BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003353
         (827 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa]
 gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa]
          Length = 785

 Score = 1380 bits (3573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/779 (84%), Positives = 717/779 (92%), Gaps = 2/779 (0%)

Query: 45  TSFSSRLDYGETQNFVKDAIFFRKPNYVRSYCSGKSGDGEKCNEWTEEIEYLDESGSVIY 104
            S S ++   ++ N V +    +  ++VR+YC+GK+G+     EWTE+IEYLDESGSVIY
Sbjct: 4   NSISPKVSPSKSPNLVSNGGHVKANSFVRNYCAGKNGEA-GSGEWTEDIEYLDESGSVIY 62

Query: 105 TGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKM 164
           +GKGIRSVEPG DDHVM+GG+KKP LNASAVAKIVEVV RWKWGPELETQLDKLQFVP M
Sbjct: 63  SGKGIRSVEPGVDDHVMIGGLKKPILNASAVAKIVEVVKRWKWGPELETQLDKLQFVPNM 122

Query: 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV 224
            H+ QALK+IN+SD  LSLF+WAKRQ+WYVP DECYVMLFD LN+SRDFDG+ SLFDEMV
Sbjct: 123 THVVQALKIINESDALLSLFKWAKRQTWYVPNDECYVMLFDGLNQSRDFDGIQSLFDEMV 182

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
            DS K+    FSAYNRV++YLAKA+KLE+S+CCFKKV DS CKIDT++YN+LM LFLNKG
Sbjct: 183 CDSIKSATQ-FSAYNRVLKYLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKG 241

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           LPYKAFEIYE+ME   CSLD STYELMIPSLAKSGRLDAA KLFQEMKERNFRPS  IF+
Sbjct: 242 LPYKAFEIYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFS 301

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           SLVDSMGKAGRL+TSMKVYMEMQG G RPSA MYVSLIESY KAGKLD ALRLWDEM+IA
Sbjct: 302 SLVDSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIA 361

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           GFRPNFGL+T+IIESHAKSGKLDIAMSIF DME+AGFLPTPSTYS LLEMHA+SGQVD+A
Sbjct: 362 GFRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAA 421

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
           MKLYNSMT+AGLRPGLSTYTALLTLLA +KLVDVAAKILLEMK MG+SVDVSASDVLMVY
Sbjct: 422 MKLYNSMTNAGLRPGLSTYTALLTLLAHKKLVDVAAKILLEMKAMGFSVDVSASDVLMVY 481

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
           IKDGSVD +LRWLRFM SSGIRTNNFI+RQLFESCMKN LYESAKPLLETYV SAAKVDL
Sbjct: 482 IKDGSVDLSLRWLRFMSSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDL 541

Query: 585 VLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFH 644
           +LYTS+LA+LVRCQ+EQNERHLMAILSAT+HKAHAF+CGLFTGPEQRKQPVLSFVREFF 
Sbjct: 542 ILYTSILAYLVRCQEEQNERHLMAILSATRHKAHAFMCGLFTGPEQRKQPVLSFVREFFQ 601

Query: 645 GIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV 704
           GIDYELEEGAA+YFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV
Sbjct: 602 GIDYELEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV 661

Query: 705 RNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSK 764
           RNLSVGAAL+AV+HTLHRFRKRMLYYGV+PRRIKLVTGPTL+IV+AQMLSSVESPFEVSK
Sbjct: 662 RNLSVGAALVAVVHTLHRFRKRMLYYGVIPRRIKLVTGPTLRIVVAQMLSSVESPFEVSK 721

Query: 765 VVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI 823
           VVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMH++NILFP SAPE+RSLSPPKPLI
Sbjct: 722 VVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHRLNILFPTSAPEIRSLSPPKPLI 780


>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 841

 Score = 1352 bits (3498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/838 (78%), Positives = 725/838 (86%), Gaps = 23/838 (2%)

Query: 7   KLCPRNLYLSLTKNPNFRYPFHSNFIHHLDFNHKFIKNTSFS--------------SRLD 52
           +LCP +LY  L KNP ++  FH++   +  F    + +T F               S   
Sbjct: 6   RLCPPHLY-KLAKNPGYKPYFHASISQNSSFRTNGVIDTWFQFNSPRSILGLHLFPSIFS 64

Query: 53  YGETQNFV------KDAIFFRKPNY-VRSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYT 105
             +  NF+       D  +  K +Y  R+YCSG   +G    +WTE+IEYLDESGSVIY+
Sbjct: 65  LSKNPNFLFHTKYATDIPYCSKDSYFARNYCSGNINEGGSA-KWTEDIEYLDESGSVIYS 123

Query: 106 GKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMV 165
           GKGIRSVEPG DDHVMVGG+KKPFLN +AVAKIVE+V RWKWGPELETQLDKLQFVP M 
Sbjct: 124 GKGIRSVEPGLDDHVMVGGLKKPFLNVAAVAKIVEIVKRWKWGPELETQLDKLQFVPSMT 183

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H+ QALK+IND+D  LSLF+WAKRQ+WYV  DECY +LFD LN+ RDFDG+ SLFDEMV 
Sbjct: 184 HVVQALKIINDADGMLSLFKWAKRQTWYVVDDECYALLFDGLNKIRDFDGIQSLFDEMVQ 243

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
           DSSK GIS   AYNRVIQ+LAKA+KLE+S+CCFKKV DS CKIDTQ+YN L+T FLNKGL
Sbjct: 244 DSSKGGISSVYAYNRVIQHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGL 303

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           PYKAFEIYESM+  +CSLD STYELMIPSLAKSGRLD A KLFQEMKER  RPSF IF+S
Sbjct: 304 PYKAFEIYESMQAAQCSLDASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSS 363

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           LVDSMGK+GRLDTSMK+YMEMQG G R SA MYVSLIESY KAGKLDTALRLWDEM+ AG
Sbjct: 364 LVDSMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAG 423

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
           FRPN+GL+T+IIESHAKSGKLDIA SIF DM++AGFLPTPSTYSCLLEMHA+SGQVDSAM
Sbjct: 424 FRPNYGLYTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPSTYSCLLEMHAASGQVDSAM 483

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
           KLYNSMT+AGL+PGLSTYTALLTLLA +KLVDVAAKILLEMK MG+SVDVSASDVLMVYI
Sbjct: 484 KLYNSMTNAGLKPGLSTYTALLTLLASKKLVDVAAKILLEMKAMGFSVDVSASDVLMVYI 543

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           KDGSVD ALRWL FMGSSGIRTNNFI+RQLFESCMK  LYESAKPLLETYV SAAKVDL+
Sbjct: 544 KDGSVDLALRWLSFMGSSGIRTNNFIIRQLFESCMKKGLYESAKPLLETYVNSAAKVDLI 603

Query: 586 LYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHG 645
           LYTS+LA+LVRCQ+EQ+ERHLM+IL AT+HKAHAF+CGLFTGPEQR+QPVL FVREFF G
Sbjct: 604 LYTSILANLVRCQEEQHERHLMSILGATRHKAHAFMCGLFTGPEQRQQPVLFFVREFFQG 663

Query: 646 IDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVR 705
           IDY+LEEGAA+YFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVR
Sbjct: 664 IDYDLEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVR 723

Query: 706 NLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKV 765
           NLSVGAALIAV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIV+AQMLSSVESPFEVSKV
Sbjct: 724 NLSVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVVAQMLSSVESPFEVSKV 783

Query: 766 VLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI 823
           VLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHK+N LFP SAPE+RSL+P KPLI
Sbjct: 784 VLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKLNTLFPSSAPEIRSLAPNKPLI 841


>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
           DEFECTIVE 2217; Flags: Precursor
 gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
 gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score = 1341 bits (3471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/836 (77%), Positives = 727/836 (86%), Gaps = 18/836 (2%)

Query: 1   MIR-RVKKLCPRNLYLSLTKNPNFRYPFHSNFIHHLDFNHKFIKNTSFSSRL-DYGETQN 58
           MIR R  K+ PRN+  +L+++     P     I     N K   + SF+ RL  Y   +N
Sbjct: 1   MIRGRTAKVIPRNVIFTLSRSSISESPL----ISPSRINPKLAGSFSFNIRLLSYFTVRN 56

Query: 59  -FVKDAIFFRKPNYV----------RSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYTGK 107
            F  D    R PN+V          R +CS K G  E    WTEE+EYLDESGSV+++GK
Sbjct: 57  GFCPDCSVPRDPNFVGLTTQCRSIVRRFCSEKIGSSESSG-WTEEVEYLDESGSVLHSGK 115

Query: 108 GIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHI 167
           GIRSVEPG DDHVMVGG+KKP++NAS+VAKIVEVV RWKWGPELETQLDKLQFVP MVHI
Sbjct: 116 GIRSVEPGLDDHVMVGGLKKPYMNASSVAKIVEVVQRWKWGPELETQLDKLQFVPNMVHI 175

Query: 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
           TQ+LK++ + D +LSLFRWAK+Q WY+P DECYV+LFD LN+ RDF G+ SLF+EMV DS
Sbjct: 176 TQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDS 235

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
           S +G   F+AYN+VIQYLAKA+KLE+++CCFKK  +S CKIDTQ+YN LM LFLNKGLPY
Sbjct: 236 SSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPY 295

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           KAFEIYESMEK +  LDGSTYEL+IPSLAKSGRLDAA KLFQ+MKER  RPSF++F+SLV
Sbjct: 296 KAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLV 355

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           DSMGKAGRLDTSMKVYMEMQG GHRPSA M+VSLI+SYAKAGKLDTALRLWDEM+ +GFR
Sbjct: 356 DSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFR 415

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           PNFGL+TMIIESHAKSGKL++AM++F DME+AGFLPTPSTYSCLLEMHA SGQVDSAMK+
Sbjct: 416 PNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
           YNSMT+AGLRPGLS+Y +LLTLLA ++LVDVA KILLEMK MGYSVDV ASDVLM+YIKD
Sbjct: 476 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKD 535

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
            SVD AL+WLRFMGSSGI+TNNFI+RQLFESCMKN LY+SA+PLLET V SA KVDLVLY
Sbjct: 536 ASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLY 595

Query: 588 TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGID 647
           TS+LAHLVRCQDE  ER LM+ILSATKHKAHAF+CGLFTGPEQRKQPVL+FVREF+ GID
Sbjct: 596 TSILAHLVRCQDEDKERQLMSILSATKHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGID 655

Query: 648 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 707
           YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL
Sbjct: 656 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 715

Query: 708 SVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL 767
           SVGAALIAV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL
Sbjct: 716 SVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL 775

Query: 768 RAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI 823
           RAPG+ VMEWFKKPIVQQFLLNEIPSR+DILMHKMN++FP SAPELRS+SPPKPL+
Sbjct: 776 RAPGELVMEWFKKPIVQQFLLNEIPSRSDILMHKMNVMFPSSAPELRSMSPPKPLM 831


>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Vitis vinifera]
          Length = 844

 Score = 1335 bits (3454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/828 (78%), Positives = 725/828 (87%), Gaps = 22/828 (2%)

Query: 8   LCPRNLYLSLTKNPNFRYPFHSNFIHHLDFNHKFIKNTSFSSRLDYGETQNFVKDAIFFR 67
           + P++L L    +P F   F ++ IH+ +F + F+    FS +      +N     IF  
Sbjct: 29  VSPKDLSLLSKSHPMFTSSFQASNIHNPNFINPFL----FSLK-----ARN--PSPIFI- 76

Query: 68  KPNYVRSYCSGK----SGDGEKCNEWTEE-IEYLDESGSVIYTGKGIRSVEPGFDDHVMV 122
             N+ R++CSG     S      ++W +E +EYLDESGSVI+TGKG+RSV+PG DDHVMV
Sbjct: 77  --NFSRAFCSGNHHQNSNRSTSSSDWNQEDVEYLDESGSVIFTGKGVRSVDPGLDDHVMV 134

Query: 123 GGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLS 182
           GG+KKPFLN SAVAKIVE+VNRW+WGPELETQLDKL FVP M H+ QALK++ D+D SLS
Sbjct: 135 GGLKKPFLNVSAVAKIVEIVNRWRWGPELETQLDKLHFVPNMSHVIQALKIVTDTDASLS 194

Query: 183 LFRWAKRQSWY-VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS-KNGISLFSAYNR 240
           LFRWAKRQ WY +  DECY +LFD LN+SRDFD + SLFDEM+ DS   NG+S   A N+
Sbjct: 195 LFRWAKRQPWYSMLNDECYALLFDRLNQSRDFDAIQSLFDEMIRDSGDNNGVSSVIACNQ 254

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           V++ LAKA+KLE+++CCFKKV DS CKIDT +YN L+TLFLNKGLPYKAFE+YESME   
Sbjct: 255 VVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAG 314

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           C LDGSTYELMIPSLAKSGRLDAA KLFQEMKE+N RPSF +FASLVDSMGKAGRLDTSM
Sbjct: 315 CLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSM 374

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           KVYMEMQG G RPSA MYVSLIES+ KAGKL+TALR+WDEM+ AGFRPN+GL+TM++ESH
Sbjct: 375 KVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESH 434

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
           AKSGKL+ AMS+F+DME+AGFLPTPSTYSCLLEMH++SGQVDSAMKLYNSMT+AGLRPGL
Sbjct: 435 AKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGL 494

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
           STYTALLTLLA +KLVDVAAK+LLEMK MG+SVDVSASDVLMVYIKDGSVD ALRWLRFM
Sbjct: 495 STYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVYIKDGSVDLALRWLRFM 554

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDE 600
           GSSGIRTNNFI+RQLFESCMKN LYESAKPLLETYV SAAKVDL+LYTS+LAHLVRCQ+E
Sbjct: 555 GSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAHLVRCQEE 614

Query: 601 QNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVN 660
           QNERHLM ILSATKHKAH F+CGLFTGPEQRKQPVLSFVREFF  +DYELEEGAARYFVN
Sbjct: 615 QNERHLMLILSATKHKAHTFMCGLFTGPEQRKQPVLSFVREFFQSVDYELEEGAARYFVN 674

Query: 661 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTL 720
           VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL+AV+HTL
Sbjct: 675 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALVAVVHTL 734

Query: 721 HRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKK 780
           HRFRKRMLYYGVVPRRIKLVTGPTLKIV+AQML+SVESPFEVSKVVLRAPGDSVMEWFKK
Sbjct: 735 HRFRKRMLYYGVVPRRIKLVTGPTLKIVVAQMLNSVESPFEVSKVVLRAPGDSVMEWFKK 794

Query: 781 PIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI-GKAM 827
           PIVQQFL+NEIPSRADILMHK+N LFP SAPE+RSLSPPKPLI GKAM
Sbjct: 795 PIVQQFLINEIPSRADILMHKLNTLFPSSAPEIRSLSPPKPLISGKAM 842


>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
 gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
          Length = 832

 Score = 1327 bits (3434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/836 (77%), Positives = 722/836 (86%), Gaps = 22/836 (2%)

Query: 1   MIR-RVKKLCPRNLYLSLTKNPNFRYPFHSNFIHHLD-FNHKFIKNTSFSSRL--DYGET 56
           MIR R  K+ PRN+  +L++         S+    L   N +   + SF+ RL   +   
Sbjct: 1   MIRGRTAKIFPRNVIFTLSR---------SSISEALGRINPRLAGSFSFNIRLLSSFTVR 51

Query: 57  QNFVKDAIFFRKPNYVRSYCSGKSGDGEKCNE---------WTEEIEYLDESGSVIYTGK 107
             F  D    R PN+V      +S     C+E         WTEE+EYLDESGSV+++GK
Sbjct: 52  NGFCPDCSVPRDPNFVGLTTQSRSIVRRFCSEKSGGSESSGWTEEVEYLDESGSVLHSGK 111

Query: 108 GIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHI 167
           GIRSVEPG DDHVMVGG+KKP++NASAVAKIVEVV RWKWGPELETQLDKLQFVP MVHI
Sbjct: 112 GIRSVEPGLDDHVMVGGLKKPYMNASAVAKIVEVVQRWKWGPELETQLDKLQFVPNMVHI 171

Query: 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
           TQ+LK++ + D +LSLFRWAK+Q WY+P DECYV+LFD LN+ RDF G+ SLF+EMV DS
Sbjct: 172 TQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDS 231

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
           S +G   F AYN+VIQYLAKA+KLE+++CCFKK  +S CKIDTQ+YN LM LFLNKGLPY
Sbjct: 232 SSHGDLSFGAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPY 291

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           KAFEIYESMEK +  LDGSTYEL+IPSLAKSGRLDAA KLFQ+MKER  RPSF++F+SLV
Sbjct: 292 KAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLV 351

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           DSMGKAGRLDTSMKVYMEMQG GHRPSA M+VSLI+SYAKAGKLDTALRLWDEM+ +GFR
Sbjct: 352 DSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFR 411

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           PNFGL+TMIIESHAKSGKL++AMS+F DME+AGFLPTPSTYSCLLEMHA SGQVDSAMK+
Sbjct: 412 PNFGLYTMIIESHAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 471

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
           YNSMT+AGLRPGLS+Y +LLTLLA ++LVDVA KILLEMK MGYSVDV ASDVLM+YIKD
Sbjct: 472 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKD 531

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
            SVD AL+WLRFMGSSGI+TNNFI+RQLFESCMKN LY+SA+PLLET V SA KVDLVLY
Sbjct: 532 ASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLY 591

Query: 588 TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGID 647
           TS+LAHLVRCQDE  ER LM+ILSATKHKAHAF+CGLFTGPEQRKQPVL+FVREF+ GID
Sbjct: 592 TSILAHLVRCQDEDKERQLMSILSATKHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGID 651

Query: 648 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 707
           YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL
Sbjct: 652 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 711

Query: 708 SVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVL 767
           SVGAALIAV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQ+LSSVESPFEVSKVVL
Sbjct: 712 SVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQVLSSVESPFEVSKVVL 771

Query: 768 RAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI 823
           RAPGD VMEWFKKPIVQQFLLNEIPSR+DILMHKMN++FP SAPELRS+SPPKPL+
Sbjct: 772 RAPGDLVMEWFKKPIVQQFLLNEIPSRSDILMHKMNVMFPSSAPELRSMSPPKPLM 827


>gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Glycine max]
          Length = 752

 Score = 1322 bits (3421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/753 (83%), Positives = 691/753 (91%), Gaps = 5/753 (0%)

Query: 72  VRSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLN 131
           +R YC    G      EWTEEIEYLDESG VIY GKG+RSVEPG DDHVMVG +KKPF+N
Sbjct: 1   MRCYCHDSGG----AKEWTEEIEYLDESGGVIYKGKGVRSVEPGVDDHVMVGEVKKPFVN 56

Query: 132 ASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQS 191
           A AVAKIVEVV RWKWGPEL+TQLDKLQFVP M HI QALKV+ D D  LSLFRWAKRQ+
Sbjct: 57  ALAVAKIVEVVKRWKWGPELDTQLDKLQFVPNMTHIAQALKVVGDVDACLSLFRWAKRQA 116

Query: 192 WYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251
           WYVP D+CYVMLFD LN+ RDF+G+  LFDEMV DS+ +G+SLF+A NRVI+YLAKA+KL
Sbjct: 117 WYVPSDDCYVMLFDGLNQKRDFEGIQLLFDEMVGDSA-DGVSLFAACNRVIRYLAKAEKL 175

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E+S+CCFKK+L++ CK+DT++YN L+TLFLNKGLPYKAFE+YESMEK  CSLDGSTYELM
Sbjct: 176 EVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESMEKAGCSLDGSTYELM 235

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           IP+LAKSGRLDAA KLFQEMK R FRP  N+FASLVDSMGKAGRLD++MKVYMEM+G G+
Sbjct: 236 IPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYGY 295

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           +P   +YVSLIESY K+GKL+TALRLWDEMR+AGFRPNFGL+T+IIESHAKSGKL+IAMS
Sbjct: 296 KPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAMS 355

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
            F DME+AGFLPTPSTY+CLLEMHA+SGQ+D AMKLYNSMT+AGLRPGLSTYT LLTLLA
Sbjct: 356 TFLDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLA 415

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
            +KLVDVAAKILLEMK MGYSVDV+ASD+LMVYIK+GSVD ALRWLRFMGSSGIRTNNFI
Sbjct: 416 NKKLVDVAAKILLEMKAMGYSVDVTASDILMVYIKEGSVDLALRWLRFMGSSGIRTNNFI 475

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
           +RQLFESCMK+ L+ESAKPLLETYV SAAKVDL+LYTS+LAHLVRCQ+E+NERHLM+ILS
Sbjct: 476 IRQLFESCMKSGLFESAKPLLETYVNSAAKVDLILYTSILAHLVRCQEEKNERHLMSILS 535

Query: 612 ATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQ 671
           ATKHKAH+F+CGLFTGPE R QPVL+FVREFF GIDYELEEGAA+YFVNVLLNYLVLMGQ
Sbjct: 536 ATKHKAHSFMCGLFTGPEHRGQPVLTFVREFFQGIDYELEEGAAKYFVNVLLNYLVLMGQ 595

Query: 672 INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYG 731
           INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAV+HTLHRFRKRMLYYG
Sbjct: 596 INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYG 655

Query: 732 VVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEI 791
           +VPRRIKLVTG TLKIVIAQMLSSVESPFEVSKVVLRA GDSVMEWFKKPIVQQFLLNEI
Sbjct: 656 IVPRRIKLVTGATLKIVIAQMLSSVESPFEVSKVVLRASGDSVMEWFKKPIVQQFLLNEI 715

Query: 792 PSRADILMHKMNILFPCSAPELRSLSPPKPLIG 824
           PSR+DILMHK+NILFP SAPELRSLSPPKPLI 
Sbjct: 716 PSRSDILMHKLNILFPSSAPELRSLSPPKPLIA 748


>gi|449442096|ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
 gi|449490234|ref|XP_004158545.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
          Length = 823

 Score = 1295 bits (3351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/768 (79%), Positives = 695/768 (90%), Gaps = 3/768 (0%)

Query: 59  FVKDAIFFRKPNYVRSYCSGK-SGDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFD 117
           F+++   F   ++ RSYCSGK SG+G +  EWTE+IEYLDESGSVI++GKG+RSVEPG D
Sbjct: 55  FLENPHVFNNRSFTRSYCSGKESGNGGR--EWTEDIEYLDESGSVIFSGKGVRSVEPGVD 112

Query: 118 DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS 177
           DHVMVGG+KKPFLNASAVAKIVEVV RWKWGPELE+QL+KLQFVP M HITQ LK+I+D+
Sbjct: 113 DHVMVGGLKKPFLNASAVAKIVEVVRRWKWGPELESQLEKLQFVPNMTHITQVLKIIDDA 172

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           + SLSLFRWAKRQSWY P DECY +LFD LN+ RDFD +  LFDE+V D S +    FSA
Sbjct: 173 EASLSLFRWAKRQSWYSPNDECYGLLFDGLNQRRDFDAIQLLFDEVVRDLSSDETVSFSA 232

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YNRVIQYLAKA+KLE+S+CCFKK+ DS  K+DTQ+YN L+TLFLNKGLPYKAFEIYESM 
Sbjct: 233 YNRVIQYLAKAEKLEVSFCCFKKIHDSGFKVDTQTYNSLITLFLNKGLPYKAFEIYESMA 292

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
             ECSLD ST+ELMIP LAKSGRLDAA+KLFQEMKE+ +RP+ N+++SLVDSMGKAGRLD
Sbjct: 293 GAECSLDASTFELMIPCLAKSGRLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMGKAGRLD 352

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           TSMK+YMEMQ    RPSA M+VSLIES+ KAGKLDTAL+LWD+M+ AGF+PNFGL++M++
Sbjct: 353 TSMKIYMEMQLLELRPSALMFVSLIESHVKAGKLDTALKLWDDMKRAGFKPNFGLYSMVV 412

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           ESHAKSGKLD+AMS+FT+ME+AGFLP PSTY CLLEM A+SG VD+AMKLYNSMT+AGLR
Sbjct: 413 ESHAKSGKLDVAMSVFTEMEKAGFLPIPSTYCCLLEMQAASGHVDAAMKLYNSMTNAGLR 472

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537
            GL+TYT+LLTLLA +KL+D+AAK+LLEMK MG+SV VSASDVLMVYIK+GSVD ALRWL
Sbjct: 473 LGLNTYTSLLTLLANKKLIDIAAKVLLEMKAMGFSVSVSASDVLMVYIKEGSVDSALRWL 532

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
           +FMGSSGIRTN+FI+RQLFESCMK  +YESA PLLETYV SAAKVDL+LYTS+LAHLVRC
Sbjct: 533 QFMGSSGIRTNSFIIRQLFESCMKKGMYESAMPLLETYVNSAAKVDLILYTSILAHLVRC 592

Query: 598 QDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARY 657
           Q+EQ ER+LM+ILS TKHKAH+FLCGLFTG EQRKQPVLSFVREFF  IDYELEE +A+Y
Sbjct: 593 QEEQKERYLMSILSTTKHKAHSFLCGLFTGTEQRKQPVLSFVREFFQSIDYELEESSAKY 652

Query: 658 FVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVM 717
           FVNVLLNYL+LMGQINRARC+WKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAV+
Sbjct: 653 FVNVLLNYLILMGQINRARCIWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVV 712

Query: 718 HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEW 777
           HTLHRFRKRMLYYG+VPRRIKLVTGPTLK+VIAQMLSSVESPFEVSKVVLRA GDSVMEW
Sbjct: 713 HTLHRFRKRMLYYGIVPRRIKLVTGPTLKLVIAQMLSSVESPFEVSKVVLRATGDSVMEW 772

Query: 778 FKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLIGK 825
           FKKPIVQQFLLNEIPSR+DILMHK+N LFP SAPE+RSLSPPKPLI +
Sbjct: 773 FKKPIVQQFLLNEIPSRSDILMHKLNTLFPSSAPEIRSLSPPKPLISR 820


>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 1244 bits (3220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/784 (77%), Positives = 670/784 (85%), Gaps = 57/784 (7%)

Query: 58  NFVKDAIF---FRKP-----NYVRSYCSGK----SGDGEKCNEWTEE-IEYLDESGSVIY 104
           NF+   +F    R P     N+ R++CSG     S      ++W +E +EYLDESGSVI+
Sbjct: 15  NFINPFLFSLKARNPSPIFINFSRAFCSGNHHQNSNRSTSSSDWNQEDVEYLDESGSVIF 74

Query: 105 TGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKM 164
           TGKG+RSV+PG DDHVMVGG+KKPFLN SAVAKIVE+VNRW+WGPELETQLDKL FVP M
Sbjct: 75  TGKGVRSVDPGLDDHVMVGGLKKPFLNVSAVAKIVEIVNRWRWGPELETQLDKLHFVPNM 134

Query: 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV 224
            H+ QALK++ D+D SL+             GD                           
Sbjct: 135 SHVIQALKIVTDTDASLN------------SGDN-------------------------- 156

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
                NG+S   A N+V++ LAKA+KLE+++CCFKKV DS CKIDT +YN L+TLFLNKG
Sbjct: 157 -----NGVSSVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKG 211

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           LPYKAFE+YESME   C LDGSTYELMIPSLAKSGRLDAA KLFQEMKE+N RPSF +FA
Sbjct: 212 LPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFA 271

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           SLVDSMGKAGRLDTSMKVYMEMQG G RPSA MYVSLIES+ KAGKL+TALR+WDEM+ A
Sbjct: 272 SLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKA 331

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           GFRPN+GL+TM++ESHAKSGKL+ AMS+F+DME+AGFLPTPSTYSCLLEMH++SGQVDSA
Sbjct: 332 GFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSA 391

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
           MKLYNSMT+AGLRPGLSTYTALLTLLA +KLVDVAAK+LLEMK MG+SVDVSASDVLMVY
Sbjct: 392 MKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVY 451

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
           IKDGSVD ALRWLRFMGSSGIRTNNFI+RQLFESCMKN LYESAKPLLETYV SAAKVDL
Sbjct: 452 IKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDL 511

Query: 585 VLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFH 644
           +LYTS+LAHLVRCQ+EQNERHLM ILSATKHKAH F+CGLFTGPEQRKQPVLSFVREFF 
Sbjct: 512 ILYTSILAHLVRCQEEQNERHLMLILSATKHKAHTFMCGLFTGPEQRKQPVLSFVREFFQ 571

Query: 645 GIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV 704
            +DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV
Sbjct: 572 SVDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV 631

Query: 705 RNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSK 764
           RNLSVGAAL+AV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIV+AQML+SVESPFEVSK
Sbjct: 632 RNLSVGAALVAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVVAQMLNSVESPFEVSK 691

Query: 765 VVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPLI- 823
           VVLRAPGDSVMEWFKKPIVQQFL+NEIPSRADILMHK+N LFP SAPE+RSLSPPKPLI 
Sbjct: 692 VVLRAPGDSVMEWFKKPIVQQFLINEIPSRADILMHKLNTLFPSSAPEIRSLSPPKPLIS 751

Query: 824 GKAM 827
           GKA+
Sbjct: 752 GKAI 755


>gi|357165906|ref|XP_003580534.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Brachypodium distachyon]
          Length = 775

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/740 (58%), Positives = 572/740 (77%), Gaps = 7/740 (0%)

Query: 88  EWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKW 147
           EWT+ ++YLDE+G V+ +  G R   PG +  ++ G    P    +A A++  +  R + 
Sbjct: 34  EWTDTVDYLDETGEVLSSAPGARPAVPGAEPTILSGSSAHPLPRPAAAARLAALALRLRS 93

Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTS--LSLFRWAKRQSWYVPGDECYVMLFD 205
           GP L   L  L   P    +  A   +  SD +  LSL  W++ Q W+VP D+   ++  
Sbjct: 94  GPSLSAALSALPSPPDPSLLLLAATSLPASDPTPLLSLVAWSRHQPWFVPSDDLSSLVAA 153

Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
            L  +     +LSLFD+ +  +  +  +     N V+  LA    LE ++ CFK++ D+ 
Sbjct: 154 RLQPATHSSDLLSLFDDAL--AHPDPATFPKTLNAVVSALATHGLLEPAFYCFKRLRDAG 211

Query: 266 CK-IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
            + ++T +YN L+++ L +GL +KAFE+ + M    C+LD  TYEL +P+LA++GR+DA+
Sbjct: 212 FRGLETPTYNALLSVLLTRGLAFKAFEVLDEMSVSGCALDKGTYELAVPALARAGRIDAS 271

Query: 325 IKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            KLF EM++R+   R S  +++ +VD + K+GRLD +M +Y EM   GHR S  +  +++
Sbjct: 272 RKLFDEMRQRDGVGRASPGVYSVMVDVLAKSGRLDAAMGMYREMVAVGHRVSTSVSTAMV 331

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           E   +AGKLD  + LW+EMR  G RP+FGL+TM++E++A+SG+LD+A  +F DME++GF 
Sbjct: 332 EGLVRAGKLDAGMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDVAAKLFGDMEKSGFF 391

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           PTP+TY+CL+EMHAS+GQVD AM++Y+SM +AG RPGLST+TALLT+LA ++L+D+AAK+
Sbjct: 392 PTPATYACLVEMHASAGQVDIAMRMYHSMANAGTRPGLSTFTALLTMLANKRLLDLAAKV 451

Query: 503 LLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
           LLEMK  G+ ++V+ASD+LM+YIKDGS + ALRWLRFMGS+GIRTNNFI+RQLFESCMK 
Sbjct: 452 LLEMKASGFPIEVTASDLLMIYIKDGSTELALRWLRFMGSAGIRTNNFIIRQLFESCMKM 511

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLC 622
            LY+SA+PLLETYV +AAKVD++LYTS+LAHLVRCQDE +E  +M ILS ++HKAH F+C
Sbjct: 512 GLYDSARPLLETYVGAAAKVDMILYTSILAHLVRCQDEGSEWAIMDILSVSRHKAHDFMC 571

Query: 623 GLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVA 682
           GLFTGPEQRK+PVLSFVREFF GIDY+ EE AARYFVNVLLNYLVLMGQ+NRARCVWKVA
Sbjct: 572 GLFTGPEQRKKPVLSFVREFFQGIDYDNEESAARYFVNVLLNYLVLMGQMNRARCVWKVA 631

Query: 683 YENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG 742
           YENKLFPKAIVFDQHIAWSLD+RNLSVGAAL++ +HTLHRFRKRMLYYGVVPRRIKLVTG
Sbjct: 632 YENKLFPKAIVFDQHIAWSLDIRNLSVGAALVSTVHTLHRFRKRMLYYGVVPRRIKLVTG 691

Query: 743 PTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKM 802
           PTLK+V+AQ+L+S+ESPFEVSKVVLRAPGDSV+EWFKKPIVQQFLLNEIPS++D+LMHK+
Sbjct: 692 PTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSKSDVLMHKL 751

Query: 803 NILFPCSAPELRSLSPPKPL 822
           N++FP SAPE+RSL+ P+ L
Sbjct: 752 NVMFPSSAPEVRSLNLPRSL 771


>gi|414585491|tpg|DAA36062.1| TPA: hypothetical protein ZEAMMB73_917988 [Zea mays]
 gi|414585492|tpg|DAA36063.1| TPA: hypothetical protein ZEAMMB73_917988 [Zea mays]
          Length = 787

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/741 (58%), Positives = 568/741 (76%), Gaps = 9/741 (1%)

Query: 88  EWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKW 147
           EWT+ ++YLDESG+++ + +G R   PG D  ++ G    P    +A A++  +  R + 
Sbjct: 46  EWTDTVDYLDESGALLSSARGARPAVPGADPTILSGASAHPLPRPAAAARLAALALRHRS 105

Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTS--LSLFRWAKRQSWYVPGDECYVMLFD 205
           G  L   L  L   P    +  A   +  SD    +SL  WA+ Q W+VP D+   +L  
Sbjct: 106 GATLSAALSALPSPPDPALLLLAAASLPASDPVPLISLVAWARLQPWFVPSDDLSSLLAA 165

Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLF-SAYNRVIQYLAKADKLEMSYCCFKKVLDS 264
            L  +     +L+LFD+ +  S    ++ F   +N V+  LA    LE ++ CFK++ D 
Sbjct: 166 RLPPATHSSELLALFDDTLGLSD---LATFPKTFNAVVSALATHGLLEPAFYCFKRLRDV 222

Query: 265 DCK-IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
             + ++T +YN L++L L +GL +KAFE+ + M    C+LD  TY+L +P+LA++GR+DA
Sbjct: 223 SFRGLETPAYNALLSLLLTRGLAFKAFEVLDEMATSGCALDEGTYQLAVPALARAGRIDA 282

Query: 324 AIKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           A K+F EMK+R    R    +++ +VD + KAGRLD +M +Y EM   GHR S  +  ++
Sbjct: 283 ARKMFDEMKQREGIGRAPVGVYSVMVDVLAKAGRLDAAMGMYREMVVVGHRVSTAVSTAM 342

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           +E+  ++GKLD  + LW+EMR  G RP+FGL+TM++E++A+SG+LD+A  +F DME++GF
Sbjct: 343 VEALVRSGKLDAGMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDMAAKLFGDMEKSGF 402

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            PTP+TY+CL+EMHAS+GQVD+AM+LY+SM ++G RPGLST+TALLT+LA + L+D+AAK
Sbjct: 403 FPTPATYACLVEMHASAGQVDAAMRLYHSMANSGTRPGLSTFTALLTMLANKSLLDLAAK 462

