Query 003349
Match_columns 828
No_of_seqs 599 out of 5030
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 22:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m6a_A ATP-dependent protease 100.0 1E-77 3.5E-82 698.9 41.9 534 237-825 6-539 (543)
2 3k1j_A LON protease, ATP-depen 100.0 1.7E-48 5.7E-53 460.4 18.9 352 408-818 202-579 (604)
3 1rre_A ATP-dependent protease 100.0 8.3E-38 2.9E-42 312.8 20.0 185 631-819 6-190 (200)
4 2x36_A LON protease homolog, m 100.0 2.6E-37 9E-42 310.1 19.2 184 631-819 5-198 (207)
5 1xhk_A Putative protease LA ho 100.0 3.4E-34 1.2E-38 285.0 17.9 176 633-817 3-185 (187)
6 1z0w_A Putative protease LA ho 100.0 1.8E-34 6.3E-39 290.1 15.6 174 633-818 9-188 (207)
7 3ljc_A ATP-dependent protease 100.0 5E-29 1.7E-33 261.2 21.9 191 31-234 61-251 (252)
8 4b4t_K 26S protease regulatory 99.9 1.8E-27 6E-32 265.1 10.6 229 288-554 147-397 (428)
9 1r6b_X CLPA protein; AAA+, N-t 99.9 1.4E-25 4.9E-30 272.3 27.1 311 245-589 386-736 (758)
10 4b4t_J 26S protease regulatory 99.9 1.3E-26 4.5E-31 254.1 16.1 209 307-554 142-372 (405)
11 4b4t_I 26S protease regulatory 99.9 6.4E-26 2.2E-30 249.1 18.0 208 308-554 177-406 (437)
12 4b4t_M 26S protease regulatory 99.9 1.4E-25 4.7E-30 250.0 17.5 209 308-554 176-405 (434)
13 4b4t_H 26S protease regulatory 99.9 5.6E-26 1.9E-30 251.9 11.2 210 307-554 203-433 (467)
14 4b4t_L 26S protease subunit RP 99.9 3.8E-25 1.3E-29 246.6 17.0 209 308-554 176-405 (437)
15 3pxi_A Negative regulator of g 99.9 6.5E-24 2.2E-28 257.4 20.1 274 275-590 453-746 (758)
16 1g41_A Heat shock protein HSLU 99.9 8.6E-24 2.9E-28 235.9 18.9 235 303-552 5-412 (444)
17 1qvr_A CLPB protein; coiled co 99.9 6.9E-24 2.4E-28 260.0 18.2 280 278-589 523-840 (854)
18 4fcw_A Chaperone protein CLPB; 99.9 5.4E-22 1.8E-26 214.8 21.7 243 301-554 5-285 (311)
19 1xwi_A SKD1 protein; VPS4B, AA 99.9 4.7E-22 1.6E-26 216.3 20.0 208 312-555 11-234 (322)
20 3m65_A ATP-dependent protease 99.9 5.8E-22 2E-26 201.8 19.0 156 32-200 53-208 (209)
21 3hws_A ATP-dependent CLP prote 99.9 2.9E-22 1E-26 222.0 14.8 238 304-549 6-324 (363)
22 3cf2_A TER ATPase, transitiona 99.9 7.8E-22 2.7E-26 234.7 14.9 207 310-555 201-426 (806)
23 3eie_A Vacuolar protein sortin 99.9 1.1E-21 3.8E-26 213.7 14.8 208 312-555 17-239 (322)
24 3cf2_A TER ATPase, transitiona 99.9 1E-22 3.6E-27 242.2 6.0 206 312-555 476-702 (806)
25 2qp9_X Vacuolar protein sortin 99.9 3.3E-21 1.1E-25 212.6 15.5 208 312-555 50-272 (355)
26 2zan_A Vacuolar protein sortin 99.9 9.2E-21 3.2E-25 215.1 19.4 207 313-555 134-356 (444)
27 1um8_A ATP-dependent CLP prote 99.8 1.2E-20 4.1E-25 210.1 18.1 240 303-550 11-342 (376)
28 1ofh_A ATP-dependent HSL prote 99.8 4.5E-20 1.6E-24 199.3 19.2 236 302-550 4-276 (310)
29 1zbo_A Hypothetical protein BP 99.8 6.7E-20 2.3E-24 186.7 17.0 145 42-198 59-204 (210)
30 3syl_A Protein CBBX; photosynt 99.8 1.4E-19 4.6E-24 195.8 18.0 217 301-553 19-268 (309)
31 3vfd_A Spastin; ATPase, microt 99.8 1.2E-19 4E-24 203.0 17.3 207 313-554 115-336 (389)
32 3cf0_A Transitional endoplasmi 99.8 3E-20 1E-24 200.3 12.0 204 313-554 15-239 (301)
33 3d8b_A Fidgetin-like protein 1 99.8 1.8E-19 6.1E-24 198.9 17.3 207 313-554 84-305 (357)
34 3b9p_A CG5977-PA, isoform A; A 99.8 2.2E-19 7.6E-24 193.1 16.3 208 313-554 21-243 (297)
35 3t15_A Ribulose bisphosphate c 99.8 4.9E-19 1.7E-23 189.9 18.1 166 339-529 35-217 (293)
36 2qz4_A Paraplegin; AAA+, SPG7, 99.8 5.6E-19 1.9E-23 186.0 16.2 206 312-554 5-232 (262)
37 2ce7_A Cell division protein F 99.8 1.1E-18 3.9E-23 197.5 18.3 204 312-554 15-239 (476)
38 2x8a_A Nuclear valosin-contain 99.8 8.1E-19 2.8E-23 186.2 15.4 209 310-554 7-236 (274)
39 1lv7_A FTSH; alpha/beta domain 99.8 3.3E-18 1.1E-22 180.0 18.5 204 312-554 11-235 (257)
40 3h4m_A Proteasome-activating n 99.8 1E-18 3.4E-23 186.7 14.7 207 313-554 17-241 (285)
41 3hu3_A Transitional endoplasmi 99.8 4.9E-19 1.7E-23 202.2 12.7 205 312-554 203-425 (489)
42 2dhr_A FTSH; AAA+ protein, hex 99.7 1.4E-17 4.8E-22 189.7 16.0 205 311-554 29-254 (499)
43 3pfi_A Holliday junction ATP-d 99.7 8.1E-17 2.8E-21 176.3 20.0 200 313-545 29-232 (338)
44 1ixz_A ATP-dependent metallopr 99.7 6.1E-17 2.1E-21 169.9 14.5 203 313-554 16-239 (254)
45 1ypw_A Transitional endoplasmi 99.7 2.8E-19 9.6E-24 216.6 -5.1 206 311-554 475-701 (806)
46 2r62_A Cell division protease 99.7 3.7E-18 1.2E-22 180.7 2.3 202 313-551 11-233 (268)
47 2r44_A Uncharacterized protein 99.7 3.8E-16 1.3E-20 170.5 16.8 203 304-527 18-239 (331)
48 1iy2_A ATP-dependent metallopr 99.7 3.5E-16 1.2E-20 166.5 15.5 204 312-554 39-263 (278)
49 3uk6_A RUVB-like 2; hexameric 99.7 6E-16 2.1E-20 171.4 18.0 206 312-552 43-311 (368)
50 1hqc_A RUVB; extended AAA-ATPa 99.7 1.6E-15 5.3E-20 164.9 19.0 199 313-543 12-214 (324)
51 3pvs_A Replication-associated 99.7 5.4E-16 1.8E-20 175.3 15.8 184 313-544 26-219 (447)
52 1ojl_A Transcriptional regulat 99.6 1.2E-15 4.1E-20 164.3 14.1 213 313-544 2-232 (304)
53 2bjv_A PSP operon transcriptio 99.6 1.5E-15 5.1E-20 160.3 14.2 214 313-544 6-237 (265)
54 3u61_B DNA polymerase accessor 99.6 7.6E-16 2.6E-20 167.5 12.1 186 313-541 26-217 (324)
55 3te6_A Regulatory protein SIR3 99.6 4.4E-15 1.5E-19 159.3 15.6 212 315-550 22-285 (318)
56 1d2n_A N-ethylmaleimide-sensit 99.6 1.6E-15 5.5E-20 160.8 11.9 193 313-544 33-246 (272)
57 2c9o_A RUVB-like 1; hexameric 99.6 1.6E-14 5.4E-19 164.6 19.4 65 311-376 35-101 (456)
58 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 2.4E-15 8.2E-20 171.5 11.7 203 303-527 12-238 (500)
59 2chg_A Replication factor C sm 99.6 2.4E-14 8.1E-19 145.7 17.9 184 313-544 17-208 (226)
60 3pxg_A Negative regulator of g 99.6 1E-14 3.5E-19 166.4 16.3 189 313-550 180-384 (468)
61 1ypw_A Transitional endoplasmi 99.6 2.8E-15 9.5E-20 181.7 12.0 205 312-554 203-425 (806)
62 1g8p_A Magnesium-chelatase 38 99.6 2.5E-14 8.5E-19 157.1 16.0 210 313-543 24-298 (350)
63 2chq_A Replication factor C sm 99.5 2.9E-14 1E-18 154.1 14.6 183 313-543 17-207 (319)
64 1iqp_A RFCS; clamp loader, ext 99.5 6.4E-14 2.2E-18 152.0 15.6 181 313-541 25-213 (327)
65 1l8q_A Chromosomal replication 99.5 2.4E-14 8.3E-19 155.7 11.7 170 339-546 36-214 (324)
66 1njg_A DNA polymerase III subu 99.5 2.4E-13 8.1E-18 140.1 18.0 192 313-540 23-228 (250)
67 1sxj_D Activator 1 41 kDa subu 99.5 5.3E-14 1.8E-18 154.5 12.6 193 313-542 37-237 (353)
68 1jbk_A CLPB protein; beta barr 99.5 2.1E-14 7.1E-19 142.6 8.3 154 311-494 20-194 (195)
69 3pxi_A Negative regulator of g 99.5 1.2E-13 4E-18 167.5 16.3 168 313-529 180-363 (758)
70 2qby_B CDC6 homolog 3, cell di 99.5 3.1E-13 1.1E-17 150.1 16.7 201 313-542 20-247 (384)
71 3f9v_A Minichromosome maintena 99.5 1.5E-14 5.3E-19 169.2 5.4 179 306-498 288-490 (595)
72 1sxj_B Activator 1 37 kDa subu 99.5 2.6E-13 9E-18 146.9 14.7 182 313-543 21-212 (323)
73 1qvr_A CLPB protein; coiled co 99.5 1.2E-13 4E-18 169.3 13.4 202 312-549 169-390 (854)
74 1jr3_A DNA polymerase III subu 99.5 8.7E-13 3E-17 146.0 17.7 195 313-543 16-224 (373)
75 2v1u_A Cell division control p 99.5 3.1E-13 1.1E-17 150.0 14.0 194 313-528 19-236 (387)
76 1in4_A RUVB, holliday junction 99.4 1.8E-12 6.3E-17 141.4 18.9 199 313-544 25-227 (334)
77 1sxj_A Activator 1 95 kDa subu 99.4 6.2E-13 2.1E-17 153.7 16.0 200 313-544 39-256 (516)
78 1r6b_X CLPA protein; AAA+, N-t 99.4 9E-13 3.1E-17 159.9 17.2 202 312-549 185-407 (758)
79 2z4s_A Chromosomal replication 99.4 1.4E-13 4.9E-18 155.7 9.2 172 340-547 130-313 (440)
80 1sxj_C Activator 1 40 kDa subu 99.4 1.1E-12 3.9E-17 143.5 15.5 169 313-528 25-202 (340)
81 1sxj_E Activator 1 40 kDa subu 99.4 4.9E-13 1.7E-17 147.1 12.3 194 313-543 14-240 (354)
82 3n70_A Transport activator; si 99.4 2.6E-13 8.7E-18 129.5 8.5 131 314-485 2-144 (145)
83 2p65_A Hypothetical protein PF 99.4 1.4E-13 4.6E-18 136.2 5.8 146 311-486 20-187 (187)
84 1a5t_A Delta prime, HOLB; zinc 99.4 3.6E-12 1.2E-16 139.1 16.6 171 318-529 7-196 (334)
85 1qzm_A ATP-dependent protease 99.4 1.2E-12 4.1E-17 112.5 9.8 93 483-624 1-94 (94)
86 3bos_A Putative DNA replicatio 99.4 2.7E-12 9.4E-17 132.4 14.6 176 319-545 37-222 (242)
87 1fnn_A CDC6P, cell division co 99.4 3.6E-12 1.2E-16 141.6 15.9 191 313-527 17-227 (389)
88 3dzd_A Transcriptional regulat 99.4 3.2E-12 1.1E-16 141.1 14.7 211 315-544 131-358 (368)
89 1ny5_A Transcriptional regulat 99.4 4.8E-12 1.6E-16 140.8 14.8 212 314-544 138-367 (387)
90 2gno_A DNA polymerase III, gam 99.3 2.8E-12 9.4E-17 137.7 9.6 143 317-498 1-152 (305)
91 3co5_A Putative two-component 99.3 2.8E-13 9.4E-18 129.0 1.3 131 314-485 5-142 (143)
92 2qby_A CDC6 homolog 1, cell di 99.3 1.1E-11 3.8E-16 137.3 13.2 191 313-528 20-232 (386)
93 3f8t_A Predicted ATPase involv 99.2 1.4E-11 4.9E-16 136.2 10.2 198 304-528 205-428 (506)
94 4akg_A Glutathione S-transfera 99.2 2.1E-11 7.2E-16 161.1 11.6 200 340-546 1267-1488(2695)
95 2ane_A ATP-dependent protease 99.1 3E-10 1E-14 104.8 9.1 59 37-100 67-125 (125)
96 3vkg_A Dynein heavy chain, cyt 98.9 7.4E-10 2.5E-14 147.1 7.1 197 339-546 1303-1526(3245)
97 1w5s_A Origin recognition comp 98.9 2.6E-09 9E-14 119.5 10.6 195 313-528 22-250 (412)
98 2kjq_A DNAA-related protein; s 98.7 1.4E-08 4.9E-13 96.9 6.8 100 339-478 35-140 (149)
99 4akg_A Glutathione S-transfera 98.7 4.7E-08 1.6E-12 129.6 13.9 133 341-495 646-790 (2695)
100 3ec2_A DNA replication protein 98.7 1.8E-08 6E-13 99.3 6.1 123 317-467 18-144 (180)
101 1tue_A Replication protein E1; 98.6 4.7E-08 1.6E-12 96.8 6.9 137 317-485 40-179 (212)
102 1u0j_A DNA replication protein 98.6 1.4E-07 4.8E-12 97.8 10.7 127 339-495 103-248 (267)
103 1jr3_D DNA polymerase III, del 98.5 5.1E-07 1.7E-11 98.5 12.3 160 339-544 17-189 (343)
104 2qen_A Walker-type ATPase; unk 98.4 1.3E-06 4.3E-11 95.0 13.9 180 314-529 13-237 (350)
105 2fna_A Conserved hypothetical 98.4 1.1E-06 3.6E-11 95.8 13.3 159 314-498 14-222 (357)
106 2w58_A DNAI, primosome compone 98.4 4.4E-07 1.5E-11 90.8 7.9 71 341-420 55-128 (202)
107 2r2a_A Uncharacterized protein 98.3 1.2E-06 4E-11 87.6 9.3 131 341-485 6-153 (199)
108 2qgz_A Helicase loader, putati 98.3 2.4E-07 8.3E-12 99.4 4.3 90 319-420 134-227 (308)
109 3vkg_A Dynein heavy chain, cyt 98.3 3.1E-06 1.1E-10 113.1 15.1 134 342-496 606-751 (3245)
110 2vhj_A Ntpase P4, P4; non- hyd 98.0 4E-06 1.4E-10 89.0 5.3 72 339-423 122-198 (331)
111 3cmw_A Protein RECA, recombina 97.9 5E-05 1.7E-09 96.9 13.1 84 339-422 1081-1175(1706)
112 1ye8_A Protein THEP1, hypothet 97.8 1.5E-05 5.2E-10 78.1 6.0 26 342-367 2-27 (178)
113 2r8r_A Sensor protein; KDPD, P 97.6 0.00024 8.3E-09 71.5 9.9 134 341-493 7-172 (228)
114 2orw_A Thymidine kinase; TMTK, 97.5 5.5E-05 1.9E-09 74.5 3.9 26 339-364 2-27 (184)
115 2i3b_A HCR-ntpase, human cance 97.4 0.00014 4.6E-09 72.0 5.4 25 340-364 1-25 (189)
116 1svm_A Large T antigen; AAA+ f 97.3 0.00026 8.7E-09 77.6 7.4 31 338-368 167-197 (377)
117 2pnl_A Protease VP4; acyl-enzy 97.2 0.00089 3E-08 63.3 8.5 71 705-779 102-173 (203)
118 1qhx_A CPT, protein (chloramph 97.1 0.00046 1.6E-08 66.9 5.5 35 340-374 3-37 (178)
119 2gef_A Protease VP4; birnaviru 97.1 0.001 3.4E-08 62.9 7.0 58 719-783 131-188 (217)
120 3upu_A ATP-dependent DNA helic 97.0 0.0015 5E-08 73.9 9.6 41 317-364 29-69 (459)
121 3vaa_A Shikimate kinase, SK; s 97.0 0.0006 2E-08 67.7 5.0 32 339-370 24-55 (199)
122 3trf_A Shikimate kinase, SK; a 96.9 0.00062 2.1E-08 66.5 4.9 31 340-370 5-35 (185)
123 2eyu_A Twitching motility prot 96.9 0.00032 1.1E-08 73.0 2.5 29 338-366 23-51 (261)
124 1z6t_A APAF-1, apoptotic prote 96.9 0.014 4.7E-07 68.0 16.5 45 314-362 125-169 (591)
125 2p5t_B PEZT; postsegregational 96.8 0.0012 4E-08 68.4 6.3 38 338-375 30-67 (253)
126 1kag_A SKI, shikimate kinase I 96.8 0.00068 2.3E-08 65.4 4.1 30 340-369 4-33 (173)
127 2a5y_B CED-4; apoptosis; HET: 96.8 0.15 5.3E-06 58.6 24.6 150 316-497 131-305 (549)
128 3jvv_A Twitching mobility prot 96.8 0.00073 2.5E-08 73.5 4.3 28 339-366 122-149 (356)
129 2cvh_A DNA repair and recombin 96.8 0.0023 8E-08 64.0 7.8 38 338-375 18-55 (220)
130 3kb2_A SPBC2 prophage-derived 96.7 0.0011 3.8E-08 63.6 4.7 29 342-370 3-31 (173)
131 3iij_A Coilin-interacting nucl 96.7 0.0011 3.8E-08 64.4 4.6 31 339-369 10-40 (180)
132 2iyv_A Shikimate kinase, SK; t 96.7 0.0011 3.9E-08 64.6 4.6 30 341-370 3-32 (184)
133 1knq_A Gluconate kinase; ALFA/ 96.7 0.0011 3.8E-08 64.0 4.5 30 338-367 6-35 (175)
134 1zp6_A Hypothetical protein AT 96.6 0.00079 2.7E-08 66.1 3.1 35 338-372 7-41 (191)
135 1via_A Shikimate kinase; struc 96.6 0.0012 4E-08 64.0 4.2 28 342-369 6-33 (175)
136 1y63_A LMAJ004144AAA protein; 96.6 0.0009 3.1E-08 65.6 3.4 32 338-369 8-40 (184)
137 1zuh_A Shikimate kinase; alpha 96.6 0.0013 4.6E-08 63.1 4.5 31 340-370 7-37 (168)
138 2b8t_A Thymidine kinase; deoxy 96.6 0.0099 3.4E-07 60.0 11.1 80 338-421 10-103 (223)
139 4eun_A Thermoresistant glucoki 96.6 0.0014 4.8E-08 65.1 4.7 29 338-366 27-55 (200)
140 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0014 4.8E-08 70.6 5.0 78 339-418 170-251 (330)
141 2rhm_A Putative kinase; P-loop 96.6 0.0013 4.5E-08 64.5 4.4 32 339-370 4-35 (193)
142 2cdn_A Adenylate kinase; phosp 96.6 0.0019 6.4E-08 64.1 5.5 33 338-370 18-50 (201)
143 3c8u_A Fructokinase; YP_612366 96.6 0.0027 9.2E-08 63.4 6.5 39 338-376 20-61 (208)
144 2vli_A Antibiotic resistance p 96.6 0.0013 4.5E-08 63.9 4.0 31 339-369 4-34 (183)
145 1gvn_B Zeta; postsegregational 96.5 0.0032 1.1E-07 66.4 7.2 36 338-373 31-66 (287)
146 2px0_A Flagellar biosynthesis 96.5 0.061 2.1E-06 56.7 17.0 79 338-417 103-192 (296)
147 3cm0_A Adenylate kinase; ATP-b 96.5 0.0012 4.1E-08 64.5 3.4 30 340-369 4-33 (186)
148 2ewv_A Twitching motility prot 96.5 0.0013 4.4E-08 72.2 4.0 29 338-366 134-162 (372)
149 2c95_A Adenylate kinase 1; tra 96.5 0.0016 5.3E-08 64.1 4.3 31 339-369 8-38 (196)
150 1aky_A Adenylate kinase; ATP:A 96.5 0.0019 6.4E-08 65.1 4.7 31 339-369 3-33 (220)
151 3t61_A Gluconokinase; PSI-biol 96.5 0.0022 7.6E-08 63.6 5.0 30 340-369 18-47 (202)
152 3sfz_A APAF-1, apoptotic pepti 96.4 0.033 1.1E-06 70.6 17.0 152 313-497 124-298 (1249)
153 3lw7_A Adenylate kinase relate 96.4 0.0019 6.5E-08 61.9 4.2 29 341-370 2-30 (179)
154 2fz4_A DNA repair protein RAD2 96.4 0.0097 3.3E-07 60.8 9.5 31 342-372 110-140 (237)
155 3umf_A Adenylate kinase; rossm 96.4 0.0019 6.5E-08 65.1 4.0 30 339-368 28-57 (217)
156 2ze6_A Isopentenyl transferase 96.4 0.0019 6.7E-08 66.7 4.2 30 342-371 3-32 (253)
157 2pez_A Bifunctional 3'-phospho 96.4 0.0027 9.2E-08 61.7 5.0 34 339-372 4-40 (179)
158 1kht_A Adenylate kinase; phosp 96.4 0.0017 5.8E-08 63.5 3.6 26 340-365 3-28 (192)
159 1tev_A UMP-CMP kinase; ploop, 96.4 0.002 6.8E-08 63.2 4.0 30 340-369 3-32 (196)
160 3e1s_A Exodeoxyribonuclease V, 96.4 0.0044 1.5E-07 71.9 7.5 35 340-374 204-241 (574)
161 3cmu_A Protein RECA, recombina 96.4 0.0037 1.3E-07 81.0 7.4 39 338-376 1425-1466(2050)
162 1e6c_A Shikimate kinase; phosp 96.3 0.0023 7.8E-08 61.6 4.2 28 342-369 4-31 (173)
163 3uie_A Adenylyl-sulfate kinase 96.3 0.003 1E-07 62.6 5.0 28 338-365 23-50 (200)
164 3be4_A Adenylate kinase; malar 96.3 0.0021 7.3E-08 64.6 3.9 32 339-370 4-35 (217)
165 2bwj_A Adenylate kinase 5; pho 96.3 0.0026 9E-08 62.6 4.3 30 340-369 12-41 (199)
166 3sr0_A Adenylate kinase; phosp 96.2 0.0027 9.1E-08 63.5 4.2 28 342-369 2-29 (206)
167 1g5t_A COB(I)alamin adenosyltr 96.2 0.011 3.8E-07 58.1 8.5 120 340-478 28-172 (196)
168 1zd8_A GTP:AMP phosphotransfer 96.2 0.0027 9.1E-08 64.4 4.1 31 339-369 6-36 (227)
169 1ak2_A Adenylate kinase isoenz 96.2 0.0034 1.2E-07 63.9 4.8 31 339-369 15-45 (233)
170 2pt5_A Shikimate kinase, SK; a 96.2 0.0034 1.2E-07 60.0 4.6 29 342-370 2-30 (168)
171 1qf9_A UMP/CMP kinase, protein 96.2 0.0031 1.1E-07 61.6 4.4 30 340-369 6-35 (194)
172 3dl0_A Adenylate kinase; phosp 96.2 0.0032 1.1E-07 63.1 4.4 29 342-370 2-30 (216)
173 3fb4_A Adenylate kinase; psych 96.2 0.0034 1.2E-07 62.8 4.6 29 342-370 2-30 (216)
174 3tlx_A Adenylate kinase 2; str 96.1 0.004 1.4E-07 63.9 5.0 31 339-369 28-58 (243)
175 1zak_A Adenylate kinase; ATP:A 96.1 0.0026 9E-08 64.1 3.5 30 339-368 4-33 (222)
176 3tr0_A Guanylate kinase, GMP k 96.1 0.0032 1.1E-07 62.4 4.1 27 339-365 6-32 (205)
177 2bbw_A Adenylate kinase 4, AK4 96.1 0.004 1.4E-07 63.9 4.9 31 339-369 26-56 (246)
178 1ly1_A Polynucleotide kinase; 96.1 0.0021 7E-08 62.2 2.6 22 342-363 4-25 (181)
179 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0035 1.2E-07 67.5 4.5 52 317-370 3-54 (359)
180 3nwj_A ATSK2; P loop, shikimat 96.1 0.0033 1.1E-07 64.8 4.2 31 340-370 48-78 (250)
181 1ukz_A Uridylate kinase; trans 96.1 0.0038 1.3E-07 61.8 4.5 30 340-369 15-44 (203)
182 3tif_A Uncharacterized ABC tra 96.1 0.0031 1.1E-07 64.4 4.0 38 338-375 29-66 (235)
183 1cke_A CK, MSSA, protein (cyti 96.1 0.0037 1.3E-07 63.0 4.5 30 340-369 5-34 (227)
184 1kgd_A CASK, peripheral plasma 96.1 0.0036 1.2E-07 61.0 4.0 27 339-365 4-30 (180)
185 3tau_A Guanylate kinase, GMP k 96.0 0.0042 1.4E-07 62.1 4.3 29 338-366 6-34 (208)
186 2zr9_A Protein RECA, recombina 96.0 0.015 5.1E-07 63.0 8.9 38 338-375 59-99 (349)
187 2pcj_A ABC transporter, lipopr 96.0 0.0034 1.2E-07 63.6 3.6 38 338-375 28-65 (224)
188 1htw_A HI0065; nucleotide-bind 96.0 0.0029 1E-07 60.4 2.9 27 338-364 31-57 (158)
189 3hr8_A Protein RECA; alpha and 96.0 0.013 4.6E-07 63.3 8.4 38 338-375 59-99 (356)
190 1b0u_A Histidine permease; ABC 96.0 0.0039 1.3E-07 64.8 4.0 38 338-375 30-67 (262)
191 4e22_A Cytidylate kinase; P-lo 96.0 0.0047 1.6E-07 63.8 4.5 32 338-369 25-56 (252)
192 3fvq_A Fe(3+) IONS import ATP- 95.9 0.0043 1.5E-07 67.2 4.2 39 338-376 28-66 (359)
193 2og2_A Putative signal recogni 95.9 0.033 1.1E-06 60.4 11.2 28 338-365 155-182 (359)
194 1rz3_A Hypothetical protein rb 95.9 0.011 3.9E-07 58.5 7.0 37 338-374 20-59 (201)
195 2jaq_A Deoxyguanosine kinase; 95.9 0.0046 1.6E-07 61.0 4.2 28 342-369 2-29 (205)
196 2v54_A DTMP kinase, thymidylat 95.9 0.0047 1.6E-07 61.1 4.2 34 339-372 3-37 (204)
197 1odf_A YGR205W, hypothetical 3 95.9 0.0089 3.1E-07 63.0 6.5 29 338-366 29-57 (290)
198 2plr_A DTMP kinase, probable t 95.9 0.0042 1.4E-07 61.7 3.8 28 340-367 4-31 (213)
199 1e4v_A Adenylate kinase; trans 95.9 0.0052 1.8E-07 61.6 4.3 29 342-370 2-30 (214)
200 2pbr_A DTMP kinase, thymidylat 95.9 0.0065 2.2E-07 59.4 5.0 31 342-372 2-35 (195)
201 2qor_A Guanylate kinase; phosp 95.9 0.0043 1.5E-07 61.7 3.7 28 338-365 10-37 (204)
202 3gfo_A Cobalt import ATP-bindi 95.9 0.0043 1.5E-07 64.9 3.8 38 338-375 32-69 (275)
203 3r20_A Cytidylate kinase; stru 95.9 0.0056 1.9E-07 62.3 4.5 29 340-368 9-37 (233)
204 1sgw_A Putative ABC transporte 95.9 0.0044 1.5E-07 62.3 3.7 38 338-375 33-70 (214)
205 2olj_A Amino acid ABC transpor 95.8 0.0048 1.7E-07 64.1 4.0 38 338-375 48-85 (263)
206 2j41_A Guanylate kinase; GMP, 95.8 0.0041 1.4E-07 61.6 3.3 26 339-364 5-30 (207)
207 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0061 2.1E-07 63.2 4.7 33 340-372 4-39 (260)
208 3rlf_A Maltose/maltodextrin im 95.8 0.0055 1.9E-07 66.9 4.5 38 338-375 27-64 (381)
209 1znw_A Guanylate kinase, GMP k 95.8 0.005 1.7E-07 61.4 3.9 28 338-365 18-45 (207)
210 1g6h_A High-affinity branched- 95.8 0.0047 1.6E-07 64.0 3.8 38 338-375 31-68 (257)
211 2wwf_A Thymidilate kinase, put 95.8 0.0028 9.7E-08 63.1 2.0 30 339-368 9-38 (212)
212 1mv5_A LMRA, multidrug resista 95.8 0.0031 1.1E-07 64.8 2.3 38 338-375 26-63 (243)
213 1ji0_A ABC transporter; ATP bi 95.8 0.005 1.7E-07 63.1 3.8 38 338-375 30-67 (240)
214 1jjv_A Dephospho-COA kinase; P 95.8 0.0049 1.7E-07 61.2 3.6 27 342-369 4-30 (206)
215 3dm5_A SRP54, signal recogniti 95.8 0.12 4.2E-06 57.3 15.1 38 339-376 99-139 (443)
216 1nn5_A Similar to deoxythymidy 95.8 0.0034 1.2E-07 62.6 2.4 29 339-367 8-36 (215)
217 3asz_A Uridine kinase; cytidin 95.8 0.0056 1.9E-07 61.0 4.0 35 338-372 4-38 (211)
218 2ff7_A Alpha-hemolysin translo 95.8 0.0052 1.8E-07 63.2 3.8 38 338-375 33-70 (247)
219 1vpl_A ABC transporter, ATP-bi 95.8 0.0056 1.9E-07 63.4 4.0 38 338-375 39-76 (256)
220 2xb4_A Adenylate kinase; ATP-b 95.7 0.0061 2.1E-07 61.6 4.2 27 342-368 2-28 (223)
221 3ake_A Cytidylate kinase; CMP 95.7 0.0075 2.5E-07 59.7 4.8 29 342-370 4-32 (208)
222 2ixe_A Antigen peptide transpo 95.7 0.0055 1.9E-07 64.0 4.0 38 338-375 43-80 (271)
223 2yyz_A Sugar ABC transporter, 95.7 0.0063 2.2E-07 66.1 4.5 38 338-375 27-64 (359)
224 2pze_A Cystic fibrosis transme 95.7 0.0057 1.9E-07 62.2 3.9 38 338-375 32-69 (229)
225 2it1_A 362AA long hypothetical 95.7 0.0065 2.2E-07 66.1 4.5 38 338-375 27-64 (362)
226 3kl4_A SRP54, signal recogniti 95.7 0.16 5.4E-06 56.4 15.8 38 339-376 96-136 (433)
227 2if2_A Dephospho-COA kinase; a 95.7 0.0058 2E-07 60.5 3.8 27 342-369 3-29 (204)
228 3a00_A Guanylate kinase, GMP k 95.7 0.0053 1.8E-07 60.1 3.5 25 341-365 2-26 (186)
229 1nks_A Adenylate kinase; therm 95.7 0.0051 1.7E-07 60.0 3.3 24 342-365 3-26 (194)
230 2qi9_C Vitamin B12 import ATP- 95.7 0.0049 1.7E-07 63.5 3.3 37 338-375 24-60 (249)
231 3crm_A TRNA delta(2)-isopenten 95.7 0.0053 1.8E-07 65.4 3.6 31 341-371 6-36 (323)
232 2ihy_A ABC transporter, ATP-bi 95.7 0.0058 2E-07 64.1 3.9 38 338-375 45-82 (279)
233 1z47_A CYSA, putative ABC-tran 95.7 0.0066 2.2E-07 65.8 4.3 38 338-375 39-76 (355)
234 1vma_A Cell division protein F 95.7 0.079 2.7E-06 56.1 12.6 36 339-374 103-141 (306)
235 1v43_A Sugar-binding transport 95.7 0.007 2.4E-07 66.0 4.5 38 338-375 35-72 (372)
236 2onk_A Molybdate/tungstate ABC 95.7 0.0071 2.4E-07 61.9 4.3 35 341-375 25-59 (240)
237 2cbz_A Multidrug resistance-as 95.6 0.0041 1.4E-07 63.6 2.5 36 338-373 29-64 (237)
238 3d31_A Sulfate/molybdate ABC t 95.6 0.0059 2E-07 66.1 3.7 38 338-375 24-61 (348)
239 1lvg_A Guanylate kinase, GMP k 95.6 0.006 2E-07 60.5 3.5 27 339-365 3-29 (198)
240 2z0h_A DTMP kinase, thymidylat 95.6 0.0089 3E-07 58.6 4.7 31 342-372 2-35 (197)
241 2yz2_A Putative ABC transporte 95.6 0.0066 2.3E-07 63.2 4.0 38 338-375 31-68 (266)
242 2yvu_A Probable adenylyl-sulfa 95.6 0.0073 2.5E-07 58.9 4.0 28 338-365 11-38 (186)
243 3ney_A 55 kDa erythrocyte memb 95.6 0.0098 3.3E-07 58.8 4.9 28 338-365 17-44 (197)
244 4g1u_C Hemin import ATP-bindin 95.6 0.0049 1.7E-07 64.2 2.9 38 338-375 35-72 (266)
245 2gza_A Type IV secretion syste 95.6 0.0098 3.4E-07 64.8 5.3 37 339-375 174-210 (361)
246 1g29_1 MALK, maltose transport 95.6 0.0075 2.6E-07 65.8 4.3 38 338-375 27-64 (372)
247 1z6g_A Guanylate kinase; struc 95.6 0.0068 2.3E-07 61.1 3.7 27 338-364 21-47 (218)
248 2oap_1 GSPE-2, type II secreti 95.5 0.0098 3.4E-07 67.8 5.3 35 339-373 259-293 (511)
249 2bdt_A BH3686; alpha-beta prot 95.5 0.0052 1.8E-07 60.1 2.6 24 341-364 3-26 (189)
250 1oxx_K GLCV, glucose, ABC tran 95.4 0.006 2E-07 66.2 3.0 38 338-375 29-66 (353)
251 1uf9_A TT1252 protein; P-loop, 95.4 0.0085 2.9E-07 59.1 3.9 30 339-369 7-36 (203)
252 1rj9_A FTSY, signal recognitio 95.4 0.007 2.4E-07 64.3 3.3 33 339-371 101-133 (304)
253 3cmu_A Protein RECA, recombina 95.4 0.018 6.3E-07 74.6 7.7 83 338-421 1079-1173(2050)
254 1q3t_A Cytidylate kinase; nucl 95.4 0.011 3.6E-07 60.3 4.6 32 338-369 14-45 (236)
255 3a8t_A Adenylate isopentenyltr 95.4 0.0052 1.8E-07 65.7 2.3 32 339-370 39-70 (339)
256 1p9r_A General secretion pathw 95.4 0.011 3.6E-07 65.7 4.8 30 338-367 165-194 (418)
257 2grj_A Dephospho-COA kinase; T 95.4 0.01 3.5E-07 58.5 4.2 30 341-370 13-42 (192)
258 1s96_A Guanylate kinase, GMP k 95.4 0.0092 3.1E-07 60.2 3.9 28 338-365 14-41 (219)
259 3tui_C Methionine import ATP-b 95.4 0.01 3.5E-07 64.3 4.5 38 338-375 52-89 (366)
260 3b9q_A Chloroplast SRP recepto 95.4 0.013 4.6E-07 62.0 5.3 28 338-365 98-125 (302)
261 1u94_A RECA protein, recombina 95.3 0.04 1.4E-06 59.7 9.1 38 338-375 61-101 (356)
262 4gp7_A Metallophosphoesterase; 95.3 0.0097 3.3E-07 57.4 3.8 22 339-360 8-29 (171)
263 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.0097 3.3E-07 59.8 3.9 27 338-364 21-47 (235)
264 4a74_A DNA repair and recombin 95.3 0.0078 2.7E-07 60.6 3.1 27 338-364 23-49 (231)
265 2ehv_A Hypothetical protein PH 95.3 0.0092 3.1E-07 60.9 3.6 25 338-362 28-52 (251)
266 1uj2_A Uridine-cytidine kinase 95.2 0.012 4.1E-07 60.6 4.4 28 340-367 22-49 (252)
267 1xx6_A Thymidine kinase; NESG, 95.2 0.06 2.1E-06 52.9 9.3 35 338-372 6-43 (191)
268 2iut_A DNA translocase FTSK; n 95.2 0.033 1.1E-06 63.7 8.4 72 410-495 346-420 (574)
269 3nh6_A ATP-binding cassette SU 95.2 0.0084 2.9E-07 63.6 3.1 38 338-375 78-115 (306)
270 1vht_A Dephospho-COA kinase; s 95.2 0.012 4.2E-07 58.9 4.1 29 340-369 4-32 (218)
271 2ghi_A Transport protein; mult 95.1 0.011 3.9E-07 61.2 3.8 37 338-375 44-80 (260)
272 1m7g_A Adenylylsulfate kinase; 95.1 0.011 3.7E-07 59.1 3.5 35 338-372 23-61 (211)
273 2jeo_A Uridine-cytidine kinase 95.1 0.011 3.9E-07 60.5 3.7 29 338-366 23-51 (245)
274 1w36_D RECD, exodeoxyribonucle 95.1 0.021 7.3E-07 66.7 6.4 25 340-364 164-188 (608)
275 1xp8_A RECA protein, recombina 95.1 0.049 1.7E-06 59.3 8.9 84 338-421 72-166 (366)
276 2d2e_A SUFC protein; ABC-ATPas 95.1 0.0087 3E-07 61.7 2.8 38 338-375 27-66 (250)
277 2v9p_A Replication protein E1; 95.1 0.012 4.2E-07 62.2 4.0 27 338-364 124-150 (305)
278 2h92_A Cytidylate kinase; ross 95.1 0.015 5E-07 58.3 4.3 30 340-369 3-32 (219)
279 2pjz_A Hypothetical protein ST 95.1 0.011 3.7E-07 61.4 3.5 35 340-375 30-64 (263)
280 3lnc_A Guanylate kinase, GMP k 95.1 0.0082 2.8E-07 60.8 2.5 28 338-365 25-53 (231)
281 3foz_A TRNA delta(2)-isopenten 95.1 0.011 3.8E-07 62.3 3.5 31 339-369 9-39 (316)
282 1n0w_A DNA repair protein RAD5 95.1 0.016 5.5E-07 58.8 4.7 26 338-363 22-47 (243)
283 2qt1_A Nicotinamide riboside k 95.0 0.0083 2.8E-07 59.6 2.4 36 338-374 19-54 (207)
284 3gd7_A Fusion complex of cysti 95.0 0.01 3.5E-07 65.1 3.2 37 338-375 45-81 (390)
285 2bbs_A Cystic fibrosis transme 95.0 0.01 3.4E-07 62.6 2.9 36 338-373 62-97 (290)
286 2v3c_C SRP54, signal recogniti 95.0 0.07 2.4E-06 59.4 9.8 36 340-375 99-137 (432)
287 3e70_C DPA, signal recognition 94.9 0.026 9E-07 60.5 6.1 28 338-365 127-154 (328)
288 3tqc_A Pantothenate kinase; bi 94.9 0.031 1E-06 59.7 6.5 37 340-376 92-133 (321)
289 2nq2_C Hypothetical ABC transp 94.9 0.014 4.7E-07 60.3 3.6 35 338-372 29-63 (253)
290 2zu0_C Probable ATP-dependent 94.9 0.011 3.9E-07 61.4 3.0 38 338-375 44-83 (267)
291 3exa_A TRNA delta(2)-isopenten 94.8 0.011 3.8E-07 62.4 2.7 27 340-366 3-29 (322)
292 3aez_A Pantothenate kinase; tr 94.8 0.014 4.9E-07 62.1 3.6 28 338-365 88-115 (312)
293 3fdi_A Uncharacterized protein 94.8 0.02 6.8E-07 56.8 4.4 30 340-369 6-35 (201)
294 3b85_A Phosphate starvation-in 94.8 0.016 5.6E-07 57.8 3.7 25 339-363 21-45 (208)
295 2dr3_A UPF0273 protein PH0284; 94.7 0.028 9.6E-07 57.0 5.6 35 338-372 21-58 (247)
296 2ged_A SR-beta, signal recogni 94.7 0.026 9E-07 54.8 5.0 27 338-364 46-72 (193)
297 1vt4_I APAF-1 related killer D 94.7 0.052 1.8E-06 66.1 8.2 59 315-378 130-194 (1221)
298 1cr0_A DNA primase/helicase; R 94.6 0.018 6.3E-07 60.6 3.8 27 338-364 33-59 (296)
299 1ex7_A Guanylate kinase; subst 94.6 0.025 8.5E-07 55.4 4.4 27 342-368 3-29 (186)
300 2j9r_A Thymidine kinase; TK1, 94.5 0.14 4.9E-06 50.9 9.8 35 338-372 26-63 (214)
301 1a7j_A Phosphoribulokinase; tr 94.5 0.021 7.2E-07 60.2 4.0 39 339-377 4-45 (290)
302 4eaq_A DTMP kinase, thymidylat 94.5 0.021 7.2E-07 57.9 3.8 28 339-366 25-52 (229)
303 1sq5_A Pantothenate kinase; P- 94.5 0.019 6.3E-07 61.2 3.5 28 338-365 78-105 (308)
304 3d3q_A TRNA delta(2)-isopenten 94.5 0.018 6.1E-07 61.8 3.3 33 341-375 8-40 (340)
305 2yhs_A FTSY, cell division pro 94.4 0.025 8.6E-07 63.5 4.5 28 338-365 291-318 (503)
306 1nlf_A Regulatory protein REPA 94.4 0.021 7.3E-07 59.6 3.6 27 338-364 28-54 (279)
307 3gmt_A Adenylate kinase; ssgci 94.3 0.028 9.6E-07 56.8 4.2 29 341-369 9-37 (230)
308 2qmh_A HPR kinase/phosphorylas 94.3 0.02 6.8E-07 56.3 2.9 27 339-365 33-59 (205)
309 2f1r_A Molybdopterin-guanine d 94.3 0.015 5.1E-07 56.2 2.0 35 341-375 3-40 (171)
310 2f6r_A COA synthase, bifunctio 94.3 0.026 8.8E-07 59.2 4.0 27 341-368 76-102 (281)
311 3zvl_A Bifunctional polynucleo 94.3 0.017 5.9E-07 64.2 2.8 28 339-366 257-284 (416)
312 3sop_A Neuronal-specific septi 94.3 0.022 7.4E-07 59.4 3.4 34 342-375 4-37 (270)
313 1ltq_A Polynucleotide kinase; 94.2 0.021 7.1E-07 60.3 3.2 24 341-364 3-26 (301)
314 1gtv_A TMK, thymidylate kinase 94.2 0.012 3.9E-07 58.7 1.0 26 342-367 2-27 (214)
315 2dpy_A FLII, flagellum-specifi 94.2 0.035 1.2E-06 62.0 5.0 38 338-375 155-192 (438)
316 2ius_A DNA translocase FTSK; n 94.2 0.065 2.2E-06 60.7 7.3 41 456-496 332-375 (512)
317 2obl_A ESCN; ATPase, hydrolase 94.2 0.037 1.2E-06 59.8 5.0 36 338-373 69-104 (347)
318 1j8m_F SRP54, signal recogniti 94.1 0.38 1.3E-05 50.6 12.7 36 340-375 98-136 (297)
319 3llm_A ATP-dependent RNA helic 94.1 0.053 1.8E-06 55.0 5.9 22 340-361 76-97 (235)
320 4f4c_A Multidrug resistance pr 94.1 0.1 3.6E-06 66.4 9.7 37 339-375 443-479 (1321)
321 1x6v_B Bifunctional 3'-phospho 94.1 0.037 1.3E-06 64.2 5.1 74 706-784 446-523 (630)
322 1zu4_A FTSY; GTPase, signal re 94.1 0.13 4.4E-06 54.8 9.0 37 338-374 103-142 (320)
323 2z43_A DNA repair and recombin 94.0 0.048 1.6E-06 58.4 5.6 27 338-364 105-131 (324)
324 4b3f_X DNA-binding protein smu 94.0 0.068 2.3E-06 63.0 7.3 34 341-374 206-242 (646)
325 1w4r_A Thymidine kinase; type 93.9 0.1 3.6E-06 51.1 7.2 34 339-372 19-55 (195)
326 3eph_A TRNA isopentenyltransfe 93.9 0.025 8.6E-07 61.9 3.0 28 341-368 3-30 (409)
327 2zts_A Putative uncharacterize 93.8 0.062 2.1E-06 54.5 5.8 37 338-374 28-68 (251)
328 1xjc_A MOBB protein homolog; s 93.8 0.068 2.3E-06 51.3 5.6 34 340-373 4-40 (169)
329 3b5x_A Lipid A export ATP-bind 93.8 0.022 7.6E-07 66.2 2.6 38 338-375 367-404 (582)
330 1c9k_A COBU, adenosylcobinamid 93.7 0.024 8.3E-07 55.0 2.3 31 343-374 2-32 (180)
331 1pzn_A RAD51, DNA repair and r 93.7 0.043 1.5E-06 59.4 4.5 27 338-364 129-155 (349)
332 1v5w_A DMC1, meiotic recombina 93.6 0.059 2E-06 58.2 5.4 27 338-364 120-146 (343)
333 3kta_A Chromosome segregation 93.6 0.042 1.4E-06 53.1 3.8 25 342-366 28-52 (182)
334 3cmw_A Protein RECA, recombina 93.5 0.12 3.9E-06 66.5 8.5 38 338-375 730-770 (1706)
335 3hdt_A Putative kinase; struct 93.4 0.046 1.6E-06 55.1 3.8 30 340-369 14-43 (223)
336 3b60_A Lipid A export ATP-bind 93.4 0.043 1.5E-06 63.8 4.0 37 339-375 368-404 (582)
337 2yl4_A ATP-binding cassette SU 93.2 0.045 1.5E-06 63.8 3.9 38 338-375 368-405 (595)
338 1np6_A Molybdopterin-guanine d 93.1 0.056 1.9E-06 52.3 3.7 34 340-373 6-42 (174)
339 3qf4_B Uncharacterized ABC tra 93.1 0.05 1.7E-06 63.4 4.0 38 338-375 379-416 (598)
340 2xxa_A Signal recognition part 93.0 0.93 3.2E-05 50.3 14.0 39 339-377 99-141 (433)
341 3qf4_A ABC transporter, ATP-bi 92.9 0.026 8.8E-07 65.7 1.3 38 339-376 368-405 (587)
342 3p32_A Probable GTPase RV1496/ 92.9 0.18 6E-06 54.7 7.8 36 339-374 78-116 (355)
343 1tq4_A IIGP1, interferon-induc 92.9 0.045 1.5E-06 60.4 3.1 43 319-365 52-94 (413)
344 1lw7_A Transcriptional regulat 92.9 0.048 1.6E-06 59.4 3.3 29 340-368 170-198 (365)
345 2npi_A Protein CLP1; CLP1-PCF1 92.9 0.044 1.5E-06 61.6 3.0 27 338-364 136-162 (460)
346 1m8p_A Sulfate adenylyltransfe 92.8 0.095 3.2E-06 60.5 5.8 34 339-372 395-432 (573)
347 2qm8_A GTPase/ATPase; G protei 92.8 0.057 1.9E-06 58.1 3.6 27 338-364 53-79 (337)
348 3bh0_A DNAB-like replicative h 92.7 0.1 3.6E-06 55.5 5.6 27 338-364 66-92 (315)
349 2fwr_A DNA repair protein RAD2 92.7 0.46 1.6E-05 53.3 11.1 32 341-372 109-140 (472)
350 3cr8_A Sulfate adenylyltranfer 92.6 0.041 1.4E-06 63.2 2.4 29 338-366 367-395 (552)
351 2krk_A 26S protease regulatory 92.6 0.087 3E-06 44.4 3.8 57 482-554 8-64 (86)
352 1g8f_A Sulfate adenylyltransfe 92.6 0.065 2.2E-06 60.8 4.0 28 339-366 394-421 (511)
353 3lda_A DNA repair protein RAD5 92.6 0.055 1.9E-06 59.6 3.2 27 338-364 176-202 (400)
354 3tqf_A HPR(Ser) kinase; transf 92.6 0.057 2E-06 51.7 2.9 25 339-363 15-39 (181)
355 4a82_A Cystic fibrosis transme 92.6 0.042 1.4E-06 63.8 2.4 38 338-375 365-402 (578)
356 2wsm_A Hydrogenase expression/ 92.6 0.11 3.6E-06 51.8 5.1 27 340-366 30-56 (221)
357 3vkw_A Replicase large subunit 92.6 0.13 4.6E-06 56.9 6.3 91 338-435 159-258 (446)
358 2j37_W Signal recognition part 92.5 0.14 4.9E-06 57.9 6.6 38 339-376 100-140 (504)
359 3v9p_A DTMP kinase, thymidylat 92.5 0.073 2.5E-06 53.8 3.8 27 339-365 24-50 (227)
360 4edh_A DTMP kinase, thymidylat 92.5 0.068 2.3E-06 53.5 3.5 28 339-366 5-32 (213)
361 2gxq_A Heat resistant RNA depe 92.4 0.2 6.7E-06 49.2 6.8 23 341-363 39-62 (207)
362 3kw6_A 26S protease regulatory 92.4 0.13 4.6E-06 42.2 4.7 55 483-554 1-56 (78)
363 2axn_A 6-phosphofructo-2-kinas 92.4 0.084 2.9E-06 60.3 4.5 25 341-365 36-60 (520)
364 1qde_A EIF4A, translation init 92.4 0.36 1.2E-05 48.0 8.8 16 341-356 52-67 (224)
365 3tmk_A Thymidylate kinase; pho 92.3 0.13 4.5E-06 51.4 5.4 33 339-371 4-36 (216)
366 3io5_A Recombination and repai 92.3 0.099 3.4E-06 55.2 4.5 26 338-364 27-52 (333)
367 2f9l_A RAB11B, member RAS onco 92.3 0.067 2.3E-06 52.4 3.1 23 342-364 7-29 (199)
368 1oix_A RAS-related protein RAB 92.3 0.064 2.2E-06 52.3 2.9 23 342-364 31-53 (191)
369 3lv8_A DTMP kinase, thymidylat 92.2 0.082 2.8E-06 53.7 3.7 28 338-365 25-52 (236)
370 1vec_A ATP-dependent RNA helic 92.2 0.6 2E-05 45.6 10.1 18 341-358 41-58 (206)
371 2ocp_A DGK, deoxyguanosine kin 92.2 0.069 2.4E-06 54.3 3.2 26 340-365 2-27 (241)
372 1tf7_A KAIC; homohexamer, hexa 92.1 0.059 2E-06 61.8 2.8 27 338-364 37-65 (525)
373 3euj_A Chromosome partition pr 92.0 0.058 2E-06 60.7 2.6 35 341-375 30-64 (483)
374 1nrj_B SR-beta, signal recogni 92.0 0.095 3.2E-06 52.0 3.9 27 338-364 10-36 (218)
375 1u0l_A Probable GTPase ENGC; p 91.9 0.059 2E-06 57.0 2.4 34 340-373 169-202 (301)
376 2r6a_A DNAB helicase, replicat 91.7 0.17 5.7E-06 56.8 5.9 36 338-373 201-240 (454)
377 3ozx_A RNAse L inhibitor; ATP 91.6 0.07 2.4E-06 61.2 2.7 35 338-372 292-326 (538)
378 2i1q_A DNA repair and recombin 91.5 0.078 2.7E-06 56.5 2.8 27 338-364 96-122 (322)
379 2dyk_A GTP-binding protein; GT 91.5 0.093 3.2E-06 48.9 3.0 22 342-363 3-24 (161)
380 1ls1_A Signal recognition part 91.4 0.16 5.4E-06 53.5 5.0 36 339-374 97-135 (295)
381 2vp4_A Deoxynucleoside kinase; 91.4 0.063 2.1E-06 54.3 1.8 26 338-363 18-43 (230)
382 2wji_A Ferrous iron transport 91.3 0.096 3.3E-06 49.5 2.9 21 342-362 5-25 (165)
383 2rcn_A Probable GTPase ENGC; Y 91.3 0.11 3.6E-06 56.3 3.5 27 339-365 214-240 (358)
384 1yqt_A RNAse L inhibitor; ATP- 91.3 0.091 3.1E-06 60.3 3.2 28 338-365 45-72 (538)
385 4tmk_A Protein (thymidylate ki 91.3 0.12 4.2E-06 51.5 3.8 27 339-365 2-28 (213)
386 2qag_B Septin-6, protein NEDD5 91.3 0.094 3.2E-06 57.9 3.2 26 338-363 38-65 (427)
387 4a1f_A DNAB helicase, replicat 91.2 0.18 6.3E-06 54.0 5.3 36 338-373 44-82 (338)
388 1tf7_A KAIC; homohexamer, hexa 91.2 0.11 3.6E-06 59.6 3.7 27 338-364 279-305 (525)
389 2zej_A Dardarin, leucine-rich 91.2 0.086 3E-06 50.9 2.5 21 342-362 4-24 (184)
390 2lkc_A Translation initiation 91.1 0.15 5.1E-06 48.4 4.1 25 338-362 6-30 (178)
391 2q6t_A DNAB replication FORK h 91.1 0.2 6.8E-06 56.0 5.7 36 338-373 198-237 (444)
392 3ld9_A DTMP kinase, thymidylat 91.1 0.13 4.3E-06 51.9 3.6 29 338-366 19-47 (223)
393 2yv5_A YJEQ protein; hydrolase 91.0 0.076 2.6E-06 56.2 2.1 27 340-367 165-191 (302)
394 2www_A Methylmalonic aciduria 91.0 0.12 4E-06 55.9 3.6 26 339-364 73-98 (349)
395 1p5z_B DCK, deoxycytidine kina 91.0 0.049 1.7E-06 56.3 0.5 27 339-365 23-49 (263)
396 1pui_A ENGB, probable GTP-bind 91.0 0.051 1.7E-06 53.6 0.6 26 338-363 24-49 (210)
397 1f2t_A RAD50 ABC-ATPase; DNA d 90.9 0.13 4.5E-06 48.1 3.5 24 341-364 24-47 (149)
398 1z2a_A RAS-related protein RAB 90.9 0.13 4.3E-06 48.3 3.3 23 341-363 6-28 (168)
399 3iuy_A Probable ATP-dependent 90.9 0.42 1.4E-05 47.7 7.4 19 340-358 57-75 (228)
400 3thx_A DNA mismatch repair pro 90.8 0.35 1.2E-05 58.8 7.8 23 340-362 662-684 (934)
401 2gj8_A MNME, tRNA modification 90.8 0.11 3.6E-06 49.7 2.7 24 340-363 4-27 (172)
402 1kao_A RAP2A; GTP-binding prot 90.8 0.13 4.6E-06 47.9 3.3 22 342-363 5-26 (167)
403 1hv8_A Putative ATP-dependent 90.7 0.59 2E-05 49.9 8.9 23 341-363 45-67 (367)
404 2wjg_A FEOB, ferrous iron tran 90.7 0.12 4E-06 49.8 3.0 22 341-362 8-29 (188)
405 3thx_B DNA mismatch repair pro 90.7 0.22 7.6E-06 60.4 5.9 25 339-363 672-696 (918)
406 2ce2_X GTPase HRAS; signaling 90.5 0.13 4.5E-06 47.8 3.1 22 342-363 5-26 (166)
407 3ice_A Transcription terminati 90.5 0.2 6.8E-06 54.3 4.7 29 336-364 170-198 (422)
408 2nzj_A GTP-binding protein REM 90.5 0.13 4.5E-06 48.6 3.0 22 341-362 5-26 (175)
409 2gk6_A Regulator of nonsense t 90.5 0.14 4.8E-06 60.0 3.8 24 341-364 196-219 (624)
410 4i1u_A Dephospho-COA kinase; s 90.4 0.16 5.5E-06 50.5 3.6 28 342-370 11-38 (210)
411 1u8z_A RAS-related protein RAL 90.4 0.15 5.1E-06 47.6 3.3 23 341-363 5-27 (168)
412 1z0j_A RAB-22, RAS-related pro 90.3 0.15 5.2E-06 47.8 3.3 23 342-364 8-30 (170)
413 1ek0_A Protein (GTP-binding pr 90.3 0.15 5.2E-06 47.8 3.3 22 342-363 5-26 (170)
414 1t9h_A YLOQ, probable GTPase E 90.3 0.047 1.6E-06 57.8 -0.4 29 339-367 172-200 (307)
415 1bif_A 6-phosphofructo-2-kinas 90.3 0.14 4.8E-06 57.7 3.5 26 340-365 39-64 (469)
416 1svi_A GTP-binding protein YSX 90.3 0.16 5.5E-06 49.1 3.5 25 338-362 21-45 (195)
417 1wms_A RAB-9, RAB9, RAS-relate 90.2 0.16 5.3E-06 48.2 3.3 23 341-363 8-30 (177)
418 3ozx_A RNAse L inhibitor; ATP 90.2 0.11 3.7E-06 59.6 2.5 30 337-366 22-51 (538)
419 2ffh_A Protein (FFH); SRP54, s 90.2 0.23 7.9E-06 54.9 5.1 37 339-375 97-136 (425)
420 3e2i_A Thymidine kinase; Zn-bi 90.2 0.33 1.1E-05 48.3 5.6 35 338-372 26-63 (219)
421 1z08_A RAS-related protein RAB 90.2 0.16 5.5E-06 47.7 3.3 22 342-363 8-29 (170)
422 1yqt_A RNAse L inhibitor; ATP- 90.1 0.1 3.4E-06 60.0 2.2 29 339-367 311-339 (538)
