454422 223344999999
Q ss_pred ccccC
Q 003349 416 IDKTG 420 (828)
Q Consensus 416 id~l~ 420 (828)
++.+.
T Consensus 77 is~~~ 81 (213)
T PF13479_consen 77 ISWLE 81 (213)
T ss_pred HHHHH
Confidence 88763
No 394
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.26 E-value=0.0067 Score=64.46 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=28.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.++++.||||+||||+.++++..+......+.+.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g 146 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG 146 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC
Confidence 58999999999999999999999866554444433
No 395
>PRK06547 hypothetical protein; Provisional
Probab=96.24 E-value=0.0043 Score=61.40 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
....+++.|+||+||||+++.+++.++.+++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~ 44 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLV 44 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 4457888999999999999999999876544
No 396
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.23 E-value=0.013 Score=63.88 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l 364 (828)
+.+++++|++|+||||++++++..+
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999887
No 397
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.021 Score=56.05 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||.|+|||||.|.+|..+......+.+.+
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~ 63 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC
Confidence 46778889999999999999999999977777666553
No 398
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.22 E-value=0.0079 Score=61.55 Aligned_cols=38 Identities=37% Similarity=0.676 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 375 (828)
+++..++++||||+|||+++..++... +.+...+++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 567889999999999999999988654 44566666654
No 399
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.21 E-value=0.09 Score=59.73 Aligned_cols=81 Identities=21% Similarity=0.309 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchh--hhc------cCcccccccCcc----hHHHHHHh
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEA--DIR------GHRRTYIGSMPG----RLIDGLKR 403 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~--~l~------g~~~~~vg~~~g----~l~~~~~~ 403 (828)
++.+++|+|+||+||||++..+|..+ +.....++++.+.... ++. +.+ -+...... .+.+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp-~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP-FYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc-EEecCCccCHHHHHHHHHHH
Confidence 45689999999999999999999877 4456666666543311 111 111 11111111 13344444
Q ss_pred cCCCCcEEEEecccccCC
Q 003349 404 VGVCNPVMLLDEIDKTGS 421 (828)
Q Consensus 404 ~~~~~~vl~iDEid~l~~ 421 (828)
+.. ..++++|.....+.
T Consensus 173 ~~~-~DvVIIDTAGr~~~ 189 (437)
T PRK00771 173 FKK-ADVIIVDTAGRHAL 189 (437)
T ss_pred hhc-CCEEEEECCCcccc
Confidence 433 36999999877654
No 400
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.20 E-value=0.0048 Score=64.02 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
..++|.||||+||||+|+.||+.++.+++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~i 35 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHI 35 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 35889999999999999999999876554
No 401
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.20 E-value=0.0056 Score=61.38 Aligned_cols=31 Identities=42% Similarity=0.673 Sum_probs=25.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.++++||+|||||.+|-.+|+.+|.+.+..+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~D 33 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLD 33 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEec
Confidence 5789999999999999999999999988776
No 402
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.20 E-value=0.0097 Score=60.92 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 376 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~ 376 (828)
..|..+.|.|++|+|||||.+.||..+...-+.+.+.+.
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~ 89 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK 89 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce
Confidence 467889999999999999999999999887777776653
No 403
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.18 E-value=0.005 Score=60.86 Aligned_cols=31 Identities=39% Similarity=0.690 Sum_probs=27.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.++|+|+||+||||+++.+|+.++.+++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5789999999999999999999998887543
No 404
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.014 Score=68.29 Aligned_cols=38 Identities=37% Similarity=0.548 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|.++.|+||+|.||||+|..+-+.+...-++|.+++
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG 529 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDG 529 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 46779999999999999999999999976666665444
No 405
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.18 E-value=0.038 Score=57.33 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=72.9
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe-cCCcCchhhhcc-CcccccccCc-----c-h-------HHHHHHhcC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRIS-LGGVKDEADIRG-HRRTYIGSMP-----G-R-------LIDGLKRVG 405 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~-~~~~~~~~~l~g-~~~~~vg~~~-----g-~-------l~~~~~~~~ 405 (828)
-.+++.|++|+|||+++..+-..+...+..+- ++.... ....+ -++.++.... . . +.+......