Query: 502 ILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
           +LLEMK  G+ ++V+ASD+LM+YIKDGS D ALRWLRFMGS+GIRTNNFI+RQLFESCMK
Sbjct: 463 VLLEMKASGFPIEVTASDLLMIYIKDGSTDLALRWLRFMGSAGIRTNNFIIRQLFESCMK 522

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
             LY+SA+ LLE YV  AAKVDL+LYTS+LAHLVRCQDE +ER +M IL  +KHKAH F+
Sbjct: 523 TGLYDSARSLLEAYVAGAAKVDLILYTSILAHLVRCQDESSERTIMDILGTSKHKAHDFM 582

Query: 622 CGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKV 681
           CGLFTGPEQRKQPVLSFVREFF GIDY+ EE AARYFVNVLLNYLVLMGQ+NRARCVWKV
Sbjct: 583 CGLFTGPEQRKQPVLSFVREFFQGIDYDNEESAARYFVNVLLNYLVLMGQMNRARCVWKV 642

Query: 682 AYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVT 741
           AYENKLF KAIVFDQHIAWSLDVR+LSVGAAL+A +HTLHRFRKRMLYYGVVPRRIKLVT
Sbjct: 643 AYENKLFAKAIVFDQHIAWSLDVRSLSVGAALVATVHTLHRFRKRMLYYGVVPRRIKLVT 702

Query: 742 GPTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHK 801
           GPTLK+V+AQ+L+S+ESPFEVSKVVLRAPGDSV+EWFKKPIVQQFLLNEIPS+AD+LMH+
Sbjct: 703 GPTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSKADVLMHR 762

Query: 802 MNILFPCSAPELRSLSPPKPL 822
           +N++FP SAPE+RSLS P+ L
Sbjct: 763 LNVMFPSSAPEVRSLSIPRSL 783


>gi|326489575|dbj|BAK01768.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520708|dbj|BAJ92717.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/750 (58%), Positives = 571/750 (76%), Gaps = 11/750 (1%)

Query: 80  SGDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIV 139
           S +     EW + ++YLDE+G ++ +  G R   PG D  ++ G    P    +A A++ 
Sbjct: 27  SSEPPPGGEWIDTVDYLDETGEILSSAPGARPAVPGADPTILSGSSAHPLPRPAAAARLA 86

Query: 140 EVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTS--LSLFRWAKRQSWYVPGD 197
            +  R + GP L   L  L   P    +  A   +  SD +  LSL  WA+ Q W+VP D
Sbjct: 87  ALALRHRSGPSLSAALSALPSQPDPALLLLAANSLPASDPTPLLSLVGWARHQPWFVPSD 146

Query: 198 ECYVMLFDVLNESRDFDGMLSLFDE-MVHDSSKNGISLF-SAYNRVIQYLAKADKLEMSY 255
           +   ++   L+ +     +LSLFD+ ++H       +LF    N V+  L+    LE ++
Sbjct: 147 DLSSIVAARLSPATHSSDLLSLFDDALLHPQP----ALFPKTLNAVVSALSAHGLLEPAF 202

Query: 256 CCFKKVLDSDCK-IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
            CFK++ D+    + T +YN L++L L +GL +KAFE+ + M    C LD  TYEL +P+
Sbjct: 203 YCFKRLRDAGFHGLQTTTYNALLSLLLARGLAFKAFEVLDEMSVAGCELDKGTYELAVPA 262

Query: 315 LAKSGRLDAAIKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
           LA++GR+DA+ KLF EM++R+     S  +++++VD + K+GRLD +M +Y EM    HR
Sbjct: 263 LARAGRIDASRKLFDEMRQRDGVGPASPGVYSTMVDVLAKSGRLDAAMGMYREMVAVEHR 322

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
            S  +  S++E   KAGKLD  + LW+EMR  G RP+FGL+TM++E++A+SG+LD+A  +
Sbjct: 323 VSTSVSTSMVEGLVKAGKLDAGMELWEEMRRGGLRPSFGLYTMVLEANARSGRLDVAAKL 382

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F DMER+GF PTP+TY+CL+EMHAS+G VD AMK+Y+SM +AG RPGLST+T+LLT+LA 
Sbjct: 383 FGDMERSGFFPTPATYACLVEMHASAGNVDVAMKMYHSMANAGTRPGLSTFTSLLTMLAN 442

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
           +KL+D+AAK+LLEMK  G+ ++V+ASD+LM+YIKDGS + ALRWLRFMGS+GIRTNNFI+
Sbjct: 443 KKLLDLAAKVLLEMKASGFPIEVTASDLLMIYIKDGSTELALRWLRFMGSAGIRTNNFII 502

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
           RQLFESCMK  LY+SA+PLLETYV +AAKVD++LYTS+LAHLVRCQDE +ER +M ILS 
Sbjct: 503 RQLFESCMKMGLYDSARPLLETYVSAAAKVDMILYTSILAHLVRCQDEDSERAIMNILSV 562

Query: 613 TKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQI 672
           ++HKAH F+CGLFTGPEQRK+PVLSFVREFF GIDYE EE AARYFVNVLLNYLVLMGQ+
Sbjct: 563 SRHKAHDFMCGLFTGPEQRKKPVLSFVREFFQGIDYENEESAARYFVNVLLNYLVLMGQM 622

Query: 673 NRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGV 732
           NRARCVWKVAYENKLFPKAIVFDQHIAWSLD+RNLSVGAAL++ +HTLHRFRKRMLYYGV
Sbjct: 623 NRARCVWKVAYENKLFPKAIVFDQHIAWSLDIRNLSVGAALVSTVHTLHRFRKRMLYYGV 682

Query: 733 VPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEIP 792
           VPRRIKLVTGPTLK+V+AQ+L+S+ESPFEVSKVVLRAPGDSV+EWFKKPIVQQFLLNEIP
Sbjct: 683 VPRRIKLVTGPTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIP 742

Query: 793 SRADILMHKMNILFPCSAPELRSLSPPKPL 822
           S++D+LMHK+N++FP SAPE RSL+ P+ L
Sbjct: 743 SKSDVLMHKLNVMFPSSAPEARSLALPRSL 772


>gi|115460498|ref|NP_001053849.1| Os04g0612800 [Oryza sativa Japonica Group]
 gi|38568022|emb|CAE05207.3| OSJNBa0070C17.14 [Oryza sativa Japonica Group]
 gi|113565420|dbj|BAF15763.1| Os04g0612800 [Oryza sativa Japonica Group]
          Length = 784

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/740 (58%), Positives = 556/740 (75%), Gaps = 6/740 (0%)

Query: 88  EWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKW 147
           EWT+ ++YLDESG V+ +  G R+  PG D  ++ G    P    +A A++  +  R++ 
Sbjct: 42  EWTDTVDYLDESGEVLSSAPGARAAVPGADATILSGSSAHPLPRPAAAARLAALALRFRS 101

Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTS--LSLFRWAKRQSWYVPGDECYVMLFD 205
           GP L   L  L   P    +  A   +  SD +  L+L  WA+ Q W+VP D+  +    
Sbjct: 102 GPSLSAALSALPSQPDPALLLLAASSLPASDPTPLLALVAWARVQPWFVPSDDTLLPPRR 161

Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
                                      S   +     +    A  LE ++ CFK++ D+ 
Sbjct: 162 PPRPGHQLLRTPLPLRRYPRPPRHPPPSPRPSTPFSPRSPPMA-LLEPAFFCFKRLRDAG 220

Query: 266 CKI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
            ++ +T +YN L++L L +GL +KAFE+ + M    C+LD  TYEL++P+LA++GR+DAA
Sbjct: 221 FRVLETHAYNALLSLLLTRGLAFKAFEVLDEMSSSGCALDEGTYELVVPALARAGRIDAA 280

Query: 325 IKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            K+F EM++R    R S  ++  LVD + KAGRLD +M +Y EM   GHR S  +  +++
Sbjct: 281 RKMFDEMRKREGIGRASAGMYGVLVDVLAKAGRLDAAMGMYREMVAVGHRASPAVSTAVV 340

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           E   +AGKLD  + LW+EMR  G RP+FGL+TM++E++A+SG+LD+A  +F DME++GF 
Sbjct: 341 EGLVRAGKLDAGMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDVATQLFGDMEKSGFF 400

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           PTP+TY+CL+EMHAS+GQVD+AM+LY+SM +AG RPGLST+TALL +LA ++++D+AAK+
Sbjct: 401 PTPATYACLVEMHASAGQVDAAMRLYHSMANAGQRPGLSTFTALLMMLANKRMLDLAAKV 460

Query: 503 LLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
           LLEMK  G+ ++V+ASD+LM+YIK+GS + ALRWLRFMGS+GIRTNNFI+RQLFESCMK 
Sbjct: 461 LLEMKASGFPIEVTASDLLMIYIKEGSTELALRWLRFMGSAGIRTNNFIIRQLFESCMKT 520

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLC 622
            LY+SA+PLLETYV  AAKVDL+LYTS+LAHLVRCQDE  ER +M ILS +KHKAH F+C
Sbjct: 521 GLYDSARPLLETYVAGAAKVDLILYTSILAHLVRCQDEGRERAIMDILSVSKHKAHDFMC 580

Query: 623 GLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVA 682
           GLFTGPEQRK+PVLSFVREFF GIDY+ EE AARYFVNVLLNYLVLMGQ+NRARC+WKVA
Sbjct: 581 GLFTGPEQRKKPVLSFVREFFQGIDYDNEESAARYFVNVLLNYLVLMGQMNRARCIWKVA 640

Query: 683 YENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG 742
           YENKLF KAIVFDQHIAWSLDVRNLSVGAAL+A +HTLHRFRKRMLYYGVVPRRIKLVTG
Sbjct: 641 YENKLFAKAIVFDQHIAWSLDVRNLSVGAALVATVHTLHRFRKRMLYYGVVPRRIKLVTG 700

Query: 743 PTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKM 802
           PTLK+V+AQ+L+S+ESPFEVSKVVLRAPGDSV+EWFKKPIVQQFLLNEIPS+AD+LMH++
Sbjct: 701 PTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSKADVLMHRL 760

Query: 803 NILFPCSAPELRSLSPPKPL 822
           N++FP SAPE+RSLS P+ L
Sbjct: 761 NVMFPSSAPEVRSLSIPRSL 780


>gi|125549696|gb|EAY95518.1| hypothetical protein OsI_17364 [Oryza sativa Indica Group]
          Length = 847

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/733 (58%), Positives = 557/733 (75%), Gaps = 15/733 (2%)

Query: 88  EWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKW 147
           EWT+ ++YLDESG V+ +  G R+  PG D  ++ G    P    +A A++  +  R++ 
Sbjct: 93  EWTDTVDYLDESGEVLSSAPGARAAVPGADATILSGSSAHPLPRPAAAARLAALALRFRS 152

Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTS--LSLFRWAKRQSWYVPGDECYVMLFD 205
           GP L   L  L   P    +  A   +  SD +  L+L  WA+ Q W+VP +E   +L  
Sbjct: 153 GPSLSAALSALPSQPDPALLLLAASSLPASDPNPLLALVAWARVQPWFVPSEELSSLLAA 212

Query: 206 VL---NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
            L   N S +    L     M H   +    LFS  +           LE ++ CFK++ 
Sbjct: 213 RLAPANHSSELLSYLRYLCLMSHALPRPQ-RLFSPCS------CTHGLLEPAFFCFKRLR 265

Query: 263 DSDCKI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           D+  ++ +T +YN L++L L +GL +KAFE+ + M    C+LD  TYEL++P+LA++GR+
Sbjct: 266 DAGFRVLETHAYNALLSLLLTRGLAFKAFEVLDEMSSSGCALDEGTYELVVPALARAGRI 325

Query: 322 DAAIKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           DAA K+F EM++R    R S  ++  LVD + KAGRLD +M +Y EM   GHR S  +  
Sbjct: 326 DAARKMFDEMRKREGIGRASAGMYGVLVDVLAKAGRLDAAMGMYREMVAVGHRASPAVST 385

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +++E   +AGKLD  + LW+EMR  G RP+FGL+TM++E++A+SG+LD+A  +F DME++
Sbjct: 386 AMVEGLVRAGKLDAGMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDVATQLFGDMEKS 445

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           GF PTP+TY+CL+EMHAS+GQVD+AM+LY+SM +AG RPGLST+TALL +LA ++++D+A
Sbjct: 446 GFFPTPATYACLVEMHASAGQVDAAMRLYHSMANAGQRPGLSTFTALLMMLANKRMLDLA 505

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           AK+LLEMK  G+ ++V+ASD+LM+YIK+GS + ALRWLRFMGS+GIRTNNFI+RQLFESC
Sbjct: 506 AKVLLEMKASGFPIEVTASDLLMIYIKEGSTELALRWLRFMGSAGIRTNNFIIRQLFESC 565

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHA 619
           MK  LY+SA+PLLETYV  AAKVDL+LYTS+LAHLVRCQDE  ER +M ILS +KHKAH 
Sbjct: 566 MKTGLYDSARPLLETYVAGAAKVDLILYTSILAHLVRCQDEGRERAIMDILSVSKHKAHD 625

Query: 620 FLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVW 679
           F+CGLFTGPEQRK+PVLSFVREFF GIDY+ EE AARYFVNVLLNYLVLMGQ+NRARC+W
Sbjct: 626 FMCGLFTGPEQRKKPVLSFVREFFQGIDYDNEESAARYFVNVLLNYLVLMGQMNRARCIW 685

Query: 680 KVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKL 739
           KVAYENKLF KAIVFDQHIAWSLDVRNLSVGAAL+A +HTLHRFRKRMLYYGVVPRRIKL
Sbjct: 686 KVAYENKLFAKAIVFDQHIAWSLDVRNLSVGAALVATVHTLHRFRKRMLYYGVVPRRIKL 745

Query: 740 VTGPTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILM 799
           VTGPTLK+V+AQ+L+S+ESPFEVSKVVLRAPGDSV+EWFKKPIVQQFLLNEIPS+AD+LM
Sbjct: 746 VTGPTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSKADVLM 805

Query: 800 HKMNILFPCSAPE 812
           H++N++FP SAPE
Sbjct: 806 HRLNVMFPSSAPE 818


>gi|242077154|ref|XP_002448513.1| hypothetical protein SORBIDRAFT_06g028250 [Sorghum bicolor]
 gi|241939696|gb|EES12841.1| hypothetical protein SORBIDRAFT_06g028250 [Sorghum bicolor]
          Length = 718

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/704 (60%), Positives = 548/704 (77%), Gaps = 27/704 (3%)

Query: 139 VEVVNRWKWGPELETQLDKLQFVPKM---VHITQALKVINDSDTS----------LSLFR 185
           VE V RW+  P   T+    Q   +M   V + ++ ++      S          +SL  
Sbjct: 18  VESVCRWRLCPPAATKPPS-QTAEEMLLRVGLARSARLRGGGGASSLPASDPVPLISLVA 76

Query: 186 WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY----NRV 241
           WA+ Q W+VP D+   +L   L  +     +L+LFD+ +      G+   +A+    N V
Sbjct: 77  WARLQPWFVPSDDLSSLLASRLPPATHSSELLALFDDTL------GLPDLAAFPKTFNAV 130

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCK-IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +  LA    LE ++ CFK++ D+  + ++T +YN L++L L +GL +KAFE+ + M    
Sbjct: 131 VSALATHGLLEPAFYCFKRLRDASFRGLETPAYNALLSLLLARGLAFKAFEVLDEMATSG 190

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDT 358
           C+LD STYEL +P+LA++GR+DAA K+F EMK+R    R    +++ +VD + KAGRLD 
Sbjct: 191 CALDESTYELAVPALARAGRIDAARKMFDEMKQREGIGRAPVGVYSVMVDVLAKAGRLDA 250

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +M +Y EM   GHR S  +  +++E+  ++GKLD  + LW+EMR  G RP+FGL+TM++E
Sbjct: 251 AMGMYREMVAVGHRVSTAVSTAMVEALVRSGKLDAGMELWEEMRRGGLRPSFGLYTMVVE 310

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           ++A+SG+LD+A  +F DME++GF PTP+TY+CL+EMHAS+GQVD+AM+LY+SM +AG RP
Sbjct: 311 ANARSGRLDMAAKLFGDMEKSGFFPTPATYACLVEMHASAGQVDAAMRLYHSMANAGTRP 370

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLR 538
           GLST+TALLT+LA ++L+D+AAK+LLEMK  G+ ++V+ASD+LM+YIKDGS D ALRWLR
Sbjct: 371 GLSTFTALLTMLANKRLLDLAAKVLLEMKASGFPIEVTASDLLMIYIKDGSTDLALRWLR 430

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
           FMGS+GIRTNNFI+RQLFESCMK  LY+SA+PLLE YV  AAKVDL+LYTS+LAHLVRCQ
Sbjct: 431 FMGSAGIRTNNFIIRQLFESCMKTGLYDSARPLLEAYVAGAAKVDLILYTSILAHLVRCQ 490

Query: 599 DEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYF 658
           DE +ER +M IL A+KHKAH F+CGLFTGPEQRKQPVLSFVREFF GIDY+ EE AARYF
Sbjct: 491 DESSERAIMDILCASKHKAHDFMCGLFTGPEQRKQPVLSFVREFFQGIDYDNEESAARYF 550

Query: 659 VNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMH 718
           VNVLLNYLVLMGQ+NRARCVWKVAYENKLF KAIVFDQHIAWSLDVR+LSVGAAL+A +H
Sbjct: 551 VNVLLNYLVLMGQMNRARCVWKVAYENKLFAKAIVFDQHIAWSLDVRSLSVGAALVATVH 610

Query: 719 TLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWF 778
           TLHRFRKRMLYYGVVPRRIKLVTGPTLK+V+AQ+L+S+ESPFEVSKVVLRAPGDSV+EWF
Sbjct: 611 TLHRFRKRMLYYGVVPRRIKLVTGPTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWF 670

Query: 779 KKPIVQQFLLNEIPSRADILMHKMNILFPCSAPELRSLSPPKPL 822
           KKPIVQQFLLNEIPS+AD+LMH++N++FP SAPE+RSLS P+ L
Sbjct: 671 KKPIVQQFLLNEIPSKADVLMHRLNVMFPSSAPEVRSLSIPRSL 714


>gi|125591609|gb|EAZ31959.1| hypothetical protein OsJ_16132 [Oryza sativa Japonica Group]
          Length = 756

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/730 (57%), Positives = 540/730 (73%), Gaps = 49/730 (6%)

Query: 88  EWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKW 147
           EWT+ ++YLDESG V+ +  G  +  PG D  ++ G    P    +A A++  +  R++ 
Sbjct: 42  EWTDTVDYLDESGEVLSSAPGALAAVPGADATILSGSSAHPLPRPAAAARLAALALRFRS 101

Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTS--LSLFRWAKRQSWYVPGDECYVMLFD 205
           GP L   L  L   P    +  A   +  SD +  L L R   R +  +           
Sbjct: 102 GPSLSAALSALPSQPDPALLLLAASSLPASDPTPVLGLRRLGARPAMTL----------- 150

Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
                                            N V+  LA    LE ++ CFK++ D+ 
Sbjct: 151 ---------------------------------NAVLSALATHGLLEPAFFCFKRLRDAG 177

Query: 266 CKI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
            ++ +T +YN L++L L +GL +KAFE+ + M    C+LD  TYEL++P+LA++GR+DAA
Sbjct: 178 FRVLETHAYNALLSLLLTRGLAFKAFEVLDEMSSSGCALDEGTYELVVPALARAGRIDAA 237

Query: 325 IKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            K+F EM++R    R S  ++  LVD + KAGRLD +M +Y EM   GHR S  +  +++
Sbjct: 238 RKMFDEMRKREGIGRASAGMYGVLVDVLAKAGRLDAAMGMYREMVAVGHRASPAVSTAVV 297

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           E   +AGKLD  + LW+EMR  G RP+FGL+TM++E++A+SG+LD+A  +F DME++GF 
Sbjct: 298 EGLVRAGKLDAGMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDVATQLFGDMEKSGFF 357

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           PTP+TY+CL+EMHAS+GQVD+AM+LY+SM +AG RPGLST+TALL +LA ++++D+AAK+
Sbjct: 358 PTPATYACLVEMHASAGQVDAAMRLYHSMANAGQRPGLSTFTALLMMLANKRMLDLAAKV 417

Query: 503 LLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
           LLEMK  G+ ++V+ASD+LM+YIK+GS + ALRWLRFMGS+GIRTNNFI+RQLFESCMK 
Sbjct: 418 LLEMKASGFPIEVTASDLLMIYIKEGSTELALRWLRFMGSAGIRTNNFIIRQLFESCMKT 477

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLC 622
            LY+SA+PLLETYV  AAKVDL+LYTS+LAHLVRCQDE  ER +M ILS +KHKAH F+C
Sbjct: 478 GLYDSARPLLETYVAGAAKVDLILYTSILAHLVRCQDEGRERAIMDILSVSKHKAHDFMC 537

Query: 623 GLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVA 682
           GLFTGPEQRK+PVLSFVREFF GIDY+ EE AARYFVNVLLNYLVLMGQ+NRARC+WKVA
Sbjct: 538 GLFTGPEQRKKPVLSFVREFFQGIDYDNEESAARYFVNVLLNYLVLMGQMNRARCIWKVA 597

Query: 683 YENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG 742
           YENKLF KAIVFDQHIAWSLDVRNLSVGAAL+A +HTLHRFRKRMLYYGVVPRRIKLVTG
Sbjct: 598 YENKLFAKAIVFDQHIAWSLDVRNLSVGAALVATVHTLHRFRKRMLYYGVVPRRIKLVTG 657

Query: 743 PTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKM 802
           PTLK+V+AQ+L+S+ESPFEVSKVVLRAPGDSV+EWFKKPIVQQFLLNEIPS+AD+LMH++
Sbjct: 658 PTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSKADVLMHRL 717

Query: 803 NILFPCSAPE 812
           N++FP SAPE
Sbjct: 718 NVMFPSSAPE 727


>gi|302798857|ref|XP_002981188.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
 gi|300151242|gb|EFJ17889.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
          Length = 796

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/673 (32%), Positives = 362/673 (53%), Gaps = 14/673 (2%)

Query: 131 NASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQ 190
           NA  ++KI+ VV R  W PE+E +L  L   P   HI + LK I + D +   F+W +RQ
Sbjct: 69  NADLISKILYVVRRPYWSPEVERELQLLDIRPSEFHINEVLKNIQEPDVANGFFQWIRRQ 128

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
            WYVP    + +L +     +DF  +  +  ++  D          AYN +I+   KA K
Sbjct: 129 KWYVPSTYSFSILLNTYGRGKDFQAVQRVLSDLKADKCPMTTV---AYNTLIKVYGKAHK 185

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           L+ ++  +K++ DS C  D  ++N LM+L+   G   K  E+Y+ M+K  CSLD   YE+
Sbjct: 186 LDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDRVGYEV 245

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++P   K GRLD A  LF+ MK    +P+   +++L+    K+GRL+   K + EM+   
Sbjct: 246 VVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEEMRSLE 305

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
            RP    + SLIE+Y K+G+L+T L+ + +M    ++PN  ++  ++++HAK+G LD A+
Sbjct: 306 IRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCIYAALVDAHAKAGMLDAAL 365

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
             +  M   G    P  ++ L+E HA +G+ ++A++LY  M   GLRP   T   ++  +
Sbjct: 366 EFYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRPSHFTCRIVVGAV 425

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           AK    D   +IL EM+ MG +V  + +D ++  + D  +  A      +   G   +  
Sbjct: 426 AKGGKYDDVERILFEMQEMGLNVADAVNDSIVKLVDDKRISDAWELFLKVTGHGFTPHVS 485

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
           + R++    +     E A+ +L       + VDL  Y  +L   +R    ++E  +M+ +
Sbjct: 486 LCREILHGFLSCGDMEHARQMLSFMQRPGSAVDLRTYCMLLEFFLRGSRLEHEEVVMSFM 545

Query: 611 SATKHKAHAFLCGLFTGPEQRK-QPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLM 669
             TKH AH+FLCGL    + R  Q +  +++ F+  ++ E++    RY  NVLLNYLV+M
Sbjct: 546 RETKHPAHSFLCGLMGSSKHRNGQSLADYIKSFYSELEAEVDFKTRRYLTNVLLNYLVVM 605

Query: 670 GQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLY 729
           GQ  +AR  WKV Y+  ++P +IV    + W L VR++S+GAALI V+ TL +FR+R+L 
Sbjct: 606 GQERKARSFWKVVYQIHMYPNSIVLQGDLTWCLKVRSMSIGAALIGVLCTLEKFRERILK 665

Query: 730 YGVVPRRIKLVTGP-------TLKIVIAQMLSSVESPFEVSKVVLRA---PGDSVMEWFK 779
              VP+RIK++TG         ++  I  M+  ++SPF      L +    G   ++WF+
Sbjct: 666 RRFVPQRIKILTGSKADSDAIAVRQAIEAMMKPLDSPFIFQDEDLGSFWCRGSFFVKWFR 725

Query: 780 KPIVQQFLLNEIP 792
           +  V+  L  ++P
Sbjct: 726 QSHVRGILRQQLP 738


>gi|302801820|ref|XP_002982666.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
 gi|300149765|gb|EFJ16419.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
          Length = 796

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/673 (32%), Positives = 363/673 (53%), Gaps = 14/673 (2%)

Query: 131 NASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQ 190
           NA  ++KI+ VV R  W PE+E +L  L   P   HI + LK I + D +   F+W +RQ
Sbjct: 69  NADLISKILYVVRRPYWSPEVERELQLLDIRPSEFHINEVLKNIQEPDVANGFFQWIRRQ 128

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
            WYVP    + +L +     +DF  +  +  ++  D          AYN +I+   KA K
Sbjct: 129 KWYVPSTYSFSILLNTYGRGKDFQAVQRVLADLKADKCPMTTV---AYNTLIKVYGKAHK 185

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           L+ ++  +K++ DS C  D  ++N LM+L+   G   K  E+Y+ M+K  CSLD   YE+
Sbjct: 186 LDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDRVGYEV 245

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++P   K GRLD A  LF+ MK    +P+   +++L+    K+GRL+   K + EM+   
Sbjct: 246 VVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEEMRSLE 305

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
            RP    + SLIE+Y K+G+L+T L+ + +M    ++PN  ++  ++++HAK+G LD A+
Sbjct: 306 IRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCIYAALVDAHAKAGMLDAAL 365

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
             +  M   G    P  ++ L+E HA +G+ ++A++LY  M   GLRP   T   ++  +
Sbjct: 366 EFYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRPSHFTCRIVVGAV 425

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           AK    D   +IL EM+ MG +V  + +D ++  + D  +  A      +   G   +  
Sbjct: 426 AKGGKYDDVERILFEMQEMGLNVADAVNDSIVKLVDDKRISDAWELFLKVTGHGFTPHVS 485

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
           + R++    +     E A+ +L       + VDL  Y  +L   +R    ++E  +++ +
Sbjct: 486 LCREILHGFLSCGDMEHARQMLSFMQRPGSAVDLRTYCMLLEFFLRGSRLEHEEVIISFM 545

Query: 611 SATKHKAHAFLCGLFTGPEQRK-QPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLM 669
             TKH AH+FLCGL    + RK Q +  +++ F+  ++ E++    RY  NVLLNYLV+M
Sbjct: 546 RETKHPAHSFLCGLMGSSKHRKGQSLADYIKSFYSELEAEVDFKTRRYLTNVLLNYLVVM 605

Query: 670 GQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLY 729
           GQ  +AR  WKV Y+  ++P +IV    + W L VR++S+GAALI V+ TL +FR+R+L 
Sbjct: 606 GQERKARSFWKVVYQIHMYPNSIVLQGDLTWCLKVRSMSIGAALIGVLCTLEKFRERILK 665

Query: 730 YGVVPRRIKLVTGP-------TLKIVIAQMLSSVESPFEVSKVVLRA---PGDSVMEWFK 779
              VP+RIK++TG         ++  I  M+  ++SPF      L +    G   ++WF+
Sbjct: 666 RRFVPQRIKILTGSKADSDAIAVRQAIEAMMKPLDSPFIFQDEDLGSFWCRGSFFVKWFR 725

Query: 780 KPIVQQFLLNEIP 792
           +  V+  L  ++P
Sbjct: 726 QSHVRGILRQQLP 738


>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
 gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
          Length = 574

 Score =  229 bits (583), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 139/490 (28%), Positives = 243/490 (49%), Gaps = 15/490 (3%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY  ++  L ++   D    L  EM      P+   +  L+   G+A  LD+S+K++
Sbjct: 66  DVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLF 125

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
             MQ  G  P    Y +LI+  AKAG  D A+ L+ +M+ AGFRP+   +++II    K+
Sbjct: 126 NVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCLGKA 185

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           GKL+ A  +F +M   G+ P+  TY+ ++++HA +G+ D A+KLY+ +   G  P   TY
Sbjct: 186 GKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTY 245

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
             ++ +L     ++ A ++  EM+  G+  D     +++ ++ K G+ + A +W   M  
Sbjct: 246 GIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRMLD 305

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           SG++ N      L  + ++++ Y++A  +L    +      L  YTS+L+    C+    
Sbjct: 306 SGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCAACRAAWE 365

Query: 603 ERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVL 662
              L  ++  T H AH F+C L          ++  +R FF  + +E  E + R F + L
Sbjct: 366 YDALFGLMGGTGHPAHPFVCSLLASGGTAGGTMVVGIRCFFDAMQFEELE-SRRGFADSL 424

Query: 663 LNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHR 722
           +++L   G+   A  VW+VA E  L+P A+       WS+++  +S G AL+A+  TL  
Sbjct: 425 IDFLHRAGKAVAAGSVWEVAAEKNLYPNAVREKAPQYWSINLHVMSTGTALVALARTLAM 484

Query: 723 FRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSSVESPFEVSKV---VLRA 769
           F + ++  G  P RI ++TG            +K  +  ML S+ SPF +  +       
Sbjct: 485 FAEAVVRTGAAPYRIDIITGWGRRSRVPGASLVKQAVEGMLRSLNSPFHLDGLNVGCFVG 544

Query: 770 PGDSVMEWFK 779
            G ++ EW K
Sbjct: 545 QGPALAEWLK 554



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 176/357 (49%), Gaps = 3/357 (0%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           VA++  ++N+  WG E    L  L        + + LK   ++  + + F WA++Q+ + 
Sbjct: 5   VARVCGILNQHGWGDETVRALAGLNASLNAYQVNEILKQQKEAGVAYNFFIWARKQAGFK 64

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
                Y  +  +L  ++ FD + +L DEM+ +  +  +     YNR+I    +A+ L+ S
Sbjct: 65  HDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVV---TYNRLIHCYGRANDLDSS 121

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F  +    C+ D  +Y  L+ L    G    A E+Y  M+      D  TY ++I  
Sbjct: 122 LKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHC 181

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+G+L+AA KLF EM +R + PS   +  ++D   KAG+ D ++K+Y ++Q  G+ P 
Sbjct: 182 LGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPD 241

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  ++E     G ++ A ++++EM  AG+  +  +F ++++   K+G  + A   F 
Sbjct: 242 RVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFN 301

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
            M  +G  P     + LL  +  S   D+A  +   M   GL P L TYT+LL+  A
Sbjct: 302 RMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCA 358


>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
 gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
          Length = 564

 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/490 (28%), Positives = 244/490 (49%), Gaps = 20/490 (4%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY  ++  L ++   D    L  EM      P+   +  L+   G+A  LD+S+K++
Sbjct: 66  DVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLF 125

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
             MQ  G  P    Y +LI+  AKAG  D A+ L+ +M+ AGFRP+   +++II    K+
Sbjct: 126 NVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSIIIHCLGKA 185

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           GKL+ A  +F +M   G+ P+  TY+ ++++HA +G+ D A+KLY+ +   G  P   TY
Sbjct: 186 GKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTY 245

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
             ++ +L     ++ A ++  EM+  G+  D     +++ ++ K G+ + A +W   M  
Sbjct: 246 GIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRMLD 305

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           SG++ N      L  + ++++ Y++A  +L    +      L  YTS+L+    C+    
Sbjct: 306 SGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCAACRAAWE 365

Query: 603 ERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVL 662
              L  ++  T H AH F+C L    E     ++  +R FF  + +E  E + R F + L
Sbjct: 366 YDALFGLMGGTGHPAHPFVCSLLASGE-----MVVGIRCFFDAMQFEELE-SRRGFADSL 419

Query: 663 LNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHR 722
           +++L   G+   A  VW+VA E  L+P A+       WS+++  +S G AL+A+  TL  
Sbjct: 420 IDFLHRAGKAVAAGSVWEVAAEKNLYPNAVREKAPQYWSINLHVMSTGTALVALARTLAM 479

Query: 723 FRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSSVESPFEVSKV---VLRA 769
           F + ++  G  P RI ++TG            +K  +  ML S+ SPF +  +       
Sbjct: 480 FAEAVVRTGAAPYRIDIITGWGRRSRVPGASLVKQAVEGMLRSLNSPFHLDGLNVGCFVG 539

Query: 770 PGDSVMEWFK 779
            G ++ EW K
Sbjct: 540 QGPALAEWLK 549



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 176/357 (49%), Gaps = 3/357 (0%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           VA++  ++N+  WG E    L  L        + + LK   ++  + + F WA++Q+ + 
Sbjct: 5   VARVCGILNQHGWGDETVRALAGLNANLNAYQVNEILKQQKEAGVAYNFFIWARKQAGFK 64

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
                Y  +  +L  ++ FD + +L DEM+ +  +  +     YNR+I    +A+ L+ S
Sbjct: 65  HDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVV---TYNRLIHCYGRANDLDSS 121

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F  +    C+ D  +Y  L+ L    G    A ++Y  M+      D  TY ++I  
Sbjct: 122 LKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSIIIHC 181

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+G+L+AA KLF EM +R + PS   +  ++D   KAG+ D ++K+Y ++Q  G+ P 
Sbjct: 182 LGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPD 241

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  ++E     G ++ A ++++EM  AG+  +  +F ++++   K+G  + A   F 
Sbjct: 242 RVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFN 301

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
            M  +G  P     + LL  +  S   D+A  +   M   GL P L TYT+LL+  A
Sbjct: 302 RMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCA 358


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/501 (27%), Positives = 256/501 (51%), Gaps = 23/501 (4%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY  MI  + ++   +A  +L QEM+     P    +  L+ + G+A  L  +M+++
Sbjct: 66  DVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIF 125

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G  P    Y +L++ ++KAG  D A+ ++ +M+ AGF+P+   +++II    K+
Sbjct: 126 YQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKA 185

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           GK+  A+ +F +M   GF P+  TY+ ++++ A SG    AMKLYN M  AG  P   TY
Sbjct: 186 GKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTY 245

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L +   +  A  +  EM+  G+  D     V++ ++ K  + + AL W + M  
Sbjct: 246 SIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQKMLD 305

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           SG+  N  I   L  S ++   ++ A  ++ET         L  +T +L+    C     
Sbjct: 306 SGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTILLS---SCTASAQ 362

Query: 603 ERHLMAILSATKHKAHAFLCGLFTG--PEQRKQPVLSFVREFFHGIDYELEEGAARYFVN 660
              ++ ++  +    ++F+C L     P Q  + ++    E  HG +++ + G    F +
Sbjct: 363 HHQVVNLMHRSSETVYSFVCTLLLRQLPPQELKHIVQHFFESLHGEEHDCKRG----FTD 418