423 3j16_B RLI1P; ribosome recycli 90.1 0.13 4.6E-06 59.7 3.2 29 338-366 101-129 (608)
424 1ky3_A GTP-binding protein YPT 90.0 0.17 5.6E-06 48.2 3.3 23 341-363 9-31 (182)
425 1g16_A RAS-related protein SEC 90.0 0.15 5.3E-06 47.8 3.1 22 342-363 5-26 (170)
426 2aka_B Dynamin-1; fusion prote 90.0 0.24 8.2E-06 51.8 4.8 41 323-363 9-49 (299)
427 3q85_A GTP-binding protein REM 89.9 0.15 5.2E-06 47.9 2.9 21 342-362 4-24 (169)
428 1qhl_A Protein (cell division 89.9 0.038 1.3E-06 55.9 -1.4 25 343-367 30-54 (227)
429 3bor_A Human initiation factor 89.9 0.33 1.1E-05 48.9 5.7 18 341-358 68-85 (237)
430 1yrb_A ATP(GTP)binding protein 89.9 0.28 9.7E-06 50.1 5.2 35 340-374 14-50 (262)
431 2fn4_A P23, RAS-related protei 89.9 0.16 5.3E-06 48.3 3.0 24 340-363 9-32 (181)
432 1c1y_A RAS-related protein RAP 89.9 0.17 5.9E-06 47.2 3.3 22 342-363 5-26 (167)
433 3pqc_A Probable GTP-binding pr 89.8 0.18 6.3E-06 48.5 3.5 25 339-363 22-46 (195)
434 3bgw_A DNAB-like replicative h 89.8 0.25 8.5E-06 55.2 5.0 27 338-364 195-221 (444)
435 1r2q_A RAS-related protein RAB 89.8 0.18 6E-06 47.3 3.3 22 342-363 8-29 (170)
436 2p67_A LAO/AO transport system 89.8 0.27 9.3E-06 52.8 5.1 27 338-364 54-80 (341)
437 1r8s_A ADP-ribosylation factor 89.8 0.18 6.1E-06 47.1 3.3 23 342-364 2-24 (164)
438 1upt_A ARL1, ADP-ribosylation 89.7 0.18 6.1E-06 47.4 3.3 23 340-362 7-29 (171)
439 2erx_A GTP-binding protein DI- 89.7 0.17 6E-06 47.4 3.2 21 342-362 5-25 (172)
440 4ag6_A VIRB4 ATPase, type IV s 89.6 0.32 1.1E-05 53.3 5.6 35 339-373 34-71 (392)
441 3bc1_A RAS-related protein RAB 89.6 0.18 6.3E-06 48.4 3.3 23 341-363 12-34 (195)
442 3bk7_A ABC transporter ATP-bin 89.5 0.11 3.8E-06 60.4 1.9 29 339-367 381-409 (607)
443 3q72_A GTP-binding protein RAD 89.5 0.15 5.2E-06 47.7 2.5 20 342-361 4-23 (166)
444 4dzz_A Plasmid partitioning pr 89.3 0.63 2.1E-05 45.4 7.0 75 342-416 3-84 (206)
445 1m2o_B GTP-binding protein SAR 89.2 0.2 6.7E-06 48.6 3.2 23 340-362 23-45 (190)
446 1z0f_A RAB14, member RAS oncog 89.2 0.21 7.1E-06 47.3 3.3 24 341-364 16-39 (179)
447 2oil_A CATX-8, RAS-related pro 89.2 0.2 7E-06 48.4 3.3 22 342-363 27-48 (193)
448 3con_A GTPase NRAS; structural 89.2 0.2 7E-06 48.2 3.3 22 342-363 23-44 (190)
449 1m7b_A RND3/RHOE small GTP-bin 89.2 0.18 6.2E-06 48.4 2.9 23 341-363 8-30 (184)
450 2hxs_A RAB-26, RAS-related pro 89.1 0.2 6.9E-06 47.5 3.2 22 341-362 7-28 (178)
451 2y8e_A RAB-protein 6, GH09086P 89.1 0.2 6.7E-06 47.5 3.1 23 341-363 15-37 (179)
452 4dsu_A GTPase KRAS, isoform 2B 89.1 0.21 7.3E-06 47.7 3.3 22 342-363 6-27 (189)
453 2hf9_A Probable hydrogenase ni 89.1 0.21 7.1E-06 49.8 3.3 26 340-365 38-63 (226)
454 3fe2_A Probable ATP-dependent 89.1 0.62 2.1E-05 47.0 7.0 18 341-358 67-84 (242)
455 3bk7_A ABC transporter ATP-bin 89.0 0.16 5.3E-06 59.2 2.7 28 338-365 115-142 (607)
456 3g5u_A MCG1178, multidrug resi 89.0 0.16 5.4E-06 64.6 2.9 38 339-376 1058-1095(1284)
457 2efe_B Small GTP-binding prote 89.0 0.22 7.6E-06 47.3 3.3 23 341-363 13-35 (181)
458 2a9k_A RAS-related protein RAL 88.9 0.22 7.6E-06 47.5 3.3 23 341-363 19-41 (187)
459 3clv_A RAB5 protein, putative; 88.9 0.21 7.2E-06 48.3 3.2 24 340-363 7-30 (208)
460 2wjy_A Regulator of nonsense t 88.8 0.22 7.4E-06 59.9 3.8 24 341-364 372-395 (800)
461 2bme_A RAB4A, RAS-related prot 88.8 0.21 7.2E-06 47.8 3.1 23 341-363 11-33 (186)
462 2g6b_A RAS-related protein RAB 88.8 0.23 7.8E-06 47.2 3.3 23 341-363 11-33 (180)
463 3tw8_B RAS-related protein RAB 88.8 0.21 7.1E-06 47.4 3.0 22 341-362 10-31 (181)
464 3kkq_A RAS-related protein M-R 88.7 0.23 7.9E-06 47.4 3.3 23 341-363 19-41 (183)
465 3qks_A DNA double-strand break 88.7 0.24 8.2E-06 49.0 3.5 26 341-366 24-49 (203)
466 2gks_A Bifunctional SAT/APS ki 88.7 0.27 9.3E-06 56.4 4.4 34 339-372 371-407 (546)
467 3bwd_D RAC-like GTP-binding pr 88.7 0.27 9.3E-06 46.7 3.7 25 339-363 7-31 (182)
468 3ihw_A Centg3; RAS, centaurin, 88.6 0.23 7.7E-06 48.0 3.2 22 342-363 22-43 (184)
469 1mh1_A RAC1; GTP-binding, GTPa 88.6 0.24 8.2E-06 47.3 3.3 22 342-363 7-28 (186)
470 2zj8_A DNA helicase, putative 88.6 0.84 2.9E-05 54.3 8.7 19 340-358 39-57 (720)
471 2gf9_A RAS-related protein RAB 88.5 0.24 8.3E-06 47.7 3.3 22 342-363 24-45 (189)
472 3t1o_A Gliding protein MGLA; G 88.5 0.23 7.9E-06 47.9 3.1 23 342-364 16-38 (198)
473 3k53_A Ferrous iron transport 88.5 0.21 7.2E-06 51.7 3.0 23 341-363 4-26 (271)
474 3c5c_A RAS-like protein 12; GD 88.5 0.24 8.1E-06 47.9 3.2 22 342-363 23-44 (187)
475 2iwr_A Centaurin gamma 1; ANK 88.5 0.19 6.4E-06 47.8 2.4 23 341-363 8-30 (178)
476 1mky_A Probable GTP-binding pr 88.5 0.47 1.6E-05 52.9 6.0 23 341-363 181-203 (439)
477 2iw3_A Elongation factor 3A; a 88.4 0.17 5.8E-06 61.6 2.5 38 338-375 697-734 (986)
478 1q57_A DNA primase/helicase; d 88.3 0.34 1.2E-05 55.0 4.9 28 338-365 240-267 (503)
479 2cxx_A Probable GTP-binding pr 88.3 0.21 7.2E-06 47.9 2.7 22 342-363 3-24 (190)
480 2bov_A RAla, RAS-related prote 88.3 0.23 7.9E-06 48.4 3.0 24 340-363 14-37 (206)
481 3j16_B RLI1P; ribosome recycli 88.3 0.21 7.2E-06 58.0 3.1 27 340-366 378-404 (608)
482 2atv_A RERG, RAS-like estrogen 88.2 0.27 9.1E-06 47.8 3.3 24 340-363 28-51 (196)
483 3tkl_A RAS-related protein RAB 88.1 0.26 9E-06 47.5 3.3 22 342-363 18-39 (196)
484 2fg5_A RAB-22B, RAS-related pr 88.1 0.25 8.6E-06 47.8 3.1 23 341-363 24-46 (192)
485 1fzq_A ADP-ribosylation factor 88.0 0.24 8.1E-06 47.6 2.9 25 339-363 15-39 (181)
486 2fh5_B SR-beta, signal recogni 88.0 0.28 9.6E-06 48.3 3.4 25 339-363 6-30 (214)
487 1zd9_A ADP-ribosylation factor 88.0 0.27 9.4E-06 47.3 3.3 22 342-363 24-45 (188)
488 1z06_A RAS-related protein RAB 88.0 0.28 9.6E-06 47.2 3.3 23 341-363 21-43 (189)
489 3t5g_A GTP-binding protein RHE 88.0 0.26 8.8E-06 47.0 3.1 22 341-362 7-28 (181)
490 2p6r_A Afuhel308 helicase; pro 88.0 0.53 1.8E-05 55.8 6.4 19 340-358 40-58 (702)
491 3dz8_A RAS-related protein RAB 87.9 0.24 8.4E-06 47.8 2.9 23 342-364 25-47 (191)
492 1x3s_A RAS-related protein RAB 87.9 0.28 9.5E-06 47.3 3.3 22 342-363 17-38 (195)
493 2a5j_A RAS-related protein RAB 87.9 0.28 9.6E-06 47.4 3.3 22 342-363 23-44 (191)
494 4a4z_A Antiviral helicase SKI2 87.9 1.7 5.7E-05 53.6 10.9 43 394-436 131-176 (997)
495 1w1w_A Structural maintenance 87.9 0.32 1.1E-05 54.1 4.2 29 339-367 25-53 (430)
496 3g5u_A MCG1178, multidrug resi 87.8 0.24 8.2E-06 62.9 3.4 37 339-375 415-451 (1284)
497 1vg8_A RAS-related protein RAB 87.8 0.29 9.8E-06 47.8 3.3 24 341-364 9-32 (207)
498 3reg_A RHO-like small GTPase; 87.8 0.28 9.7E-06 47.4 3.3 23 341-363 24-46 (194)
499 2cjw_A GTP-binding protein GEM 87.8 0.27 9.2E-06 47.8 3.1 22 342-363 8-29 (192)
500 2p5s_A RAS and EF-hand domain 87.8 0.29 9.8E-06 47.7 3.3 24 340-363 28-51 (199)
No 1
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=100.00 E-value=1e-77 Score=698.86 Aligned_cols=534 Identities=49% Similarity=0.842 Sum_probs=460.5
Q ss_pred ChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhccccc
Q 003349 237 DEDDLVALERKMQSAGMPSNIWKHVQKELRRLKKMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHY 316 (828)
Q Consensus 237 ~~~~~~~~~~~l~~~~lp~~a~~~~~~e~~~l~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~ 316 (828)
...+++++++++.+.++|+++.+.+.+++++++.+.+.+.++..+++|+++++.+||...... ..++..+++.|+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~e~~~~~~~l~~~~~lp~~~~~~~-~~~~~~~~~~l~~di~ 84 (543)
T 3m6a_A 6 KTGEVQTLTEKIEEAGMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDD-KLDLKEAGRLLDEEHH 84 (543)
T ss_dssp -CCTTTHHHHHHHSSSCCCHHHHHHHHHHHSSCCCSSSCTTTTHHHHHHHHHHHSCSSCCCCC-CCCTTTGGGTHHHHCS
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCCCchHhHHHHHHHHHhcCCCCccccc-cccHHHHHHHHHHHhc
Confidence 346788999999999999999999999999999999999999999999999999999988876 7788888999999999
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcch
Q 003349 317 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGR 396 (828)
Q Consensus 317 G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~ 396 (828)
|++++++.+.+++.........+++++||+||||||||++|+++|..++.+++.+++++..+.+.+.++.+.|+|+.++.
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~ 164 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGR 164 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------C
T ss_pred cHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchH
Confidence 99999999999888877766668889999999999999999999999999999999999888888888888999999999
Q ss_pred HHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCc
Q 003349 397 LIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDR 476 (828)
Q Consensus 397 l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R 476 (828)
+.+.|..+...++|+||||||++.++.+++.++.|+++|++.+...|.+++.+.++++++++||+|||.++.++++|++|
T Consensus 165 ~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R 244 (543)
T 3m6a_A 165 IIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDR 244 (543)
T ss_dssp HHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHH
T ss_pred HHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhh
Confidence 99999988877889999999999998777778999999999988999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 003349 477 MEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQ 556 (828)
Q Consensus 477 ~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~ 556 (828)
|++|.|++|+.+++.+|++.++.++.+..+++....+.++++++..++..|++..|+|.|++.|+++|+.++.++++..
T Consensus 245 ~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~- 323 (543)
T 3m6a_A 245 MEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEE- 323 (543)
T ss_dssp EEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred cceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999888889999999999999999999999999999999999888776540
Q ss_pred hhcCCCCccccccCCccccccccCCCeeEEeeccCCCcccccccccccCcceeecccchhhccCCCccCchhhhhhcCCC
Q 003349 557 EQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAP 636 (828)
Q Consensus 557 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~l~~~~~~~~~~~~~~~~~ 636 (828)
...+.|+.++++++++++.+.. ....+...+
T Consensus 324 ------------------------------------------------~~~~~It~~~l~~~Lg~~~~~~-e~~~~~~~~ 354 (543)
T 3m6a_A 324 ------------------------------------------------RKRITVTEKNLQDFIGKRIFRY-GQAETEDQV 354 (543)
T ss_dssp ------------------------------------------------CSCCEECTTTTHHHHCSCCSCC-STTTCCCBS
T ss_pred ------------------------------------------------CcceecCHHHHHHHhCCcccCc-hhhhccccc
Confidence 1246799999999999999987 444456778
Q ss_pred ceeEEEEEeecCceEEEEEEEEEcCcceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCcccEEEEccCC
Q 003349 637 GISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAG 716 (828)
Q Consensus 637 G~v~g~~~~~~~g~~~~ie~~~~~g~~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~~~~~~dv~i~~~~~ 716 (828)
|.++|++|++.+|.+++||+.+++|.|++++||+++++||||.++|++++++.+..++. ...+|+++|||||+++|
T Consensus 355 g~v~g~a~~~~~g~~~~ve~~~~~g~~~~~~~G~~~~~~~es~~~a~~~v~~~~~~~g~----~~~~~~~~di~v~~~~g 430 (543)
T 3m6a_A 355 GVVTGLAYTTVGGDTLSIEVSLSPGKGKLILTGKLGDVMRESAQAAFSYVRSKTEELGI----EPDFHEKYDIHIHVPEG 430 (543)
T ss_dssp SEEEEEEEETTEEEEEEEEEEEESSCSCEEEEESCCHHHHHHHHHHHHHHTSSCGGGSS----CSSCTTTCEEEEEECTT
T ss_pred cccccccccCCCccceeeEEEeeCCCCceEEecCchHHHHHHHHHHHHHHHHHHHHcCC----CccccCCcceEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999987755442 22337899999999888
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccChhhhccChhhh
Q 003349 717 AVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAV 796 (828)
Q Consensus 717 ~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~~~~~~~~ 796 (828)
+++|+|||||||+|+||+|+++++|++++++|||||+|+|+|+||||+.+|+.+|.++|+++||+|.+|.+++..+|+.+
T Consensus 431 ~~~k~gpsa~l~ia~ai~s~~~~~~~~~~~~~~GEi~L~G~v~~v~g~~~~~~~a~~~g~~~~iiP~~n~~~~~~~~~~~ 510 (543)
T 3m6a_A 431 AVPKDGPAAGITMATALVSALTGRAVSREVGMTGEITLRGRVLPIGGLKEKALGAHRAGLTTIIAPKDNEKDIEDIPESV 510 (543)
T ss_dssp BCGGGGGGGHHHHHHHHHHHHTSCCBCTTCEECCEECTTCBEECCSCHHHHHHHHHHTTCSBEEEEGGGGGGGGGSCHHH
T ss_pred CCCCCCchhHHHHHHHHHHHccCCCCCCCEEEEEEEcCCceEEeeCCHHHHHHHHHHCCCCEEEECHHHHHHHHhhHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEcCCHHHHHHHHHcCCCCCCCC
Q 003349 797 LASLEIILAKRMEDVLEQAFEGGCPWRQH 825 (828)
Q Consensus 797 ~~~i~i~~v~~l~e~~~~~~~~~~~~~~~ 825 (828)
..+++|++|+|+.||++++|...+...||
T Consensus 511 ~~~~~i~~v~~l~e~~~~~~~~~~~~~~~ 539 (543)
T 3m6a_A 511 REGLTFILASHLDEVLEHALVGEKKLEHH 539 (543)
T ss_dssp HTSCBCCEESBHHHHHHHHBC--------
T ss_pred hCCCEEEEeCCHHHHHHHHHhccCccccc
Confidence 99999999999999999998877555444
No 2
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=100.00 E-value=1.7e-48 Score=460.37 Aligned_cols=352 Identities=23% Similarity=0.347 Sum_probs=266.6
Q ss_pred CcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccC-------CeeecCCCcEEEEecCCC--CCCCccccCceE
Q 003349 408 NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYL-------NVPFDLSKVIFVATANRA--QPIPPPLLDRME 478 (828)
Q Consensus 408 ~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~-------~~~~~~~~viiI~TtN~~--~~l~~aLl~R~~ 478 (828)
++++||||++.+.+.. ++.|+++|+..+......... ..++ ..++.||+|||+. ..++++|++||.
T Consensus 202 ~gvL~LDEi~~l~~~~----q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~-p~~~~vI~atn~~~~~~l~~~l~~R~~ 276 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKM----QQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV-PCDFVLVAAGNLDTVDKMHPALRSRIR 276 (604)
T ss_dssp TSEEEETTGGGSCHHH----HHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE-ECCCEEEEEECHHHHHHSCHHHHHHHH
T ss_pred CCEEEEechhhCCHHH----HHHHHHHHHcCcEEecccccccccccCCCCcc-ceeEEEEEecCHHHHhhcCHHHHHHhh
Confidence 4599999999997765 899999998654322110000 0111 2367899999987 689999999994
Q ss_pred ----EEEcCCC---CHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH----HHHHHHHHHHHH
Q 003349 479 ----VIELPGY---TPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN----LERNLAALARAA 547 (828)
Q Consensus 479 ----~i~~~~~---~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~----l~~~i~~l~~~a 547 (828)
.+.|+.. +.+....+++.. ... ....+ ....++++++..+++.|+++.|.|. ..|.+.++++.|
T Consensus 277 v~~i~i~l~~~~~~~~~~~~~~l~~~-~~~-~~~~~---~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A 351 (604)
T 3k1j_A 277 GYGYEVYMRTTMPDTIENRRKLVQFV-AQE-VKRDG---KIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAA 351 (604)
T ss_dssp HHSEEEECCSEEECCHHHHHHHHHHH-HHH-HHHHC---SSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHH
T ss_pred ccceEeeccccccCCHHHHHHHHHHH-HHH-Hhhcc---CcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHH
Confidence 4666543 344455555332 221 12111 2357999999999998888788664 357777788776
Q ss_pred HHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeeccCCCcccccccccccCcceeecccchhhccCCCccCch
Q 003349 548 AVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDR 627 (828)
Q Consensus 548 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~l~~~~~~~~ 627 (828)
...+..+ .. ..++. .++..+. .....++.+.++.|++.+.+..
T Consensus 352 ~~~A~~~--~~--------~~I~~------------------------edv~~A~--~~~~~i~~~~~e~~l~~~~~~~- 394 (604)
T 3k1j_A 352 GDIAVKK--GK--------KYVER------------------------EDVIEAV--KMAKPLEKQLADWYIERKKEYQ- 394 (604)
T ss_dssp HHHHHHT--TC--------SSBCH------------------------HHHHHHH--HHTCCHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHhc--Cc--------ccccH------------------------HHHHHHH--HhhhhhHHHHHHHHhccccccc-
Confidence 5433222 00 00000 0111110 1123466677888888775443
Q ss_pred hhhhhcCCCceeEEEEEeecC-ceEEEEEEEEEcCc----ceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCC
Q 003349 628 EAAERVAAPGISVGLVWTNFG-GEVQFVEATAMRGK----GELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMN 702 (828)
Q Consensus 628 ~~~~~~~~~G~v~g~~~~~~~-g~~~~ie~~~~~g~----~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~ 702 (828)
....+...+|.++|++|++.+ |.+++||+.+++|. |++++||+++++||||++++.+++++++ |
T Consensus 395 ~i~~~~~~~g~v~gla~~~~~~g~~~~ie~~~~~~~~~~~g~~~~~g~~~~~~~es~~~~~~~l~~~~-----------~ 463 (604)
T 3k1j_A 395 VIKTEGSEIGRVNGLAVIGEQSGIVLPIEAVVAPAASKEEGKIIVTGKLGEIAKEAVQNVSAIIKRYK-----------G 463 (604)
T ss_dssp CCCCSSEETTEEEEEEEETTTEEEEEEEEEEEEECSSSSBCCEEEESCBCHHHHHHHHHHHHHHHHHH-----------C
T ss_pred hhhccCcccEEEEEEEEECCCccEEEEEEEEEEeCCCCCCCEEEEecChHHHHHHHHHHHHHHHHhhh-----------c
Confidence 222335578999999999998 99999999998743 4699999999999999999999998653 3
Q ss_pred C-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEee
Q 003349 703 L-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVIL 781 (828)
Q Consensus 703 ~-~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~vii 781 (828)
+ |+++|||||+++|..+|+|||||||+|+||+|+++++|++++++|||||+|+|+|+||||+.+|+.+|.++|+++|||
T Consensus 464 ~~~~~~~i~i~~~~~~~~~~gpsa~l~~~~ai~sa~~~~~~~~~~~~~Gei~l~G~v~~v~g~~~k~~~a~~~G~~~~ii 543 (604)
T 3k1j_A 464 EDISRYDIHVQFLQTYEGVEGDAASISVATAVISALEGIPIRQDVAMTGSLSVRGEVLPIGGATPAIEAAIEAGIKMVII 543 (604)
T ss_dssp GGGGGEEEEEEETTCTTCBCSSTTHHHHHHHHHHHHHTCCEETTEEECCEECTTSBEECCSCHHHHHHHHHHHTCCEEEE
T ss_pred cCCCCCcEEEEEcCCcccCCCccchHHHHHHHHHHcCCCCCCCCeEEEEEecCCceEEeeCCHHHHHHHHHHcCCCEEEE
Confidence 4 789999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChhhhccChhhhhCCcEEEEcCCHHHHHHHHHcC
Q 003349 782 PERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEG 818 (828)
Q Consensus 782 P~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~~ 818 (828)
|.+|.+++. +|+++..+++|++|+|+.||++++|..
T Consensus 544 P~~n~~~~~-~~~~~~~~~~i~~v~~~~e~~~~~~~~ 579 (604)
T 3k1j_A 544 PKSNEKDVF-LSKDKAEKIQIFPVETIDEVLEIALEE 579 (604)
T ss_dssp EGGGGGGCC-CCHHHHTTCEEEEESBHHHHHHHHBCC
T ss_pred CHHHhhhhc-ccccccCCcEEEEeCCHHHHHHHHHhc
Confidence 999999987 888888899999999999999998863
No 3
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=100.00 E-value=8.3e-38 Score=312.77 Aligned_cols=185 Identities=51% Similarity=0.829 Sum_probs=169.8
Q ss_pred hhcCCCceeEEEEEeecCceEEEEEEEEEcCcceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCcccEE
Q 003349 631 ERVAAPGISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIH 710 (828)
Q Consensus 631 ~~~~~~G~v~g~~~~~~~g~~~~ie~~~~~g~~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~~~~~~dv~ 710 (828)
++...+|+++|++|++.+|.++.||+++++|.|.++++|+++++||||+++|++|+++++..++. ...+|+++|||
T Consensus 6 ~~~~~~G~v~gla~~~~~g~~v~IE~~~~~G~g~~~itG~~~~~~kES~~~a~s~~~~~~~~~g~----~~~~~~~~di~ 81 (200)
T 1rre_A 6 DNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGI----NPDFYEKRDIH 81 (200)
T ss_dssp ----CCEEEEEEEEETTEEEEEEEEEEEEECSSCEEEESSBCHHHHHHHHHHHHHHHHTHHHHTC----CTTTTTSEEEE
T ss_pred ccCCCcEEEEEEEEecCCCEEEEEEEEEeCCCceEEEecCchHHHHHHHHHHHHHHHHhHHhcCC----CcccCCcceEE
Confidence 34567899999999999999999999999999999999999999999999999999987765553 22347899999
Q ss_pred EEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccChhhhc
Q 003349 711 IHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLV 790 (828)
Q Consensus 711 i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n~~~~~ 790 (828)
||++++..+|+|||+|||+|+||+|++.++|++++++|||||+|+|+|+||+|+.+|+.+|.++||+++|+|.+|.+++.
T Consensus 82 vnl~~g~~~k~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~VrpV~Gi~~ki~~A~~~G~~~vivP~~N~~e~~ 161 (200)
T 1rre_A 82 VHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLE 161 (200)
T ss_dssp EECSSTTSCEESSTTHHHHHHHHHHHHHTCCBCTTEEECCEECTTCBEECCSCHHHHHHHHHHTTCCEEEEEGGGGGGGG
T ss_pred EEeCCccccCCCCcchHHHHHHHHHHcCCCCCCCCEEEEEEEcCCceEEeeCCHHHHHHHHHHcCCCEEEechHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cChhhhhCCcEEEEcCCHHHHHHHHHcCC
Q 003349 791 EVPAAVLASLEIILAKRMEDVLEQAFEGG 819 (828)
Q Consensus 791 ~~~~~~~~~i~i~~v~~l~e~~~~~~~~~ 819 (828)
++|+.+..+++|++|+|+.|+++++|...
T Consensus 162 ~~~~~~~~gi~v~~v~~l~ea~~~l~~~~ 190 (200)
T 1rre_A 162 EIPDNVIADLDIHPVKRIEEVLTLALQNE 190 (200)
T ss_dssp GSCHHHHHHSEEEEESBHHHHHHHHBSSC
T ss_pred hhHHhhcCCCEEEEcCCHHHHHHHHhhcc
Confidence 88888888999999999999999988644
No 4
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=310.11 Aligned_cols=184 Identities=45% Similarity=0.735 Sum_probs=168.5
Q ss_pred hhcCCCceeEEEEEeecCceEEEEEEEEE---------cCcceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q 003349 631 ERVAAPGISVGLVWTNFGGEVQFVEATAM---------RGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGM 701 (828)
Q Consensus 631 ~~~~~~G~v~g~~~~~~~g~~~~ie~~~~---------~g~~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~ 701 (828)
++...+|+++|++|++.||.++.||+++. +|.|.++++|+++++||||++++++|++++...+.. .
T Consensus 5 ~~~~~~G~v~GLa~t~~gg~~l~iE~~~~~~~~~~~~~~g~g~~~itG~~~~~~kES~~~a~s~~~~~~~~~~~-----~ 79 (207)
T 2x36_A 5 YDVTPPGVVMGLAWTAMGGSTLFVETSLRRPQDKDAKGDKDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAP-----A 79 (207)
T ss_dssp CSSCCTTEEEEEEEBSSSEEEEEEEEEESSCCC--------CEEEEESCCCHHHHHHHHHHHHHHHHHHHHHST-----T
T ss_pred cCCCCCeEEEEeEEEccCCeEEEEEEEEEecccccccCCCCCeEEEEeCchHHHHHHHHHHHHHHHhccccccc-----c
Confidence 34567899999999999999999999998 899999999999999999999999999987665542 2
Q ss_pred CC-CCcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEe
Q 003349 702 NL-LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVI 780 (828)
Q Consensus 702 ~~-~~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~vi 780 (828)
++ |+.+|||||++++..+|+|||+|||+|+||+|++.++|++++++|||||+|+|+|+||+|+.+|+.+|.++||+++|
T Consensus 80 ~~~~~~~di~vnl~~g~~~K~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~VrpV~Gi~~ki~~A~~~G~~~vi 159 (207)
T 2x36_A 80 NDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIV 159 (207)
T ss_dssp CCHHHHCEEEEECCSCBCTTTGGGGHHHHHHHHHHHHHTCCCCTTEEECCEECTTSBEECCSCHHHHHHHHHHTTCCEEE
T ss_pred cccCccceEEEEeCCcccCCCCCcchHHHHHHHHHHcCCCCCCCCEEEEEEECCCceEEeecCHHHHHHHHHHcCCCeEE
Confidence 34 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccChhhhccChhhhhCCcEEEEcCCHHHHHHHHHcCC
Q 003349 781 LPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 819 (828)
Q Consensus 781 iP~~n~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~~~ 819 (828)
+|.+|.+++..+|+++..+++|++|+|+.|+++++|...
T Consensus 160 vP~~N~~e~~~~~~~~~~gi~v~~v~~l~e~~~~l~~~~ 198 (207)
T 2x36_A 160 LPAENKKDFYDLAAFITEGLEVHFVEHYREIFDIAFPDE 198 (207)
T ss_dssp EEGGGHHHHHTSCHHHHTTCEEEEESBHHHHHHHHCTTS
T ss_pred ecchhHHHHhhhhHhhcCCCEEEECCCHHHHHHHHhccc
Confidence 999999999888988889999999999999999987643
No 5
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=100.00 E-value=3.4e-34 Score=285.00 Aligned_cols=176 Identities=32% Similarity=0.532 Sum_probs=157.1
Q ss_pred cCCCceeEEEEEeecC--ceEEEEEEEEEc----CcceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCCC-CC
Q 003349 633 VAAPGISVGLVWTNFG--GEVQFVEATAMR----GKGELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNL-LQ 705 (828)
Q Consensus 633 ~~~~G~v~g~~~~~~~--g~~~~ie~~~~~----g~~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~~-~~ 705 (828)
...+|+++|++|++.+ |.+++||+.+++ |.|++.++| ++||||++++++|+++++....... ...++ |+
T Consensus 3 ~~~~g~v~gla~~g~~~~g~~v~IEa~v~~~~~~g~g~~~~tG---~~~res~~~~~a~l~~~~~~~~~~~-~~~g~~~~ 78 (187)
T 1xhk_A 3 EPKVGVIYGLAVLGAGGIGDVTKIIVQILESKNPGTHLLNISG---DIAKHSITLASALSKKLVAEKKLPL-PKKDIDLN 78 (187)
T ss_dssp CCBTTEEEEEECCSSSSCCEEEEEEEEEEECSSCEEEEESSCH---HHHHHHHHHHHHHHHHHHHTTSSCC-CSSCCCST
T ss_pred CCceEEEEEEEEECCCCceEEEEEEEEEEcCCCCCCCceEEec---HHHHHHHHHHHHHHhhhhhcccccc-cccCCCCC
Confidence 3567999999999996 899999999988 446777787 9999999999999998765543211 13566 89
Q ss_pred cccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccC
Q 003349 706 GRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERN 785 (828)
Q Consensus 706 ~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n 785 (828)
++|||||+++++++|+|||+|||+|+|++|++.++|++++++|||||+|+|+|+||+|+.+|+.+|+++||++||+|.+|
T Consensus 79 ~~di~vn~~~g~~~k~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~V~pV~Gi~~ki~~A~~~G~~~viiP~~N 158 (187)
T 1xhk_A 79 NKEIYIQFSQSYSKIDGDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRVIIPEAN 158 (187)
T ss_dssp TEEEEEEESSCCCTTTGGGGHHHHHHHHHHHHHTCCBCSSEEECCEECTTCBEECCSCHHHHHHHHHHTTCSEEEEEGGG
T ss_pred CeeEEEEECCCCcCCcCchHHHHHHHHHHHHccCCCCCCCEEEEEEECCCceEEeeCCHHHHHHHHHHcCCCEEEeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccChhhhhCCcEEEEcCCHHHHHHHHHc
Q 003349 786 LKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 817 (828)
Q Consensus 786 ~~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~ 817 (828)
.+++... .+++|++|+|+.|+++++|.
T Consensus 159 ~~e~~~~-----~~i~v~~v~~l~ea~~~l~~ 185 (187)
T 1xhk_A 159 MIDVIET-----EGIEIIPVKTLDEIVPLVFD 185 (187)
T ss_dssp GGGCCCC-----CSSEEEEESBHHHHHHHHBC
T ss_pred hhhhccc-----CCcEEEEcCCHHHHHHHHhc
Confidence 9887633 49999999999999999864
No 6
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Probab=100.00 E-value=1.8e-34 Score=290.13 Aligned_cols=174 Identities=31% Similarity=0.462 Sum_probs=158.4
Q ss_pred cCCCceeEEEEEeecC-ceEEEEEEEEEc--Cc--ceEEEeeCCChHHHHHHHHHHHHHHHhhhhhhhhhhccCCC-CCc
Q 003349 633 VAAPGISVGLVWTNFG-GEVQFVEATAMR--GK--GELHLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNL-LQG 706 (828)
Q Consensus 633 ~~~~G~v~g~~~~~~~-g~~~~ie~~~~~--g~--~~~~~~G~~~~~~~es~~~a~~~~~~~~~~l~~~~~~~~~~-~~~ 706 (828)
...+|+++|++|++.+ |.++.||+.+.+ |. |+++++|+++++++||+++++++++.+ +++ |++
T Consensus 9 ~~~vg~v~gla~~g~~~g~~l~Iev~v~~s~g~~~p~~~~~G~~~~~~~es~~~v~a~l~~~-----------~g~~~~~ 77 (207)
T 1z0w_A 9 GYEVGRVNGLAVIGESAGIVLPIIAEVTPSMSKSEGRVIATGRLQEIAREAVMNVSAIIKKY-----------TGRDISN 77 (207)
T ss_dssp SEETTEEEEEEEETTTEEEEEEEEEEEEECC---CCCEECCSTTHHHHHHHHHHHHHHHHHH-----------HCCCGGG
T ss_pred CCceEEEEEEEEECCCCcEEEEEEEEEEecCCCCCCeEEEeCCchhhhHHHHHHHHHHHHHh-----------cCCCCCC
Confidence 4568999999999995 997777776654 55 899999999999999999999999643 355 899
Q ss_pred ccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecccCh
Q 003349 707 RDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNL 786 (828)
Q Consensus 707 ~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~~n~ 786 (828)
+|||||+++++++|+|||+|||+|+|++|++.++|++++++|||||+|+|+|+||||+.+|+.+|.++||+++|+|.+|.
T Consensus 78 ~di~vnl~~g~~~k~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~VrpV~Gi~~ki~~A~~~G~~~viiP~~N~ 157 (207)
T 1z0w_A 78 MDVHIQFVGTYEGVEGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPKDNI 157 (207)
T ss_dssp EEEEEEESSCCTTEECCTTBHHHHHHHHHHHHTCCEETTEEECCEECTTSBEECCSCHHHHHHHHHHTTCSEEEEEGGGG
T ss_pred ceEEEEEecccccccCCcchHHHHHHHHHHcCCCCCCCCEEEEEEECCCceEEeeCCHHHHHHHHHHcCCCEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccChhhhhCCcEEEEcCCHHHHHHHHHcC
Q 003349 787 KDLVEVPAAVLASLEIILAKRMEDVLEQAFEG 818 (828)
Q Consensus 787 ~~~~~~~~~~~~~i~i~~v~~l~e~~~~~~~~ 818 (828)
+++. +|+++..+++|++|+|+.||++++|.+
T Consensus 158 ~e~~-~~~~~~~~i~v~~v~~l~ea~~~l~~~ 188 (207)
T 1z0w_A 158 DDVL-LDAEHEGKIEVIPVSRINEVLEHVLED 188 (207)
T ss_dssp GGCC-CCTTTTTSSEEEEESBHHHHHHHHBCC
T ss_pred hhhc-cchhccCCcEEEEcCCHHHHHHHHhhc
Confidence 9987 788888899999999999999998764
No 7
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=99.96 E-value=5e-29 Score=261.20 Aligned_cols=191 Identities=24% Similarity=0.353 Sum_probs=167.5
Q ss_pred cCCCCCCCCCCccccccceeEEEEEEeccCccCCCCceEEEEEEEEeeEEEEeeecccCCeEEEEEEEeccchhhhhccC
Q 003349 31 VGASDGKNQQEVIHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGTYYTARISSLEMTKIEMEQVE 110 (828)
Q Consensus 31 ~~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~~~~dG~~~~~I~~~G~~RfrI~~~~~~~~y~~a~Ve~l~~~~~~~~~~~ 110 (828)
.+++.+.++|+.+++|+|||+|+|+++.++ ||| ++.|+++|.+||||.++...+||+.|+|++++++ ..
T Consensus 61 ~q~~~~~~~p~~~~l~~vGt~a~I~~~~~l---pdG--~~~v~v~G~~R~rI~~~~~~~~~~~a~ve~l~d~------~~ 129 (252)
T 3ljc_A 61 AQKEASTDEPGVNDLFTVGTVASILQMLKL---PDG--TVKVLVEGLQRARISALSDNGEHFSAKAEYLESP------TI 129 (252)
T ss_dssp EBCSSCCSSCCSSSBCSEEEEEEECCCBCC---TTS--CEEEEEEEEEEEECSEEEEETTEEEEECCCCCCC------CS
T ss_pred EecCCCcCCCCccchhheeEEEEEEEEEEC---CCC--eEEEEEEEEEEEEEEEEEcCCCcEEEEEEeecCC------CC
Confidence 344445556677899999999999999999 999 9999999999999999988899999999999853 12
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhccCchhhHHHhhccCChHHHHHHHHHcCCCCHHHHHHHhhccCHHHHHHHHHHHH
Q 003349 111 QDPDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELV 190 (828)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~~la~~lpl~~~~kq~LLe~~d~~~Rl~~l~~~l 190 (828)
...+..++...++..+.+|..... ..+.+....+.+++||+||+|+||+.+|++.++||+||++.|+.+|++.++.+|
T Consensus 130 ~~~e~~al~~~l~~~~~~~~~l~~--~~~~e~~~~~~~~~dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~l~~lL 207 (252)
T 3ljc_A 130 DEREQEVLVRTAISQFEGYIKLNK--KIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMM 207 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC--SSCHHHHHHTTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHccCCHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 234677888999999999987653 223334445667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhCCC
Q 003349 191 DRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDN 234 (828)
Q Consensus 191 ~~~~~~l~~~~~i~~~i~~~~~~~~r~~~l~~ql~~l~~~~~~~ 234 (828)
.++++.++++++|+++++.++++.||+|||+||+++|++|+|+.
T Consensus 208 ~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELGe~ 251 (252)
T 3ljc_A 208 ESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEM 251 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999864
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.8e-27 Score=265.13 Aligned_cols=229 Identities=24% Similarity=0.311 Sum_probs=175.6
Q ss_pred HhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhhC-------CCCCCCeEEEEcCCCCchhHHHHHH
Q 003349 288 IADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSI 360 (828)
Q Consensus 288 ~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~-------~~~~~~~lLL~GppGtGKT~la~~l 360 (828)
+.-+|+............+.+.+..++|.|++++|+.|.+.+..+..+ +..++.++|||||||||||++|+++
T Consensus 147 ~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAi 226 (428)
T 4b4t_K 147 VDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226 (428)
T ss_dssp EEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHH
T ss_pred HhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHH
Confidence 344565544333233334455667789999999999999998775543 2356678999999999999999999
Q ss_pred HHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC-----C-----hHH
Q 003349 361 ASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-----D-----PAS 429 (828)
Q Consensus 361 a~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~-----~-----~~~ 429 (828)
|+.++.+++.++++...+ .|+|..+..+...|..+... ++|+||||+|.+.+.+.+ + ..+
T Consensus 227 A~~~~~~~~~v~~~~l~~---------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~ 297 (428)
T 4b4t_K 227 ANSTKAAFIRVNGSEFVH---------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILI 297 (428)
T ss_dssp HHHHTCEEEEEEGGGTCC---------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHH
T ss_pred HHHhCCCeEEEecchhhc---------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHH
Confidence 999999999999887655 78999999999999887644 459999999999876511 1 145
Q ss_pred HHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcC-CCCHHHHHHHHHHhhcHHHHHh
Q 003349 430 ALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELP-GYTPEEKLRIAMRHLIPRVLDQ 505 (828)
Q Consensus 430 ~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~-~~~~ee~~~Il~~~l~~~~~~~ 505 (828)
.||..||+.. ...+++||+|||+++.+||||++ ||+ .|+|| .|+.++|..|++.++. .
T Consensus 298 ~lL~~ldg~~-------------~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~-----~ 359 (428)
T 4b4t_K 298 ELLTQMDGFD-------------QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS-----K 359 (428)
T ss_dssp HHHHHHHHSC-------------SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH-----S
T ss_pred HHHHHhhCCC-------------CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc-----C
Confidence 6777676421 13578999999999999999998 998 69997 6899999999998863 1
Q ss_pred cCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 506 HGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 506 ~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
..+. ++..++.++..+.+.+| +.|..+|++|++.++++
T Consensus 360 ~~l~------~~~dl~~lA~~t~G~sg-----adi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 360 MSLA------PEADLDSLIIRNDSLSG-----AVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp SCBC------TTCCHHHHHHHTTTCCH-----HHHHHHHHHHHHHHHHT
T ss_pred CCCC------cccCHHHHHHHCCCCCH-----HHHHHHHHHHHHHHHHC
Confidence 1111 11226777887777777 89999999999999987
No 9
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.94 E-value=1.4e-25 Score=272.32 Aligned_cols=311 Identities=23% Similarity=0.353 Sum_probs=243.1
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHHHhc----CCCCCCcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHH
Q 003349 245 ERKMQSAGMPSNIWKHVQKELRRLKKM----QPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVR 320 (828)
Q Consensus 245 ~~~l~~~~lp~~a~~~~~~e~~~l~~~----~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~ 320 (828)
..++....+|+++++.+++.+...+.. ........++..+++.++++|+......+...+..+.+.+...++|++.
T Consensus 386 ~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~ 465 (758)
T 1r6b_X 386 VKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDK 465 (758)
T ss_dssp HHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHH
T ss_pred hhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHH
Confidence 445566678999999998877655431 1223445578889999999999888776667788889999999999999
Q ss_pred HHHHHHHHHHHhhhC---CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCc---hhhhccCcccccccCc
Q 003349 321 VKQRIIEYLAVRKLK---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKD---EADIRGHRRTYIGSMP 394 (828)
Q Consensus 321 ~~~~l~~~l~~~~~~---~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~---~~~l~g~~~~~vg~~~ 394 (828)
+++.+...+...... +..+..++||+||||||||++|+++|+.++.+++.++|+.+.. .+.+.|.+.+|+|+..
T Consensus 466 ~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~ 545 (758)
T 1r6b_X 466 AIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQ 545 (758)
T ss_dssp HHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccc
Confidence 999998887654321 1223337999999999999999999999999999999988644 5677788888888764
Q ss_pred c-hHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC------
Q 003349 395 G-RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ------ 467 (828)
Q Consensus 395 g-~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~------ 467 (828)
+ .+...++.++ ++|+|||||++++++. ++.|+++|+.+ .+.+.. +.++++++++||+|||.+.
T Consensus 546 ~~~l~~~~~~~~--~~vl~lDEi~~~~~~~----~~~Ll~~le~~---~~~~~~-g~~~~~~~~~iI~tsN~~~~~~~~~ 615 (758)
T 1r6b_X 546 GGLLTDAVIKHP--HAVLLLDEIEKAHPDV----FNILLQVMDNG---TLTDNN-GRKADFRNVVLVMTTNAGVRETERK 615 (758)
T ss_dssp TTHHHHHHHHCS--SEEEEEETGGGSCHHH----HHHHHHHHHHS---EEEETT-TEEEECTTEEEEEEECSSCC-----
T ss_pred cchHHHHHHhCC--CcEEEEeCccccCHHH----HHHHHHHhcCc---EEEcCC-CCEEecCCeEEEEecCcchhhhhhc
Confidence 3 4677777765 5699999999998876 99999999864 334433 7889999999999999864
Q ss_pred -------------------CCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHH--HHHhcCCCCcccccCHHHHHHHHH
Q 003349 468 -------------------PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPR--VLDQHGLGSEFLQIPEAMVKLVIQ 525 (828)
Q Consensus 468 -------------------~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~--~~~~~~~~~~~~~i~~~~l~~l~~ 525 (828)
.++|+|++||+ +|.|++|+.+++..|++.++... .+... ...+.+++++++++++
T Consensus 616 ~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~---~~~~~~~~~a~~~l~~ 692 (758)
T 1r6b_X 616 SIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQK---GVSLEVSQEARNWLAE 692 (758)
T ss_dssp ------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHT---TEEEEECHHHHHHHHH
T ss_pred ccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHC---CcEEEeCHHHHHHHHH
Confidence 68999999995 89999999999999999887532 22222 2247899999999997
Q ss_pred -HhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccccccccCCCeeEEeec
Q 003349 526 -RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLLDNRLADGAEVEMEVI 589 (828)
Q Consensus 526 -~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 589 (828)
.|.+..|+|.+++.|++.+.. ++++.+++|.+..++.|.++++
T Consensus 693 ~~~~~~~g~R~l~~~i~~~~~~---------------------~l~~~~l~~~~~~~~~~~~~~~ 736 (758)
T 1r6b_X 693 KGYDRAMGARPMARVIQDNLKK---------------------PLANELLFGSLVDGGQVTVALD 736 (758)
T ss_dssp HHCBTTTBTTTHHHHHHHHHTH---------------------HHHHHHHHSTTTTCEEEEEEEE
T ss_pred hCCCcCCCchHHHHHHHHHHHH---------------------HHHHHHHcCcCCCCCEEEEEEe
Confidence 677788999999999988843 3334456677777777777664
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-26 Score=254.15 Aligned_cols=209 Identities=23% Similarity=0.318 Sum_probs=168.2
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCch
Q 003349 307 AKERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDE 379 (828)
Q Consensus 307 ~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~ 379 (828)
.+.+-.++|.|++++++.+.+.+.++..++ ..++.++|||||||||||++|+++|+.++.+++.++++...+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s- 220 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ- 220 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC-
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc-
Confidence 345567889999999999999998765433 345678999999999999999999999999999999887665
Q ss_pred hhhccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC-----C-----hHHHHHHhcCcccccccccccC
Q 003349 380 ADIRGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYL 448 (828)
Q Consensus 380 ~~l~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~-----~-----~~~~Ll~~ld~~~~~~~~~~~~ 448 (828)
.|+|..+..+.+.|..+... ++||||||+|.+.+.+.. + ..+.||..||...