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n-~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYN-NEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCc-hhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 36889999999999999999887755442222 112111 11110 0111111110 0 0 111112111
Q ss_pred C----CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEE-E
Q 003349 406 V----CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEV-I 480 (828)
Q Consensus 406 ~----~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~-i 480 (828)
. ...+++||++..- ... ...+.+++..+ + ..++.+|.++-....+|+.++.-++. +
T Consensus 93 ~~k~~~~~LiIlDD~~~~-~~k----~~~l~~~~~~g-----------R---H~~is~i~l~Q~~~~lp~~iR~n~~y~i 153 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK-KLK----SKILRQFFNNG-----------R---HYNISIIFLSQSYFHLPPNIRSNIDYFI 153 (241)
T ss_pred ccCCCCCeEEEEeCCCCc-hhh----hHHHHHHHhcc-----------c---ccceEEEEEeeecccCCHHHhhcceEEE
Confidence 1 1238999997541 111 23455555421 1 23567888877788999998777764 4
Q ss_pred EcCCCCHHHHHHHHHHh
Q 003349 481 ELPGYTPEEKLRIAMRH 497 (828)
Q Consensus 481 ~~~~~~~ee~~~Il~~~ 497 (828)
-++ .+..++..|++.+
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 454 5777776666655
No 406
>PRK14528 adenylate kinase; Provisional
Probab=96.17 E-value=0.0048 Score=61.98 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=24.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.+++.||||+||||+++.+++.++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~i 30 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQI 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 5789999999999999999999976654
No 407
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.093 Score=58.77 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh----CCCeEEEecCCc
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLGGV 376 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l----~~~~~~i~~~~~ 376 (828)
+..++|+||+|+||||++..+|..+ +.....++++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~ 263 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY 263 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence 4578899999999999999999754 334555555543
No 408
>PRK04040 adenylate kinase; Provisional
Probab=96.16 E-value=0.0055 Score=61.66 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
..++++|+|||||||+++.+++.+...+..++++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~ 37 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGD 37 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecch
Confidence 46889999999999999999999842333344433
No 409
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.16 E-value=0.0038 Score=58.05 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=20.7
Q ss_pred EEEEcCCCCchhHHHHHHHHHh
Q 003349 343 LCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l 364 (828)
|+|.|+||+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999987
No 410
>PRK13946 shikimate kinase; Provisional
Probab=96.14 E-value=0.0048 Score=61.91 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
...++|+|+|||||||+++.+|+.++.+++..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 357899999999999999999999998877544
No 411
>PRK02496 adk adenylate kinase; Provisional
Probab=96.14 E-value=0.0049 Score=61.74 Aligned_cols=28 Identities=43% Similarity=0.659 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.+++.||||+||||+++.||+.++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3789999999999999999999876554
No 412
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.13 E-value=0.13 Score=57.58 Aligned_cols=121 Identities=19% Similarity=0.158 Sum_probs=73.8
Q ss_pred HHHHHhcCCCCcEEEEecccccCCCC----CCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC------
Q 003349 398 IDGLKRVGVCNPVMLLDEIDKTGSDV----RGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ------ 467 (828)
Q Consensus 398 ~~~~~~~~~~~~vl~iDEid~l~~~~----~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~------ 467 (828)
...++.+.+..-+|+|||++.+..-. +....+.|++++|...... ..++.|++|..+..
T Consensus 230 ~~~lr~aGy~GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~-----------~~gL~~~~~gTPef~eD~rr 298 (416)
T PF10923_consen 230 ARFLRDAGYKGLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGR-----------APGLYFVFAGTPEFFEDGRR 298 (416)
T ss_pred HHHHHHcCCCceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCC-----------CCceEEEEeeCHHHhhCccc
Confidence 34455566655699999999875422 3334788999988543222 34455555544321
Q ss_pred ----------CC------CccccCce-EEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhh
Q 003349 468 ----------PI------PPPLLDRM-EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 530 (828)
Q Consensus 468 ----------~l------~~aLl~R~-~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~ 530 (828)
.| ++.+.+-. .+|.+++++.+++..++.+. ..-.-..+ .....++++.+..+++.+.+.
T Consensus 299 Gv~sY~AL~~RL~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~kl-r~i~a~~~---~~~~~v~d~~l~~~~~~~~~r 374 (416)
T PF10923_consen 299 GVYSYEALAQRLAEEFFADDGFDNLRAPVIRLQPLTPEELLELLEKL-RDIYAEAY---GYESRVDDEELKAFAQHVAGR 374 (416)
T ss_pred cccccHHHHHHHhccccccccccCccCceecCCCCCHHHHHHHHHHH-HHHHHhhC---CCCCCCCHHHHHHHHHHHHhc
Confidence 11 12222222 26899999999998777664 22222222 233789999999999877776
Q ss_pred hch
Q 003349 531 AGV 533 (828)
Q Consensus 531 ~g~ 533 (828)
.|.
T Consensus 375 ~G~ 377 (416)
T PF10923_consen 375 LGG 377 (416)
T ss_pred cCc
Confidence 554
No 413
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.13 E-value=0.0073 Score=67.06 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
..++++||+|+||||+++++...+.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998873
No 414
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.12 E-value=0.067 Score=58.40 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
++..++|+||||+||||++..+|..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 567899999999999999999998873
No 415
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.10 E-value=0.012 Score=62.17 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=28.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
..|.++.+.|-+|+|||||+|++-......-+.+-
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~il 86 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL 86 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEE
Confidence 46788999999999999999999988755544443
No 416
>PLN02200 adenylate kinase family protein
Probab=96.10 E-value=0.0053 Score=63.98 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
+..+++.||||+||||+|+.||+.++.. .++++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gd 76 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGD 76 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccH
Confidence 3478899999999999999999998754 455444
No 417
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.09 E-value=0.019 Score=63.17 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.+.++++.||+|+||||++++++..++.....+.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivt 194 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLIT 194 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEE
Confidence 4568999999999999999999998865433333
No 418
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.09 E-value=0.016 Score=57.24 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=47.3
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh---hhccC----ccccc-ccCcchHHHHHHhcCCCCcEEEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA---DIRGH----RRTYI-GSMPGRLIDGLKRVGVCNPVMLL 413 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~---~l~g~----~~~~v-g~~~g~l~~~~~~~~~~~~vl~i 413 (828)
.+++.||||+|||++|..++..++.+.+.+......+.. .+..| +..|. -+.+..+.+.+........+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 588999999999999999999887766655543322221 11111 11221 12233566666542223458888
Q ss_pred ecccccC
Q 003349 414 DEIDKTG 420 (828)
Q Consensus 414 DEid~l~ 420 (828)
|=+..+.