Query: 661 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTL 720
            L+ +L  + +   A  VW+V  E+ L+P+A+    +  +S+++  +S+G AL+A+  TL
Sbjct: 419 SLIEFLHNLERRPEAGLVWEVGREHNLYPQAVRMKANNQYSINLHVMSMGTALVALSRTL 478

Query: 721 HRFRKRMLYYGVVPRRIKLVTG-------PTLKIV---IAQMLSSVESPF--EVSKV-VL 767
             FR++MLY GV P RI+++TG       P   +V   +  +L+++ SPF  E S V   
Sbjct: 479 SEFREKMLYTGVAPERIEIITGWGKHSRVPGASLVRQAVQNLLTALGSPFYVESSNVGCF 538

Query: 768 RAPGDSVMEWFKKPIVQQFLL 788
            + G  +  W  +P V+  LL
Sbjct: 539 VSHGKPLQNWLHQPHVEHMLL 559



 Score =  163 bits (412), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 169/358 (47%), Gaps = 3/358 (0%)

Query: 131 NASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQ 190
           N   V  +  ++ +  W P+    L ++       HI + LK   +S  +L  F WAK Q
Sbjct: 1   NGEVVDHVCNILRQLNWRPDTLVALSRVNRTLSAFHINEVLKHQKESGLALKFFDWAKEQ 60

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
             Y      Y  +  ++  +R+F+    L  EM  +  +  +     YNR+I    +A+ 
Sbjct: 61  EGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVV---TYNRLIHAYGRANF 117

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           L  +   F ++ +  C  D  +Y  L+ L    G    A ++Y+ M++     D  TY +
Sbjct: 118 LGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSV 177

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I  L K+G++  A+KLF+EM ER F PS   +  ++D   K+G    +MK+Y +MQ  G
Sbjct: 178 IIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAG 237

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P    Y  ++E   + G L  A  +++EM  AG+ P+  ++ ++++   K+   + A+
Sbjct: 238 FHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERAL 297

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             +  M  +G  P     + LL  +    Q D A  +  +M + GL P L T+T LL+
Sbjct: 298 EWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTILLS 355


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score =  202 bits (515), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 139/478 (29%), Positives = 236/478 (49%), Gaps = 29/478 (6%)

Query: 286 PYKAFEIYESMEKGECSL--------------DGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           PY+A ++ + ++    +L              DG TY  M+  L ++ +  A  KL  +M
Sbjct: 347 PYQANQVLKQLQDHTVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQM 406

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            +   +P+   +  L+ S G+A  L+ ++ V+ EMQ  G  P    Y +LI+ +AKAG L
Sbjct: 407 VKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFL 466

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D AL ++  M+ AG  P+   +++II    K+G L  A  +F +M   G +P   TY+ +
Sbjct: 467 DFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIM 526

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + + A +    SA+KLY  M SAG +P   TY+ ++ +L     +D A  +  EMK   +
Sbjct: 527 IALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNW 586

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D     +L+ ++ K G+V+ A +W + M ++G+R N      L  + ++      A  
Sbjct: 587 VPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYN 646

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI----LSATKHKAHAFLCGLFT 626
           LL++ +E      L  YT +L+    C  E    + M I    ++ T H AH FL  L +
Sbjct: 647 LLQSMLELGLNPSLQTYTLLLS----CCTEARSPYDMGIYCELMAVTGHPAHMFLLSLPS 702

Query: 627 -GPE-QRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYE 684
            GP+ Q  +   S   +  H  D E + G     V+ ++++L   G    A  VW+VA +
Sbjct: 703 AGPDGQNVRDHASKFLDLMHSEDRESKRG----LVDAVVDFLHKSGLKEEAGSVWEVAAQ 758

Query: 685 NKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG 742
             ++P A+       W +++  +S G A+ A+  TL  FR++ML  G+ P RI +VTG
Sbjct: 759 RNVYPDAVKEKGSCYWLINLHVMSDGTAVTALSRTLAWFRQQMLVSGISPSRIDIVTG 816



 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/468 (25%), Positives = 204/468 (43%), Gaps = 6/468 (1%)

Query: 120 VMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDT 179
           V V   ++   N   V  +  ++ + +WGP  E  L  L +        Q LK + D   
Sbjct: 303 VRVPSTRRFASNGHIVENVAHILRQIRWGPAAEEALANLNYSMDPYQANQVLKQLQDHTV 362

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L+ F W KRQ  +      Y  +  +L  ++ F  +  L D+MV D  +  +     YN
Sbjct: 363 ALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVV---TYN 419

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
           R+I    +A+ L  +   F ++    C+ D  +Y  L+ +    G    A E+Y+ M+  
Sbjct: 420 RLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAA 479

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             S D  TY ++I  L K+G L AA KLF EM E+   P+   +  ++    KA    ++
Sbjct: 480 GLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSA 539

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           +K+Y +MQ  G +P    Y  ++E     G LD A  ++ EM+   + P+  ++ ++++ 
Sbjct: 540 LKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDL 599

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K+G ++ A   +  M   G  P   T + LL       ++  A  L  SM   GL P 
Sbjct: 600 WGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPS 659

Query: 480 LSTYTALLTLLAK-RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV-DHALRWL 537
           L TYT LL+   + R   D+     L M   G+   +    +        +V DHA ++L
Sbjct: 660 LQTYTLLLSCCTEARSPYDMGIYCEL-MAVTGHPAHMFLLSLPSAGPDGQNVRDHASKFL 718

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
             M S    +   +V  + +   K+ L E A  + E   +     D V
Sbjct: 719 DLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQRNVYPDAV 766


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 233/471 (49%), Gaps = 19/471 (4%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+ +L ++ +  A  KL  EM     +P+   +  L+ S G+A  L+ +M V+
Sbjct: 480 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 539

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G +P    Y +LI+ +AKAG LD A+ ++  M+  G  P+   +++II    K+
Sbjct: 540 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 599

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G  P   TY+ ++++HA +    +A+KLY  M +AG  P   TY
Sbjct: 600 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 659

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L     ++ A  +  EM+   +  D     +L+ ++ K G+V+ A +W + M  
Sbjct: 660 SIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLH 719

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+R N      L  + ++      A  LL+  +    +  L  YT +L+     + + +
Sbjct: 720 AGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLD 779

Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGP--EQRKQPVLSFVREFFHGIDYELEEGAARYFV 659
                 ++++T H AH FL  +   GP  E  +    +F+ +  H  D E + G     V
Sbjct: 780 MGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRNHANNFL-DLMHSEDRESKRG----LV 834

Query: 660 NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHT 719
           + ++++L   GQ   A  VW+VA +  +FP A+       W +++  +S G A+ A+  T
Sbjct: 835 DAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRT 894

Query: 720 LHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSSVESPF 760
           L  FRK+ML  G  P RI +VTG            ++  + ++L+   SPF
Sbjct: 895 LAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPF 945



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 171/355 (48%), Gaps = 5/355 (1%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V  +  V+ R++WGP  E  L  L          Q LK +ND   +L  F W KRQ  + 
Sbjct: 419 VENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFK 478

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253
                Y  +   L  ++ F  +  L DEMV D  + N ++    YNR+I    +A+ L  
Sbjct: 479 HDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVT----YNRLIHSYGRANYLNE 534

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F ++ ++ CK D  +Y  L+ +    G    A ++Y+ M+ G  S D  TY ++I 
Sbjct: 535 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 594

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K+G L AA KLF EM ++   P+   +  ++D   KA     ++K+Y +MQ  G  P
Sbjct: 595 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 654

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  ++E     G L+ A  ++ EM+   + P+  ++ ++++   K+G ++ A   +
Sbjct: 655 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 714

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             M  AG  P   T + LL       ++  A +L  +M + GLRP L TYT LL+
Sbjct: 715 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLS 769


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 233/471 (49%), Gaps = 19/471 (4%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+ +L ++ +  A  KL  EM     +P+   +  L+ S G+A  L+ +M V+
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 422

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G +P    Y +LI+ +AKAG LD A+ ++  M+  G  P+   +++II    K+
Sbjct: 423 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 482

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G  P   TY+ ++++HA +    +A+KLY  M +AG  P   TY
Sbjct: 483 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 542

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L     ++ A  +  EM+   +  D     +L+ ++ K G+V+ A +W + M  
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLH 602

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+R N      L  + ++      A  LL+  +    +  L  YT +L+     + + +
Sbjct: 603 AGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLD 662

Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGP--EQRKQPVLSFVREFFHGIDYELEEGAARYFV 659
                 ++++T H AH FL  +   GP  E  +    +F+ +  H  D E + G     V
Sbjct: 663 MGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRNHANNFL-DLMHSEDRESKRG----LV 717

Query: 660 NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHT 719
           + ++++L   GQ   A  VW+VA +  +FP A+       W +++  +S G A+ A+  T
Sbjct: 718 DAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRT 777

Query: 720 LHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSSVESPF 760
           L  FRK+ML  G  P RI +VTG            ++  + ++L+   SPF
Sbjct: 778 LAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPF 828



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 171/355 (48%), Gaps = 5/355 (1%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V  +  V+ R++WGP  E  L  L          Q LK +ND   +L  F W KRQ  + 
Sbjct: 302 VENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFK 361

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253
                Y  +   L  ++ F  +  L DEMV D  + N ++    YNR+I    +A+ L  
Sbjct: 362 HDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVT----YNRLIHSYGRANYLNE 417

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F ++ ++ CK D  +Y  L+ +    G    A ++Y+ M+ G  S D  TY ++I 
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K+G L AA KLF EM ++   P+   +  ++D   KA     ++K+Y +MQ  G  P
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  ++E     G L+ A  ++ EM+   + P+  ++ ++++   K+G ++ A   +
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             M  AG  P   T + LL       ++  A +L  +M + GLRP L TYT LL+
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLS 652


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 233/471 (49%), Gaps = 19/471 (4%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+ +L ++ +  A  KL  EM     +P+   +  L+ S G+A  L+ +M V+
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 422

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G +P    Y +LI+ +AKAG LD A+ ++  M+  G  P+   +++II    K+
Sbjct: 423 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 482

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G  P   TY+ ++++HA +    +A+KLY  M +AG  P   TY
Sbjct: 483 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 542

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L     ++ A  +  EM+   +  D     +L+ ++ K G+V+ A +W + M  
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLH 602

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+R N      L  + ++      A  LL+  +    +  L  YT +L+     + + +
Sbjct: 603 AGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLD 662

Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGP--EQRKQPVLSFVREFFHGIDYELEEGAARYFV 659
                 ++++T H AH FL  +   GP  E  +    +F+ +  H  D E + G     V
Sbjct: 663 MGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRNHANNFL-DLMHSEDRESKRG----LV 717

Query: 660 NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHT 719
           + ++++L   GQ   A  VW+VA +  +FP A+       W +++  +S G A+ A+  T
Sbjct: 718 DAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRT 777

Query: 720 LHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSSVESPF 760
           L  FRK+ML  G  P RI +VTG            ++  + ++L+   SPF
Sbjct: 778 LAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPF 828



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 171/355 (48%), Gaps = 5/355 (1%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V  +  V+ R++WGP  E  L  L          Q LK +ND   +L  F W KRQ  + 
Sbjct: 302 VENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFK 361

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253
                Y  +   L  ++ F  +  L DEMV D  + N ++    YNR+I    +A+ L  
Sbjct: 362 HDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVT----YNRLIHSYGRANYLNE 417

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F ++ ++ CK D  +Y  L+ +    G    A ++Y+ M+ G  S D  TY ++I 
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K+G L AA KLF EM ++   P+   +  ++D   KA     ++K+Y +MQ  G  P
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  ++E     G L+ A  ++ EM+   + P+  ++ ++++   K+G ++ A   +
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             M  AG  P   T + LL       ++  A +L  +M + GLRP L TYT LL+
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLS 652


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 245/502 (48%), Gaps = 22/502 (4%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+ +L ++ +  A  KL  EM     +P+   +  L+ S G+A  L+ +M V+
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 422

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G +P    Y +LI+ +AKAG LD A+ ++  M+  G  P+   +++II    K+
Sbjct: 423 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 482

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G  P   TY+ ++++HA +    SA+KLY  M +AG  P   TY
Sbjct: 483 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTY 542

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L     ++ A  +  EM+   +  D     +L+ ++ K G+V+ A +W + M  
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLH 602

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+  N      L  + ++      A  LL+  +    +  L  YT +L+     + + +
Sbjct: 603 AGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLD 662

Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGP--EQRKQPVLSFVREFFHGIDYELEEGAARYFV 659
             +   ++++T H AH FL  +   GP  E  +    +F+ +  H  D E + G     V
Sbjct: 663 MGYCGQLMASTGHPAHMFLLKMPAAGPNGENVRNHANNFL-DLMHSEDRESKRG----LV 717

Query: 660 NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHT 719
           + ++++L   GQ   A  VW+VA +  +FP A+       W +++  +S G A+ A+  T
Sbjct: 718 DAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRT 777

Query: 720 LHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSSVESPF---EVSKVV 766
           L  FR++ML  G  P RI +VTG            ++  + ++L+   SPF     +   
Sbjct: 778 LAWFRRQMLVSGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGC 837

Query: 767 LRAPGDSVMEWFKKPIVQQFLL 788
               G+S+ +W  +  V++  L
Sbjct: 838 FVGCGESLNKWLLQSHVERMHL 859



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 173/355 (48%), Gaps = 5/355 (1%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V  +  V+ R++WGP  E  L  L          Q LK +ND   +L  F W KRQ  + 
Sbjct: 302 VENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFK 361

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253
                Y  +   L  ++ F  +  L DEMV D  + N ++    YNR+I    +A+ L  
Sbjct: 362 HDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVT----YNRLIHSYGRANYLNE 417

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F ++ ++ CK D  +Y  L+ +    G    A ++Y+ M+ G  S D  TY ++I 
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K+G L AA KLF EM ++   P+   +  ++D   KA    +++K+Y +MQ  G  P
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEP 537

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  ++E     G L+ A  ++ EM+   + P+  ++ ++++   K+G ++ A   +
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             M  AG LP   T + LL       ++  A +L  +M + GLRP L TYT LL+
Sbjct: 598 QAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLS 652


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/500 (26%), Positives = 239/500 (47%), Gaps = 18/500 (3%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+  L ++ R D+  KL ++M +   +P+   +  L+   G A  L  ++ V+
Sbjct: 376 DGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVF 435

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            EMQ  G  P    Y +LI+ +AKAG +D A+ ++  M+ AG  P+   +++II    K+
Sbjct: 436 NEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKA 495

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G +P   TY+ ++ + A +   + A+KLY+ M +AG +P   TY
Sbjct: 496 GNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTY 555

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++  L     ++ A  + +EM+   +  D     +L+ ++ K G+V+ A  W + M +
Sbjct: 556 SIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLN 615

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+  N      L  + ++      A  L+++ V    +  L  YT +L+     Q   +
Sbjct: 616 AGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSCCTEAQPAHD 675

Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNV 661
                 +++ T H AHAFL  +   GP+   Q V   V +F   +  E  EG  R  V+ 
Sbjct: 676 MGFFCELMAVTGHPAHAFLLSMPAAGPD--GQNVRDHVSKFLDMMHTEDREG-KRGLVDS 732

Query: 662 LLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLH 721
           ++N+L   G    A  VW+ A +  ++P A+       W +++  +S G A+ A+  TL 
Sbjct: 733 VVNFLNKSGLKEEAGSVWEAAAQRNVYPDAVKEKSSRYWLINLHVMSDGTAVTALSRTLA 792

Query: 722 RFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSSVESPFEVSK---VVLR 768
            FR+RML  G+ P R+ ++TG            ++  +  +L +   PF   K       
Sbjct: 793 WFRQRMLVSGIRPSRVDIITGWGRRSKVTGSSLVRQAVQDLLHTFSFPFLAEKGNSGCFV 852

Query: 769 APGDSVMEWFKKPIVQQFLL 788
             G+ + +W     V++  L
Sbjct: 853 GCGEPLCQWLNHSYVERMHL 872



 Score =  163 bits (412), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 172/363 (47%), Gaps = 3/363 (0%)

Query: 130 LNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKR 189
           +N   V  + +++ + +WGP  E  L  L F        Q LK + D   +L  F W +R
Sbjct: 310 MNRRIVEVVSDILRQLRWGPTAEKALYNLNFSMDAYQANQILKQLQDPSVALGFFDWLRR 369

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q  +      Y  +  +L  +R FD +  L ++MV D  +  +     YNR+I     A+
Sbjct: 370 QPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVV---TYNRLIHCYGCAN 426

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            L+ +   F ++ +  C+ D  +Y  L+ +    G    A  +Y+ M++   S D  TY 
Sbjct: 427 YLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYS 486

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           ++I  L K+G L AA  LF EM E    P+   +  ++    KA   + ++K+Y +MQ  
Sbjct: 487 VIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNA 546

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G +P    Y  ++E+    G L+ A  ++ EM+   + P+  ++ ++++   K+G ++ A
Sbjct: 547 GFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKA 606

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
              +  M  AG LP   T + LL       ++  A  L  SM + GLRP L TYT LL+ 
Sbjct: 607 SEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSC 666

Query: 490 LAK 492
             +
Sbjct: 667 CTE 669



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 2/206 (0%)

Query: 394 ALRLWDEMR-IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
           AL  +D +R   GFR +   +T ++    ++ + D    +   M + G  P   TY+ L+
Sbjct: 360 ALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLI 419

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +  +  +  A+ ++N M   G  P   TY  L+ + AK   +DVA  +   M+  G S
Sbjct: 420 HCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLS 479

Query: 513 VDVSASDVLMVYIKDGSVDHALRWLRF-MGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D     V++  +       A  WL   M   G   N      +     K   YE A  L
Sbjct: 480 PDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKL 539

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRC 597
                 +  + D V Y+ V+  L  C
Sbjct: 540 YHDMQNAGFQPDKVTYSIVMEALGHC 565


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 197/401 (49%), Gaps = 4/401 (0%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D L ++  FD  L L  EM  +     +     YN +I  L KA +L  ++  F 
Sbjct: 82  YNTLVDCLGKAGQFDEALRLLAEMRDNGC---VPDVRTYNCLISTLGKAGRLSEAFTLFA 138

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++ +  C  DT +YN L+      G   KA E+ E ME+  C  D  TY  +I  L K G
Sbjct: 139 EMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDG 198

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
               A KLFQEMK R  +P    F +L+D++GKAGR+D ++++  EM+  G +P    Y 
Sbjct: 199 ETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYN 258

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI  + K G L  A  L DEM+  G +P+   ++ +I    K+ +LD A  +   ME+ 
Sbjct: 259 ALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKE 318

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   TY+ L+     +G ++ A +L++ M S G  P + TY+ L+T L K   V+ A
Sbjct: 319 GCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESA 378

Query: 500 AKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +  EM+++G   D+ +   ++ V  K G VD A R    M   G+  +         S
Sbjct: 379 CVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNS 438

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
             +   ++ A+ + E   ES    D+  Y ++L  L + ++
Sbjct: 439 LGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKE 479



 Score =  169 bits (428), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 207/457 (45%), Gaps = 47/457 (10%)

Query: 142 VNRWKWGPELETQLDKLQFVPKMVHITQALKVIN-DSDT--SLSLFRWAKRQSWYVPGDE 198
           V R +   EL  ++++    P ++  +  +  +  D +T  +  LF+  KR+    P   
Sbjct: 162 VGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRG-RKPDSI 220

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
            +  L D L ++   D  L L DEM     K G+     YN +I    K   L  +Y   
Sbjct: 221 TFTALMDALGKAGRVDDALELLDEMKERGVKPGVV---TYNALIAGFGKVGDLVEAYNLL 277

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++  + CK D  +Y+ L+T  +      +A ++ + MEK  C  D  TY  +I  L K+
Sbjct: 278 DEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKA 337

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G L+ A +LF  MK +   P    +++L+ ++GKA R++++  ++ EM+  G +P    Y
Sbjct: 338 GLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTY 397

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            S+I    KAG++D A RL+ EMR  G  P+   +   + S  + G+   A  IF DM+ 
Sbjct: 398 CSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKE 457

Query: 439 AGFLPTPSTYSCLL-----------------------------------EMHASSGQVDS 463
           +G LP  +TY  LL                                   E+  S G VD 
Sbjct: 458 SGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDE 517

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLM 522
           A +L     S GL PG S+Y AL+  LAK   V  A   L ++K  G   D VS S ++ 
Sbjct: 518 AHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLIS 577

Query: 523 VYIKDGSVDHALRWLRFMGSSGI----RTNNFIVRQL 555
              + G +D A   L  M   G+    R+ + +VR+L
Sbjct: 578 ALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKL 614



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 202/460 (43%), Gaps = 5/460 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++  LAKA + E +   F+++  +    D  SY+ L+      G    A E+   M+
Sbjct: 12  YNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQ 71

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  +  TY  ++  L K+G+ D A++L  EM++    P    +  L+ ++GKAGRL 
Sbjct: 72  AKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLS 131

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  ++ EM+  G  P    Y SLI    K G+   A+ L +EM   G  P+   ++ +I
Sbjct: 132 EAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLI 191

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               K G+   A  +F +M+R G  P   T++ L++    +G+VD A++L + M   G++
Sbjct: 192 TGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVK 251

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           PG+ TY AL+    K   +  A  +L EMK  G   DV     L+   IK   +D A + 
Sbjct: 252 PGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQV 311

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L+ M   G   +      L     K  L   A  L +         D+V Y++++  L +
Sbjct: 312 LKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGK 371

Query: 597 CQDEQNERHLMAILSATKHKAHAFL-CGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
               ++   L   + +   +   F  C + T   +  Q V    R F       L     
Sbjct: 372 AARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQ-VDDADRLFSEMRGKGLSPDVI 430

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFD 695
            Y  N  LN L   G+   AR +++   E+ L P    +D
Sbjct: 431 TY--NAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYD 468



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 185/377 (49%), Gaps = 4/377 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           LF EM     K     F+A   ++  L KA +++ +     ++ +   K    +YN L+ 
Sbjct: 206 LFQEMKRRGRKPDSITFTA---LMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIA 262

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            F   G   +A+ + + M++  C  D  TY  +I  L K+ +LD A ++ ++M++    P
Sbjct: 263 GFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPP 322

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               + +L++ +GKAG L+ + +++  M+  G  P    Y +LI +  KA ++++A  L+
Sbjct: 323 DTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLF 382

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           +EM   G +P+   +  II    K+G++D A  +F++M   G  P   TY+  L      
Sbjct: 383 EEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRG 442

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSA 517
           G+   A K++  M  +GL P ++TY ALL  L+K K VD A  +L E+   G + D +  
Sbjct: 443 GRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKF 502

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
            + L +    G+VD A   L+F  S G+         L ++  K      A   LE   E
Sbjct: 503 DECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKE 562

Query: 578 SAAKVDLVLYTSVLAHL 594
              K D+V Y+S+++ L
Sbjct: 563 QGGKPDIVSYSSLISAL 579



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 169/359 (47%), Gaps = 1/359 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I  L +A K E +     ++    CK +  +YN L+      G   +A  +   M
Sbjct: 46  SYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEM 105

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D  TY  +I +L K+GRL  A  LF EM+ER   P    + SL+  +GK GR 
Sbjct: 106 RDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRS 165

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +M++  EM+  G  P    Y SLI    K G+   A +L+ EM+  G +P+   FT +
Sbjct: 166 QKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTAL 225

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +++  K+G++D A+ +  +M+  G  P   TY+ L+      G +  A  L + M   G 
Sbjct: 226 MDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGC 285

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +P + TY+ L+T L K   +D A ++L +M+  G   D    + L+  + K G ++ A R
Sbjct: 286 KPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGR 345

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
               M S G   +      L  +  K A  ESA  L E       + DL  Y S++  L
Sbjct: 346 LFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVL 404



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 147/291 (50%), Gaps = 1/291 (0%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY  ++ +LAK+G+ + A  LF+E+K   + P    ++ L++S+G+AG+ + +++V  EM
Sbjct: 11  TYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEM 70

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           Q  G +P+   Y +L++   KAG+ D ALRL  EMR  G  P+   +  +I +  K+G+L
Sbjct: 71  QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRL 130

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A ++F +M   G +P   TY+ L+      G+   AM+L   M   G  P + TY++L
Sbjct: 131 SEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSL 190

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGI 545
           +T L K      A K+  EMK  G   D      LM  + K G VD AL  L  M   G+
Sbjct: 191 ITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGV 250

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +        L     K      A  LL+    +  K D+V Y+ ++  L++
Sbjct: 251 KPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIK 301



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 158/324 (48%), Gaps = 1/324 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN L+      G   +A  ++E ++  + + D  +Y  +I SL ++G+ +AA+++  EM
Sbjct: 11  TYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEM 70

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           + +  +P+   + +LVD +GKAG+ D ++++  EM+  G  P    Y  LI +  KAG+L
Sbjct: 71  QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRL 130

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A  L+ EMR  G  P+   +  +I    K G+   AM +  +MER G  P   TYS L
Sbjct: 131 SEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSL 190

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +      G+   A KL+  M   G +P   T+TAL+  L K   VD A ++L EMK  G 
Sbjct: 191 ITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGV 250

Query: 512 SVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
              V   + L+  + K G +  A   L  M  +G + +      L    +K +  + A  
Sbjct: 251 KPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQ 310

Query: 571 LLETYVESAAKVDLVLYTSVLAHL 594
           +L+   +     D + Y +++  L
Sbjct: 311 VLKKMEKEGCPPDTITYNTLINGL 334



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 170/407 (41%), Gaps = 43/407 (10%)

Query: 156 DKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDG 215
           D + F   M  + +A +V    D +L L    K +    PG   Y  L     +  D   
Sbjct: 218 DSITFTALMDALGKAGRV----DDALELLDEMKERG-VKPGVVTYNALIAGFGKVGDLVE 272

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +L DEM  +  K  +  +S    +I  L KA +L+ +    KK+    C  DT +YN 
Sbjct: 273 AYNLLDEMKRNGCKPDVVTYSC---LITGLIKASQLDEACQVLKKMEKEGCPPDTITYNT 329

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS----------------- 318
           L+      GL   A  +++ M+   C+ D  TY  +I +L K+                 
Sbjct: 330 LINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVG 389

Query: 319 ------------------GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
                             G++D A +LF EM+ +   P    + + ++S+G+ GR   + 
Sbjct: 390 IQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEAR 449

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           K++ +M+  G  P    Y +L+   +K  ++D A  L  E+   G   +   F   +E  
Sbjct: 450 KIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEIL 509

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
              G +D A  +       G  P  S+Y+ L++  A +G+V  A      +   G +P +
Sbjct: 510 TSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDI 569

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
            +Y++L++ L +   +D A ++L EM   G  +   +   L+  ++D
Sbjct: 570 VSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQD 616


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score =  195 bits (496), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 222/442 (50%), Gaps = 7/442 (1%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+ +L ++ +     KL  EM     +P+   +  L+ S G+A  L  +M V+
Sbjct: 358 DGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVF 417

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G  P    Y +LI+ +AKAG LD A+ ++  M+ AG  P+   +++II    K+
Sbjct: 418 NQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKA 477

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G  P   T++ ++ +HA +   ++A+KLY  M +AG +P   TY
Sbjct: 478 GHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTY 537

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L     ++ A  +  EM+   +  D     +L+ ++ K G+VD A +W + M  
Sbjct: 538 SIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQ 597

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+R N      L  + ++      A  LL++ +       L  YT +L+     +   +
Sbjct: 598 AGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFD 657

Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGPE-QRKQPVLSFVREFFHGIDYELEEGAARYFVN 660
                 +++ + H AH FL  +   GP+ Q+ +  +S   +F H  D E + G     ++
Sbjct: 658 MGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRG----LMD 713

Query: 661 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTL 720
            ++++L   G    A  VW+VA    ++P A+    +  W +++  +S G A+IA+  TL
Sbjct: 714 AVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRTL 773

Query: 721 HRFRKRMLYYGVVPRRIKLVTG 742
             FRK+ML  G  P RI +VTG
Sbjct: 774 AWFRKQMLVSGDCPSRIDIVTG 795



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 203/448 (45%), Gaps = 20/448 (4%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V  +  ++ R+KWG   E  L    F        Q LK +++   +L  F W KRQ  + 
Sbjct: 297 VENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFK 356

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253
                Y  +   L  ++ F  +  L DEMV D  K N ++    YNR+I    +A+ L+ 
Sbjct: 357 HDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVT----YNRLIHSYGRANYLKE 412

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F ++ ++ C+ D  +Y  L+ +    G    A ++Y+ M++   S D  TY ++I 
Sbjct: 413 AMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIIN 472

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K+G L AA +LF EM  +   P+   F  ++    KA   +T++K+Y +MQ  G +P
Sbjct: 473 CLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQP 532

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  ++E     G L+ A  ++ EM+   + P+  ++ ++++   K+G +D A   +
Sbjct: 533 DKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWY 592

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M +AG  P   T + LL       ++  A  L  SM + GL P L TYT LL+     
Sbjct: 593 QAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTD- 651

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK------DGSV--DHALRWLRFMGSSGI 545
                 A+   +M   G  + VS     M  +K      DG    DH   +L FM S   
Sbjct: 652 ------ARSNFDMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDR 705

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLE 573
            +   ++  + +   K+ L E A  + E
Sbjct: 706 ESKRGLMDAVVDFLHKSGLKEEAGSVWE 733


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score =  195 bits (496), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 217/441 (49%), Gaps = 5/441 (1%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+  L ++    A  KL ++M +   +P+   +  L+ S G+A  L  ++ V+
Sbjct: 385 DGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVF 444

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G  P    Y +LI+ +AKAG LD A+ +++ M+  G  P+   ++++I    KS
Sbjct: 445 NQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKS 504

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G +P   TY+ L+ + A +    +A+KLY  M +AG +P   TY
Sbjct: 505 GNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTY 564

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L     ++ A  +  EMK   +  D     +L+ ++ K G+V+ A  W   M  
Sbjct: 565 SIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLR 624

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+  N      L  + ++      A  LL+  V       L  YT +L+     Q   +
Sbjct: 625 AGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQSPYD 684

Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNV 661
                 +++ + H AHAFL  +   GP+   Q V   V +F   +  E  EG  R  V+ 
Sbjct: 685 MGFCCELMAVSGHPAHAFLQSMPAAGPD--GQNVRDHVSKFLDLMHSEDREG-KRGLVDA 741

Query: 662 LLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLH 721
           ++++L   G    A  VW+VA +  ++P AI       W +++  +S G A+ A+  TL 
Sbjct: 742 VVDFLHKSGLKEEAGSVWEVAAQKNVYPDAIREKSTCYWLINLHVMSDGTAVTALSRTLA 801

Query: 722 RFRKRMLYYGVVPRRIKLVTG 742
            FR++ML  GV P RI ++TG
Sbjct: 802 WFRRQMLASGVGPNRIDIITG 822



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 185/387 (47%), Gaps = 11/387 (2%)

Query: 110 RSVEPGFDDHV----MVGGI---KKPFLNASAVAKIV-EVVNRWKWGPELETQLDKLQFV 161
           R  +  F+ H     M  GI   ++ F N+  V + V +++ + +WGP  E  L  L F 
Sbjct: 291 RPFKESFNKHTRDLNMPAGIAPTRRHFTNSGHVVEGVKDILKQLRWGPATEKALYNLNFS 350

Query: 162 PKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFD 221
                  Q LK + D   +LS F W KRQ  +      Y  +  +L  +R+F  +  L +
Sbjct: 351 IDAYQANQILKQLQDHSVALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLE 410

Query: 222 EMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           +MV D  +  +     YNR+I    +A+ L  +   F ++ +  C+ D  +Y  L+ +  
Sbjct: 411 QMVKDGCQPNVV---TYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHA 467

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
             G    A  +YE M++   S D  TY +MI  L KSG L AA +LF EM ++   P+  
Sbjct: 468 KAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIV 527

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            +  L+    KA    T++K+Y +MQ  G +P    Y  ++E     G L+ A  ++ EM
Sbjct: 528 TYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEM 587

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
           +   + P+  ++ ++I+   K+G ++ A   +  M RAG LP   T + LL       ++
Sbjct: 588 KQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRL 647

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLT 488
             A  L  +M + GL P L TYT LL+
Sbjct: 648 PDAYNLLQNMVTLGLNPSLQTYTLLLS 674



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 1/197 (0%)

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
           R  GF  +   +T ++    ++ +      +   M + G  P   TY+ L+  +  +  +
Sbjct: 378 RQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYL 437

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
             A+ ++N M   G  P   TY  L+ + AK   +DVA  +   M+ +G S D     V+
Sbjct: 438 GEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVM 497

Query: 522 MVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  + K G++  A R    M   G   N      L     K   Y++A  L      +  
Sbjct: 498 INCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGF 557

Query: 581 KVDLVLYTSVLAHLVRC 597
           K D V Y+ V+  L  C
Sbjct: 558 KPDKVTYSIVMEVLGYC 574


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/442 (28%), Positives = 224/442 (50%), Gaps = 7/442 (1%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+ +L ++ +  A  +L  EM +   +P+   +  L+ S G+A  L+ +M V+
Sbjct: 348 DGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVF 407

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G  P    Y +LI+ +AKAG LD A+ ++  M+ AG  P+   +++II    K+
Sbjct: 408 KQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKA 467

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G  P   T++ ++ +HA +   ++A+KLY  M +AG +P   TY
Sbjct: 468 GHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTY 527

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L     ++ A  +  EM+   +  D     +L+ ++ K G+V+ A +W + M  
Sbjct: 528 SIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLH 587

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+R N      L  + ++      A  LL++ +       L  YT +L+     +   +
Sbjct: 588 AGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFD 647

Query: 603 ERHLMAILSATKHKAHAFLCGLF-TGPE-QRKQPVLSFVREFFHGIDYELEEGAARYFVN 660
                 +++ + H AH FL  +   GP+ Q+ +  +S   +F H  D E + G     ++
Sbjct: 648 MGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRG----LMD 703

Query: 661 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTL 720
            ++++L   G    A  VW+VA    ++P A+       W +++  +S G A+IA+  TL
Sbjct: 704 AVVDFLHKSGLKEEAGSVWEVAAVKNVYPDALREKSCSYWLINLHVMSEGTAVIALSRTL 763

Query: 721 HRFRKRMLYYGVVPRRIKLVTG 742
             FRK+ML  G  P RI +VTG
Sbjct: 764 AWFRKQMLVTGDCPSRIDIVTG 785



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 194/421 (46%), Gaps = 41/421 (9%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V  +  ++ R+KWG   E  L    F        Q LK +++   +L  F W KRQ  + 
Sbjct: 287 VENVSGILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFK 346

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253
                Y  +   L  ++ F  +  L DEMV D  K N ++    YNR+I    +A+    
Sbjct: 347 HDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVT----YNRLIHSYGRAN---- 398

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
                                     +LN+     A  +++ M++  C  D  TY  +I 
Sbjct: 399 --------------------------YLNE-----AMNVFKQMQEAGCEPDRVTYCTLID 427

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
             AK+G LD A+ ++Q M+     P    ++ +++ +GKAG L  + +++ EM G G  P
Sbjct: 428 IHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTP 487