T Consensus 221 --------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--------- 283 (405)
T 4b4t_J 221 --------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE--------- 283 (405)
T ss_dssp --------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT---------
T ss_pred --------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC---------
Confidence 79999999999999887644 459999999999876521 1 1455666665321
Q ss_pred CeeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCH-HHHHHHH
Q 003349 449 NVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPE-AMVKLVI 524 (828)
Q Consensus 449 ~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~-~~l~~l~ 524 (828)
...+++||+|||+++.+||||++ ||+ .|+|+.|+.++|.+|++.++.+ . .+++ ..+..++
T Consensus 284 ----~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----~-------~l~~dvdl~~lA 347 (405)
T 4b4t_J 284 ----TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK-----M-------NLTRGINLRKVA 347 (405)
T ss_dssp ----CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-----S-------BCCSSCCHHHHH
T ss_pred ----CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC-----C-------CCCccCCHHHHH
Confidence 13478999999999999999998 998 7999999999999999988631 1 1211 1267778
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 525 QRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 525 ~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+.+.+.+| +.|..+|++|++.++++
T Consensus 348 ~~t~G~SG-----ADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 348 EKMNGCSG-----ADVKGVCTEAGMYALRE 372 (405)
T ss_dssp HHCCSCCH-----HHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCH-----HHHHHHHHHHHHHHHHc
Confidence 87777788 89999999999999887
No 11
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.4e-26 Score=249.06 Aligned_cols=208 Identities=23% Similarity=0.304 Sum_probs=165.9
Q ss_pred HHhhcccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh
Q 003349 308 KERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 380 (828)
Q Consensus 308 ~~~l~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~ 380 (828)
..+-.++|.|++++++.|.+.+..+..++ ..++.++|||||||||||++|+++|+.++.+++.++.+.+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s-- 254 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ-- 254 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC--
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh--
Confidence 34556789999999999999998765443 245679999999999999999999999999999999887665
Q ss_pred hhccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC-----C-----hHHHHHHhcCcccccccccccCC
Q 003349 381 DIRGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLN 449 (828)
Q Consensus 381 ~l~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~-----~-----~~~~Ll~~ld~~~~~~~~~~~~~ 449 (828)
.|+|..+..+...|..+... ++||||||+|.+.+.+.. + ..+.||..||...
T Consensus 255 -------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~---------- 317 (437)
T 4b4t_I 255 -------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD---------- 317 (437)
T ss_dssp -------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC----------
T ss_pred -------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC----------
Confidence 78999998899988877644 459999999999876621 1 1344555555311
Q ss_pred eeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHH-HHHHHHH
Q 003349 450 VPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQ 525 (828)
Q Consensus 450 ~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~-~l~~l~~ 525 (828)
...+++||+|||+++.|||||++ ||+ .|+|+.|+.++|.+|++.++.+ . .++++ .++.++.
T Consensus 318 ---~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~-----~-------~l~~dvdl~~LA~ 382 (437)
T 4b4t_I 318 ---DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK-----M-------NLSEDVNLETLVT 382 (437)
T ss_dssp ---CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT-----S-------CBCSCCCHHHHHH
T ss_pred ---CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC-----C-------CCCCcCCHHHHHH
Confidence 13578999999999999999998 998 6999999999999999988632 1 12221 2567777
Q ss_pred HhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 526 RYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 526 ~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.+.+.+| +.|.++|++|++.++++
T Consensus 383 ~T~GfSG-----ADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 383 TKDDLSG-----ADIQAMCTEAGLLALRE 406 (437)
T ss_dssp HCCSCCH-----HHHHHHHHHHHHHHHHT
T ss_pred hCCCCCH-----HHHHHHHHHHHHHHHHc
Confidence 7777777 89999999999999887
No 12
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-25 Score=250.03 Aligned_cols=209 Identities=22% Similarity=0.282 Sum_probs=166.0
Q ss_pred HHhhcccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh
Q 003349 308 KERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 380 (828)
Q Consensus 308 ~~~l~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~ 380 (828)
+.+-.+++.|++++++.|.+.+..+..++ ..++.++|||||||||||++|+++|+.++.+++.++++.+.+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~-- 253 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ-- 253 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS--
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh--
Confidence 34456789999999999999887765543 245679999999999999999999999999999999887665
Q ss_pred hhccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC-----C-----hHHHHHHhcCcccccccccccCC
Q 003349 381 DIRGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLN 449 (828)
Q Consensus 381 ~l~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~-----~-----~~~~Ll~~ld~~~~~~~~~~~~~ 449 (828)
.|+|.....+...|..+... ++||||||+|.+.+.+.+ + ..+.||..||...
T Consensus 254 -------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~---------- 316 (434)
T 4b4t_M 254 -------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS---------- 316 (434)
T ss_dssp -------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC----------
T ss_pred -------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC----------
Confidence 78999888888888776543 459999999999876622 1 1345666666321
Q ss_pred eeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHH
Q 003349 450 VPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 526 (828)
Q Consensus 450 ~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~ 526 (828)
...+++||+|||+++.|||||++ ||+ .|+|+.|+.++|.+|++.++.+ ..+. -.++ ++.++..
T Consensus 317 ---~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----~~~~---~dvd---l~~lA~~ 382 (434)
T 4b4t_M 317 ---SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK-----MTTD---DDIN---WQELARS 382 (434)
T ss_dssp ---SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH-----SCBC---SCCC---HHHHHHH
T ss_pred ---CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC-----CCCC---CcCC---HHHHHHh
Confidence 13468999999999999999998 998 7999999999999999988642 1111 1122 5667777
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 527 YTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 527 ~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+.+.+| +.|..+|++|++.++++
T Consensus 383 t~G~sG-----ADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 383 TDEFNG-----AQLKAVTVEAGMIALRN 405 (434)
T ss_dssp CSSCCH-----HHHHHHHHHHHHHHHHH
T ss_pred CCCCCH-----HHHHHHHHHHHHHHHHc
Confidence 777777 88999999999999987
No 13
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.6e-26 Score=251.94 Aligned_cols=210 Identities=20% Similarity=0.253 Sum_probs=165.4
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHhhhC-------CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCch
Q 003349 307 AKERLDSDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDE 379 (828)
Q Consensus 307 ~~~~l~~~i~G~~~~~~~l~~~l~~~~~~-------~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~ 379 (828)
.+.+-.++|.|++++++.|.+.+..+..+ +-.++.++|||||||||||++|+++|+.++.+|+.++++.+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s- 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ- 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC-
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc-
Confidence 34456788999999999999988765433 2356779999999999999999999999999999999887665
Q ss_pred hhhccCcccccccCcchHHHHHHhcCCCC-cEEEEecccccCCCCCCC----------hHHHHHHhcCcccccccccccC
Q 003349 380 ADIRGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRGD----------PASALLEVLDPEQNKTFNDHYL 448 (828)
Q Consensus 380 ~~l~g~~~~~vg~~~g~l~~~~~~~~~~~-~vl~iDEid~l~~~~~~~----------~~~~Ll~~ld~~~~~~~~~~~~ 448 (828)
.|+|..+..+...|..+.... +||||||+|.+...+..+ ..+.||..||.. .
T Consensus 282 --------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~-----~---- 344 (467)
T 4b4t_H 282 --------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF-----D---- 344 (467)
T ss_dssp --------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS-----C----
T ss_pred --------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc-----C----
Confidence 789999989999998876544 499999999998765221 134455555421 1
Q ss_pred CeeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHH
Q 003349 449 NVPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ 525 (828)
Q Consensus 449 ~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~ 525 (828)
...+++||+|||+++.||+||++ ||+ .|+|+.|+.++|.+|++.++.+ ..+. ..++ ++.|++
T Consensus 345 ----~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~-----~~l~---~dvd---l~~LA~ 409 (467)
T 4b4t_H 345 ----PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS-----MSVE---RGIR---WELISR 409 (467)
T ss_dssp ----CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-----SCBC---SSCC---HHHHHH
T ss_pred ----CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-----CCCC---CCCC---HHHHHH
Confidence 23578999999999999999998 998 7999999999999999988632 1111 1222 466777
Q ss_pred HhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 526 RYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 526 ~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.+.+.+| +.|..+|++|++.++++
T Consensus 410 ~T~GfSG-----ADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 410 LCPNSTG-----AELRSVCTEAGMFAIRA 433 (467)
T ss_dssp HCCSCCH-----HHHHHHHHHHHHHHHHH
T ss_pred HCCCCCH-----HHHHHHHHHHHHHHHHc
Confidence 7777777 88999999999999987
No 14
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.8e-25 Score=246.65 Aligned_cols=209 Identities=22% Similarity=0.296 Sum_probs=165.7
Q ss_pred HHhhcccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh
Q 003349 308 KERLDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 380 (828)
Q Consensus 308 ~~~l~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~ 380 (828)
+.+-.++|.|++++++.|.+.+..+..++ ..++.++|||||||||||++|+++|+.++.+++.++++.+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s-- 253 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD-- 253 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC--
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc--
Confidence 34556789999999999999998765433 356679999999999999999999999999999999887665
Q ss_pred hhccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC-----C-----hHHHHHHhcCcccccccccccCC
Q 003349 381 DIRGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLN 449 (828)
Q Consensus 381 ~l~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~-----~-----~~~~Ll~~ld~~~~~~~~~~~~~ 449 (828)
+|+|.....+...|..+... ++||||||+|.+.+.+.. + ..+.||..||+..
T Consensus 254 -------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---------- 316 (437)
T 4b4t_L 254 -------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD---------- 316 (437)
T ss_dssp -------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS----------
T ss_pred -------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc----------
Confidence 78999888888888877644 459999999999876521 1 1355666666321
Q ss_pred eeecCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHH
Q 003349 450 VPFDLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 526 (828)
Q Consensus 450 ~~~~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~ 526 (828)
...+++||+|||+++.|||||++ ||+ .|+|+.|+.++|.+|++.++.+ .... -.+ .+..++..
T Consensus 317 ---~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----~~~~---~d~---dl~~lA~~ 382 (437)
T 4b4t_L 317 ---NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK-----VKKT---GEF---DFEAAVKM 382 (437)
T ss_dssp ---CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT-----SCBC---SCC---CHHHHHHT
T ss_pred ---CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC-----CCCC---ccc---CHHHHHHh
Confidence 13468999999999999999998 698 7999999999999999988631 1111 112 25667777
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 527 YTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 527 ~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+.+.+| +.|..+|++|++.++++
T Consensus 383 t~G~sG-----ADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 383 SDGFNG-----ADIRNCATEAGFFAIRD 405 (437)
T ss_dssp CCSCCH-----HHHHHHHHHHHHHHHHT
T ss_pred CCCCCH-----HHHHHHHHHHHHHHHHc
Confidence 777777 89999999999999877
No 15
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.91 E-value=6.5e-24 Score=257.42 Aligned_cols=274 Identities=21% Similarity=0.288 Sum_probs=200.6
Q ss_pred CCCcchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCC---CCCCCeEEEEcCCCC
Q 003349 275 QPGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKP---DARGPVLCFVGPPGV 351 (828)
Q Consensus 275 ~~~~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~---~~~~~~lLL~GppGt 351 (828)
.....++..+++.++++|+......+...+..+...+...++|++.+++.+...+....... ..+..++||+|||||
T Consensus 453 ~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~Gt 532 (758)
T 3pxi_A 453 EVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGV 532 (758)
T ss_dssp -CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTS
T ss_pred ccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCC
Confidence 34566788899999999999888876667778888999999999999999999887654321 112226999999999
Q ss_pred chhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChH
Q 003349 352 GKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPA 428 (828)
Q Consensus 352 GKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~ 428 (828)
|||++|+++|+.+ +.+++.++|+.+.+.. ... .+.+...++..+ .+|+|||||++++++. +
T Consensus 533 GKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~---------~~~-~~~l~~~~~~~~--~~vl~lDEi~~~~~~~----~ 596 (758)
T 3pxi_A 533 GKTELARALAESIFGDEESMIRIDMSEYMEKH---------STS-GGQLTEKVRRKP--YSVVLLDAIEKAHPDV----F 596 (758)
T ss_dssp SHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSC---------CCC----CHHHHHHCS--SSEEEEECGGGSCHHH----H
T ss_pred CHHHHHHHHHHHhcCCCcceEEEechhccccc---------ccc-cchhhHHHHhCC--CeEEEEeCccccCHHH----H
Confidence 9999999999998 5789999998876532 111 345667777655 4599999999998876 9
Q ss_pred HHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCC------------CCccccCceE-EEEcCCCCHHHHHHHHH
Q 003349 429 SALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQP------------IPPPLLDRME-VIELPGYTPEEKLRIAM 495 (828)
Q Consensus 429 ~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~------------l~~aLl~R~~-~i~~~~~~~ee~~~Il~ 495 (828)
+.|+++|+.+. +.+. .+..+++.+++||+|||.+.. ++|+|++||+ +|.|++|+.+++..|++
T Consensus 597 ~~Ll~~le~g~---~~~~-~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~ 672 (758)
T 3pxi_A 597 NILLQVLEDGR---LTDS-KGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVS 672 (758)
T ss_dssp HHHHHHHHHSB---CC------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHH
T ss_pred HHHHHHhccCe---EEcC-CCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHH
Confidence 99999998643 3332 366778899999999997654 8999999995 89999999999999999
Q ss_pred HhhcHHHHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccccccCCccc
Q 003349 496 RHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQALPSSKDVHRLGSPLL 574 (828)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 574 (828)
.++...... .+-....+.++++++++|++ .|++..|+|.|++.|++.+.. ++++.++
T Consensus 673 ~~l~~~~~~-~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~---------------------~l~~~~l 730 (758)
T 3pxi_A 673 LMSDQLTKR-LKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVED---------------------RLSEELL 730 (758)
T ss_dssp HHHHHHHHH-HHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHH---------------------HHHHHHH
T ss_pred HHHHHHHHH-HHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH---------------------HHHHHHH
Confidence 887532211 11113457899999999997 599999999999999987733 3444567
Q ss_pred cccccCCCeeEEeecc
Q 003349 575 DNRLADGAEVEMEVIP 590 (828)
Q Consensus 575 ~~~~~~~~~~~~~~~~ 590 (828)
+|.+..++.|.++++.
T Consensus 731 ~~~~~~~~~~~~~~~~ 746 (758)
T 3pxi_A 731 RGNIHKGQHIVLDVED 746 (758)
T ss_dssp TTCSCSSSEEEEEESS
T ss_pred cCCCCCCCEEEEEEEC
Confidence 7788888888887753
No 16
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.91 E-value=8.6e-24 Score=235.89 Aligned_cols=235 Identities=20% Similarity=0.286 Sum_probs=179.2
Q ss_pred cHHHHHHhhcccccchHHHHHHHHHHHHHhhh--------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecC
Q 003349 303 DLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL--------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 374 (828)
Q Consensus 303 ~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~--------~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~ 374 (828)
...++...|++.++||+++|+.+...+..+.. ....++.++||+||||||||++|+++|+.++.+++.++++
T Consensus 5 tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~ 84 (444)
T 1g41_A 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (444)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecch
Confidence 34667788999999999999999888755321 1112456899999999999999999999999999999876
Q ss_pred CcCchhhhccCcccccccC-cch---------------------------------------------------------
Q 003349 375 GVKDEADIRGHRRTYIGSM-PGR--------------------------------------------------------- 396 (828)
Q Consensus 375 ~~~~~~~l~g~~~~~vg~~-~g~--------------------------------------------------------- 396 (828)
...+. +|+|.. +..
T Consensus 85 ~~~~~--------g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~ 156 (444)
T 1g41_A 85 KFTEV--------GYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTR 156 (444)
T ss_dssp GGC------------CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------
T ss_pred hhccc--------ceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCH
Confidence 54331 111110 000
Q ss_pred --------------------------------------------------------------------------------
Q 003349 397 -------------------------------------------------------------------------------- 396 (828)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (828)
T Consensus 157 ~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~ 236 (444)
T 1g41_A 157 QAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLIN 236 (444)
T ss_dssp ---------------------------------------------------------------------CCGGGSCSSCC
T ss_pred HHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccC
Confidence
Q ss_pred ----HHHHHHhcCCCCcEEEEecccccCCCC---CCCh-----HHHHHHhcCcccccccccccCCeeecCCCcEEEEec-
Q 003349 397 ----LIDGLKRVGVCNPVMLLDEIDKTGSDV---RGDP-----ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA- 463 (828)
Q Consensus 397 ----l~~~~~~~~~~~~vl~iDEid~l~~~~---~~~~-----~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt- 463 (828)
..+++..+ ..++++++||||+++.+. .+|+ |++||++||+.++.. +| .+++.++++||+|+
T Consensus 237 ~~~~~~~ai~~a-e~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~---~~--~~~d~~~ilfI~~ga 310 (444)
T 1g41_A 237 PEELKQKAIDAV-EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST---KH--GMVKTDHILFIASGA 310 (444)
T ss_dssp HHHHHHHHHHHH-HHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE---TT--EEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHHh-ccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc---cc--ceecCCcEEEEeccc
Confidence 00111111 125699999999998762 3443 569999999876554 44 68899999999997
Q ss_pred ----CCCCCCCccccCceEE-EEcCCCCHHHHHHHH---HHhhcHHHHHhcCCCCcccccCHHHHHHHHHH------hhh
Q 003349 464 ----NRAQPIPPPLLDRMEV-IELPGYTPEEKLRIA---MRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR------YTR 529 (828)
Q Consensus 464 ----N~~~~l~~aLl~R~~~-i~~~~~~~ee~~~Il---~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~------~~~ 529 (828)
|+.+ +.|+|++||.+ |.|++|+.+++.+|+ +.++.+++...++.....+.++++++.+|++. |+.
T Consensus 311 f~~~~~~d-lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~ 389 (444)
T 1g41_A 311 FQVARPSD-LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 389 (444)
T ss_dssp CSSCCGGG-SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred cccCChhh-cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCc
Confidence 5444 66899999985 999999999999999 67788888787777788899999999999984 557
Q ss_pred hhchHHHHHHHHHHHHHHHHHHH
Q 003349 530 EAGVRNLERNLAALARAAAVKVA 552 (828)
Q Consensus 530 ~~g~R~l~~~i~~l~~~a~~~~l 552 (828)
+.|+|.|++.|+++|+.+++++.
T Consensus 390 ~~GaR~L~~~ie~~~~~~~~~~~ 412 (444)
T 1g41_A 390 NIGARRLHTVMERLMDKISFSAS 412 (444)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHGG
T ss_pred cCCchHHHHHHHHHHHHHHhhcc
Confidence 89999999999999998887643
No 17
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.91 E-value=6.9e-24 Score=259.99 Aligned_cols=280 Identities=23% Similarity=0.338 Sum_probs=205.0
Q ss_pred cchHHHHHHHHhcCCCCccchhHHhcHHHHHHhhcccccchHHHHHHHHHHHHHhhhC---CCCCCCeEEEEcCCCCchh
Q 003349 278 YTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLK---PDARGPVLCFVGPPGVGKT 354 (828)
Q Consensus 278 ~~~~~~~l~~~~~iP~~~~~~~~~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~---~~~~~~~lLL~GppGtGKT 354 (828)
...+...++.++++|+......+...+..+...+...++|++.+++.+...+...... +..+..++||+||||||||
T Consensus 523 ~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT 602 (854)
T 1qvr_A 523 EEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKT 602 (854)
T ss_dssp HHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHH
T ss_pred HHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHH
Confidence 3467778888999988776555455555666778888999999999999888765431 2223347999999999999
Q ss_pred HHHHHHHHHh---CCCeEEEecCCcCc---hhhhccCcccccccCc-chHHHHHHhcCCCCcEEEEecccccCCCCCCCh
Q 003349 355 SLASSIASAL---GRKFIRISLGGVKD---EADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDP 427 (828)
Q Consensus 355 ~la~~la~~l---~~~~~~i~~~~~~~---~~~l~g~~~~~vg~~~-g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~ 427 (828)
++|+++++.+ +.+++.++|+.+.. .+.+.|.+.+|+|+.. +.+...++..+ .+|+|||||++++++.
T Consensus 603 ~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~--~~vl~lDEi~~l~~~~---- 676 (854)
T 1qvr_A 603 ELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP--YSVILFDEIEKAHPDV---- 676 (854)
T ss_dssp HHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCS--SEEEEESSGGGSCHHH----
T ss_pred HHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCC--CeEEEEecccccCHHH----
Confidence 9999999998 67899999987654 4566777778888876 77888887755 4699999999998876
Q ss_pred HHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC--------------------------CCCCccccCceE-EE
Q 003349 428 ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA--------------------------QPIPPPLLDRME-VI 480 (828)
Q Consensus 428 ~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~--------------------------~~l~~aLl~R~~-~i 480 (828)
++.|+++|+.+. +.+. .++++++++++||+|||.+ ..+.|+|++||+ ++
T Consensus 677 ~~~Ll~~l~~~~---~~~~-~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i 752 (854)
T 1qvr_A 677 FNILLQILDDGR---LTDS-HGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIV 752 (854)
T ss_dssp HHHHHHHHTTTE---ECCS-SSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCC
T ss_pred HHHHHHHhccCc---eECC-CCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEE
Confidence 999999999653 3333 3778899999999999972 368999999996 78
Q ss_pred EcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003349 481 ELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQEQEQA 559 (828)
Q Consensus 481 ~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~l~~~a~~~~l~~~~~~~ 559 (828)
.|.+|+.+++..|+..++...... .+.....+.++++++++|++ .|.+..|+|.|++.|++.+..+.
T Consensus 753 ~~~pl~~edi~~i~~~~l~~~~~~-~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~----------- 820 (854)
T 1qvr_A 753 VFRPLTKEQIRQIVEIQLSYLRAR-LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL----------- 820 (854)
T ss_dssp BCCCCCHHHHHHHHHHHHHHHHHH-HHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH-----------
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHH-HHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH-----------
Confidence 899999999999999887532211 11112347899999999997 45557899999999988774332
Q ss_pred CCCCccccccCCccccccccCCCeeEEeec
Q 003349 560 LPSSKDVHRLGSPLLDNRLADGAEVEMEVI 589 (828)
Q Consensus 560 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 589 (828)
++.++.|.+.+++.|.|+++
T Consensus 821 ----------~~~i~~~~~~~~~~~~~~~~ 840 (854)
T 1qvr_A 821 ----------AQKILAGEVKEGDRVQVDVG 840 (854)
T ss_dssp ----------HHHHHHTSSCSSCEEEEECC
T ss_pred ----------HHHHHhCcCCCCCEEEEEEE
Confidence 33455677778888887764
No 18
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.89 E-value=5.4e-22 Score=214.83 Aligned_cols=243 Identities=23% Similarity=0.333 Sum_probs=186.6
Q ss_pred HhcHHHHHHhhcccccchHHHHHHHHHHHHHhhh---CCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecC
Q 003349 301 DLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---KPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLG 374 (828)
Q Consensus 301 ~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~---~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~ 374 (828)
...+..+.+.+.+.++|++.+++.+...+..... .+..+..+++|+||||||||++|+++++.+ +.+++.++++
T Consensus 5 ~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 5 REKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp HHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 3456678888999999999999999988876542 222233479999999999999999999998 4468889887
Q ss_pred CcCc---hhhhccCcccccccCc-chHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCe
Q 003349 375 GVKD---EADIRGHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 450 (828)
Q Consensus 375 ~~~~---~~~l~g~~~~~vg~~~-g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~ 450 (828)
.... ...+.|....+.|... +.+...+..++ ..++||||+|++.+.. ++.|+++|+.... .+ ..+.
T Consensus 85 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~~vl~lDEi~~l~~~~----~~~Ll~~le~~~~---~~-~~~~ 154 (311)
T 4fcw_A 85 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP--YSVILFDAIEKAHPDV----FNILLQMLDDGRL---TD-SHGR 154 (311)
T ss_dssp GCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCS--SEEEEEETGGGSCHHH----HHHHHHHHHHSEE---EC-TTSC
T ss_pred cccccccHHHhcCCCCccccccccchHHHHHHhCC--CeEEEEeChhhcCHHH----HHHHHHHHhcCEE---Ec-CCCC
Confidence 7644 4456677777777764 56777777655 4699999999998766 8999999986532 22 2356
Q ss_pred eecCCCcEEEEecCC--------------------------CCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHH
Q 003349 451 PFDLSKVIFVATANR--------------------------AQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVL 503 (828)
Q Consensus 451 ~~~~~~viiI~TtN~--------------------------~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~ 503 (828)
++++++++||+|||. ...++++|++||+ ++.|++|+.+++..|++.++.....
T Consensus 155 ~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 155 TVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp EEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred EEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 788899999999999 3478999999995 7999999999999999988754222
Q ss_pred HhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 504 DQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 504 ~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
. .+.....+.+++++++++++ .|....|+|.|++.++..+..+..+.+..
T Consensus 235 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 235 R-LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 285 (311)
T ss_dssp H-HHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHH
T ss_pred H-HHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 2 11122357899999999998 34447899999999999887666555444
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.88 E-value=4.7e-22 Score=216.33 Aligned_cols=208 Identities=19% Similarity=0.248 Sum_probs=163.4
Q ss_pred cccccchHHHHHHHHHHHHHhhhCC------CCCCCeEEEEcCCCCchhHHHHHHHHHh-CCCeEEEecCCcCchhhhcc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKP------DARGPVLCFVGPPGVGKTSLASSIASAL-GRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~------~~~~~~lLL~GppGtGKT~la~~la~~l-~~~~~~i~~~~~~~~~~l~g 384 (828)
.++++|++++++.+.+.+..+..++ ..++.++||+||||||||++|+++|+.+ +.+++.++++....
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~------ 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS------ 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC------
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh------
Confidence 4579999999999999887654332 2345689999999999999999999999 78888898876543
Q ss_pred CcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCCC-------hHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 385 HRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~~-------~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.|+|.....+...|..+... +.||||||+|.+.+.+... ..+.|+..|+... .+..+
T Consensus 85 ---~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~------------~~~~~ 149 (322)
T 1xwi_A 85 ---KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG------------VDNDG 149 (322)
T ss_dssp ---SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS------------SCCTT
T ss_pred ---hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc------------ccCCC
Confidence 57788777777777665433 4599999999998765321 1355666665321 12357
Q ss_pred cEEEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 457 VIFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
++||+|||.++.+++++++||+ .++++.|+.+++.+|++.++. .....+++..+..++....+.+|
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----------~~~~~l~~~~l~~la~~t~G~sg--- 216 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG----------TTQNSLTEADFRELGRKTDGYSG--- 216 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT----------TCCBCCCHHHHHHHHHTCTTCCH---
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh----------cCCCCCCHHHHHHHHHHcCCCCH---
Confidence 8999999999999999999996 799999999999999998853 22345788899999987777777
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 003349 536 LERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 536 l~~~i~~l~~~a~~~~l~~~ 555 (828)
+.|..+|++|++.++++.
T Consensus 217 --adl~~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 217 --ADISIIVRDALMQPVRKV 234 (322)
T ss_dssp --HHHHHHHHHHHTHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 889999999999988874
No 20
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=99.88 E-value=5.8e-22 Score=201.79 Aligned_cols=156 Identities=16% Similarity=0.253 Sum_probs=131.8
Q ss_pred CCCCCCCCCCccccccceeEEEEEEeccCccCCCCceEEEEEEEEeeEEEEeeecccCCeEEEEEEEeccchhhhhccCC
Q 003349 32 GASDGKNQQEVIHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGTYYTARISSLEMTKIEMEQVEQ 111 (828)
Q Consensus 32 ~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~~~~dG~~~~~I~~~G~~RfrI~~~~~~~~y~~a~Ve~l~~~~~~~~~~~~ 111 (828)
+++.+.++|+.+++|+|||+|+|.++.++ ||| ++.|+++|.+||||.++..++||++|+|++++++ ...
T Consensus 53 q~~~~~~~p~~~~l~~vGt~a~I~~~~~l---~dG--~~~v~v~G~~R~ri~~~~~~~~~~~a~v~~~~~~------~~~ 121 (209)
T 3m65_A 53 QQDISIDEPGEDEIFTVGTYTKIKQMLKL---PNG--TIRVLVEGLKRAHIVKYNEHEDYTSVDIQLIHED------DSK 121 (209)
T ss_dssp BSSTTCSSCCGGGBCSEEEEEEEEEEEEC---TTS--CEEEEEEEEEEEEEEEEEECSSSEEEEEEECCCC--------C
T ss_pred ecCCCcCCCCcchhhheeEEEEEEEEEEC---CCC--eEEEEEEEEEEEEEEEEEcCCCcEEEEEEEecCC------CCC
Confidence 33334445667889999999999999999 999 9999999999999999988999999999999863 123
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhccCchhhHHHhhccCChHHHHHHHHHcCCCCHHHHHHHhhccCHHHHHHHHHHHHH
Q 003349 112 DPDFIALSRQFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELVD 191 (828)
Q Consensus 112 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~~la~~lpl~~~~kq~LLe~~d~~~Rl~~l~~~l~ 191 (828)
..+..++.+.+++.+.+|...... .+.+....+.+++||+||+|+||+++|++.++||+|||+.|+.+|++.++.+|+
T Consensus 122 ~~e~~al~~~l~~~~~~~~~~~~~--~~~e~~~~~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~~d~~~Rl~~l~~~L~ 199 (209)
T 3m65_A 122 DTEDEALMRTLLDHFDQYIKISKK--ISAETYAAVTDIEEPGRMADIVASHLPLKLKDKQDILETADVKDRLNKVIDFIN 199 (209)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTCCCHHHHHHHHHHHSCCCHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456788999999999999876531 122233345678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 003349 192 RHLQSIRVA 200 (828)
Q Consensus 192 ~~~~~l~~~ 200 (828)
++++.++++
T Consensus 200 ~E~e~~~l~ 208 (209)
T 3m65_A 200 NEKEVLEIE 208 (209)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhc
Confidence 999998875
No 21
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.87 E-value=2.9e-22 Score=222.01 Aligned_cols=238 Identities=18% Similarity=0.255 Sum_probs=168.9
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhh---------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecC
Q 003349 304 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKL---------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 374 (828)
Q Consensus 304 l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~---------~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~ 374 (828)
...+.+.|++.++||+.+++.+...+..... ....++.++||+||||||||++|+++|+.++.+++.++++
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~ 85 (363)
T 3hws_A 6 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 85 (363)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechH
Confidence 4556777888899999999999888743221 1112456899999999999999999999999999999987
Q ss_pred CcCchhhhccCcccccccC-cchHHHHHHhcC-----CCCcEEEEecccccCCCCCCC----------hHHHHHHhcCcc
Q 003349 375 GVKDEADIRGHRRTYIGSM-PGRLIDGLKRVG-----VCNPVMLLDEIDKTGSDVRGD----------PASALLEVLDPE 438 (828)
Q Consensus 375 ~~~~~~~l~g~~~~~vg~~-~g~l~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~----------~~~~Ll~~ld~~ 438 (828)
.... ..|+|.. .+.+...+..+. ..++|+||||+|++.+.+.+. .++.|+++|++.
T Consensus 86 ~l~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 86 TLTE--------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp HHTT--------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred Hhcc--------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 6432 1356655 445555655432 124599999999999875332 589999999832
Q ss_pred c------ccccccccCCeeecCCCcEEEEecCCC----------CC----------------------------------
Q 003349 439 Q------NKTFNDHYLNVPFDLSKVIFVATANRA----------QP---------------------------------- 468 (828)
Q Consensus 439 ~------~~~~~~~~~~~~~~~~~viiI~TtN~~----------~~---------------------------------- 468 (828)
. .....+....+.+..+|++||+|+|.. ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~ 237 (363)
T 3hws_A 158 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 237 (363)
T ss_dssp ----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHH
T ss_pred eeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHc
Confidence 1 111122222234456778888887753 11
Q ss_pred -CCccccCceE-EEEcCCCCHHHHHHHHHHh---hcHHHHHhcCCCCcccccCHHHHHHHHH-HhhhhhchHHHHHHHHH
Q 003349 469 -IPPPLLDRME-VIELPGYTPEEKLRIAMRH---LIPRVLDQHGLGSEFLQIPEAMVKLVIQ-RYTREAGVRNLERNLAA 542 (828)
Q Consensus 469 -l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~---l~~~~~~~~~~~~~~~~i~~~~l~~l~~-~~~~~~g~R~l~~~i~~ 542 (828)
++|+|++||+ ++.|++|+.+++.+|+... +..++....+.....+.++++++++|++ .|.+..|+|.|++.|++
T Consensus 238 ~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~ 317 (363)
T 3hws_A 238 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEA 317 (363)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHH
T ss_pred CCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHH
Confidence 8999999998 5789999999999999862 3333322222223457899999999998 68899999999999999
Q ss_pred HHHHHHH
Q 003349 543 LARAAAV 549 (828)
Q Consensus 543 l~~~a~~ 549 (828)
.+..+..
T Consensus 318 ~~~~~l~ 324 (363)
T 3hws_A 318 ALLDTMY 324 (363)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8865543
No 22
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.86 E-value=7.8e-22 Score=234.72 Aligned_cols=207 Identities=22% Similarity=0.317 Sum_probs=165.2
Q ss_pred hhcccccchHHHHHHHHHHHHHhhhCCC-------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhh
Q 003349 310 RLDSDHYGLVRVKQRIIEYLAVRKLKPD-------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI 382 (828)
Q Consensus 310 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~-------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l 382 (828)
+-.+++.|++++++.|.+.+..+..++. .++.++|||||||||||++|+++|+.++.+++.++++.+.+
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s---- 276 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS---- 276 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS----
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc----
Confidence 4457899999999999999887654432 35668999999999999999999999999999998776543
Q ss_pred ccCcccccccCcchHHHHHHhcCCCC-cEEEEecccccCCCCCC---C----hHHHHHHhcCcccccccccccCCeeecC
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRG---D----PASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~~~~-~vl~iDEid~l~~~~~~---~----~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.|+|..+..+...|..+.... .||||||||.+.+.+.+ + ..+.|+..|+.... .
T Consensus 277 -----k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~-------------~ 338 (806)
T 3cf2_A 277 -----KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-------------R 338 (806)
T ss_dssp -----SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG-------------G
T ss_pred -----ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc-------------c
Confidence 688888889999999887554 49999999999986632 1 24667777764321 2
Q ss_pred CCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCccccc-CHHHHHHHHHHhhhh
Q 003349 455 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI-PEAMVKLVIQRYTRE 530 (828)
Q Consensus 455 ~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i-~~~~l~~l~~~~~~~ 530 (828)
.+++||+|||+++.+|++|++ ||+ .|+|+.|+.++|.+|++.++.+ ..+ ++..+..++..+.+.
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~------------~~~~~dvdl~~lA~~T~Gf 406 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN------------MKLADDVDLEQVANETHGH 406 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS------------SEECTTCCHHHHHHHCCSC
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC------------CCCCcccCHHHHHHhcCCC
Confidence 368999999999999999999 998 7999999999999999988631 111 222366778877777
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHh
Q 003349 531 AGVRNLERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 531 ~g~R~l~~~i~~l~~~a~~~~l~~~ 555 (828)
.| +.|..+|++|++.++++.
T Consensus 407 sg-----aDL~~Lv~eA~~~A~~r~ 426 (806)
T 3cf2_A 407 VG-----ADLAALCSEAALQAIRKK 426 (806)
T ss_dssp CH-----HHHHHHHHHHHHHHHHHH
T ss_pred CH-----HHHHHHHHHHHHHHHHhc
Confidence 77 789999999999888773
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.86 E-value=1.1e-21 Score=213.65 Aligned_cols=208 Identities=16% Similarity=0.198 Sum_probs=161.9
Q ss_pred cccccchHHHHHHHHHHHHHhhhCC------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccC
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKP------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~ 385 (828)
..+++|++.+++.+.+.+..+...+ ..++.++||+||||||||++|+++|+.++.+++.++++....
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~------- 89 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS------- 89 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT-------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh-------
Confidence 3568999999999999886654322 234568999999999999999999999999999998765432
Q ss_pred cccccccCcchHHHHHHhcCCCC-cEEEEecccccCCCCCC-------ChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 386 RRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~~~-~vl~iDEid~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
.|+|.....+...|..+.... .||||||||.+.+.+.. ..++.|+..|+.... ...++
T Consensus 90 --~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~------------~~~~v 155 (322)
T 3eie_A 90 --KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN------------DSQGV 155 (322)
T ss_dssp --TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT------------SCCCE
T ss_pred --cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc------------cCCce
Confidence 567777777777776655433 49999999999875521 125667777764211 13468
Q ss_pred EEEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 458 IFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
+||+|||.++.+++++++||+ .++++.|+.+++.+|++.++. .....+++..+..++....+..|
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~----------~~~~~~~~~~l~~la~~t~g~sg---- 221 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----------DTPCVLTKEDYRTLGAMTEGYSG---- 221 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT----------TCCCCCCHHHHHHHHHTTTTCCH----
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc----------cCCCCCCHHHHHHHHHHcCCCCH----
Confidence 999999999999999999996 799999999999999998753 22356788899999987766666
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003349 537 ERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 537 ~~~i~~l~~~a~~~~l~~~ 555 (828)
+.|..+|+.|++.++++.
T Consensus 222 -~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 222 -SDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp -HHHHHHHHHHTTHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 788899999999888874
No 24
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.86 E-value=1e-22 Score=242.18 Aligned_cols=206 Identities=21% Similarity=0.317 Sum_probs=145.6
Q ss_pred cccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhcc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g 384 (828)
..++.|++++++.+.+.+.++..++ ..++.++|||||||||||++|+++|..++.+++.++.+.+.+
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s------ 549 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT------ 549 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT------
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc------
Confidence 4578899999999999887765433 235568999999999999999999999999999887665444
Q ss_pred CcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC----------ChHHHHHHhcCcccccccccccCCeeec
Q 003349 385 HRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG----------DPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~----------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
+|+|.++..+.+.|..+... ++||||||||.+.+.+.. ...+.||..||... .
T Consensus 550 ---~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-------------~ 613 (806)
T 3cf2_A 550 ---MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-------------T 613 (806)
T ss_dssp ---TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-------------S
T ss_pred ---cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-------------C
Confidence 79999999999999988654 559999999999876521 12677888887431 1
Q ss_pred CCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhh
Q 003349 454 LSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 530 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~ 530 (828)
..+++||+|||+++.||+|+++ ||+ .|+|+.|+.++|.+|++.++.+.. +. ++..++.|++.+.+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~----------~~-~~~dl~~la~~t~g~ 682 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP----------VA-KDVDLEFLAKMTNGF 682 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC------------C-CC-------------
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCC----------CC-CCCCHHHHHHhCCCC
Confidence 3468999999999999999999 998 799999999999999998864211 11 122355667766667
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHh
Q 003349 531 AGVRNLERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 531 ~g~R~l~~~i~~l~~~a~~~~l~~~ 555 (828)
+| +.|..+|+.|++.++++.
T Consensus 683 SG-----adi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 683 SG-----ADLTEICQRACKLAIRES 702 (806)
T ss_dssp --------CHHHHHHHHHHHHHHHH
T ss_pred CH-----HHHHHHHHHHHHHHHHHH
Confidence 77 899999999999999874
No 25
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.85 E-value=3.3e-21 Score=212.55 Aligned_cols=208 Identities=15% Similarity=0.182 Sum_probs=155.9
Q ss_pred cccccchHHHHHHHHHHHHHhhhCC------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccC
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKP------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~ 385 (828)
..+++|++.+++.+.+.+..+...+ ..++.++||+||||||||++|+++|+.++.+++.++++....
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~------- 122 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS------- 122 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS-------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh-------
Confidence 3468999999999999886553322 234567999999999999999999999999999988765322
Q ss_pred cccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCCC-------hHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 386 RRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~~-------~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
.|+|.....+...|..+.. .+.||||||+|.+.+.+... .++.|+..|+... ....++
T Consensus 123 --~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~------------~~~~~v 188 (355)
T 2qp9_X 123 --KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG------------NDSQGV 188 (355)
T ss_dssp --CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---------------CCE
T ss_pred --hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc------------ccCCCe
Confidence 4667777667777766543 24599999999998764211 1466676665321 113468
Q ss_pred EEEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 458 IFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
+||+|||.++.+++++++||+ .++++.|+.+++.+|++.++. .....+++..+..|+....+..|
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----------~~~~~~~~~~l~~la~~t~G~sg---- 254 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----------DTPSVLTKEDYRTLGAMTEGYSG---- 254 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT----------TSCBCCCHHHHHHHHHHTTTCCH----
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHh----------hCCCCCCHHHHHHHHHHcCCCCH----
Confidence 999999999999999999996 799999999999999998753 22345788899999987766666
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003349 537 ERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 537 ~~~i~~l~~~a~~~~l~~~ 555 (828)
+.|..+|+.|++.++++.
T Consensus 255 -~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 255 -SDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 888899999999988873
No 26
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.85 E-value=9.2e-21 Score=215.09 Aligned_cols=207 Identities=19% Similarity=0.244 Sum_probs=156.8
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCC------CCCCeEEEEcCCCCchhHHHHHHHHHh-CCCeEEEecCCcCchhhhccC
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASAL-GRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~------~~~~~lLL~GppGtGKT~la~~la~~l-~~~~~~i~~~~~~~~~~l~g~ 385 (828)
++++|++.+++.+.+.+..+...+. .++.++||+||||||||++|+++|+.+ +.+++.++++....
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~------- 206 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS------- 206 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh-------
Confidence 4689999999999998866543322 345689999999999999999999999 78888888776543
Q ss_pred cccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCCC-------hHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 386 RRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~~-------~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
.|+|.....+...|..+.. .+.||||||||.+.+.+... .++.|+..|+... ....++
T Consensus 207 --~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~------------~~~~~v 272 (444)
T 2zan_A 207 --KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG------------VDNDGI 272 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS------------CCCSSC
T ss_pred --hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc------------cCCCCE
Confidence 5677777777777766543 34599999999997754221 2456666665321 123578
Q ss_pred EEEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 458 IFVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
+||+|||.++.++++|++||+ ++.++.|+.+++..|++.++. .....+++..+..|+....+.+|
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----------~~~~~l~~~~l~~la~~t~G~sg---- 338 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG----------STQNSLTEADFQELGRKTDGYSG---- 338 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT----------TSCEECCHHHHHHHHHHTTTCCH----
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh----------cCCCCCCHHHHHHHHHHcCCCCH----
Confidence 999999999999999999997 799999999999999998863 22346788999999988777777
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003349 537 ERNLAALARAAAVKVAEQE 555 (828)
Q Consensus 537 ~~~i~~l~~~a~~~~l~~~ 555 (828)
+.|..+|+.|++.++++.
T Consensus 339 -adl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 339 -ADISIIVRDALMQPVRKV 356 (444)
T ss_dssp -HHHHHHHHHHHTHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 889999999999988874
No 27
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.85 E-value=1.2e-20 Score=210.11 Aligned_cols=240 Identities=19% Similarity=0.241 Sum_probs=159.7
Q ss_pred cHHHHHHhhcccccchHHHHHHHHHHHHHh----hh--------------------CCCCCCCeEEEEcCCCCchhHHHH
Q 003349 303 DLKAAKERLDSDHYGLVRVKQRIIEYLAVR----KL--------------------KPDARGPVLCFVGPPGVGKTSLAS 358 (828)
Q Consensus 303 ~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~----~~--------------------~~~~~~~~lLL~GppGtGKT~la~ 358 (828)
++..+.+.|++.++||+.+++.+...+... .. .....+.++||+||||||||++|+
T Consensus 11 ~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 11 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHH
Confidence 456778889999999999999998877311 10 112345679999999999999999
Q ss_pred HHHHHhCCCeEEEecCCcCchhhhccCcccccccC-cchHHHHHHhcC-----CCCcEEEEecccccCCCCCCC------
Q 003349 359 SIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM-PGRLIDGLKRVG-----VCNPVMLLDEIDKTGSDVRGD------ 426 (828)
Q Consensus 359 ~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~-~g~l~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~------ 426 (828)
++|+.++.+++.++++..... .|+|.. .+.+...+.... ..++|+||||++++...+.+.
T Consensus 91 ~la~~l~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~ 162 (376)
T 1um8_A 91 TLAKHLDIPIAISDATSLTEA--------GYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDV 162 (376)
T ss_dssp HHHHHTTCCEEEEEGGGCC----------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-------------
T ss_pred HHHHHhCCCEEEecchhhhhc--------CcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceeccc
Confidence 999999999999988765421 455554 333444444322 135699999999998762111
Q ss_pred ----hHHHHHHhcCcccc------cccccccCCeeecCCCcEEEEecCCC------------------------------
Q 003349 427 ----PASALLEVLDPEQN------KTFNDHYLNVPFDLSKVIFVATANRA------------------------------ 466 (828)
Q Consensus 427 ----~~~~Ll~~ld~~~~------~~~~~~~~~~~~~~~~viiI~TtN~~------------------------------ 466 (828)
.++.|+++|+.... ..+........+..++++||+|+|..
T Consensus 163 ~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~ 242 (376)
T 1um8_A 163 SGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAI 242 (376)
T ss_dssp -CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTS
T ss_pred chHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHH
Confidence 48999999985321 11112222233566788899988731
Q ss_pred -----------CCCCccccCceE-EEEcCCCCHHHHHHHHHH---hhcHHHHHhcCCCCcccccCHHHHHHHHHH-hhhh
Q 003349 467 -----------QPIPPPLLDRME-VIELPGYTPEEKLRIAMR---HLIPRVLDQHGLGSEFLQIPEAMVKLVIQR-YTRE 530 (828)
Q Consensus 467 -----------~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~---~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~-~~~~ 530 (828)
..+.|+|++||+ ++.|++++.++...|+.. .+..+...........+.++++++.+|+.. |...
T Consensus 243 ~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 322 (376)
T 1um8_A 243 LHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERK 322 (376)
T ss_dssp GGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTT
T ss_pred HhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccc
Confidence 147899999995 899999999999999974 232322222212234578999999999985 5556
Q ss_pred hchHHHHHHHHHHHHHHHHH
Q 003349 531 AGVRNLERNLAALARAAAVK 550 (828)
Q Consensus 531 ~g~R~l~~~i~~l~~~a~~~ 550 (828)
.|+|.|++.|+.++..+..+
T Consensus 323 ~~~R~L~~~le~~~~~~~~~ 342 (376)
T 1um8_A 323 TGARGLRAIIEDFCLDIMFD 342 (376)
T ss_dssp CTGGGHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHhh
Confidence 89999999999988766554
No 28
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.84 E-value=4.5e-20 Score=199.27 Aligned_cols=236 Identities=20% Similarity=0.276 Sum_probs=166.0
Q ss_pred hcHHHHHHhhcccccchHHHHHHHHHHHHHhhhCC--------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 302 LDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKP--------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 302 ~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~--------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
.+...+...+.+.++|++.+++.+...+....... ...+.++||+||||||||++|+++++.++.+++.+++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~ 83 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 34567788899999999999999998876532111 1245689999999999999999999999999999998
Q ss_pred CCcCchhhhccCcccccccCcc-hHHHHHHhcC------CCCcEEEEecccccCCCCCCC--------hHHHHHHhcCcc
Q 003349 374 GGVKDEADIRGHRRTYIGSMPG-RLIDGLKRVG------VCNPVMLLDEIDKTGSDVRGD--------PASALLEVLDPE 438 (828)
Q Consensus 374 ~~~~~~~~l~g~~~~~vg~~~g-~l~~~~~~~~------~~~~vl~iDEid~l~~~~~~~--------~~~~Ll~~ld~~ 438 (828)
+...+. .|+|...+ .+...+...+ ..++|+||||+|++.++..+. .++.|+++|+..
T Consensus 84 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~ 155 (310)
T 1ofh_A 84 TKFTEV--------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS 155 (310)
T ss_dssp GGGSSC--------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCC
T ss_pred hhcccC--------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCC
Confidence 875432 35554433 2333333221 124699999999998765211 167888888753
Q ss_pred cccccccccCCeeecCCCcEEEEec----CCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHh---hcHHHHHhcCCCC
Q 003349 439 QNKTFNDHYLNVPFDLSKVIFVATA----NRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRH---LIPRVLDQHGLGS 510 (828)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~viiI~Tt----N~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~---l~~~~~~~~~~~~ 510 (828)
. +.... ...+..+++||+|+ +.+..++++|++||+ .|.|++|+.+++.+|++.. +............
T Consensus 156 ~---~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 230 (310)
T 1ofh_A 156 T---VSTKH--GMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG 230 (310)
T ss_dssp E---EEETT--EEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTT
T ss_pred e---Eeccc--ccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 2 11111 13455678999984 566789999999997 6999999999999999852 2222111111112
Q ss_pred cccccCHHHHHHHHHHhhh------hhchHHHHHHHHHHHHHHHHH
Q 003349 511 EFLQIPEAMVKLVIQRYTR------EAGVRNLERNLAALARAAAVK 550 (828)
Q Consensus 511 ~~~~i~~~~l~~l~~~~~~------~~g~R~l~~~i~~l~~~a~~~ 550 (828)
..+.+++++++++++.+.. ..++|.+.+.++.++..++.+
T Consensus 231 ~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~ 276 (310)
T 1ofh_A 231 VNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 276 (310)
T ss_dssp CEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHH
T ss_pred CeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcC
Confidence 2468999999999986543 478999999999888765543
No 29
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=99.83 E-value=6.7e-20 Score=186.67 Aligned_cols=145 Identities=11% Similarity=0.042 Sum_probs=115.5
Q ss_pred ccccccceeEEEEEEeccCccCCCCceEEEEEEEEeeEEEEee-ecccCCeEEEEEEEeccchhhhhccCCChHHHHHHH
Q 003349 42 VIHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQE-LSTRGTYYTARISSLEMTKIEMEQVEQDPDFIALSR 120 (828)
Q Consensus 42 ~~~l~~vGt~a~I~~~~~~~~~~dG~~~~~I~~~G~~RfrI~~-~~~~~~y~~a~Ve~l~~~~~~~~~~~~~~~~~~l~~ 120 (828)
.+++|+|||+|+|.++.++ ||| ++.|+++|.+||||.+ +...+||++|+|++++++ +..+...+..++.+
T Consensus 59 ~~dl~~vGt~a~I~~~~~l---pdG--~~~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~----~~~~~~~e~~al~~ 129 (210)
T 1zbo_A 59 REVLARAGTMARIDHWEAP---MPA--LLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDD----APLEVPPELARSAS 129 (210)
T ss_dssp CCCEEEEEEEEEEEEEECS---STT--CEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCC----CCCCCCGGGHHHHH
T ss_pred cCchhceEEEEEEEEEEeC---CCc--eEEEEEEEEEEEEEEEEeecCCCcEEEEEEEcCCC----CCCCCcHHHHHHHH
Confidence 5789999999999999999 999 9999999999999965 678899999999999863 11123556788999
Q ss_pred HHHHHHHHHHHHhhhccCchhhHHHhhccCChHHHHHHHHHcCCCCHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Q 003349 121 QFKATAMELISVLEQKQKTGGRTKVLLETVPIHKLADIFVASFEISFEEQLVMLDSVDLKVRLSKATELVDRHLQSIR 198 (828)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~~la~~lpl~~~~kq~LLe~~d~~~Rl~~l~~~l~~~~~~l~ 198 (828)
.+++++.+|..... ...........+++||.||+|+||+.+|++.++||+|||+ |+.+|++.++.+|++++..++
T Consensus 130 ~l~~~~~~~~~~~~--~~~~~~l~~~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~-d~~~Rl~~l~~~L~~e~~~~~ 204 (210)
T 1zbo_A 130 ALGRLIARLQREGV--PPHIMPMAAPFRLDDCGWVADRWAEMLSLPPADKARLLLL-PPLDRLREIDAVLAADGHALE 204 (210)
T ss_dssp HHHHHHHHHHHTTC--CTTTCSBCSCCCTTCHHHHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhcc--ccccccCCCcCCCCCHHHHHHHHHHhCCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHhhhhh
Confidence 99999999887640 0000011114467799999999999999999999999999 999999999999998887663
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.82 E-value=1.4e-19 Score=195.78 Aligned_cols=217 Identities=24% Similarity=0.297 Sum_probs=163.9
Q ss_pred HhcHHHHHHhhcccccchHHHHHHHHHHHHHhh---------hCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC------
Q 003349 301 DLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRK---------LKPDARGPVLCFVGPPGVGKTSLASSIASALG------ 365 (828)
Q Consensus 301 ~~~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~---------~~~~~~~~~lLL~GppGtGKT~la~~la~~l~------ 365 (828)
...+.++...++.+++|++++++.+.+++.... ......+.++||+||||||||++|+++|+.++
T Consensus 19 ~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~ 98 (309)
T 3syl_A 19 GSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR 98 (309)
T ss_dssp HTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS
T ss_pred cccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC
Confidence 456777888888899999999999998776432 12234556899999999999999999999883
Q ss_pred -CCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCC-----CChHHHHHHhcCccc
Q 003349 366 -RKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVR-----GDPASALLEVLDPEQ 439 (828)
Q Consensus 366 -~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~-----~~~~~~Ll~~ld~~~ 439 (828)
.+++.++++.... .++|.....+...|..+. ++|+||||+|.+..... .+.++.|++.|+..