T Consensus 83 D~Lt~~~ 89 (170)
T PRK05800 83 DCLTTWV 89 (170)
T ss_pred hhHHHHH
Confidence 8876653
No 419
>PRK14700 recombination factor protein RarA; Provisional
Probab=96.08 E-value=0.02 Score=60.69 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=56.4
Q ss_pred CCcEEEEe--cCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhh
Q 003349 455 SKVIFVAT--ANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 530 (828)
Q Consensus 455 ~~viiI~T--tN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~ 530 (828)
..+++|++ -|+...+++||+||+.++.|.+++.++..+++++.+... .+.....+.++++++++|+....++
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~----~~~~~~~~~i~~~al~~ia~~a~GD 80 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQD----EVLAKHKFKIDDGLYNAMHNYNEGD 80 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhh----hccCCcCCCcCHHHHHHHHHhcCCH
Confidence 34566763 366679999999999999999999999999999987531 1222335789999999999877654
No 420
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.08 E-value=0.006 Score=73.21 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
++|..+.++|++|||||||+|.+.+.+....+.+.+++
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg 534 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 35677999999999999999999999977666665444
No 421
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=96.08 E-value=0.0051 Score=54.14 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHcCCCCHHHHHHHhhccCHHHHHHHHHHH
Q 003349 151 PIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATEL 189 (828)
Q Consensus 151 d~~~la~~la~~lpl~~~~kq~LLe~~d~~~Rl~~l~~~ 189 (828)
+|.+++|.+|+.++++.++||+||++.++..|++.++.+
T Consensus 54 ~~~~~~~~~a~~~~~~~~~~q~lL~~~~~~~Rl~~~~~~ 92 (92)
T smart00464 54 TPEPLSDTIAALMPLELHEKQELLELEGTNKRLEKVIKL 92 (92)
T ss_pred CchhhhHHHhhcccccHHHHHHHHhcccHHHHHHHHhcC
Confidence 478999999999999999999999999999999987653
No 422
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.07 E-value=0.0051 Score=61.80 Aligned_cols=28 Identities=29% Similarity=0.592 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
+..+.|+||+|+||||+++.|+..++.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 3568899999999999999999987654
No 423
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.06 E-value=0.0064 Score=62.23 Aligned_cols=38 Identities=32% Similarity=0.532 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC-CeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR-KFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~-~~~~i~~~~ 375 (828)
+++..+.+.||+|+||||++++|+..+.. ....+....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~ 42 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDN 42 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccc
Confidence 45668889999999999999999998864 344444433
No 424
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.05 E-value=0.016 Score=63.09 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+.+++++||||+||||++++++..+
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34679999999999999999999874
No 425
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.04 E-value=0.024 Score=61.35 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
+.+++++||+|+||||++++++..+.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 45799999999999999999998873
No 426
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.01 E-value=0.0041 Score=63.69 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 376 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~ 376 (828)
..|..++|.||+||||||+.+.|-+......+.+.+.+.
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~ 63 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGE 63 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCe
Confidence 467889999999999999999999999877777766653
No 427
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.00 E-value=0.067 Score=57.09 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 375 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 375 (828)
++..++|+||||+||||++..+|..+ +.....++++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 45678899999999999999999877 34455555554
No 428
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.99 E-value=0.0056 Score=60.98 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
..++++||||+||||++++|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46789999999999999999998754
No 429
>PRK13764 ATPase; Provisional
Probab=95.98 E-value=0.011 Score=69.33 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
.+.++|++||||+||||++++++..+...