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   +  +I  +AKA   +TAL+L+ +M+ AGF+P+   +++++E     G L+ A  +F
Sbjct: 488 NLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVF 547

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +M+R  ++P    Y  L+++   +G V+ A + Y  M  AGLRP + T  +LL+   + 
Sbjct: 548 AEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRV 607

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWL-RFMGSSGIRTNNFIV 552
             +  A  +L  M  +G    +    +L+    D   +  + +  + M  SG   + F++
Sbjct: 608 HRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMGFCGQLMAVSGHPAHMFLL 667

Query: 553 R 553
           +
Sbjct: 668 K 668


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 220/441 (49%), Gaps = 5/441 (1%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+  L ++ +  A  KL  +M     +P+   +  L+ S G+A  L+ +++V+
Sbjct: 337 DGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVF 396

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G  P    Y +LI+ +AKAG L+ A+ ++  M+ AG  P+   ++++I    K+
Sbjct: 397 NQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKA 456

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G +P   TY+ ++ + A +    +A+KLY  M +AG  P   TY
Sbjct: 457 GHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTY 516

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L     +D A  I  EMK   +  D     +L+ ++ K G+V+ A  W + M  
Sbjct: 517 SIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLH 576

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+  N      L  + ++      A  LL++ +       L  YT +L+     +   +
Sbjct: 577 AGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQTYTLLLSCCTEARSPYD 636

Query: 603 ERHLMAILSATKHKAHAFLCGLFT-GPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNV 661
                 ++S T H AH FL  L + GP+   Q V   V +F   +  E  E + R  V+ 
Sbjct: 637 MGCYCELMSVTGHPAHMFLSSLPSAGPD--GQNVRHHVSKFLDMMHSEDRE-SKRGLVDA 693

Query: 662 LLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLH 721
           ++++L   G    A  VW++A +  ++P A+       W +++  +S G A+ A+  TL 
Sbjct: 694 VVDFLHKSGLKEEAGSVWEIAAQRNVYPDAVKEKSSCYWLINLHVMSEGTAVTALSRTLA 753

Query: 722 RFRKRMLYYGVVPRRIKLVTG 742
            FR++ML  GV+P RI +VTG
Sbjct: 754 WFRRQMLVSGVIPSRIDIVTG 774



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 199/453 (43%), Gaps = 6/453 (1%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V  + +++ + +WGP  E  L  L          Q LK + D   +L  F W K+   + 
Sbjct: 276 VENVSQILRQLRWGPSAEEALVNLNCHMDAYQANQVLKQLQDHTVALGFFHWLKQLPGFK 335

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
                Y  +  +L  ++ F  +  L D+MV D  +  +     YNR+I    +A+ L  +
Sbjct: 336 HDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVV---TYNRLIHSYGRANYLNDA 392

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F ++  + C+ D  +Y  L+ +    G    A E+Y+ M+    S D  TY +MI  
Sbjct: 393 VEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINC 452

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+G L AA KLF EM E+   P+   +  ++    KA     ++K+Y +MQ  G  P 
Sbjct: 453 LGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPD 512

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  ++E    +G LD A  ++ EM+   + P+  ++ ++++   K+G ++ A   + 
Sbjct: 513 KVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQ 572

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK-R 493
            M  AG  P   T + LL       ++  A  L  SM + GL P L TYT LL+   + R
Sbjct: 573 AMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQTYTLLLSCCTEAR 632

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL-RWLRFMGSSGIRTNNFIV 552
              D+     L M   G+   +  S +        +V H + ++L  M S    +   +V
Sbjct: 633 SPYDMGCYCEL-MSVTGHPAHMFLSSLPSAGPDGQNVRHHVSKFLDMMHSEDRESKRGLV 691

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
             + +   K+ L E A  + E   +     D V
Sbjct: 692 DAVVDFLHKSGLKEEAGSVWEIAAQRNVYPDAV 724


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score =  192 bits (487), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 217/441 (49%), Gaps = 5/441 (1%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+  L ++    A  KL ++M +   +P+   +  L+ S G+A  L  ++ V+
Sbjct: 382 DGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVF 441

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G  P    Y +LI+ +AKAG LD A+ +++ M+  G  P+   ++++I    KS
Sbjct: 442 NQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKS 501

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G +P   TY+ L+ + A +    +A++LY  M +AG +P   TY
Sbjct: 502 GNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTY 561

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L     ++ A  +  EM+   +  D     +L+ ++ K G+V+ A  W   M  
Sbjct: 562 SIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLR 621

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+  N      L  + ++      A  LL+  V       L  YT +L+     Q   +
Sbjct: 622 AGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQSPYD 681

Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNV 661
                 +++ + H AHAFL  +   GP+   Q V   V +F   +  E  EG  R  V+ 
Sbjct: 682 MGFCCELMAVSGHPAHAFLQSMPAAGPD--GQNVRDHVSKFLDLMHSEDREG-KRGLVDA 738

Query: 662 LLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLH 721
           ++++L   G    A  VW+VA +  ++P A+       W +++  +S G A+ A+  TL 
Sbjct: 739 VVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKSTCYWLINLHVMSDGTAVTALSRTLA 798

Query: 722 RFRKRMLYYGVVPRRIKLVTG 742
            FR++ML  GV P RI +VTG
Sbjct: 799 WFRRQMLASGVGPNRIDIVTG 819



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 183/381 (48%), Gaps = 11/381 (2%)

Query: 116 FDDHV----MVGGI---KKPFLNASAVAKIV-EVVNRWKWGPELETQLDKLQFVPKMVHI 167
           F+ H     M  GI   K+ F N+  V ++V +++ + +WGP  E  L  L F       
Sbjct: 294 FNKHTRDLNMPAGIVPTKRHFTNSGHVVEVVKDILKQLRWGPATEKTLYNLNFSIDAYQA 353

Query: 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
            Q LK + D   ++  F W KRQ  +      Y  +  +L  +R+F  +  L ++MV D 
Sbjct: 354 NQILKQLQDHSVAVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDG 413

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
            +  +     YNR+I    +A+ L  +   F ++ +  C+ D  +Y  L+ +    G   
Sbjct: 414 CQPNVV---TYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLD 470

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
            A  +YE M++   S D  TY +MI  L KSG L AA +LF EM ++   P+   +  L+
Sbjct: 471 VAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILI 530

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
               KA    T++++Y +MQ  G +P    Y  ++E     G L+ A  ++ EMR   + 
Sbjct: 531 ALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWV 590

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+  ++ ++++   K+G ++ A   +  M RAG LP   T + LL       ++  A  L
Sbjct: 591 PDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNL 650

Query: 468 YNSMTSAGLRPGLSTYTALLT 488
             +M + GL P L TYT LL+
Sbjct: 651 LQNMVTLGLNPSLQTYTLLLS 671



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 1/197 (0%)

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
           R  GF  +   +T ++    ++ +      +   M + G  P   TY+ L+  +  +  +
Sbjct: 375 RQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYL 434

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
             A+ ++N M   G  P   TY  L+ + AK   +DVA  +   M+ +G S D     V+
Sbjct: 435 REALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVM 494

Query: 522 MVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  + K G++  A R    M   G   N      L     K   Y++A  L      +  
Sbjct: 495 INCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGF 554

Query: 581 KVDLVLYTSVLAHLVRC 597
           K D V Y+ V+  L  C
Sbjct: 555 KPDKVTYSIVMEVLGHC 571


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 218/444 (49%), Gaps = 12/444 (2%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  MI  L ++ +  A  KL  +M +   +P+   +  ++ S G+A  L  ++ V+
Sbjct: 378 DGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVF 437

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G  P    Y +LI+ +AK+G LD A+ ++++M+ AG  P+   ++++I    K+
Sbjct: 438 KQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKA 497

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L+ A  +F  M   G +P   TY+ ++ + A +   + A+KLY  M  +G  P   TY
Sbjct: 498 GHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTY 557

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
             ++ +L     ++ A  I +EM+   +  D     +L+ ++ K G+V  A  W   M  
Sbjct: 558 CIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLK 617

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G++ N      L  + ++      A  LL++ +    K  L  YT +L+    C D Q 
Sbjct: 618 AGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSC---CTDAQT 674

Query: 603 ER--HLMAILSATKHKAHAFLCGLFT-GPE-QRKQPVLSFVREFFHGIDYELEEGAARYF 658
                   ++  T H AH FL  L + GP  Q  +  +S   +  H  D E + G     
Sbjct: 675 NDMGFCCELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRG----L 730

Query: 659 VNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMH 718
           V+ ++++L   G    A CVW+ A +  ++P A+       W +++  +S G A+ A+  
Sbjct: 731 VDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSR 790

Query: 719 TLHRFRKRMLYYGVVPRRIKLVTG 742
           TL  FR+++L  GV P RI +VTG
Sbjct: 791 TLAWFRQQLLLSGVGPSRIDIVTG 814



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 208/463 (44%), Gaps = 6/463 (1%)

Query: 125 IKKPFLNASAVAKIVE-VVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSL 183
           I   FLNA  V + V  ++ + KWGP  E  + KL          Q LK ++D   +L  
Sbjct: 306 ITSSFLNAPNVVESVSCILQQLKWGPAAEEAIGKLNCSIDAYQANQILKRVDDHAVALGF 365

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243
           F W KR   +      Y  +  +L  ++ F  +  L D+M+ D  +  +     YNR+I 
Sbjct: 366 FYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNV---VTYNRIIH 422

Query: 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303
              +A+ L+ +   FK++ ++ C+ D  +Y  L+ +    G    A  +YE M+    + 
Sbjct: 423 SYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTP 482

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY +MI  L K+G L+AA +LF  M +    P+   +  ++    KA   + ++K+Y
Sbjct: 483 DTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLY 542

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G  P    Y  ++E     G L+ A  ++ EM+   + P+  ++ ++++   KS
Sbjct: 543 RDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKS 602

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G +  A   +  M +AG  P   T + LL       Q+  A +L  SM + GL+P L TY
Sbjct: 603 GNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTY 662

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV-DHALRWLRFMGS 542
           T LL+     +  D+     L M+  G+        +        +V DH  ++L  M S
Sbjct: 663 TLLLSCCTDAQTNDMGFCCEL-MQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHS 721

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
               +   +V  + +   K+ L E A  + E  ++     D V
Sbjct: 722 EDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAV 764


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  190 bits (483), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 218/444 (49%), Gaps = 12/444 (2%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  MI  L ++ +  A  KL  +M +   +P+   +  ++ S G+A  L  ++ V+
Sbjct: 378 DGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVF 437

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G  P    Y +LI+ +AK+G LD A+ ++++M+ AG  P+   ++++I    K+
Sbjct: 438 KQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKA 497

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L+ A  +F  M   G +P   TY+ ++ + A +   + A+KLY  M  +G  P   TY
Sbjct: 498 GHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTY 557

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
             ++ +L     ++ A  I +EM+   +  D     +L+ ++ K G+V  A  W   M  
Sbjct: 558 CIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLK 617

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G++ N      L  + ++      A  LL++ +    K  L  YT +L+    C D Q 
Sbjct: 618 AGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSC---CTDAQT 674

Query: 603 ER--HLMAILSATKHKAHAFLCGLFT-GPE-QRKQPVLSFVREFFHGIDYELEEGAARYF 658
                   ++  T H AH FL  L + GP  Q  +  +S   +  H  D E + G     
Sbjct: 675 NDMGFCCELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRG----L 730

Query: 659 VNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMH 718
           V+ ++++L   G    A CVW+ A +  ++P A+       W +++  +S G A+ A+  
Sbjct: 731 VDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSR 790

Query: 719 TLHRFRKRMLYYGVVPRRIKLVTG 742
           TL  FR+++L  GV P RI +VTG
Sbjct: 791 TLAWFRQQLLLSGVGPSRIDIVTG 814



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 208/463 (44%), Gaps = 6/463 (1%)

Query: 125 IKKPFLNASAVAKIVE-VVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSL 183
           I   FLNA  V + V  ++ + KWGP  E  + KL          Q LK ++D   +L  
Sbjct: 306 ITSSFLNAPNVVESVSCILQQLKWGPAAEEAIGKLNCSIDAYQANQILKRVDDHAVALGF 365

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243
           F W KR   +      Y  +  +L  ++ F  +  L D+M+ D  +  +     YNR+I 
Sbjct: 366 FYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNV---VTYNRIIH 422

Query: 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303
              +A+ L+ +   FK++ ++ C+ D  +Y  L+ +    G    A  +YE M+    + 
Sbjct: 423 SYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTP 482

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY +MI  L K+G L+AA +LF  M +    P+   +  ++    KA   + ++K+Y
Sbjct: 483 DTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLY 542

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +MQ  G  P    Y  ++E     G L+ A  ++ EM+   + P+  ++ ++++   KS
Sbjct: 543 RDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKS 602

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G +  A   +  M +AG  P   T + LL       Q+  A +L  SM + GL+P L TY
Sbjct: 603 GNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTY 662

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV-DHALRWLRFMGS 542
           T LL+     +  D+     L M+  G+        +        +V DH  ++L  M S
Sbjct: 663 TLLLSCCTDAQTNDMGFCCEL-MQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHS 721

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
               +   +V  + +   K+ L E A  + E  ++     D V
Sbjct: 722 EDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAV 764


>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 856

 Score =  186 bits (472), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 144/546 (26%), Positives = 251/546 (45%), Gaps = 24/546 (4%)

Query: 259 KKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + VLD   CKID    N ++ L  +  +    F   +   +     DG TY  MI  L +
Sbjct: 318 EHVLDGLRCKIDAFQANQVLKLLHDHNIALGFFHWLK--RQPGFKHDGHTYTTMIGILGQ 375

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           + +     KL  EM   N +P+   +  ++ + G+A  L  ++KV+ EM+G G++P    
Sbjct: 376 AKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVT 435

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI+ +AK+G L+ A+ L+  M+  G  P+   ++ ++    K G+L  A  +F +M 
Sbjct: 436 YCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMI 495

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   TY+ ++ + A +   D+ +KLY  M  AG RP   TY+ ++ +L     +D
Sbjct: 496 DNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLD 555

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  + LEM+   ++ D     +L+ ++ K G+VD AL W   M   G++ N      L 
Sbjct: 556 EAEAVFLEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLL 614

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA-TKH 615
            + +K   ++ A  +L+  +       L  YT +L+    C D   +  L   L A T H
Sbjct: 615 SAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTLLLS---CCTDAHAQMGLCCQLMAITGH 671

Query: 616 KAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRA 675
            AH FL       E   + V    R F   +  E  E + R  ++ ++++L   G    A
Sbjct: 672 PAHMFLL-YLPDAEPGGENVRDHARYFLDMMHSEDRE-SKRGIMDAVIDFLHKSGLKEEA 729

Query: 676 RCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPR 735
             +W+VA +  ++P ++       W +++  +S G A+ A+  TL  F ++ML  G  P 
Sbjct: 730 GFIWEVAAQRNVYPDSVREKSSSYWLINLHLMSEGTAVTALSRTLAWFHRQMLLMGSCPE 789

Query: 736 RIKLVTG------PTLKIVIAQMLSSVESPFEVSKVVLRAP-------GDSVMEWFKKPI 782
           RI +VTG       T   ++ Q +  +   F+      R         G+ + +W   P 
Sbjct: 790 RIDIVTGWGRRSRVTGSSLVRQSIEKLLHLFQFPLFAARGNTGCFVGCGEPLSQWLHNPY 849

Query: 783 VQQFLL 788
           V++  L
Sbjct: 850 VERMHL 855



 Score =  163 bits (413), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 179/401 (44%), Gaps = 39/401 (9%)

Query: 134 AVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWY 193
           AV +    + + KWGP  E  LD L+         Q LK+++D + +L  F W KRQ  +
Sbjct: 300 AVEQYYHTLQQMKWGPMTEHVLDGLRCKIDAFQANQVLKLLHDHNIALGFFHWLKRQPGF 359

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
                 Y  +  +L +++ F  M  L DEM   SS N       YNR+I    +A+ L  
Sbjct: 360 KHDGHTYTTMIGILGQAKQFGTMRKLLDEM---SSVNCKPTVVTYNRIIHAYGRANYLR- 415

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
                                             +A +++E ME      D  TY  +I 
Sbjct: 416 ----------------------------------EAVKVFEEMEGAGYQPDRVTYCTLID 441

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
             AKSG L+ A+ L+  M+E    P    ++++V+ +GK G+L  + K++ EM   G  P
Sbjct: 442 IHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTP 501

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y  +I   AKA   D  ++L+ +M+IAGFRP+   +++++E     G LD A ++F
Sbjct: 502 NLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVF 561

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +M R  + P    Y  L+++   +G VD A+  Y++M   GL+P + T  +LL+   K 
Sbjct: 562 LEMRRD-WAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKL 620

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534
                A  +L  M   G    +    +L+    D      L
Sbjct: 621 NRFQDAYGVLQNMLAQGLVPSLQTYTLLLSCCTDAHAQMGL 661


>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
 gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
          Length = 853

 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/549 (25%), Positives = 261/549 (47%), Gaps = 30/549 (5%)

Query: 259 KKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + VLD+  CKID    N ++ L  +  +    F+  +   +     DG TY  MI  L +
Sbjct: 315 EHVLDNLHCKIDAFQANQVLKLLHDHTVALGFFQWLK--RQPGFKHDGHTYTTMIGILGQ 372

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           + +     KL  EM   + +P+   +  ++ + G+A  L  ++KV+ EMQ  G+ P    
Sbjct: 373 ARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVT 432

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI+ +AKAG LD A+ L+  M+  G  P+   ++ ++    K G+L  A  +F +M 
Sbjct: 433 YCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMI 492

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   TY+ ++ + A +   ++ +KLY  M  AG RP   TY+ ++ +L     +D
Sbjct: 493 ENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLD 552

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  + +EM+   ++ D     +L+ ++ K G+VD AL W + M   G++ N      L 
Sbjct: 553 EAEAVFIEMR-RDWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCNSLL 611

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA-TKH 615
            + +K   ++ A  +L+  +       +  YT +L+    C + Q +  L   L A T H
Sbjct: 612 SAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLLS---CCTEAQAQMGLCGQLMAITGH 668

Query: 616 KAHAFLCGLFTGPEQRKQPVLSFVRE---FFHGIDYELEEGAARYFVNVLLNYLVLMGQI 672
            AH FL  L   P+   +P    VR+   +F  + +  +  + R  ++ ++++L   G  
Sbjct: 669 PAHMFLLYL---PD--AEPGGQNVRDHTGYFLDMMHSEDRESKRGLMDAVIDFLHKSGLK 723

Query: 673 NRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGV 732
             A  +W+VA +  ++P ++       W +++  +S G A+ A+  TL  F +++L  G 
Sbjct: 724 EEAGLIWEVAAQKNVYPDSVREKSSSYWLINLHLMSEGTAVTALSRTLAWFHRQILTLGT 783

Query: 733 VPRRIKLVTG----------PTLKIVIAQMLSSVESPFEVSK---VVLRAPGDSVMEWFK 779
            P RI +VTG            ++  + ++L+  E PF  ++         G+ + +W  
Sbjct: 784 GPERIDIVTGWGRRSRVTGSSLVRQSVQKLLNLFEFPFFTTRGNTGCFVGCGEPLNKWLH 843

Query: 780 KPIVQQFLL 788
            P V++  L
Sbjct: 844 NPYVERMHL 852



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 138/552 (25%), Positives = 240/552 (43%), Gaps = 27/552 (4%)

Query: 91  EEIEYLDESGSVIYTGKG--IRSVEPGFDDHVMVGGIKKPFLNA----SAVAKIVEVVNR 144
           +EI+  + SG  +++G G  I+        H    G  +  L +     +V +    + +
Sbjct: 251 DEIQTRNPSGPNVFSGSGNKIQGSTGTIKAH---SGAPQSSLRSLKSLRSVEQYYHTLQQ 307

Query: 145 WKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLF 204
            KWGP  E  LD L          Q LK+++D   +L  F+W KRQ  +      Y  + 
Sbjct: 308 MKWGPMTEHVLDNLHCKIDAFQANQVLKLLHDHTVALGFFQWLKRQPGFKHDGHTYTTMI 367

Query: 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264
            +L ++R F  +  L DEM     K  +     YNR+I    +A+ L+ +   F+++ ++
Sbjct: 368 GILGQARQFGVLKKLLDEMSRAHCKPTVV---TYNRIIHAYGRANYLKEAVKVFEEMQEA 424

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
             + D  +Y  L+ +    G    A ++Y  M++   S D  TY  M+  L K G+L AA
Sbjct: 425 GYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAA 484

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
            KLF EM E    P+   +  ++    KA   +  +K+Y +MQ  G RP    Y  ++E 
Sbjct: 485 YKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEV 544

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
               G LD A  ++ EMR   + P+  ++ ++++   K+G +D A+  +  M + G  P 
Sbjct: 545 LGHCGHLDEAEAVFIEMR-RDWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPN 603

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             T + LL       +   A  +  +M + GL P + TYT LL+        +  A++ L
Sbjct: 604 VPTCNSLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLLSC-----CTEAQAQMGL 658

Query: 505 EMKTMGYSVDVSASDVLMVYIKDGSV------DHALRWLRFMGSSGIRTNNFIVRQLFES 558
             + M  ++    + + ++Y+ D         DH   +L  M S    +   ++  + + 
Sbjct: 659 CGQLM--AITGHPAHMFLLYLPDAEPGGQNVRDHTGYFLDMMHSEDRESKRGLMDAVIDF 716

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAH 618
             K+ L E A  + E   +     D V   S    L+      +E   +  LS T    H
Sbjct: 717 LHKSGLKEEAGLIWEVAAQKNVYPDSVREKSSSYWLINLH-LMSEGTAVTALSRTLAWFH 775

Query: 619 AFLCGLFTGPEQ 630
             +  L TGPE+
Sbjct: 776 RQILTLGTGPER 787


>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
          Length = 853

 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/546 (26%), Positives = 257/546 (47%), Gaps = 24/546 (4%)

Query: 259 KKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + VLD+  CKID    N ++ L  +  +    F+  +   +     DG TY  MI  L +
Sbjct: 315 EHVLDNLHCKIDAFQANQVLKLLHDHTVALGFFQWLK--RQPGFKHDGHTYTTMIGILGQ 372

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           + +     +L  EM   + +P+   +  ++ + G+A  L  ++KV+ EMQ  G+ P    
Sbjct: 373 ARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVT 432

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI+ +AKAG LD A+ L+  M+  G  P+   +++++    K G+L  A  +F +M 
Sbjct: 433 YCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLAAAYKLFCEMI 492

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   TY+ ++ + A +   ++ +KLY  M  AG RP   TY+ ++ +L     +D
Sbjct: 493 ENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLD 552

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  + +EM+   ++ D     +L+ ++ K G+VD AL W + M   G++ N      L 
Sbjct: 553 EAEAVFIEMR-RDWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCNSLL 611

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA-TKH 615
            + +K   ++ A  +L+  +       +  YT +L+    C   Q +  L   L A T H
Sbjct: 612 SAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLLS---CCTVGQAQMGLCCQLMAITGH 668

Query: 616 KAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRA 675
            AH FL  L    E   Q V      F   +  E  E + R  ++ ++++L   G    A
Sbjct: 669 PAHMFLLYL-PDAEAGGQNVRDHTGYFLDMMHSEDRE-SKRGLMDAVIDFLHKSGLKEEA 726

Query: 676 RCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPR 735
             +W+VA +  ++P ++       W +++  +S G A+ A+  TL  F +++L  G  P 
Sbjct: 727 GFIWEVAAQKNVYPDSVREKSSSYWLINLHLMSEGTAVTALSRTLAWFHRQVLTLGTGPE 786

Query: 736 RIKLVTG----------PTLKIVIAQMLSSVESPFEVSK---VVLRAPGDSVMEWFKKPI 782
           RI +VTG            ++  I ++L+  ESPF  ++         G+ + +W   P 
Sbjct: 787 RIDIVTGWGRRSRVTGSSLVRQSIQKLLNLFESPFFTTRGNTGCFVGCGEPLNKWLHNPY 846

Query: 783 VQQFLL 788
           V++  L
Sbjct: 847 VERMHL 852



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 134/549 (24%), Positives = 239/549 (43%), Gaps = 21/549 (3%)

Query: 91  EEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNAS---AVAKIVEVVNRWKW 147
           ++++  + SG  +++G G +            GG +    +     +V +    + + KW
Sbjct: 251 DDVQTRNPSGPNVFSGSGNKIQGSTGRVKAHSGGPQSNLRSLKLLRSVEQYYHTLQQMKW 310

Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVL 207
           GP  E  LD L          Q LK+++D   +L  F+W KRQ  +      Y  +  +L
Sbjct: 311 GPMTEHVLDNLHCKIDAFQANQVLKLLHDHTVALGFFQWLKRQPGFKHDGHTYTTMIGIL 370

Query: 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK 267
            ++R F  +  L DEM     K  +     YNR+I    +A+ L+ +   F+++ ++  +
Sbjct: 371 GQARQFGVLKELLDEMSRAHCKPTV---VTYNRIIHAYGRANYLKEAVKVFEEMQEAGYE 427

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            D  +Y  L+ +    G    A ++Y  M++   S D  TY +M+  L K G+L AA KL
Sbjct: 428 PDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLAAAYKL 487

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F EM E    P+   +  ++    KA   +  +K+Y +MQ  G RP    Y  ++E    
Sbjct: 488 FCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGH 547

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            G LD A  ++ EMR   + P+  ++ ++++   K+G +D A+  +  M + G  P   T
Sbjct: 548 CGHLDEAEAVFIEMR-RDWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPT 606

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
            + LL       +   A  +  +M + GL P + TYT LL+     +     A++ L  +
Sbjct: 607 CNSLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLLSCCTVGQ-----AQMGLCCQ 661

Query: 508 TMGYSVDVSASDVLMVYIKDGSV------DHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
            M  ++    + + ++Y+ D         DH   +L  M S    +   ++  + +   K
Sbjct: 662 LM--AITGHPAHMFLLYLPDAEAGGQNVRDHTGYFLDMMHSEDRESKRGLMDAVIDFLHK 719

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
           + L E A  + E   +     D V   S    L+      +E   +  LS T    H  +
Sbjct: 720 SGLKEEAGFIWEVAAQKNVYPDSVREKSSSYWLINLH-LMSEGTAVTALSRTLAWFHRQV 778

Query: 622 CGLFTGPEQ 630
             L TGPE+
Sbjct: 779 LTLGTGPER 787


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 218/441 (49%), Gaps = 5/441 (1%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+  L ++ +  A  KL  EM     +P+   +  L+ S G+A  L+ ++ V+
Sbjct: 378 DGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVF 437

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
             MQ  G +P    Y +LI+ +AKAG LD AL ++ +M+ A   P+   +++II    K+
Sbjct: 438 DRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKA 497

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G +P   TY+ ++ + A +    +A++LY  M +AG +P   TY
Sbjct: 498 GHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTY 557

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L     ++ A  I  EMK   +  D     +L+ ++ K G+V+ +  W + M +
Sbjct: 558 SIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLN 617

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+  N      L  + ++      A  LL++ +    +  L  YT +L+     +   +
Sbjct: 618 AGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFD 677

Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNV 661
                 +++ T H AH FL  +   GP+   Q V   V +F   +  E  E + R  V+ 
Sbjct: 678 MGFCGELMAVTGHPAHMFLLSMPAAGPD--GQNVRDHVSKFLDLMHSEDRE-SKRGLVDA 734

Query: 662 LLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLH 721
           ++++L   G    A  VW+VA +  ++P A+       W +++  +S G A+ A+  TL 
Sbjct: 735 VVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVREKSSCYWLINLHFMSDGTAVTALSRTLA 794

Query: 722 RFRKRMLYYGVVPRRIKLVTG 742
            F + ML  G VP RI +VTG
Sbjct: 795 WFHREMLVSGTVPSRIDIVTG 815



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 211/497 (42%), Gaps = 35/497 (7%)

Query: 113 EPGFDDHVMVGGIKKPFLNASAVA------------KIVEVVNR----WKWGPELETQLD 156
           EP F   +  GG  KP  +   +              +VE V+R      WGP  E  L 
Sbjct: 280 EPRFVGGI-AGGFSKPLRDTKMIGIAPVSRQFGSSGHVVENVSRILRQLSWGPAAEEALR 338

Query: 157 KLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
            L  +       Q LK I D   +L  F W KRQ+ +      Y  +  +L  +R F  +
Sbjct: 339 NLNCLMDAYQANQVLKQIQDHPVALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAI 398

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
             L  EMV D  +  +     YNR+I    +A+ L  +   F ++ ++ C+ D  +Y  L
Sbjct: 399 NKLLAEMVRDGCQPNVV---TYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTL 455

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           + +    G    A  +Y+ M++   S D  TY ++I  L K+G L +A KLF EM ++  
Sbjct: 456 IDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGC 515

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   +  ++    KA    T++++Y +MQ  G +P    Y  ++E     G L+ A  
Sbjct: 516 VPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEA 575

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++ EM+   + P+  ++ ++++   K G ++ +   +  M  AG  P   T + LL    
Sbjct: 576 IFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFL 635

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
              ++  A  L  SM   GL+P L TYT LL+   +       A+   +M   G  + V+
Sbjct: 636 RVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTE-------ARSSFDMGFCGELMAVT 688

Query: 517 ASDVLMVYIK------DGS--VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
                M  +       DG    DH  ++L  M S    +   +V  + +   K+ L E A
Sbjct: 689 GHPAHMFLLSMPAAGPDGQNVRDHVSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEA 748

Query: 569 KPLLETYVESAAKVDLV 585
             + E   +     D V
Sbjct: 749 GSVWEVAAQKNVYPDAV 765


>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
          Length = 859

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/546 (25%), Positives = 252/546 (46%), Gaps = 24/546 (4%)

Query: 259 KKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + VLD+  CKID    N ++ L  +  +    F+  +   +     DG +Y  MI  L +
Sbjct: 321 EHVLDNLHCKIDAFQANQVLKLLHDHTIALGFFQWLK--RQPGFKHDGHSYTTMIGILGQ 378

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           + +     KL  EM   + +P+   +  ++ + G+A  L  ++KV+ EMQ  G+ P    
Sbjct: 379 ARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVT 438

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI+ +AK G L+ A+ L+  M+  G  P+   ++ ++    K G L  A  +F +M 
Sbjct: 439 YCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMV 498

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   TY+ ++ + A +   ++ +KLY  M  AG RP   TY+ ++ +L     +D
Sbjct: 499 ENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLD 558

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  + +EM+   ++ D     +L+ ++ K G+VD AL W   M   G++ N      L 
Sbjct: 559 EAEAVFIEMR-HDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLL 617

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA-TKH 615
            + +K   ++ A  +L+  +       L  YT +L+    C + Q +  L   L A T H
Sbjct: 618 SAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLS---CCTEAQAQMGLCCQLMAITGH 674

Query: 616 KAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRA 675
            AH FL  L    E   Q V    R F   +  E  E + R  ++ ++++L   G    A
Sbjct: 675 PAHMFLLYL-PDAEPGGQNVRDHTRYFLDMMHSEDRE-SKRGLMDAVIDFLHKSGLKEEA 732

Query: 676 RCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPR 735
             +W+VA +  ++P ++       W +++  +S G A+ A+  TL  F +++L  G  P 
Sbjct: 733 GFIWEVAAQRNVYPDSVREKDPSYWLINLHLMSEGTAVTALSRTLAWFHRQILTMGKCPE 792

Query: 736 RIKLVTG----------PTLKIVIAQMLSSVESPFEVSK---VVLRAPGDSVMEWFKKPI 782
           RI +VTG            ++  + ++L   E PF  ++         G+ +  W   P 
Sbjct: 793 RIDIVTGWGRRSRVTGSSLVRQSVQKLLHLFEFPFVTTRGNTGCFVGCGEPLNRWLHNPY 852

Query: 783 VQQFLL 788
           V++  L
Sbjct: 853 VERMHL 858



 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 220/504 (43%), Gaps = 20/504 (3%)

Query: 91  EEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIK---KPFLNASAVAKIVEVVNRWKW 147
           +E++  + S   +YTG G +S           GG +   +   +  +V +    + + KW
Sbjct: 257 DEVQTQNLSAPAMYTGSGHKSQALAGTIKSHGGGPQSNLRSLKSLRSVEQYYHTLQQMKW 316

Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVL 207
           GP  E  LD L          Q LK+++D   +L  F+W KRQ  +      Y  +  +L
Sbjct: 317 GPMTEHVLDNLHCKIDAFQANQVLKLLHDHTIALGFFQWLKRQPGFKHDGHSYTTMIGIL 376

Query: 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK 267
            ++R F  M  L DEM   +S +       YNR+I    +A+ L  +   F+++  +  +
Sbjct: 377 GQARQFGTMRKLLDEM---NSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYE 433

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            D  +Y  L+ +    G    A ++Y  M++   S D  TY  M+  L K G L AA KL
Sbjct: 434 PDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKL 493

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F EM E    P+   +  ++    KA   +  +K+Y +MQ  G RP    Y  ++E    
Sbjct: 494 FCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGH 553

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            G LD A  ++ EMR   + P+  ++ ++++   K+G +D A+  +  M + G  P   T
Sbjct: 554 CGHLDEAEAVFIEMR-HDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPT 612

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
            + LL       +   A  +  +M + GL P L TYT LL+        +  A++ L  +
Sbjct: 613 CNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSC-----CTEAQAQMGLCCQ 667

Query: 508 TMGYSVDVSASDVLMVYIKDGSV------DHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
            M  ++    + + ++Y+ D         DH   +L  M S    +   ++  + +   K
Sbjct: 668 LM--AITGHPAHMFLLYLPDAEPGGQNVRDHTRYFLDMMHSEDRESKRGLMDAVIDFLHK 725

Query: 562 NALYESAKPLLETYVESAAKVDLV 585
           + L E A  + E   +     D V
Sbjct: 726 SGLKEEAGFIWEVAAQRNVYPDSV 749


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 230/487 (47%), Gaps = 11/487 (2%)

Query: 259 KKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + VLDS  CKID    N ++ L  +  +    F   +   +     DG TY  MI  L +
Sbjct: 319 EHVLDSLHCKIDAFQANQVLKLLHDHTMALGFFHWLK--RQPGFKHDGHTYTTMIGILGQ 376

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           + +      L  EM     +P+   +  ++ + G+A  L  ++KV+ EM+  G+ P    
Sbjct: 377 ARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVT 436

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI+ +AKAG L+ A+ L+  M+  G  P+   ++ ++    K G+L  A  +F +M 
Sbjct: 437 YCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMI 496

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   TY+ ++ + A +   D+ +KLY  M  AG RP   TY+ ++ +L     +D
Sbjct: 497 ENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLD 556

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  + +EM+   ++ D     +L+ ++ K G+VD AL W   M   G++ N      L 
Sbjct: 557 EAEAVFIEMR-RDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLL 615

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA-TKH 615
            + +K   ++ A  +L+  +       L  YT +L+    C D   +  L   L A T H
Sbjct: 616 SAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLS---CCTDAHAQMGLCCQLMAITGH 672

Query: 616 KAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRA 675
            AH FL  L    E   + V    R F   +  E  E + R  ++ ++++L   G    A
Sbjct: 673 PAHMFLLYL-PDAEPGGENVRDHTRYFLDMMHSEDRE-SKRGLMDAVIDFLHKSGLKEEA 730