T Consensus 99 ~~~~~~~~~~~l~~---------~~~g~~~~~~~~~~~~~~--~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~- 166 (309)
T 3syl_A 99 KGHLVSVTRDDLVG---------QYIGHTAPKTKEVLKRAM--GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN- 166 (309)
T ss_dssp SCCEEEECGGGTCC---------SSTTCHHHHHHHHHHHHT--TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-
T ss_pred CCcEEEEcHHHhhh---------hcccccHHHHHHHHHhcC--CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-
Confidence 2677777555432 456666666777777664 56999999999975431 12367888888742
Q ss_pred ccccccccCCeeecCCCcEEEEecCCCC-----CCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCccc
Q 003349 440 NKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFL 513 (828)
Q Consensus 440 ~~~~~~~~~~~~~~~~~viiI~TtN~~~-----~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~ 513 (828)
..+++||+|+|... .++|+|++||+ +|.|++|+.+++..|++.++.. ..+
T Consensus 167 --------------~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~----------~~~ 222 (309)
T 3syl_A 167 --------------RDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD----------QNY 222 (309)
T ss_dssp --------------TTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH----------TTC
T ss_pred --------------CCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH----------cCC
Confidence 23578999998753 45799999995 8999999999999999988642 236
Q ss_pred ccCHHHHHHHHHHhh------hhhchHHHHHHHHHHHHHHHHHHHH
Q 003349 514 QIPEAMVKLVIQRYT------REAGVRNLERNLAALARAAAVKVAE 553 (828)
Q Consensus 514 ~i~~~~l~~l~~~~~------~~~g~R~l~~~i~~l~~~a~~~~l~ 553 (828)
.++++++..++..+. +..++|.+++.++.++..++.+.+.
T Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 223 QMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp EECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 789999998887532 3344899999999988877777665
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=202.95 Aligned_cols=207 Identities=22% Similarity=0.299 Sum_probs=152.6
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCC------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~ 386 (828)
.+++|++.+++.+.+++..+...+. ..+.++||+||||||||++|+++|..++.+++.++++....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~-------- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS-------- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC----------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc--------
Confidence 4689999999999998876554322 24568999999999999999999999999999999877554
Q ss_pred ccccccCcchHHHHHHhcCCCC-cEEEEecccccCCCCCCC-------hHHHHHHhcCcccccccccccCCeeecCCCcE
Q 003349 387 RTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458 (828)
Q Consensus 387 ~~~vg~~~g~l~~~~~~~~~~~-~vl~iDEid~l~~~~~~~-------~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vi 458 (828)
.|.|.....+...|..+.... .||||||||.+....... .++.|+..|+..... ...+++
T Consensus 187 -~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----------~~~~v~ 254 (389)
T 3vfd_A 187 -KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA-----------GDDRVL 254 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----------------CEE
T ss_pred -cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc-----------CCCCEE
Confidence 466777666667776554333 599999999997654221 145566666532110 124689
Q ss_pred EEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 459 FVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 459 iI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
||+|||.++.+++++++||. +++|+.|+.+++..|++.++. ..+..++++.+..++....+..+
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~----------~~~~~l~~~~~~~la~~~~g~~~----- 319 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC----------KQGSPLTQKELAQLARMTDGYSG----- 319 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT----------TSCCCSCHHHHHHHHHHTTTCCH-----
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH----------hcCCCCCHHHHHHHHHHcCCCCH-----
Confidence 99999999999999999996 799999999999999988752 23456889999999987766665
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003349 538 RNLAALARAAAVKVAEQ 554 (828)
Q Consensus 538 ~~i~~l~~~a~~~~l~~ 554 (828)
+.|..+|+.|+...+++
T Consensus 320 ~~l~~L~~~a~~~~~re 336 (389)
T 3vfd_A 320 SDLTALAKDAALGPIRE 336 (389)
T ss_dssp HHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78888999888887776
No 32
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.82 E-value=3e-20 Score=200.30 Aligned_cols=204 Identities=21% Similarity=0.307 Sum_probs=149.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhC-------CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccC
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~-------~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~ 385 (828)
++++|++++++.+.+.+..+... ...++.++||+||||||||++|+++|+.++.+++.++++....
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~------- 87 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT------- 87 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH-------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh-------
Confidence 46899999999999988765322 1245678999999999999999999999999998887655322
Q ss_pred cccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCC----------CChHHHHHHhcCcccccccccccCCeeecC
Q 003349 386 RRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVR----------GDPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~----------~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.|+|.....+...|..+.. .+.++||||+|.+.+.+. ...++.|+..|+... ..
T Consensus 88 --~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-------------~~ 152 (301)
T 3cf0_A 88 --MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-------------TK 152 (301)
T ss_dssp --HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-------------TT
T ss_pred --hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-------------CC
Confidence 4567776677777776543 345999999998864321 112577888776321 13
Q ss_pred CCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 455 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 455 ~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
.+++||+|||.++.+++++++ ||+ .++|+.|+.++|.+|++.++.. .++. ..++ +..++....+..
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~-----~~~~---~~~~---~~~la~~~~g~s 221 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK-----SPVA---KDVD---LEFLAKMTNGFS 221 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-----SCBC---SSCC---HHHHHHTCSSCC
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc-----CCCC---ccch---HHHHHHHcCCCC
Confidence 468999999999999999998 997 7999999999999999887631 2111 2233 344555444455
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
| +.|.++|+.|++.++++
T Consensus 222 g-----~dl~~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 222 G-----ADLTEICQRACKLAIRE 239 (301)
T ss_dssp H-----HHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHHHH
Confidence 5 57788888888877765
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=198.93 Aligned_cols=207 Identities=23% Similarity=0.310 Sum_probs=156.3
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCC------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~ 386 (828)
++++|++.+++.+.+.+..+...+. ..+.++||+||||||||++|+++|+.++.+++.++++....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~-------- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-------- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC--------
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc--------
Confidence 4689999999999998876543322 34568999999999999999999999999999999876543
Q ss_pred ccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCCC-------hHHHHHHhcCcccccccccccCCeeecCCCcE
Q 003349 387 RTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458 (828)
Q Consensus 387 ~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~~-------~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vi 458 (828)
.|.|.....+...|..+.. .+.||||||||.+.+.+... .++.|+..|+.... ....+++
T Consensus 156 -~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-----------~~~~~v~ 223 (357)
T 3d8b_A 156 -KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT-----------SSEDRIL 223 (357)
T ss_dssp -SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC---------------CCCCEE
T ss_pred -cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc-----------cCCCCEE
Confidence 4556555555555655432 24599999999997654211 14556666653210 0124689
Q ss_pred EEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 459 FVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 459 iI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
||+|||.++.+++++++||+ .+.++.|+.+++.+|++.++. .....++++.+..++..+.+..|
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~----------~~~~~l~~~~l~~la~~t~G~s~----- 288 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMS----------KEQCCLSEEEIEQIVQQSDAFSG----- 288 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH----------TSCBCCCHHHHHHHHHHTTTCCH-----
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh----------hcCCCccHHHHHHHHHHcCCCCH-----
Confidence 99999999999999999997 799999999999999988752 12356889999999987766666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003349 538 RNLAALARAAAVKVAEQ 554 (828)
Q Consensus 538 ~~i~~l~~~a~~~~l~~ 554 (828)
+.|..+|++|+...++.
T Consensus 289 ~dl~~l~~~a~~~~ir~ 305 (357)
T 3d8b_A 289 ADMTQLCREASLGPIRS 305 (357)
T ss_dssp HHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78889999998888876
No 34
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=2.2e-19 Score=193.05 Aligned_cols=208 Identities=22% Similarity=0.293 Sum_probs=153.6
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCC------CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPD------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~------~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~ 386 (828)
.+++|++.+++.+.+.+..+..++. .++.++||+||||||||++|+++|+.++.+++.++++....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-------- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS-------- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS--------
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh--------
Confidence 4689999999999998876543221 34568999999999999999999999999999998876543
Q ss_pred ccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCC-------ChHHHHHHhcCcccccccccccCCeeecCCCcE
Q 003349 387 RTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458 (828)
Q Consensus 387 ~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vi 458 (828)
.+.|.....+...+..+.. .+.++||||+|.+...... ..++.|+..++..... ....+++
T Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----------~~~~~v~ 161 (297)
T 3b9p_A 93 -KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN----------PDGDRIV 161 (297)
T ss_dssp -SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----------------CEE
T ss_pred -cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc----------CCCCcEE
Confidence 3455544455555544432 3459999999999765421 1134566666532110 0124589
Q ss_pred EEEecCCCCCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 459 FVATANRAQPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 459 iI~TtN~~~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
||+|||.++.+++++++||+ .+.++.|+.+++..|++.++. . ....++++.+..++....+..|
T Consensus 162 vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~-----~-----~~~~~~~~~~~~la~~~~g~~~----- 226 (297)
T 3b9p_A 162 VLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ-----K-----QGSPLDTEALRRLAKITDGYSG----- 226 (297)
T ss_dssp EEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHG-----G-----GSCCSCHHHHHHHHHHTTTCCH-----
T ss_pred EEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHH-----h-----cCCCCCHHHHHHHHHHcCCCCH-----
Confidence 99999999999999999996 799999999999999988753 1 1345788899998887666665
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003349 538 RNLAALARAAAVKVAEQ 554 (828)
Q Consensus 538 ~~i~~l~~~a~~~~l~~ 554 (828)
+.|..+|+.|+..++++
T Consensus 227 ~~l~~l~~~a~~~a~r~ 243 (297)
T 3b9p_A 227 SDLTALAKDAALEPIRE 243 (297)
T ss_dssp HHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888999998888876
No 35
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.80 E-value=4.9e-19 Score=189.94 Aligned_cols=166 Identities=17% Similarity=0.249 Sum_probs=113.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhc-----CCCCcEEEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV-----GVCNPVMLL 413 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~-----~~~~~vl~i 413 (828)
.+.++||+||||||||++|+++|+.++.+++.++++.+.+ .|+|..++.+.+.|..+ ...++|+||
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~---------~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~i 105 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAAEIIRKGNMCCLFI 105 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC---------C---HHHHHHHHHHHHHHHHHTTSSCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh---------ccCchhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4458999999999999999999999999999999876543 57788888888888776 344679999
Q ss_pred ecccccCCCCCCCh---------HHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccC--ceEE-EE
Q 003349 414 DEIDKTGSDVRGDP---------ASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLD--RMEV-IE 481 (828)
Q Consensus 414 DEid~l~~~~~~~~---------~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~--R~~~-i~ 481 (828)
||||++.+...++. ++.|+++||+.+...+...+ ...+.++++||+|||.++.++++|++ ||+. |+
T Consensus 106 DEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~--~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~ 183 (293)
T 3t15_A 106 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY--NKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW 183 (293)
T ss_dssp ECCC--------------CHHHHHHHHHHHHHCCC-------------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE
T ss_pred echhhhcCCCCCCccccchHHHHHHHHHHHhcccccccccccc--ccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe
Confidence 99999988553322 48899999855432222211 12345689999999999999999996 9984 65
Q ss_pred cCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 482 LPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 482 ~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
+ |+.+++.+|++.++.+ ..++.+.+..+...|++
T Consensus 184 ~--P~~~~r~~Il~~~~~~------------~~~~~~~l~~~~~~~~~ 217 (293)
T 3t15_A 184 A--PTREDRIGVCTGIFRT------------DNVPAEDVVKIVDNFPG 217 (293)
T ss_dssp C--CCHHHHHHHHHHHHGG------------GCCCHHHHHHHHHHSCS
T ss_pred C--cCHHHHHHHHHHhccC------------CCCCHHHHHHHhCCCCc
Confidence 4 5999999999977531 24566677777777765
No 36
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=186.03 Aligned_cols=206 Identities=22% Similarity=0.273 Sum_probs=135.8
Q ss_pred cccccchHHHHHHHHHHHHHhhhC------CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccC
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLK------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~------~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~ 385 (828)
.++++|++.+++.+.+++...... ....+.++||+||||||||++|+++|+.++.+++.++++...+
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~------- 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVE------- 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSS-------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHh-------
Confidence 357899999999998877653221 1134568999999999999999999999999999999887543
Q ss_pred cccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCC--------Ch---HHHHHHhcCcccccccccccCCeeec
Q 003349 386 RRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRG--------DP---ASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~--------~~---~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
.+.|.....+...|..+.. .+.|+||||+|.+...+.. .. .+.|++.++... .
T Consensus 78 --~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-------------~ 142 (262)
T 2qz4_A 78 --VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-------------T 142 (262)
T ss_dssp --SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC-------------T
T ss_pred --hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-------------C
Confidence 3444444455556655432 2459999999999654311 11 233444333210 1
Q ss_pred CCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHH-HHHHHHHHhhh
Q 003349 454 LSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYTR 529 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~-~l~~l~~~~~~ 529 (828)
..++++|+|||.++.+++++++ ||+ .++|+.|+.+++.+|++.++.. .+ +..+.+ ....++....+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~-----~~-----~~~~~~~~~~~l~~~~~g 212 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS-----LK-----LTQSSTFYSQRLAELTPG 212 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH-----TT-----CCBTHHHHHHHHHHTCTT
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh-----CC-----CCcchhhHHHHHHHHCCC
Confidence 3468999999999999999999 996 7999999999999999888632 22 233444 34556665544
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 530 EAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 530 ~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
..| +.|..+|+.|+..++++
T Consensus 213 ~~~-----~~l~~l~~~a~~~a~~~ 232 (262)
T 2qz4_A 213 FSG-----ADIANICNEAALHAARE 232 (262)
T ss_dssp CCH-----HHHHHHHHHHHTC----
T ss_pred CCH-----HHHHHHHHHHHHHHHHc
Confidence 444 57777887777766544
No 37
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.79 E-value=1.1e-18 Score=197.48 Aligned_cols=204 Identities=24% Similarity=0.300 Sum_probs=148.1
Q ss_pred cccccchHHHHHHHHHHHHHhhh------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccC
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~------~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~ 385 (828)
.++++|++++++.+.+.+..... .....+.++||+||||||||++|+++|+.++.+++.++++....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~------- 87 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE------- 87 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT-------
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH-------
Confidence 35689999999999887764321 11234457999999999999999999999999999998876543
Q ss_pred cccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCC-----C-----hHHHHHHhcCcccccccccccCCeeecC
Q 003349 386 RRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~-----~-----~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.|+|.....+...|..+.. .++||||||+|.+.+.+.. + .++.|+..|+.. . ..
T Consensus 88 --~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~-----~--------~~ 152 (476)
T 2ce7_A 88 --LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF-----D--------SK 152 (476)
T ss_dssp --CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS-----C--------GG
T ss_pred --HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc-----C--------CC
Confidence 3555555566667766543 3459999999999876521 1 245666666521 1 12
Q ss_pred CCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHH-HHHHHHHHhhhh
Q 003349 455 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYTRE 530 (828)
Q Consensus 455 ~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~-~l~~l~~~~~~~ 530 (828)
.+++||+|||+++.+++++++ ||+ .|.|+.|+.++|.+|++.++.+ . .+.++ .+..++..+.+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~-----~-------~l~~~v~l~~la~~t~G~ 220 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN-----K-------PLAEDVNLEIIAKRTPGF 220 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-----S-------CBCTTCCHHHHHHTCTTC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh-----C-------CCcchhhHHHHHHhcCCC
Confidence 368999999999999999997 998 7999999999999999877531 1 12222 255667766666
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHH
Q 003349 531 AGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 531 ~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.| +.|.++|+.|+..+.++
T Consensus 221 sg-----adL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 221 VG-----ADLENLVNEAALLAARE 239 (476)
T ss_dssp CH-----HHHHHHHHHHHHHHHHT
T ss_pred cH-----HHHHHHHHHHHHHHHHc
Confidence 66 77888888888877654
No 38
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.78 E-value=8.1e-19 Score=186.18 Aligned_cols=209 Identities=21% Similarity=0.272 Sum_probs=144.3
Q ss_pred hhcccccchHHHHHHHHHHHHHhhhC-------CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhh
Q 003349 310 RLDSDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADI 382 (828)
Q Consensus 310 ~l~~~i~G~~~~~~~l~~~l~~~~~~-------~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l 382 (828)
.-..++.|++++++.+.+.+..+... .-..+.+++|+||||||||+|++++|..++..++.++......
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~---- 82 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN---- 82 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh----
Confidence 34567999999999998876544322 1234456999999999999999999999988887777655432
Q ss_pred ccCcccccccCcchHHHHHHhc-CCCCcEEEEecccccCCCCCC-------ChHHHHHHhcCcccccccccccCCeeecC
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRV-GVCNPVMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~-~~~~~vl~iDEid~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.|.|.....+...|..+ ...+.++|+||+|.+...+.. +..+.++..|+..+. .
T Consensus 83 -----~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~-------------~ 144 (274)
T 2x8a_A 83 -----MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA-------------R 144 (274)
T ss_dssp -----STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS-------------T
T ss_pred -----hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc-------------c
Confidence 34555455566666654 233559999999997654311 224556666654321 2
Q ss_pred CCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccC-HHHHHHHHHH--hh
Q 003349 455 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIP-EAMVKLVIQR--YT 528 (828)
Q Consensus 455 ~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~-~~~l~~l~~~--~~ 528 (828)
+.+++++++|.++.+|+++++ ||+ .|+++.|+.++|.+|++.++.. . ....++ +..+..++.. +.
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~-----~----~~~~~~~~~~~~~la~~~~~~ 215 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKN-----G----TKPPLDADVNLEAIAGDLRCD 215 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTT-----T----BTTBBCTTCCHHHHHTCSGGG
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhc-----c----cCCCCccccCHHHHHHhhccC
Confidence 357899999999999999998 998 7999999999999999987531 0 011111 2224555653 33
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 529 REAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 529 ~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+++| ++|..+|++|++.++++
T Consensus 216 g~sg-----adl~~l~~~a~~~a~~~ 236 (274)
T 2x8a_A 216 CYTG-----ADLSALVREASICALRQ 236 (274)
T ss_dssp SCCH-----HHHHHHHHHHHHHHHHH
T ss_pred CcCH-----HHHHHHHHHHHHHHHHH
Confidence 5666 89999999999999887
No 39
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.78 E-value=3.3e-18 Score=179.97 Aligned_cols=204 Identities=23% Similarity=0.302 Sum_probs=141.9
Q ss_pred cccccchHHHHHHHHHHHHHhhh---C---CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccC
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKL---K---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~---~---~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~ 385 (828)
.++++|++.+++.+.+.+..... . ....+.+++|+||||||||++|+++|+.++.+++.++++....
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~------- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE------- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT-------
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH-------
Confidence 35789999999999877654211 0 1123557999999999999999999999999998888776543
Q ss_pred cccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC----------ChHHHHHHhcCcccccccccccCCeeecC
Q 003349 386 RRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG----------DPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~----------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.+.|.....+...|..+... +.++||||+|.+...... ..++.++..++... ..
T Consensus 84 --~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~ 148 (257)
T 1lv7_A 84 --MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-------------GN 148 (257)
T ss_dssp --SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-------------SS
T ss_pred --HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-------------cC
Confidence 35566666666777665433 349999999999875421 11344555554210 13
Q ss_pred CCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHH-HHHHHHHhhhh
Q 003349 455 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAM-VKLVIQRYTRE 530 (828)
Q Consensus 455 ~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~-l~~l~~~~~~~ 530 (828)
.++++|+|||.++.+++++++ ||+ .+.|+.|+.++|.+|++.++. .. .+++++ +..++..+.+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~-----~~-------~l~~~~~~~~la~~~~G~ 216 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR-----RV-------PLAPDIDAAIIARGTPGF 216 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT-----TS-------CBCTTCCHHHHHHTCTTC
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHh-----cC-------CCCccccHHHHHHHcCCC
Confidence 468999999999999999998 997 799999999999999987753 11 222222 44455544443
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHH
Q 003349 531 AGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 531 ~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.+ +.|.++|+.|+..+..+
T Consensus 217 ~~-----~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 217 SG-----ADLANLVNEAALFAARG 235 (257)
T ss_dssp CH-----HHHHHHHHHHHHHHHHT
T ss_pred CH-----HHHHHHHHHHHHHHHHh
Confidence 33 56667777777776654
No 40
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.78 E-value=1e-18 Score=186.74 Aligned_cols=207 Identities=23% Similarity=0.346 Sum_probs=147.2
Q ss_pred ccccchHHHHHHHHHHHHHhhhC-------CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccC
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLK-------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~-------~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~ 385 (828)
++++|++++++.+.+++..+... ....+.++||+||||||||++|+++|+.++.+++.++++....
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~------- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK------- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC-------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH-------
Confidence 56899999999999888654322 1245678999999999999999999999999999998766433
Q ss_pred cccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC-------ChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 386 RRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
.+.|.....+...+..+... +.|+||||+|.+.++..+ ..+..|+++++.... +. ...++
T Consensus 90 --~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~--------~~~~~ 157 (285)
T 3h4m_A 90 --KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG--FD--------ARGDV 157 (285)
T ss_dssp --CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT--TC--------SSSSE
T ss_pred --hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC--CC--------CCCCE
Confidence 45565555666666554433 349999999999754421 124555555543210 00 12468
Q ss_pred EEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchH
Q 003349 458 IFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 534 (828)
Q Consensus 458 iiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R 534 (828)
+||+|||.++.+++++++ ||+ ++.|+.|+.+++.+|++.++. ..++ . .+..+..++....+..+
T Consensus 158 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~-----~~~~-----~-~~~~~~~l~~~~~g~~~-- 224 (285)
T 3h4m_A 158 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTR-----KMNL-----A-EDVNLEEIAKMTEGCVG-- 224 (285)
T ss_dssp EEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHT-----TSCB-----C-TTCCHHHHHHHCTTCCH--
T ss_pred EEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHh-----cCCC-----C-CcCCHHHHHHHcCCCCH--
Confidence 999999999999999999 997 799999999999999987752 1111 1 12224555665544444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003349 535 NLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 535 ~l~~~i~~l~~~a~~~~l~~ 554 (828)
+.|..+|+.|+..++.+
T Consensus 225 ---~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 225 ---AELKAICTEAGMNAIRE 241 (285)
T ss_dssp ---HHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHh
Confidence 67778888888887766
No 41
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.78 E-value=4.9e-19 Score=202.16 Aligned_cols=205 Identities=23% Similarity=0.309 Sum_probs=155.8
Q ss_pred cccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhcc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g 384 (828)
..+++|++.+++.+.+.+......+ ...+.++||+||||||||++|+++|+.++.+++.++++.+.+
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~------ 276 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS------ 276 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT------
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh------
Confidence 3468999999999998887643221 245668999999999999999999999999999999876543
Q ss_pred CcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC-------ChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 385 HRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG-------DPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~-------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.|.|...+.+...|..+... +.+|||||||.+.+++.. ..++.|+..|+... ...+
T Consensus 277 ---~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-------------~~~~ 340 (489)
T 3hu3_A 277 ---KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------------QRAH 340 (489)
T ss_dssp ---SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-------------TTSC
T ss_pred ---hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-------------cCCc
Confidence 46677777777788776543 349999999999876532 12677888887421 1346
Q ss_pred cEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 457 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
++||+|||+++.+++++++ ||+ .|+|+.|+.+++.+|++.++.. .. +. .+..+..++....+..|
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~-----~~-----l~-~~~~l~~la~~t~g~s~- 408 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-----MK-----LA-DDVDLEQVANETHGHVG- 408 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT-----SC-----BC-TTCCHHHHHHTCTTCCH-
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc-----CC-----Cc-chhhHHHHHHHccCCcH-
Confidence 8999999999999999998 896 7999999999999999987531 11 11 12234556665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003349 534 RNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 534 R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+.|..+|++|+..++++
T Consensus 409 ----~dL~~L~~~A~~~a~r~ 425 (489)
T 3hu3_A 409 ----ADLAALCSEAALQAIRK 425 (489)
T ss_dssp ----HHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHHh
Confidence 78889999999998887
No 42
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.74 E-value=1.4e-17 Score=189.66 Aligned_cols=205 Identities=24% Similarity=0.309 Sum_probs=147.7
Q ss_pred hcccccchHHHHHHHHHHHHHhhh---C---CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhcc
Q 003349 311 LDSDHYGLVRVKQRIIEYLAVRKL---K---PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 311 l~~~i~G~~~~~~~l~~~l~~~~~---~---~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g 384 (828)
..++++|++++++.+.+.+..... . ....+.+++|+||||||||+||+++|..++.+++.++++.+..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~------ 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE------ 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS------
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH------
Confidence 345799999999999887754221 1 1123456999999999999999999999999999988766433
Q ss_pred CcccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCC-----C-----hHHHHHHhcCcccccccccccCCeeec
Q 003349 385 HRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~-----~-----~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
.++|.....+...|..+.. .+.++||||||.+...+.. + ..+.|+..|+..+ .
T Consensus 103 ---~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-------------~ 166 (499)
T 2dhr_A 103 ---MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-------------K 166 (499)
T ss_dssp ---SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-------------S
T ss_pred ---hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-------------c
Confidence 3455545556677776653 3469999999998765421 1 1355666665322 1
Q ss_pred CCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHH-HHHHHHHhhh
Q 003349 454 LSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAM-VKLVIQRYTR 529 (828)
Q Consensus 454 ~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~-l~~l~~~~~~ 529 (828)
...++++++||.++.+++++++ ||+ .|.|+.|+.++|.+|++.++. .+.+++++ +..++..+.+
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~------------~~~l~~dv~l~~lA~~t~G 234 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------------GKPLAEDVDLALLAKRTPG 234 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS------------SSCCCCSSTTHHHHTTSCS
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh------------cCCCChHHHHHHHHHhcCC
Confidence 2357999999999999999998 887 799999999999999987752 12333332 5666766666
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 530 EAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 530 ~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+.| +.|.++|+.|+..+.++
T Consensus 235 ~~g-----adL~~lv~~Aa~~A~~~ 254 (499)
T 2dhr_A 235 FVG-----ADLENLLNEAALLAARE 254 (499)
T ss_dssp CCH-----HHHHHHHHHHHHHHTTT
T ss_pred CCH-----HHHHHHHHHHHHHHHHh
Confidence 666 77888888887766543
No 43
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.73 E-value=8.1e-17 Score=176.32 Aligned_cols=200 Identities=20% Similarity=0.262 Sum_probs=146.9
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccccccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGS 392 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~ 392 (828)
.+++|++.+++.+..++...... .....++||+||||||||++|+++|+.++.+++.++++....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-------------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK-------------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS--------------
T ss_pred HHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc--------------
Confidence 46899999999999888765432 234457999999999999999999999999999988765422
Q ss_pred CcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccc---cCCeeecCCCcEEEEecCCCCCC
Q 003349 393 MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDH---YLNVPFDLSKVIFVATANRAQPI 469 (828)
Q Consensus 393 ~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~---~~~~~~~~~~viiI~TtN~~~~l 469 (828)
.+.+...+... ..+.++|||||+.+.+.. ++.|++.|+.......... .....++..++++|++||....+
T Consensus 94 -~~~~~~~~~~~-~~~~vl~lDEi~~l~~~~----~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l 167 (338)
T 3pfi_A 94 -SGDLAAILTNL-SEGDILFIDEIHRLSPAI----EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGML 167 (338)
T ss_dssp -HHHHHHHHHTC-CTTCEEEEETGGGCCHHH----HHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGS
T ss_pred -hhHHHHHHHhc-cCCCEEEEechhhcCHHH----HHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcccc
Confidence 23344444442 245699999999998765 8899999876432211111 01223444578999999999999
Q ss_pred CccccCce-EEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 003349 470 PPPLLDRM-EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 545 (828)
Q Consensus 470 ~~aLl~R~-~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~ 545 (828)
+++|++|| .++.|++|+.+++..+++.++. . .++.++++++..++..+ ..++|.+.+.++.++.
T Consensus 168 ~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~-----~-----~~~~~~~~~~~~l~~~~--~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 168 SNPLRDRFGMQFRLEFYKDSELALILQKAAL-----K-----LNKTCEEKAALEIAKRS--RSTPRIALRLLKRVRD 232 (338)
T ss_dssp CHHHHTTCSEEEECCCCCHHHHHHHHHHHHH-----H-----TTCEECHHHHHHHHHTT--TTCHHHHHHHHHHHHH
T ss_pred CHHHHhhcCEEeeCCCcCHHHHHHHHHHHHH-----h-----cCCCCCHHHHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 99999999 5899999999999999987753 1 23578999999998843 3456776666665543
No 44
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.71 E-value=6.1e-17 Score=169.91 Aligned_cols=203 Identities=25% Similarity=0.337 Sum_probs=135.4
Q ss_pred ccccchHHHHHHHHHHHHHhhh------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~------~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~ 386 (828)
++++|++.++..+.+....... ..-..+.+++|+|||||||||+++++++.++.+++.++......
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~-------- 87 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE-------- 87 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH--------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH--------
Confidence 4678888888888766543211 01123446999999999999999999999988877776543211
Q ss_pred ccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCC-----C-----hHHHHHHhcCcccccccccccCCeeecCC
Q 003349 387 RTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 387 ~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~-----~-----~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
.+.+.....+...|..+.. .+.++|+||+|.+...... + ..+.++..|+..+. ..
T Consensus 88 -~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-------------~~ 153 (254)
T 1ixz_A 88 -MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-------------DT 153 (254)
T ss_dssp -SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-------------TC
T ss_pred -HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-------------CC
Confidence 1233333345556666542 3459999999988654321 1 13455555543211 23
Q ss_pred CcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHH-HHHHHHHHhhhhh
Q 003349 456 KVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYTREA 531 (828)
Q Consensus 456 ~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~-~l~~l~~~~~~~~ 531 (828)
.+++++++|.++.+++++++ ||+ .++|+.|+.++|.+|++.++. + ..++++ .+..++..+.+..
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~-------~-----~~~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR-------G-----KPLAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT-------T-----SCBCTTCCHHHHHHTCTTCC
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc-------C-----CCCCcccCHHHHHHHcCCCC
Confidence 46889999999999999998 887 799999999999999987642 1 223333 2566777666666
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
| +.|.++|+.|+..+.++
T Consensus 222 ~-----~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 222 G-----ADLENLLNEAALLAARE 239 (254)
T ss_dssp H-----HHHHHHHHHHHHHHHHT
T ss_pred H-----HHHHHHHHHHHHHHHHh
Confidence 5 67778888777766654
No 45
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.70 E-value=2.8e-19 Score=216.61 Aligned_cols=206 Identities=21% Similarity=0.319 Sum_probs=153.9
Q ss_pred hcccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhc
Q 003349 311 LDSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 383 (828)
Q Consensus 311 l~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~ 383 (828)
...+++|++++++.+.+++..+...+ ..++.++||+||||||||++|+++|+.++.+++.++++.+.+
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~----- 549 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT----- 549 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT-----
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh-----
Confidence 45678999999999998876543322 135668999999999999999999999999999888777654
Q ss_pred cCcccccccCcchHHHHHHhcCCCC-cEEEEecccccCCCCCCC----------hHHHHHHhcCcccccccccccCCeee
Q 003349 384 GHRRTYIGSMPGRLIDGLKRVGVCN-PVMLLDEIDKTGSDVRGD----------PASALLEVLDPEQNKTFNDHYLNVPF 452 (828)
Q Consensus 384 g~~~~~vg~~~g~l~~~~~~~~~~~-~vl~iDEid~l~~~~~~~----------~~~~Ll~~ld~~~~~~~~~~~~~~~~ 452 (828)
.|+|..++.+...|..+.... .|+||||||.+...+.+. .++.|++.|+...
T Consensus 550 ----~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~------------- 612 (806)
T 1ypw_A 550 ----MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS------------- 612 (806)
T ss_dssp ----CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----------------
T ss_pred ----hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-------------
Confidence 688888888888887765433 499999999998766432 1467777777431
Q ss_pred cCCCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 453 DLSKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 453 ~~~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
...+++||+|||+++.+++++++ ||+ .|+|+.|+.+++.+|++.++.+..+. ..+. +..++....+
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~------~~~~-----l~~la~~t~g 681 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA------KDVD-----LEFLAKMTNG 681 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----------CCC-----CSCSCGGGSS
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC------cccC-----HHHHHHhccc
Confidence 23578999999999999999999 998 79999999999999999886421111 0111 2233444445
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 530 EAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 530 ~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.+| +.|..+|+.|+..++++
T Consensus 682 ~sg-----adi~~l~~~a~~~a~~~ 701 (806)
T 1ypw_A 682 FSG-----ADLTEICQRACKLAIRE 701 (806)
T ss_dssp SCC-----HHHHHHHHHHHHHHHSC
T ss_pred cCH-----HHHHHHHHHHHHHHHHH
Confidence 566 78888999999888876
No 46
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.69 E-value=3.7e-18 Score=180.69 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=129.8
Q ss_pred ccccchHHHHHHHHHHHHHhhh------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~------~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~ 386 (828)
++++|++.+++.+.+.+..... .....+.++||+||||||||++|+++|+.++.+++.++++...+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~-------- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE-------- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT--------
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH--------
Confidence 4688999998888877653110 01133456899999999999999999999999988887766433
Q ss_pred ccccccCcchHHHHHHhcC-CCCcEEEEecccccCCCCCC-----------ChHHHHHHhcCcccccccccccCCeeecC
Q 003349 387 RTYIGSMPGRLIDGLKRVG-VCNPVMLLDEIDKTGSDVRG-----------DPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 387 ~~~vg~~~g~l~~~~~~~~-~~~~vl~iDEid~l~~~~~~-----------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.+.|.....+...|..+. ..+.|+||||+|.+...... ..++.|+..++.. ....
T Consensus 83 -~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~------------~~~~ 149 (268)
T 2r62_A 83 -MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF------------GSEN 149 (268)
T ss_dssp -SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS------------SCSC
T ss_pred -hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc------------ccCC
Confidence 233333322223333222 12469999999999765311 1134444444421 1123
Q ss_pred CCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 455 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 455 ~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
.+++||+|||.++.+++++++ ||+ .+.|+.|+.+++.+|++.++.. ..+. ++..+..++....+..
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~-----~~~~------~~~~~~~la~~~~g~~ 218 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG-----VKLA------NDVNLQEVAKLTAGLA 218 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS-----SCCC------SSCCTTTTTSSSCSSC
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc-----CCCC------CccCHHHHHHHcCCCC
Confidence 458999999999999999999 897 6999999999999999887531 1111 1111333444333444
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAAVKV 551 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~~~~ 551 (828)
| +.|.++|+.|+..+
T Consensus 219 g-----~dl~~l~~~a~~~a 233 (268)
T 2r62_A 219 G-----ADLANIINEAALLA 233 (268)
T ss_dssp H-----HHHHHHHHHHHHTT
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 4 56667777666543
No 47
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.68 E-value=3.8e-16 Score=170.50 Aligned_cols=203 Identities=22% Similarity=0.290 Sum_probs=139.3
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhc
Q 003349 304 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIR 383 (828)
Q Consensus 304 l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~ 383 (828)
+..+...+...++|++++++.+...+.. +.++||+||||||||++|+++|+.++.++..++++......++.
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~--------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGICT--------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHH--------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHHc--------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 3455666778899999999988776653 34799999999999999999999999999999987555555554
Q ss_pred cCcccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec-CCCcEEEEe
Q 003349 384 GHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD-LSKVIFVAT 462 (828)
Q Consensus 384 g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~-~~~viiI~T 462 (828)
|... .+...+.. .+........|+||||++.+.++. ++.|++.|++..... .+.... ..++++|+|
T Consensus 90 g~~~--~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~~~~----~~~Ll~~l~~~~~~~-----~g~~~~~~~~~~viat 156 (331)
T 2r44_A 90 GTMI--YNQHKGNF--EVKKGPVFSNFILADEVNRSPAKV----QSALLECMQEKQVTI-----GDTTYPLDNPFLVLAT 156 (331)
T ss_dssp EEEE--EETTTTEE--EEEECTTCSSEEEEETGGGSCHHH----HHHHHHHHHHSEEEE-----TTEEEECCSSCEEEEE
T ss_pred Ccee--ecCCCCce--EeccCcccccEEEEEccccCCHHH----HHHHHHHHhcCceee-----CCEEEECCCCEEEEEe
Confidence 4321 01000110 011111124699999999988765 899999998653222 122222 235788899
Q ss_pred cCCCC-----CCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHH------------HHhcCCCCcccccCHHHHHHHH
Q 003349 463 ANRAQ-----PIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRV------------LDQHGLGSEFLQIPEAMVKLVI 524 (828)
Q Consensus 463 tN~~~-----~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~------------~~~~~~~~~~~~i~~~~l~~l~ 524 (828)
+|+.+ .++++|++||. .+.+++|+.+++.+|++.++.... +....-...++.++++++++++
T Consensus 157 ~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~ 236 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYII 236 (331)
T ss_dssp ECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred cCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 99654 48999999998 599999999999999988753100 0000000125678999999988
Q ss_pred HHh
Q 003349 525 QRY 527 (828)
Q Consensus 525 ~~~ 527 (828)
+.+
T Consensus 237 ~~~ 239 (331)
T 2r44_A 237 ELV 239 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 733
No 48
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.67 E-value=3.5e-16 Score=166.51 Aligned_cols=204 Identities=25% Similarity=0.316 Sum_probs=134.6
Q ss_pred cccccchHHHHHHHHHHHHHhhh------CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccC
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKL------KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGH 385 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~------~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~ 385 (828)
.++++|++++++.+.+....... ..-..+.+++|+|||||||||++++++..++..++.+++..+..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~------- 111 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE------- 111 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH-------
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH-------
Confidence 35688999998888776643211 11123345999999999999999999999988887776543211
Q ss_pred cccccccCcchHHHHHHhcC-CCCcEEEEecccccCCCCCC-----C-----hHHHHHHhcCcccccccccccCCeeecC
Q 003349 386 RRTYIGSMPGRLIDGLKRVG-VCNPVMLLDEIDKTGSDVRG-----D-----PASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 386 ~~~~vg~~~g~l~~~~~~~~-~~~~vl~iDEid~l~~~~~~-----~-----~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
.+.+.....+...|..+. ..+.++|+||+|.+...... + ..+.++..|+..+. .
T Consensus 112 --~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-------------~ 176 (278)
T 1iy2_A 112 --MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-------------D 176 (278)
T ss_dssp --STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-------------T
T ss_pred --HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-------------C
Confidence 122322334445555543 23459999999987654321 0 12344444543211 2
Q ss_pred CCcEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHH-HHHHHHHHhhhh
Q 003349 455 SKVIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA-MVKLVIQRYTRE 530 (828)
Q Consensus 455 ~~viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~-~l~~l~~~~~~~ 530 (828)
..+++++++|.++.+++++++ ||+ .++|+.|+.++|.+|++.++. . ..++++ .+..++..+.+.
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~-----~-------~~~~~~~~~~~la~~~~G~ 244 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR-----G-------KPLAEDVDLALLAKRTPGF 244 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT-----T-------SCBCTTCCHHHHHHTCTTC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc-----c-------CCCCcccCHHHHHHHcCCC
Confidence 346889999999999999998 887 799999999999999987642 1 233333 256677666665
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHH
Q 003349 531 AGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 531 ~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
.| +.|.++|+.|+..+.++
T Consensus 245 ~~-----~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 245 VG-----ADLENLLNEAALLAARE 263 (278)
T ss_dssp CH-----HHHHHHHHHHHHHHHHT
T ss_pred CH-----HHHHHHHHHHHHHHHHh
Confidence 55 66777777777665544
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.67 E-value=6e-16 Score=171.36 Aligned_cols=206 Identities=19% Similarity=0.257 Sum_probs=131.5
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC--CeEEEecCCcCchh----hh---
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR--KFIRISLGGVKDEA----DI--- 382 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~--~~~~i~~~~~~~~~----~l--- 382 (828)
.++++|++.+++.+......... ...++.++||+||||||||++|+++|+.++. ++..+++....... ..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~-~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIRE-GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHT-TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHH
Confidence 35689999998886655443322 2234578999999999999999999999975 66666654421100 00
Q ss_pred ---------------------------------ccCcccccccCcchHHHHHHhcC----------CCCcEEEEeccccc
Q 003349 383 ---------------------------------RGHRRTYIGSMPGRLIDGLKRVG----------VCNPVMLLDEIDKT 419 (828)
Q Consensus 383 ---------------------------------~g~~~~~vg~~~g~l~~~~~~~~----------~~~~vl~iDEid~l 419 (828)
.+...++.|.....+...+..+. ..++|+||||+|.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 00001112222233333332211 11359999999999
Q ss_pred CCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEec-----------CCCCCCCccccCceEEEEcCCCCHH
Q 003349 420 GSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA-----------NRAQPIPPPLLDRMEVIELPGYTPE 488 (828)
Q Consensus 420 ~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt-----------N~~~~l~~aLl~R~~~i~~~~~~~e 488 (828)
.+.. ++.|++.++... ..+++++|. |.+..++++|++||.++.|++|+.+
T Consensus 202 ~~~~----~~~L~~~le~~~---------------~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~ 262 (368)
T 3uk6_A 202 DIES----FSFLNRALESDM---------------APVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEK 262 (368)
T ss_dssp BHHH----HHHHHHHTTCTT---------------CCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHH
T ss_pred ChHH----HHHHHHHhhCcC---------------CCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHH
Confidence 8765 888999887431 123333433 3567899999999999999999999
Q ss_pred HHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH
Q 003349 489 EKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVA 552 (828)
Q Consensus 489 e~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l 552 (828)
++.+|++..+.. .+..++++++..+++...+ .++|.+. ++|+.|+..+.
T Consensus 263 e~~~il~~~~~~----------~~~~~~~~~l~~l~~~~~~-G~~r~~~----~ll~~a~~~A~ 311 (368)
T 3uk6_A 263 DTKQILRIRCEE----------EDVEMSEDAYTVLTRIGLE-TSLRYAI----QLITAASLVCR 311 (368)
T ss_dssp HHHHHHHHHHHH----------TTCCBCHHHHHHHHHHHHH-SCHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------cCCCCCHHHHHHHHHHhcC-CCHHHHH----HHHHHHHHHHH
Confidence 999999887531 2357899999998885542 3445444 44444444443
No 50
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.66 E-value=1.6e-15 Score=164.90 Aligned_cols=199 Identities=25% Similarity=0.318 Sum_probs=142.7
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccccccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGS 392 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~ 392 (828)
++++|++.+++.+...+....... ....+++|+||||||||++|+++++.++.++..++++.....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~------------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP------------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH-------------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh-------------
Confidence 468899999999988776543211 234579999999999999999999999999988887764332
Q ss_pred CcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCccccccccccc---CCeeecCCCcEEEEecCCCCCC
Q 003349 393 MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHY---LNVPFDLSKVIFVATANRAQPI 469 (828)
Q Consensus 393 ~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~---~~~~~~~~~viiI~TtN~~~~l 469 (828)
+.+...+......+.++||||++.+.... ++.|+.+++........+.. ........++++|+|||....+
T Consensus 78 --~~l~~~l~~~~~~~~~l~lDEi~~l~~~~----~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~ 151 (324)
T 1hqc_A 78 --GDLAAILANSLEEGDILFIDEIHRLSRQA----EEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI 151 (324)
T ss_dssp --HHHHHHHTTTCCTTCEEEETTTTSCCHHH----HHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSC
T ss_pred --HHHHHHHHHhccCCCEEEEECCcccccch----HHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccC
Confidence 23344444422345699999999998655 78888888754322111110 1122334578999999999999
Q ss_pred CccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 003349 470 PPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAAL 543 (828)
Q Consensus 470 ~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l 543 (828)
+++|++||. ++.|++|+.+++.+++..++. . .+..++++++..++..+. ...|.+.+.+..+
T Consensus 152 ~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~-----~-----~~~~~~~~~~~~l~~~~~--G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 152 TAPLLSRFGIVEHLEYYTPEELAQGVMRDAR-----L-----LGVRITEEAALEIGRRSR--GTMRVAKRLFRRV 214 (324)
T ss_dssp SCSTTTTCSCEEECCCCCHHHHHHHHHHHHH-----T-----TTCCCCHHHHHHHHHHSC--SCHHHHHHHHHHH
T ss_pred CHHHHhcccEEEecCCCCHHHHHHHHHHHHH-----h-----cCCCCCHHHHHHHHHHcc--CCHHHHHHHHHHH
Confidence 999999995 899999999999988887642 1 235789999999888653 3445555444443
No 51
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.66 E-value=5.4e-16 Score=175.34 Aligned_cols=184 Identities=18% Similarity=0.301 Sum_probs=129.2
Q ss_pred ccccchHHHH---HHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccc
Q 003349 313 SDHYGLVRVK---QRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTY 389 (828)
Q Consensus 313 ~~i~G~~~~~---~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~ 389 (828)
.+++||+.++ ..+...+... ..++++|+||||||||++|+++++.++.++..+++.... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~-~---------- 88 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG-V---------- 88 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC-H----------
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC-H----------
Confidence 4689999998 6666666533 226799999999999999999999999999988865421 1
Q ss_pred cccCcchHHHHHHhc-----CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEec-
Q 003349 390 IGSMPGRLIDGLKRV-----GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA- 463 (828)
Q Consensus 390 vg~~~g~l~~~~~~~-----~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt- 463 (828)
..+...+..+ .....++||||||.+.... ++.|+..|+.. .+++|++|
T Consensus 89 -----~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~----q~~LL~~le~~-----------------~v~lI~att 142 (447)
T 3pvs_A 89 -----KEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ----QDAFLPHIEDG-----------------TITFIGATT 142 (447)
T ss_dssp -----HHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------CCHHHHHTT-----------------SCEEEEEES
T ss_pred -----HHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH----HHHHHHHHhcC-----------------ceEEEecCC
Confidence 1112222111 1235699999999998766 78888888742 24566555
Q ss_pred -CCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHH
Q 003349 464 -NRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAA 542 (828)
Q Consensus 464 -N~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~ 542 (828)
|....++++|++||.++.|++|+.+++..+++..+.. ...++....+.+++++++.++..+. ..+|.+.+.++.
T Consensus 143 ~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~---~~~~~~~~~~~i~~~al~~L~~~~~--Gd~R~lln~Le~ 217 (447)
T 3pvs_A 143 ENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED---KTRGYGGQDIVLPDETRRAIAELVN--GDARRALNTLEM 217 (447)
T ss_dssp SCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC---TTTSSTTSSEECCHHHHHHHHHHHC--SCHHHHHHHHHH
T ss_pred CCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH---HhhhhccccCcCCHHHHHHHHHHCC--CCHHHHHHHHHH
Confidence 5556899999999999999999999999999887631 1122333567899999999998743 456766666665
Q ss_pred HH
Q 003349 543 LA 544 (828)
Q Consensus 543 l~ 544 (828)
++
T Consensus 218 a~ 219 (447)
T 3pvs_A 218 MA 219 (447)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 52
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.63 E-value=1.2e-15 Score=164.31 Aligned_cols=213 Identities=18% Similarity=0.283 Sum_probs=144.2
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCc---hhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKD---EADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~---~~~l~g~~ 386 (828)
.+++|++...+.+.+.+.... ..+.++||+||||||||++|+++++.. +.+++.++|+.... .+.+.|+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~ 77 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHE 77 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCC
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCcc
Confidence 457899888888888776542 234579999999999999999999976 46789999987643 23445543
Q ss_pred cc-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 387 RT-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 387 ~~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
++ +.|.... ....|..+. ++++|||||+.+.... +..|+++|+.... .......+ ...++.||+|||.
T Consensus 78 ~g~~tg~~~~-~~g~~~~a~--~g~L~LDEi~~l~~~~----q~~Ll~~l~~~~~---~~~g~~~~-~~~~~riI~atn~ 146 (304)
T 1ojl_A 78 KGAFTGADKR-REGRFVEAD--GGTLFLDEIGDISPLM----QVRLLRAIQEREV---QRVGSNQT-ISVDVRLIAATHR 146 (304)
T ss_dssp SSCCC---CC-CCCHHHHHT--TSEEEEESCTTCCHHH----HHHHHHHHHSSBC---CBTTBCCC-CBCCCEEEEEESS
T ss_pred ccccCchhhh-hcCHHHhcC--CCEEEEeccccCCHHH----HHHHHHHHhcCEe---eecCCccc-ccCCeEEEEecCc
Confidence 22 2222211 112233332 4699999999998765 8899999986432 11111111 1346789999998
Q ss_pred C-------CCCCccccCceE--EEEcCCCC--HHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchH
Q 003349 466 A-------QPIPPPLLDRME--VIELPGYT--PEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 534 (828)
Q Consensus 466 ~-------~~l~~aLl~R~~--~i~~~~~~--~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R 534 (828)
. ..++++|.+||. .|.+|++. .++...++..++. +.....+. ....++++++..+.. |++..++|
T Consensus 147 ~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~-~~~~~~~~--~~~~~s~~a~~~L~~-~~wpGnvR 222 (304)
T 1ojl_A 147 DLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLR-RFAERNRK--VVKGFTPQAMDLLIH-YDWPGNIR 222 (304)
T ss_dssp CHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHH-HHHHHTTC--CCCCBCHHHHHHHHH-CCCSSHHH
T ss_pred cHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHH-HHHHHhcc--CccCCCHHHHHHHHc-CCCCCCHH
Confidence 6 368899999995 47888888 4677777776653 33333332 245789999998776 56667788
Q ss_pred HHHHHHHHHH
Q 003349 535 NLERNLAALA 544 (828)
Q Consensus 535 ~l~~~i~~l~ 544 (828)
.|++.++.++
T Consensus 223 eL~~~l~~~~ 232 (304)
T 1ojl_A 223 ELENAIERAV 232 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777765
No 53
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.63 E-value=1.5e-15 Score=160.35 Aligned_cols=214 Identities=18% Similarity=0.253 Sum_probs=138.0
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCc---hhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~---~~~l~g~~ 386 (828)
++++|++..++.+.+.+..... .+.+++|+||||||||++|+++++.+. .+++.++|+.... .+.+.|..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~ 81 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE 81 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCc
Confidence 3577999888888877765432 345799999999999999999999875 5789999887643 22333332
Q ss_pred c-cccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC
Q 003349 387 R-TYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR 465 (828)
Q Consensus 387 ~-~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~ 465 (828)
. .|.|.... ....+..+. ++++||||++.+.++. +..|+++|+.... .... +......++.+|+|||.