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~ 284 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADM 284 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 34579999999999999999999988644
No 430
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.98 E-value=0.0062 Score=62.75 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g 65 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDG 65 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECC
Confidence 46789999999999999999999998766556665554
No 431
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.94 E-value=0.0064 Score=62.39 Aligned_cols=28 Identities=43% Similarity=0.712 Sum_probs=24.4
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 343 LCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
++++||||+||||+|+.||+.++...+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 6899999999999999999998765543
No 432
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.93 E-value=0.0078 Score=59.88 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.|..+.++||+|+||||++++++..++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4668899999999999999999999865
No 433
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.93 E-value=0.0099 Score=60.88 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC-CCeEEEecCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG-RKFIRISLGG 375 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~-~~~~~i~~~~ 375 (828)
++..+.+.||||+|||||++.|++.++ .....+....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 456899999999999999999999984 3344455444
No 434
>PRK14974 cell division protein FtsY; Provisional
Probab=95.93 E-value=0.023 Score=62.29 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGG 375 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~ 375 (828)
++..++|+||||+||||++..+|..+. .....+.++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 356899999999999999999998773 3344444443
No 435
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.91 E-value=0.025 Score=60.54 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=26.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
..+-.+++.|+|||||||+|..||..++.+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345589999999999999999999999776
No 436
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.90 E-value=0.0071 Score=63.79 Aligned_cols=23 Identities=35% Similarity=0.741 Sum_probs=21.3
Q ss_pred EEEEcCCCCchhHHHHHHHHHhC
Q 003349 343 LCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~ 365 (828)
++|+|+||+||||+|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999884
No 437
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.90 E-value=0.017 Score=58.72 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l 364 (828)
+..++|+||+|+||||++++++...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4688999999999999999998543
No 438
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.89 E-value=0.02 Score=66.09 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
+...++++||+|+||||++.++...++.
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~ 268 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNT 268 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 3346889999999999999988777653
No 439
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.89 E-value=0.0072 Score=60.05 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=25.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.++..++|+|+||+||||+++.+++.+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999998853
No 440
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.88 E-value=0.0068 Score=64.44 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=37.5
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCchhhhccCccccccc-Cc----chHHHHHHhcCCCCcEEE
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGS-MP----GRLIDGLKRVGVCNPVML 412 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vg~-~~----g~l~~~~~~~~~~~~vl~ 412 (828)
+-++|+|.||+|||++|+.|+..+. .....++-... .-....|... .+ +.+...+.+.-..+.|++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~------~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI 75 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSL------GIDRNDYADSKKEKEARGSLKSAVERALSKDTIVI 75 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHH------H-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccc------ccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEE
Confidence 3578999999999999999999873 34444431111 1111112111 11 234444444444457999
Q ss_pred EecccccCCCC
Q 003349 413 LDEIDKTGSDV 423 (828)
Q Consensus 413 iDEid~l~~~~ 423 (828)
+|....+.+-+
T Consensus 76 ~Dd~nYiKg~R 86 (270)
T PF08433_consen 76 LDDNNYIKGMR 86 (270)
T ss_dssp E-S---SHHHH
T ss_pred EeCCchHHHHH
Confidence 99998875443
No 441
>PLN02674 adenylate kinase
Probab=95.85 E-value=0.014 Score=61.00 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
...++|.||||+||||+++.||+.++.. .++++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gd 64 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGD 64 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhH
Confidence 4578899999999999999999998754 444443
No 442
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.85 E-value=0.0075 Score=62.11 Aligned_cols=29 Identities=41% Similarity=0.633 Sum_probs=24.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.++++||||+||||+++.||+.++...+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 37899999999999999999998755443
No 443
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.84 E-value=0.023 Score=63.18 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l 364 (828)
..+++.|.||||||.||-.+++.+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 368899999999999999999988
No 444
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.84 E-value=0.016 Score=63.78 Aligned_cols=30 Identities=37% Similarity=0.481 Sum_probs=25.8
Q ss_pred CCCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 337 DARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 337 ~~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
-.+|...+++||||||||++++.+++.+..
T Consensus 130 iGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 130 IGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356778899999999999999999988743
No 445
>PRK04182 cytidylate kinase; Provisional
Probab=95.81 E-value=0.0084 Score=59.51 Aligned_cols=29 Identities=41% Similarity=0.780 Sum_probs=25.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.+++.|+||+||||+++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 57899999999999999999999876653
No 446
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.81 E-value=0.0083 Score=61.75 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 64 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNG 64 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 46789999999999999999999998766666666554
No 447
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.81 E-value=0.0051 Score=58.19 Aligned_cols=38 Identities=32% Similarity=0.535 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.++..+.++||+|+|||||+++|+.........+.+.+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~ 46 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILING 46 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETT
T ss_pred cCCCEEEEEccCCCccccceeeeccccccccccccccc
Confidence 36778999999999999999999988766566665554
No 448
>PLN02165 adenylate isopentenyltransferase
Probab=95.79 E-value=0.0084 Score=64.96 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=27.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.++.+++|+||+|+|||+|+..||+.++..++
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eII 72 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEII 72 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCcee
Confidence 56678999999999999999999999875443
No 449
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=95.79 E-value=0.075 Score=53.07 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=56.6
Q ss_pred EEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceEE----------
Q 003349 410 VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEV---------- 479 (828)
Q Consensus 410 vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~---------- 479 (828)
.++++++|++.... +|+||..|++. ..+++||..|..+..+.|.++|||..