Query: 676 RCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPR 735
             +W+VA +  ++P ++       W +++  +S G A+ A+  TL  F +++L  G  P 
Sbjct: 731 GFIWEVAAQKNVYPDSVREKSSAYWLINLHLMSEGTAVTALSRTLAWFHRQILVMGSCPE 790

Query: 736 RIKLVTG 742
           RI +VTG
Sbjct: 791 RIDIVTG 797



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 216/496 (43%), Gaps = 20/496 (4%)

Query: 99  SGSVIYTGKGIRSVEPGFDDHVMVGGIK---KPFLNASAVAKIVEVVNRWKWGPELETQL 155
           S   +Y+G   +S  P        GG +   +   +  AV +    + + KWGP  E  L
Sbjct: 263 SAPTVYSGPSDKSKGPSGTIKAHGGGPQSNLRSLKSLRAVEQYYHTLQQMKWGPMTEHVL 322

Query: 156 DKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDG 215
           D L          Q LK+++D   +L  F W KRQ  +      Y  +  +L ++R F  
Sbjct: 323 DSLHCKIDAFQANQVLKLLHDHTMALGFFHWLKRQPGFKHDGHTYTTMIGILGQARQFGI 382

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           M +L  EM  D  K  +     YNR+I    +A+ L  +   F+++ ++  + D  +Y  
Sbjct: 383 MRNLLHEMNRDRCKPTV---VTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVTYCT 439

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+ +    G    A ++Y  M++   S D  TY  M+  L K G+L AA KLF EM E  
Sbjct: 440 LIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENG 499

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P+   +  ++    KA   D  +K+Y +MQ  G RP    Y  ++E     G LD A 
Sbjct: 500 CTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAE 559

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            ++ EMR   + P+  ++ ++++   K+G +D A+  +  M + G  P   T + LL   
Sbjct: 560 AVFIEMR-RDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAF 618

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
               +   A  +  +M + GL P L TYT LL+        D  A++ L  + M  ++  
Sbjct: 619 LKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSC-----CTDAHAQMGLCCQLM--AITG 671

Query: 516 SASDVLMVYIKDGSV------DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
             + + ++Y+ D         DH   +L  M S    +   ++  + +   K+ L E A 
Sbjct: 672 HPAHMFLLYLPDAEPGGENVRDHTRYFLDMMHSEDRESKRGLMDAVIDFLHKSGLKEEAG 731

Query: 570 PLLETYVESAAKVDLV 585
            + E   +     D V
Sbjct: 732 FIWEVAAQKNVYPDSV 747


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  172 bits (435), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 129/527 (24%), Positives = 226/527 (42%), Gaps = 44/527 (8%)

Query: 110 RSVEPGFDDHVMVGGIKKPFLNASAV--AKIVEVVNRWKWGPELETQLDKLQFVPKMVHI 167
           R+  P  +D   V  +   + N+  V   + + ++  +KWGP+ E  L+ L        +
Sbjct: 36  RTPSPRNED--AVAALSPRYTNSVRVLDERFIRILKIFKWGPDAERALEVLMLRVDHWLV 93

Query: 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
            + +K     +  +  FRWA ++  Y      Y+ L   L     +  M  +  EMV   
Sbjct: 94  REVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVR-- 151

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
           S   +      ++VI+ L  A  +  +   F ++    C+   Q+YN ++ + +++G   
Sbjct: 152 SPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYE 211

Query: 288 KAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI---- 342
           K  E+Y  M  +G C  D  TY  +I +  K GR D+AI+L  EMKE   +P+  I    
Sbjct: 212 KVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMI 271

Query: 343 -------------------------------FASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
                                          +  L+  +GKAGR+D +   Y EMQ  G 
Sbjct: 272 ISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGC 331

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS-GKLDIAM 430
           +P   +  ++I    KAG+LD  L+L++EM ++   PN   +  II++  +S  ++    
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVF 391

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           S F  M+ +G  P+P TYS L++    + +++ AM L   M   G  P  + Y +L+  L
Sbjct: 392 SWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDAL 451

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K K  D+A ++  E+K    S       V++ ++ K G +D A+     M   G   N 
Sbjct: 452 GKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNV 511

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +    L     +  + + A   +    E     D+  Y  +L  L +
Sbjct: 512 YAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAK 558



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 183/361 (50%), Gaps = 9/361 (2%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           +++   +LSLF    R  +  P    Y  L   L ++   D     + EM  +  K    
Sbjct: 278 LDNVHGALSLFE-EMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTV 336

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEI 292
           +    N +I +L KA +L+     F+++  S C  +  +YN ++  LF +K    + F  
Sbjct: 337 VM---NNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSW 393

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +E M+    S    TY ++I    K+ R++ A+ L +EM E+ F P    + SL+D++GK
Sbjct: 394 FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 353 AGRLDTSMKVYMEM-QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           A R D + +++ E+ + CG   SA +Y  +I+   KAG+LD A+ L+DEM   G  PN  
Sbjct: 454 AKRYDLACELFQELKENCG-SSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVY 512

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +  ++   A++  LD A++    M+  G LP  ++Y+ +L   A +G    AM++  +M
Sbjct: 513 AYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNM 572

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
            ++ ++P   +Y  +L+ L+   + + AA+++ EM  +G+  D+     ++  I  G VD
Sbjct: 573 KNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAI--GKVD 630

Query: 532 H 532
            
Sbjct: 631 Q 631


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 128/527 (24%), Positives = 225/527 (42%), Gaps = 44/527 (8%)

Query: 110 RSVEPGFDDHVMVGGIKKPFLNASAV--AKIVEVVNRWKWGPELETQLDKLQFVPKMVHI 167
           R+  P  +D   V  +   + N+  V   + + ++  +KWGP+ E  L+ L        +
Sbjct: 36  RTPSPRNED--AVAALSPRYTNSVRVLDERFIRILKIFKWGPDAERALEVLMLRVDHWLV 93

Query: 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
            + +K     +  +  FRWA ++  Y      Y+ L   L     +  M  +  EMV   
Sbjct: 94  REVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVR-- 151

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
           S   +      ++VI+ L  A  +  +   F ++    C+   Q+YN ++ + +++G   
Sbjct: 152 SPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYE 211

Query: 288 KAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI---- 342
           K  E+Y  M  +G C  D  TY  +I +  K GR D+AI+L  EMKE   +P+  I    
Sbjct: 212 KVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMI 271

Query: 343 -------------------------------FASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
                                          +  L+  +GKAGR+D +   Y EMQ    
Sbjct: 272 ISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDC 331

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS-GKLDIAM 430
           +P   +  ++I    KAG+LD  L+L++EM ++   PN   +  II++  +S  ++    
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVF 391

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           S F  M+ +G  P+P TYS L++    + +++ AM L   M   G  P  + Y +L+  L
Sbjct: 392 SWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDAL 451

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K K  D+A ++  E+K    S       V++ ++ K G +D A+     M   G   N 
Sbjct: 452 GKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNV 511

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +    L     +  + + A   +    E     D+  Y  +L  L +
Sbjct: 512 YAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAK 558



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 183/361 (50%), Gaps = 9/361 (2%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           +++   +LSLF    R  +  P    Y  L   L ++   D     + EM  +  K    
Sbjct: 278 LDNVHGALSLFE-EMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTV 336

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEI 292
           +    N +I +L KA +L+     F+++  S C  +  +YN ++  LF +K    + F  
Sbjct: 337 VM---NNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSW 393

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +E M+    S    TY ++I    K+ R++ A+ L +EM E+ F P    + SL+D++GK
Sbjct: 394 FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 353 AGRLDTSMKVYMEM-QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           A R D + +++ E+ + CG   SA +Y  +I+   KAG+LD A+ L+DEM   G  PN  
Sbjct: 454 AKRYDLACELFQELKENCG-SSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVY 512

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +  ++   A++  LD A++    M+  G LP  ++Y+ +L   A +G    AM++  +M
Sbjct: 513 AYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNM 572

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
            ++ ++P   +Y  +L+ L+   + + AA+++ EM  +G+  D+     ++  I  G VD
Sbjct: 573 KNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAI--GKVD 630

Query: 532 H 532
            
Sbjct: 631 Q 631



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 114/275 (41%), Gaps = 3/275 (1%)

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS-LIESYAKAGK 390
           K+RN++   + + +L+  +    +     K+  EM         PM +S +I     A  
Sbjct: 115 KKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKM 174

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PTPSTYS 449
           +  A+ ++ +++    +P    +  +I      G+ +    ++ +M   G   P   TYS
Sbjct: 175 IGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYS 234

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+      G+ DSA++L N M   G++P    YT +++L  K   V  A  +  EM+ M
Sbjct: 235 ALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYM 294

Query: 510 GYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
               DV + ++++    K G +D A  +   M     + +  ++  +     K    +  
Sbjct: 295 YCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDG 354

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
             L E    S    ++V Y +++  L   +   +E
Sbjct: 355 LKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSE 389


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 208/446 (46%), Gaps = 8/446 (1%)

Query: 155 LDKLQFVPKMVHITQALKVINDS---DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESR 211
           + K + +P +V  T  +  +  +   D ++SL R  ++Q    P    Y  L     +  
Sbjct: 554 MKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCE-PSVVTYSSLMASFYKRD 612

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
             +  LSLFDEMV    K  ++  S Y+ VI  L K+D ++ +   F ++ +   +    
Sbjct: 613 QEEESLSLFDEMVR---KGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLG 669

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y  L++  +       A +I+  +++     D   Y +M+  L KS R+D A KL   M
Sbjct: 670 NYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSM 729

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           K +N  P    + SL+D +GK+GRL+ +  ++ +M   GH P    Y SL++   K GKL
Sbjct: 730 KNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKL 789

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             AL ++  M      P+   ++ +I+S  K G+++ A   F +    G  P    YS L
Sbjct: 790 SHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSL 849

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++     G VD A++L+  M      P + TY  LL+ LAK   ++VA K+L EM+ +G 
Sbjct: 850 IDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGC 909

Query: 512 SVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D+   ++L+  + K G VD A  + + M   GI  +      L ES  K      A  
Sbjct: 910 VPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACE 969

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           L ++  E      +V Y  ++  L R
Sbjct: 970 LFDSMEEEGYNPSVVTYNVLIDILGR 995



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/503 (22%), Positives = 221/503 (43%), Gaps = 44/503 (8%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFV--PKMVHITQALKVINDSDTSLS--LFRWAKRQSW 192
           KI  V+ R KW  E+  QL++L+F   P +V       V+N  D  L+   F WA +Q  
Sbjct: 122 KINGVIRRRKWDAEMGKQLERLKFKLNPGLVCDV----VVNQKDLHLAKCFFTWAGQQDG 177

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y      Y ++   L  +++ D ++ +   M  +  +  + L ++   +++     + + 
Sbjct: 178 YSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTS---LLRTFGSTNNVS 234

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F ++    C   T  YN ++ L +  G  + A  ++  + +     D  T+ + +
Sbjct: 235 GALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFV 294

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            S  +SGRLD A +  QEM +    P  + F  L+D++ K+G +D + K +  M+     
Sbjct: 295 HSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCS 354

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y +L+   AKAG+L+ A  ++ EM+     P+   +  +I+   K+G+ D+A  +
Sbjct: 355 PNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGL 414

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F +M+  G +P   TY+ ++ +   +G+   A +L++ +   G  P + TY  L+ +L K
Sbjct: 415 FKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGK 474

Query: 493 RKLVDVAAKILLEM------------KTMGYSVDVSASD--------------------V 520
              +D    I+ EM               G+   +  +D                    +
Sbjct: 475 GGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTL 534

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  +I +G VD A++ L  M              L +   K    + A  LL    +   
Sbjct: 535 MSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGC 594

Query: 581 KVDLVLYTSVLAHLVRCQDEQNE 603
           +  +V Y+S++A   + +D++ E
Sbjct: 595 EPSVVTYSSLMASFYK-RDQEEE 616



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 169/336 (50%), Gaps = 10/336 (2%)

Query: 178  DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
            D +L +F   + +S  VP    Y ++ + L +S   D    L D M    ++N +     
Sbjct: 685  DFALQIFNELQ-ESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSM---KNQNILPDLFT 740

Query: 238  YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            Y  ++  L K+ +LE ++  F K+ +   + D  +Y  LM +    G    A  I+ +M 
Sbjct: 741  YTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMA 800

Query: 298  KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            K  C  D  TY  +I SL K GR++ A   F+    +   P+  +++SL+DS GK G +D
Sbjct: 801  KKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVD 860

Query: 358  TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             +++++ EMQ     P+   Y +L+   AKAG+L+ A +L +EM   G  P+   + ++I
Sbjct: 861  RALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILI 920

Query: 418  ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD---SAMKLYNSMTSA 474
            +   K G +D A S F  M+  G +P   T++ L+E   S G+VD    A +L++SM   
Sbjct: 921  DGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIE---SLGKVDKLLEACELFDSMEEE 977

Query: 475  GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            G  P + TY  L+ +L +   V  AA I  EMK  G
Sbjct: 978  GYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKG 1013



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 186/410 (45%), Gaps = 9/410 (2%)

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
           LF   K Q   VP    Y  L DVL +    D +L++  EMV    +  IS  S      
Sbjct: 449 LFHDLKEQGA-VPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEG 507

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
                   +E     FK        +   +YN LM+ F++ G   +A ++ E M+K EC 
Sbjct: 508 TIEGADRTVEYPSLGFKS-------LGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECI 560

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
               TY  ++  L K+GRLD A+ L +EM+++   PS   ++SL+ S  K  + + S+ +
Sbjct: 561 PTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSL 620

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           + EM   G       Y  +I    K+  +D AL ++  M+  G  P  G +  ++ S  K
Sbjct: 621 FDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVK 680

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
             K+D A+ IF +++ +  +P    Y+ ++     S +VD A KL +SM +  + P L T
Sbjct: 681 DEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFT 740

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMG 541
           YT+LL  L K   ++ A  +  +M   G+  DV A   LM V  K G + HAL   R M 
Sbjct: 741 YTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMA 800

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                 +      L +S  K    E A    E  +      ++ +Y+S++
Sbjct: 801 KKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLI 850



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 154/321 (47%), Gaps = 6/321 (1%)

Query: 175  NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
            N  D +  L    K Q+  +P    Y  L D L +S   +   ++F +M  +  +  +  
Sbjct: 717  NRVDEACKLVDSMKNQN-ILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVV- 774

Query: 235  FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              AY  ++  L K  KL  +   F+ +    C  D  +Y+ L+     +G   +A+  +E
Sbjct: 775  --AYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFE 832

Query: 295  -SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
             S+ KG C+ +   Y  +I S  K G +D A++LF+EM+ R   P+   + +L+  + KA
Sbjct: 833  NSISKG-CTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKA 891

Query: 354  GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
            GRL+ + K+  EM+  G  P    Y  LI+   K G +D A   +  M+  G  P+   F
Sbjct: 892  GRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITF 951

Query: 414  TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
            T +IES  K  KL  A  +F  ME  G+ P+  TY+ L+++   +G+V  A  +++ M  
Sbjct: 952  TSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKV 1011

Query: 474  AGLRPGLSTYTALLTLLAKRK 494
             G  P   T   +  +L+ R+
Sbjct: 1012 KGCMPDGITIGIMKRILSVRE 1032


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/503 (24%), Positives = 222/503 (44%), Gaps = 51/503 (10%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + ++  +KWGP+ E  L+ L+       + + LK+  + +  +  F+WA ++  +   
Sbjct: 35  RFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEINVKIQFFKWAGKRRNFEHD 94

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
              Y+ L   L++   F  M  +  EMV   S   +   +  + V++ L KA  +  +  
Sbjct: 95  LTTYMPLIRCLDDCGLFGEMWKMIQEMVR--SPTCVIGPADLSEVVKILGKAKMVNKALS 152

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSL 315
            F ++    CK    +YN ++ + + +G   K  E+Y  M  +G+C  D  TY +++ + 
Sbjct: 153 VFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAF 212

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFAS------------------------------ 345
            K GR D AI+LF EMK     P+  I+ +                              
Sbjct: 213 VKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKALGLVQEMKDKGCAPTVF 272

Query: 346 ----LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
               L+  +GK+GR++ +  V++ M   G +P   +  +LI  + KAG+L+ AL+L+D+M
Sbjct: 273 TYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQM 332

Query: 402 RIAGFRPNFGLFTMII----ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           R     PN   +  +I    ES A + +   A S F  M+  G  P+  TYS L++    
Sbjct: 333 RSLKCAPNVVTYNTVIKALFESKAPASE---AASWFEKMKANGVTPSSFTYSILIDGFCK 389

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           + +V+ A+ L   M   G  P  + Y +L+  L K K  + A ++ LE+K    +   S+
Sbjct: 390 TNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKE---NCGRSS 446

Query: 518 SDVLMVYIKD----GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           + +  V IK+    G    A+     M   G   + +    L    ++  + E A   L 
Sbjct: 447 ARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALR 506

Query: 574 TYVESAAKVDLVLYTSVLAHLVR 596
           T  E+    DL  +  +L  L R
Sbjct: 507 TMEENGCTPDLNSHNIILNGLAR 529



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 169/325 (52%), Gaps = 7/325 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L +S   +   S+F  M+ D  K  + L    N +I    KA +LE +   F 
Sbjct: 274 YTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLI---NNLINIFGKAGRLEDALKLFD 330

Query: 260 KVLDSDCKIDTQSYN-VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           ++    C  +  +YN V+  LF +K    +A   +E M+    +    TY ++I    K+
Sbjct: 331 QMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKT 390

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPM 377
            R++ A+ L +EM E+ F P    + SL++++GKA R + + ++++E+ + CG R SA +
Sbjct: 391 NRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCG-RSSARI 449

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  +I++  K G+   A+ L++EM+  G  P+   +  ++    ++G ++ A S    ME
Sbjct: 450 YAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTME 509

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P  ++++ +L   A +G+ + A +++  M  + ++P   +Y  +L  L++  + +
Sbjct: 510 ENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFE 569

Query: 498 VAAKILLEMKTMGYSVD-VSASDVL 521
            AAK++ EM + G+  D ++ S +L
Sbjct: 570 EAAKLMREMGSRGFEYDHITYSSIL 594



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 101/203 (49%), Gaps = 3/203 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +  + P    Y  L + L +++ ++    LF E+  +  ++   +++    +I+ L K  
Sbjct: 405 EKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAV---MIKNLGKCG 461

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           +   +   F ++    C  D  +YN LM+  +  G+  +AF    +ME+  C+ D +++ 
Sbjct: 462 RPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHN 521

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           +++  LA++GR + A ++F +MK+   +P    + +++ S+ ++G  + + K+  EM   
Sbjct: 522 IILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSR 581

Query: 370 GHRPSAPMYVSLIESYAKAGKLD 392
           G       Y S++E+  K  + D
Sbjct: 582 GFEYDHITYSSILEAVGKVDEDD 604


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 202/426 (47%), Gaps = 8/426 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  +  ++ +P   C  +L  ++N +     + + + E++       +     YN
Sbjct: 172 AIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVT-IWTFYSEILEYGFPPKVQY---YN 227

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I    K   +  +   F ++     +  T S+N L+          + F + ++ME+ 
Sbjct: 228 ILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEEN 287

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K GRLD A +LF EM++R  RP+   F +L+D   ++ R+D++
Sbjct: 288 RIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSA 347

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M  Y +M   G +P   MY +L+    K G ++ A +L DEMR+ G +P+   +T +I+ 
Sbjct: 348 MNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDG 407

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ AM I   M   G +     ++ L+      G+V  A +    M  AG++P 
Sbjct: 408 YCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPD 467

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
            +TYT ++    K+  V +  K+L EM+  G+   V   +VLM  + K G + +A   L 
Sbjct: 468 DATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLE 527

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
            M + G+  ++     L E   KN     A+ LL+   E    VD   YTS+++   +  
Sbjct: 528 AMLNLGVTPDDITYNILLEGHCKNG---KAEDLLKLRNEKGLIVDYAYYTSLVSEYNKSL 584

Query: 599 DEQNER 604
            ++ +R
Sbjct: 585 KDRQKR 590



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 163/382 (42%), Gaps = 9/382 (2%)

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           SG +  AI+ F+ ++  NF+  F+    L+D M  +    T    Y E+   G  P    
Sbjct: 166 SGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQY 225

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  LI  + K G +  A  +++E+R  G RP    F  +I    KS  LD    +   ME
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTME 285

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
                P   TYS L+      G++D A +L++ M   GLRP   T+TAL+    + + +D
Sbjct: 286 ENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRID 345

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A     +M TMG   D+   + L+  + K G V+ A + +  M   G++ +      L 
Sbjct: 346 SAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLI 405

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD---EQNERHLMAILSAT 613
           +   K    ESA  + +   E    +D V +T++++    C+D      ER L  ++ A 
Sbjct: 406 DGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGF--CRDGRVRDAERTLREMVEAG 463

Query: 614 KHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQIN 673
                A    +  G  ++    + F       I+   + G   Y  NVL+N L   GQ+ 
Sbjct: 464 MKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGH-KPGVITY--NVLMNGLCKQGQMK 520

Query: 674 RARCVWKVAYENKLFPKAIVFD 695
            A  + +      + P  I ++
Sbjct: 521 NANMLLEAMLNLGVTPDDITYN 542


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/500 (24%), Positives = 211/500 (42%), Gaps = 44/500 (8%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + ++  +KWGP+ E  L+ L        + + +K     +  +  FRWA ++  Y   
Sbjct: 59  RFIRILKIFKWGPDAEKALEVLMLKVDHWLVREVMKTDVGVNVKMQFFRWAAKKRNYEHD 118

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS--AYNRVIQYLAKADKLEMS 254
              Y+ L   L     +  M  +  EMV    +N + + +    + +I+ L  A  +  +
Sbjct: 119 TSTYMALIRCLEVVEQYGEMWKMIQEMV----RNPVCVVTPMELSDIIRMLGNAKMISKA 174

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIP 313
              F ++    C+   Q+YN ++ + +++G   K  E+Y  M  +G C  D  TY  +I 
Sbjct: 175 VAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALIS 234

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  K GR D+AI+L  EMK+   +P+  I+  L+    K   +  ++ ++ EM+    RP
Sbjct: 235 AFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRP 294

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  LI    KAG+ D A   + EMR  G RP+  +   +I    K+G+LD A+ +F
Sbjct: 295 DVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLF 354

Query: 434 TDM---------------------------------ER---AGFLPTPSTYSCLLEMHAS 457
            +M                                 ER   +G  P+P TYS L++    
Sbjct: 355 EEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCK 414

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           + + + AM L   M   G  P  + Y +L+  L K K  D+A ++  E+K    S     
Sbjct: 415 TNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARV 474

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
             V++ ++ K G +D A+     M   G   N +    L     +  + + A   +    
Sbjct: 475 YAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQ 534

Query: 577 ESAAKVDLVLYTSVLAHLVR 596
           E     D+  Y  +L  L +
Sbjct: 535 EHGCIPDINSYNIILNGLAK 554



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 183/361 (50%), Gaps = 9/361 (2%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           +N+   +L LF   + Q +  P    Y  L   L ++  FD   + F EM  +  +    
Sbjct: 274 LNNVHGALGLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTV 332

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEI 292
           +    N +I +L KA +L+ +   F+++    C     +YN ++  LF +K    +    
Sbjct: 333 VI---NNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSW 389

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +E M+    S    TY ++I    K+ R + A+ L +EM E+ F P    + SL+D++GK
Sbjct: 390 FERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 449

Query: 353 AGRLDTSMKVYMEM-QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           A R D + +++ E+ + CG   SA +Y  +I+   KAG+LD A+ L+DEM   G  PN  
Sbjct: 450 AKRYDIAHELFQELKENCGS-SSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVY 508

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +  ++   A++G LD A++    M+  G +P  ++Y+ +L   A +G    AM++ ++M
Sbjct: 509 AYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 568

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
             + ++P   +Y  +L  ++   L + AAK++ EM  +G+  D+     ++  I  G VD
Sbjct: 569 KQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAI--GKVD 626

Query: 532 H 532
           H
Sbjct: 627 H 627


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 138/596 (23%), Positives = 253/596 (42%), Gaps = 59/596 (9%)

Query: 126 KKPFL---NASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLS 182
           +KP+    N   V  I  V+    WGP  E  L  L F P+   +   L+ + D + ++ 
Sbjct: 24  EKPYTFEGNRQTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIE 83

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV------------------ 224
            FRW +R++      E Y  L  V+   R+FD +  +  EM                   
Sbjct: 84  YFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGC 143

Query: 225 --HDSSKNGISL------------FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
              +  + G  +            FSAY  +I   +  +  +M    F+++ +   +   
Sbjct: 144 VKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTV 203

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
             +  L+  F  +G    A  + + M+      D   Y + I S  K G++D A K F E
Sbjct: 204 HLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           ++    +P    + S++  + KA RLD +++++  ++     P    Y ++I  Y  AGK
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGK 323

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
            D A  L +  R  G  P+   +  I+    K GK+D A+ +F +M++    P  STY+ 
Sbjct: 324 FDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNI 382

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L++M   +G++D+A +L +SM  AGL P + T   ++  L K + +D A  +  EM    
Sbjct: 383 LIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV 442

Query: 511 YSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            + D ++   ++    K G VD A +    M  S  RTN+ +   L ++   +   E   
Sbjct: 443 CTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGH 502

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPE 629
            + +  +      DL L  + +  + +  + +  R +   +     KA  F+      P+
Sbjct: 503 KIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEI-----KARRFV------PD 551

Query: 630 QRKQPVL--SFVREFFHGIDYEL-----EEGA---ARYFVNVLLNYLVLMGQINRA 675
            R   +L    ++  F    YEL     E+G     R + N++++     G++N+A
Sbjct: 552 ARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAY-NIVIDGFCKCGKVNKA 606



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 210/468 (44%), Gaps = 13/468 (2%)

Query: 136 AKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVI---NDSDTSLSLFRWAKRQSW 192
            K+ +V   WK+  E+E    K    P  V  T  + V+   N  D ++ +F   ++   
Sbjct: 249 GKVGKVDMAWKFFHEIEANGLK----PDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNR- 303

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
            VP    Y  +      +  FD   SL +      +K  I    AYN ++  L K  K++
Sbjct: 304 RVPCTYAYNTMIMGYGSAGKFDEAYSLLE---RQRAKGSIPSVIAYNCILTCLRKMGKVD 360

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F++ +  D   +  +YN+L+ +    G    AFE+ +SM+K     +  T  +M+
Sbjct: 361 EALKVFEE-MKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMV 419

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L KS +LD A  +F+EM  +   P    F SL+D +GK GR+D + KVY +M     R
Sbjct: 420 DRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCR 479

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
            ++ +Y SLI+++   G+ +   +++ +M      P+  L    ++   K+G+ +   ++
Sbjct: 480 TNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F +++   F+P   +YS L+     +G  +   +L+ SM   G       Y  ++    K
Sbjct: 540 FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599

Query: 493 RKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
              V+ A ++L EMKT G+    V+   V+    K   +D A        S  I  N  I
Sbjct: 600 CGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVI 659

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              L +   K    + A  +LE  ++     +L  + S+L  LV+ ++
Sbjct: 660 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEE 707



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 160/333 (48%), Gaps = 6/333 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD-SSKNGISLFS 236
           DT+  L R + +++   P      ++ D L +S+  D   ++F+EM +   + + I+  S
Sbjct: 394 DTAFEL-RDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCS 452

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
               +I  L K  +++ +Y  ++K+LDSDC+ ++  Y  L+  F N G      +IY+ M
Sbjct: 453 ----LIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDM 508

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               CS D       +  + K+G  +    +F+E+K R F P    ++ L+  + KAG  
Sbjct: 509 INQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFA 568

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + +++  M+  G       Y  +I+ + K GK++ A +L +EM+  GF P    +  +
Sbjct: 569 NETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSV 628

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+  AK  +LD A  +F + +          YS L++     G++D A  +   +   GL
Sbjct: 629 IDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL 688

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            P L T+ +LL  L K + ++ A      MK +
Sbjct: 689 TPNLYTWNSLLDALVKAEEINEALVCFQSMKEL 721



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 170/368 (46%), Gaps = 5/368 (1%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           ++ +  N  R  DG   ++ +M++ +    + L + Y   +  + KA + E     F+++
Sbjct: 488 LIKNFFNHGRKEDGH-KIYKDMINQNCSPDLQLLNTY---MDCMFKAGEPEKGRAMFEEI 543

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
                  D +SY++L+   +  G   + +E++ SM++  C LD   Y ++I    K G++
Sbjct: 544 KARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKV 603

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           + A +L +EMK + F P+   + S++D + K  RLD +  ++ E +      +  +Y SL
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSL 663

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I+ + K G++D A  + +E+   G  PN   +  ++++  K+ +++ A+  F  M+    
Sbjct: 664 IDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKC 723

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   TY  L+       + + A   +  M   G++P   +YT +++ LAK   +  A  
Sbjct: 724 TPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGA 783

Query: 502 ILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +    K  G   D +  + ++  + +G+    A          G+  +N     L ++  
Sbjct: 784 LFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLH 843

Query: 561 KNALYESA 568
           KN   E A
Sbjct: 844 KNDCLEQA 851



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 137/309 (44%), Gaps = 35/309 (11%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I  L KA     +Y  F  + +  C +DT++YN+++  F   G   KA+++ E M
Sbjct: 554 SYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEM 613

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +         TY  +I  LAK  RLD A  LF+E K +    +  I++SL+D  GK GR+
Sbjct: 614 KTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRI 673

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR-------------------- 396
           D +  +  E+   G  P+   + SL+++  KA +++ AL                     
Sbjct: 674 DEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGIL 733

Query: 397 ---------------LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
                           W EM+  G +P+   +T +I   AK+G +  A ++F   +  G 
Sbjct: 734 INGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGG 793

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +P  + Y+ ++E  ++  +   A  L+      GL     T   LL  L K   ++ AA 
Sbjct: 794 VPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAI 853

Query: 502 ILLEMKTMG 510
           +   ++  G
Sbjct: 854 VGAVLRETG 862


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 198/451 (43%), Gaps = 18/451 (3%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V  +  ++ +  WGP  E  L  L  +       Q LK I D   +L  F W KRQ+ + 
Sbjct: 326 VENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQDHPVALGFFYWLKRQTGFK 385

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
                Y  +  +L  +R F  +  L  EMV D  +  +     YNR+I    +A+ L  +
Sbjct: 386 HDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVV---TYNRLIHSYGRANYLNEA 442

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F ++ ++ C+ D  +Y  L+ +    G    A  +Y+ M++   S D  TY ++I  
Sbjct: 443 VSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINC 502

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+G L +A KLF EM ++   P+   +  ++    KA    T++++Y +MQ  G +P 
Sbjct: 503 LGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPD 562

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  ++E     G L+ A  ++ EM+   + P+  ++ ++++   K G ++ +   + 
Sbjct: 563 KVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQ 622

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M  AG  P   T + LL       ++  A  L  SM   GL+P L TYT LL+   +  
Sbjct: 623 AMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTE-- 680

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYIK------DGS--VDHALRWLRFMGSSGIR 546
                A+   +M   G  + V+     M  +       DG    DH  ++L  M S    
Sbjct: 681 -----ARSSFDMGFCGELMAVTGHPAHMFLLSMPAAGPDGQNVRDHVSKFLDLMHSEDRE 735

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           +   +V  + +   K+ L E A  + E   +
Sbjct: 736 SKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ 766



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 187/383 (48%), Gaps = 5/383 (1%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           DG TY  M+  L ++ +  A  KL  EM     +P+   +  L+ S G+A  L+ ++ V+
Sbjct: 387 DGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVF 446

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
             MQ  G +P    Y +LI+ +AKAG LD AL ++ +M+ A   P+   +++II    K+
Sbjct: 447 DRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKA 506

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M   G +P   TY+ ++ + A +    +A++LY  M +AG +P   TY
Sbjct: 507 GHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTY 566

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           + ++ +L     ++ A  I  EMK   +  D     +L+ ++ K G+V+ +  W + M +
Sbjct: 567 SIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLN 626

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G+  N      L  + ++      A  LL++ +    +  L  YT +L+     +   +
Sbjct: 627 AGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFD 686

Query: 603 ERHLMAILSATKHKAHAFLCGL-FTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNV 661
                 +++ T H AH FL  +   GP+   Q V   V +F   +  E  E + R  V+ 
Sbjct: 687 MGFCGELMAVTGHPAHMFLLSMPAAGPD--GQNVRDHVSKFLDLMHSEDRE-SKRGLVDA 743

Query: 662 LLNYLVLMGQINRARCVWKVAYE 684
           ++++L   G    A  VW+VA +
Sbjct: 744 VVDFLHKSGLKEEAGSVWEVAAQ 766


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  162 bits (411), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 202/426 (47%), Gaps = 8/426 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  +  ++ +P   C  +L  ++N +     + + + E++       +     YN
Sbjct: 172 AIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVT-IWTFYSEILEYGFPPKVQY---YN 227

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I    K   +  +   F ++     +  T S+N L+          + F + ++ME+ 
Sbjct: 228 ILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEEN 287

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K GRLD A +LF EM++R  RP+   F +L+D   ++ R+D++
Sbjct: 288 RIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSA 347

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M  Y +M   G +P   MY +L+    K G ++ A +L DEM++ G +P+   +T +I+ 
Sbjct: 348 MNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDG 407

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ AM I   M   G +     ++ L+      G+V  A +    M  AG++P 
Sbjct: 408 YCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPD 467

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
            +TYT ++    K+  V +  K+L EM+  G+   V   +VLM  + K G + +A   L 
Sbjct: 468 DATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLE 527

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
            M + G+  ++     L E   KN     A+ LL+   E    VD   YTS+++   +  
Sbjct: 528 AMLNLGVTPDDITYNILLEGHCKNG---KAEDLLKLRNEKGLIVDYAYYTSLVSEYNKSL 584

Query: 599 DEQNER 604
            ++ +R
Sbjct: 585 KDRQKR 590



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 163/382 (42%), Gaps = 9/382 (2%)

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           SG +  AI+ F+ ++  NF+  F+    L+D M  +    T    Y E+   G  P    
Sbjct: 166 SGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQY 225

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  LI  + K G +  A  +++E+R  G RP    F  +I    KS  LD    +   ME
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTME 285

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
                P   TYS L+      G++D A +L++ M   GLRP   T+TAL+    + + +D
Sbjct: 286 ENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMD 345

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A     +M TMG   D+   + L+  + K G V+ A + +  M   G++ +      L 
Sbjct: 346 SAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLI 405

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD---EQNERHLMAILSAT 613
           +   K    ESA  + +   E    +D V +T++++    C+D      ER L  ++ A 
Sbjct: 406 DGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGF--CRDGRVRDAERTLREMVEAG 463

Query: 614 KHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQIN 673
                A    +  G  ++    + F       I+   + G   Y  NVL+N L   GQ+ 
Sbjct: 464 MKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGH-KPGVITY--NVLMNGLCKQGQMK 520

Query: 674 RARCVWKVAYENKLFPKAIVFD 695
            A  + +      + P  I ++
Sbjct: 521 NANMLLEAMLNLGVTPDDITYN 542


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  162 bits (411), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 138/596 (23%), Positives = 252/596 (42%), Gaps = 59/596 (9%)