T Consensus 82 ~~~~~g~~~~-~~~~l~~a~--~~~l~lDEi~~l~~~~----q~~Ll~~l~~~~~---~~~g-~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 82 AGAFTGAQKR-HPGRFERAD--GGTLFLDELATAPMMV----QEKLLRVIEYGEL---ERVG-GSQPLQVNVRLVCATNA 150 (265)
T ss_dssp ---------C-CCCHHHHTT--TSEEEEESGGGSCHHH----HHHHHHHHHHCEE---CCCC-C--CEECCCEEEEEESS
T ss_pred cccccccccc-ccchhhhcC--CcEEEEechHhcCHHH----HHHHHHHHHhCCe---ecCC-CcccccCCeEEEEecCc
Confidence 1 12222110 011222332 4699999999998765 8899999985432 1111 11112346789999998
Q ss_pred C-------CCCCccccCceE--EEEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchH
Q 003349 466 A-------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 534 (828)
Q Consensus 466 ~-------~~l~~aLl~R~~--~i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R 534 (828)
. ..++++|.+||. .|.+|++.. ++...+++.++.. .....+.. ....++++++..+.. |.+..++|
T Consensus 151 ~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~-~~~~~~~~-~~~~~~~~a~~~L~~-~~~~gn~r 227 (265)
T 2bjv_A 151 DLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQ-MCREIKLP-LFPGFTERARETLLN-YRWPGNIR 227 (265)
T ss_dssp CHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHH-HHHHTTCS-SCCCBCHHHHHHHHH-SCCTTHHH
T ss_pred CHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHH-HHHHhCCC-cccCcCHHHHHHHHh-CCCCCCHH
Confidence 5 368899999995 588888876 6677777666533 22333321 113689999998876 55566788
Q ss_pred HHHHHHHHHH
Q 003349 535 NLERNLAALA 544 (828)
Q Consensus 535 ~l~~~i~~l~ 544 (828)
.|++.++.++
T Consensus 228 eL~~~l~~~~ 237 (265)
T 2bjv_A 228 ELKNVVERSV 237 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 54
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.63 E-value=7.6e-16 Score=167.55 Aligned_cols=186 Identities=19% Similarity=0.257 Sum_probs=132.9
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccccccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGS 392 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~ 392 (828)
++++|++.+++.+..++... ..+..+|++||||||||++++++|+.++.+++.++++... ...+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i~--------- 90 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFVR--------- 90 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHHH---------
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHHH---------
Confidence 46889999999998887622 2345678889999999999999999999888888866532 11111
Q ss_pred CcchHHHHHHhcCC--CCcEEEEecccccC-CCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCC
Q 003349 393 MPGRLIDGLKRVGV--CNPVMLLDEIDKTG-SDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPI 469 (828)
Q Consensus 393 ~~g~l~~~~~~~~~--~~~vl~iDEid~l~-~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l 469 (828)
..+.......+. ...++||||+|.+. ... ++.|+..++.. ..++.||+|||.+..+
T Consensus 91 --~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~----~~~L~~~le~~---------------~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 91 --GPLTNFASAASFDGRQKVIVIDEFDRSGLAES----QRHLRSFMEAY---------------SSNCSIIITANNIDGI 149 (324)
T ss_dssp --THHHHHHHBCCCSSCEEEEEEESCCCGGGHHH----HHHHHHHHHHH---------------GGGCEEEEEESSGGGS
T ss_pred --HHHHHHHhhcccCCCCeEEEEECCcccCcHHH----HHHHHHHHHhC---------------CCCcEEEEEeCCcccc
Confidence 112222222111 24599999999997 554 78899888742 1356899999999999
Q ss_pred CccccCceEEEEcCCCCHHHHHHHHHHhhcH--HHHHhcCCCCcccccCH-HHHHHHHHHhhhhhchHHHHHHHH
Q 003349 470 PPPLLDRMEVIELPGYTPEEKLRIAMRHLIP--RVLDQHGLGSEFLQIPE-AMVKLVIQRYTREAGVRNLERNLA 541 (828)
Q Consensus 470 ~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~--~~~~~~~~~~~~~~i~~-~~l~~l~~~~~~~~g~R~l~~~i~ 541 (828)
++++++||.++.|++|+.+++.+|+...+.. ..... .++.+++ ++++.++..+. ..+|.+...++
T Consensus 150 ~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~-----~~~~~~~~~~~~~l~~~~~--gd~R~a~~~L~ 217 (324)
T 3u61_B 150 IKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKH-----EGIAIADMKVVAALVKKNF--PDFRKTIGELD 217 (324)
T ss_dssp CTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHH-----HTCCBSCHHHHHHHHHHTC--SCTTHHHHHHH
T ss_pred CHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHH-----cCCCCCcHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 9999999999999999999998887665432 22222 2467887 99999988654 34555444433
No 55
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.4e-15 Score=159.32 Aligned_cols=212 Identities=13% Similarity=0.044 Sum_probs=136.2
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC----------CCeEEEecCCcCchh----
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----------RKFIRISLGGVKDEA---- 380 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~----------~~~~~i~~~~~~~~~---- 380 (828)
+.|.++..+.+..++..... ...+++++|+||||||||++++.+++.+. ..++.++|....+..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 45777777888777765544 24677899999999999999999999983 245667776655543
Q ss_pred ----hhccCcccccccCcchHHHHHHhc---CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec
Q 003349 381 ----DIRGHRRTYIGSMPGRLIDGLKRV---GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 381 ----~l~g~~~~~vg~~~g~l~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
.+.|.... .|.....+...|... .....|++|||+|.+. . ++.|+.+++-.. .+
T Consensus 100 ~I~~~L~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~----q~~L~~l~~~~~------------~~ 160 (318)
T 3te6_A 100 KIWFAISKENLC-GDISLEALNFYITNVPKAKKRKTLILIQNPENLL--S----EKILQYFEKWIS------------SK 160 (318)
T ss_dssp HHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--C----THHHHHHHHHHH------------CS
T ss_pred HHHHHhcCCCCC-chHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--c----chHHHHHHhccc------------cc
Confidence 22333211 122333455566543 2234599999999998 2 577777775211 12
Q ss_pred CCCcEEEEecCCCCC----CCccccCce--EEEEcCCCCHHHHHHHHHHhhcHHHHHhc---------------------
Q 003349 454 LSKVIFVATANRAQP----IPPPLLDRM--EVIELPGYTPEEKLRIAMRHLIPRVLDQH--------------------- 506 (828)
Q Consensus 454 ~~~viiI~TtN~~~~----l~~aLl~R~--~~i~~~~~~~ee~~~Il~~~l~~~~~~~~--------------------- 506 (828)
.+++++|+++|..+. +++++++|| .+|.|++|+.+++.+|++..+........
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 240 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQ 240 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC------
T ss_pred CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 456899999998863 556677898 47999999999999999998743110000
Q ss_pred ----CCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q 003349 507 ----GLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVK 550 (828)
Q Consensus 507 ----~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~ 550 (828)
++.+..+.+++++++.+++......| ++++.| .+|+.|..-
T Consensus 241 ~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G--D~R~Al-~ilr~A~~~ 285 (318)
T 3te6_A 241 KIPDNVIVINHKINNKITQLIAKNVANVSG--STEKAF-KICEAAVEI 285 (318)
T ss_dssp --CTTEEEECEECCHHHHHHHHHHHHHHHC--SHHHHH-HHHHHHHHH
T ss_pred cccccccccccccCHHHHHHHHHHHHhhCC--hHHHHH-HHHHHHHHH
Confidence 11112346899999999985444334 222333 445554443
No 56
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.61 E-value=1.6e-15 Score=160.78 Aligned_cols=193 Identities=18% Similarity=0.174 Sum_probs=124.0
Q ss_pred ccccchHHHHHHHHHH----HHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccc
Q 003349 313 SDHYGLVRVKQRIIEY----LAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRT 388 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~----l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~ 388 (828)
..++|++...+.+... .............++||+||||||||++|+++|+.++.+++.++++. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~------------~ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD------------K 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG------------G
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH------------H
Confidence 4466666665555542 22111112345568999999999999999999999999999887654 1
Q ss_pred ccccCc----chHHHHHHhcC-CCCcEEEEecccccCCCCCC------ChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 389 YIGSMP----GRLIDGLKRVG-VCNPVMLLDEIDKTGSDVRG------DPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 389 ~vg~~~----g~l~~~~~~~~-~~~~vl~iDEid~l~~~~~~------~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
+.|... +.+...+..+. ....++||||+|.+...... ..++.|...++... ....++
T Consensus 101 ~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~------------~~~~~~ 168 (272)
T 1d2n_A 101 MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP------------PQGRKL 168 (272)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC------------STTCEE
T ss_pred hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc------------CCCCCE
Confidence 233222 23445555432 23569999999998543211 11344444444210 112457
Q ss_pred EEEEecCCCCCCCc-cccCceE-EEEcCCCCH-HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh---hh
Q 003349 458 IFVATANRAQPIPP-PLLDRME-VIELPGYTP-EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR---EA 531 (828)
Q Consensus 458 iiI~TtN~~~~l~~-aLl~R~~-~i~~~~~~~-ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~---~~ 531 (828)
++|+|||.++.+++ .+++||. .|.+|+++. ++...++... ..++++.+..++....+ ..
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~---------------~~~~~~~~~~l~~~~~g~~~~g 233 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL---------------GNFKDKERTTIAQQVKGKKVWI 233 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH---------------TCSCHHHHHHHHHHHTTSEEEE
T ss_pred EEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc---------------CCCCHHHHHHHHHHhcCCCccc
Confidence 89999999988887 7889985 789999887 5555555432 24678888888875443 44
Q ss_pred chHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALA 544 (828)
Q Consensus 532 g~R~l~~~i~~l~ 544 (828)
++|.+...++...
T Consensus 234 ~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 234 GIKKLLMLIEMSL 246 (272)
T ss_dssp CHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHh
Confidence 6777776666554
No 57
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.60 E-value=1.6e-14 Score=164.59 Aligned_cols=65 Identities=29% Similarity=0.375 Sum_probs=51.8
Q ss_pred hcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC--CCeEEEecCCc
Q 003349 311 LDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG--RKFIRISLGGV 376 (828)
Q Consensus 311 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~--~~~~~i~~~~~ 376 (828)
..++++|++++++.+..++..... ...++.++||+||||||||++|+++|+.++ .+++.++++..
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKS-KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHT-TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred chhhccCHHHHHHHHHHHHHHHHh-CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 346799999999998877654332 334567899999999999999999999998 77777776543
No 58
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.59 E-value=2.4e-15 Score=171.48 Aligned_cols=203 Identities=16% Similarity=0.178 Sum_probs=129.6
Q ss_pred cHHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC--CeEEEecCCcCchh
Q 003349 303 DLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR--KFIRISLGGVKDEA 380 (828)
Q Consensus 303 ~l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~--~~~~i~~~~~~~~~ 380 (828)
.+..+...+...++|++++++.+...+. .+.++||+||||||||++|+++|+.++. ++..+.+.. ..++
T Consensus 12 ~~~~l~~~l~~~ivGq~~~i~~l~~al~--------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~ 82 (500)
T 3nbx_X 12 RISRLSSSLEKGLYERSHAIRLCLLAAL--------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPE 82 (500)
T ss_dssp HHHHHHHHHHTTCSSCHHHHHHHHHHHH--------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHh--------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHH
Confidence 4566777888999999999988876654 2357999999999999999999998854 344444432 3456
Q ss_pred hhccCcccccccCcchHHHHHHhcCC----CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 381 DIRGHRRTYIGSMPGRLIDGLKRVGV----CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 381 ~l~g~~~~~vg~~~g~l~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
++.|....+..... ..+..... .++|+|||||+++.++. ++.|+++|+++.... .|.......
T Consensus 83 dL~G~~~~~~~~~~----g~~~~~~~g~l~~~~IL~IDEI~r~~~~~----q~~LL~~lee~~v~i-----~G~~~~~~~ 149 (500)
T 3nbx_X 83 EVFGPLSIQALKDE----GRYERLTSGYLPEAEIVFLDEIWKAGPAI----LNTLLTAINERQFRN-----GAHVEKIPM 149 (500)
T ss_dssp HHHCCBC--------------CBCCTTSGGGCSEEEEESGGGCCHHH----HHHHHHHHHSSEEEC-----SSSEEECCC
T ss_pred HhcCcccHHHHhhc----hhHHhhhccCCCcceeeeHHhHhhhcHHH----HHHHHHHHHHHhccC-----CCCcCCcch
Confidence 66653211100001 11211110 24589999999988776 899999998654322 133333444
Q ss_pred cEEEEecCCCC---CCCccccCceE-EEEcCCCCH-HHHHHHHHHhhcH-------------HHHHhcCCCCcccccCHH
Q 003349 457 VIFVATANRAQ---PIPPPLLDRME-VIELPGYTP-EEKLRIAMRHLIP-------------RVLDQHGLGSEFLQIPEA 518 (828)
Q Consensus 457 viiI~TtN~~~---~l~~aLl~R~~-~i~~~~~~~-ee~~~Il~~~l~~-------------~~~~~~~~~~~~~~i~~~ 518 (828)
.++|+|||+.. .+.+++++||. .+.+++|+. +++..|++.+... ..+....-....+.++++
T Consensus 150 ~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~ 229 (500)
T 3nbx_X 150 RLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH 229 (500)
T ss_dssp CEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH
T ss_pred hhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH
Confidence 45677888643 35569999997 599999987 6788888765310 000000000124678999
Q ss_pred HHHHHHHHh
Q 003349 519 MVKLVIQRY 527 (828)
Q Consensus 519 ~l~~l~~~~ 527 (828)
+++++++.+
T Consensus 230 v~e~i~~l~ 238 (500)
T 3nbx_X 230 VFELIFMLR 238 (500)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 59
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.59 E-value=2.4e-14 Score=145.69 Aligned_cols=184 Identities=23% Similarity=0.301 Sum_probs=128.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh-----CCCeEEEecCCcCchhhhccCcc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGGVKDEADIRGHRR 387 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l-----~~~~~~i~~~~~~~~~~l~g~~~ 387 (828)
.+++|++.+++.+..++... ..++++|+||||||||++++++++.+ ...+..++++.......+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 86 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR---- 86 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH----
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH----
Confidence 45889999999998877532 23459999999999999999999886 2345666654432211110
Q ss_pred cccccCcchHHHHHHhc---CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC
Q 003349 388 TYIGSMPGRLIDGLKRV---GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN 464 (828)
Q Consensus 388 ~~vg~~~g~l~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN 464 (828)
..+....... .....+++|||++.+.+.. ++.|++.++.. ..++.+|+|+|
T Consensus 87 -------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~----~~~l~~~l~~~---------------~~~~~~i~~~~ 140 (226)
T 2chg_A 87 -------HKIKEFARTAPIGGAPFKIIFLDEADALTADA----QAALRRTMEMY---------------SKSCRFILSCN 140 (226)
T ss_dssp -------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHH----HHHHHHHHHHT---------------TTTEEEEEEES
T ss_pred -------HHHHHHhcccCCCccCceEEEEeChhhcCHHH----HHHHHHHHHhc---------------CCCCeEEEEeC
Confidence 1111121111 1234599999999997654 77888887642 23568899999
Q ss_pred CCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 465 RAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 465 ~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
.+..+++++.+||..+.|++++.++..+++...+. .. +..++++++..++..+. ...|.+.+.++.++
T Consensus 141 ~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~~~~l~~~~~--g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 141 YVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE-----KE-----GVKITEDGLEALIYISG--GDFRKAINALQGAA 208 (226)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH-----HH-----TCCBCHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred ChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 99999999999999999999999999999887642 11 24688999999887553 34555555554443
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.58 E-value=1e-14 Score=166.44 Aligned_cols=189 Identities=20% Similarity=0.288 Sum_probs=125.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchhhh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 382 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~~l 382 (828)
+.++|++..++++...+.. ....++||+||||||||++|+++|+.+ +.+++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhc------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 4689999999999887753 244678999999999999999999987 5566666655
Q ss_pred ccCcccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEE
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA 461 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~ 461 (828)
..|.|.....+...+..... .+.|+||| ... +.++.|+..|+. .++.+|+
T Consensus 246 ----~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~----~a~~~L~~~L~~-----------------g~v~vI~ 296 (468)
T 3pxg_A 246 ----TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAI----DASNILKPSLAR-----------------GELQCIG 296 (468)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC----C------------CCCTTS-----------------SSCEEEE
T ss_pred ----ccccchHHHHHHHHHHHHHhcCCeEEEEe----Cch----hHHHHHHHhhcC-----------------CCEEEEe
Confidence 14566655556555554432 24599999 111 225667666652 2568999
Q ss_pred ecCCCC-----CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHH
Q 003349 462 TANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNL 536 (828)
Q Consensus 462 TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l 536 (828)
+||... .++++|++||..|.|++|+.+++..|++..+.. +.. ..++.++++++.+++....++.+.|.+
T Consensus 297 at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~-~~~-----~~~~~i~~~al~~l~~~s~~~~~~~~l 370 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR-YEA-----HHRVSITDDAIEAAVKLSDRYISDRFL 370 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT-SGG-----GSSCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred cCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHH-HHH-----hcCCCCCHHHHHHHHHHHHHHhccCcC
Confidence 999987 799999999999999999999999999876421 111 234678999999988755554444444
Q ss_pred HHHHHHHHHHHHHH
Q 003349 537 ERNLAALARAAAVK 550 (828)
Q Consensus 537 ~~~i~~l~~~a~~~ 550 (828)
......++..|+.+
T Consensus 371 p~~ai~ll~~a~~~ 384 (468)
T 3pxg_A 371 PDKAIDLIDEAGSK 384 (468)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 44444555555443
No 61
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.58 E-value=2.8e-15 Score=181.65 Aligned_cols=205 Identities=23% Similarity=0.313 Sum_probs=148.2
Q ss_pred cccccchHHHHHHHHHHHHHhhhCC-------CCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhcc
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKP-------DARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~-------~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g 384 (828)
.++++|++.+++.+.+.+..+..++ -.++.++||+||||||||++|+++|+.++.+++.+++.....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~------ 276 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS------ 276 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS------
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh------
Confidence 4578999999999999887644332 246678999999999999999999999999998888655332
Q ss_pred CcccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCCC-------hHHHHHHhcCcccccccccccCCeeecCCC
Q 003349 385 HRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGD-------PASALLEVLDPEQNKTFNDHYLNVPFDLSK 456 (828)
Q Consensus 385 ~~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~~-------~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~ 456 (828)
.+.|.....+...|..+.. .+.++||||+|.+.+..... .++.|++.++.... ..+
T Consensus 277 ---~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-------------~~~ 340 (806)
T 1ypw_A 277 ---KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-------------RAH 340 (806)
T ss_dssp ---SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-------------TSC
T ss_pred ---hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-------------ccc
Confidence 3455555566666655432 24599999999998765321 24667777763211 246
Q ss_pred cEEEEecCCCCCCCccccC--ceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhch
Q 003349 457 VIFVATANRAQPIPPPLLD--RME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGV 533 (828)
Q Consensus 457 viiI~TtN~~~~l~~aLl~--R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~ 533 (828)
+++|+|||+++.+++++.+ ||+ .+.++.|+.+++.+|++.++.. ..+ ..+..+..++..+.+..|
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~-----~~l------~~~~~l~~la~~t~g~~g- 408 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-----MKL------ADDVDLEQVANETHGHVG- 408 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT-----SCC------CTTCCTHHHHHSCSSCCH-
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc-----CCC------cccchhHHHHHhhcCcch-
Confidence 7999999999999999998 996 7999999999999999877421 111 112224455665555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003349 534 RNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 534 R~l~~~i~~l~~~a~~~~l~~ 554 (828)
+.+..+|++++...+++
T Consensus 409 ----~dl~~l~~ea~~~a~r~ 425 (806)
T 1ypw_A 409 ----ADLAALCSEAALQAIRK 425 (806)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhh
Confidence 66778888888887766
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.56 E-value=2.5e-14 Score=157.05 Aligned_cols=210 Identities=16% Similarity=0.192 Sum_probs=123.9
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE----EEecCCcC-----------
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFI----RISLGGVK----------- 377 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~----~i~~~~~~----------- 377 (828)
++++|++.+++.+...+.. ....++||+||||||||++|+++++.++.... .++|....
T Consensus 24 ~~i~G~~~~~~~l~~~~~~------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVD------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLST 97 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHC------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCC
T ss_pred hhccChHHHHHHHHHHhhC------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhcc
Confidence 4588999887764333221 12335999999999999999999999863110 01222110
Q ss_pred ----------------chhhhccCcccccccCcchHHHHHHhcC----------CCCcEEEEecccccCCCCCCChHHHH
Q 003349 378 ----------------DEADIRGHRRTYIGSMPGRLIDGLKRVG----------VCNPVMLLDEIDKTGSDVRGDPASAL 431 (828)
Q Consensus 378 ----------------~~~~l~g~~~~~vg~~~g~l~~~~~~~~----------~~~~vl~iDEid~l~~~~~~~~~~~L 431 (828)
....+. |.. .+...+.... ..++++||||++.+.++. ++.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~-------g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~----~~~L 164 (350)
T 1g8p_A 98 NVIRKPTPVVDLPLGVSEDRVV-------GAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHI----VDLL 164 (350)
T ss_dssp CEEEECCCEEEECTTCCHHHHH-------CEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHH----HHHH
T ss_pred ccccCCCcccccCCCcchhhhe-------eec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHH----HHHH
Confidence 001111 110 0111111110 024699999999998766 8899
Q ss_pred HHhcCcccccccccccCCeeecCCCcEEEEecCCCC-CCCccccCceEE-EEcCCC-CHHHHHHHHHHhhcH--------
Q 003349 432 LEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-PIPPPLLDRMEV-IELPGY-TPEEKLRIAMRHLIP-------- 500 (828)
Q Consensus 432 l~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-~l~~aLl~R~~~-i~~~~~-~~ee~~~Il~~~l~~-------- 500 (828)
++.|+..... +.......+. ..++++|+|+|+.. .++++|++||.+ +.+++| +.+++.+|++..+..
T Consensus 165 l~~le~~~~~-~~~~g~~~~~-~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~ 242 (350)
T 1g8p_A 165 LDVAQSGENV-VERDGLSIRH-PARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFL 242 (350)
T ss_dssp HHHHHHSEEE-ECCTTCCEEE-ECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhcCceE-EEecceEEee-CCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhc
Confidence 9998854211 1111111222 23789999999855 899999999985 999999 566777888763210
Q ss_pred -----------HHHHhcCCCCcccccCHHHHHHHHHHhhhhh--chHHHHHHHHHH
Q 003349 501 -----------RVLDQHGLGSEFLQIPEAMVKLVIQRYTREA--GVRNLERNLAAL 543 (828)
Q Consensus 501 -----------~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~--g~R~l~~~i~~l 543 (828)
............+.++++++.++++.+.+.. +.|.+.+.+...
T Consensus 243 ~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a 298 (350)
T 1g8p_A 243 EEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSA 298 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 0000000011246899999999998655422 456655554443
No 63
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.54 E-value=2.9e-14 Score=154.10 Aligned_cols=183 Identities=22% Similarity=0.273 Sum_probs=127.6
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh-----CCCeEEEecCCcCchhhhccCcc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGGVKDEADIRGHRR 387 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l-----~~~~~~i~~~~~~~~~~l~g~~~ 387 (828)
.+++|++.+++.+...+.. ...++++|+||||||||++|+++++.+ +.++..++++.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI-------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--------
T ss_pred HHHhCCHHHHHHHHHHHhC------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--------
Confidence 3588999998888765532 233459999999999999999999986 224566665542211
Q ss_pred cccccCcchHHHHHHhcC---CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC
Q 003349 388 TYIGSMPGRLIDGLKRVG---VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN 464 (828)
Q Consensus 388 ~~vg~~~g~l~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN 464 (828)
......+.......+ ....+++|||+|.+.... ++.|+..++.. ..++.||+++|
T Consensus 83 ---~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~----~~~L~~~le~~---------------~~~~~~i~~~~ 140 (319)
T 2chq_A 83 ---DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA----QAALRRTMEMY---------------SKSCRFILSCN 140 (319)
T ss_dssp ---TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHH----HHTTGGGTSSS---------------SSSEEEEEEES
T ss_pred ---HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHH----HHHHHHHHHhc---------------CCCCeEEEEeC
Confidence 111112222221222 224599999999997654 67787777631 24578999999
Q ss_pred CCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 003349 465 RAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAAL 543 (828)
Q Consensus 465 ~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l 543 (828)
.+..+.+++.+||..+.|++++.+++.+++...+. ..++.++++++..++..+. .++|.+...++.+
T Consensus 141 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----------~~~~~i~~~~l~~l~~~~~--G~~r~~~~~l~~~ 207 (319)
T 2chq_A 141 YVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE----------KEGVKITEDGLEALIYISG--GDFRKAINALQGA 207 (319)
T ss_dssp CGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH----------TTCCCBCHHHHHHHHHTTT--TCHHHHHHHHHHH
T ss_pred ChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 99999999999999999999999999998887642 2346789999999986543 3455554444443
No 64
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=6.4e-14 Score=151.99 Aligned_cols=181 Identities=22% Similarity=0.289 Sum_probs=127.7
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCC-----CeEEEecCCcCchhhhccCcc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR-----KFIRISLGGVKDEADIRGHRR 387 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~-----~~~~i~~~~~~~~~~l~g~~~ 387 (828)
.+++|++.+++.+...+... ..++++|+||||||||++|+++++.+.. .+..++++......
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~------- 91 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN------- 91 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH-------
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchH-------
Confidence 45889999999998877642 3346999999999999999999998632 24555544321110
Q ss_pred cccccCcchHHHHHHhcC---CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC
Q 003349 388 TYIGSMPGRLIDGLKRVG---VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN 464 (828)
Q Consensus 388 ~~vg~~~g~l~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN 464 (828)
.....+.......+ ....+++|||+|.+.+.. ++.|+..++.. ..++.||+|+|
T Consensus 92 ----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~----~~~L~~~le~~---------------~~~~~~i~~~~ 148 (327)
T 1iqp_A 92 ----VIREKVKEFARTKPIGGASFKIIFLDEADALTQDA----QQALRRTMEMF---------------SSNVRFILSCN 148 (327)
T ss_dssp ----TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHH----HHHHHHHHHHT---------------TTTEEEEEEES
T ss_pred ----HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHH----HHHHHHHHHhc---------------CCCCeEEEEeC
Confidence 00111222222221 224599999999997655 88899888742 23568889999
Q ss_pred CCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHH
Q 003349 465 RAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLA 541 (828)
Q Consensus 465 ~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~ 541 (828)
.+..+.+++.+||..+.|++++.++..+++...+. ..++.++++++.+++..+.+ +.|.+.+.++
T Consensus 149 ~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~----------~~~~~~~~~~~~~l~~~~~g--~~r~~~~~l~ 213 (327)
T 1iqp_A 149 YSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE----------NEGLELTEEGLQAILYIAEG--DMRRAINILQ 213 (327)
T ss_dssp CGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH----------TTTCEECHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred CccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH----------hcCCCCCHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 99999999999999999999999999998877642 22467899999999876533 4454444443
No 65
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.52 E-value=2.4e-14 Score=155.67 Aligned_cols=170 Identities=16% Similarity=0.269 Sum_probs=117.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
.+.+++|+||||||||++|+++++.+ +.++..+++..... .+ .+.........|........++||||
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~vL~iDE 106 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ--AM-------VEHLKKGTINEFRNMYKSVDLLLLDD 106 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH--HH-------HHHHHHTCHHHHHHHHHTCSEEEEEC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH--HH-------HHHHHcCcHHHHHHHhcCCCEEEEcC
Confidence 45679999999999999999999988 78888888665321 11 11110011111211111256999999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC---CCCccccCce---EEEEcCCCCHHH
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRM---EVIELPGYTPEE 489 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~---~l~~aLl~R~---~~i~~~~~~~ee 489 (828)
++.+..+. ..+..++..++.... ....+|++|+|.+. .++++|++|| .++.|++ +.++
T Consensus 107 i~~l~~~~--~~~~~l~~~l~~~~~-------------~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e 170 (324)
T 1l8q_A 107 VQFLSGKE--RTQIEFFHIFNTLYL-------------LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKT 170 (324)
T ss_dssp GGGGTTCH--HHHHHHHHHHHHHHH-------------TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHH
T ss_pred cccccCCh--HHHHHHHHHHHHHHH-------------CCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHH
Confidence 99987632 125667777653211 12245666666655 6899999999 5799999 9999
Q ss_pred HHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 003349 490 KLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARA 546 (828)
Q Consensus 490 ~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~ 546 (828)
+.+|++.++. . .++.++++++++++..+ .++|.+...++.++..
T Consensus 171 ~~~il~~~~~-----~-----~~~~l~~~~l~~l~~~~---g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 171 RFKIIKEKLK-----E-----FNLELRKEVIDYLLENT---KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHHHHH-----H-----TTCCCCHHHHHHHHHHC---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----h-----cCCCCCHHHHHHHHHhC---CCHHHHHHHHHHHHHc
Confidence 9999988753 1 23578999999999876 5678888888888755
No 66
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.52 E-value=2.4e-13 Score=140.05 Aligned_cols=192 Identities=22% Similarity=0.207 Sum_probs=124.6
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe--cCCcCchhhhc-cCcccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS--LGGVKDEADIR-GHRRTY 389 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~--~~~~~~~~~l~-g~~~~~ 389 (828)
.+++|++.+++.+...+... ..+..++|+||||||||++++.+++.+........ +........+. +....+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-----CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 45889999999998877542 22347899999999999999999998754321110 00000000000 000000
Q ss_pred cc------cCcchHHHHHHhcC-----CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcE
Q 003349 390 IG------SMPGRLIDGLKRVG-----VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458 (828)
Q Consensus 390 vg------~~~g~l~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vi 458 (828)
.. .....+...+.... ..+.+++|||++.+.+.. ++.|+..++.. ..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~----~~~l~~~l~~~---------------~~~~~ 158 (250)
T 1njg_A 98 IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS----FNALLKTLEEP---------------PEHVK 158 (250)
T ss_dssp EEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHH----HHHHHHHHHSC---------------CTTEE
T ss_pred EEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHH----HHHHHHHHhcC---------------CCceE
Confidence 00 01122334444322 123499999999987554 77888887531 23578
Q ss_pred EEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHH
Q 003349 459 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLER 538 (828)
Q Consensus 459 iI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~ 538 (828)
+|+|||....+++++++|+..+.|++++.++..+++..++.. .+..++++++..+++.+.+ ..|.+..
T Consensus 159 ~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~----------~~~~~~~~~~~~l~~~~~G--~~~~~~~ 226 (250)
T 1njg_A 159 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----------EHIAHEPRALQLLARAAEG--SLRDALS 226 (250)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----------TTCCBCHHHHHHHHHHHTT--CHHHHHH
T ss_pred EEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh----------cCCCCCHHHHHHHHHHcCC--CHHHHHH
Confidence 999999999999999999999999999999999999877531 2357889999988886543 3444443
Q ss_pred HH
Q 003349 539 NL 540 (828)
Q Consensus 539 ~i 540 (828)
.+
T Consensus 227 ~~ 228 (250)
T 1njg_A 227 LT 228 (250)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 67
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=5.3e-14 Score=154.51 Aligned_cols=193 Identities=16% Similarity=0.191 Sum_probs=126.8
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC------CCeEEEecCCcCchhhhccCc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG------RKFIRISLGGVKDEADIRGHR 386 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~------~~~~~i~~~~~~~~~~l~g~~ 386 (828)
.+++|++++++.+...+.. ...++++|+||||||||++|+++++.++ ..+..++++.......+....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKS------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKV 110 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTC------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHH
T ss_pred HHhhCCHHHHHHHHHHHhc------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHH
Confidence 4688999998888776532 1224599999999999999999999864 245566655432221111000
Q ss_pred ccccccC-cchHHHHHHhcC-CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC
Q 003349 387 RTYIGSM-PGRLIDGLKRVG-VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN 464 (828)
Q Consensus 387 ~~~vg~~-~g~l~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN 464 (828)
..+.... .+.........+ ....|+||||++.+.+.. ++.|++.|+... .++.||+++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~----~~~Ll~~le~~~---------------~~~~~il~~~ 171 (353)
T 1sxj_D 111 KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA----QSALRRTMETYS---------------GVTRFCLICN 171 (353)
T ss_dssp HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH----HHHHHHHHHHTT---------------TTEEEEEEES
T ss_pred HHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHH----HHHHHHHHHhcC---------------CCceEEEEeC
Confidence 0000000 000000000111 123499999999998765 788999887531 2457888899
Q ss_pred CCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHH
Q 003349 465 RAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAA 542 (828)
Q Consensus 465 ~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~ 542 (828)
.+..+.+++++||..+.|++++.++...++...+. ..++.++++++.++++...+ .+|.+...++.
T Consensus 172 ~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~----------~~~~~i~~~~l~~l~~~~~G--~~r~~~~~l~~ 237 (353)
T 1sxj_D 172 YVTRIIDPLASQCSKFRFKALDASNAIDRLRFISE----------QENVKCDDGVLERILDISAG--DLRRGITLLQS 237 (353)
T ss_dssp CGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH----------TTTCCCCHHHHHHHHHHTSS--CHHHHHHHHHH
T ss_pred chhhCcchhhccCceEEeCCCCHHHHHHHHHHHHH----------HhCCCCCHHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 99999999999999999999999999998887642 23467899999999986543 34544444433
No 68
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.50 E-value=2.1e-14 Score=142.56 Aligned_cols=154 Identities=20% Similarity=0.291 Sum_probs=103.8
Q ss_pred hcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchh
Q 003349 311 LDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEA 380 (828)
Q Consensus 311 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~ 380 (828)
...+++|+++.++.+...+.. ..+.+++|+||||||||++++++++.+ +.++..+++......
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 92 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG- 92 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTT-
T ss_pred cccccccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhcc-
Confidence 345688999988888876642 345679999999999999999999987 455566654432110
Q ss_pred hhccCcccccccCcchHHHHHHhc--CCCCcEEEEecccccCCCC----CCChHHHHHHhcCcccccccccccCCeeecC
Q 003349 381 DIRGHRRTYIGSMPGRLIDGLKRV--GVCNPVMLLDEIDKTGSDV----RGDPASALLEVLDPEQNKTFNDHYLNVPFDL 454 (828)
Q Consensus 381 ~l~g~~~~~vg~~~g~l~~~~~~~--~~~~~vl~iDEid~l~~~~----~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 454 (828)
..+.|.....+...+... .....|++|||++.+.+.. ..+.++.|..+++.
T Consensus 93 ------~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~----------------- 149 (195)
T 1jbk_A 93 ------AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR----------------- 149 (195)
T ss_dssp ------TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-----------------
T ss_pred ------CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-----------------
Confidence 012222222333333321 1223489999999997433 12235566655531
Q ss_pred CCcEEEEecCCCC-----CCCccccCceEEEEcCCCCHHHHHHHH
Q 003349 455 SKVIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIA 494 (828)
Q Consensus 455 ~~viiI~TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~~~Il 494 (828)
.++.+|+|+|... .+++++++||..+.|++|+.+++.+|+
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 2467888888775 789999999999999999999988765
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.50 E-value=1.2e-13 Score=167.47 Aligned_cols=168 Identities=20% Similarity=0.324 Sum_probs=115.9
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchhhh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADI 382 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~~l 382 (828)
+.++|+++.++++.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 180 d~iiG~~~~i~~l~~~l~~------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhC------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 4689999999999887753 345679999999999999999999997 556666555
Q ss_pred ccCcccccccCcchHHHHHHhcCC-CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEE
Q 003349 383 RGHRRTYIGSMPGRLIDGLKRVGV-CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVA 461 (828)
Q Consensus 383 ~g~~~~~vg~~~g~l~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~ 461 (828)
| ..|.|.....+...+..+.. .+.|+||| ... +.++.|+..|+. ..+.+|+
T Consensus 245 -g--~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~----~~~~~L~~~l~~-----------------~~v~~I~ 296 (758)
T 3pxi_A 245 -G--TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAI----DASNILKPSLAR-----------------GELQCIG 296 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC----C------------CCCTTS-----------------SSCEEEE
T ss_pred -c--ccccchHHHHHHHHHHHHHhcCCEEEEEc----Cch----hHHHHHHHHHhc-----------------CCEEEEe
Confidence 1 14667777777776665443 34599999 111 225666666652 2578999
Q ss_pred ecCCCC-----CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 462 TANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 462 TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
|||... .++++|++||..|.|+.|+.+++.+|++..+. .... ..++.++++++..++....+
T Consensus 297 at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~-~~~~-----~~~~~i~~~al~~~~~~s~~ 363 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRD-RYEA-----HHRVSITDDAIEAAVKLSDR 363 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT-TSGG-----GSSCSCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH-HHHH-----hcCCCCCHHHHHHHHHHhhc
Confidence 999988 79999999999999999999999999987642 1111 23467899999888774433
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=3.1e-13 Score=150.15 Aligned_cols=201 Identities=16% Similarity=0.147 Sum_probs=134.6
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh-----------CCCeEEEecCCcC-chh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-----------GRKFIRISLGGVK-DEA 380 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l-----------~~~~~~i~~~~~~-~~~ 380 (828)
.+++|+++.++.+...+...... ..+.+++|+||||||||++|+++++.+ +.+++.+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN--EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT--CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 56899999999998887654332 345689999999999999999999987 7788888876543 221
Q ss_pred --------hhccCcccccccCcchHHHHHHh-cCCCCcEEEEecccccCCCCCCChHHH-HHHhcCcccccccccccCCe
Q 003349 381 --------DIRGHRRTYIGSMPGRLIDGLKR-VGVCNPVMLLDEIDKTGSDVRGDPASA-LLEVLDPEQNKTFNDHYLNV 450 (828)
Q Consensus 381 --------~l~g~~~~~vg~~~g~l~~~~~~-~~~~~~vl~iDEid~l~~~~~~~~~~~-Ll~~ld~~~~~~~~~~~~~~ 450 (828)
.+.+......|.....+...+.. .....+++||||+|.+..... ++. +..+++..
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~---~~~~l~~l~~~~------------ 162 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRG---GDIVLYQLLRSD------------ 162 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTT---SHHHHHHHHTSS------------
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCC---CceeHHHHhcCC------------
Confidence 22222222334333343333332 222233999999999875421 344 44554321
Q ss_pred eecCCCcEEEEecCCC---CCCCccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHH
Q 003349 451 PFDLSKVIFVATANRA---QPIPPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQR 526 (828)
Q Consensus 451 ~~~~~~viiI~TtN~~---~~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~ 526 (828)
.++.||+|||.. ..+++++++||. .+.|++|+.++..+|++.++.. +.. ...+++++++.+++.
T Consensus 163 ----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~------~~~--~~~~~~~~~~~i~~~ 230 (384)
T 2qby_B 163 ----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY------GLI--KGTYDDEILSYIAAI 230 (384)
T ss_dssp ----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH------TSC--TTSCCSHHHHHHHHH
T ss_pred ----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh------hcc--cCCcCHHHHHHHHHH
Confidence 357899999987 688999999984 8999999999999999987531 111 246788899888876
Q ss_pred hhhh-hchHHHHHHHHH
Q 003349 527 YTRE-AGVRNLERNLAA 542 (828)
Q Consensus 527 ~~~~-~g~R~l~~~i~~ 542 (828)
+... ..+|.+...+..
T Consensus 231 ~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 231 SAKEHGDARKAVNLLFR 247 (384)
T ss_dssp HHTTCCCHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHH
Confidence 5422 234544444433
No 71
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.5e-14 Score=169.21 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=108.5
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHHhhh-----CCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchh
Q 003349 306 AAKERLDSDHYGLVRVKQRIIEYLAVRKL-----KPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEA 380 (828)
Q Consensus 306 ~~~~~l~~~i~G~~~~~~~l~~~l~~~~~-----~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~ 380 (828)
.+...+...++|++.+++.+...+..... .......++||+||||||||++|+++|+.+++..+.... .....
T Consensus 288 ~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~--~~~~~ 365 (595)
T 3f9v_A 288 RIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGK--GSTAA 365 (595)
T ss_dssp THHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTT--CSTTT
T ss_pred HHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCC--ccccc
Confidence 34456778899999998877543321100 000122389999999999999999999998765443211 01111
Q ss_pred hhccCcc--ccccc---CcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCC
Q 003349 381 DIRGHRR--TYIGS---MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 381 ~l~g~~~--~~vg~---~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
.+.+... ...|. .+|.+. .+ .++|+||||||++.++. ++.|+++|+.+.... ........-..
T Consensus 366 ~l~~~~~~~~~~g~~~~~~G~l~----~A--~~gil~IDEid~l~~~~----q~~Ll~~le~~~i~i--~~~g~~~~~~~ 433 (595)
T 3f9v_A 366 GLTAAVVREKGTGEYYLEAGALV----LA--DGGIAVIDEIDKMRDED----RVAIHEAMEQQTVSI--AKAGIVAKLNA 433 (595)
T ss_dssp TSEEECSSGGGTSSCSEEECHHH----HH--SSSEECCTTTTCCCSHH----HHHHHHHHHSSSEEE--ESSSSEEEECC
T ss_pred cccceeeeccccccccccCCeeE----ec--CCCcEEeehhhhCCHhH----hhhhHHHHhCCEEEE--ecCCcEEEecC
Confidence 2211110 01111 123322 22 25699999999998876 899999998653211 11111111235
Q ss_pred CcEEEEecCCCC-------------CCCccccCceE-EEEcCCCCHHHHHHHHHHhh
Q 003349 456 KVIFVATANRAQ-------------PIPPPLLDRME-VIELPGYTPEEKLRIAMRHL 498 (828)
Q Consensus 456 ~viiI~TtN~~~-------------~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l 498 (828)
++.||+|||+.. .++++|++||+ ++.+.++..++...|++..+
T Consensus 434 ~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il 490 (595)
T 3f9v_A 434 RAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYIL 490 (595)
T ss_dssp CCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHH
T ss_pred ceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999986 89999999997 44444444444666665543
No 72
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=2.6e-13 Score=146.86 Aligned_cols=182 Identities=18% Similarity=0.239 Sum_probs=126.2
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC-----CCeEEEecCCcCchhhhccCcc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG-----RKFIRISLGGVKDEADIRGHRR 387 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~-----~~~~~i~~~~~~~~~~l~g~~~ 387 (828)
.+++|++.+++.+...+.. ...++++|+||||+|||++|+++++.+. ..+..++++.......+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i----- 89 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV----- 89 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-----
T ss_pred HHHHCCHHHHHHHHHHHHc------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-----
Confidence 4588999999998887652 2234599999999999999999999862 23445554432111111
Q ss_pred cccccCcchHHHHHH--hcC--C-CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEe
Q 003349 388 TYIGSMPGRLIDGLK--RVG--V-CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVAT 462 (828)
Q Consensus 388 ~~vg~~~g~l~~~~~--~~~--~-~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~T 462 (828)
..+...+. ... . ...+++|||+|.+.... ++.|+..++.. ..++.||++
T Consensus 90 -------~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~----~~~L~~~le~~---------------~~~~~~il~ 143 (323)
T 1sxj_B 90 -------RNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA----QQALRRTMELY---------------SNSTRFAFA 143 (323)
T ss_dssp -------HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHH----HHTTHHHHHHT---------------TTTEEEEEE
T ss_pred -------HHHHHHHHhccccCCCCCceEEEEECcccCCHHH----HHHHHHHHhcc---------------CCCceEEEE
Confidence 01122222 111 1 24599999999987654 67788887642 235688889
Q ss_pred cCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHH
Q 003349 463 ANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAA 542 (828)
Q Consensus 463 tN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~ 542 (828)
||.+..+.+++.+||..+.|++|+.++..+++...+.. .++.++++++..+++.+.+ ..|.+...++.
T Consensus 144 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~l~~~~~G--~~r~a~~~l~~ 211 (323)
T 1sxj_B 144 CNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL----------EDVKYTNDGLEAIIFTAEG--DMRQAINNLQS 211 (323)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----------HTCCBCHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred eCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 99999999999999999999999999999999877521 2356899999998886543 34444444444
Q ss_pred H
Q 003349 543 L 543 (828)
Q Consensus 543 l 543 (828)
.
T Consensus 212 ~ 212 (323)
T 1sxj_B 212 T 212 (323)
T ss_dssp H
T ss_pred H
Confidence 3
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.47 E-value=1.2e-13 Score=169.34 Aligned_cols=202 Identities=20% Similarity=0.266 Sum_probs=127.4
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchhh
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEAD 381 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~~ 381 (828)
.+.++|+++.++++.+.+.. ....+++|+||||||||++|+++|+.+ +.+++.++++......
T Consensus 169 ld~viGr~~~i~~l~~~l~~------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~- 241 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLR------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA- 241 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHC------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred CcccCCcHHHHHHHHHHHhc------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccC-
Confidence 45689999999999887742 234568999999999999999999987 6677777776543211
Q ss_pred hccCcccccccCcchHHHHHHhcCC--CCcEEEEecccccCCCCC----CChHHHHHHhcCcccccccccccCCeeecCC
Q 003349 382 IRGHRRTYIGSMPGRLIDGLKRVGV--CNPVMLLDEIDKTGSDVR----GDPASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 382 l~g~~~~~vg~~~g~l~~~~~~~~~--~~~vl~iDEid~l~~~~~----~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
.|.|.....+...+..... .+.|+||||++.+.+... .+..+.|..+++. .
T Consensus 242 ------~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-----------------~ 298 (854)
T 1qvr_A 242 ------KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-----------------G 298 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-----------------T
T ss_pred ------ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-----------------C
Confidence 3455555556666655432 245999999999875431 1224555555532 2
Q ss_pred CcEEEEecCCCC----CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhh
Q 003349 456 KVIFVATANRAQ----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREA 531 (828)
Q Consensus 456 ~viiI~TtN~~~----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~ 531 (828)
++.+|++||.+. .++++|++||+.|.|++|+.+++.+|++..+. +....+ ++.++++++..++....+..
T Consensus 299 ~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~-~~~~~~-----~~~i~~~al~~~~~ls~r~i 372 (854)
T 1qvr_A 299 ELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKE-KYEVHH-----GVRISDSAIIAAATLSHRYI 372 (854)
T ss_dssp CCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHH-HHHHHT-----TCEECHHHHHHHHHHHHHHC
T ss_pred CeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhh-hhhhhc-----CCCCCHHHHHHHHHHHhhhc
Confidence 456888888764 58999999999999999999999999977653 222233 36789999998887555544
Q ss_pred chHHHHHHHHHHHHHHHH
Q 003349 532 GVRNLERNLAALARAAAV 549 (828)
Q Consensus 532 g~R~l~~~i~~l~~~a~~ 549 (828)
.-|.+......++.+|+.
T Consensus 373 ~~~~lp~kai~lldea~a 390 (854)
T 1qvr_A 373 TERRLPDKAIDLIDEAAA 390 (854)
T ss_dssp CSSCTHHHHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHH
Confidence 444444444445544443
No 74
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.45 E-value=8.7e-13 Score=145.96 Aligned_cols=195 Identities=22% Similarity=0.208 Sum_probs=127.5
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE--EecCCcCchhhhc-cCcccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGGVKDEADIR-GHRRTY 389 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~--i~~~~~~~~~~l~-g~~~~~ 389 (828)
.+++|++.+++.+...+... ..+..++|+||||||||++|+++++.++..... ..|........+. +....+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~-----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT-----CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSC
T ss_pred hhccCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCce
Confidence 45899999999998877532 223468999999999999999999988643211 0111100000000 000000
Q ss_pred c---c---cCcchHHHHHHhcC---C--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcE
Q 003349 390 I---G---SMPGRLIDGLKRVG---V--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458 (828)
Q Consensus 390 v---g---~~~g~l~~~~~~~~---~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vi 458 (828)
. + .....+...+.... . ...|++|||+|.+.... ++.|+..++.. ..+++
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~----~~~Ll~~le~~---------------~~~~~ 151 (373)
T 1jr3_A 91 IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS----FNALLKTLEEP---------------PEHVK 151 (373)
T ss_dssp EEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHH----HHHHHHHHHSC---------------CSSEE
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHH----HHHHHHHHhcC---------------CCceE
Confidence 0 0 00122333333322 1 23499999999997654 78888888631 23578
Q ss_pred EEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHH
Q 003349 459 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLER 538 (828)
Q Consensus 459 iI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~ 538 (828)
+|++||.+..+.+++++|+..+.|++++.++..+++...+.. .++.++++++..++....+ ..|.+.+
T Consensus 152 ~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~----------~~~~~~~~a~~~l~~~~~G--~~r~~~~ 219 (373)
T 1jr3_A 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----------EHIAHEPRALQLLARAAEG--SLRDALS 219 (373)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----------HTCCBCHHHHHHHHHHSSS--CHHHHHH
T ss_pred EEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHCCC--CHHHHHH
Confidence 889999888999999999999999999999999999877531 2357899999988876533 4555555
Q ss_pred HHHHH
Q 003349 539 NLAAL 543 (828)
Q Consensus 539 ~i~~l 543 (828)
.++.+
T Consensus 220 ~l~~~ 224 (373)
T 1jr3_A 220 LTDQA 224 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 75
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=3.1e-13 Score=149.98 Aligned_cols=194 Identities=18% Similarity=0.125 Sum_probs=127.3
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---------CCCeEEEecCCcCchhhhc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---------GRKFIRISLGGVKDEADIR 383 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---------~~~~~~i~~~~~~~~~~l~ 383 (828)
.+++|.++.++.+..++..... ...+.+++|+||||||||++++++++.+ +..++.+++....+...+.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 4688999999988877643211 2345689999999999999999999988 6677788877654433221
Q ss_pred -------cCcccccccCcchHHHHHHh-c--CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeec
Q 003349 384 -------GHRRTYIGSMPGRLIDGLKR-V--GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 384 -------g~~~~~vg~~~g~l~~~~~~-~--~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
+......|...+.+...+.. . .....++||||++.+.... ..+..|+.+++..... +.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--~~~~~l~~l~~~~~~~---------~~- 164 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--GGQDLLYRITRINQEL---------GD- 164 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--THHHHHHHHHHGGGCC------------
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--CCChHHHhHhhchhhc---------CC-
Confidence 11111223223332332222 1 1123399999999987541 1256666666422110 00
Q ss_pred CCCcEEEEecCCC---CCCCccccCce--EEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhh
Q 003349 454 LSKVIFVATANRA---QPIPPPLLDRM--EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 528 (828)
Q Consensus 454 ~~~viiI~TtN~~---~~l~~aLl~R~--~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~ 528 (828)
..++.+|+|||.. ..+++++.+|| ..+.|++|+.++..+|++..+... . ....+++++++.+++.+.
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~------~--~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA------F--NPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH------B--CTTTBCSSHHHHHHHHHH
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh------c--cCCCCCHHHHHHHHHHHH
Confidence 2367899999987 68899999999 589999999999999998876311 0 124678888888887554
No 76
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.44 E-value=1.8e-12 Score=141.41 Aligned_cols=199 Identities=23% Similarity=0.279 Sum_probs=129.1
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCccccccc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGS 392 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~ 392 (828)
.+++|++.+++.+...+....... ....+++|+|||||||||+++++|+.++.++...+......
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-------------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-------------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS--------------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC--------------
Confidence 357899988888877765432211 23467999999999999999999999988766544322111
Q ss_pred CcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccc---cccCCeeecCCCcEEEEecCCCCCC
Q 003349 393 MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFN---DHYLNVPFDLSKVIFVATANRAQPI 469 (828)
Q Consensus 393 ~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~---~~~~~~~~~~~~viiI~TtN~~~~l 469 (828)
.+.+...+... ....|+|+||++.+.+.. .+.|+..++........ ............+.+++++|.+..+
T Consensus 90 -~~~l~~~~~~~-~~~~v~~iDE~~~l~~~~----~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~L 163 (334)
T 1in4_A 90 -QGDMAAILTSL-ERGDVLFIDEIHRLNKAV----EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLL 163 (334)
T ss_dssp -HHHHHHHHHHC-CTTCEEEEETGGGCCHHH----HHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGS
T ss_pred -HHHHHHHHHHc-cCCCEEEEcchhhcCHHH----HHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccC
Confidence 12233333222 234699999999987643 56666655422110000 0000111223457788899999999
Q ss_pred CccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 470 PPPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 470 ~~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
++++++||. .+.|++++.+++.+|++.... . .++.++++++.++++...+ ..|.+.+.+..+.
T Consensus 164 s~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~-----~-----~~~~~~~~~~~~ia~~~~G--~~R~a~~ll~~~~ 227 (334)
T 1in4_A 164 SSPLRSRFGIILELDFYTVKELKEIIKRAAS-----L-----MDVEIEDAAAEMIAKRSRG--TPRIAIRLTKRVR 227 (334)
T ss_dssp CHHHHTTCSEEEECCCCCHHHHHHHHHHHHH-----H-----TTCCBCHHHHHHHHHTSTT--CHHHHHHHHHHHH
T ss_pred CHHHHHhcCceeeCCCCCHHHHHHHHHHHHH-----H-----cCCCcCHHHHHHHHHhcCC--ChHHHHHHHHHHH
Confidence 999999996 689999999999999987642 1 2357899999999886544 3455555555443
No 77
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=6.2e-13 Score=153.74 Aligned_cols=200 Identities=17% Similarity=0.206 Sum_probs=128.2
Q ss_pred ccccchHHHHHHHHHHHHHhhhC-----------CCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhh
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLK-----------PDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEAD 381 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~-----------~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~ 381 (828)
.+++|++.+++.+.+++...... +.....++||+||||||||++|+++|+.++.+++.++++.......