T Consensus 57 k~iI~~a~~l~~~A----~NaLLK~LEEP---------------p~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~ 117 (206)
T PRK08485 57 KIIVIAAPSYGIEA----QNALLKILEEP---------------PKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVK 117 (206)
T ss_pred EEEEEchHhhCHHH----HHHHHHHhcCC---------------CCCeEEEEEeCChHhCchHHHhhheecccccccccc
Confidence 45688999998776 89999999964 45778999999999999999999975
Q ss_pred ---EEcCCCCHHHHHHHHHH
Q 003349 480 ---IELPGYTPEEKLRIAMR 496 (828)
Q Consensus 480 ---i~~~~~~~ee~~~Il~~ 496 (828)
+.+..++.++....++.
T Consensus 118 ~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 118 PLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred ccccccCCCCHHHHHHHHHH
Confidence 66788888888777765
No 450
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.78 E-value=0.031 Score=63.10 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE-ecCCcCchhhhccCc----ccccccCcchHHHHHHhcCCCCcEEEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRI-SLGGVKDEADIRGHR----RTYIGSMPGRLIDGLKRVGVCNPVMLL 413 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i-~~~~~~~~~~l~g~~----~~~vg~~~g~l~~~~~~~~~~~~vl~i 413 (828)
+...+|++||+|+||||+..++.+.++.+...+ +..+ .-+..+.|.. ..-+|-+.....+++-+. .+.||.+
T Consensus 257 p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiED-PVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRq--DPDvImV 333 (500)
T COG2804 257 PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIED-PVEYQLPGINQVQVNPKIGLTFARALRAILRQ--DPDVIMV 333 (500)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeC-CeeeecCCcceeecccccCCCHHHHHHHHhcc--CCCeEEE
Confidence 445688999999999999999998887655432 2111 1111111211 122444444433333332 2459999
Q ss_pred ecccc
Q 003349 414 DEIDK 418 (828)
Q Consensus 414 DEid~ 418 (828)
.||-.
T Consensus 334 GEIRD 338 (500)
T COG2804 334 GEIRD 338 (500)
T ss_pred eccCC
Confidence 99965
No 451
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.77 E-value=0.011 Score=57.17 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q 003349 342 VLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l 364 (828)
.++++|+||+||||+|+.++..+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999988
No 452
>PRK14709 hypothetical protein; Provisional
Probab=95.77 E-value=0.072 Score=61.26 Aligned_cols=157 Identities=11% Similarity=0.122 Sum_probs=81.6
Q ss_pred HhhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccc
Q 003349 309 ERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRT 388 (828)
Q Consensus 309 ~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~ 388 (828)
+.|++-..|-++.++.+.+++.............++++|+-|.|||++.+.|...+|.....+++..+.. . .
T Consensus 174 ~fL~~~~~gD~e~~~~lq~~lGy~L~g~~~~q~~~~l~G~G~NGKSt~~~~i~~llG~~~~~~~~~~~~~------~--~ 245 (469)
T PRK14709 174 RFLDEATGGDDELIRFLQQWCGYCLTGDTREHALVFVFGGGGNGKSVFLNVLAGILGDYATTAAMDTFTA------S--K 245 (469)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhHhhcCCCccceEEEEECCCCCcHHHHHHHHHHHHhhhcccCCHHHHhh------c--c
Confidence 4444444566677777777766544432233345778999999999999999999985332222111110 0 0
Q ss_pred ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecC-CCcEEEEecCCCC
Q 003349 389 YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL-SKVIFVATANRAQ 467 (828)
Q Consensus 389 ~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~-~~viiI~TtN~~~ 467 (828)
. +..+-.+.. +.. ..+++.+|++.-..-. .+. +..|-.+..- ........++++ ..+.++++||..-
T Consensus 246 ~-~~~~~~lA~-L~G----krlv~~~E~~~g~~~~----~~~-iK~ltGGD~i-~ar~~~k~~f~f~p~~kl~~~~N~~P 313 (469)
T PRK14709 246 H-DRHPTDLAM-LRG----ARLVTASETEEGRAWA----EAR-IKQMTGGDTI-TARFMRQDFFEFVPQFKLTIVGNHKP 313 (469)
T ss_pred c-cCCchhhHh-hcC----CeEEEeecCCcccccC----HHH-HHhhhCCCcE-EeecccCCceEEEeeeEEEEEcCCCC
Confidence 0 000101111 111 2388889987532211 233 3333222110 011111112222 2355666777753
Q ss_pred ---CCCccccCceEEEEcCCC
Q 003349 468 ---PIPPPLLDRMEVIELPGY 485 (828)
Q Consensus 468 ---~l~~aLl~R~~~i~~~~~ 485 (828)
.-+.++.+|+.+|.|...