Query: 126 KKPFL---NASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLS 182
           +KP+    N   V  I  V+    WGP  E  L  L F P+   +   L+ + D + ++ 
Sbjct: 24  EKPYTFEGNRQIVNDICNVLETGAWGPSAENALSALNFKPQPEFVIGVLRRLKDVNRAIE 83

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV------------------ 224
            FRW +R++      E Y  L  V+   R+FD +  +  EM                   
Sbjct: 84  YFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSC 143

Query: 225 --HDSSKNGISL------------FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
              +  + G  +            FSAY  +I   +  +  +M    F+++ +   +   
Sbjct: 144 VKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTV 203

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
             +  L+  F  +G    A  + + M+      D   Y + I S  K G++D A K F E
Sbjct: 204 HLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           ++    +P    + S++  + KA RLD +++++  ++     P    Y ++I  Y  AGK
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGK 323

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
            D A  L +  R  G  P+   +  I+    K GK+D A+ +F +M++    P  STY+ 
Sbjct: 324 FDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDA-APNLSTYNI 382

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L++M   +G++D A +L +SM  AGL P + T   ++  L K + +D A  I  +M    
Sbjct: 383 LIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKV 442

Query: 511 YSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            + D ++   ++    K G VD A +    M  S  RTN+ +   L ++   +   E   
Sbjct: 443 CTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGH 502

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPE 629
            + +  V      DL L  + +  + +  + +  R +   +     K+  F+      P+
Sbjct: 503 KIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEI-----KSRRFV------PD 551

Query: 630 QRKQPVL--SFVREFFHGIDYEL-----EEGA---ARYFVNVLLNYLVLMGQINRA 675
            R   +L    ++  F    YEL     E+G     R + N++++     G++N+A
Sbjct: 552 ARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAY-NIVIDGFCKCGKVNKA 606



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 210/468 (44%), Gaps = 13/468 (2%)

Query: 136 AKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVI---NDSDTSLSLFRWAKRQSW 192
            K+ +V   WK+  E+E    K    P  V  T  + V+   N  D ++ +F   ++   
Sbjct: 249 GKVGKVDMAWKFFHEIEANGLK----PDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNR- 303

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
            VP    Y  +      +  FD   SL +      +K  I    AYN ++  L K  K++
Sbjct: 304 RVPCTYAYNTMIMGYGSAGKFDEAYSLLE---RQRAKGSIPSVIAYNCILTCLRKMGKVD 360

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F++ +  D   +  +YN+L+ +    G    AFE+ +SM+K     +  T  +M+
Sbjct: 361 EALRVFEE-MKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMV 419

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L KS +LD A  +F++M  +   P    F SL+D +GK GR+D + K+Y +M     R
Sbjct: 420 DRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCR 479

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
            ++ +Y SLI+++   G+ +   +++ +M      P+  L    ++   K+G+ +   ++
Sbjct: 480 TNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F +++   F+P   +YS L+     +G  +   +L+ SM   G       Y  ++    K
Sbjct: 540 FEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599

Query: 493 RKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
              V+ A ++L EMKT G+    V+   V+    K   +D A        S  I  N  I
Sbjct: 600 CGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVI 659

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              L +   K    + A  +LE  ++     ++  + S+L  LV+ ++
Sbjct: 660 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEE 707



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 170/368 (46%), Gaps = 5/368 (1%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           ++ +  N  R  DG   ++ +MV+ +    + L + Y   +  + KA + E     F+++
Sbjct: 488 LIKNFFNHGRKEDGH-KIYKDMVNQNCSPDLQLLNTY---MDCMFKAGEPEKGRAMFEEI 543

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
                  D +SY++L+   +  G   + +E++ SM++  C LD   Y ++I    K G++
Sbjct: 544 KSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKV 603

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           + A +L +EMK + F P+   + S++D + K  RLD +  ++ E +      +  +Y SL
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSL 663

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I+ + K G++D A  + +E+   G  PN   +  ++++  K+ +++ A+  F  M+    
Sbjct: 664 IDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKC 723

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   TY  L+       + + A   +  M   G++P   +YT +++ LAK   +  A  
Sbjct: 724 TPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGA 783

Query: 502 ILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +    K  G   D +  + ++  + +G+    A          G+  +N     L ++  
Sbjct: 784 LFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLH 843

Query: 561 KNALYESA 568
           KN   E A
Sbjct: 844 KNDCLEQA 851



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 156/327 (47%), Gaps = 5/327 (1%)

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD-SSKNGISLFSAYNRVI 242
            R + +++   P      ++ D L +S+  D   ++F++M +   + + I+  S    +I
Sbjct: 399 LRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCS----LI 454

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
             L K  +++ +Y  ++K+LDSDC+ ++  Y  L+  F N G      +IY+ M    CS
Sbjct: 455 DGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCS 514

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
            D       +  + K+G  +    +F+E+K R F P    ++ L+  + KAG  + + ++
Sbjct: 515 PDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYEL 574

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           +  M+  G       Y  +I+ + K GK++ A +L +EM+  GF P    +  +I+  AK
Sbjct: 575 FYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK 634

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
             +LD A  +F + +          YS L++     G++D A  +   +   GL P + T
Sbjct: 635 IDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYT 694

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTM 509
           + +LL  L K + ++ A      MK +
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKEL 721



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 137/309 (44%), Gaps = 35/309 (11%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I  L KA     +Y  F  + +  C +DT++YN+++  F   G   KA+++ E M
Sbjct: 554 SYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEM 613

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +         TY  +I  LAK  RLD A  LF+E K +    +  I++SL+D  GK GR+
Sbjct: 614 KTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRI 673

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR-------------------- 396
           D +  +  E+   G  P+   + SL+++  KA +++ AL                     
Sbjct: 674 DEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGIL 733

Query: 397 ---------------LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
                           W EM+  G +P+   +T +I   AK+G +  A ++F   +  G 
Sbjct: 734 INGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGG 793

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +P  + Y+ ++E  ++  +   A  L+      GL     T   LL  L K   ++ AA 
Sbjct: 794 VPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQAAI 853

Query: 502 ILLEMKTMG 510
           +   ++  G
Sbjct: 854 VGAVLRETG 862


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 219/502 (43%), Gaps = 49/502 (9%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + ++  +KWGP+ E  L+ L+       + + LK+  +    +  F+WA ++  +   
Sbjct: 64  RFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNFEHD 123

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
              Y+ L   L+E+     M     EMV  +   G +  S    +++ L KA  +  +  
Sbjct: 124 STTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLS---EIVKVLGKAKMVNKALS 180

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSL 315
            F ++    CK  + +YN ++ + + +G   K  E+Y  M  +G+C  D  TY  +I + 
Sbjct: 181 IFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAF 240

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            K GR D+AI LF EMKE    P+  I+ +++    K GR++ ++ +  EM+  G   + 
Sbjct: 241 GKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTV 300

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y  LI+   KAGK++ A  ++  M   G +P+  L   +I    K+G+L  A+ +F +
Sbjct: 301 YTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEE 360

Query: 436 ME-----------------------RA-------------GFLPTPSTYSCLLEMHASSG 459
           ME                       RA             G +P+  TYS L++    + 
Sbjct: 361 MESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTN 420

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK-TMGYSVDVSAS 518
           +V+ A+ L   M   G  P  + Y +L+  L K K  + A ++  E++   GY    S++
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGY----SSA 476

Query: 519 DVLMVYIKD----GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
            V  V IK     G +  A+     M   G   + +    L    ++  + + A  LL T
Sbjct: 477 RVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRT 536

Query: 575 YVESAAKVDLVLYTSVLAHLVR 596
             E+    DL  +  +L    R
Sbjct: 537 MEENGCTPDLNSHNIILNGFAR 558



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 178/357 (49%), Gaps = 6/357 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   + ++   +   S+F  M+ +  K  + L    N +I  L KA +L  +   F+
Sbjct: 303 YTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLI---NNLINLLGKAGRLADAIKLFE 359

Query: 260 KVLDSDCKIDTQSYN-VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           ++    C  +  +YN V+  LF +K    +AF  YE M++        TY ++I    K+
Sbjct: 360 EMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKT 419

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPM 377
            R++ A+ L +EM E+ F P    + SL++++GKA R + + +++ E+ + CG+  SA +
Sbjct: 420 NRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGY-SSARV 478

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  +I+   K G+L  A+ L++EM+  G  P+   +  ++    + G  D A S+   ME
Sbjct: 479 YAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTME 538

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P  ++++ +L   A +G    A++++  M ++ ++P + +Y  +L  L++  + +
Sbjct: 539 ENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFE 598

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
            AAK++ EM + G+  D+     ++  +     DH       M    I+  N + R+
Sbjct: 599 EAAKLMKEMNSKGFEYDLITYSSILEAVGKIDEDHTPAGQTVMHIVNIKIINLVRRE 655


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/537 (23%), Positives = 222/537 (41%), Gaps = 87/537 (16%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + ++  +KWGP+ E  L+ L        + + +K     +  +  FRWA ++  Y   
Sbjct: 30  RFIRILKIFKWGPDAEKALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKRRNYEHD 89

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS--AYNRVIQYLAKADKLEMS 254
              Y+ L   L     +  M  +  EMV    +N I + +    + V++ L  A  +  +
Sbjct: 90  TSTYMALIHCLEVVEQYGEMWKMIQEMV----RNPICVVTPTELSDVVRMLGNAKMVRQA 145

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-KGECSLDGSTYELMIP 313
              F ++    C+   Q+YN ++ + +++G   K  ++Y  M  +G C  D  TY  +I 
Sbjct: 146 ITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALIS 205

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNI------------------------------- 342
           +  K GR D+AI+L  EMKE   +P+  I                               
Sbjct: 206 AFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRP 265

Query: 343 ----FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               +  L+  +GKAGR+D +   + EMQ  G RP      ++I    KAG+LD A++L+
Sbjct: 266 DVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLF 325

Query: 399 DEMRI------------------------------------AGFRPNFGLFTMIIESHAK 422
            EM                                      +G  P+   ++++I+   K
Sbjct: 326 QEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCK 385

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           + +++ AM +  +M+  GF P P+ Y  L++    + + D A +L+  +           
Sbjct: 386 TNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARV 445

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMG 541
           Y  ++  L K   +D A  +  EM  +G + DV A + LM  + + G +D AL  +R M 
Sbjct: 446 YAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQ 505

Query: 542 SSG----IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             G    I + N I+  L     K      A  +L    +S  + D+V Y +VL  L
Sbjct: 506 EHGCIPDINSYNIILNGL----AKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGAL 558



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 185/360 (51%), Gaps = 9/360 (2%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           ND+  +LSLF   + Q +  P    Y  L   L ++   D     F EM  +  +     
Sbjct: 246 NDAHGALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVF 304

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEIY 293
               N +I +L KA +L+ +   F+++    C     +YN ++  LF +K    +    +
Sbjct: 305 M---NNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWF 361

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           E M++   S    TY ++I    K+ R++ A+ L +EM E+ F P    + SL+D++GKA
Sbjct: 362 ERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 421

Query: 354 GRLDTSMKVYMEM-QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            R D + +++ E+ + CG   SA +Y  +I+   KAG+LD A+ ++DEM   G  P+   
Sbjct: 422 KRYDLACELFQELKENCG-SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYA 480

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  ++   A++G LD A+S    M+  G +P  ++Y+ +L   A +G    AM++ ++M 
Sbjct: 481 YNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMK 540

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDH 532
            + +RP + +Y  +L  L+   + + A+K++ EM T+G+  D+     ++  I  G VDH
Sbjct: 541 QSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAI--GKVDH 598


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 213/436 (48%), Gaps = 10/436 (2%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H+   L+ +  + T++S FRWA  Q+ +      Y  L ++L   +++    ++ +EM+ 
Sbjct: 88  HVAAVLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEML- 146

Query: 226 DSSKNGIS--LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
              K GI+   FS +N +I+  A+  + + +  CF+ +    CK D  ++ +L+      
Sbjct: 147 ---KAGIAPNTFS-FNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKA 202

Query: 284 GLPYKAFEIY-ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           G+  KAFE++ E M  G    D + +  M+ +L K+ R+  A ++F +M++  F P    
Sbjct: 203 GMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIA 262

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           + +++D + KAG    ++KV   M      P+   Y  L+ S  KAG L+ A  L+  M 
Sbjct: 263 YNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMA 322

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
            +GFRPN  ++T +I   AKSG++  A S+F +M  AG+ P   T++ +++    SG  +
Sbjct: 323 ASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFE 382

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVL 521
            A K +  M   G +P + TYT ++  L+K   V  A +I+  M   G   D V+   +L
Sbjct: 383 QAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLL 442

Query: 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAA 580
             + K G +D A + L  +       N  +   L +  C   ++  +   L E    +A 
Sbjct: 443 DGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAE 502

Query: 581 KVDLVLYTSVLAHLVR 596
            +D  L  S++  L +
Sbjct: 503 NLDPGLCCSIIVGLCK 518



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 195/456 (42%), Gaps = 48/456 (10%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           ++ Y P    + ++ D L +S +F+     F+EM+    K  +     Y  +IQ L+K  
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVV---TYTTIIQGLSKIG 414

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF---------------LNKGLPYKAFEIYE 294
           ++  ++   K ++   C  D+ +Y  L+  F               L+K       ++Y 
Sbjct: 415 RVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYS 474

Query: 295 SMEKGECSLDGSTYE-----------------------LMIPSLAKSGRLDAAIKLFQEM 331
           S+ KG C  DG + E                        +I  L K+GRLD A ++FQ M
Sbjct: 475 SLVKGLC--DGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRM 532

Query: 332 KERNFRPSFNIFASLVDSMGKA--GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
                +P    +  L++ + ++   R++ +  +  +++  G+ P A  Y  L     K G
Sbjct: 533 VSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIG 592

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++D A+++ +E    G+  +   +T +       G++D A+S+F +M R G  P  + Y 
Sbjct: 593 EVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYC 652

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
           C++       +++ A K ++ M   G +P ++TYTAL+  L     VD A      M   
Sbjct: 653 CIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLAR 712

Query: 510 GYSV-DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
           G  V  V   D L+  + K   VD AL+    M S G          LF+  +++   E 
Sbjct: 713 GELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEK 772

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
           A+ LL+      +      +T++L  L R  DE  +
Sbjct: 773 AQELLQEMAAGGSPPHAATFTAILDGL-RKSDESGK 807



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 151/367 (41%), Gaps = 44/367 (11%)

Query: 142 VNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS----DTSLSLFRWAKRQSWYV-PG 196
           + R     +L  +LDK    P +   +  +K + D     +T   LF  +K  +  + PG
Sbjct: 448 LGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPG 507

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK----------NGISLFSAYNRVIQYLA 246
             C +++   L ++   D    +F  MV +  K          NG+   S  NRV +  A
Sbjct: 508 LCCSIIVG--LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCR-SRENRVERAFA 564

Query: 247 KADKLEM-----SYCCFKKVLDSDCKI--------------------DTQSYNVLMTLFL 281
               LEM         +  +    CKI                    D  +Y  L T   
Sbjct: 565 LLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLC 624

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
            +G   +A  +++ M +   + D + Y  +I  L K  +L+ A K F EM  +  +P+  
Sbjct: 625 YQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVA 684

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM-YVSLIESYAKAGKLDTALRLWDE 400
            + +LV ++  AG +D +   +  M   G    + M Y +LI  + KA K+D AL+L+++
Sbjct: 685 TYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFED 744

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M   G  P       + +   +SGK + A  +  +M   G  P  +T++ +L+    S +
Sbjct: 745 MISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDE 804

Query: 461 VDSAMKL 467
               +KL
Sbjct: 805 SGKLLKL 811



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 8/262 (3%)

Query: 143 NRWKWGPELETQLDKLQFVPKMVHITQ---ALKVINDSDTSLSLFRWAKRQSWYVPGDEC 199
           NR +    L   L+ + ++P  V  T     L  I + D ++ +   A  + W       
Sbjct: 557 NRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNAD-VVA 615

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L      D  +SLF EMV    + G    +AY  +I  L K  KLE +   F 
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEMVR---QGGAPDAAAYCCIINGLIKGKKLEDACKFFD 672

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKS 318
           +++    K    +Y  L+    + G   +AF  +E M  +GE       Y+ +I    K+
Sbjct: 673 EMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKA 732

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
            ++DAA+KLF++M  R   P+    ASL D + ++G+ + + ++  EM   G  P A  +
Sbjct: 733 LKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATF 792

Query: 379 VSLIESYAKAGKLDTALRLWDE 400
            ++++   K+ +    L+L  E
Sbjct: 793 TAILDGLRKSDESGKLLKLVQE 814



 Score = 40.4 bits (93), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 77/193 (39%), Gaps = 2/193 (1%)

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           +I  +M +AG  P   +++ L+   A + + D A+  +  M     +P L T+  L+  L
Sbjct: 140 AIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCL 199

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV--YIKDGSVDHALRWLRFMGSSGIRTN 548
            K  + + A ++  EM  MG+     A    MV   +K   V  A      M   G   +
Sbjct: 200 CKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPD 259

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
                 + +   K    + A  +L+  +  A     V Y  ++  L +    +    L  
Sbjct: 260 AIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFR 319

Query: 609 ILSATKHKAHAFL 621
           +++A+  + ++ +
Sbjct: 320 VMAASGFRPNSVI 332


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 219/502 (43%), Gaps = 49/502 (9%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + ++  +KWGP+ E  L+ L+       + + LK+  +    +  F+WA ++  +   
Sbjct: 64  RFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNFEHD 123

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
              Y+ L   L+E+     M     EMV  +   G +  S    +++ L KA  +  +  
Sbjct: 124 STTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLS---EIVKVLGKAKMVNKALS 180

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSL 315
            F ++    CK  + +YN ++ + + +G   K  E+Y  M  +G+C  D  TY  +I + 
Sbjct: 181 IFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAF 240

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            K GR D+AI LF EMKE    P+  I+ +++    K GR++ ++ +  EM+  G   + 
Sbjct: 241 GKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTV 300

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y  LI+   KAGK++ A  ++  M   G +P+  L   +I    K+G+L  A+ +F +
Sbjct: 301 YTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEE 360

Query: 436 ME-----------------------RA-------------GFLPTPSTYSCLLEMHASSG 459
           ME                       RA             G +P+  TYS L++    + 
Sbjct: 361 MESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTN 420

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK-TMGYSVDVSAS 518
           +V+ A+ L   M   G  P  + Y +L+  L K K  + A ++  E++   GY    S++
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGY----SSA 476

Query: 519 DVLMVYIKD----GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
            V  V IK     G +  A+     M   G   + +    L    ++  + + A  LL T
Sbjct: 477 RVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRT 536

Query: 575 YVESAAKVDLVLYTSVLAHLVR 596
             E+    DL  +  +L    R
Sbjct: 537 MEENGCTPDLNSHNIILNGFAR 558



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 171/336 (50%), Gaps = 6/336 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   + ++   +   S+F  M+ +  K  + L    N +I  L KA +L  +   F+
Sbjct: 303 YTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLI---NNLINLLGKAGRLADAIKLFE 359

Query: 260 KVLDSDCKIDTQSYN-VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           ++    C  +  +YN V+  LF +K    +AF  YE M++        TY ++I    K+
Sbjct: 360 EMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKT 419

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPM 377
            R++ A+ L +EM E+ F P    + SL++++GKA R + + +++ E+ + CG+  SA +
Sbjct: 420 NRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGY-SSARV 478

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  +I+   K G+L  A+ L++EM+  G  P+   +  ++    + G  D A S+   ME
Sbjct: 479 YAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTME 538

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P  ++++ +L   A +G    A++++  M ++ ++P + +Y  +L  L++  + +
Sbjct: 539 ENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFE 598

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHA 533
            AAK++ EM + G+  D+     ++  +     DH 
Sbjct: 599 EAAKLMKEMNSKGFEYDLITYSSILEAVGKIDEDHT 634


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/506 (24%), Positives = 214/506 (42%), Gaps = 50/506 (9%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + ++  +KWGP+ E  L+ L        + + +K     +  +  FRWA ++  Y   
Sbjct: 63  RFIRILKIFKWGPDAEKALEVLMLRVDHWLVREIMKTDIGVNVKMQFFRWAAKRRNYEHD 122

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS--AYNRVIQYLAKADKLEMS 254
              Y+ L   L     +  M  +  EMV    +N I + +    + V++ L  A  +  +
Sbjct: 123 TSTYMALIHCLEVVEQYGEMWKMIQEMV----RNPICVVTPTELSEVVRMLGNAKMVSKA 178

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-KGECSLDGSTYELMIP 313
              F ++    C+   Q+YN ++ + +++G   K  E+Y  M  +G C  D  TY  +I 
Sbjct: 179 IAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALIS 238

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  K GR D+AI+L  EMK+   +P+  I+  LV    K   +  ++ ++ EM+    RP
Sbjct: 239 AFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRP 298

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  LI    KAG++D A   + EM+  G RP+  +   +I    K+G+LD AM +F
Sbjct: 299 DVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLF 358

Query: 434 TD------------------------------------MERAGFLPTPSTYSCLLEMHAS 457
            +                                    M+ +G  P+  TYS L++    
Sbjct: 359 QEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCK 418

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           + +++ AM L   M   G  P  + Y +L+  L K K  D+A ++  E+K    +   S+
Sbjct: 419 TNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE---NCGSSS 475

Query: 518 SDVLMVYIKD----GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           S V  V IK     G +D A+     M   G   + +    L     +  + + A   + 
Sbjct: 476 SRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMR 535

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQD 599
              E     D+  Y  +L  L + +D
Sbjct: 536 RMQEHGCIPDINSYNIILNGLQKQED 561



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 122/296 (41%), Gaps = 40/296 (13%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           +ND   +LSLF   + Q +  P    Y  L   L ++   D     F EM  +  +    
Sbjct: 278 LNDVHGALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTI 336

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEI 292
           +    N +I +L KA +L+ +   F+++    C     +YN ++  LF +K    +    
Sbjct: 337 VM---NNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSW 393

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +E M++   S    TY ++I    K+ R++ A+ L +EM E+ F P    + SL+D++GK
Sbjct: 394 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 353 -----------------------------------AGRLDTSMKVYMEMQGCGHRPSAPM 377
                                              AGRLD ++ ++ EM   G  P    
Sbjct: 454 AKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYA 513

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           Y +L+   A+ G LD AL     M+  G  P+   + +I+    K   L +    F
Sbjct: 514 YNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQEDLIVQWRCF 569


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 213/436 (48%), Gaps = 10/436 (2%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H+   L+ +  + T++S FRWA  Q+ +      Y  L ++L   +++    ++ +EM+ 
Sbjct: 88  HVAAVLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEML- 146

Query: 226 DSSKNGIS--LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
              K GI+   FS +N +I+  A+  + + +  CF+ +    CK D  ++ +L+      
Sbjct: 147 ---KAGIAPNTFS-FNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKA 202

Query: 284 GLPYKAFEIY-ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           G+  KAFE++ E M  G    D + +  M+ +L K+ R+  A ++F +M++  F P    
Sbjct: 203 GMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIA 262

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           + +++D + KAG    ++KV   M      P+   Y  L+ S  KAG L+ A  L+  M 
Sbjct: 263 YNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMA 322

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
            +GFRPN  ++T +I   AKSG++  A S+F +M  AG+ P   T++ +++    SG  +
Sbjct: 323 ASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFE 382

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVL 521
            A K +  M   G +P + TYT ++  L+K   V  A +I+  M   G   D V+   +L
Sbjct: 383 QAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLL 442

Query: 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAA 580
             + K G +D A + L  +       N  +   L    C   ++ ++   L E    +A 
Sbjct: 443 DGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAE 502

Query: 581 KVDLVLYTSVLAHLVR 596
            +D  L  S++  L +
Sbjct: 503 TLDPGLCCSIIVGLCK 518



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 149/330 (45%), Gaps = 6/330 (1%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           S + P    Y  L     +S       SLFDEMV    +  +     +  +I  L K+  
Sbjct: 324 SGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVI---THTVMIDGLCKSGN 380

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
            E +   F++++   CK +  +Y  ++      G    AF I + M    C  D  TY  
Sbjct: 381 FEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYIC 440

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++    K GRLD A +L  E+ + +  P+  +++SLV+ +   G ++ ++    E     
Sbjct: 441 LLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAA 500

Query: 371 HRPSAP-MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS--GKLD 427
                P +  S+I    K G+LD A R++  M   G +P+   + ++I    +S   +++
Sbjct: 501 AETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVE 560

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A ++  D+E+ G+LP   TY+ L       G+VD A+K+    +S G    +  YTAL 
Sbjct: 561 RAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALC 620

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           T L  +  VD A  +  EM   G + D +A
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQGGAPDAAA 650



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 170/427 (39%), Gaps = 48/427 (11%)

Query: 120 VMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDT 179
           VM+ G+ K   N    AK  E + R    P + T    +Q + K+  +  A +++     
Sbjct: 370 VMIDGLCKSG-NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMK---- 424

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
                          P    Y+ L D   +    D    L DE+   SS   + L+S+  
Sbjct: 425 -------GMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLV 477

Query: 240 RVI---------------QYLAKADKLEMSYCC------------------FKKVLDSDC 266
             +               Q  A A+ L+   CC                  F++++   C
Sbjct: 478 NGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGC 537

Query: 267 KIDTQSYNVLMTLFLN--KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
           K D  +YN+L+       +    +AF +   +EK     D  TY  +   L K G +D A
Sbjct: 538 KPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRA 597

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
           +K+ +E   R +      + +L   +   G++D ++ ++ EM   G  P A  Y  +I  
Sbjct: 598 VKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIING 657

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM-ERAGFLP 443
             K  KL+ A + +DEM   G +P    +T ++++   +G +D A   F  M  R   + 
Sbjct: 658 LIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVG 717

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
           +   Y  L+     + +VD+A+KL+  M S G  P   T  +L   L +    + A ++L
Sbjct: 718 SVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELL 777

Query: 504 LEMKTMG 510
            EM   G
Sbjct: 778 QEMAAGG 784



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 119/262 (45%), Gaps = 8/262 (3%)

Query: 143 NRWKWGPELETQLDKLQFVPKMVHITQ---ALKVINDSDTSLSLFRWAKRQSWYVPGDEC 199
           NR +    L   L+K+ ++P  V  T     L  I + D ++ +   A  + W       
Sbjct: 557 NRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNAD-VVA 615

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L      D  +SLF EMV    + G    +AY  +I  L K  KLE +   F 
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEMVR---QGGAPDAAAYCCIINGLIKVKKLEDACKFFD 672

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKS 318
           +++    K    +Y  L+    + G   +AF  +ESM  +GE       Y+ +I    K+
Sbjct: 673 EMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKA 732

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
            ++DAA+KLF++M  R   P+    ASL D + ++G+ + + ++  EM   G  P A  +
Sbjct: 733 LKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATF 792

Query: 379 VSLIESYAKAGKLDTALRLWDE 400
            ++++   K+ +    L+L  E
Sbjct: 793 TAILDGLRKSDESGKLLKLVQE 814



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 1/200 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y  L T    +G   +A  +++ M +   + D + Y  +I  L K  +L+ A K F
Sbjct: 612 DVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFF 671

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM-YVSLIESYAK 387
            EM  +  +P+   + +LV ++  AG +D +   +  M   G    + M Y +LI  + K
Sbjct: 672 DEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCK 731

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           A K+D AL+L+++M   G  P       + +   +SGK + A  +  +M   G  P  +T
Sbjct: 732 ALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAAT 791

Query: 448 YSCLLEMHASSGQVDSAMKL 467
           ++ +L+    S +    +KL
Sbjct: 792 FTAILDGLRKSDESGKLLKL 811



 Score = 40.4 bits (93), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 41/220 (18%), Positives = 85/220 (38%), Gaps = 2/220 (0%)

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
           AGF+ +   +  ++             +I  +M +AG  P   +++ L+   A + + D 
Sbjct: 113 AGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADD 172

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523
           A+  +  M     +P L T+  L+  L K  + + A ++  EM  MG+     A    MV
Sbjct: 173 AVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMV 232

Query: 524 --YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
              +K   V  A      M   G   +      + +   K    + A  +L+  +  A  
Sbjct: 233 RTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV 292

Query: 582 VDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
              V Y  ++  L +    +    L  +++A+  + ++ +
Sbjct: 293 PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVI 332


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/504 (24%), Positives = 225/504 (44%), Gaps = 52/504 (10%)

Query: 137 KIVEVVNRWKWGPELETQLD--KLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           + + ++  +KWGP+ E  L+  KL+   ++VH  + LK+  + +  +  F+WA ++  + 
Sbjct: 67  RFIRILKIFKWGPDAEKALEVLKLKVDHRLVH--EVLKIDVEINVKIQFFKWAGKRRNFE 124

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY-NRVIQYLAKADKLEM 253
                ++ L   L+E+  +  M     +MV  S+     + S Y + +++ L KA  +  
Sbjct: 125 HDSSSFMALIHSLDEAGFYGEMWKTIQDMVRSST---CVISSVYLSEIVKLLGKAKMVNK 181

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMI 312
           +   F ++    CK    +YN ++ +   +G   K  EIY  M   G C  D  TY  +I
Sbjct: 182 ALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALI 241

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL-------------------------- 346
            +  K G  D+AI+LF EMKE    P+  I+ +L                          
Sbjct: 242 SAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCT 301

Query: 347 ---------VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
                    +  +GKAGR+D + +V+++M   G +P   +  SLI    K G+L+  L+L
Sbjct: 302 LTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKL 361

Query: 398 WDEMRIAGFRPNFGLFTMII----ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           + +M     +PN   +  +I    E  A + +   A S F  M+  G  P+  TYS L++
Sbjct: 362 FRKMESWQCKPNVVTYNTVIKALFECKAPASE---AASWFEKMKGCGIAPSSFTYSILID 418

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK-TMGYS 512
               + +++ A+ L   M   G  P  + Y +L+  L K K  + A ++ LE+K   G+S
Sbjct: 419 GFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHS 478

Query: 513 VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
                + ++  + K G +  A+     M   G + + +    L    ++  + + A+ LL
Sbjct: 479 SARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLL 538

Query: 573 ETYVESAAKVDLVLYTSVLAHLVR 596
            T  E+    DL  +  +L  L R
Sbjct: 539 RTMDENGCSPDLNSHNIILNGLAR 562



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 182/354 (51%), Gaps = 23/354 (6%)

Query: 163 KMVHITQALKVIN---DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSL 219
           K+  + +AL VI    D   +L++F + +    ++ G          L ++   D    +
Sbjct: 281 KLDKVEKALDVIKEMKDKGCTLTVFTYTE----WIKG----------LGKAGRVDDAYRV 326

Query: 220 FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN-VLMT 278
           F +M+ D  K  + L    N +I  L K  +LE++   F+K+    CK +  +YN V+  
Sbjct: 327 FLDMIKDGCKPDVVLI---NSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKA 383

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
           LF  K    +A   +E M+    +    TY ++I    K+ R++ A+ L +EM E+ F P
Sbjct: 384 LFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPP 443

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
               + SL++S+GK  R + + ++++E+ + CGH  SA +Y  +I+ + K G+L  A+ L
Sbjct: 444 CPAAYCSLINSLGKVKRYEAANELFLELKENCGH-SSARVYAVMIKHFGKCGRLSEAVDL 502

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           ++EM   G +P+   +  ++    ++G +D A S+   M+  G  P  ++++ +L   A 
Sbjct: 503 FNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLAR 562

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +G  D A++++  M S+ ++P   +Y  +L  L+   L + AAK++ EM   G+
Sbjct: 563 TGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGF 616


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/500 (24%), Positives = 210/500 (42%), Gaps = 44/500 (8%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + ++  +KWGP+ E  L+ L        + + +K        +  FRWA R+  Y   
Sbjct: 59  RFIRILKIFKWGPDAEKALEVLMMKVDHWLVREVMKTDVGVSVKMQFFRWAARKRNYEHD 118

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS--AYNRVIQYLAKADKLEMS 254
              Y+ L   L     +  M  +  EMV    +N + + +    + +I+ L  A  +  +
Sbjct: 119 TSTYMALIRCLEVVEQYGEMWKMIQEMV----RNPVCVVTPMELSDIIRMLGNAKMISKA 174

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIP 313
              F ++    C+    +YN ++ + +++G   K  E+Y  M  +G+C  D  TY  +I 
Sbjct: 175 VAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALIS 234

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  K GR D+AI L  EMK+   +P+  I+  L+  + K   +  ++ ++ EM+    RP
Sbjct: 235 AFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRP 294

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  LI    KAG+LD A   + EMR  G RP+  L   +I    K+G+LD A+ +F
Sbjct: 295 DVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLF 354

Query: 434 TDMER------------------------------------AGFLPTPSTYSCLLEMHAS 457
            +ME                                     +G  P+P TYS L++    
Sbjct: 355 EEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCK 414

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           + + + AM L   M   G  P  + Y +L+  L K K  D+A ++  E+K    S     
Sbjct: 415 TNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARV 474

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
             V++ ++ K G +D A+     M   G   N +    L     +  + + A   +    
Sbjct: 475 YAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQ 534

Query: 577 ESAAKVDLVLYTSVLAHLVR 596
           +     D+  Y  +L  L +
Sbjct: 535 DHGCIPDINSYNIILNALAK 554



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 178/375 (47%), Gaps = 43/375 (11%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P  + Y ML  +L +  +  G L LF+EM H   +  +     Y  +I+ L KA +L+ +
Sbjct: 259 PTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVF---TYTELIRGLGKAGRLDEA 315

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC------------- 301
           Y  F ++    C+ DT   N ++      G    A +++E ME   C             
Sbjct: 316 YNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKA 375

Query: 302 ----------------SLDGS-------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
                            + GS       TY ++I    K+ R + A+ L +EM E+ F P
Sbjct: 376 LFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPP 435

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
               + SL+D++GKA R D + +++ E+ + CG   SA +Y  +I+   KAG+LD A+ L
Sbjct: 436 CPAAYCSLIDALGKAKRYDLANELFQELKENCGS-SSARVYAVMIKHLGKAGRLDDAVDL 494

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +DEM   G  PN   +  ++   A++G LD A++    M+  G +P  ++Y+ +L   A 
Sbjct: 495 FDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAK 554

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           +G  D AM +  +M  + ++P   +Y  +L  L+   + + AAK++ EM  +G+  D+  
Sbjct: 555 TGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLIT 614

Query: 518 SDVLMVYIKDGSVDH 532
              ++  I  G VD 
Sbjct: 615 YSSILEAI--GKVDQ 627


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 191/398 (47%), Gaps = 45/398 (11%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           SAYN +I    KA   + +   ++ +  S  + DT ++NVLM  F         ++++E 
Sbjct: 90  SAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEE 149

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M+   CS +  TY ++I ++ K G ++ A+K+F +MK R  RP+   + S++D +GK+G 
Sbjct: 150 MQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGH 209

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN------ 409
           +D +  ++ EM   G   +  +Y SLI    ++G+ D A +L+ EM   G +P+      
Sbjct: 210 VDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTS 269

Query: 410 -----------------------------FGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
                                          L+ ++I++  KS +LD A  IF ++E  G
Sbjct: 270 LVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDG 329

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
            +P   T++ L++    SG++  A  L   M  AG  P ++ Y  L+  L K   V+ A 
Sbjct: 330 LVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAG 389

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR---TNNFIVRQLF 556
           ++LLEM+++GY  DV   + L+    K G ++ ALR    + + G     T N I+  L 
Sbjct: 390 QLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFANTVTYNTILNGL- 448