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHH
Confidence 46899999999999988652210 0013468999999999999999999999999999999887654322
Q ss_pred hccCcccccccCcchHHHHHHhc------CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCC
Q 003349 382 IRGHRRTYIGSMPGRLIDGLKRV------GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 382 l~g~~~~~vg~~~g~l~~~~~~~------~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
+........+. ..+...|..+ .....|+||||+|.+..... ...+.|+++++..
T Consensus 119 ~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-~~l~~L~~~l~~~----------------- 178 (516)
T 1sxj_A 119 LNAGVKNALDN--MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-GGVGQLAQFCRKT----------------- 178 (516)
T ss_dssp HHHTGGGGTTB--CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-THHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHhcc--ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-HHHHHHHHHHHhc-----------------
Confidence 21110000000 0011111111 12345999999999987541 2247777777531
Q ss_pred CcEEEEecCCCC-CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchH
Q 003349 456 KVIFVATANRAQ-PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVR 534 (828)
Q Consensus 456 ~viiI~TtN~~~-~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R 534 (828)
++.||+++|... ..-+++.+|+..+.|++|+.+++.+++...+.. .++.++++++..|++.+. ..+|
T Consensus 179 ~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~----------~~~~i~~~~l~~la~~s~--GdiR 246 (516)
T 1sxj_A 179 STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR----------EKFKLDPNVIDRLIQTTR--GDIR 246 (516)
T ss_dssp SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH----------HTCCCCTTHHHHHHHHTT--TCHH
T ss_pred CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHcC--CcHH
Confidence 122444444432 233568888889999999999999988776421 135688899999887653 3466
Q ss_pred HHHHHHHHHH
Q 003349 535 NLERNLAALA 544 (828)
Q Consensus 535 ~l~~~i~~l~ 544 (828)
.+.+.++.++
T Consensus 247 ~~i~~L~~~~ 256 (516)
T 1sxj_A 247 QVINLLSTIS 256 (516)
T ss_dssp HHHHHHTHHH
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.43 E-value=9e-13 Score=159.86 Aligned_cols=202 Identities=19% Similarity=0.247 Sum_probs=135.2
Q ss_pred cccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchhh
Q 003349 312 DSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEAD 381 (828)
Q Consensus 312 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~~ 381 (828)
.+.++|++..++++.+.+.. ..+.+++|+||||||||++|++++..+ +..++.++++....
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~--- 255 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCR------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA--- 255 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C---
T ss_pred CCCccCCHHHHHHHHHHHhc------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc---
Confidence 45689999999998887642 245689999999999999999999987 33444444443221
Q ss_pred hccCcccccccCcchHHHHHHhcCCC-CcEEEEecccccCCCCCC--Ch---HHHHHHhcCcccccccccccCCeeecCC
Q 003349 382 IRGHRRTYIGSMPGRLIDGLKRVGVC-NPVMLLDEIDKTGSDVRG--DP---ASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 382 l~g~~~~~vg~~~g~l~~~~~~~~~~-~~vl~iDEid~l~~~~~~--~~---~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
+ ..|.|.....+...+...... +.|+||||++.+.+.... .. .+.|..+++ ..
T Consensus 256 --~--~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-----------------~~ 314 (758)
T 1r6b_X 256 --G--TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-----------------SG 314 (758)
T ss_dssp --C--CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-----------------SC
T ss_pred --c--ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-----------------CC
Confidence 1 145566566666666655432 459999999998754321 12 223333332 23
Q ss_pred CcEEEEecCCCC-----CCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhh
Q 003349 456 KVIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTRE 530 (828)
Q Consensus 456 ~viiI~TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~ 530 (828)
++.+|++||.++ .++++|.+||..+.|+.|+.+++.+|++..+. .....+ .+.++++++..++....+.
T Consensus 315 ~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~-~~~~~~-----~v~~~~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 315 KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKP-KYEAHH-----DVRYTAKAVRAAVELAVKY 388 (758)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHH-HHHHHH-----TCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHH-HHHHhc-----CCCCCHHHHHHHHHHhhhh
Confidence 567888888643 67899999999999999999999999987643 222223 3578899998888755554
Q ss_pred hchHHHHHHHHHHHHHHHH
Q 003349 531 AGVRNLERNLAALARAAAV 549 (828)
Q Consensus 531 ~g~R~l~~~i~~l~~~a~~ 549 (828)
.+.+.+...+..++.+|+.
T Consensus 389 i~~~~lp~~~i~lld~a~~ 407 (758)
T 1r6b_X 389 INDRHLPDKAIDVIDEAGA 407 (758)
T ss_dssp CTTSCTTHHHHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHH
Confidence 4444443445555655543
No 79
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.43 E-value=1.4e-13 Score=155.70 Aligned_cols=172 Identities=20% Similarity=0.247 Sum_probs=114.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh-----CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCC-CCcEEEE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL-----GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGV-CNPVMLL 413 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l-----~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~-~~~vl~i 413 (828)
+.+++|+||||||||+||+++++.+ +.++..+++.... ..+. +.........|..... ...++||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~vL~I 200 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL--NDLV-------DSMKEGKLNEFREKYRKKVDILLI 200 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH--HHHH-------HHHHTTCHHHHHHHHTTTCSEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH--HHHH-------HHHHcccHHHHHHHhcCCCCEEEE
Confidence 5679999999999999999999988 6677777765431 1111 1100001112222212 3569999
Q ss_pred ecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC---CCCccccCce---EEEEcCCCCH
Q 003349 414 DEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---PIPPPLLDRM---EVIELPGYTP 487 (828)
Q Consensus 414 DEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~---~l~~aLl~R~---~~i~~~~~~~ 487 (828)
||++.+..+. ..+..|+..++.... ....++++|.|.+. .++++|++|| .++.+++|+.
T Consensus 201 DEi~~l~~~~--~~q~~l~~~l~~l~~-------------~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 201 DDVQFLIGKT--GVQTELFHTFNELHD-------------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp ECGGGGSSCH--HHHHHHHHHHHHHHT-------------TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred eCcccccCCh--HHHHHHHHHHHHHHH-------------CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 9999998631 126777777753211 11234444444444 3889999999 4799999999
Q ss_pred HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 003349 488 EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAA 547 (828)
Q Consensus 488 ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a 547 (828)
+++.+|++..+.. .++.++++++.+|+..+. .++|.+...++.++..+
T Consensus 266 e~r~~iL~~~~~~----------~~~~i~~e~l~~la~~~~--gn~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 266 ETRKSIARKMLEI----------EHGELPEEVLNFVAENVD--DNLRRLRGAIIKLLVYK 313 (440)
T ss_dssp HHHHHHHHHHHHH----------HTCCCCTTHHHHHHHHCC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------cCCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence 9999999887531 235688999999987664 46788887777776543
No 80
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=1.1e-12 Score=143.46 Aligned_cols=169 Identities=22% Similarity=0.297 Sum_probs=118.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCC-----eEEEecCCcCchhhhccCcc
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK-----FIRISLGGVKDEADIRGHRR 387 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~-----~~~i~~~~~~~~~~l~g~~~ 387 (828)
.+++|++.+++.+...+... ..++++|+|||||||||+++++|+.+... +..++.+.......+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~i----- 93 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVV----- 93 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHH-----
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHH-----
Confidence 35789999999888776532 22359999999999999999999987432 233333221111000
Q ss_pred cccccCcchHHHHHHh-c-C--CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEec
Q 003349 388 TYIGSMPGRLIDGLKR-V-G--VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATA 463 (828)
Q Consensus 388 ~~vg~~~g~l~~~~~~-~-~--~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~Tt 463 (828)
. .....+.. . . ....|++|||+|.+.... +++|+..++.. ..++.||+++
T Consensus 94 ------r-~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~----~~~L~~~le~~---------------~~~~~~il~~ 147 (340)
T 1sxj_C 94 ------R-NQIKDFASTRQIFSKGFKLIILDEADAMTNAA----QNALRRVIERY---------------TKNTRFCVLA 147 (340)
T ss_dssp ------H-THHHHHHHBCCSSSCSCEEEEETTGGGSCHHH----HHHHHHHHHHT---------------TTTEEEEEEE
T ss_pred ------H-HHHHHHHhhcccCCCCceEEEEeCCCCCCHHH----HHHHHHHHhcC---------------CCCeEEEEEe
Confidence 0 11112221 1 1 124599999999997654 88899988742 2346788889
Q ss_pred CCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhh
Q 003349 464 NRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 528 (828)
Q Consensus 464 N~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~ 528 (828)
|.+..+.+++++||..+.|++++.++..+++...+. ..++.++++++..++....
T Consensus 148 n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~----------~~~~~i~~~~~~~i~~~s~ 202 (340)
T 1sxj_C 148 NYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLV----------HEKLKLSPNAEKALIELSN 202 (340)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH----------TTTCCBCHHHHHHHHHHHT
T ss_pred cCccccchhHHhhceeEeccCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999888877642 2246789999988887543
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=4.9e-13 Score=147.06 Aligned_cols=194 Identities=15% Similarity=0.201 Sum_probs=121.3
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh-CCCeEEEecCCc---------------
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-GRKFIRISLGGV--------------- 376 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l-~~~~~~i~~~~~--------------- 376 (828)
.+++|++.+++.+...+. .....++++|+||||+||||+++++++.+ +.....+.+.+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~-----~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSD-----QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTT-----CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHh-----hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 458899998887766541 11233459999999999999999999954 322211111100
Q ss_pred CchhhhccCcccccccCcc-hHHHHHHhc---------------CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccc
Q 003349 377 KDEADIRGHRRTYIGSMPG-RLIDGLKRV---------------GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQN 440 (828)
Q Consensus 377 ~~~~~l~g~~~~~vg~~~g-~l~~~~~~~---------------~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~ 440 (828)
.....+.-.. ...+...+ .+.+.+... .....|++|||++.+.+.. ++.|++.|+..
T Consensus 89 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~----~~~L~~~le~~-- 161 (354)
T 1sxj_E 89 SSPYHLEITP-SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA----QAALRRTMEKY-- 161 (354)
T ss_dssp ECSSEEEECC-C----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHH----HHHHHHHHHHS--
T ss_pred cccceEEecH-hhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHH----HHHHHHHHHhh--
Confidence 0000000000 00011010 122222211 1123499999999976544 78899888742
Q ss_pred cccccccCCeeecCCCcEEEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccC-HHH
Q 003349 441 KTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIP-EAM 519 (828)
Q Consensus 441 ~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~-~~~ 519 (828)
..++.||++||.+..+.+++++||..+.|++|+.+++.++++..+.. .++.++ +++
T Consensus 162 -------------~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~ 218 (354)
T 1sxj_E 162 -------------SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN----------ERIQLETKDI 218 (354)
T ss_dssp -------------TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----------HTCEECCSHH
T ss_pred -------------cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH----------cCCCCCcHHH
Confidence 13468899999999999999999999999999999999999877531 235788 899
Q ss_pred HHHHHHHhhhhhchHHHHHHHHHH
Q 003349 520 VKLVIQRYTREAGVRNLERNLAAL 543 (828)
Q Consensus 520 l~~l~~~~~~~~g~R~l~~~i~~l 543 (828)
+..++..+. .++|.+...++.+
T Consensus 219 l~~i~~~~~--G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 219 LKRIAQASN--GNLRVSLLMLESM 240 (354)
T ss_dssp HHHHHHHHT--TCHHHHHHHHTHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHH
Confidence 999887654 3455555555443
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.42 E-value=2.6e-13 Score=129.51 Aligned_cols=131 Identities=12% Similarity=0.099 Sum_probs=96.6
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCccccc
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYI 390 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~v 390 (828)
+++|.+...+.+.+.+.... ..+.+++|+||||||||++|+++++.. +.+++ ++|+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----------
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----------
Confidence 46788888888888776542 244579999999999999999999987 56888 888875432
Q ss_pred ccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC----
Q 003349 391 GSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA---- 466 (828)
Q Consensus 391 g~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~---- 466 (828)
......+..+. ++++||||||.+.+.. +..|+++|... ..++.+|+|||.+
T Consensus 66 ----~~~~~~~~~a~--~g~l~ldei~~l~~~~----q~~Ll~~l~~~---------------~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 66 ----PQLNDFIALAQ--GGTLVLSHPEHLTREQ----QYHLVQLQSQE---------------HRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp ----SCHHHHHHHHT--TSCEEEECGGGSCHHH----HHHHHHHHHSS---------------SCSSCEEEEESSCHHHH
T ss_pred ----hhhhcHHHHcC--CcEEEEcChHHCCHHH----HHHHHHHHhhc---------------CCCEEEEEECCcCHHHH
Confidence 12233444443 4699999999998766 88899888321 2346789999975
Q ss_pred ---CCCCccccCceE--EEEcCCC
Q 003349 467 ---QPIPPPLLDRME--VIELPGY 485 (828)
Q Consensus 467 ---~~l~~aLl~R~~--~i~~~~~ 485 (828)
..+++.|..|+. .|.+|++
T Consensus 121 ~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 121 AASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp HHHSCCCHHHHHHHHHHEEECCCC
T ss_pred HHcCCCCHHHHHHhcCCEEeCCCC
Confidence 378889999985 5888876
No 83
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.40 E-value=1.4e-13 Score=136.18 Aligned_cols=146 Identities=23% Similarity=0.286 Sum_probs=96.8
Q ss_pred hcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----------CCCeEEEecCCcCchh
Q 003349 311 LDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEA 380 (828)
Q Consensus 311 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~ 380 (828)
...+++|++..++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+++......
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 92 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAG- 92 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHH-
T ss_pred ccchhhcchHHHHHHHHHHhC------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcC-
Confidence 345789999988888776632 345678999999999999999999987 445555554332110
Q ss_pred hhccCcccccccCcchHHHHHHhcC--CCCcEEEEecccccCCCCC-----CChHHHHHHhcCcccccccccccCCeeec
Q 003349 381 DIRGHRRTYIGSMPGRLIDGLKRVG--VCNPVMLLDEIDKTGSDVR-----GDPASALLEVLDPEQNKTFNDHYLNVPFD 453 (828)
Q Consensus 381 ~l~g~~~~~vg~~~g~l~~~~~~~~--~~~~vl~iDEid~l~~~~~-----~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~ 453 (828)
..+.|.....+...+.... ..+.++||||++.+.+... .+.++.|...++.
T Consensus 93 ------~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~---------------- 150 (187)
T 2p65_A 93 ------AKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR---------------- 150 (187)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT----------------
T ss_pred ------CCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc----------------
Confidence 0122222223333333221 1235999999999974321 2335666666542
Q ss_pred CCCcEEEEecCCCC-----CCCccccCceEEEEcCCCC
Q 003349 454 LSKVIFVATANRAQ-----PIPPPLLDRMEVIELPGYT 486 (828)
Q Consensus 454 ~~~viiI~TtN~~~-----~l~~aLl~R~~~i~~~~~~ 486 (828)
.++.+|+|+|.+. .+++++++||..+.+++|+
T Consensus 151 -~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 151 -GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp -TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred -CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 3467889988765 6899999999999998875
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.39 E-value=3.6e-12 Score=139.13 Aligned_cols=171 Identities=13% Similarity=0.148 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE--EecCCc-----------Cchhhhcc
Q 003349 318 LVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR--ISLGGV-----------KDEADIRG 384 (828)
Q Consensus 318 ~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~--i~~~~~-----------~~~~~l~g 384 (828)
++++.+.+...+... ..++.+||+||||+|||++|+++|+.+...... ..|+.. .+...+..
T Consensus 7 ~~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 81 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAP 81 (334)
T ss_dssp GHHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECC
T ss_pred hHHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec
Confidence 344555555554321 234569999999999999999999988543210 001100 00000000
Q ss_pred Cc-ccccccCcchHHHHHHhc---CC--CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcE
Q 003349 385 HR-RTYIGSMPGRLIDGLKRV---GV--CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458 (828)
Q Consensus 385 ~~-~~~vg~~~g~l~~~~~~~---~~--~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vi 458 (828)
.. ....+ ...+.+.+... +. ...|++|||+|.+.... +++|++.|++. ..+++
T Consensus 82 ~~~~~~~~--i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a----~naLLk~lEep---------------~~~~~ 140 (334)
T 1a5t_A 82 EKGKNTLG--VDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAA----ANALLKTLEEP---------------PAETW 140 (334)
T ss_dssp CTTCSSBC--HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHH----HHHHHHHHTSC---------------CTTEE
T ss_pred cccCCCCC--HHHHHHHHHHHhhccccCCcEEEEECchhhcCHHH----HHHHHHHhcCC---------------CCCeE
Confidence 00 00000 12233333332 21 23499999999998665 89999999853 24678
Q ss_pred EEEecCCCCCCCccccCceEEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhh
Q 003349 459 FVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 459 iI~TtN~~~~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~ 529 (828)
||++||.++.+.+++++|+..+.|++|+.++..+++.... .++++++..++....+
T Consensus 141 ~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------------~~~~~~~~~l~~~s~G 196 (334)
T 1a5t_A 141 FFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------------TMSQDALLAALRLSAG 196 (334)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------------CCCHHHHHHHHHHTTT
T ss_pred EEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------------CCCHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999998887652 4678888887765443
No 85
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=99.39 E-value=1.2e-12 Score=112.51 Aligned_cols=93 Identities=37% Similarity=0.609 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHH-HhhhhcCC
Q 003349 483 PGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAE-QEQEQALP 561 (828)
Q Consensus 483 ~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~-~~~~~~~~ 561 (828)
+.|+.+|+.+|+++||.|++++.+|+....+.++++++..++..|++++|+|+|++.|..+||+++.+++. . .
T Consensus 1 sGYt~~EK~~IAk~~LiPkql~~~GL~~~~~~i~d~al~~iI~~YTREaGVRnLer~i~~i~RK~a~~i~~~~---~--- 74 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDK---S--- 74 (94)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTCT---T---
T ss_pred CCCCHHHHHHHHHHhccHHHHHHhCCChhhceECHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHcC---C---
Confidence 57999999999999999999999999999999999999999999999999999999999999999998875 2 0
Q ss_pred CCccccccCCccccccccCCCeeEEeeccCCCcccccccccccCcceeecccchhhccCCCcc
Q 003349 562 SSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRF 624 (828)
Q Consensus 562 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~l~~~~~ 624 (828)
..++.++.++|++|||++.|
T Consensus 75 -------------------------------------------~~~v~v~~~~l~~~LG~~~f 94 (94)
T 1qzm_A 75 -------------------------------------------LKHIEINGDNLHDYLGVQRF 94 (94)
T ss_dssp -------------------------------------------CCCEEECTTTTHHHHCSCCC
T ss_pred -------------------------------------------CCCeeECHHHHHHHcCCCCC
Confidence 12478999999999999875
No 86
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.39 E-value=2.7e-12 Score=132.40 Aligned_cols=176 Identities=19% Similarity=0.230 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCchhhhccCcccccccCcc
Q 003349 319 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKDEADIRGHRRTYIGSMPG 395 (828)
Q Consensus 319 ~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g 395 (828)
..+.+.+..++.. ..+.+++|+||||||||++|+++++.+. .++..++++..... + .
T Consensus 37 ~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~---------~----~- 96 (242)
T 3bos_A 37 DELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI---------S----T- 96 (242)
T ss_dssp HHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS---------C----G-
T ss_pred HHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH---------H----H-
Confidence 4555555554432 2467899999999999999999998874 55666666543221 0 0
Q ss_pred hHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCC-CC---CCCc
Q 003349 396 RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANR-AQ---PIPP 471 (828)
Q Consensus 396 ~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~-~~---~l~~ 471 (828)
+.+... ....++||||++.+.... ..++.|+.+++.... ...+.+|+|+|. +. .+.+
T Consensus 97 ---~~~~~~-~~~~vliiDe~~~~~~~~--~~~~~l~~~l~~~~~-------------~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 97 ---ALLEGL-EQFDLICIDDVDAVAGHP--LWEEAIFDLYNRVAE-------------QKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp ---GGGTTG-GGSSEEEEETGGGGTTCH--HHHHHHHHHHHHHHH-------------HCSCEEEEEESSCTTTTTCCCH
T ss_pred ---HHHHhc-cCCCEEEEeccccccCCH--HHHHHHHHHHHHHHH-------------cCCCeEEEEcCCCHHHHHHhhh
Confidence 001111 124699999999987542 115667777653211 112335555553 33 4568
Q ss_pred cccCce---EEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 003349 472 PLLDRM---EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALAR 545 (828)
Q Consensus 472 aLl~R~---~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~ 545 (828)
++.+|| .++.|++|+.+++.+++..++. .. ++.++++++++++..+.+ ++|.+.+.++.++.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~~~~l~~~~~g--~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAA-----MR-----GLQLPEDVGRFLLNRMAR--DLRTLFDVLDRLDK 222 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHH-----HT-----TCCCCHHHHHHHHHHTTT--CHHHHHHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHccC--CHHHHHHHHHHHHH
Confidence 999999 7899999999999999988753 22 357899999999986643 56777666666654
No 87
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=3.6e-12 Score=141.63 Aligned_cols=191 Identities=15% Similarity=0.140 Sum_probs=126.8
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----CCCeEEEecCCcCchhhhc-----
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLGGVKDEADIR----- 383 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----~~~~~~i~~~~~~~~~~l~----- 383 (828)
.+++|.+..++.+..++...........++++|+||||||||++++++++.+ +..++.+++....+...+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 4688999999999888865443222223489999999999999999999998 3456777776654432221
Q ss_pred --cCcccccccCcchHHH----HHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCc
Q 003349 384 --GHRRTYIGSMPGRLID----GLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKV 457 (828)
Q Consensus 384 --g~~~~~vg~~~g~l~~----~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~v 457 (828)
+......|.....+.+ .+.. ...+.|++|||++.+.... +..|+..++..... ...++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~----~~~L~~~~~~~~~~-----------~~~~~ 160 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRE-RDLYMFLVLDDAFNLAPDI----LSTFIRLGQEADKL-----------GAFRI 160 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHH-TTCCEEEEEETGGGSCHHH----HHHHHHHTTCHHHH-----------SSCCE
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhh-cCCeEEEEEECccccchHH----HHHHHHHHHhCCCC-----------CcCCE
Confidence 1110111212222222 2222 1224499999999984333 67777777532100 01357
Q ss_pred EEEEecCCC---CCCCccccCceE--EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHh
Q 003349 458 IFVATANRA---QPIPPPLLDRME--VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRY 527 (828)
Q Consensus 458 iiI~TtN~~---~~l~~aLl~R~~--~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~ 527 (828)
.||+++|.+ ..+++.+.+||. .+.|++++.++..+++...+... + ....++++++..+++..
T Consensus 161 ~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~-----~---~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 161 ALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG-----L---AEGSYSEDILQMIADIT 227 (389)
T ss_dssp EEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH-----B---CTTSSCHHHHHHHHHHH
T ss_pred EEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh-----c---CCCCCCHHHHHHHHHHH
Confidence 889999988 678999999996 79999999999999998875311 0 01368999999988865
No 88
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.37 E-value=3.2e-12 Score=141.12 Aligned_cols=211 Identities=18% Similarity=0.267 Sum_probs=143.9
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCC--eEEEecCCcCc---hhhhccCccc-
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK--FIRISLGGVKD---EADIRGHRRT- 388 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~--~~~i~~~~~~~---~~~l~g~~~~- 388 (828)
++|.+.....+...+.... .....++++|++||||+.+|+++....++. ++.++|+.... .+.+.|+.++
T Consensus 131 ~ig~s~~~~~~~~~~~~~a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~ 206 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIA----KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGA 206 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHH----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCS
T ss_pred ccccchHHHHHHhhhhhhh----ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccc
Confidence 4566655555555443322 233458899999999999999999888654 89999987643 4556665543
Q ss_pred ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC--
Q 003349 389 YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-- 466 (828)
Q Consensus 389 ~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-- 466 (828)
+.|.... -...|..+. ++.+|||||+.+++.. |..|+++|+.+..... ....++ ..++.+|++||..
T Consensus 207 ~tga~~~-~~g~~~~a~--~gtlfldei~~l~~~~----Q~~Ll~~l~~~~~~~~---g~~~~~-~~~~rii~at~~~l~ 275 (368)
T 3dzd_A 207 FTGALTR-KKGKLELAD--QGTLFLDEVGELDQRV----QAKLLRVLETGSFTRL---GGNQKI-EVDIRVISATNKNLE 275 (368)
T ss_dssp SSSCCCC-EECHHHHTT--TSEEEEETGGGSCHHH----HHHHHHHHHHSEECCB---TCCCBE-ECCCEEEEEESSCHH
T ss_pred cCCcccc-cCChHhhcC--CCeEEecChhhCCHHH----HHHHHHHHHhCCcccC---CCCcce-eeeeEEEEecCCCHH
Confidence 2232211 112233333 5699999999999877 9999999986543222 111222 3367899999975
Q ss_pred -----CCCCccccCceE--EEEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHH
Q 003349 467 -----QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLE 537 (828)
Q Consensus 467 -----~~l~~aLl~R~~--~i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~ 537 (828)
..+.+.|..|+. .|.+|++.. ++...++..++.. .....+ .....++++++..|.. |.|..++|.|+
T Consensus 276 ~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~-~~~~~~--~~~~~~~~~a~~~L~~-~~wpGNvreL~ 351 (368)
T 3dzd_A 276 EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKK-FAKEYK--KNCFELSEETKEYLMK-QEWKGNVRELK 351 (368)
T ss_dssp HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHH-HHHHTT--CCCCCBCHHHHHHHHT-CCCTTHHHHHH
T ss_pred HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHH-HHHHcC--CCCCCcCHHHHHHHHh-CCCCcHHHHHH
Confidence 378889999996 478898887 7777777766543 333333 2346799999988765 77778899999
Q ss_pred HHHHHHH
Q 003349 538 RNLAALA 544 (828)
Q Consensus 538 ~~i~~l~ 544 (828)
+.|+..+
T Consensus 352 n~i~~~~ 358 (368)
T 3dzd_A 352 NLIERAV 358 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888876
No 89
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.35 E-value=4.8e-12 Score=140.78 Aligned_cols=212 Identities=18% Similarity=0.230 Sum_probs=144.4
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcCc---hhhhccCcc
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVKD---EADIRGHRR 387 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~~---~~~l~g~~~ 387 (828)
.++|.+...+.+.+.+.... .....++++|++|||||++|+++..... .+|+.++|+.+.. .+.+.|+.+
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a----~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~ 213 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKIS----CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEK 213 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHT----TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCT
T ss_pred hhhhccHHhhHHHHHHHHhc----CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCC
Confidence 35565555666665554321 2234579999999999999999998874 5899999998644 456666654
Q ss_pred c-ccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC
Q 003349 388 T-YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA 466 (828)
Q Consensus 388 ~-~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~ 466 (828)
+ +.|.... ....|..+. ++++|||||+.+++.. |..|+++|+.++... .. +......++.+|+|||..
T Consensus 214 g~~tga~~~-~~g~~~~a~--~gtlfldei~~l~~~~----q~~Ll~~l~~~~~~~---~g-~~~~~~~~~rii~at~~~ 282 (387)
T 1ny5_A 214 GAFTGAVSS-KEGFFELAD--GGTLFLDEIGELSLEA----QAKLLRVIESGKFYR---LG-GRKEIEVNVRILAATNRN 282 (387)
T ss_dssp TSSTTCCSC-BCCHHHHTT--TSEEEEESGGGCCHHH----HHHHHHHHHHSEECC---BT-CCSBEECCCEEEEEESSC
T ss_pred CCCCCcccc-cCCceeeCC--CcEEEEcChhhCCHHH----HHHHHHHHhcCcEEe---CC-CCceeeccEEEEEeCCCC
Confidence 3 3333221 112334433 5799999999999877 999999998653222 11 111223467899999975
Q ss_pred -------CCCCccccCceE--EEEcCCCCH--HHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHH
Q 003349 467 -------QPIPPPLLDRME--VIELPGYTP--EEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRN 535 (828)
Q Consensus 467 -------~~l~~aLl~R~~--~i~~~~~~~--ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~ 535 (828)
..+.+.|..|+. .|.+|++.. ++...++..++. +.....+. ....++++++..+.. |.+..++|.
T Consensus 283 l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~-~~~~~~~~--~~~~~~~~a~~~l~~-~~wpGNvre 358 (387)
T 1ny5_A 283 IKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLK-KFSRKYAK--EVEGFTKSAQELLLS-YPWYGNVRE 358 (387)
T ss_dssp HHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHH-HHHHHTTC--CCCEECHHHHHHHHH-SCCTTHHHH
T ss_pred HHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHH-HHHHHcCC--CCCCCCHHHHHHHHh-CCCCcHHHH
Confidence 478899999986 478888765 666666666553 33333332 234689999988765 788888999
Q ss_pred HHHHHHHHH
Q 003349 536 LERNLAALA 544 (828)
Q Consensus 536 l~~~i~~l~ 544 (828)
|++.|+..+
T Consensus 359 L~~~i~~~~ 367 (387)
T 1ny5_A 359 LKNVIERAV 367 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888876
No 90
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=2.8e-12 Score=137.68 Aligned_cols=143 Identities=14% Similarity=0.170 Sum_probs=101.0
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh------CCCeEEEecCCcCchhhhccCccccc
Q 003349 317 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL------GRKFIRISLGGVKDEADIRGHRRTYI 390 (828)
Q Consensus 317 G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l------~~~~~~i~~~~~~~~~~l~g~~~~~v 390 (828)
||+++.+.+...+... . .+++||+||||+|||++|+++|+.+ ...+..++.++. ..
T Consensus 1 g~~~~~~~L~~~i~~~-----~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~------------~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE------------NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC-----S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS------------CB
T ss_pred ChHHHHHHHHHHHHCC-----C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC------------CC
Confidence 6777888887776532 2 5689999999999999999999864 234444443220 01
Q ss_pred ccC-cchHHHHHHhcCCC--CcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC
Q 003349 391 GSM-PGRLIDGLKRVGVC--NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ 467 (828)
Q Consensus 391 g~~-~g~l~~~~~~~~~~--~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~ 467 (828)
+.. -..+.+.+...+.. ..|+||||+|.+.... +++|++.|++. ..+++||++||.+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a----~naLLk~LEep---------------~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQA----ANAFLKALEEP---------------PEYAVIVLNTRRWH 123 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHH----HHHTHHHHHSC---------------CTTEEEEEEESCGG
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHH----HHHHHHHHhCC---------------CCCeEEEEEECChH
Confidence 100 01233333333322 3499999999998765 89999999753 34678888888899
Q ss_pred CCCccccCceEEEEcCCCCHHHHHHHHHHhh
Q 003349 468 PIPPPLLDRMEVIELPGYTPEEKLRIAMRHL 498 (828)
Q Consensus 468 ~l~~aLl~R~~~i~~~~~~~ee~~~Il~~~l 498 (828)
.+.+++++| ++.|++++.++..++++..+
T Consensus 124 kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 124 YLLPTIKSR--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GSCHHHHTT--SEEEECCCCHHHHHHHHHHH
T ss_pred hChHHHHce--eEeCCCCCHHHHHHHHHHHh
Confidence 999999999 99999999999999887763
No 91
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.31 E-value=2.8e-13 Score=128.97 Aligned_cols=131 Identities=12% Similarity=0.167 Sum_probs=92.6
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccC
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM 393 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~ 393 (828)
+++|++.+++.+.+.+..... .+.+++|+||||||||++|++++.... +++.++++..... +
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~---------~---- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID---------M---- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH---------C----
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH---------h----
Confidence 467888888888887765432 345699999999999999999998877 7777776653221 0
Q ss_pred cchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-CC----
Q 003349 394 PGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-QP---- 468 (828)
Q Consensus 394 ~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-~~---- 468 (828)
....+..+. ++++||||+|.+.++. +..|+++|+... ..++.+|+|||.. ..
T Consensus 67 ---~~~~~~~a~--~~~l~lDei~~l~~~~----q~~Ll~~l~~~~--------------~~~~~iI~~tn~~~~~~~~~ 123 (143)
T 3co5_A 67 ---PMELLQKAE--GGVLYVGDIAQYSRNI----QTGITFIIGKAE--------------RCRVRVIASCSYAAGSDGIS 123 (143)
T ss_dssp ---HHHHHHHTT--TSEEEEEECTTCCHHH----HHHHHHHHHHHT--------------TTTCEEEEEEEECTTTC--C
T ss_pred ---hhhHHHhCC--CCeEEEeChHHCCHHH----HHHHHHHHHhCC--------------CCCEEEEEecCCCHHHHHhC
Confidence 233444443 5699999999998766 888999987532 2356789998865 22
Q ss_pred CCccccCceE--EEEcCCC
Q 003349 469 IPPPLLDRME--VIELPGY 485 (828)
Q Consensus 469 l~~aLl~R~~--~i~~~~~ 485 (828)
+++.|.+||. .|.+|++
T Consensus 124 ~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 124 CEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp HHHHHHHHSSSEEEEECCC
T ss_pred ccHHHHHHhcCcEEeCCCC
Confidence 5566777874 5778775
No 92
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=1.1e-11 Score=137.29 Aligned_cols=191 Identities=19% Similarity=0.215 Sum_probs=123.8
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh------CCCeEEEecCCcCchhhhcc--
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL------GRKFIRISLGGVKDEADIRG-- 384 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l------~~~~~~i~~~~~~~~~~l~g-- 384 (828)
.+++|.++.++.+...+..... ...+..++|+||||||||++++++++.+ +..++.+++....+...+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 4688999998888876653221 2456689999999999999999999988 67777887654333222111
Q ss_pred -----CcccccccCcchHH----HHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCC
Q 003349 385 -----HRRTYIGSMPGRLI----DGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 455 (828)
Q Consensus 385 -----~~~~~vg~~~g~l~----~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~ 455 (828)
......|.....+. ..+.. ...+.+++|||++.+......+.+..|+..++.. ...
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~--------------~~~ 162 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRD-YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV--------------NKS 162 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHT-CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC--------------CC-
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc--------------CCC
Confidence 11011122222222 22222 1124599999999987432223355666655321 123
Q ss_pred CcEEEEecCCC---CCCCccccCce--EEEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhh
Q 003349 456 KVIFVATANRA---QPIPPPLLDRM--EVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT 528 (828)
Q Consensus 456 ~viiI~TtN~~---~~l~~aLl~R~--~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~ 528 (828)
++.+|+++|.. ..+++.+.+|| ..+.|++++.++..+++...+.. .. ....++++++..++....
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~----~~----~~~~~~~~~~~~l~~~~~ 232 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM----AF----KPGVLPDNVIKLCAALAA 232 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH----HB----CSSCSCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh----hc----cCCCCCHHHHHHHHHHHH
Confidence 56888888876 46888999999 58999999999999999886521 11 124688999988887544
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.24 E-value=1.4e-11 Score=136.21 Aligned_cols=198 Identities=14% Similarity=0.126 Sum_probs=116.7
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHH-HHHhCCCeEEEecCCcCchhhh
Q 003349 304 LKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSI-ASALGRKFIRISLGGVKDEADI 382 (828)
Q Consensus 304 l~~~~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~l-a~~l~~~~~~i~~~~~~~~~~l 382 (828)
+..+...+.. ++|++.+|..+.-.+...... .....++||.|+||| ||++|+++ ++.+.+..+. ...+ .+...+
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft-~g~~-ss~~gL 279 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLFSCVGK-NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYV-DLRR-TELTDL 279 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEE-EGGG-CCHHHH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc-cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEe-cCCC-CCccCc
Confidence 3456667788 999999988776555321100 112238999999999 99999999 7776543322 2111 111222
Q ss_pred ccCc---ccccccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEE
Q 003349 383 RGHR---RTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIF 459 (828)
Q Consensus 383 ~g~~---~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~vii 459 (828)
.+.. .+ ....+|.+. .+ .++++|+|||+++.++. +++|++.|++++.... |.++ ..++.|
T Consensus 280 t~s~r~~tG-~~~~~G~l~----LA--dgGvl~lDEIn~~~~~~----qsaLlEaMEe~~VtI~-----G~~l-parf~V 342 (506)
T 3f8t_A 280 TAVLKEDRG-WALRAGAAV----LA--DGGILAVDHLEGAPEPH----RWALMEAMDKGTVTVD-----GIAL-NARCAV 342 (506)
T ss_dssp SEEEEESSS-EEEEECHHH----HT--TTSEEEEECCTTCCHHH----HHHHHHHHHHSEEEET-----TEEE-ECCCEE
T ss_pred eEEEEcCCC-cccCCCeeE----Ec--CCCeeehHhhhhCCHHH----HHHHHHHHhCCcEEEC-----CEEc-CCCeEE
Confidence 2210 01 111233322 22 25799999999998877 8999999997654322 2333 457899
Q ss_pred EEecCCCC-----------CCCccccCceEE-E-EcCCCCHHHHH---------HHHHHhhcHHHHHhcCCCCcccccCH
Q 003349 460 VATANRAQ-----------PIPPPLLDRMEV-I-ELPGYTPEEKL---------RIAMRHLIPRVLDQHGLGSEFLQIPE 517 (828)
Q Consensus 460 I~TtN~~~-----------~l~~aLl~R~~~-i-~~~~~~~ee~~---------~Il~~~l~~~~~~~~~~~~~~~~i~~ 517 (828)
|+|+|+.. .|+++++|||+. + .++.++.++-. +.++.++. ..+.. ...+.+++
T Consensus 343 IAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~--~ar~~---~~~p~ls~ 417 (506)
T 3f8t_A 343 LAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL--YAIRE---HPAPELTE 417 (506)
T ss_dssp EEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHH--HHHHH---CSCCEECH
T ss_pred EEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH--HHHhc---CCCceeCH
Confidence 99999975 899999999973 3 34444433211 11222211 00101 12478999
Q ss_pred HHHHHHHHHhh
Q 003349 518 AMVKLVIQRYT 528 (828)
Q Consensus 518 ~~l~~l~~~~~ 528 (828)
++.+++++.|.
T Consensus 418 ea~~yI~~~y~ 428 (506)
T 3f8t_A 418 EARKRLEHWYE 428 (506)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887443
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.21 E-value=2.1e-11 Score=161.12 Aligned_cols=200 Identities=17% Similarity=0.168 Sum_probs=122.0
Q ss_pred CCeEEEEcCCCCchhHHHHH-HHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhc-CCCCcEEEEeccc
Q 003349 340 GPVLCFVGPPGVGKTSLASS-IASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV-GVCNPVMLLDEID 417 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~-la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~-~~~~~vl~iDEid 417 (828)
+.++||+||||||||++|+. +++..+..+..++++..++...+.+....+.......-...+... .....|+||||++
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 46899999999999999954 444445677788888776544332111000000000000000000 1123499999999
Q ss_pred ccCCCCCC--ChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC-----CCCccccCceEEEEcCCCCHHHH
Q 003349 418 KTGSDVRG--DPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ-----PIPPPLLDRMEVIELPGYTPEEK 490 (828)
Q Consensus 418 ~l~~~~~~--~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~-----~l~~aLl~R~~~i~~~~~~~ee~ 490 (828)
....+..| .+...|.+.||. +++.+...+......++.+|+|||++. .++++|+|||.+|.++.|+.+++
T Consensus 1347 mp~~d~yg~q~~lelLRq~le~---gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l 1423 (2695)
T 4akg_A 1347 LPKLDKYGSQNVVLFLRQLMEK---QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSL 1423 (2695)
T ss_dssp CSCCCSSSCCHHHHHHHHHHHT---SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHH
T ss_pred cccccccCchhHHHHHHHHHhc---CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHH
Confidence 87666533 246777788763 233332223334457899999999984 89999999999999999999999
Q ss_pred HHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhh-------------hhhchHHHHHHHHHHHHH
Q 003349 491 LRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT-------------REAGVRNLERNLAALARA 546 (828)
Q Consensus 491 ~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~-------------~~~g~R~l~~~i~~l~~~ 546 (828)
..|+..++.... . ....-..+.+..+...++-|. .-.+.|+|-+.++.++..
T Consensus 1424 ~~I~~~il~~~l-~---~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~ 1488 (2695)
T 4akg_A 1424 SQIYEIYYKAIF-K---LVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTA 1488 (2695)
T ss_dssp HHHHHHHHHHHT-T---SSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-c---cCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhc
Confidence 999988864321 1 111111233333333333221 146789999988888764
No 95
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=99.07 E-value=3e-10 Score=104.80 Aligned_cols=59 Identities=31% Similarity=0.452 Sum_probs=53.2
Q ss_pred CCCCCccccccceeEEEEEEeccCccCCCCceEEEEEEEEeeEEEEeeecccCCeEEEEEEEec
Q 003349 37 KNQQEVIHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGTYYTARISSLE 100 (828)
Q Consensus 37 ~~~~~~~~l~~vGt~a~I~~~~~~~~~~dG~~~~~I~~~G~~RfrI~~~~~~~~y~~a~Ve~l~ 100 (828)
.++++.+++|+|||+|+|.++.++ ||| ++.|+++|.+||||.++.+.+||+.|+|++++
T Consensus 67 ~~~p~~~dl~~vGt~a~I~~~~~l---pdG--~~~ilv~G~~R~rI~~~~~~~~~~~a~V~~l~ 125 (125)
T 2ane_A 67 TDEPGVNDLFTVGTVASILQMLKL---PDG--TVKVLVEGLQRARISALSDNGEHFSAKAEYLE 125 (125)
T ss_dssp CSSCCGGGBCSEEEEEEEEEEEEC---TTS--CEEEEEEEEEEEEEEEEEECSSSEEEEEEEC-
T ss_pred ccCCCccchhccEEEEEEEEEeeC---CCC--cEEEEEEEEEEEEEEEEEcCCCcEEEEEEECC
Confidence 334567889999999999999999 999 89999999999999999888999999999874
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.91 E-value=7.4e-10 Score=147.13 Aligned_cols=197 Identities=16% Similarity=0.156 Sum_probs=125.2
Q ss_pred CCCeEEEEcCCCCchhHHHHH-HHHHhCCCeEEEecCCcCchhhhccCcccccccCc----chHHHHHHhcC--CCCcEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASS-IASALGRKFIRISLGGVKDEADIRGHRRTYIGSMP----GRLIDGLKRVG--VCNPVM 411 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~-la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~----g~l~~~~~~~~--~~~~vl 411 (828)
.+.++||+||||||||+++.. +++..+.++..++++..++...+.+....+..... |.+ .... ....|+
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~----~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETV----LRPTQLGKWLVV 1378 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEE----EEESSTTCEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcc----cCCCcCCceEEE
Confidence 345689999999999987755 44443556778999988776555432111100000 100 0011 112389
Q ss_pred EEecccccCCCCCCC--hHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-----CCCCccccCceEEEEcCC
Q 003349 412 LLDEIDKTGSDVRGD--PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-----QPIPPPLLDRMEVIELPG 484 (828)
Q Consensus 412 ~iDEid~l~~~~~~~--~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-----~~l~~aLl~R~~~i~~~~ 484 (828)
|+||++...++..|. +...|.++||.+ ++.+..........++.||+|+|++ ..++++|+|||.++.++.
T Consensus 1379 FiDDiNmp~~D~yGtQ~~ielLrqlld~~---g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ 1455 (3245)
T 3vkg_A 1379 FCDEINLPSTDKYGTQRVITFIRQMVEKG---GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDF 1455 (3245)
T ss_dssp EETTTTCCCCCTTSCCHHHHHHHHHHHHS---EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCC
T ss_pred EecccCCCCccccccccHHHHHHHHHHcC---CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCC
Confidence 999999988776554 577888888843 3444332334456789999999987 379999999999999999
Q ss_pred CCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhh-------------hhhchHHHHHHHHHHHHH
Q 003349 485 YTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYT-------------REAGVRNLERNLAALARA 546 (828)
Q Consensus 485 ~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~-------------~~~g~R~l~~~i~~l~~~ 546 (828)
|+.+.+..|+...+.. .+. ....-..+.+..+...++-|. ..++.|+|-+.++.+++.
T Consensus 1456 ps~esL~~If~til~~-~l~---~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1456 PSTSSLTQIYGTFNRA-LMK---LLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp CCHHHHHHHHHHHHHH-HTT---SCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-HHh---hChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh
Confidence 9999999998765432 111 111111223444444443221 135889999999988864
No 97
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.91 E-value=2.6e-09 Score=119.46 Aligned_cols=195 Identities=17% Similarity=0.135 Sum_probs=114.5
Q ss_pred ccccchHHHHHHHHHHH-HHhhhCCCCCCCeEEE--EcCCCCchhHHHHHHHHHhC---------CCeEEEecCCcCchh
Q 003349 313 SDHYGLVRVKQRIIEYL-AVRKLKPDARGPVLCF--VGPPGVGKTSLASSIASALG---------RKFIRISLGGVKDEA 380 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l-~~~~~~~~~~~~~lLL--~GppGtGKT~la~~la~~l~---------~~~~~i~~~~~~~~~ 380 (828)
..++|.++.++.+...+ ..........+.++++ +||||+|||++++.+++.+. ..+..+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 46889998888888877 5432211123457888 99999999999999998763 345566654433332
Q ss_pred hhc-------cCcccccccCcch----HHHHHHhcCCCCcEEEEecccccCCCCCC--ChHHHHHHhcCccccccccccc
Q 003349 381 DIR-------GHRRTYIGSMPGR----LIDGLKRVGVCNPVMLLDEIDKTGSDVRG--DPASALLEVLDPEQNKTFNDHY 447 (828)
Q Consensus 381 ~l~-------g~~~~~vg~~~g~----l~~~~~~~~~~~~vl~iDEid~l~~~~~~--~~~~~Ll~~ld~~~~~~~~~~~ 447 (828)
.+. +......|..... +...+.. ...+.+|+|||++.+....+. +.+..|+..++..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~--------- 171 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYV-ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI--------- 171 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH-HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS---------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc---------
Confidence 221 1110001111122 2223321 112348999999998653111 1123333333211
Q ss_pred CCeeecC--CCcEEEEecCCCC---CCC---ccccCceE-EEEcCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHH
Q 003349 448 LNVPFDL--SKVIFVATANRAQ---PIP---PPLLDRME-VIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEA 518 (828)
Q Consensus 448 ~~~~~~~--~~viiI~TtN~~~---~l~---~aLl~R~~-~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~ 518 (828)
+.+. .++.+|+|+|.++ .++ +.+.+||. .+.|++++.++..+++...+... +. ...++++
T Consensus 172 ---~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~-----~~---~~~~~~~ 240 (412)
T 1w5s_A 172 ---PSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG-----LR---DTVWEPR 240 (412)
T ss_dssp ---CCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH-----BC---TTSCCHH
T ss_pred ---ccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc-----CC---CCCCChH
Confidence 0011 4578888887654 344 66777774 49999999999999998765311 11 1357888
Q ss_pred HHHHHHHHhh
Q 003349 519 MVKLVIQRYT 528 (828)
Q Consensus 519 ~l~~l~~~~~ 528 (828)
++..+.+.+.
T Consensus 241 ~~~~i~~~~~ 250 (412)
T 1w5s_A 241 HLELISDVYG 250 (412)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 8888887655
No 98
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.71 E-value=1.4e-08 Score=96.86 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDE 415 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDE 415 (828)
++..++|+||+|+|||+|+++++..+ +.....++....... .+.. ...+++|||
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------------~~~~---~~~lLilDE 91 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------------DAAF---EAEYLAVDQ 91 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------------GGGG---GCSEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------------HHHh---CCCEEEEeC
Confidence 57789999999999999999999988 444555554332211 0111 246999999
Q ss_pred ccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecC-CCCCCC--ccccCceE
Q 003349 416 IDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATAN-RAQPIP--PPLLDRME 478 (828)
Q Consensus 416 id~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN-~~~~l~--~aLl~R~~ 478 (828)
++.+.... +..|+++++..... ...++|+|+| .+..+. +.|.+||.
T Consensus 92 ~~~~~~~~----~~~l~~li~~~~~~-------------g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 92 VEKLGNEE----QALLFSIFNRFRNS-------------GKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp TTCCCSHH----HHHHHHHHHHHHHH-------------TCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred ccccChHH----HHHHHHHHHHHHHc-------------CCcEEEEECCCCHHHccccHHHHHHHh
Confidence 99866543 67788887643211 1222555666 444232 88999984
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.71 E-value=4.7e-08 Score=129.61 Aligned_cols=133 Identities=18% Similarity=0.221 Sum_probs=95.5
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTG 420 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~ 420 (828)
.+.++.||||||||++++.+|+.+|.++++++|+...+...+ ++ .|..+...+..++|||++++.
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~l------------g~---~~~g~~~~Gaw~~~DE~nr~~ 710 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVL------------SR---LLVGITQIGAWGCFDEFNRLD 710 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHH------------HH---HHHHHHHHTCEEEEETTTSSC
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHh------------hH---HHHHHHhcCCEeeehhhhhcC
Confidence 467899999999999999999999999999999987765443 22 222222224699999999998
Q ss_pred CCCCCChHHHHHHhcC-------cccccccccccCCeeec-CCCcEEEEecCCCC----CCCccccCceEEEEcCCCCHH
Q 003349 421 SDVRGDPASALLEVLD-------PEQNKTFNDHYLNVPFD-LSKVIFVATANRAQ----PIPPPLLDRMEVIELPGYTPE 488 (828)
Q Consensus 421 ~~~~~~~~~~Ll~~ld-------~~~~~~~~~~~~~~~~~-~~~viiI~TtN~~~----~l~~aLl~R~~~i~~~~~~~e 488 (828)
++. .+.+.+.++ ..+. .+. ..|..+. ..++.+++|+|+.. .++++|++||..+.+..|+.+
T Consensus 711 ~ev----Ls~l~~~l~~i~~al~~~~~-~i~--~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~ 783 (2695)
T 4akg_A 711 EKV----LSAVSANIQQIQNGLQVGKS-HIT--LLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSG 783 (2695)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHTCS-EEE--CSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHH
T ss_pred hHH----HHHHHHHHHHHHHHHHcCCc-EEe--eCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHH
Confidence 765 555533322 1111 111 1122232 34678899999753 799999999999999999998
Q ss_pred HHHHHHH
Q 003349 489 EKLRIAM 495 (828)
Q Consensus 489 e~~~Il~ 495 (828)
...+|+.
T Consensus 784 ~i~ei~l 790 (2695)
T 4akg_A 784 TIAEMIL 790 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888753
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.66 E-value=1.8e-08 Score=99.29 Aligned_cols=123 Identities=20% Similarity=0.201 Sum_probs=69.8
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh----CCCeEEEecCCcCchhhhccCccccccc
Q 003349 317 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLGGVKDEADIRGHRRTYIGS 392 (828)
Q Consensus 317 G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l----~~~~~~i~~~~~~~~~~l~g~~~~~vg~ 392 (828)
++..+.+.+.+++..... ..+.+++|+||||||||||+++++..+ +.....+++..... .+.. .+...
T Consensus 18 ~~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~--~~~~---~~~~~ 89 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF--RLKH---LMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH--HHHH---HHHHT
T ss_pred HHHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--HHHH---HhcCc
Confidence 355666666666543222 347789999999999999999999887 44444454433211 1110 00001
Q ss_pred CcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC
Q 003349 393 MPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ 467 (828)
Q Consensus 393 ~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~ 467 (828)
....+...+. ...+++|||++....+. .....|+++++.... .+..+|+|||.+.