T Consensus 314 ~~~d~d~g~~RR~~iIPF~~~ 334 (469)
T PRK14709 314 RLRNVDEAARRRFNIVPFTRK 334 (469)
T ss_pred ccCCCCceeEeeEEEEecCCC
Confidence 457899999999988754
No 453
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.21 Score=56.28 Aligned_cols=27 Identities=37% Similarity=0.724 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
..+..+.|+||+|+||||++..||..+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998754
No 454
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=95.76 E-value=0.029 Score=73.03 Aligned_cols=147 Identities=22% Similarity=0.276 Sum_probs=95.5
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhC-CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCC-----CCcEEEEe
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALG-RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGV-----CNPVMLLD 414 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~-~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~-----~~~vl~iD 414 (828)
..++++||+|+|||.++........ ...+.++++-.++...... ......+..+.... ...++|+|
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~--------~~~~~~~k~~~~~~~~~~~~~~~~f~d 199 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQE--------IIESKLDKRRSGNYGPPLGKKLVLFVD 199 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHH--------HHHHHHHHhcccCCCCCCCceeEEEEe
Confidence 5588999999999988876665542 2333355554433221110 00001111111111 12289999
Q ss_pred cccccCCCCCC--ChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC----CCCccccCceEEEEcCCCCHH
Q 003349 415 EIDKTGSDVRG--DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ----PIPPPLLDRMEVIELPGYTPE 488 (828)
Q Consensus 415 Eid~l~~~~~~--~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~----~l~~aLl~R~~~i~~~~~~~e 488 (828)
|++.-..+..| ++...+.+.++. .+|.+......+...++.+++++|++. .+++.|.+.|.++.+..++.+
T Consensus 200 dinmp~~~~yg~q~~~~~lrq~~e~---~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r~f~~~~~~~~~~~ 276 (1395)
T KOG3595|consen 200 DINMPALDKYGDQPPIELLRQMLEH---GGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLRHFLIVSLNYPSQE 276 (1395)
T ss_pred ccCCchhhhcCCccHHHHHHHHHHh---ceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHHHeeeEeeCCCChh
Confidence 99987665544 446777777774 445555445566677899999999764 788889999999999999999
Q ss_pred HHHHHHHHhh
Q 003349 489 EKLRIAMRHL 498 (828)
Q Consensus 489 e~~~Il~~~l 498 (828)
....|...++
T Consensus 277 sl~~if~~~~ 286 (1395)
T KOG3595|consen 277 SLTQIFNTIL 286 (1395)
T ss_pred hHHHHHHHHH
Confidence 9998887775
No 455
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.009 Score=61.19 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 46788999999999999999999988765556665544
No 456
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.008 Score=59.58 Aligned_cols=28 Identities=36% Similarity=0.718 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
+-++|+|+||+||||+|+-+|+.+....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 3578999999999999999999995443
No 457
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.72 E-value=0.024 Score=59.56 Aligned_cols=77 Identities=14% Similarity=0.307 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCe--EEEecCCcCchhhh-ccCcc-----cccccCcchHHHHHHhcCCCCc-
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKF--IRISLGGVKDEADI-RGHRR-----TYIGSMPGRLIDGLKRVGVCNP- 409 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~--~~i~~~~~~~~~~l-~g~~~-----~~vg~~~g~l~~~~~~~~~~~~- 409 (828)
+..-+|.+||+|+||||+.-++-..++.+. ..+...+ +-+. ....+ .-+|.....+..+++.+-...|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIED---PIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPD 200 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIED---PIEYVHESKKSLINQREVGRDTLSFANALRAALREDPD 200 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecC---chHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCC
Confidence 445688999999999999988888886532 3333222 2111 11111 2245555556666666554444
Q ss_pred EEEEecccc
Q 003349 410 VMLLDEIDK 418 (828)
Q Consensus 410 vl~iDEid~ 418 (828)
||++-|+-.
T Consensus 201 VIlvGEmRD 209 (353)
T COG2805 201 VILVGEMRD 209 (353)
T ss_pred EEEEecccc
Confidence 999999764
No 458
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.71 E-value=0.21 Score=56.42 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVK 377 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~ 377 (828)
+..++|+||+|+||||++..+|..+ |.....++++.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4578999999999999999999877 5566667766543
No 459
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0093 Score=62.29 Aligned_cols=38 Identities=32% Similarity=0.570 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 61 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 47789999999999999999999998766666666554
No 460
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.71 E-value=0.0094 Score=60.02 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 53 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDG 53 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECC
Confidence 46789999999999999999999988765555555444
No 461
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.70 E-value=0.018 Score=59.95 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHH-HHh--CCCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIA-SAL--GRKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la-~~l--~~~~~~i~ 372 (828)
+++..+++.||||||||+++..++ +.+ +.....++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 467789999999999999975554 443 33444444
No 462
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.70 E-value=0.013 Score=56.67 Aligned_cols=37 Identities=32% Similarity=0.480 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCc
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV 376 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~ 376 (828)
|..+.|+|.||+||||+|+++.+.| +.+.+.++...+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 4578999999999999999999888 567777765443
No 463
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.70 E-value=0.0095 Score=59.13 Aligned_cols=28 Identities=39% Similarity=0.672 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..+.|+|+||+||||+++.++..+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999884
No 464
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.68 E-value=0.037 Score=54.61 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=46.5
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh---hhcc----Ccccc-cccCcchHHHHHHhcCCCCcEEEEe
Q 003349 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA---DIRG----HRRTY-IGSMPGRLIDGLKRVGVCNPVMLLD 414 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~---~l~g----~~~~~-vg~~~g~l~~~~~~~~~~~~vl~iD 414 (828)
++++|+||+|||++|..++...+.+.+.+......+.. .+.. .+..| ..+.+..+.+.+...+ ...+++||
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~-~~~~VLID 80 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD-PGDVVLID 80 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC-CCCEEEEE
Confidence 68999999999999999998766666666544322211 1000 11122 2233446667765543 34589999
Q ss_pred cccccC
Q 003349 415 EIDKTG 420 (828)
Q Consensus 415 Eid~l~ 420 (828)
=+....