Query: 557 ESCMKNALYESAK---PLLETYVESAAKVDLVLYTSVL 591
             CM   + E+ K    + +  V+     D V YT++L
Sbjct: 449 --CMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLL 484



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 191/414 (46%), Gaps = 12/414 (2%)

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
            F+W + Q   VP       L ++L  +R F+    +  E+         S +    R+ 
Sbjct: 5   FFKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEK-------SRYILQPRIF 57

Query: 243 QYLAK----ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
             LA+    A  LE S    K++    C +   +YN L+  F+  G   KA  +Y  M +
Sbjct: 58  IELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQ 117

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  T+ +++ +  K+ R+D+  KLF+EM+ +N  P+   ++ L+D++ K G ++ 
Sbjct: 118 SGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEK 177

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++KV+++M+  G RP+   Y S+I+   K+G +D A  L++EM   G      ++  +I 
Sbjct: 178 ALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIH 237

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
              +SG+ D A  +F +M   G  P   T++ L+     +G+   A +++      G   
Sbjct: 238 GLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCAL 297

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
            ++ Y  L+  L K K +D A +I  E++  G   DV   + LM  + K G +  A   L
Sbjct: 298 DVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILL 357

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             M  +G   +  +   L +   K+   E A  LL        + D+V Y +++
Sbjct: 358 GDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLI 411


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 210/451 (46%), Gaps = 14/451 (3%)

Query: 151 LETQLDKLQFVPKMVH-----ITQALKVINDSDTSLSLFRWAKRQSWY--VPGDECYVML 203
            ET  D L F    V      I + L     ++ +L +F + + +  +  +  +    ++
Sbjct: 132 FETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNREDFASILSNSVVAVI 191

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVL 262
             VL +    +G  S    ++HD   +G+ +   AY  +I   A   +   +   FKK+ 
Sbjct: 192 ISVLGK----EGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLE 247

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           +  C+    +YNV++ ++   G+P+ K   + +SM+    + D  TY  +I S  +    
Sbjct: 248 EEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLY 307

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           + A ++F+EMK   F P    + +L+D  GK+ R   +M+V  EM+  G  PS   Y SL
Sbjct: 308 EEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSL 367

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I +YA+ G LD A+ L  +M   G +P+   +T ++    K+GK D AM +F +M  AG 
Sbjct: 368 ISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGC 427

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   T++ L++MH + G     MK++  +      P + T+  LL +  +  +    + 
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSG 487

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +  EMK  G+  +    + L+  Y + G  D A+   R M  +G+  +      +  +  
Sbjct: 488 VFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +  L+E ++ +L    +   K + + Y S+L
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLL 578



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 166/391 (42%), Gaps = 36/391 (9%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++    K+ +   +    K++  S       +YN L++ +   GL  +A E+   M
Sbjct: 328 TYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQM 387

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     D  TY  ++    K+G+ D A+K+F+EM+    +P+   F +L+   G  G  
Sbjct: 388 VKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNF 447

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
              MKV+ E++ C   P    + +L+  + + G       ++ EM+ AGF P    F  +
Sbjct: 448 VEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTL 507

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++++ G  D AM+I+  M  AG  P  STY+ +L   A  G  + + K+   M     
Sbjct: 508 ISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRC 567

Query: 477 RPGLSTYTALL--------------------------------TLL---AKRKLVDVAAK 501
           +P   TY +LL                                TL+   +K  L+    +
Sbjct: 568 KPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETER 627

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
             LE++  G+S D++  + ++ +Y +   V      L F+  SG   +      L     
Sbjct: 628 AFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYS 687

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +   +E ++ +L   +    K D++ + +V+
Sbjct: 688 RTEHFEKSEDILREIIAKGMKPDIISFNTVI 718



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/393 (19%), Positives = 180/393 (45%), Gaps = 4/393 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L     ++   D  + +F+EM     +  I  F+A   +  +  + + +EM    F+
Sbjct: 399 YTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNAL--IKMHGNRGNFVEM-MKVFE 455

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++   +C  D  ++N L+ +F   G+  +   +++ M++     +  T+  +I + ++ G
Sbjct: 456 EIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 515

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+ +++ M +    P  + + +++ ++ + G  + S KV  EM+    +P+   Y 
Sbjct: 516 FFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYC 575

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SL+ +YA   +++    L +E+      P   L   ++  ++KS  L      F ++   
Sbjct: 576 SLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQ 635

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           GF P  +T + ++ ++     V    ++ N +  +G  P L+TY +L+ + ++ +  + +
Sbjct: 636 GFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKS 695

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             IL E+   G   D +S + V+  Y ++G +  A R    M   G+  +         S
Sbjct: 696 EDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIAS 755

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              ++++  A  +++  +++  K +   Y S++
Sbjct: 756 YASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLI 788



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 156/357 (43%), Gaps = 9/357 (2%)

Query: 161 VPKMVHITQALKVI--NDSDTSLS-LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGML 217
           VP +V     L V   N  D+ +S +F+  KR + +VP  + +  L    +    FD  +
Sbjct: 463 VPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERDTFNTLISAYSRCGFFDQAM 521

Query: 218 SLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +++  M+      G++   S YN V+  LA+    E S     ++ D  CK +  +Y  L
Sbjct: 522 AIYRRML----DAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSL 577

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  + N     +   + E +  G         + ++   +KS  L    + F E++E+ F
Sbjct: 578 LHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGF 637

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P      ++V   G+   +  + ++   ++  G  PS   Y SL+  Y++    + +  
Sbjct: 638 SPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSED 697

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +  E+   G +P+   F  +I ++ ++G++  A  IF +M+  G  P   TY+  +  +A
Sbjct: 698 ILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYA 757

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
           S      A+ +   M   G +P  +TY +L+    K    D A+  +  ++ +  SV
Sbjct: 758 SDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSV 814


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 210/451 (46%), Gaps = 14/451 (3%)

Query: 151 LETQLDKLQFVPKMVH-----ITQALKVINDSDTSLSLFRWAKRQSWY--VPGDECYVML 203
            ET  D L F    V      I + L     ++ +L +F + + +  +  +  +    ++
Sbjct: 132 FETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNREDFASILSNSVVAVI 191

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVL 262
             VL +    +G  S    ++HD   +G+ +   AY  +I   A   +   +   FKK+ 
Sbjct: 192 ISVLGK----EGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLE 247

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           +  C+    +YNV++ ++   G+P+ K   + +SM+    + D  TY  +I S  +    
Sbjct: 248 EEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLY 307

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           + A ++F+EMK   F P    + +L+D  GK+ R   +M+V  EM+  G  PS   Y SL
Sbjct: 308 EEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSL 367

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I +YA+ G LD A+ L  +M   G +P+   +T ++    K+GK D AM +F +M  AG 
Sbjct: 368 ISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGC 427

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   T++ L++MH + G     MK++  +      P + T+  LL +  +  +    + 
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSG 487

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +  EMK  G+  +    + L+  Y + G  D A+   R M  +G+  +      +  +  
Sbjct: 488 VFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +  L+E ++ +L    +   K + + Y S+L
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLL 578



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 166/391 (42%), Gaps = 36/391 (9%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++    K+ +   +    K++  S       +YN L++ +   GL  +A E+   M
Sbjct: 328 TYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQM 387

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     D  TY  ++    K+G+ D A+K+F+EM+    +P+   F +L+   G  G  
Sbjct: 388 VKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNF 447

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
              MKV+ E++ C   P    + +L+  + + G       ++ EM+ AGF P    F  +
Sbjct: 448 VEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTL 507

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++++ G  D AM+I+  M  AG  P  STY+ +L   A  G  + + K+   M     
Sbjct: 508 ISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRC 567

Query: 477 RPGLSTYTALL--------------------------------TLL---AKRKLVDVAAK 501
           +P   TY +LL                                TL+   +K  L+    +
Sbjct: 568 KPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETER 627

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
             LE++  G+S D++  + ++ +Y +   V      L F+  SG   +      L     
Sbjct: 628 AFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYS 687

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +   +E ++ +L   +    K D++ + +V+
Sbjct: 688 RTEHFEKSEDILREIIAKGMKPDIISFNTVI 718



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 185/406 (45%), Gaps = 6/406 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L     ++   D  + +F+EM     +  I  F+A   +  +  + + +EM    F+
Sbjct: 399 YTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNAL--IKMHGNRGNFVEM-MKVFE 455

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++   +C  D  ++N L+ +F   G+  +   +++ M++     +  T+  +I + ++ G
Sbjct: 456 EIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 515

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+ +++ M +    P  + + +++ ++ + G  + S KV  EM+    +P+   Y 
Sbjct: 516 FFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYC 575

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SL+ +YA   +++    L +E+      P   L   ++  ++KS  L      F ++   
Sbjct: 576 SLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQ 635

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           GF P  +T + ++ ++     V    ++ N +  +G  P L+TY +L+ + ++ +  + +
Sbjct: 636 GFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKS 695

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             IL E+   G   D +S + V+  Y ++G +  A R    M   G+  +         S
Sbjct: 696 EDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIAS 755

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC--QDEQN 602
              ++++  A  +++  +++  K +   Y S++    +   +DE N
Sbjct: 756 YASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEAN 801



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 154/357 (43%), Gaps = 9/357 (2%)

Query: 161 VPKMVHITQALKVI--NDSDTSLS-LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGML 217
           VP +V     L V   N  D+ +S +F+  KR + +VP  + +  L    +    FD  +
Sbjct: 463 VPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERDTFNTLISAYSRCGFFDQAM 521

Query: 218 SLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +++  M+      G++   S YN V+  LA+    E S     ++ D  CK +  +Y  L
Sbjct: 522 AIYRRML----DAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSL 577

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  + N     +   + E +  G         + ++   +KS  L    + F E++E+ F
Sbjct: 578 LHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGF 637

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P      ++V   G+   +  + ++   ++  G  PS   Y SL+  Y++    + +  
Sbjct: 638 SPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSED 697

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +  E+   G +P+   F  +I ++ ++G++  A  IF +M+  G  P   TY+  +  +A
Sbjct: 698 ILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYA 757

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
           S      A+ +   M     +P  +TY +L+    K    D A   +  ++ +  SV
Sbjct: 758 SDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLRNLDPSV 814


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 176/358 (49%), Gaps = 4/358 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-AFEIYES 295
           AY  ++   ++A +   +   F++++DS  +    +YNV++ ++    +P+K   E+  S
Sbjct: 174 AYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVAS 233

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M++   + D  TY  +I    +      A ++F EMK   F P    F SL+D  GKA R
Sbjct: 234 MKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARR 293

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            D +++V  EM+  G  PS   Y SLI SY K G L+ A+ L  EM + G +P+   +T 
Sbjct: 294 HDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTT 353

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I    ++GK+D A+  + +M R G  P   TY+ L++MH   G+    M +++ + SAG
Sbjct: 354 LISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAG 413

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY--SVDVSASDVLMVYIKDGSVDHA 533
             P + T+  LL +  +  L    + +  EMK  GY    D   S ++  Y + G  D A
Sbjct: 414 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS-LISSYSRCGLFDLA 472

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           ++  + M  +GI  +      +  +  +   +E A+ L     E   K D   Y+S+L
Sbjct: 473 MQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLL 530



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 167/338 (49%), Gaps = 2/338 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    +    + +   F ++  S  + D  ++N L+ ++       +A E+ + ME
Sbjct: 246 YNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEME 305

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C     TY  +I S  K G L+ A+ L QEM+ +  +P    + +L+  + +AG++D
Sbjct: 306 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKID 365

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++  Y EM   G +P+   Y +LI+ +   GK    + ++DE+R AGF P+   +  ++
Sbjct: 366 AAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLL 425

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               ++G       +F +M++AG++P   TY  L+  ++  G  D AM++Y  M  AG+ 
Sbjct: 426 AVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIY 485

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P +STY A+L+ LA+    + A K+  EM+      D  S S +L  Y     +D     
Sbjct: 486 PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKAL 545

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMK-NALYESAKPLLE 573
              + S  I  +N++V+ L     K N L E+ K  LE
Sbjct: 546 SDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE 583



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 175/405 (43%), Gaps = 6/405 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           + S + P    +  L DV  ++R  D  + +  EM        +     YN +I    K 
Sbjct: 270 KASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVV---TYNSLISSYVKD 326

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             LE +    +++     K D  +Y  L++     G    A   Y+ M +  C  +  TY
Sbjct: 327 GLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 386

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK-VYMEMQ 367
             +I      G+    + +F E++   F P    + +L+   G+ G LD+ +  V+ EM+
Sbjct: 387 NALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNG-LDSEVSGVFKEMK 445

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G+ P    YVSLI SY++ G  D A++++  M  AG  P+   +  ++ + A+ G+ +
Sbjct: 446 KAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWE 505

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A  +F +ME     P   +YS LL  +A++ ++D    L + + S  + P       L+
Sbjct: 506 QAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 565

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR 546
            + +K   +  A K  LE++    S+D++  + ++ +Y K+  V    + L  M  S I 
Sbjct: 566 LVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAIN 625

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +      L     +    E  + +L     S  + D   Y +V+
Sbjct: 626 LSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVI 670



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 175/406 (43%), Gaps = 39/406 (9%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L+ +   D  +  +DEMV +  K  +     YN +I+      K       F 
Sbjct: 351 YTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLC---TYNALIKMHGVRGKFPEMMAVFD 407

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++  +    D  ++N L+ +F   GL  +   +++ M+K     +  TY  +I S ++ G
Sbjct: 408 ELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 467

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+++++ M E    P  + + +++ ++ + GR + + K++ EM+    +P    Y 
Sbjct: 468 LFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 527

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRP-NFGLFTMII----------------ESHAK 422
           SL+ +YA A +LD    L D++      P N+ + T+++                E   K
Sbjct: 528 SLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQK 587

Query: 423 SGKLDIAM------------------SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
              LDI +                   I + M+ +    + +TY+ L+ M++  G  +  
Sbjct: 588 RCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKC 647

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
             +   + S+G+RP   +Y  ++    ++  +  A+++  EMK  G   DV   ++ +  
Sbjct: 648 ENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 707

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
           Y+ +   + A+  +R+M + G + N      + E   +N     AK
Sbjct: 708 YVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAK 753



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 177/393 (45%), Gaps = 14/393 (3%)

Query: 118 DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQ---FVPKMVHITQALKVI 174
           D ++  G K      +A+ K+  V  ++   PE+    D+L+   FVP +V     L V 
Sbjct: 372 DEMVRNGCKPNLCTYNALIKMHGVRGKF---PEMMAVFDELRSAGFVPDIVTWNTLLAVF 428

Query: 175 --NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI 232
             N  D+ +S      +++ Y+P  + YV L    +    FD  + ++  M+       +
Sbjct: 429 GQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDV 488

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           S    YN V+  LA+  + E +   F ++ + DCK D  SY+ L+  + N     K   +
Sbjct: 489 S---TYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKAL 545

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            + +            + ++   +K   L  A K F E++++      N+  ++V   GK
Sbjct: 546 SDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGK 605

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
              +    K+   M+      SA  Y SL+  Y++ G  +    +  E++ +G RP+   
Sbjct: 606 NRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYS 665

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  +I ++ + G++  A  +F++M+ +G  P   TY+  ++ + S+   + A++L   M 
Sbjct: 666 YNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 725

Query: 473 SAGLRPGLSTYTALLTLLAKR-KLVDVAAKILL 504
           + G +P   TY +++    +  KL D  AKI +
Sbjct: 726 TQGCKPNERTYNSIVEGYCRNGKLTD--AKIFV 756


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/574 (21%), Positives = 234/574 (40%), Gaps = 114/574 (19%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + ++  +KWGP+ E  L+ L        + + +K     +  +  FRWA ++  Y   
Sbjct: 63  RFIRILKIFKWGPDAEKALEVLMLRVDHWLVREVMKTDIGVNVKMQFFRWAAKRRNYEHD 122

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS--AYNRVIQYLAKADKLEMS 254
              Y+ L   L     +  M  +  EMV    +N I + +    + V++ L  A  +  +
Sbjct: 123 TSTYMALIRCLEVVEQYGEMWKMIQEMV----RNPICVVTPTELSEVVRMLGNAKMVSKA 178

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-KGECSLDGSTYELMIP 313
              F ++    C+   Q+YN ++ + +++G   K  E+Y  M  +G C  D  TY  +I 
Sbjct: 179 IAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALIS 238

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFA----------------------------- 344
           +  K GR D+A +L  EMKE   +P+  I+                              
Sbjct: 239 AFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRP 298

Query: 345 ------SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
                  L+  +GKAGR+D +   + EMQ  G RP   +  ++I    KAG+LD A++L+
Sbjct: 299 DVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLF 358

Query: 399 DEM------------------------------------RIAGFRPNFGLFTMIIESHAK 422
            EM                                    + +G  P+   ++++I+   K
Sbjct: 359 QEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCK 418

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM---------------------------- 454
           + +++ AM +  +M+  GF P P+ Y  L++                             
Sbjct: 419 TNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARV 478

Query: 455 ------H-ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
                 H   +G++D A+ +++ M   G  P +  Y AL++ LA+  ++D A   +  M+
Sbjct: 479 YAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQ 538

Query: 508 TMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G   D+++ ++++  + K G    A+  L  M  S +R +      +  +     ++E
Sbjct: 539 EHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFE 598

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDE 600
            A  L+E       + DL+ Y+S+L  + +   E
Sbjct: 599 EAAKLMEEMNTLGFEYDLITYSSILEAIGKVDHE 632


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 126/537 (23%), Positives = 222/537 (41%), Gaps = 87/537 (16%)

Query: 137  KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
            + + ++  +KWGP+ E  L+ L        + + +K     +  +  FRWA ++  Y   
Sbjct: 1053 RFIRILKIFKWGPDAEKALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKRRNYEHD 1112

Query: 197  DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA--YNRVIQYLAKADKLEMS 254
               Y+ L   L     +  M  +  EMV    +N I + +    + V++ L  A  +  +
Sbjct: 1113 TSTYMALIHCLEVVEQYGEMWKMIQEMV----RNPICVVTPTELSDVVRMLGNAKMVRQA 1168

Query: 255  YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-KGECSLDGSTYELMIP 313
               F ++    C+   Q+YN ++ + +++G   K  ++Y  M  +G C  D  TY  +I 
Sbjct: 1169 ITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALIS 1228

Query: 314  SLAKSGRLDAAIKLFQEMKERNFRPSFNI------------------------------- 342
            +  K GR D+AI+L  EMKE   +P+  I                               
Sbjct: 1229 AFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRP 1288

Query: 343  ----FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
                +  L+  +GKAGR+D +   + EMQ  G RP      ++I    KAG+LD A++L+
Sbjct: 1289 DVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLF 1348

Query: 399  DEMRI------------------------------------AGFRPNFGLFTMIIESHAK 422
             EM                                      +G  P+   ++++I+   K
Sbjct: 1349 QEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCK 1408

Query: 423  SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            + +++ AM +  +M+  GF P P+ Y  L++    + + D A +L+  +           
Sbjct: 1409 TNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARV 1468

Query: 483  YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMG 541
            Y  ++  L K   +D A  +  EM  +G + DV A + LM  + + G +D AL  +R M 
Sbjct: 1469 YAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQ 1528

Query: 542  SSG----IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
              G    I + N I+  L     K      A  +L    +S  + D+V Y +VL  L
Sbjct: 1529 EHGCIPDINSYNIILNGL----AKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGAL 1581



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 185/360 (51%), Gaps = 9/360 (2%)

Query: 175  NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
            ND+  +LSLF   + Q +  P    Y  L   L ++   D     F EM  +  +     
Sbjct: 1269 NDAHGALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVF 1327

Query: 235  FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEIY 293
                N +I +L KA +L+ +   F+++    C     +YN ++  LF +K    +    +
Sbjct: 1328 M---NNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWF 1384

Query: 294  ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            E M++   S    TY ++I    K+ R++ A+ L +EM E+ F P    + SL+D++GKA
Sbjct: 1385 ERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 1444

Query: 354  GRLDTSMKVYMEM-QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
             R D + +++ E+ + CG   SA +Y  +I+   KAG+LD A+ ++DEM   G  P+   
Sbjct: 1445 KRYDLACELFQELKENCGSS-SARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYA 1503

Query: 413  FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
            +  ++   A++G LD A+S    M+  G +P  ++Y+ +L   A +G    AM++ ++M 
Sbjct: 1504 YNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMK 1563

Query: 473  SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDH 532
             + +RP + +Y  +L  L+   + + A+K++ EM T+G+  D+     ++  I  G VDH
Sbjct: 1564 QSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAI--GKVDH 1621


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 175/358 (48%), Gaps = 4/358 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-AFEIYES 295
           AY  ++   ++A +   +   F++++DS  +    +YNV++ ++    +P+K   E+  S
Sbjct: 156 AYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVAS 215

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M++   + D  TY  +I    +      A ++F EMK   F P    F SL+D  GKA R
Sbjct: 216 MKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARR 275

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            D +++V  EM+  G  PS   Y SLI SY K G L+ A+ L  EM + G +P+   +T 
Sbjct: 276 HDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTT 335

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I    ++GK+D A+  + +M R G  P   TY+ L++MH   G+    M +++   SAG
Sbjct: 336 LISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAG 395

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY--SVDVSASDVLMVYIKDGSVDHA 533
             P + T+  LL +  +  L    + +  EMK  GY    D   S ++  Y + G  D A
Sbjct: 396 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS-LISSYSRCGLFDLA 454

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           ++  + M  +GI  +      +  +  +   +E A+ L     E   K D   Y+S+L
Sbjct: 455 MQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLL 512



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 166/338 (49%), Gaps = 2/338 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    +    + +   F ++  S  + D  ++N L+ ++       +A E+ + ME
Sbjct: 228 YNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEME 287

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C     TY  +I S  K G L+ A+ L QEM+ +  +P    + +L+  + +AG++D
Sbjct: 288 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKID 347

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++  Y EM   G +P+   Y +LI+ +   GK    + ++DE R AGF P+   +  ++
Sbjct: 348 AAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLL 407

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               ++G       +F +M++AG++P   TY  L+  ++  G  D AM++Y  M  AG+ 
Sbjct: 408 AVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIY 467

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P +STY A+L+ LA+    + A K+  EM+      D  S S +L  Y     +D     
Sbjct: 468 PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKAL 527

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMK-NALYESAKPLLE 573
              + S  I  +N++V+ L     K N L E+ K  LE
Sbjct: 528 SDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE 565



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 174/405 (42%), Gaps = 6/405 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           + S + P    +  L DV  ++R  D  + +  EM        +     YN +I    K 
Sbjct: 252 KASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVV---TYNSLISSYVKD 308

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             LE +    +++     K D  +Y  L++     G    A   Y+ M +  C  +  TY
Sbjct: 309 GLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 368

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK-VYMEMQ 367
             +I      G+    + +F E +   F P    + +L+   G+ G LD+ +  V+ EM+
Sbjct: 369 NALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNG-LDSEVSGVFKEMK 427

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G+ P    YVSLI SY++ G  D A++++  M  AG  P+   +  ++ + A+ G+ +
Sbjct: 428 KAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWE 487

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A  +F +ME     P   +YS LL  +A++ ++D    L + + S  + P       L+
Sbjct: 488 QAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 547

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR 546
            + +K   +  A K  LE++    S+D++  + ++ +Y K+  V    + L  M  S I 
Sbjct: 548 LVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAIN 607

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +      L     +    E  + +L     S  + D   Y +V+
Sbjct: 608 LSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVI 652



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/406 (20%), Positives = 171/406 (42%), Gaps = 39/406 (9%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L+ +   D  +  +DEMV +  K  +     YN +I+      K       F 
Sbjct: 333 YTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLC---TYNALIKMHGVRGKFPEMMAVFD 389

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +   +    D  ++N L+ +F   GL  +   +++ M+K     +  TY  +I S ++ G
Sbjct: 390 EFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 449

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+++++ M E    P  + + +++ ++ + GR + + K++ EM+    +P    Y 
Sbjct: 450 LFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 509

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII-----------------ESHAK 422
           SL+ +YA A +LD    L D++      P+  L   ++                 E   K
Sbjct: 510 SLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQK 569

Query: 423 SGKLDIAM------------------SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
              LDI +                   I + M+ +    + +TY+ L+ M++  G  +  
Sbjct: 570 RCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKC 629

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
             +   + S+G+RP   +Y  ++    ++  +  A+++  EMK  G   DV   ++ +  
Sbjct: 630 ENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 689

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
           Y+ +   + A+  +R+M + G + N      + E   +N     AK
Sbjct: 690 YVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAK 735



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 176/393 (44%), Gaps = 14/393 (3%)

Query: 118 DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQ---FVPKMVHITQALKVI 174
           D ++  G K      +A+ K+  V  ++   PE+    D+ +   FVP +V     L V 
Sbjct: 354 DEMVRNGCKPNLCTYNALIKMHGVRGKF---PEMMAVFDEFRSAGFVPDIVTWNTLLAVF 410

Query: 175 --NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI 232
             N  D+ +S      +++ Y+P  + YV L    +    FD  + ++  M+       +
Sbjct: 411 GQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDV 470

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           S    YN V+  LA+  + E +   F ++ + DCK D  SY+ L+  + N     K   +
Sbjct: 471 S---TYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKAL 527

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            + +            + ++   +K   L  A K F E++++      N+  ++V   GK
Sbjct: 528 SDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGK 587

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
              +    K+   M+      SA  Y SL+  Y++ G  +    +  E++ +G RP+   
Sbjct: 588 NRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYS 647

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  +I ++ + G++  A  +F++M+ +G  P   TY+  ++ + S+   + A++L   M 
Sbjct: 648 YNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 707

Query: 473 SAGLRPGLSTYTALLTLLAKR-KLVDVAAKILL 504
           + G +P   TY +++    +  KL D  AKI +
Sbjct: 708 TQGCKPNERTYNSIVEGYCRNGKLTD--AKIFV 738


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 125/504 (24%), Positives = 222/504 (44%), Gaps = 53/504 (10%)

Query: 137 KIVEVVNRWKWGPELETQLD--KLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           + + ++  +KWGP+ E  L+  KL+  P++V   + LK+  +    +  F+WA ++  + 
Sbjct: 58  RFIRILKIFKWGPDAEKALEVLKLKVDPRLVR--EILKIDVEVSVKIQFFKWAGKRRNFE 115

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
                Y+ L   L+E R F  +     +MV  S     +  S    +++ L KA  +  +
Sbjct: 116 HDSTTYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELS---EIVRILGKAKMVNRA 172

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIP 313
              F +V    C+    +YN ++ + + +G   K  E+Y  M  +  C  D  TY  +I 
Sbjct: 173 LSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALIS 232

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS---------------------------- 345
           + AK  R D+AI+LF EMKE   +P+  I+ +                            
Sbjct: 233 AFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLL 292

Query: 346 -------LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
                  L+  +GK+GR++ +   Y  M   G +P   +  +LI    ++  L  A++L+
Sbjct: 293 TVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLF 352

Query: 399 DEMRIAGFRPNFGLFTMIIES--HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           DEM++    PN   +  II+S   AK+  L  A S F  M++ G +P+  TYS L++ + 
Sbjct: 353 DEMKLLNCAPNVVTYNTIIKSLFEAKA-PLSEASSWFERMKKDGIVPSSFTYSILIDGYC 411

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            + +V+ A+ L   M   G  P  + Y +L+  L   K  DVA ++  E+K    +   S
Sbjct: 412 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKE---NCGCS 468

Query: 517 ASDVLMVYIKD----GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           ++ V  V IK     G ++ A+     M   G   + +    L    ++    + A  L 
Sbjct: 469 SARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLF 528

Query: 573 ETYVESAAKVDLVLYTSVLAHLVR 596
            T  E+    D+  +  +L  L R
Sbjct: 529 RTMEENGCTPDINSHNIILNGLAR 552



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 170/325 (52%), Gaps = 7/325 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L +S   +     +  M+ D  K  + L    N +I  L +++ L  +   F 
Sbjct: 297 YTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLM---NNLINILGRSNHLRDAIKLFD 353

Query: 260 KVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           ++   +C  +  +YN ++ +LF  K    +A   +E M+K        TY ++I    K+
Sbjct: 354 EMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKT 413

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPM 377
            R++ A+ L +EM E+ F P    + SL++++G A R D + +++ E+ + CG   SA +
Sbjct: 414 NRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGC-SSARV 472

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  +I+ + K G+L+ A+ L++EM+  G  P+   +  ++    ++ ++D A S+F  ME
Sbjct: 473 YAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTME 532

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P  ++++ +L   A +G    A++++  M ++ ++P + ++  +L  L++  L +
Sbjct: 533 ENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFE 592

Query: 498 VAAKILLEMKTMGYSVD-VSASDVL 521
            AAK++ EM + G+  D ++ S +L
Sbjct: 593 EAAKLMQEMSSKGFQYDLITYSSIL 617



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 143/292 (48%), Gaps = 6/292 (2%)

Query: 203 LFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADK-LEMSYCCFKK 260
           L ++L  S      + LFDEM + + + N ++    YN +I+ L +A   L  +   F++
Sbjct: 335 LINILGRSNHLRDAIKLFDEMKLLNCAPNVVT----YNTIIKSLFEAKAPLSEASSWFER 390

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +        + +Y++L+  +       KA  + E M++       + Y  +I +L  + R
Sbjct: 391 MKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKR 450

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
            D A +LFQE+KE     S  ++A ++   GK GRL+ ++ ++ EM+  G  P    Y +
Sbjct: 451 YDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNA 510

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L+    +A ++D A  L+  M   G  P+     +I+   A++G    A+ +FT M+ + 
Sbjct: 511 LMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNST 570

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
             P   +++ +L   + +G  + A KL   M+S G +  L TY+++L  + K
Sbjct: 571 IKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDLITYSSILEAVGK 622


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 175/358 (48%), Gaps = 4/358 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-AFEIYES 295
           AY  ++   ++A +   +   F++++DS  +    +YNV++ ++    +P+K   E+  S
Sbjct: 174 AYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVAS 233

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M++   + D  TY  +I    +      A ++F EMK   F P    F SL+D  GKA R
Sbjct: 234 MKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARR 293

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            D +++V  EM+  G  PS   Y SLI SY K G L+ A+ L  EM + G +P+   +T 
Sbjct: 294 HDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTT 353

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I    ++GK+D A+  + +M R G  P   TY+ L++MH   G+    M +++   SAG
Sbjct: 354 LISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAG 413

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY--SVDVSASDVLMVYIKDGSVDHA 533
             P + T+  LL +  +  L    + +  EMK  GY    D   S ++  Y + G  D A
Sbjct: 414 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS-LISSYSRCGLFDLA 472

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           ++  + M  +GI  +      +  +  +   +E A+ L     E   K D   Y+S+L
Sbjct: 473 MQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLL 530



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 166/338 (49%), Gaps = 2/338 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    +    + +   F ++  S  + D  ++N L+ ++       +A E+ + ME
Sbjct: 246 YNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEME 305

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C     TY  +I S  K G L+ A+ L QEM+ +  +P    + +L+  + +AG++D
Sbjct: 306 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKID 365

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++  Y EM   G +P+   Y +LI+ +   GK    + ++DE R AGF P+   +  ++
Sbjct: 366 AAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLL 425

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               ++G       +F +M++AG++P   TY  L+  ++  G  D AM++Y  M  AG+ 
Sbjct: 426 AVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIY 485

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P +STY A+L+ LA+    + A K+  EM+      D  S S +L  Y     +D     
Sbjct: 486 PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKAL 545

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMK-NALYESAKPLLE 573
              + S  I  +N++V+ L     K N L E+ K  LE
Sbjct: 546 SDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE 583



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 174/405 (42%), Gaps = 6/405 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           + S + P    +  L DV  ++R  D  + +  EM        +     YN +I    K 
Sbjct: 270 KASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVV---TYNSLISSYVKD 326

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             LE +    +++     K D  +Y  L++     G    A   Y+ M +  C  +  TY
Sbjct: 327 GLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 386

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK-VYMEMQ 367
             +I      G+    + +F E +   F P    + +L+   G+ G LD+ +  V+ EM+
Sbjct: 387 NALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNG-LDSEVSGVFKEMK 445

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G+ P    YVSLI SY++ G  D A++++  M  AG  P+   +  ++ + A+ G+ +
Sbjct: 446 KAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWE 505

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A  +F +ME     P   +YS LL  +A++ ++D    L + + S  + P       L+
Sbjct: 506 QAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 565

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR 546
            + +K   +  A K  LE++    S+D++  + ++ +Y K+  V    + L  M  S I 
Sbjct: 566 LVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAIN 625

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +      L     +    E  + +L     S  + D   Y +V+
Sbjct: 626 LSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVI 670



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 174/406 (42%), Gaps = 39/406 (9%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L+ +   D  +  +DEMV +  K  +     YN +I+      K       F 
Sbjct: 351 YTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLC---TYNALIKMHGVRGKFPEMMAVFD 407

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +   +    D  ++N L+ +F   GL  +   +++ M+K     +  TY  +I S ++ G
Sbjct: 408 EFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 467

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+++++ M E    P  + + +++ ++ + GR + + K++ EM+    +P    Y 
Sbjct: 468 LFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 527

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRP-NFGLFTMII----------------ESHAK 422
           SL+ +YA A +LD    L D++      P N+ + T+++                E   K
Sbjct: 528 SLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQK 587

Query: 423 SGKLDIAM------------------SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
              LDI +                   I + M+ +    + +TY+ L+ M++  G  +  
Sbjct: 588 RCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKC 647

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
             +   + S+G+RP   +Y  ++    ++  +  A+++  EMK  G   DV   ++ +  
Sbjct: 648 ENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 707

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
           Y+ +   + A+  +R+M + G + N      + E   +N     AK
Sbjct: 708 YVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAK 753



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 176/393 (44%), Gaps = 14/393 (3%)

Query: 118 DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQ---FVPKMVHITQALKVI 174
           D ++  G K      +A+ K+  V  ++   PE+    D+ +   FVP +V     L V 
Sbjct: 372 DEMVRNGCKPNLCTYNALIKMHGVRGKF---PEMMAVFDEFRSAGFVPDIVTWNTLLAVF 428

Query: 175 --NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI 232
             N  D+ +S      +++ Y+P  + YV L    +    FD  + ++  M+       +
Sbjct: 429 GQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDV 488

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           S    YN V+  LA+  + E +   F ++ + DCK D  SY+ L+  + N     K   +
Sbjct: 489 S---TYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKAL 545

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            + +            + ++   +K   L  A K F E++++      N+  ++V   GK
Sbjct: 546 SDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGK 605

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
              +    K+   M+      SA  Y SL+  Y++ G  +    +  E++ +G RP+   
Sbjct: 606 NRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYS 665

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  +I ++ + G++  A  +F++M+ +G  P   TY+  ++ + S+   + A++L   M 
Sbjct: 666 YNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 725

Query: 473 SAGLRPGLSTYTALLTLLAKR-KLVDVAAKILL 504
           + G +P   TY +++    +  KL D  AKI +
Sbjct: 726 TQGCKPNERTYNSIVEGYCRNGKLTD--AKIFV 756


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 143/592 (24%), Positives = 259/592 (43%), Gaps = 34/592 (5%)