T Consensus 90 ~~~~~~~~~~----~~~llilDE~~~~~~~~--~~~~~l~~ll~~~~~--------------~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 90 KDTKFLKTVL----NSPVLVLDDLGSERLSD--WQRELISYIITYRYN--------------NLKSTIITTNYSL 144 (180)
T ss_dssp CCSHHHHHHH----TCSEEEEETCSSSCCCH--HHHHHHHHHHHHHHH--------------TTCEEEEECCCCS
T ss_pred hHHHHHHHhc----CCCEEEEeCCCCCcCCH--HHHHHHHHHHHHHHH--------------cCCCEEEEcCCCh
Confidence 1112233333 24699999998543221 114567777764321 2346788888764
No 101
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.60 E-value=4.7e-08 Score=96.84 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcch
Q 003349 317 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGR 396 (828)
Q Consensus 317 G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~ 396 (828)
........+..++.. .++..+++|+||||||||++|.++|+.+.... +.+..-.+ .+
T Consensus 40 ~~~~f~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i--~~fans~s---------~f------- 96 (212)
T 1tue_A 40 EFITFLGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV--ISFVNSTS---------HF------- 96 (212)
T ss_dssp CHHHHHHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE--CCCCCSSS---------CG-------
T ss_pred CHHHHHHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHHhCCCe--eeEEeccc---------hh-------
Confidence 333444555555431 23345799999999999999999999985322 22111000 00
Q ss_pred HHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC---CCCCccc
Q 003349 397 LIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA---QPIPPPL 473 (828)
Q Consensus 397 l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~---~~l~~aL 473 (828)
. +.... ...+++|||++...... ....+..+||+.. .-.|.....+......-+|.|||.. +.--+.|
T Consensus 97 ~---l~~l~-~~kIiiLDEad~~~~~~---~d~~lrn~ldG~~--~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L 167 (212)
T 1tue_A 97 W---LEPLT-DTKVAMLDDATTTCWTY---FDTYMRNALDGNP--ISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYL 167 (212)
T ss_dssp G---GGGGT-TCSSEEEEEECHHHHHH---HHHHCHHHHHTCC--EEEC----CCEEECCCCEEEEESSCTTSSSSCHHH
T ss_pred h---hcccC-CCCEEEEECCCchhHHH---HHHHHHHHhCCCc--ccHHHhhcCccccCCCCEEEecCCCcccccchhhh
Confidence 0 11111 13499999998542110 0123444555321 0011111111112234688899974 2333678
Q ss_pred cCceEEEEcCCC
Q 003349 474 LDRMEVIELPGY 485 (828)
Q Consensus 474 l~R~~~i~~~~~ 485 (828)
.||+..+.|+.+
T Consensus 168 ~SRi~~f~F~~~ 179 (212)
T 1tue_A 168 ESRITVFEFPNA 179 (212)
T ss_dssp HTSCEEEECCSC
T ss_pred hhhEEEEEcCCC
Confidence 899998888844
No 102
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.59 E-value=1.4e-07 Score=97.81 Aligned_cols=127 Identities=20% Similarity=0.219 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 418 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~ 418 (828)
+...++|+||||||||++|.+||+.++. .+.++.+.. .+ .+.... ...+++.||...
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~-----------~f----------~l~~~~-~k~i~l~Ee~~~ 159 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNE-----------NF----------PFNDCV-DKMVIWWEEGKM 159 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCS-----------SC----------TTGGGS-SCSEEEECSCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecccc-----------cc----------cccccc-ccEEEEeccccc
Confidence 3457999999999999999999998654 344433211 11 011111 123666666655
Q ss_pred cCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC-----------CCCCccccCceEEEEcC----
Q 003349 419 TGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA-----------QPIPPPLLDRMEVIELP---- 483 (828)
Q Consensus 419 l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~-----------~~l~~aLl~R~~~i~~~---- 483 (828)
.. +. +..+-.+++.... . .+.....+.......+|+|||.. +...++|.+|+.+|.|+
T Consensus 160 ~~-d~----~~~lr~i~~G~~~-~-id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p 232 (267)
T 1u0j_A 160 TA-KV----VESAKAILGGSKV-R-VDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLD 232 (267)
T ss_dssp ET-TT----HHHHHHHHTTCCE-E-C------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCC
T ss_pred hh-HH----HHHHHHHhCCCcE-E-EecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCC
Confidence 43 33 6777777764321 1 12111222234566788899872 24568899999999998
Q ss_pred ----CCCHHHHHHHHH
Q 003349 484 ----GYTPEEKLRIAM 495 (828)
Q Consensus 484 ----~~~~ee~~~Il~ 495 (828)
+++.++....++
T Consensus 233 ~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 233 HDFGKVTKQEVKDFFR 248 (267)
T ss_dssp TTSCCCCHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHH
Confidence 788888887776
No 103
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.49 E-value=5.1e-07 Score=98.46 Aligned_cols=160 Identities=10% Similarity=0.083 Sum_probs=109.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC---C-CeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCC--CCcEEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG---R-KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGV--CNPVML 412 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~---~-~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~--~~~vl~ 412 (828)
..+.+||+||+|+||++.++.+++.+. . ++..+.+++.. ....+.+.....+. ...|++
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~plf~~~kvvi 81 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNT---------------DWNAIFSLCQAMSLFASRQTLL 81 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTC---------------CHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCC---------------CHHHHHHHhcCcCCccCCeEEE
Confidence 456899999999999999999998762 1 22223322211 11233333333221 234999
Q ss_pred Eecccc-cCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC------CCCCccccCceEEEEcCCC
Q 003349 413 LDEIDK-TGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------QPIPPPLLDRMEVIELPGY 485 (828)
Q Consensus 413 iDEid~-l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~------~~l~~aLl~R~~~i~~~~~ 485 (828)
|||++. +..+. +++|+..++.. ..+++||.+++.. ..+.+++.+|+.++.|.++
T Consensus 82 i~~~~~kl~~~~----~~aLl~~le~p---------------~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 82 LLLPENGPNAAI----NEQLLTLTGLL---------------HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp EECCSSCCCTTH----HHHHHHHHTTC---------------BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred EECCCCCCChHH----HHHHHHHHhcC---------------CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 999998 76554 89999999742 2245566555543 3567889999999999999
Q ss_pred CHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 003349 486 TPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALA 544 (828)
Q Consensus 486 ~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~ 544 (828)
+..+....++..+. ..++.++++++..+++.+. .+.|.+...++.++
T Consensus 143 ~~~~l~~~l~~~~~----------~~g~~i~~~a~~~l~~~~~--gdl~~~~~elekl~ 189 (343)
T 1jr3_D 143 EQAQLPRWVAARAK----------QLNLELDDAANQVLCYCYE--GNLLALAQALERLS 189 (343)
T ss_dssp CTTHHHHHHHHHHH----------HTTCEECHHHHHHHHHSST--TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHhc--hHHHHHHHHHHHHH
Confidence 99999888877652 2347899999999998654 35667767777665
No 104
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.44 E-value=1.3e-06 Score=94.96 Aligned_cols=180 Identities=14% Similarity=0.166 Sum_probs=102.2
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcC------chhhhcc---
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVK------DEADIRG--- 384 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~------~~~~l~g--- 384 (828)
.++|.+...+.+...+.. +..++++||+|+|||++++.+++..+ ...+++.+.. +...+..
T Consensus 13 ~~~gR~~el~~L~~~l~~--------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN--------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQ 82 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhc--------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHH
Confidence 478999888888877652 26899999999999999999998874 5566654321 1111100
Q ss_pred ----C-----------------cccccccCcchHHHHHHhcC--CCCcEEEEecccccCC---CCCCChHHHHHHhcCcc
Q 003349 385 ----H-----------------RRTYIGSMPGRLIDGLKRVG--VCNPVMLLDEIDKTGS---DVRGDPASALLEVLDPE 438 (828)
Q Consensus 385 ----~-----------------~~~~vg~~~g~l~~~~~~~~--~~~~vl~iDEid~l~~---~~~~~~~~~Ll~~ld~~ 438 (828)
. ...........+.+.+.... ..+.+++|||++.+.. ....+....|..+++.
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~- 161 (350)
T 2qen_A 83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS- 161 (350)
T ss_dssp HHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-
Confidence 0 00000011112233332211 0145899999999864 1100012222222221
Q ss_pred cccccccccCCeeecCCCcEEEEecCCC---------CCCCccccCce-EEEEcCCCCHHHHHHHHHHhhcHHHHHhcCC
Q 003349 439 QNKTFNDHYLNVPFDLSKVIFVATANRA---------QPIPPPLLDRM-EVIELPGYTPEEKLRIAMRHLIPRVLDQHGL 508 (828)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~viiI~TtN~~---------~~l~~aLl~R~-~~i~~~~~~~ee~~~Il~~~l~~~~~~~~~~ 508 (828)
..++.+|+|+... .....++..|+ ..+.+++++.++..+++...+. ..
T Consensus 162 ---------------~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~-----~~-- 219 (350)
T 2qen_A 162 ---------------LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR-----EV-- 219 (350)
T ss_dssp ---------------CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH-----TT--
T ss_pred ---------------cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH-----Hc--
Confidence 1245666665432 12344566666 4899999999999988876531 11
Q ss_pred CCcccccCHHHHHHHHHHhhh
Q 003349 509 GSEFLQIPEAMVKLVIQRYTR 529 (828)
Q Consensus 509 ~~~~~~i~~~~l~~l~~~~~~ 529 (828)
+..++++.+..+...+.+
T Consensus 220 ---~~~~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 220 ---NLDVPENEIEEAVELLDG 237 (350)
T ss_dssp ---TCCCCHHHHHHHHHHHTT
T ss_pred ---CCCCCHHHHHHHHHHhCC
Confidence 234677777776665443
No 105
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.44 E-value=1.1e-06 Score=95.82 Aligned_cols=159 Identities=19% Similarity=0.251 Sum_probs=94.7
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc-----Cchhhhc-----
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV-----KDEADIR----- 383 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~-----~~~~~l~----- 383 (828)
.++|.++..+.+.. +. . +.++++||+|+|||+|++.+++.++.....+++.+. .+.....
T Consensus 14 ~~~gR~~el~~L~~-l~-------~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LR-------A--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp GSCCCHHHHHHHHH-TC-------S--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred HhcChHHHHHHHHH-hc-------C--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHH
Confidence 47888887777766 42 1 589999999999999999999988777777777643 1111100
Q ss_pred --------------------cCccccc----------ccCcchHHHHHHhcCCCCcEEEEecccccCCCCCCChHHHHHH
Q 003349 384 --------------------GHRRTYI----------GSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLE 433 (828)
Q Consensus 384 --------------------g~~~~~v----------g~~~g~l~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~Ll~ 433 (828)
+...... ......+.+.+......+.+++|||++.+......+....|..
T Consensus 84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~ 163 (357)
T 2fna_A 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAY 163 (357)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHH
T ss_pred HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHH
Confidence 0000000 0011223444444321245899999999864211111344433
Q ss_pred hcCcccccccccccCCeeecCCCcEEEEecCCCC---------CCCccccCce-EEEEcCCCCHHHHHHHHHHhh
Q 003349 434 VLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ---------PIPPPLLDRM-EVIELPGYTPEEKLRIAMRHL 498 (828)
Q Consensus 434 ~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~---------~l~~aLl~R~-~~i~~~~~~~ee~~~Il~~~l 498 (828)
+++. ..++.+|+|++... ....++..|+ ..+.+++++.++..+++...+
T Consensus 164 ~~~~----------------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 164 AYDN----------------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp HHHH----------------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred HHHc----------------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence 3331 12455666665431 2334566676 689999999999999887754
No 106
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.39 E-value=4.4e-07 Score=90.83 Aligned_cols=71 Identities=24% Similarity=0.358 Sum_probs=43.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEeccc
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEID 417 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid 417 (828)
.+++|+||||||||++|+++++.+ +.++..+++..... .+... +.......+...+.. ..+|+|||++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~----~~~lilDei~ 125 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR--ELKHS---LQDQTMNEKLDYIKK----VPVLMLDDLG 125 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH--HHHHC------CCCHHHHHHHHH----SSEEEEEEEC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH--HHHHH---hccchHHHHHHHhcC----CCEEEEcCCC
Confidence 689999999999999999999988 45566666543211 11110 100111223333333 3599999997
Q ss_pred ccC
Q 003349 418 KTG 420 (828)
Q Consensus 418 ~l~ 420 (828)
...
T Consensus 126 ~~~ 128 (202)
T 2w58_A 126 AEA 128 (202)
T ss_dssp CC-
T ss_pred CCc
Confidence 754
No 107
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.33 E-value=1.2e-06 Score=87.59 Aligned_cols=131 Identities=14% Similarity=0.173 Sum_probs=74.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh--------C-CCeEEEecCCcCchhhhccC-ccccccc-----CcchHHHHHHhcC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL--------G-RKFIRISLGGVKDEADIRGH-RRTYIGS-----MPGRLIDGLKRVG 405 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l--------~-~~~~~i~~~~~~~~~~l~g~-~~~~vg~-----~~g~l~~~~~~~~ 405 (828)
...|++|+||+|||++|.++.... | ++.+..++.+.......... ...+... ....+.+.+....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 478899999999999998865442 3 55655666654321110000 0011111 1123333221122
Q ss_pred CCCcEEEEecccccCCCC-CCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCccccCceE-EEEcC
Q 003349 406 VCNPVMLLDEIDKTGSDV-RGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRME-VIELP 483 (828)
Q Consensus 406 ~~~~vl~iDEid~l~~~~-~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl~R~~-~i~~~ 483 (828)
..+.||+|||++.+.+.. ..-....++..|+... ....-+|++++++..++.++++|++ .+++.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r--------------~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~ 151 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR--------------HQGIDIFVLTQGPKLLDQNLRTLVRKHYHIA 151 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT--------------TTTCEEEEEESCGGGBCHHHHTTEEEEEEEE
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcC--------------cCCeEEEEECCCHHHHhHHHHHHhheEEEEc
Confidence 236699999999985433 1111123455444211 1234677788889999999999997 46666
Q ss_pred CC
Q 003349 484 GY 485 (828)
Q Consensus 484 ~~ 485 (828)
++
T Consensus 152 ~~ 153 (199)
T 2r2a_A 152 SN 153 (199)
T ss_dssp EC
T ss_pred Cc
Confidence 53
No 108
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.32 E-value=2.4e-07 Score=99.42 Aligned_cols=90 Identities=24% Similarity=0.403 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC----CCeEEEecCCcCchhhhccCcccccccCc
Q 003349 319 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG----RKFIRISLGGVKDEADIRGHRRTYIGSMP 394 (828)
Q Consensus 319 ~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~----~~~~~i~~~~~~~~~~l~g~~~~~vg~~~ 394 (828)
..+.+.+..++... +...+.+++|+||||||||+||+++|..+. .++..+++.... ..+..... -|..
T Consensus 134 ~~~~~~~~~~i~~~---~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~--~~l~~~~~--~~~~- 205 (308)
T 2qgz_A 134 MEAFSAILDFVEQY---PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA--IDVKNAIS--NGSV- 205 (308)
T ss_dssp HHHHHHHHHHHHHC---SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH--HHHHCCCC-------
T ss_pred HHHHHHHHHHHHhc---cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH--HHHHHHhc--cchH-
Confidence 33444444555422 112357899999999999999999998764 455555554321 11211110 0111
Q ss_pred chHHHHHHhcCCCCcEEEEecccccC
Q 003349 395 GRLIDGLKRVGVCNPVMLLDEIDKTG 420 (828)
Q Consensus 395 g~l~~~~~~~~~~~~vl~iDEid~l~ 420 (828)
..+...+.. .++|||||++...
T Consensus 206 ~~~~~~~~~----~~lLiiDdig~~~ 227 (308)
T 2qgz_A 206 KEEIDAVKN----VPVLILDDIGAEQ 227 (308)
T ss_dssp CCTTHHHHT----SSEEEEETCCC--
T ss_pred HHHHHHhcC----CCEEEEcCCCCCC
Confidence 112223332 3599999997654
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.31 E-value=3.1e-06 Score=113.14 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=93.6
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccCcchHHHHHHhcCCCCcEEEEecccccCC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGS 421 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~~g~l~~~~~~~~~~~~vl~iDEid~l~~ 421 (828)
+..+.||+|||||++++.+|+.+|++++.++|+...+...+ |++ |......+...+|||++++..
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~------------g~i---~~G~~~~GaW~cfDEfNrl~~ 670 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAM------------SRI---FVGLCQCGAWGCFDEFNRLEE 670 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHH------------HHH---HHHHHHHTCEEEEETTTSSCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHH------------HHH---HhhHhhcCcEEEehhhhcCCH
Confidence 45689999999999999999999999999999886654322 222 222222345889999999987
Q ss_pred CCCCChHHHHHHhcCccc------ccccccccC-Ceeec-CCCcEEEEecCCC----CCCCccccCceEEEEcCCCCHHH
Q 003349 422 DVRGDPASALLEVLDPEQ------NKTFNDHYL-NVPFD-LSKVIFVATANRA----QPIPPPLLDRMEVIELPGYTPEE 489 (828)
Q Consensus 422 ~~~~~~~~~Ll~~ld~~~------~~~~~~~~~-~~~~~-~~~viiI~TtN~~----~~l~~aLl~R~~~i~~~~~~~ee 489 (828)
+. .+.+.+.+..-+ ...+. .. |..+. ..++.|++|+|+. ..|++.|.+||..|.+..|+.+.
T Consensus 671 ~v----LSvv~~qi~~I~~a~~~~~~~~~--~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 671 RI----LSAVSQQIQTIQVALKENSKEVE--LLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREM 744 (3245)
T ss_dssp HH----HHHHHHHHHHHHHHHHHTCSEEC--CC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHH
T ss_pred HH----HHHHHHHHHHHHHHHHcCCCeEE--ecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHH
Confidence 65 565555433111 01111 11 22232 2368899999975 48999999999999999999988
Q ss_pred HHHHHHH
Q 003349 490 KLRIAMR 496 (828)
Q Consensus 490 ~~~Il~~ 496 (828)
..+|+-.
T Consensus 745 i~ei~L~ 751 (3245)
T 3vkg_A 745 IAQVMLY 751 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887643
No 110
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.00 E-value=4e-06 Score=89.04 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec--CCcCchhhhccCcccccccCcch---HHHHHHhcCCCCcEEEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL--GGVKDEADIRGHRRTYIGSMPGR---LIDGLKRVGVCNPVMLL 413 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~--~~~~~~~~l~g~~~~~vg~~~g~---l~~~~~~~~~~~~vl~i 413 (828)
++..++|+||||||||+||.++|...+.+...+++ .+..+ .+....... +.+.+.. .+ ++||
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~---------~~~~~le~~l~~i~~~l~~---~~-LLVI 188 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS---------GYNTDFNVFVDDIARAMLQ---HR-VIVI 188 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSST---------TCBCCHHHHHHHHHHHHHH---CS-EEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhh---------hhhcCHHHHHHHHHHHHhh---CC-EEEE
Confidence 45578999999999999999999875544333333 22111 111111111 2233333 23 9999
Q ss_pred ecccccCCCC
Q 003349 414 DEIDKTGSDV 423 (828)
Q Consensus 414 DEid~l~~~~ 423 (828)
|+++.+....
T Consensus 189 DsI~aL~~~~ 198 (331)
T 2vhj_A 189 DSLKNVIGAA 198 (331)
T ss_dssp ECCTTTC---
T ss_pred eccccccccc
Confidence 9999986543
No 111
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.88 E-value=5e-05 Score=96.94 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=55.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhh--hccC-ccccccc----CcchHHHHHHhcC-CC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEAD--IRGH-RRTYIGS----MPGRLIDGLKRVG-VC 407 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~--l~g~-~~~~vg~----~~g~l~~~~~~~~-~~ 407 (828)
+|..+|+|||||||||+||++++... +.+...+++.+..+... -.|. ...|+++ .+..+...+..+. ..
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~ 1160 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1160 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcC
Confidence 45579999999999999999998765 55677777765432111 0111 1356666 3445555555332 23
Q ss_pred CcEEEEecccccCCC
Q 003349 408 NPVMLLDEIDKTGSD 422 (828)
Q Consensus 408 ~~vl~iDEid~l~~~ 422 (828)
..++|+||++.+.|.
T Consensus 1161 ~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1161 VDVIVVDSVAALTPK 1175 (1706)
T ss_dssp CSEEEESCGGGCCCH
T ss_pred CeEEEeCchHhcCcc
Confidence 459999999998886
No 112
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.84 E-value=1.5e-05 Score=78.09 Aligned_cols=26 Identities=42% Similarity=0.801 Sum_probs=23.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
.+.|+||+|+|||||++.|+..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999998643
No 113
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.56 E-value=0.00024 Score=71.55 Aligned_cols=134 Identities=21% Similarity=0.180 Sum_probs=74.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCch---hhhccCcc---c---cccc--CcchHHHHHHhcCC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDE---ADIRGHRR---T---YIGS--MPGRLIDGLKRVGV 406 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~---~~l~g~~~---~---~vg~--~~g~l~~~~~~~~~ 406 (828)
.++++.|+|||||||++-.+|..+ |.....+++...... ..+.+... . +-|. ....+...+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~--- 83 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA--- 83 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc---
Confidence 368899999999999999998776 556665565431111 11122111 1 1111 12345554543
Q ss_pred CCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCC------------------CC
Q 003349 407 CNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRA------------------QP 468 (828)
Q Consensus 407 ~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~------------------~~ 468 (828)
.+.++++||+......... ...+++.+.... .+.+-+++|+|.. +.
T Consensus 84 ~pdlvIVDElG~~~~~~~r--~~~~~qDV~~~l--------------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~ 147 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSR--HTKRWQDIQELL--------------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRET 147 (228)
T ss_dssp CCSEEEESCTTCBCCTTCS--SSBHHHHHHHHH--------------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSC
T ss_pred CCCEEEEeCCCCCCcccch--hHHHHHHHHHHH--------------cCCCCEEEEccccccccHHHHHHHHcCCCcCCc
Confidence 2469999999876332211 112222222111 1234577888843 36
Q ss_pred CCccccCceEEEEcCCCCHHHHHHH
Q 003349 469 IPPPLLDRMEVIELPGYTPEEKLRI 493 (828)
Q Consensus 469 l~~aLl~R~~~i~~~~~~~ee~~~I 493 (828)
++..++++.+.|.+-..+++++.+-
T Consensus 148 vpd~~~~~a~~v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 148 LPDWVLQEAFDLVLIDLPPRELLER 172 (228)
T ss_dssp BCHHHHHTCSEEEEBCCCHHHHHHH
T ss_pred CccHHHhhCCeEEEecCCHHHHHHH
Confidence 7777888886666666666665443
No 114
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.48 E-value=5.5e-05 Score=74.52 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
++...+++||||+||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999996666544
No 115
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.38 E-value=0.00014 Score=71.98 Aligned_cols=25 Identities=40% Similarity=0.719 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l 364 (828)
|..+.|+||+|+||||+++.++..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 3468899999999999999999987
No 116
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.34 E-value=0.00026 Score=77.64 Aligned_cols=31 Identities=32% Similarity=0.449 Sum_probs=26.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
.++..++|+||||+||||++++++..++..+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~ 197 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKA 197 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcE
Confidence 4677899999999999999999999875543
No 117
>2pnl_A Protease VP4; acyl-enzyme, Ser/Lys DYAD, viral protease, substrate complex, product complex, hydrolase; 2.21A {Infectious pancreatic necrosis virus} PDB: 2pnm_A 3rbp_A 3r0b_A
Probab=97.23 E-value=0.00089 Score=63.26 Aligned_cols=71 Identities=25% Similarity=0.323 Sum_probs=55.0
Q ss_pred CcccEEEEccCCCCCCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCce-eeecCCHHHHHHHHHHcCCCEE
Q 003349 705 QGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGL-VLPVGGVKDKILAAHRYGIKRV 779 (828)
Q Consensus 705 ~~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~-v~~v~gi~~ki~~A~~~G~k~v 779 (828)
.+.+|.|.=...+ ...|+|+-||+|++. ......+| +++|||||.-+|+ |.||.++..|.++|.+.|.+-|
T Consensus 102 ~~~~i~v~~~~~p-~~~G~S~~LAial~~--~~i~k~IP-~~aFTGeI~edG~~I~pV~~i~~K~~iA~~~gL~LI 173 (203)
T 2pnl_A 102 RNGNIVVEKIFAG-PIMGPSAQLGLSLLV--NDIEDGVP-RMVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLI 173 (203)
T ss_dssp TTSCEEEEECSSC-CBCSSTTHHHHHHHH--HTCCSBCC-SSEECCEECTTSCBEECCSCHHHHHHHHHHTTCCEE
T ss_pred cCCceEEeeccCC-cccCchHHHHHHHHH--hhhcccCC-CeEEEeEecCCCcEEEecCchhHHHHHHHHcCCeee
Confidence 3445555432333 388999999998886 33323556 9999999999999 9999999999999999998633
No 118
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.08 E-value=0.00046 Score=66.92 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 374 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~ 374 (828)
+..++|+|+||+||||+++.|++.++.+++.++.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 45789999999999999999999998887766543
No 119
>2gef_A Protease VP4; birnavirus, serine/lysine DYAD mechamism, lysine general base, hydrolase; 2.20A {Blotched snakehead virus}
Probab=97.05 E-value=0.001 Score=62.91 Aligned_cols=58 Identities=29% Similarity=0.256 Sum_probs=49.4
Q ss_pred CCCCchhHHHHHHHHHHhccCCCCCCCEEEEeecCCCceeeecCCHHHHHHHHHHcCCCEEeecc
Q 003349 719 PKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPE 783 (828)
Q Consensus 719 ~~~g~sa~laia~ai~sa~~~~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~~A~~~G~k~viiP~ 783 (828)
...|+|+.||+|++ +.+. .+| +++|||||+- |+|.||.++..|.++|.+.|.+ .|=|.
T Consensus 131 ~f~G~S~~LAIAl~--~~ik--~VP-~~AFTGeI~e-G~I~pV~gi~lK~eiA~knGL~-LIgp~ 188 (217)
T 2gef_A 131 AVAGQSSSIALALA--SSLP--FVP-KAAYTGCLSG-TNVQPVQFGNLKARAAHKIGLP-LVGMT 188 (217)
T ss_dssp CEESSTTHHHHHHH--HHCS--SCC-SSEEECEEET-TEEECBSCHHHHHHHHHTTTCC-EEECB
T ss_pred ccccchhHHHHHHH--Hhcc--CCC-CeeEeeeccc-ceEEecCchhHHHHHHHHcCCe-eeccc
Confidence 37899999999888 3333 555 9999999999 9999999999999999999976 55565
No 120
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.01 E-value=0.0015 Score=73.94 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 317 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 317 G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
+|..+...+...+.. ...++++.||||||||+++..++..+
T Consensus 29 ~Q~~av~~~~~~i~~-------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKE-------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHS-------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 566777776665542 22389999999999999999999877
No 121
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.95 E-value=0.0006 Score=67.75 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
++..++|+||||+||||+++.||+.++.+++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~ 55 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFID 55 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 56689999999999999999999999877654
No 122
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.93 E-value=0.00062 Score=66.52 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
+..++|+||||+||||+++.+|+.++.+++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~ 35 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYD 35 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4578999999999999999999999887764
No 123
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.89 E-value=0.00032 Score=73.05 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=25.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.++..++++||+|+||||++++++..+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 46778999999999999999999998743
No 124
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.86 E-value=0.014 Score=68.04 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=35.3
Q ss_pred cccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHH
Q 003349 314 DHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 314 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~ 362 (828)
.++|.+..++.+.+.+... ......++++||+|+|||+||+.++.
T Consensus 125 ~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4789999888888876432 12345789999999999999998863
No 125
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.84 E-value=0.0012 Score=68.41 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
..+..++|+||||+||||+++.|++.++...+.++...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH
Confidence 34567899999999999999999999876556555443
No 126
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.82 E-value=0.00068 Score=65.40 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+..++|+||||+||||+++.||..++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 457899999999999999999999876443
No 127
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.80 E-value=0.15 Score=58.60 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=82.7
Q ss_pred cchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHH----HhCCCe---EEEecCCcC--chhhhc---
Q 003349 316 YGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAS----ALGRKF---IRISLGGVK--DEADIR--- 383 (828)
Q Consensus 316 ~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~----~l~~~~---~~i~~~~~~--~~~~l~--- 383 (828)
+|.+..++.|.+.+.... .....++.++|++|+|||+||+.+++ .....| ..+++++.. +...+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 488888888888875331 12346788999999999999999996 333333 244555432 111111
Q ss_pred ----cCccc--cccc----CcchHHHHHHhc-CCC-CcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCee
Q 003349 384 ----GHRRT--YIGS----MPGRLIDGLKRV-GVC-NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP 451 (828)
Q Consensus 384 ----g~~~~--~vg~----~~g~l~~~~~~~-~~~-~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~ 451 (828)
+.... .... ....+...++.. ... .-+|+||+++... .+ .+..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~---------~~--~~~~-------------- 262 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE---------TI--RWAQ-------------- 262 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH---------HH--HHHH--------------
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch---------hh--cccc--------------
Confidence 10000 0000 011233333332 222 4589999998632 11 1111
Q ss_pred ecCCCcEEEEecCCCCCCCccccCce-EEEEcCCCCHHHHHHHHHHh
Q 003349 452 FDLSKVIFVATANRAQPIPPPLLDRM-EVIELPGYTPEEKLRIAMRH 497 (828)
Q Consensus 452 ~~~~~viiI~TtN~~~~l~~aLl~R~-~~i~~~~~~~ee~~~Il~~~ 497 (828)
..+..||.||....-.. ..... ..+.+++++.++-.+++..+
T Consensus 263 --~~gs~ilvTTR~~~v~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 263 --ELRLRCLVTTRDVEISN--AASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp --HTTCEEEEEESBGGGGG--GCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred --cCCCEEEEEcCCHHHHH--HcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 02456788887532110 11112 36899999999988888876
No 128
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.77 E-value=0.00073 Score=73.54 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
++..++++||+|+||||++++++..+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 4458999999999999999999998743
No 129
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.77 E-value=0.0023 Score=64.05 Aligned_cols=38 Identities=32% Similarity=0.395 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.++..++++||||+|||++++.++...+.+...++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 56788999999999999999999984455666666544
No 130
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.71 E-value=0.0011 Score=63.59 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=25.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.++|.||||+||||+++.|++.++.+++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~ 31 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIK 31 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeec
Confidence 57899999999999999999999876653
No 131
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.70 E-value=0.0011 Score=64.43 Aligned_cols=31 Identities=45% Similarity=0.716 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.+..++|+|+||+||||+++.+++.++..++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 4567999999999999999999999876554
No 132
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.69 E-value=0.0011 Score=64.61 Aligned_cols=30 Identities=37% Similarity=0.700 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
+.++|+|+||+||||+++.|++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 468899999999999999999999877653
No 133
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.68 E-value=0.0011 Score=64.05 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=26.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
.++..++|+||||+||||+++.++..+|..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~ 35 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAA 35 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcE
Confidence 456689999999999999999999988643
No 134
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.65 E-value=0.00079 Score=66.08 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=28.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.+|..++|+||||+||||+++.|++.++...+.++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 45678999999999999999999987655544454
No 135
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.63 E-value=0.0012 Score=64.00 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=25.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.++|.||||+||||+++.||+.++.+++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 5889999999999999999999987655
No 136
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.63 E-value=0.0009 Score=65.55 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=26.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHH-hCCCeE
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASA-LGRKFI 369 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~-l~~~~~ 369 (828)
.++..++|+|+|||||||+++.+++. ++.+++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 34668999999999999999999998 664444
No 137
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.62 E-value=0.0013 Score=63.09 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
-.+++|.|+||+||||+++.||+.++.+++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3579999999999999999999999987764
No 138
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.62 E-value=0.0099 Score=60.03 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcC-chhhhccCccccccc--------CcchHHHHHHhcC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVK-DEADIRGHRRTYIGS--------MPGRLIDGLKRVG 405 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~-~~~~l~g~~~~~vg~--------~~g~l~~~~~~~~ 405 (828)
.++..++++||||+||||++..++..+ +.....+...-.. ....+. ...|. ....+.+.+....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~----srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQ----SRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCC----CCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHH----HhcCCCccccccCCHHHHHHHHHHHh
Confidence 456788899999999999998888666 4455555422211 110111 11121 1123444444321
Q ss_pred --CCCcEEEEecccccCC
Q 003349 406 --VCNPVMLLDEIDKTGS 421 (828)
Q Consensus 406 --~~~~vl~iDEid~l~~ 421 (828)
....+|+|||+..+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~ 103 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDD 103 (223)
T ss_dssp SCTTCCEEEECSGGGSCT
T ss_pred hCCCCCEEEEecCccCcH
Confidence 1235999999998654
No 139
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.61 E-value=0.0014 Score=65.09 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.++..++|.||||+||||+++.|++.+|.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 45778999999999999999999999854
No 140
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.60 E-value=0.0014 Score=70.63 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccccccC---cchHHHHHHhcCC-CCcEEEEe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSM---PGRLIDGLKRVGV-CNPVMLLD 414 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~vg~~---~g~l~~~~~~~~~-~~~vl~iD 414 (828)
++..++++||+|+||||++++++..+......+.+.+... ..+...+ ..++.. .......+..+-. .++++++|
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e-~~~~~~~-~~i~~~~ggg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE-IVFKHHK-NYTQLFFGGNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC-CCCSSCS-SEEEEECBTTBCHHHHHHHHTTSCCSEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec-cccccch-hEEEEEeCCChhHHHHHHHHhhhCCCEEEEc
Confidence 4567999999999999999999999876555555544321 1111011 111111 1123334444333 34599999
Q ss_pred cccc
Q 003349 415 EIDK 418 (828)
Q Consensus 415 Eid~ 418 (828)
|...
T Consensus 248 E~~~ 251 (330)
T 2pt7_A 248 ELRS 251 (330)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 9875
No 141
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.60 E-value=0.0013 Score=64.47 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.+..++|.|+||+||||+++.+++.++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34578899999999999999999998766543
No 142
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.59 E-value=0.0019 Score=64.12 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=27.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
..+..++|+|+||+||||+++.|++.++.+++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 345579999999999999999999999876543
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.57 E-value=0.0027 Score=63.43 Aligned_cols=39 Identities=26% Similarity=0.504 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGV 376 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~ 376 (828)
.++..+.+.||+|+|||||+++|+..+. .....+.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 5677899999999999999999999985 34666766553
No 144
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.56 E-value=0.0013 Score=63.93 Aligned_cols=31 Identities=39% Similarity=0.694 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
++..++|.|+||+||||+++.|++.++.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4567899999999999999999999987765
No 145
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.54 E-value=0.0032 Score=66.36 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
..+..++|.||||+||||+++.+++.++.....++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 345578899999999999999999988555566654
No 146
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.53 E-value=0.061 Score=56.75 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=45.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh----CCCeEEEecCCcCchh--hhcc--Cc---ccccccCcchHHHHHHhcCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLGGVKDEA--DIRG--HR---RTYIGSMPGRLIDGLKRVGV 406 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l----~~~~~~i~~~~~~~~~--~l~g--~~---~~~vg~~~g~l~~~~~~~~~ 406 (828)
.++.+++|+||+|+||||++..+|..+ |.....++++...... .+.. .. ..+....+..+...+... .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~ 181 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S 181 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence 356789999999999999999999876 3355556654432111 1110 00 011122233455555544 2
Q ss_pred CCcEEEEeccc
Q 003349 407 CNPVMLLDEID 417 (828)
Q Consensus 407 ~~~vl~iDEid 417 (828)
...++++|-..
T Consensus 182 ~~dlvIiDT~G 192 (296)
T 2px0_A 182 EYDHVFVDTAG 192 (296)
T ss_dssp GSSEEEEECCC
T ss_pred CCCEEEEeCCC
Confidence 34699999443
No 147
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.51 E-value=0.0012 Score=64.47 Aligned_cols=30 Identities=47% Similarity=0.811 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+..++|+|+||+||||+++.|++.++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457889999999999999999998875443
No 148
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.51 E-value=0.0013 Score=72.20 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.++..++++||+|+||||++++++..+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 45678999999999999999999998753
No 149
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.51 E-value=0.0016 Score=64.11 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
++..++|.|+||+||||+++.|++.++.+++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4567999999999999999999999976544
No 150
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.48 E-value=0.0019 Score=65.13 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
++..++|.|+||+||||+++.||+.++.+++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 33 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHL 33 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 4567899999999999999999999986544
No 151
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.45 E-value=0.0022 Score=63.61 Aligned_cols=30 Identities=37% Similarity=0.566 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+..++|+|+||+||||+++.|++.++..++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i 47 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence 457999999999999999999999976544
No 152
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.44 E-value=0.033 Score=70.59 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=84.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHh---C----CCeEEEecCCcCchhhh---
Q 003349 313 SDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL---G----RKFIRISLGGVKDEADI--- 382 (828)
Q Consensus 313 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l---~----~~~~~i~~~~~~~~~~l--- 382 (828)
..++|.++.++.|.+.+... ......+.++|++|+|||+||+.++... . .....++++.......+
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 34789999999998877532 1234578899999999999999887542 1 22345666553221100
Q ss_pred -------ccCc--ccccccCcchHHHHHHhcC---CCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCe
Q 003349 383 -------RGHR--RTYIGSMPGRLIDGLKRVG---VCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 450 (828)
Q Consensus 383 -------~g~~--~~~vg~~~g~l~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~ 450 (828)
.... ..........+...++..- ...-+|+||+++.. .. +..+
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~---------~~-~~~~--------------- 254 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP---------WV-LKAF--------------- 254 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH---------HH-HTTT---------------
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH---------HH-HHhh---------------
Confidence 0000 0001111223444444221 11449999999842 11 1111
Q ss_pred eecCCCcEEEEecCCCCCCCccccCceEEEEcCC-CCHHHHHHHHHHh
Q 003349 451 PFDLSKVIFVATANRAQPIPPPLLDRMEVIELPG-YTPEEKLRIAMRH 497 (828)
Q Consensus 451 ~~~~~~viiI~TtN~~~~l~~aLl~R~~~i~~~~-~~~ee~~~Il~~~ 497 (828)
..++.||.||....-.. .+......+.+++ ++.++-.+++..+
T Consensus 255 ---~~~~~ilvTtR~~~~~~-~~~~~~~~~~~~~~l~~~~a~~l~~~~ 298 (1249)
T 3sfz_A 255 ---DNQCQILLTTRDKSVTD-SVMGPKHVVPVESGLGREKGLEILSLF 298 (1249)
T ss_dssp ---CSSCEEEEEESSTTTTT-TCCSCBCCEECCSSCCHHHHHHHHHHH
T ss_pred ---cCCCEEEEEcCCHHHHH-hhcCCceEEEecCCCCHHHHHHHHHHh
Confidence 12346888887553221 1112223577875 8998888888765
No 153
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.42 E-value=0.0019 Score=61.91 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
..++|+||||+||||+++.+ +.++.+++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 46889999999999999999 887766543
No 154
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.39 E-value=0.0097 Score=60.77 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=25.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.++++||+|+|||.++..++..++.+.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 4889999999999999999888866666554
No 155
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.38 E-value=0.0019 Score=65.08 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
++.+++|.||||+||+|.|+.|++.++.+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~h 57 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNH 57 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCce
Confidence 455788999999999999999999986543
No 156
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.38 E-value=0.0019 Score=66.74 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=26.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
.++++||||+||||+|+.||+.++..++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 578999999999999999999998766543
No 157
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.38 E-value=0.0027 Score=61.66 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRIS 372 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~ 372 (828)
++..+.|+|++|+||||+++.++..+ |.+++.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 56678899999999999999999988 77777665
No 158
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.37 E-value=0.0017 Score=63.46 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
+..++|.||||+||||+++.|++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999886
No 159
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.37 E-value=0.002 Score=63.17 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+..++|.|+||+||||+++.+++.++.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 346889999999999999999999876543
No 160
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.37 E-value=0.0044 Score=71.88 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLG 374 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~ 374 (828)
...+++.||||||||+++.+++..+ +.++..+..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 4678999999999999999998876 4444444333
No 161
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.36 E-value=0.0037 Score=80.96 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV 376 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~ 376 (828)
.++.+++|+||||||||+||.+++... |.....+++.+.
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 356799999999999999999998765 445566666654
No 162
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.34 E-value=0.0023 Score=61.57 Aligned_cols=28 Identities=36% Similarity=0.676 Sum_probs=25.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.++|+|+||+||||+++.|++.++.+++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5889999999999999999999986654
No 163
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.31 E-value=0.003 Score=62.62 Aligned_cols=28 Identities=32% Similarity=0.524 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..+.|.||+|+||||+++.|+..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999883
No 164
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.30 E-value=0.0021 Score=64.64 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
++..++|.|+||+||||+++.||+.++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 34578999999999999999999999765543
No 165
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.26 E-value=0.0026 Score=62.59 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+..++|.|+||+||||+++.|++.++.+++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 357899999999999999999999975443
No 166
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.25 E-value=0.0027 Score=63.50 Aligned_cols=28 Identities=43% Similarity=0.763 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+++|.||||+||+|.|+.||+.++.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 4789999999999999999999976543
No 167
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.24 E-value=0.011 Score=58.07 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCc---CchhhhccCc--------ccccccCc------chHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV---KDEADIRGHR--------RTYIGSMP------GRLID 399 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~---~~~~~l~g~~--------~~~vg~~~------g~l~~ 399 (828)
...+++++++|.||||.|-.+|-.. |.+...+.+... ..+..+...- ..|.-... .....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3568899999999999999888544 667777765321 1111111000 01111110 01111
Q ss_pred HHH----hc-CCCCcEEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCCCCCcccc
Q 003349 400 GLK----RV-GVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLL 474 (828)
Q Consensus 400 ~~~----~~-~~~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~~l~~aLl 474 (828)
.+. .. .....+|+|||+..+..-. --+.+.+++++..+ ..+.-+|+|+|.+ +++|+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g-~l~~~ev~~~l~~R---------------p~~~~vIlTGr~a---p~~l~ 168 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYD-YLPLEEVISALNAR---------------PGHQTVIITGRGC---HRDIL 168 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTT-SSCHHHHHHHHHTS---------------CTTCEEEEECSSC---CHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCC-CCCHHHHHHHHHhC---------------cCCCEEEEECCCC---cHHHH
Confidence 221 11 1224599999997642110 00156677777532 2356789998874 57777
Q ss_pred CceE
Q 003349 475 DRME 478 (828)
Q Consensus 475 ~R~~ 478 (828)
..-|
T Consensus 169 e~AD 172 (196)
T 1g5t_A 169 DLAD 172 (196)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 7666
No 168
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.22 E-value=0.0027 Score=64.36 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
++..++|.|+||+||||+++.|++.++..++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 3467899999999999999999999876544
No 169
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.21 E-value=0.0034 Score=63.93 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=26.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.+..++|.|+||+||||+++.||+.++..++
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 45 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHL 45 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3457999999999999999999999986544
No 170
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.20 E-value=0.0034 Score=60.02 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=25.6
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.++|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999876653
No 171
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.20 E-value=0.0031 Score=61.62 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+..++|.|+||+||||+++.+++.++.+++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 347889999999999999999999875444
No 172
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.18 E-value=0.0032 Score=63.10 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=25.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.++|+||||+||||+++.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47899999999999999999998766553
No 173
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.16 E-value=0.0034 Score=62.85 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=25.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.++|.||||+||||+++.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 47899999999999999999999766553
No 174
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.14 E-value=0.004 Score=63.90 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
++..++|.||||+||||+++.|++.++..++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4557899999999999999999999875544
No 175
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.13 E-value=0.0026 Score=64.13 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
.+..++|.||||+||||+++.||+.++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~ 33 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAH 33 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 345789999999999999999999997543
No 176
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.12 E-value=0.0032 Score=62.36 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
+|..+.|+||+|+||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 567899999999999999999999863
No 177
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.12 E-value=0.004 Score=63.90 Aligned_cols=31 Identities=29% Similarity=0.564 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
++..++|.||||+||||+++.|++.++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4568999999999999999999998876443
No 178
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.12 E-value=0.0021 Score=62.21 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++|.||||+||||+++.+++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 5889999999999999999983
No 179
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.11 E-value=0.0035 Score=67.52 Aligned_cols=52 Identities=21% Similarity=0.431 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 317 GLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 317 G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
..+.+.+.+...+..... ....++++|+||||+||||++++||+.++.+++.
T Consensus 3 ~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 445666666666543322 1223468999999999999999999999776643
No 180
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.11 E-value=0.0033 Score=64.81 Aligned_cols=31 Identities=35% Similarity=0.609 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
+..+.|+|+||+||||+++.||+.++.+++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 6679999999999999999999999876654
No 181
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.10 E-value=0.0038 Score=61.83 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+..++|.|+||+||||+++.|++.++..++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i 44 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHL 44 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 347889999999999999999999875443
No 182
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.10 E-value=0.0031 Score=64.39 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 66 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN 66 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECC
Confidence 46789999999999999999999999887778887665
No 183
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.10 E-value=0.0037 Score=63.04 Aligned_cols=30 Identities=37% Similarity=0.705 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+..+.|+||||+||||+++.|++.++.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 357899999999999999999999875443
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.07 E-value=0.0036 Score=60.97 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
++..+.|+||+|+|||||++.|++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 567899999999999999999999864
No 185
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.01 E-value=0.0042 Score=62.06 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=25.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.+|..+.|+||+|+||||+++.|+..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 35778999999999999999999998753
No 186
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.99 E-value=0.015 Score=63.03 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 375 (828)
.++..++++||||+|||+|+..++..+ +.....++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 467889999999999999999998654 45566666554
No 187
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.99 E-value=0.0034 Score=63.59 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++++..+...-+.+.+.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 65 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG 65 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 36788999999999999999999998877777777665
No 188
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.99 E-value=0.0029 Score=60.35 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+|..+.|.||.|+|||||+++++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 467789999999999999999999998
No 189
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.98 E-value=0.013 Score=63.34 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 375 (828)
.++..++++||||+|||||+..++..+ +.....++...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 467789999999999999999999875 44555666544
No 190
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.97 E-value=0.0039 Score=64.80 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 67 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG 67 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 47788999999999999999999998877777777665
No 191
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.95 E-value=0.0047 Score=63.78 Aligned_cols=32 Identities=34% Similarity=0.677 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.++..+.|.||+|+||||+++.|++.+|..+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 35678999999999999999999999976544
No 192
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.93 E-value=0.0043 Score=67.21 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=34.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 376 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~ 376 (828)
.+|..+.|.||+|||||||+++|+......-+.+.+.+.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~ 66 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK 66 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCE
Confidence 467889999999999999999999999887788877663
No 193
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.93 E-value=0.033 Score=60.42 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..++|+||+|+||||+++.||..+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 3567899999999999999999999874
No 194
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.93 E-value=0.011 Score=58.51 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLG 374 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~ 374 (828)
.++..+.+.||+|+||||+++.++..+ +.++..+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 455689999999999999999999987 4444444433
No 195
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.92 E-value=0.0046 Score=61.02 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=24.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.+.|.|+||+||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999986543
No 196
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.92 E-value=0.0047 Score=61.06 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh-CCCeEEEe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL-GRKFIRIS 372 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l-~~~~~~i~ 372 (828)
++..+.|.|+||+||||+++.|++.+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35678999999999999999999988 45565554
No 197
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.91 E-value=0.0089 Score=63.01 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.++..+.+.||+|+||||+++.|+..++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45567899999999999999999998853
No 198
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.90 E-value=0.0042 Score=61.75 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
+..++|.|+||+||||+++.|++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4578899999999999999999998764
No 199
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.88 E-value=0.0052 Score=61.57 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=25.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.++|.||||+||||+++.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 47899999999999999999998766543
No 200
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.88 E-value=0.0065 Score=59.38 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=26.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh---CCCeEEEe
Q 003349 342 VLCFVGPPGVGKTSLASSIASAL---GRKFIRIS 372 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l---~~~~~~i~ 372 (828)
.+.|.|+||+||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 77766543
No 201
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.87 E-value=0.0043 Score=61.67 Aligned_cols=28 Identities=43% Similarity=0.657 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..++|+||||+||||+++.|++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3567889999999999999999999874
No 202
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.87 E-value=0.0043 Score=64.89 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+....+.+.+.+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G 69 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN 69 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECC
Confidence 46788999999999999999999999877777777665
No 203
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.87 E-value=0.0056 Score=62.27 Aligned_cols=29 Identities=38% Similarity=0.735 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
+..+.+.||||+||||+++.|++.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45789999999999999999999997554
No 204
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.86 E-value=0.0044 Score=62.30 Aligned_cols=38 Identities=37% Similarity=0.563 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 70 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 70 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 36778999999999999999999998877777777665
No 205
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.84 E-value=0.0048 Score=64.08 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 85 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG 85 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 47789999999999999999999998877777777665
No 206
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.84 E-value=0.0041 Score=61.63 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
+|..+.|+||||+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999999987
No 207
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.82 E-value=0.0061 Score=63.19 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHH---hCCCeEEEe
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASA---LGRKFIRIS 372 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~---l~~~~~~i~ 372 (828)
+..++|+|+||+||||+++.+++. .|.+++.++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 457889999999999999999998 566655444
No 208
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.82 E-value=0.0055 Score=66.88 Aligned_cols=38 Identities=32% Similarity=0.471 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|||||||+++|+......-+.+.+.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G 64 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE 64 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECC
Confidence 46788999999999999999999999987778887765
No 209
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.82 E-value=0.005 Score=61.41 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.+|..+.|.||+|+|||||+++|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678899999999999999999999874
No 210
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.81 E-value=0.0047 Score=63.97 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 68 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 46788999999999999999999999877777777665
No 211
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.81 E-value=0.0028 Score=63.11 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
.+..++|.|+||+||||+++.|++.++...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 456899999999999999999999875443
No 212
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.80 E-value=0.0031 Score=64.80 Aligned_cols=38 Identities=24% Similarity=0.454 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.+.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 63 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 46778999999999999999999998866555555554
No 213
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.79 E-value=0.005 Score=63.11 Aligned_cols=38 Identities=32% Similarity=0.541 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 67 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 46788999999999999999999998877777777665
No 214
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.77 E-value=0.0049 Score=61.23 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.+.|+||+|+||||+++.+++ +|.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 578999999999999999998 766554
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.77 E-value=0.12 Score=57.33 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV 376 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~ 376 (828)
++.+++++|+||+||||++..+|..+ +.....+++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 35689999999999999999999877 556666666654
No 216
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.76 E-value=0.0034 Score=62.60 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
++..++|.|+||+||||+++.|++.++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999987543
No 217
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.76 E-value=0.0056 Score=61.04 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.++..+.|.||+|+||||+++.|+..++..+..+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 35668999999999999999999999864344444
No 218
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.75 E-value=0.0052 Score=63.23 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g 70 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 36788999999999999999999999877777777665
No 219
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.75 E-value=0.0056 Score=63.37 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 76 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 76 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 47789999999999999999999998877777777655
No 220
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.74 E-value=0.0061 Score=61.56 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
.++|.||||+||||+++.|++.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~ 28 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH 28 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 478999999999999999999987543
No 221
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.74 E-value=0.0075 Score=59.74 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=26.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.+.+.|++|+||||+++.+++.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 78899999999999999999999866653
No 222
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.73 E-value=0.0055 Score=63.97 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g 80 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 47788999999999999999999999877777777665
No 223
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.72 E-value=0.0063 Score=66.06 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|||||||+++||......-+.+.+.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDD 64 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECC
Confidence 46788999999999999999999999877778887765
No 224
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.72 E-value=0.0057 Score=62.18 Aligned_cols=38 Identities=37% Similarity=0.488 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 69 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence 36788999999999999999999998876666665543
No 225
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.72 E-value=0.0065 Score=66.05 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|||||||+++||..+...-+.+.+.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDE 64 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 46788999999999999999999999877778777665
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.71 E-value=0.16 Score=56.39 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV 376 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~ 376 (828)
++.+++++||+|+||||++..+|..+ +.....+++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 45688999999999999999999877 556666665543
No 227
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.70 E-value=0.0058 Score=60.51 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.3
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.+.++|++|+||||+++.|++ ++.+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i 29 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVL 29 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEE
Confidence 578999999999999999999 765443
No 228
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.70 E-value=0.0053 Score=60.05 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
..+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999999874
No 229
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.69 E-value=0.0051 Score=60.04 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=22.3
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++|.|+||+||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999885
No 230
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.69 E-value=0.0049 Score=63.50 Aligned_cols=37 Identities=35% Similarity=0.605 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+... +.+.+.+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g 60 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAG 60 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECC
Confidence 467889999999999999999999998777 8887765
No 231
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.69 E-value=0.0053 Score=65.43 Aligned_cols=31 Identities=39% Similarity=0.704 Sum_probs=26.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
..++++||||+|||++++.||+.++..++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 3688999999999999999999987555444
No 232
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.68 E-value=0.0058 Score=64.10 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 82 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECC
Confidence 46788999999999999999999999877777777665
No 233
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.67 E-value=0.0066 Score=65.77 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|||||||+++||..+...-+.+.+.+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 76 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 36788999999999999999999999877777777665
No 234
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.66 E-value=0.079 Score=56.13 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLG 374 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~ 374 (828)
++..++++||+|+||||++..+|..+ +.....+++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 45689999999999999999999887 3444445444
No 235
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.66 E-value=0.007 Score=66.02 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|||||||+++||..+...-+.+.+.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 72 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 72 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECC
Confidence 46788999999999999999999999877778887766
No 236
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.65 E-value=0.0071 Score=61.93 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
..+.|.||+|+|||||+++++..+....+.+.+.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 59 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 78899999999999999999999877777777765
No 237
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.64 E-value=0.0041 Score=63.61 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
.+|..+.|+||+|+|||||+++|+..+...-+.+.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAI 64 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 467889999999999999999999887544444443
No 238
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.63 E-value=0.0059 Score=66.05 Aligned_cols=38 Identities=34% Similarity=0.427 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|||||||+++||......-+.+.+.+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g 61 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG 61 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Confidence 46788999999999999999999999877778877766
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.62 E-value=0.006 Score=60.46 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
++..+.|+||+|+|||||++.|+..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999999874
No 240
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.61 E-value=0.0089 Score=58.62 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=25.6
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh---CCCeEEEe
Q 003349 342 VLCFVGPPGVGKTSLASSIASAL---GRKFIRIS 372 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l---~~~~~~i~ 372 (828)
.+.|.|++|+||||+++.|++.+ +.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 37799999999999999999998 77766443
No 241
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.60 E-value=0.0066 Score=63.19 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g 68 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG 68 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC
Confidence 46788999999999999999999998877777777665
No 242
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.60 E-value=0.0073 Score=58.94 Aligned_cols=28 Identities=39% Similarity=0.693 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..++|.|+||+||||+++.++..++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3566889999999999999999999884
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.60 E-value=0.0098 Score=58.80 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=25.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..+.|.||+|+|||||+++|++.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4677899999999999999999998864
No 244
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.59 E-value=0.0049 Score=64.18 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 46788999999999999999999998876666676655
No 245
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.57 E-value=0.0098 Score=64.83 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
++..++++||+|+||||++++++..+......+.+.+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 5678999999999999999999999876555555444
No 246
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.56 E-value=0.0075 Score=65.85 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|||||||+++||..+...-+.+.+.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD 64 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECC
Confidence 36788999999999999999999999877777777765
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.55 E-value=0.0068 Score=61.06 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+|..+.|+||+|+|||||++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 367789999999999999999999987
No 248
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.52 E-value=0.0098 Score=67.81 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
.+.+++++||+|+||||++++++..+......+.+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 45679999999999999999999988654444443
No 249
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.49 E-value=0.0052 Score=60.09 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l 364 (828)
..++|.||||+||||+++.|+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 467899999999999999999855
No 250
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.44 E-value=0.006 Score=66.19 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|||||||+++||......-+.+.+.+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 66 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Confidence 46788999999999999999999999877777777665
No 251
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.44 E-value=0.0085 Score=59.08 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
++..+.|+|++|+||||+++.|++. |.+++
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 4457899999999999999999997 65544
No 252
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.40 E-value=0.007 Score=64.27 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
++..++|+||+|+||||+++.+|..+......+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V 133 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV 133 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 567899999999999999999999885443333
No 253
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.40 E-value=0.018 Score=74.65 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccC---cccc------cccCcchHHHHHHhcC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGH---RRTY------IGSMPGRLIDGLKRVG 405 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~---~~~~------vg~~~g~l~~~~~~~~ 405 (828)
.++.+++++||||||||+||.+++... |.+...+++....+.-..... ...+ .+.....+...+.+..