T Consensus 81 clt~~~ 86 (169)
T cd00544 81 CLTLWV 86 (169)
T ss_pred cHhHHH
Confidence 876654
No 465
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.67 E-value=0.023 Score=69.00 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
+.+++.|+|||||||+++++...+.
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~ 363 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAE 363 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999988773
No 466
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.67 E-value=0.01 Score=60.60 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||++.++..+...-+.+.+.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 59 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 46789999999999999999999998765556665544
No 467
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.67 E-value=0.01 Score=60.88 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 62 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG 62 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 46788999999999999999999998765556665544
No 468
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.67 E-value=0.014 Score=60.70 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.3
Q ss_pred EEEEcCCCCchhHHHHHHHHHh
Q 003349 343 LCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l 364 (828)
+++.|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999874
No 469
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.0092 Score=62.19 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 66 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDG 66 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 47889999999999999999999998865555565544
No 470
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.67 E-value=0.025 Score=62.72 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
++..++++||+|+||||++++++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999887
No 471
>PRK14526 adenylate kinase; Provisional
Probab=95.66 E-value=0.011 Score=60.58 Aligned_cols=27 Identities=37% Similarity=0.709 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
.++|+||||+||||+++.||+.++...
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~ 28 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH 28 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 378999999999999999999886544
No 472
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.66 E-value=0.013 Score=59.29 Aligned_cols=36 Identities=42% Similarity=0.657 Sum_probs=27.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCc
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV 376 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~ 376 (828)
.+++|+||+|+||||++-.+|..+ +.....++++.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 468899999999999988888766 456666666654
No 473
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.66 E-value=0.011 Score=59.98 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKN 61 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 46789999999999999999999998765555555444
No 474
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.66 E-value=0.0096 Score=61.02 Aligned_cols=38 Identities=29% Similarity=0.523 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 62 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG 62 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 46788999999999999999999988765555555544
No 475
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.65 E-value=0.0098 Score=61.02 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+....+.+.+.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDG 61 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 47789999999999999999999988765555555544
No 476
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.011 Score=58.89 Aligned_cols=38 Identities=29% Similarity=0.491 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||+++|+..+...-..+.+.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 46788999999999999999999988765555555444
No 477
>PRK10436 hypothetical protein; Provisional
Probab=95.64 E-value=0.04 Score=63.03 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
+...+|++||+|+||||++.++...++.+
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~~~ 245 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLNTA 245 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhCCC
Confidence 44568999999999999998877777544
No 478
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.64 E-value=0.0098 Score=60.61 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..++|+||||+||||+++.+++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3677899999999999999999999875
No 479
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.63 E-value=0.011 Score=60.38 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 61 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 46788999999999999999999998765556665544
No 480
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.63 E-value=0.014 Score=60.51 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh-----CCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l-----~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+..+ ...-+.+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 66 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG 66 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECC
Confidence 467899999999999999999999988 55556665544
No 481
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.62 E-value=0.011 Score=62.16 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 63 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEG 63 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECC
Confidence 46789999999999999999999988755555555544
No 482
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.62 E-value=0.05 Score=55.77 Aligned_cols=42 Identities=31% Similarity=0.566 Sum_probs=32.1
Q ss_pred HHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 328 YLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 328 ~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
++.|.....-..+..+|+-|+||+||||+|.-+|..+|.+.+
T Consensus 77 Y~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 77 YLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSV 118 (299)
T ss_pred HHHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCcee
Confidence 344444444445668999999999999999999999987644
No 483
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.62 E-value=0.045 Score=54.85 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
..++|+||||+||++++..|.+...