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~ 1158 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1158 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhC
Confidence 366789999999999999999988654 566777777664332211100 0000 1111223334444332
Q ss_pred CCCcEEEEecccccCC
Q 003349 406 VCNPVMLLDEIDKTGS 421 (828)
Q Consensus 406 ~~~~vl~iDEid~l~~ 421 (828)
...+++||++..+.+
T Consensus 1159 -~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1159 -AVDVIVVDSVAALTP 1173 (2050)
T ss_dssp -CCSEEEESCGGGCCC
T ss_pred -CCCEEEECCcccccc
Confidence 355999999999965
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.39 E-value=0.011 Score=60.28 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=27.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.++..+.|.|++|+||||+++.|++.+|.+++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 35668999999999999999999999886544
No 255
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.39 E-value=0.0052 Score=65.73 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
++..++|.||+|+|||+|+..||+.++..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs 70 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence 34578999999999999999999998755443
No 256
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.39 E-value=0.011 Score=65.74 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=26.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
.++..++++||+|+||||++++++..+...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 356689999999999999999999998654
No 257
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.38 E-value=0.01 Score=58.54 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=25.6
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
..+.|+|++|+||||+++.+++.+|.+++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 368899999999999999999988765543
No 258
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.37 E-value=0.0092 Score=60.17 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.+|..+.|.||+|+|||||+++|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4677899999999999999999999875
No 259
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.36 E-value=0.01 Score=64.32 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G 89 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 47889999999999999999999999877777777665
No 260
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.35 E-value=0.013 Score=62.04 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..++|+||+|+||||+++.||..+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3566899999999999999999999874
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.34 E-value=0.04 Score=59.74 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 375 (828)
.++..++++||||+|||++|..++..+ +.+...++...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467789999999999999999998764 45666777654
No 262
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.32 E-value=0.0097 Score=57.36 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHH
Q 003349 339 RGPVLCFVGPPGVGKTSLASSI 360 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~l 360 (828)
+|..++|+||+|+|||||++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 5678999999999999999963
No 263
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.31 E-value=0.0097 Score=59.85 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+|..++++||||+|||||++.++..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999654
No 264
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.29 E-value=0.0078 Score=60.59 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.++..++|+||||+|||||++.++..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999865
No 265
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.26 E-value=0.0092 Score=60.91 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHH
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~ 362 (828)
.+|..++|+||+|+|||||+++++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999999999993
No 266
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.24 E-value=0.012 Score=60.56 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
+..+.|.|+||+||||+++.|++.++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 3478899999999999999999998865
No 267
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.24 E-value=0.06 Score=52.85 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=27.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~ 372 (828)
.++...+++||+|+||||.+..++..+ +.....+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 346688899999999999988887765 55665554
No 268
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.24 E-value=0.033 Score=63.66 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=45.6
Q ss_pred EEEEecccccCCCCCCChHHHHHHhcCcccccccccccCCeeecCCCcEEEEecCCCC--CCCccccCceE-EEEcCCCC
Q 003349 410 VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQ--PIPPPLLDRME-VIELPGYT 486 (828)
Q Consensus 410 vl~iDEid~l~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~~~~~~viiI~TtN~~~--~l~~aLl~R~~-~i~~~~~~ 486 (828)
+++|||+..+......+....|.++...+. ..++.+|++|.++. .++..+++-|. .|.|..-+
T Consensus 346 vvVIDE~~~L~~~~~~~~~~~L~~Iar~GR--------------a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s 411 (574)
T 2iut_A 346 VVVVDEFADMMMIVGKKVEELIARIAQKAR--------------AAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSS 411 (574)
T ss_dssp EEEESCCTTHHHHTCHHHHHHHHHHHHHCT--------------TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSC
T ss_pred EEEEeCHHHHhhhhhHHHHHHHHHHHHHHh--------------hCCeEEEEEecCcccccccHHHHhhhccEEEEEcCC
Confidence 899999997753221111233444443221 23567777777776 78888888775 57788878
Q ss_pred HHHHHHHHH
Q 003349 487 PEEKLRIAM 495 (828)
Q Consensus 487 ~ee~~~Il~ 495 (828)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 877776663
No 269
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.20 E-value=0.0084 Score=63.63 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|+||+|+|||||++.|+..+...-+.|.+.+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G 115 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDG 115 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECC
Confidence 47789999999999999999999999887777777665
No 270
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.16 E-value=0.012 Score=58.86 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+..+.|.|++|+||||+++.|++ +|.+++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~i 32 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVI 32 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 34788999999999999999998 765443
No 271
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.12 E-value=0.011 Score=61.16 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||+++|+..+. +-+.+.+.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~G~I~i~g 80 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDIKIGG 80 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC-CEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC-CCeEEEECC
Confidence 4678899999999999999999999875 467776655
No 272
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.10 E-value=0.011 Score=59.05 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC----CCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG----RKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~----~~~~~i~ 372 (828)
.++..++|.|+||+||||+++.+++.++ .+...++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3566889999999999999999999874 3455554
No 273
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.10 E-value=0.011 Score=60.51 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.++..+.|.||+|+||||+++.|+..+|.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 35668999999999999999999998864
No 274
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.10 E-value=0.021 Score=66.70 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l 364 (828)
+..+++.||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4678999999999999988877665
No 275
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.10 E-value=0.049 Score=59.29 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=48.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhh--ccCc-c-cccc--cCcchHHHHHHhc--CC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADI--RGHR-R-TYIG--SMPGRLIDGLKRV--GV 406 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l--~g~~-~-~~vg--~~~g~l~~~~~~~--~~ 406 (828)
.++..++++||||+|||++|..++..+ +.+...++.....+.... .|.. . -++- .....+...++.. ..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 467789999999999999999988764 556777776543222110 0100 0 0000 0112222333221 12
Q ss_pred CCcEEEEecccccCC
Q 003349 407 CNPVMLLDEIDKTGS 421 (828)
Q Consensus 407 ~~~vl~iDEid~l~~ 421 (828)
...+|+||.+..+.+
T Consensus 152 ~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 152 AIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCEEEEeChHHhcc
Confidence 245999999999874
No 276
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.09 E-value=0.0087 Score=61.68 Aligned_cols=38 Identities=32% Similarity=0.518 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHH--hCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASA--LGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~--l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+.. +...-+.+.+.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 66 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG 66 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECC
Confidence 46788999999999999999999986 333345565554
No 277
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.09 E-value=0.012 Score=62.25 Aligned_cols=27 Identities=37% Similarity=0.726 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+|..+.|+||+|+|||||++.|+..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 577889999999999999999999998
No 278
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.07 E-value=0.015 Score=58.31 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
+..+.|+|+||+||||+++.+++.++.+++
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~ 32 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYV 32 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 346889999999999999999999886554
No 279
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.07 E-value=0.011 Score=61.39 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
|..+.+.||+|+|||||+++|+..+ ..-+.+.+.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g 64 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFING 64 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECC
Confidence 7789999999999999999999998 7778887766
No 280
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.07 E-value=0.0082 Score=60.85 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=18.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHH-HHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIA-SALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la-~~l~ 365 (828)
.+|..+.|+||+|+||||+++.|+ ..+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 367789999999999999999999 8763
No 281
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.06 E-value=0.011 Score=62.34 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
.+..+++.||+|+|||+|+..+|+.++..++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~ii 39 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELI 39 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence 3457889999999999999999999865443
No 282
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.06 E-value=0.016 Score=58.80 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
.++..++|+||||+|||++++.++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46788999999999999999999985
No 283
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.04 E-value=0.0083 Score=59.63 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=27.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLG 374 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~ 374 (828)
.++..+.++||||+||||+++.|++.+. .+..++.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~-~~~~i~~D 54 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP-NCSVISQD 54 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST-TEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC-CcEEEeCC
Confidence 3455788999999999999999998762 23444443
No 284
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.00 E-value=0.01 Score=65.13 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|||||||+++|+..+. .-+.+.+.+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G 81 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDG 81 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECC
Confidence 4788999999999999999999999875 556666655
No 285
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.98 E-value=0.01 Score=62.58 Aligned_cols=36 Identities=36% Similarity=0.450 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 97 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEEC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 477889999999999999999999987544444443
No 286
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.96 E-value=0.07 Score=59.40 Aligned_cols=36 Identities=33% Similarity=0.399 Sum_probs=29.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 375 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 375 (828)
+.+++++|+||+||||++..+|..+ |.....+++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4589999999999999999999877 45666666654
No 287
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.93 E-value=0.026 Score=60.46 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.+|..++|+||+|+||||+++.||..+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999873
No 288
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.90 E-value=0.031 Score=59.65 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCC-----CeEEEecCCc
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGR-----KFIRISLGGV 376 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~-----~~~~i~~~~~ 376 (828)
+..+.+.||+|+||||++++|+..+.. ....+.+.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 347889999999999999999999853 3455555553
No 289
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.89 E-value=0.014 Score=60.30 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 36788999999999999999999998866666654
No 290
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.87 E-value=0.011 Score=61.40 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh--CCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL--GRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l--~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+... ...-+.+.+.+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 83 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 477899999999999999999999874 22345665554
No 291
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.83 E-value=0.011 Score=62.44 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
++.+++.||+|+|||+|+..+|+.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 456889999999999999999998864
No 292
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.82 E-value=0.014 Score=62.12 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..+.|.||+|+|||||++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4667899999999999999999999884
No 293
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.81 E-value=0.02 Score=56.84 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
..++.+.||+|||||++++.+|+.+|.+++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 457899999999999999999999998877
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.78 E-value=0.016 Score=57.80 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
+|..+.|.||+|+|||||+++++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999987
No 295
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.75 E-value=0.028 Score=57.03 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=26.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~ 372 (828)
.+|..++++||||+|||+++..++... +.+...++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 467889999999999999998887654 33444444
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.026 Score=54.82 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.....++++|++|+|||+|+.+++...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999998753
No 297
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.66 E-value=0.052 Score=66.06 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=42.4
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHH------hCCCeEEEecCCcCc
Q 003349 315 HYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASA------LGRKFIRISLGGVKD 378 (828)
Q Consensus 315 i~G~~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~------l~~~~~~i~~~~~~~ 378 (828)
.+|.+..++.+.+.+... .....+.++||+|+||||||+.++.. +......++++...+
T Consensus 130 ~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d 194 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS
T ss_pred CCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC
Confidence 478888888888877531 22468899999999999999998853 233455667665433
No 298
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.61 E-value=0.018 Score=60.64 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+|..++|.||||+|||||++.++..+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 577899999999999999999999876
No 299
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.60 E-value=0.025 Score=55.38 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=22.6
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
.++|.||+|+|||||++.|.+.....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 377999999999999999988865443
No 300
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.55 E-value=0.14 Score=50.90 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=26.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~ 372 (828)
.++...+++||.|+||||.+..++..+ +.....+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 345677799999999999888877655 55666554
No 301
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.52 E-value=0.021 Score=60.15 Aligned_cols=39 Identities=15% Similarity=0.390 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEecCCcC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRISLGGVK 377 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~~~~~~ 377 (828)
++..+.+.||+|+||||+++.+++.++ .....++++.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 345789999999999999999999775 345667766654
No 302
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.48 E-value=0.021 Score=57.92 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
++..+.|.||||+||||+++.|++.++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5667889999999999999999999864
No 303
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.48 E-value=0.019 Score=61.15 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..+.|.||+|+||||+++.|+..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566899999999999999999999886
No 304
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.45 E-value=0.018 Score=61.77 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=27.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
..+++.||+|+|||++|+.||+.++ ...++++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN--GEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT--EEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC--Cceecccc
Confidence 3688999999999999999999987 34455544
No 305
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.41 E-value=0.025 Score=63.52 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..++|+||+|+||||+++.|+..+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 3566899999999999999999999874
No 306
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.37 E-value=0.021 Score=59.61 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.++..++|+||||+|||||++.++..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999999765
No 307
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.32 E-value=0.028 Score=56.82 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=25.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
..+.|.||||+||||+++.|++.++.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 35789999999999999999999976655
No 308
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.29 E-value=0.02 Score=56.31 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.+..++|.||||+|||++|..+++..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 456799999999999999999998764
No 309
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.29 E-value=0.015 Score=56.16 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=27.5
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCC---eEEEecCC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRK---FIRISLGG 375 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~---~~~i~~~~ 375 (828)
+.+.++||+|+|||||++.|+..+... ...+.+++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 367899999999999999999998544 66666554
No 310
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.29 E-value=0.026 Score=59.20 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
..+.|+|+||+||||+++.|+ .+|.++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~ 102 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYI 102 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEE
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcE
Confidence 368899999999999999999 466543
No 311
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.27 E-value=0.017 Score=64.16 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.+..++|+|+||+||||+++.+++.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4567889999999999999999988754
No 312
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.27 E-value=0.022 Score=59.38 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+.++||+|+|||||.++|+.........+.+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g 37 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNRE 37 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCC
Confidence 5789999999999999999998866555554443
No 313
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.22 E-value=0.021 Score=60.30 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l 364 (828)
..++|.|+||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999999864
No 314
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.19 E-value=0.012 Score=58.69 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
.+.|.|++|+||||+++.|++.++..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999998543
No 315
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.19 E-value=0.035 Score=62.02 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..++|.||+|||||||++.|++......+.+.+.+
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G 192 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG 192 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence 57888999999999999999999999977776666554
No 316
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.18 E-value=0.065 Score=60.70 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=28.5
Q ss_pred CcEEEEecCCCC--CCCccccCceE-EEEcCCCCHHHHHHHHHH
Q 003349 456 KVIFVATANRAQ--PIPPPLLDRME-VIELPGYTPEEKLRIAMR 496 (828)
Q Consensus 456 ~viiI~TtN~~~--~l~~aLl~R~~-~i~~~~~~~ee~~~Il~~ 496 (828)
++.+|++|.++. .++..+++-|. .|.|..-+..+...|+..
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred CcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 455666666665 67877877774 577887788877776643
No 317
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.17 E-value=0.037 Score=59.85 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
.+|..+.|.||+|+|||||++.|++........+.+
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~ 104 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLAL 104 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 478899999999999999999999998766655543
No 318
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.12 E-value=0.38 Score=50.60 Aligned_cols=36 Identities=31% Similarity=0.304 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 375 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 375 (828)
+..++++|++|+||||++..+|..+ +.....+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5678899999999999999999877 55566666543
No 319
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.12 E-value=0.053 Score=54.96 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIA 361 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la 361 (828)
+..+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 5679999999999998766554
No 320
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.07 E-value=0.1 Score=66.39 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
+|..+.++||+|+||||+++.|.+.+...-+.+.+++
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG 479 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC
Confidence 5667899999999999999999999987777766554
No 321
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.06 E-value=0.037 Score=64.18 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=50.1
Q ss_pred cccEEEEccCCCCCCCCchhHHHHHHHHHHhccC-CCCCCCEEEEeecCCCceeeecCCHHHHHH---HHHHcCCCEEee
Q 003349 706 GRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSR-KRVRADTAMTGEMTLRGLVLPVGGVKDKIL---AAHRYGIKRVIL 781 (828)
Q Consensus 706 ~~dv~i~~~~~~~~~~g~sa~laia~ai~sa~~~-~~~~~~~~~~Gei~L~G~v~~v~gi~~ki~---~A~~~G~k~vii 781 (828)
+.-+.||...|..+.++- +.-+=+--+.++.+ .-.|++.++++-+-+. -.-.|-.+.+. ..++.|++++||
T Consensus 446 ~~~lll~pl~G~tk~~di--~~~~r~~~~~~~~~~~y~p~~~~~l~~~p~~---mryaGPrEa~~hai~rkN~Gcth~IV 520 (630)
T 1x6v_B 446 RPVLLLHPLGGWTKDDDV--PLMWRMKQHAAVLEEGVLNPETTVVAIFPSP---MMYAGPTEVQWHCRARMVAGANFYIV 520 (630)
T ss_dssp SEEEEEEEBCSCCCTTSC--CHHHHHHHHHHHHHTTSSCGGGEEECCBCCC---CCCCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCcEEEEeCcCCCCCCCC--CHHHHHHHHHHHHHcCCCCCcceEEeeccch---hhhcCcHHHHHHHHHHHhCCCCeEEE
Confidence 335899987777766664 44455566667666 3578888888766552 33566676654 456799999999
Q ss_pred ccc
Q 003349 782 PER 784 (828)
Q Consensus 782 P~~ 784 (828)
=.+
T Consensus 521 Grd 523 (630)
T 1x6v_B 521 GRD 523 (630)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 322
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.05 E-value=0.13 Score=54.84 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLG 374 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~ 374 (828)
.++..++++||+|+||||++..+|..+ +.....++++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345689999999999999999999877 4445555443
No 323
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.02 E-value=0.048 Score=58.37 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.++..++++||||+|||+++..+|...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 467789999999999999999999875
No 324
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.00 E-value=0.068 Score=62.96 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCchhHHHH-HHHHHh--CCCeEEEecC
Q 003349 341 PVLCFVGPPGVGKTSLAS-SIASAL--GRKFIRISLG 374 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~-~la~~l--~~~~~~i~~~ 374 (828)
+..|+.||||||||+++- .++..+ +.+...+..+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 468899999999997654 444444 4444444443
No 325
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.92 E-value=0.1 Score=51.05 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=25.9
Q ss_pred CCCeEEEEcCCCCchh-HHHHHHHHHh--CCCeEEEe
Q 003349 339 RGPVLCFVGPPGVGKT-SLASSIASAL--GRKFIRIS 372 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT-~la~~la~~l--~~~~~~i~ 372 (828)
.+...+++||.|+||| .|.+++.+.. +.....+.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 4567889999999999 8888887755 44555554
No 326
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.86 E-value=0.025 Score=61.85 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=24.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
+.+++.||+|+|||+|+..||+.++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~i 30 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEV 30 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeE
Confidence 4678999999999999999999987543
No 327
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.84 E-value=0.062 Score=54.52 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh----CCCeEEEecC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLG 374 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l----~~~~~~i~~~ 374 (828)
.+|..++++|+||+|||++|..+|... +.+...+++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 467889999999999999998876432 4555555543
No 328
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.83 E-value=0.068 Score=51.32 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEec
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISL 373 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~ 373 (828)
.+.+.|.|++|+||||++..++..+ +.....+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 3578899999999999999999876 344555543
No 329
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.78 E-value=0.022 Score=66.22 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.++||+|+|||||++.++..+...-+.+.+.+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 46778999999999999999999999877666676655
No 330
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.73 E-value=0.024 Score=54.99 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.6
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCeEEEecC
Q 003349 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLG 374 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~~~~~~i~~~ 374 (828)
++++|++|+|||++|..++.. +.+.+.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999999999977 7666666543
No 331
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.72 E-value=0.043 Score=59.39 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+|..+.|+||||+|||||++.++..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999999887
No 332
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.61 E-value=0.059 Score=58.17 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.++..++++||||+|||+++..+|...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999863
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.61 E-value=0.042 Score=53.10 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
..+|+||+|+||||++++|+..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7789999999999999999998853
No 334
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.52 E-value=0.12 Score=66.53 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 375 (828)
.++..++|+||||+|||+||..+|..+ +.++..+++..
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee 770 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 466789999999999999999998765 33555555544
No 335
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.40 E-value=0.046 Score=55.10 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeE
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFI 369 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~ 369 (828)
..++.+.|++|||||++++.||+.++.+++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 457889999999999999999999988765
No 336
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.36 E-value=0.043 Score=63.77 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
+|..+.++||+|+|||||++.++..+...-+.+.+.+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 5678999999999999999999999887778777666
No 337
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.24 E-value=0.045 Score=63.83 Aligned_cols=38 Identities=34% Similarity=0.503 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.++||+|+|||||++.++..+...-+.+.+.+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 405 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDG 405 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECC
Confidence 35678999999999999999999999887778887766
No 338
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.10 E-value=0.056 Score=52.26 Aligned_cols=34 Identities=35% Similarity=0.425 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEec
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISL 373 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~ 373 (828)
.+.+.|.||+|+||||+++.+...+ +.....+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 3578899999999999999999875 334444443
No 339
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.06 E-value=0.05 Score=63.40 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.++||+|+||||+++.++..+...-+.+.+.+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 416 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC
Confidence 35678999999999999999999999988778777666
No 340
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.99 E-value=0.93 Score=50.28 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh----CCCeEEEecCCcC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISLGGVK 377 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l----~~~~~~i~~~~~~ 377 (828)
++.+++++|++|+||||++..||..+ |.....++++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 34578899999999999999999776 5667777776543
No 341
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.95 E-value=0.026 Score=65.73 Aligned_cols=38 Identities=21% Similarity=0.423 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 376 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~ 376 (828)
+|..+.++||+|+||||+++.++..+...-+.+.+.+.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~ 405 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCE
Confidence 56789999999999999999999999888888877764
No 342
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.92 E-value=0.18 Score=54.66 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLG 374 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~ 374 (828)
....+.|+|+||+||||++..++..+ +.....+++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 44578999999999999999999876 5555555544
No 343
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.92 E-value=0.045 Score=60.43 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 319 VRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 319 ~~~~~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++...+.+++..... .+..+.|.||+|+|||||.++|+....
T Consensus 52 ~~~~~~i~~~L~~~~~----~~~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 52 QLTNSAISDALKEIDS----SVLNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp HHHHHHHHHHHHHHHH----CCEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred cccchhhhhhhhhccc----CCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3444555555554332 345788999999999999999998654
No 344
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.91 E-value=0.048 Score=59.41 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCe
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKF 368 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~ 368 (828)
+..+.++||+|+|||||++.|+..+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 56789999999999999999999986543
No 345
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.044 Score=61.57 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=24.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+|+.+++.||+|+|||||++.|+..+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 367889999999999999999999876
No 346
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.82 E-value=0.095 Score=60.55 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC----CCeEEEe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG----RKFIRIS 372 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~----~~~~~i~ 372 (828)
.+..++|.|+||+||||+|++|++.++ .+++.++
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 455788999999999999999999886 5666665
No 347
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.78 E-value=0.057 Score=58.15 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.++..+.|.||||+|||||.++++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 466789999999999999999999877
No 348
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.72 E-value=0.1 Score=55.47 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+|..+++.|+||+|||+++..+|...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578889999999999999999998654
No 349
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.65 E-value=0.46 Score=53.29 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=26.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
..+++++|+|+|||..+-.++..++.+...+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~ 140 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence 35889999999999999888877776666554
No 350
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.65 E-value=0.041 Score=63.22 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=25.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.++..+.|+|++|+||||++++|++.++.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 35678999999999999999999999853
No 351
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=92.64 E-value=0.087 Score=44.42 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHhhcHHHHHhcCCCCcccccCHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 482 LPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 482 ~~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
-.+|+.++|.+|++.++.+. .+. ++..++.|++.+.+++| +.|..+|++|++.++++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~----------~l~-~dvdl~~LA~~T~G~SG-----ADL~~l~~eAa~~alr~ 64 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKM----------NLT-RGINLRKIAELMPGASG-----AEVKGVCTEAGMYALRE 64 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTS----------EEC-TTCCCHHHHHTCSSCCH-----HHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHcCC----------CCC-cccCHHHHHHHcCCCCH-----HHHHHHHHHHHHHHHHH
Confidence 46899999999999987421 111 12225667777778888 89999999999999987
No 352
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.64 E-value=0.065 Score=60.75 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.+.++.|.|.+||||||++++||+.++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999975
No 353
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.61 E-value=0.055 Score=59.60 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.++..++|+||||+|||||++.++-..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 567899999999999999999887443
No 354
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.59 E-value=0.057 Score=51.74 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
.+..+||.|+||+||||+|..+.+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4668999999999999999998873
No 355
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.59 E-value=0.042 Score=63.84 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.++||+|+||||+++.++..+...-+.+.+.+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 402 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG 402 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC
Confidence 35678999999999999999999999988778887766
No 356
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.58 E-value=0.11 Score=51.82 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.+.++++|++|+||||++..++..+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999987643
No 357
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.57 E-value=0.13 Score=56.88 Aligned_cols=91 Identities=19% Similarity=0.121 Sum_probs=47.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCcCchhhhccCcccc---c--ccCcchHHHHHHhcCCC----C
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTY---I--GSMPGRLIDGLKRVGVC----N 408 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~~~~~~l~g~~~~~---v--g~~~g~l~~~~~~~~~~----~ 408 (828)
......++.|+||||||+++..++.. .....+..+... ..++....... . ......+...+...... .
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~--~~~lVlTpT~~a-a~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~ 235 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF--EEDLILVPGRQA-AEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQF 235 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT--TTCEEEESCHHH-HHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc--CCeEEEeCCHHH-HHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcC
Confidence 34457889999999999998877642 344444433321 11221110000 0 00111233333332221 3
Q ss_pred cEEEEecccccCCCCCCChHHHHHHhc
Q 003349 409 PVMLLDEIDKTGSDVRGDPASALLEVL 435 (828)
Q Consensus 409 ~vl~iDEid~l~~~~~~~~~~~Ll~~l 435 (828)
.++++||+-.++... ...++..+
T Consensus 236 d~liiDE~sm~~~~~----l~~l~~~~ 258 (446)
T 3vkw_A 236 KRLFIDEGLMLHTGC----VNFLVEMS 258 (446)
T ss_dssp SEEEEETGGGSCHHH----HHHHHHHT
T ss_pred CEEEEeCcccCCHHH----HHHHHHhC
Confidence 599999999876443 44555544
No 358
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.53 E-value=0.14 Score=57.88 Aligned_cols=38 Identities=34% Similarity=0.416 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCCc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGV 376 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~~ 376 (828)
++.+++|+|+||+||||++..||..+ |.....++++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 34578999999999999999999776 666777776543
No 359
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.49 E-value=0.073 Score=53.78 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
+|..+.|.||+|+||||+++.+++.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 566788999999999999999999883
No 360
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.45 E-value=0.068 Score=53.46 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
++..+.|.|++|+||||+++.+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4667889999999999999999998843
No 361
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.42 E-value=0.2 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.193 Sum_probs=17.2
Q ss_pred CeEEEEcCCCCchhHHHH-HHHHH
Q 003349 341 PVLCFVGPPGVGKTSLAS-SIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~-~la~~ 363 (828)
..+++.+|+|+|||..+- .+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 568899999999998643 33344
No 362
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=92.42 E-value=0.13 Score=42.23 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHhhcHHHHHhcCCCCccccc-CHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 003349 483 PGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQI-PEAMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQ 554 (828)
Q Consensus 483 ~~~~~ee~~~Il~~~l~~~~~~~~~~~~~~~~i-~~~~l~~l~~~~~~~~g~R~l~~~i~~l~~~a~~~~l~~ 554 (828)
|.|+.++|.+|++.++.+ ..+ ++..+..|+..+.+.+| +.|.++|++|++.++++
T Consensus 1 plPd~~~R~~Il~~~l~~------------~~~~~~~dl~~la~~t~G~SG-----ADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRK------------MNLTRGINLRKIAELMPGASG-----AEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTT------------SEECTTCCHHHHHHTCTTCCH-----HHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcC------------CCCCCccCHHHHHHHcCCCCH-----HHHHHHHHHHHHHHHHh
Confidence 578999999999988642 112 22346778887778888 89999999999999987
No 363
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.36 E-value=0.084 Score=60.30 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
..++|+|.||+||||+++.|++.++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999884
No 364
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.36 E-value=0.36 Score=47.96 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=14.3
Q ss_pred CeEEEEcCCCCchhHH
Q 003349 341 PVLCFVGPPGVGKTSL 356 (828)
Q Consensus 341 ~~lLL~GppGtGKT~l 356 (828)
..+++.+|+|+|||..
T Consensus 52 ~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 4689999999999976
No 365
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.31 E-value=0.13 Score=51.44 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEE
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRI 371 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i 371 (828)
+|..+.|.|++|+||||+++.+++.++.+...+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 466788999999999999999999997644333
No 366
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.29 E-value=0.099 Score=55.23 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.++ .++++||||+|||+|+..++...
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 456 78999999999999988777554
No 367
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.29 E-value=0.067 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q 003349 342 VLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l 364 (828)
.+++.||+|+|||||++.++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999999753
No 368
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.27 E-value=0.064 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q 003349 342 VLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l 364 (828)
.++|.||+|+|||||++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999999865
No 369
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.20 E-value=0.082 Score=53.73 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..+.|.|++|+||||+++.+++.+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567889999999999999999999874
No 370
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.19 E-value=0.6 Score=45.59 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=15.1
Q ss_pred CeEEEEcCCCCchhHHHH
Q 003349 341 PVLCFVGPPGVGKTSLAS 358 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~ 358 (828)
..+++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 568999999999997544
No 371
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.15 E-value=0.069 Score=54.30 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
+..+.|.|++|+||||+++.|++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999999984
No 372
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.08 E-value=0.059 Score=61.79 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHH--HHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASS--IASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~--la~~l 364 (828)
.+|..++|+||||+|||||+++ ++...
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999999 55655
No 373
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.04 E-value=0.058 Score=60.66 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=28.2
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
..+.|.||+|+|||||+++|+..+...-+.+.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 78899999999999999999999865544444433
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.99 E-value=0.095 Score=51.99 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.....++++|++|+|||+|+.+++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998754
No 375
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.91 E-value=0.059 Score=56.99 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEec
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISL 373 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~ 373 (828)
+..+.|.||||+|||||+++|+.........+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 4578899999999999999999877655555543
No 376
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.70 E-value=0.17 Score=56.84 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=28.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh----CCCeEEEec
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISL 373 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l----~~~~~~i~~ 373 (828)
.+|..+++.|+||+|||+++..+|..+ +.+...+++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 577889999999999999999998765 334555543
No 377
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.63 E-value=0.07 Score=61.16 Aligned_cols=35 Identities=23% Similarity=0.505 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~ 372 (828)
.+|..+.|.||+|+|||||+++|+..+...-+.+.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 326 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVT 326 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 36789999999999999999999998765544444
No 378
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.49 E-value=0.078 Score=56.53 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.++..++++||||+|||+++..+|...
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999763
No 379
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.46 E-value=0.093 Score=48.88 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.+++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 380
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.40 E-value=0.16 Score=53.49 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLG 374 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~ 374 (828)
++..+.++|++|+||||++..+|..+ +.....+++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45688899999999999999999887 3444545443
No 381
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.36 E-value=0.063 Score=54.28 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
.+|..+.|.||.|+||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45668899999999999999999987
No 382
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.33 E-value=0.096 Score=49.53 Aligned_cols=21 Identities=24% Similarity=0.678 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~ 362 (828)
.+++.|+||+|||||.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999985
No 383
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.30 E-value=0.11 Score=56.29 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
++..+.|+||||+|||||+++|+....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 356789999999999999999997654
No 384
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.27 E-value=0.091 Score=60.30 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.+|..+.|+||+|+|||||+++|+..+.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5788999999999999999999998763
No 385
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.26 E-value=0.12 Score=51.54 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
+|..+.|.|++|+||||.++.+++.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999999883
No 386
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.26 E-value=0.094 Score=57.95 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=22.4
Q ss_pred CCCCe--EEEEcCCCCchhHHHHHHHHH
Q 003349 338 ARGPV--LCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 338 ~~~~~--lLL~GppGtGKT~la~~la~~ 363 (828)
.+|.. +.|+||+|+|||||+++|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 45666 899999999999999999875
No 387
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.23 E-value=0.18 Score=53.97 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=28.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEec
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISL 373 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~ 373 (828)
.++..+++.|+||+|||+++..+|..+ +.+...+++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 577889999999999999999998765 344444443
No 388
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.22 E-value=0.11 Score=59.64 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+|..+++.||||+|||||+++++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999999875
No 389
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.17 E-value=0.086 Score=50.86 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~ 362 (828)
.+++.|+||+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 390
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.11 E-value=0.15 Score=48.38 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=21.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHH
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~ 362 (828)
.+...++++|++|+|||+|+.++..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3556799999999999999999875
No 391
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.10 E-value=0.2 Score=56.01 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=27.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh----CCCeEEEec
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL----GRKFIRISL 373 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l----~~~~~~i~~ 373 (828)
.+|..+++.|+||+|||+++..+|... +.+...+++
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 567889999999999999999998754 334454443
No 392
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.07 E-value=0.13 Score=51.87 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.++..+.|.|++|+||||+++.+++.++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34567889999999999999999998754
No 393
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.03 E-value=0.076 Score=56.17 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
+..+.|.||+|+|||||+++|+ .....
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~ 191 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELR 191 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCc
Confidence 5678899999999999999999 65443
No 394
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.01 E-value=0.12 Score=55.91 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+..+.|+|+||+|||||..+++..+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999999865
No 395
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.98 E-value=0.049 Score=56.26 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
++..+.|.|++|+||||+++.|++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445788999999999999999999884
No 396
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.96 E-value=0.051 Score=53.59 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
.++..++|+|++|+|||||+++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45667999999999999999988743
No 397
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.94 E-value=0.13 Score=48.12 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l 364 (828)
...+++||+|+|||++..+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999766
No 398
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.89 E-value=0.13 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 399
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.85 E-value=0.42 Score=47.70 Aligned_cols=19 Identities=37% Similarity=0.323 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCCchhHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLAS 358 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~ 358 (828)
+..+++.+|+|+|||..+.
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4568999999999997543
No 400
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.80 E-value=0.35 Score=58.84 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~ 362 (828)
+..++|+||+|+||||+.++++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999954
No 401
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.78 E-value=0.11 Score=49.72 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~ 363 (828)
+..++|+|+||+|||||.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999864
No 402
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.76 E-value=0.13 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.+++.|+||+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998864
No 403
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=90.74 E-value=0.59 Score=49.93 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..+++.+|+|+|||..+-..+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 57889999999999886554433
No 404
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.72 E-value=0.12 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.600 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~ 362 (828)
..++|.|++|+|||||+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999986
No 405
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=90.71 E-value=0.22 Score=60.45 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
.+..++|+||+|+||||+.++++..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Confidence 4568999999999999999998854
No 406
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.53 E-value=0.13 Score=47.80 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.+++.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 407
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.49 E-value=0.2 Score=54.31 Aligned_cols=29 Identities=41% Similarity=0.597 Sum_probs=25.7
Q ss_pred CCCCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 336 PDARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 336 ~~~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
+-.+|..++++||||||||+|++.|++..
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 44578899999999999999999999876
No 408
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.47 E-value=0.13 Score=48.61 Aligned_cols=22 Identities=55% Similarity=0.739 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~ 362 (828)
..+++.|+||+|||+|++.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3588999999999999998874
No 409
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.46 E-value=0.14 Score=59.97 Aligned_cols=24 Identities=42% Similarity=0.733 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l 364 (828)
+..++.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999887776654
No 410
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.38 E-value=0.16 Score=50.48 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCeEE
Q 003349 342 VLCFVGPPGVGKTSLASSIASALGRKFIR 370 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l~~~~~~ 370 (828)
.+.|+|..||||||+++.+++ +|.+++.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vid 38 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVD 38 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEE
Confidence 588999999999999999998 7776654
No 411
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.38 E-value=0.15 Score=47.62 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..+++.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36889999999999999999864
No 412
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.35 E-value=0.15 Score=47.80 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q 003349 342 VLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l 364 (828)
.+++.|++|+|||+|++++...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998653
No 413
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.33 E-value=0.15 Score=47.76 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998754
No 414
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.32 E-value=0.047 Score=57.82 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
++..+.|.||||+|||||+++|+......
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 35689999999999999999998765433
No 415
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.28 E-value=0.14 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
+..++|+|.||+||||+++.+++.++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34788999999999999999999875
No 416
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.27 E-value=0.16 Score=49.11 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHH
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~ 362 (828)
.....++++|++|+|||+|+.++..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456799999999999999999874
No 417
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.25 E-value=0.16 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999754
No 418
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.23 E-value=0.11 Score=59.59 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.9
Q ss_pred CCCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 337 DARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 337 ~~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
..+|..+.|+||+|+|||||+++|+..+..
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 356778999999999999999999987643
No 419
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.19 E-value=0.23 Score=54.93 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEecCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGG 375 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 375 (828)
++..++++||+|+||||++..+|..+ +.....+++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 45678899999999999999999887 34455555443
No 420
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.17 E-value=0.33 Score=48.28 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCchhH-HHHHHHHHh--CCCeEEEe
Q 003349 338 ARGPVLCFVGPPGVGKTS-LASSIASAL--GRKFIRIS 372 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~-la~~la~~l--~~~~~~i~ 372 (828)
..|...+++||-|+|||| |.+.+-+.. +.....+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 456678899999999999 555544433 45555444
No 421
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.15 E-value=0.16 Score=47.68 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|++++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.15 E-value=0.1 Score=59.97 Aligned_cols=29 Identities=34% Similarity=0.648 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
+|..+.|.||+|+|||||+++|+..+...
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~ 339 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPT 339 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 67899999999999999999999877443
No 423
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.08 E-value=0.13 Score=59.66 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
.+|..+.|.||+|+|||||++.|+..+..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 46889999999999999999999987744
No 424
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.04 E-value=0.17 Score=48.16 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 425
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.02 E-value=0.15 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999753
No 426
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=89.96 E-value=0.24 Score=51.77 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhCCCCCCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 323 QRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 323 ~~l~~~l~~~~~~~~~~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
..+.+.+......+....+.++++|.||+|||||..++...
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 34444443332333345567999999999999999999754
No 427
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.91 E-value=0.15 Score=47.85 Aligned_cols=21 Identities=38% Similarity=0.700 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~ 362 (828)
.+++.|+||+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999863
No 428
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.90 E-value=0.038 Score=55.88 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.8
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 343 LCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 343 lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
++++||+|+||||++++|+..+...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcccccC
Confidence 4588999999999999999998654
No 429
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=89.90 E-value=0.33 Score=48.94 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=15.0
Q ss_pred CeEEEEcCCCCchhHHHH
Q 003349 341 PVLCFVGPPGVGKTSLAS 358 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~ 358 (828)
..+++.+|+|+|||..+-
T Consensus 68 ~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 468899999999997643
No 430
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.90 E-value=0.28 Score=50.10 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHh--CCCeEEEecC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASAL--GRKFIRISLG 374 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l--~~~~~~i~~~ 374 (828)
...+++.|.+|+||||++..++..+ +.....+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4478899999999999999999877 4555566644
No 431
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.87 E-value=0.16 Score=48.29 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~ 363 (828)
...+++.|++|+|||+|++++...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999999999865
No 432
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.86 E-value=0.17 Score=47.22 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.+++.|++|+|||+|++++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999863
No 433
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.85 E-value=0.18 Score=48.51 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
....+++.|++|+|||+|+.++...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999998754
No 434
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.80 E-value=0.25 Score=55.21 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
.+|..+++.|+||+|||+++..+|...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 577889999999999999999998765
No 435
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.80 E-value=0.18 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|+.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999863
No 436
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.78 E-value=0.27 Score=52.83 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHh
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l 364 (828)
..+..+.+.|+||+||||++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456788999999999999999999876
No 437
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.77 E-value=0.18 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q 003349 342 VLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l 364 (828)
.+++.|++|+|||+|+..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997643
No 438
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.75 E-value=0.18 Score=47.43 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~ 362 (828)
...+++.|++|+|||+|+.++..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999975
No 439
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.70 E-value=0.17 Score=47.41 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchhHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~ 362 (828)
.+++.|++|+|||+|+.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999999885
No 440
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.64 E-value=0.32 Score=53.33 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHh---CCCeEEEec
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASAL---GRKFIRISL 373 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l---~~~~~~i~~ 373 (828)
.++++++.||+|+|||++++.++..+ +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999999999999999998765 444445543
No 441
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.55 E-value=0.18 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 442
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.51 E-value=0.11 Score=60.35 Aligned_cols=29 Identities=34% Similarity=0.648 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
+|..+.|.||+|+|||||+++|+..+...
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~ 409 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPT 409 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 67889999999999999999999877443
No 443
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.49 E-value=0.15 Score=47.72 Aligned_cols=20 Identities=40% Similarity=0.753 Sum_probs=18.3
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIA 361 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la 361 (828)
.++++|+||+|||+|++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58899999999999999885
No 444
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.28 E-value=0.63 Score=45.38 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=44.9
Q ss_pred eEEEE-cCCCCchhHHHHHHHHHh---CCCeEEEecCCcCchhhhccCcc---cccccCcchHHHHHHhcCCCCcEEEEe
Q 003349 342 VLCFV-GPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRR---TYIGSMPGRLIDGLKRVGVCNPVMLLD 414 (828)
Q Consensus 342 ~lLL~-GppGtGKT~la~~la~~l---~~~~~~i~~~~~~~~~~l~g~~~---~~vg~~~g~l~~~~~~~~~~~~vl~iD 414 (828)
.+.++ +..|+||||++..+|..+ |.+...++++.........+... ..+......+.+.+........++++|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD 82 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD 82 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence 35555 568899999999998877 67788888765444333322211 111112244555555544445688888
Q ss_pred cc
Q 003349 415 EI 416 (828)
Q Consensus 415 Ei 416 (828)
=-
T Consensus 83 ~~ 84 (206)
T 4dzz_A 83 GA 84 (206)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 445
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.25 E-value=0.2 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~ 362 (828)
...+++.|+||+|||+|++.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999986
No 446
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.19 E-value=0.21 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l 364 (828)
..++++|++|+|||+|++.+...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998643
No 447
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.19 E-value=0.2 Score=48.37 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|++.+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 448
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.18 E-value=0.2 Score=48.17 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|+..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 449
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.17 E-value=0.18 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999864
No 450
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.15 E-value=0.2 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchhHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~ 362 (828)
..+++.|+||+|||+|++.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3688999999999999999874
No 451
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.10 E-value=0.2 Score=47.45 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999853
No 452
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.09 E-value=0.21 Score=47.74 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.+++.|++|+|||+|+.++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 453
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.07 E-value=0.21 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
...++++|++|+|||||+..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45688999999999999999998764
No 454
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.06 E-value=0.62 Score=47.04 Aligned_cols=18 Identities=28% Similarity=0.106 Sum_probs=15.2
Q ss_pred CeEEEEcCCCCchhHHHH
Q 003349 341 PVLCFVGPPGVGKTSLAS 358 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~ 358 (828)
..+++.+|+|+|||..+.
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 468899999999998643
No 455
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.03 E-value=0.16 Score=59.17 Aligned_cols=28 Identities=39% Similarity=0.559 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.+|..+.|.||+|+|||||++.|+..+.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 5778999999999999999999998764
No 456
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.00 E-value=0.16 Score=64.57 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=33.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCCc
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 376 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~~ 376 (828)
+|..+.++||+|+|||||++.|+..+...-+.+.+.+.
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 56789999999999999999999999888888887764
No 457
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.98 E-value=0.22 Score=47.32 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|++++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 458
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.90 E-value=0.22 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36899999999999999999864
No 459
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.88 E-value=0.21 Score=48.29 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~ 363 (828)
...++++|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
No 460
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.83 E-value=0.22 Score=59.94 Aligned_cols=24 Identities=42% Similarity=0.733 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l 364 (828)
+.+++.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 568899999999999887776654
No 461
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.80 E-value=0.21 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 462
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.79 E-value=0.23 Score=47.17 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..+++.|++|+|||+|+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998764
No 463
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.79 E-value=0.21 Score=47.38 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~ 362 (828)
..++++|++|+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998864
No 464
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.73 E-value=0.23 Score=47.39 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 465
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.73 E-value=0.24 Score=48.96 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 341 PVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
...+++||+|+|||++..+|.-.++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 46789999999999999999977743
No 466
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=88.72 E-value=0.27 Score=56.38 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhC---CCeEEEe
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALG---RKFIRIS 372 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~---~~~~~i~ 372 (828)
.+..++|+|+||+||||+++.|++.++ .++..++
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 345788999999999999999999874 3445444
No 467
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.68 E-value=0.27 Score=46.73 Aligned_cols=25 Identities=40% Similarity=0.275 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
+...++++|++|+|||+|+.++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998853
No 468
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.65 E-value=0.23 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999887764
No 469
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.61 E-value=0.24 Score=47.26 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.+++.|++|+|||+|++.+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998753
No 470
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=88.55 E-value=0.84 Score=54.29 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCCchhHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLAS 358 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~ 358 (828)
+.+++++||+|+|||+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5789999999999999873
No 471
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.49 E-value=0.24 Score=47.67 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|+..+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 472
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.48 E-value=0.23 Score=47.86 Aligned_cols=23 Identities=30% Similarity=0.350 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q 003349 342 VLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l 364 (828)
.+++.|+||+|||+|++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999998887755
No 473
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.48 E-value=0.21 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++|.|+||+|||||..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999754
No 474
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.47 E-value=0.24 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999988764
No 475
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.46 E-value=0.19 Score=47.81 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
-.+++.|++|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999864
No 476
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=88.45 E-value=0.47 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..+.|.|+||+|||||.++++..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999865
No 477
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.44 E-value=0.17 Score=61.59 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
.+|..+.|.||+|+|||||++.|+..+...-+.+.+.+
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 36778999999999999999999998877777776543
No 478
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.35 E-value=0.34 Score=55.05 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHhC
Q 003349 338 ARGPVLCFVGPPGVGKTSLASSIASALG 365 (828)
Q Consensus 338 ~~~~~lLL~GppGtGKT~la~~la~~l~ 365 (828)
.++..+++.|+||+|||+++..+|....
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 5778899999999999999999987663
No 479
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.33 E-value=0.21 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.+++.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998753
No 480
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.31 E-value=0.23 Score=48.39 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~ 363 (828)
...++++|++|+|||+|+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999999998754
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.30 E-value=0.21 Score=58.00 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHhCC
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASALGR 366 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~l~~ 366 (828)
|..+.|.||+|+|||||+++|+..+..
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 367899999999999999999988743
No 482
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.18 E-value=0.27 Score=47.78 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~ 363 (828)
...++++|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 483
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.14 E-value=0.26 Score=47.53 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|++++...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 484
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.11 E-value=0.25 Score=47.81 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|+..+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 485
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.03 E-value=0.24 Score=47.57 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
....++++|++|+|||+|.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999988743
No 486
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.99 E-value=0.28 Score=48.29 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHH
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~ 363 (828)
+...+++.|++|+|||+|+..+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999864
No 487
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=87.98 E-value=0.27 Score=47.35 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|+..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 488
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.98 E-value=0.28 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|+..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998753
No 489
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.97 E-value=0.26 Score=46.95 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIAS 362 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~ 362 (828)
..++++|++|+|||+|+..+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999884
No 490
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=87.95 E-value=0.53 Score=55.81 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCCchhHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLAS 358 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~ 358 (828)
+.++++.||+|+|||+.+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5679999999999999874
No 491
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.93 E-value=0.24 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHHh
Q 003349 342 VLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~l 364 (828)
.++++|++|+|||+|++.+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998765
No 492
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=87.93 E-value=0.28 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|+.++...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 493
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=87.89 E-value=0.28 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|++|+|||+|+..+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 494
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=87.88 E-value=1.7 Score=53.64 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=25.3
Q ss_pred cchHHHHHHhcCC---CCcEEEEecccccCCCCCCChHHHHHHhcC
Q 003349 394 PGRLIDGLKRVGV---CNPVMLLDEIDKTGSDVRGDPASALLEVLD 436 (828)
Q Consensus 394 ~g~l~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~Ll~~ld 436 (828)
++.+...+..... .-.+++|||+|.+.....+.....++..+.
T Consensus 131 pe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 131 TEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp HHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred HHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 4556555544321 123899999998876544444555555543
No 495
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=87.88 E-value=0.32 Score=54.06 Aligned_cols=29 Identities=28% Similarity=0.591 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRK 367 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~ 367 (828)
.+...+|+||+|+|||++..+|+..++..
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 35678999999999999999999988643
No 496
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=87.84 E-value=0.24 Score=62.92 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHhCCCeEEEecCC
Q 003349 339 RGPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGG 375 (828)
Q Consensus 339 ~~~~lLL~GppGtGKT~la~~la~~l~~~~~~i~~~~ 375 (828)
+|..+.++||+|+|||||++.|+..+...-+.+.+++
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g 451 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 5678999999999999999999999877777766554
No 497
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=87.83 E-value=0.29 Score=47.81 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHh
Q 003349 341 PVLCFVGPPGVGKTSLASSIASAL 364 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~l 364 (828)
..++++|++|+|||+|+..+...-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998643
No 498
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=87.81 E-value=0.28 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchhHHHHHHHHH
Q 003349 341 PVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 341 ~~lLL~GppGtGKT~la~~la~~ 363 (828)
..++++|++|+|||+|++.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 499
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=87.81 E-value=0.27 Score=47.81 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 003349 342 VLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 342 ~lLL~GppGtGKT~la~~la~~ 363 (828)
.++++|+||+|||+|...++..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999854
No 500
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.76 E-value=0.29 Score=47.71 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHH
Q 003349 340 GPVLCFVGPPGVGKTSLASSIASA 363 (828)
Q Consensus 340 ~~~lLL~GppGtGKT~la~~la~~ 363 (828)
...++++|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999999753
Done!