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~ 27 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIP 27 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4688999999999999999998864
No 484
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.61 E-value=0.0092 Score=57.69 Aligned_cols=29 Identities=41% Similarity=0.788 Sum_probs=23.7
Q ss_pred EEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 345 FVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 345 L~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
+.||||+||||+|+.||+.++. ..++++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ 29 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGD 29 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHH
Confidence 5899999999999999999864 4555443
No 485
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.60 E-value=0.011 Score=60.87 Aligned_cols=38 Identities=32% Similarity=0.540 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g 63 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG 63 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 46788999999999999999999998765555565544
No 486
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.59 E-value=0.028 Score=61.96 Aligned_cols=82 Identities=23% Similarity=0.363 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC-----CCeEEEecCCcCc--hhhhc------cCcccccccCcchHHHHHHhcC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKD--EADIR------GHRRTYIGSMPGRLIDGLKRVG 405 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~-----~~~~~i~~~~~~~--~~~l~------g~~~~~vg~~~g~l~~~~~~~~ 405 (828)
++.++.|+||+|+||||+.--||..+. .....++.+.+.. ..++. +.+ --+-..+..+..++....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp-~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP-LEVVYSPKELAEAIEALR 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCc-eEEecCHHHHHHHHHHhh
Confidence 467899999999999976666665542 3445566555432 11111 111 112233445555555544
Q ss_pred CCCcEEEEecccccCCC
Q 003349 406 VCNPVMLLDEIDKTGSD 422 (828)
Q Consensus 406 ~~~~vl~iDEid~l~~~ 422 (828)
. ..+||+|=+.+-..+
T Consensus 281 ~-~d~ILVDTaGrs~~D 296 (407)
T COG1419 281 D-CDVILVDTAGRSQYD 296 (407)
T ss_pred c-CCEEEEeCCCCCccC
Confidence 3 258998988775544
No 487
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.58 E-value=0.012 Score=61.49 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 70 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNG 70 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 46788999999999999999999998766666666554
No 488
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.58 E-value=0.012 Score=60.51 Aligned_cols=38 Identities=37% Similarity=0.540 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..++|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g 61 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG 61 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 47789999999999999999999998765555555544
No 489
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.58 E-value=0.012 Score=58.69 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||++.++..+....+.+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g 63 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDG 63 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 46789999999999999999999998765555555544
No 490
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.58 E-value=0.0085 Score=59.68 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
|..++|+||+|+||||+++.|++.++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 346889999999999999999997644
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.58 E-value=0.016 Score=46.65 Aligned_cols=25 Identities=40% Similarity=0.707 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l 364 (828)
+...+|+||+|+||||+.-++.-.+
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998776
No 492
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.56 E-value=0.015 Score=59.04 Aligned_cols=33 Identities=36% Similarity=0.539 Sum_probs=25.7
Q ss_pred EEEEcCCCCchhHHHHHHHHHhC-CCeEEEecCC
Q 003349 343 LCFVGPPGVGKTSLASSIASALG-RKFIRISLGG 375 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~-~~~~~i~~~~ 375 (828)
+.+.||||+||||++++|+..++ .....+.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 67999999999999999999873 3344555444
No 493
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.55 E-value=0.01 Score=61.80 Aligned_cols=38 Identities=39% Similarity=0.610 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 47889999999999999999999998765555565544
No 494
>PRK05439 pantothenate kinase; Provisional
Probab=95.55 E-value=0.047 Score=59.01 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCC-----CeEEEecCCcC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGR-----KFIRISLGGVK 377 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~-----~~~~i~~~~~~ 377 (828)
.+..+.+.|+||+||||+|+.|+..++. ....+.+.++.
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 3447889999999999999999998743 35567766654
No 495
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.55 E-value=0.011 Score=60.96 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 65 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG 65 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 46788999999999999999999988765556665544
No 496
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.54 E-value=0.01 Score=60.86 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||...++......-..+.+.+
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g 66 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING 66 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 47788999999999999999999988866666655554
No 497
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.54 E-value=0.011 Score=60.94 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 63 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYING 63 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 46788999999999999999999998765555555544
No 498
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.54 E-value=0.36 Score=53.90 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=46.4
Q ss_pred CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC--CCCCccccCc-eEEEEc
Q 003349 406 VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA--QPIPPPLLDR-MEVIEL 482 (828)
Q Consensus 406 ~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~--~~l~~aLl~R-~~~i~~ 482 (828)
...|||+||.+..-... .+.++..|.+--. ..... +..+|+| .|++.. ..|..+|=+| |..|.+
T Consensus 147 e~~PVVVIdnF~~k~~~-----~~~iy~~laeWAa-~Lv~~------nIAHVIF-lT~dv~~~k~LskaLPn~vf~tI~L 213 (431)
T PF10443_consen 147 ERRPVVVIDNFLHKAEE-----NDFIYDKLAEWAA-SLVQN------NIAHVIF-LTDDVSYSKPLSKALPNRVFKTISL 213 (431)
T ss_pred ccCCEEEEcchhccCcc-----cchHHHHHHHHHH-HHHhc------CccEEEE-ECCCCchhhhHHHhCCCCceeEEee
Confidence 34689999998653322 2333333321100 01110 1233344 343433 2677777776 568999
Q ss_pred CCCCHHHHHHHHHHhhcH
Q 003349 483 PGYTPEEKLRIAMRHLIP 500 (828)
Q Consensus 483 ~~~~~ee~~~Il~~~l~~ 500 (828)
...+.+.-++.+..+|..
T Consensus 214 ~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 214 SDASPESAKQYVLSQLDE 231 (431)
T ss_pred cCCCHHHHHHHHHHHhcc
Confidence 999999888888888753
No 499
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.54 E-value=0.011 Score=60.97 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||+++|+..+....+.+.+.+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 66 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNG 66 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 46789999999999999999999998766556665544
No 500
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.011 Score=61.80 Aligned_cols=38 Identities=21% Similarity=0.476 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 62 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDG 62 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECC
Confidence 47789999999999999999999988755555555444
Done!