Query: 125 IKKPFLNASAVAK---------IVEVVNRWKWG-PELETQLDKLQFVPKMV-HITQALKV 173
           I+ PF+  S  +          I +VV+   W  P LE   D L   P  V  +   LK 
Sbjct: 62  IRYPFVTKSGTSTYSEDFDRDWIRKVVHNDLWDDPGLEKLFD-LTLAPIWVPRVLVELK- 119

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD------- 226
             D   +   F+W+  ++ +    E Y ++  +L  +R +    S+  EMV         
Sbjct: 120 -EDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVF 178

Query: 227 ----SSKN-GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
               S++N  +  F  ++ +   L     LE +  CF K+        T+S N L+  F 
Sbjct: 179 DVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFA 238

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
             G        ++ M          TY +MI  + K G ++AA  LF+EMK R   P   
Sbjct: 239 KLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTV 298

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            + S++D  GK GRLD ++  + EM+     P    Y +LI  + K GKL   L  + EM
Sbjct: 299 TYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREM 358

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
           +  G +PN   ++ ++++  K G +  A+  + DM R G +P   TY+ L++ +   G +
Sbjct: 359 KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNL 418

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
             A +L N M   G+   + TYTAL+  L   + +  A ++  +M T G   ++++ + L
Sbjct: 419 SDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNAL 478

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  ++K  ++D AL  L  +   GI+ +  +              E+AK ++    E   
Sbjct: 479 IHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGI 538

Query: 581 KVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF-LCGLFTGPEQRKQPVLSFV 639
           K + ++YT+++    +  +     HL+  +     +      C L  G  + K  ++S  
Sbjct: 539 KANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNK--LVSKA 596

Query: 640 REFFHGI--DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFP 689
            ++F+ I  D+ L+  AA +    +++ L    Q+  A  +++   +  L P
Sbjct: 597 VDYFNRISNDFGLQANAAIF--TAMIDGLCKDNQVEAATTLFEQMVQKGLVP 646



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 174/445 (39%), Gaps = 40/445 (8%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D + +  D +    LF+EM     +  +     YN +I    K  +L+ + C F+
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEM---KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFE 321

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++ D  C+ D  +YN L+  F   G      E Y  M+      +  +Y  ++ +  K G
Sbjct: 322 EMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEG 381

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV----------------- 362
            +  AIK + +M+     P+   + SL+D+  K G L  + ++                 
Sbjct: 382 MMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYT 441

Query: 363 ------------------YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
                             + +M   G  P+   Y +LI  + KA  +D AL L +E++  
Sbjct: 442 ALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGR 501

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G +P+  L+   I       K++ A  +  +M+  G       Y+ L++ +  SG     
Sbjct: 502 GIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEG 561

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT-MGYSVDVSASDVLMV 523
           + L + M    +   + T+  L+  L K KLV  A      +    G   + +    ++ 
Sbjct: 562 LHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMID 621

Query: 524 YI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            + KD  V+ A      M   G+  +      L +   K      A  L +   E   K+
Sbjct: 622 GLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKL 681

Query: 583 DLVLYTSVLAHLVRCQDEQNERHLM 607
           DL+ YTS++  L  C   Q  R  +
Sbjct: 682 DLLAYTSLVWGLSHCNQLQKARSFL 706



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 121/275 (44%), Gaps = 4/275 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y  L     ++++ D  L L +E+     K  + L+  +   I  L   +K+E 
Sbjct: 469 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF---IWGLCSLEKIEA 525

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++ +   K ++  Y  LM  +   G P +   + + M++ +  +   T+ ++I 
Sbjct: 526 AKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLID 585

Query: 314 SLAKSGRLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            L K+  +  A+  F  +  +   + +  IF +++D + K  +++ +  ++ +M   G  
Sbjct: 586 GLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLV 645

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y SL++   K G +  AL L D+M   G + +   +T ++   +   +L  A S 
Sbjct: 646 PDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSF 705

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
             +M   G  P       +L+ H   G +D A++L
Sbjct: 706 LEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 172/333 (51%), Gaps = 5/333 (1%)

Query: 218  SLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
             +FD+    + K GIS   ++YN +I  L +    E ++  FK + +  C  D  ++N+L
Sbjct: 773  QIFDKF---TKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNML 829

Query: 277  MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
            + +    G   + FE+Y+ M    C  D  TY ++I SLAKS  LD A+  F ++   +F
Sbjct: 830  LAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDF 889

Query: 337  RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            RP+   +  L+D + K GRL+ +M+++ EM   G +P+  ++  LI  Y K G  +TA +
Sbjct: 890  RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 397  LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
            L+  M   G RP+   +T++++    +G++D A+  F +++  G  P    Y+ ++    
Sbjct: 950  LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLG 1009

Query: 457  SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             S +++ A+ LYN M + G+ P L TY +L+  L    +V+ A ++  E++  G   DV 
Sbjct: 1010 KSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVF 1069

Query: 517  ASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTN 548
              + L+  Y    + +HA    + M   G   N
Sbjct: 1070 TYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 202/455 (44%), Gaps = 19/455 (4%)

Query: 156 DKLQFVPKMVHITQALKVINDSDTSLSLFRWAK---------------RQSWYVPGDECY 200
           DK++ +  +    Q   +  D DT L++F+                  R++ +V     Y
Sbjct: 136 DKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSY 195

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
             L  +L +S      L ++  MV +  K  +  +SA   ++  L K    EM     K+
Sbjct: 196 NGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSA---LMVALGKKRDSEMVMVLLKE 252

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           + D   + +  ++ + + +    G   +A+EI+  M+   C  D  TY ++I +L  +G+
Sbjct: 253 MEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQ 312

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L+ A +LF +MK    +P   I+ +L+D     G LDT  + + +M+  G+ P    +  
Sbjct: 313 LENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI 372

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++   KA   D A   +D MR  G  PN   +  +I    ++G+++ A+ +   ME  G
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVG 432

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             PT  TY   ++    SG+   A++ +  M + G+ P +    A L  LA+   +  A 
Sbjct: 433 VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +   ++  G + D    +++M  Y K G VD A+  L  M  +G   +  +V  L +S 
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSL 552

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            K    + A  + +   +      +V Y ++L+ L
Sbjct: 553 YKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGL 587



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 157/347 (45%), Gaps = 4/347 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           + + + P    Y+ L D  N+  D D     + +M  D     +  F+    ++  L KA
Sbjct: 324 KANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI---LVDVLCKA 380

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
              + ++  F  +       +  +YN L+   L  G    A ++ ++ME         TY
Sbjct: 381 RDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTY 440

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
              I    KSG    A++ F++MK +   P+     + + S+ + GRL  +  ++  ++ 
Sbjct: 441 ITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRE 500

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P +  Y  +++ Y+K G++D A+ L  EM   G  P+  +   +I+S  K+G++D 
Sbjct: 501 NGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDE 560

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +F  M+     PT  TY+ LL      G+V  A++L+ SM      P   ++  LL 
Sbjct: 561 AWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLD 620

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHAL 534
              K   V++A K+  +M  M    DV + + V+   IK+  V+HA 
Sbjct: 621 CFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAF 667



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 185/418 (44%), Gaps = 19/418 (4%)

Query: 186 WAKRQS-WYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQ 243
           W++ ++  Y+P    + +L DVL ++RDFD   + FD M     K GI      YN +I 
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVM----RKQGILPNLHTYNTLIC 410

Query: 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQ----SYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            L +A ++E +     K+LD+   +  Q    +Y   +  F   G   KA E +E M+  
Sbjct: 411 GLLRAGRIEDAL----KLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAK 466

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               +       + SLA+ GRL  A  +F  ++E    P    +  ++    K G++D +
Sbjct: 467 GIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEA 526

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           + +  EM   G  P   +  SLI+S  KAG++D A +++D M+     P    +  ++  
Sbjct: 527 VNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSG 586

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G++  A+ +F  M      P   +++ LL+    + +V+ A+K+++ MT    +P 
Sbjct: 587 LGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPD 646

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLR- 538
           + TY  ++  L K   V+ A     ++K   +   V+   +L   +K G +  A+   R 
Sbjct: 647 VLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARD 706

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           FM     R N    R  +E  M   L E+       + E      +    S L  LVR
Sbjct: 707 FMYQVRFRVN----RSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVR 760



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 137/287 (47%), Gaps = 40/287 (13%)

Query: 202  MLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
            ML  V  +S     +  L+ EM+    K + I+    YN VI  LAK++ L+ +   F  
Sbjct: 828  MLLAVHGKSGKITELFELYKEMISRRCKPDAIT----YNIVISSLAKSNNLDKALDFFYD 883

Query: 261  VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
            ++ SD +   ++Y  L                                   I  LAK GR
Sbjct: 884  LVSSDFRPTPRTYGPL-----------------------------------IDGLAKVGR 908

Query: 321  LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
            L+ A++LF+EM +   +P+  IF  L++  GK G  +T+ +++  M   G RP    Y  
Sbjct: 909  LEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTI 968

Query: 381  LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
            L++    AG++D AL  ++E++  G  P+F  +  II    KS +++ A++++ +M   G
Sbjct: 969  LVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028

Query: 441  FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             +P   TY+ L+     +G V+ A ++Y  +  AGL P + TY AL+
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALI 1075



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 146/309 (47%), Gaps = 1/309 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++++L   DK+E     F+ +     + D  +Y  +      +G   +   +   M K
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRK 185

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
               L+  +Y  +I  L +SG    A+++++ M     +PS   +++L+ ++GK    + 
Sbjct: 186 AGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEM 245

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
            M +  EM+  G RP+   +   I    +AGK+D A  ++  M   G  P+   +T++I+
Sbjct: 246 VMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLID 305

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +   +G+L+ A  +F  M+  G  P    Y  LL+     G +D+  + ++ M + G  P
Sbjct: 306 ALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMP 365

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWL 537
            + T+T L+ +L K +  D A      M+  G   ++   + L+   ++ G ++ AL+ L
Sbjct: 366 DVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL 425

Query: 538 RFMGSSGIR 546
             M S G++
Sbjct: 426 DTMESVGVQ 434



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/416 (18%), Positives = 169/416 (40%), Gaps = 11/416 (2%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T   M+  L    +++    +F+ M+++  R   + + ++  ++   G L     V  +M
Sbjct: 124 TCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKM 183

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G   +A  Y  LI    ++G    AL ++  M   G +P+   ++ ++ +  K    
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           ++ M +  +ME  G  P   T++  + +   +G++D A +++  M   G  P L TYT L
Sbjct: 244 EMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVL 303

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGI 545
           +  L     ++ A ++ ++MK  G+  D      L+    D G +D    +   M + G 
Sbjct: 304 IDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGY 363

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
             +      L +   K   ++ A    +   +     +L  Y +++  L+R    ++   
Sbjct: 364 MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALK 423

Query: 606 LMAILSATKHKAHAF----LCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNV 661
           L+  + +   +  A+        F    +  + V +F +    GI   +         N 
Sbjct: 424 LLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNI------VACNA 477

Query: 662 LLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVM 717
            L  L  MG++  A+ ++    EN L P ++ ++  +     V  +     L++ M
Sbjct: 478 SLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM 533


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 172/333 (51%), Gaps = 5/333 (1%)

Query: 218  SLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
             +FD+    + K GIS   ++YN +I  L +    E ++  FK + +  C  D  ++N+L
Sbjct: 773  QIFDKF---TKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNML 829

Query: 277  MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
            + +    G   + FE+Y+ M    C  D  TY ++I SLAKS  LD A+  F ++   +F
Sbjct: 830  LAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDF 889

Query: 337  RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            RP+   +  L+D + K GRL+ +M+++ EM   G +P+  ++  LI  Y K G  +TA +
Sbjct: 890  RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 397  LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
            L+  M   G RP+   +T++++    +G++D A+  F +++  G  P    Y+ ++    
Sbjct: 950  LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLG 1009

Query: 457  SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             S +++ A+ LYN M + G+ P L TY +L+  L    +V+ A ++  E++  G   DV 
Sbjct: 1010 KSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVF 1069

Query: 517  ASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTN 548
              + L+  Y    + +HA    + M   G   N
Sbjct: 1070 TYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 203/455 (44%), Gaps = 19/455 (4%)

Query: 156 DKLQFVPKMVHITQALKVINDSDTSLSLFRWAK---------------RQSWYVPGDECY 200
           DK++ +  +    Q   +  D DT L++F+                  R++ +V     Y
Sbjct: 136 DKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSY 195

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
             L  +L +S      L ++  MV +  K  +  +SA   ++  L K    EM     K+
Sbjct: 196 NGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSA---LMVALGKKRDSEMVMVLLKE 252

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           + D   + +  ++ + + +    G   +A+EI+  M+   C  D  TY ++I +L  +G+
Sbjct: 253 MEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQ 312

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L+ A +LF +MK    +P   I+ +L+D     G LDT  + + +M+  G+ P    +  
Sbjct: 313 LENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI 372

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++   KA   D A   +D MR  G  PN   +  +I    ++G+++ A+ +   ME  G
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVG 432

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             PT  TY+  ++    SG+   A++ +  M + G+ P +    A L  LA+   +  A 
Sbjct: 433 VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +   ++  G + D    +++M  Y K G VD A+  L  M  +G   +  +V  L +S 
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSL 552

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            K    + A  + +   +      +V Y ++L+ L
Sbjct: 553 YKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGL 587



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 157/347 (45%), Gaps = 4/347 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           + + + P    Y+ L D  N+  D D     + +M  D     +  F+    ++  L KA
Sbjct: 324 KANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI---LVDVLCKA 380

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
              + ++  F  +       +  +YN L+   L  G    A ++  +ME         TY
Sbjct: 381 RDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTY 440

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            + I    KSG    A++ F++MK +   P+     + + S+ + GRL  +  ++  ++ 
Sbjct: 441 NIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRE 500

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P +  Y  +++ Y+K G++D A+ L  EM   G  P+  +   +I+S  K+G++D 
Sbjct: 501 NGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDE 560

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +F  M+     PT  TY+ LL      G+V  A++L+ SM      P   ++  LL 
Sbjct: 561 AWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLD 620

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHAL 534
              K   V++A K+  +M  M    DV + + V+   IK+  V+HA 
Sbjct: 621 CFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAF 667



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 182/414 (43%), Gaps = 11/414 (2%)

Query: 186 WAKRQS-WYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQ 243
           W++ ++  Y+P    + +L DVL ++RDFD   + FD M     K GI      YN +I 
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVM----RKQGILPNLHTYNTLIC 410

Query: 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303
            L +A ++E +      +     +    +YN+ +  F   G   KA E +E M+      
Sbjct: 411 GLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVP 470

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           +       + SLA+ GRL  A  +F  ++E    P    +  ++    K G++D ++ + 
Sbjct: 471 NIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLL 530

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            EM   G  P   +  SLI+S  KAG++D A +++D M+     P    +  ++    K 
Sbjct: 531 SEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKE 590

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G++  A+ +F  M      P   +++ LL+    + +V+ A+K+++ MT    +P + TY
Sbjct: 591 GRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTY 650

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLR-FMGS 542
             ++  L K   V+ A     ++K   +   V+   +L   +K G +  A+   R FM  
Sbjct: 651 NTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQ 710

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              R N    R  +E  M   L E+       + E      +    S L  LVR
Sbjct: 711 VRFRVN----RSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVR 760



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 137/287 (47%), Gaps = 40/287 (13%)

Query: 202  MLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
            ML  V  +S     +  L+ EM+    K + I+    YN VI  LAK++ L+ +   F  
Sbjct: 828  MLLAVHGKSGKITELFELYKEMISRRCKPDAIT----YNIVISSLAKSNNLDKALDFFYD 883

Query: 261  VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
            ++ SD +   ++Y  L                                   I  LAK GR
Sbjct: 884  LVSSDFRPTPRTYGPL-----------------------------------IDGLAKVGR 908

Query: 321  LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
            L+ A++LF+EM +   +P+  IF  L++  GK G  +T+ +++  M   G RP    Y  
Sbjct: 909  LEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTI 968

Query: 381  LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
            L++    AG++D AL  ++E++  G  P+F  +  II    KS +++ A++++ +M   G
Sbjct: 969  LVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028

Query: 441  FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             +P   TY+ L+     +G V+ A ++Y  +  AGL P + TY AL+
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALI 1075



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 146/309 (47%), Gaps = 1/309 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++++L   DK+E     F+ +     + D  +Y  +      +G   +   +   M K
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRK 185

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
               L+  +Y  +I  L +SG    A+++++ M     +PS   +++L+ ++GK    + 
Sbjct: 186 AGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEM 245

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
            M +  EM+  G RP+   +   I    +AGK+D A  ++  M   G  P+   +T++I+
Sbjct: 246 VMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLID 305

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +   +G+L+ A  +F  M+  G  P    Y  LL+     G +D+  + ++ M + G  P
Sbjct: 306 ALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMP 365

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWL 537
            + T+T L+ +L K +  D A      M+  G   ++   + L+   ++ G ++ AL+ L
Sbjct: 366 DVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL 425

Query: 538 RFMGSSGIR 546
             M S G++
Sbjct: 426 GTMESVGVQ 434



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/396 (19%), Positives = 162/396 (40%), Gaps = 15/396 (3%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T   M+  L    +++    +F+ M+++  R   + + ++  ++   G L     V  +M
Sbjct: 124 TCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKM 183

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G   +A  Y  LI    ++G    AL ++  M   G +P+   ++ ++ +  K    
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           ++ M +  +ME  G  P   T++  + +   +G++D A +++  M   G  P L TYT L
Sbjct: 244 EMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVL 303

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGI 545
           +  L     ++ A ++ ++MK  G+  D      L+    D G +D    +   M + G 
Sbjct: 304 IDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGY 363

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
             +      L +   K   ++ A    +   +     +L  Y +++  L+R    ++   
Sbjct: 364 MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALK 423

Query: 606 LMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV------ 659
           L+  + +   +  A+   +F     +       V  F        E+  A+  V      
Sbjct: 424 LLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETF--------EKMKAKGIVPNIVAC 475

Query: 660 NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFD 695
           N  L  L  MG++  A+ ++    EN L P ++ ++
Sbjct: 476 NASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYN 511


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 205/433 (47%), Gaps = 9/433 (2%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAK--RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFD 221
           ++ I + L      DT+L +F W +  ++S  +       ++  +L +     G +S   
Sbjct: 130 VLGIVKGLGFYKKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKG----GRVSAAA 185

Query: 222 EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
            ++H+  K+G  +   AY  +I       +   +   FKK+ +  CK    +YNV++ ++
Sbjct: 186 SLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVY 245

Query: 281 LNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
              G+P+ K   + + M+    + D  TY  +I    +    + A  + +EMK   F P 
Sbjct: 246 GKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPD 305

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              + +L+D  GK+ R   +M+V  EM+G G  PS   Y SLI +YA+ G L+ AL L +
Sbjct: 306 KVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKN 365

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           +M   G +P+   +T ++    K+GK   A+ IF +M   G  P   T++ L++MH + G
Sbjct: 366 QMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRG 425

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           +    MK++  + +    P + T+  LL++  +  +    + +  EMK  G+  +    +
Sbjct: 426 KFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFN 485

Query: 520 VLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
            L+  Y + GS D A+   + M  +G+  +      +  +  +  L++ ++ +L    + 
Sbjct: 486 TLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDG 545

Query: 579 AAKVDLVLYTSVL 591
             K + + Y S+L
Sbjct: 546 RCKPNELTYCSLL 558



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/436 (21%), Positives = 178/436 (40%), Gaps = 39/436 (8%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           + P    Y  L DV  +SR     + +  EM  +     I     YN +I   A+   LE
Sbjct: 302 FSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIV---TYNSLISAYARDGLLE 358

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +     ++++   K D  +Y  L++ F   G    A +I+E M    C  +  T+  +I
Sbjct: 359 DALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALI 418

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
                 G+    +K+F+++K     P    + +L+   G+ G       V+ EM+  G  
Sbjct: 419 KMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFV 478

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    + +LI SY++ G  D A+ ++  M  AG  P+   +  ++ + A+ G    +  +
Sbjct: 479 PERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKV 538

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA------------------ 474
             +M+     P   TY  LL  +A+  +++    L   + S                   
Sbjct: 539 LAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSK 598

Query: 475 -----------------GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
                            G  P ++T  A++++  +R++V  A +IL  MK  G++  ++ 
Sbjct: 599 CDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTT 658

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            + LM +Y +  + + +   LR + + GIR +      +  +  +N     A  +L    
Sbjct: 659 YNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMR 718

Query: 577 ESAAKVDLVLYTSVLA 592
           ES    D++ Y + +A
Sbjct: 719 ESGPAPDIITYNTFIA 734



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/385 (19%), Positives = 163/385 (42%), Gaps = 39/385 (10%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L     ++      + +F+EM ++  K  I  F+A   +I+      K       F+
Sbjct: 379 YTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNA---LIKMHGNRGKFTEMMKVFE 435

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +    C  D  ++N L+++F   G+  +   +++ M++     +  T+  +I S ++ G
Sbjct: 436 DIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCG 495

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+ +++ M E    P  + + +++ ++ + G    S KV  EM+    +P+   Y 
Sbjct: 496 SFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYC 555

Query: 380 SLIESYAKAGKLDTALRLWDE-----------------------------------MRIA 404
           SL+ +YA   +++    L +E                                   +R  
Sbjct: 556 SLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQR 615

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           GF P+      ++  + +   +  A  I   M+R GF P+ +TY+ L+ M++ S   + +
Sbjct: 616 GFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERS 675

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV- 523
            ++   + + G+RP + +Y  ++    +   +  A+++L EM+  G + D+   +  +  
Sbjct: 676 EEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIAS 735

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTN 548
           Y  D     A+  + +M   G + N
Sbjct: 736 YAADSMFVEAIDVVCYMIKHGCKPN 760



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 150/349 (42%), Gaps = 7/349 (2%)

Query: 155 LDKLQFVPKMVHITQALKVI--NDSDTSLS-LFRWAKRQSWYVPGDECYVMLFDVLNESR 211
           +   Q  P +V     L V   N  D+ +S +F+  KR + +VP  + +  L    +   
Sbjct: 437 IKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKR-AGFVPERDTFNTLISSYSRCG 495

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
            FD  ++++  M+       +S   +YN V+  LA+    + S     ++ D  CK +  
Sbjct: 496 SFDQAMAVYKRMLEAGVNPDLS---SYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNEL 552

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y  L+  + N     +   + E +  G         + ++   +K   L    + F E+
Sbjct: 553 TYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLEL 612

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           ++R F P      ++V   G+   +  + ++   M+  G  PS   Y SL+  Y+++   
Sbjct: 613 RQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANF 672

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + +  +  E+   G RP+   +  +I ++ ++G++  A  + ++M  +G  P   TY+  
Sbjct: 673 ERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTF 732

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           +  +A+      A+ +   M   G +P  STY +++    K    D A+
Sbjct: 733 IASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEAS 781


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 185/389 (47%), Gaps = 4/389 (1%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI-YE 294
           SAY  ++   ++A +   +   F++++D   +    +YNV++ ++    +P+K   +  +
Sbjct: 186 SAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVVLVD 245

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           SM++    LD  TY  +I    + G    A ++F EMK   F P    F SL+D  GKA 
Sbjct: 246 SMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKAR 305

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R + ++ V  +M+  G  PS   Y SLI +Y K G L+ AL L  EM   G +P+   +T
Sbjct: 306 RHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYT 365

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    + GK+D A++ +++M R G  P   TY+ L++MH   G+    M +++ + SA
Sbjct: 366 TLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSA 425

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY--SVDVSASDVLMVYIKDGSVDH 532
           G  P + T+  LL +  +  L    + +  EMK  GY    D   S ++  Y + G  D 
Sbjct: 426 GYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS-LISSYSRCGLFDQ 484

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A+   + M  +GI  +      +  +  +   +  A+ L     +   K D + Y+S+L 
Sbjct: 485 AMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLH 544

Query: 593 HLVRCQDEQNERHLMAILSATKHKAHAFL 621
                +     + L   + A + + H +L
Sbjct: 545 AYANAKKLDKMKALSEDIYAQRIEPHNWL 573



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 169/422 (40%), Gaps = 71/422 (16%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N ++    KA + E +    KK+ ++ C     +YN L++ ++  GL  +A E+ + ME
Sbjct: 294 FNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEME 353

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR-- 355
                 D  TY  +I  L + G++DAA+  + EM      P+   + +L+   G  G+  
Sbjct: 354 FRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFT 413

Query: 356 --------------------------------LDTSMK-VYMEMQGCGHRPSAPMYVSLI 382
                                           LD+ +  V+ EM+  G+ P    YVSLI
Sbjct: 414 EMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLI 473

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
            SY++ G  D A+ ++  M  AG  P+   +  ++ + A+ G+   A  +F +ME     
Sbjct: 474 SSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCK 533

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP------------------------ 478
           P   +YS LL  +A++ ++D    L   + +  + P                        
Sbjct: 534 PDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKA 593

Query: 479 -----------GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIK 526
                       ++   A++++  K K+V    ++L  MK    +   +  + LM +Y +
Sbjct: 594 FQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSR 653

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
            G  +     L  + SSG+R + +    +  +  +    + A  L      S  K D+V 
Sbjct: 654 LGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVT 713

Query: 587 YT 588
           Y 
Sbjct: 714 YN 715



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 143/330 (43%), Gaps = 37/330 (11%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP---SFNI--------------FASL 346
           D S Y  ++   +++GR   A+ +F+ M +   +P   ++N+                 L
Sbjct: 184 DASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVVL 243

Query: 347 VDSMGKAG-RLD------------------TSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           VDSM + G  LD                   + +++ EM+  G  P    + SL++ Y K
Sbjct: 244 VDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGK 303

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           A + + A+ +  +M  AG  P+   +  +I ++ K G L+ A+ +  +ME  G  P   T
Sbjct: 304 ARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVT 363

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+      G++D+A+  Y+ M   G  P L TY AL+ +   R        +  +++
Sbjct: 364 YTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLR 423

Query: 508 TMGYSVDVSASDVLMVYIKDGSVDHALRWL-RFMGSSGIRTNNFIVRQLFESCMKNALYE 566
           + GY  DV   + L+       +D  +  + + M  +G          L  S  +  L++
Sbjct: 424 SAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 483

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            A  + +  +E+    D+  Y +VL+ L R
Sbjct: 484 QAMEIYKRMIEAGIYPDISTYNAVLSALAR 513



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 157/373 (42%), Gaps = 44/373 (11%)

Query: 160 FVPKMVHITQALKVI--NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGML 217
           +VP +V     L V   N  D+ +S      +++ Y+P  + YV L    +    FD  +
Sbjct: 427 YVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAM 486

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
            ++  M+       IS    YN V+  LA+  +   +   F ++ D DCK D  SY+ L+
Sbjct: 487 EIYKRMIEAGIYPDIS---TYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLL 543

Query: 278 TLFLN-------KGLPYKAF----------------------------EIYESMEKGECS 302
             + N       K L    +                            + ++ + +  CS
Sbjct: 544 HAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCS 603

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           LD +    M+    K+  +    ++   MKE +   S   + SL+    + G  +    +
Sbjct: 604 LDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAI 663

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
             E++  G RP    Y ++I +Y + G++  A RL+ EM+ +G +P+   + + I+S+  
Sbjct: 664 LTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVA 723

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           +   + A+ +   +   G  P   TY+ +LE +   G++  A    +++    + PG+S 
Sbjct: 724 NLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVEAKSFLSNLPK--IYPGISK 781

Query: 483 YTA--LLTLLAKR 493
                LL LLAKR
Sbjct: 782 EEKHRLLELLAKR 794



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 144/316 (45%), Gaps = 1/316 (0%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           FK++  +    +  +Y  L++ +   GL  +A EIY+ M +     D STY  ++ +LA+
Sbjct: 454 FKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALAR 513

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            GR   A KLF EM++R+ +P    ++SL+ +   A +LD    +  ++      P   +
Sbjct: 514 GGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWL 573

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
             +L+    K   L    + + E+R      +  +   ++  + K+  +     + T M+
Sbjct: 574 VKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMK 633

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
                 + +TY+ L+ M++  G  +    +   + S+G+RP   +Y  ++    ++  + 
Sbjct: 634 ENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMK 693

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A+++  EMK  G   D+   ++ +  Y+ +   + A+  +R++ + G + N      + 
Sbjct: 694 EASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSIL 753

Query: 557 ESCMKNALYESAKPLL 572
           E   ++     AK  L
Sbjct: 754 EGYCRHGRMVEAKSFL 769



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 101/227 (44%), Gaps = 3/227 (1%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P A  Y +L+  +++AG+   A+ ++  M   G +P    + +++  ++K       + +
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVV 242

Query: 433 FTD-MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
             D M+  G      TY+ L+      G    A ++++ M +AG  P   T+ +LL +  
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG 302

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           K +  + A  +L +M+  G +  V   + L+  Y+KDG ++ AL   + M   G++ +  
Sbjct: 303 KARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVV 362

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA-HLVR 596
               L     +    ++A       V +    +L  Y +++  H VR
Sbjct: 363 TYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVR 409


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 185/385 (48%), Gaps = 5/385 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D+++ +FR  K +    P +  Y  L + L ++       S FD M+       I     
Sbjct: 117 DSAMEMFREMKIKGSE-PDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIP---T 172

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++    K  +L+M+   F ++     +    +YN+L+    + G    A +++  M 
Sbjct: 173 YNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMT 232

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              CS D  TY  ++  L KSGR++ A K+F+EM +R        + SL+ ++ KAG +D
Sbjct: 233 GDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMD 292

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              K+  EM   G  P A  + +++++  KA K D A  ++  M  +G +P+   + ++I
Sbjct: 293 RVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILI 352

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +S+A+ G    A  +  +M  AGF+P   TY+ L+   A+ GQVD A  +   M +AG R
Sbjct: 353 DSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCR 412

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK-DGSVDHALRW 536
           P + TY  L+ +L KR     AA++  +MK  G   D  +  V +  +  D  +D AL  
Sbjct: 413 PDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVL 472

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMK 561
            + M + G   +  + R L  +  +
Sbjct: 473 FKDMKAVGCPVDKAMYRILIRAAHR 497



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 171/338 (50%), Gaps = 4/338 (1%)

Query: 274 NVLMTLFLNKGLPYK---AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           N L+ L    G   K   AF+++   E   CS     +  +I  L  SG  + A  ++++
Sbjct: 31  NTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKK 90

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           + ++  +     +  L+   G++G+LD++M+++ EM+  G  P    Y  L+ +  KAG+
Sbjct: 91  LVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGR 150

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +  A   +D M   G  PN   + +++++  K G+LD+A+ +F +M+R GF P+  TY+ 
Sbjct: 151 VQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNI 210

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           LL+   S+G+V +A KL++ MT  G  P   TY+ L+  L K   V+ A K+  EM   G
Sbjct: 211 LLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRG 270

Query: 511 YSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            +VD V+ + +L    K G++D   + ++ M   G   + F    + ++  K    ++A+
Sbjct: 271 VAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAR 330

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
            +    VES  K DL+ Y  ++    R  D    R ++
Sbjct: 331 EVFARMVESGCKPDLISYNILIDSYARFGDAAQARQML 368



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 184/384 (47%), Gaps = 12/384 (3%)

Query: 213 FDGMLSLFDEMVHDSS----KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
            D + +L  EMV +         + L +AY R        +K   ++  F +     C  
Sbjct: 11  LDPLETLLKEMVAEGRPLRPNTLVKLITAYGR-------GNKSGDAFDLFNQAESFACSP 63

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
              ++  L+ + +N G   +A  +Y+ + +  C LD   Y ++I    +SG+LD+A+++F
Sbjct: 64  TVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMF 123

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EMK +   P    +  LV+++GKAGR+  +   +  M   G  P+ P Y  L++++ K 
Sbjct: 124 REMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKV 183

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+LD AL L+ EM+  GF+P+   + +++++   +G++  A  +F  M   G  P   TY
Sbjct: 184 GQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTY 243

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S L+     SG+V+ A K++  M   G+   L  Y +LL  LAK   +D   K++ EM  
Sbjct: 244 STLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSR 303

Query: 509 MGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G+  D  + + +M  + K    D A      M  SG + +      L +S  +      
Sbjct: 304 KGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQ 363

Query: 568 AKPLLETYVESAAKVDLVLYTSVL 591
           A+ +LE  VE+    +   Y S++
Sbjct: 364 ARQMLEEMVEAGFIPETKTYNSLI 387



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 217/455 (47%), Gaps = 11/455 (2%)

Query: 141 VVNRWKWGPELETQLDKLQFVPKMVHITQALKVI------NDSDTSLSLFRWAKRQSWYV 194
           V+  W     LET L ++    + +     +K+I      N S  +  LF  A+  +   
Sbjct: 4   VLASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFAC-S 62

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    +  L D+L  S +F+    ++ ++V    +  +  F AYN +I+Y  ++ +L+ +
Sbjct: 63  PTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQ--LDRF-AYNVLIRYFGRSGQLDSA 119

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F+++     + D  +Y  L+      G   +A   +++M +   + +  TY L++ +
Sbjct: 120 MEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDA 179

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K G+LD A+ LF EMK R F+PS   +  L+D++  AGR+  + K++ +M G G  P 
Sbjct: 180 FRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPD 239

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           +  Y +L+    K+G+++ A +++ EM   G   +   +  ++ + AK+G +D    +  
Sbjct: 240 SYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMK 299

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M R GF P   +++ +++    + + D+A +++  M  +G +P L +Y  L+   A+  
Sbjct: 300 EMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFG 359

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
               A ++L EM   G+  +    + L+ ++  DG VD A   L  M ++G R +     
Sbjct: 360 DAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYN 419

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
           +L +   K    + A  L +   +   + D + Y 
Sbjct: 420 RLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYA 454



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 146/316 (46%), Gaps = 6/316 (1%)

Query: 161 VPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLF 220
           +P    +  A + +   D +L LF   KR+  + P    Y +L D L  +        LF
Sbjct: 170 IPTYNLLMDAFRKVGQLDMALGLFAEMKRRG-FQPSVVTYNILLDALCSAGRVGAARKLF 228

Query: 221 DEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
            +M  D    G S  S  Y+ ++  L K+ ++E ++  F++++D    +D  +YN L+  
Sbjct: 229 HKMTGD----GCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLAT 284

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
               G   + +++ + M +     D  ++  ++ +L K+ + DAA ++F  M E   +P 
Sbjct: 285 LAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPD 344

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              +  L+DS  + G    + ++  EM   G  P    Y SLI   A  G++D A  + +
Sbjct: 345 LISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLE 404

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           EM  AG RP+   +  +++   K G+   A  +F  M+  G  P   +Y+  ++  A   
Sbjct: 405 EMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDD 464

Query: 460 QVDSAMKLYNSMTSAG 475
           ++D A+ L+  M + G
Sbjct: 465 RLDEALVLFKDMKAVG 480



 Score =  106 bits (264), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 166/396 (41%), Gaps = 13/396 (3%)

Query: 311 MIPSLAKSGRLDAAIKLFQEM--KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
           M+  LA  G LD    L +EM  + R  RP  N    L+ + G+  +   +  ++ + + 
Sbjct: 1   MLVVLASWGILDPLETLLKEMVAEGRPLRP--NTLVKLITAYGRGNKSGDAFDLFNQAES 58

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
               P+   +  LI+    +G+ + A  ++ ++   G + +   + ++I    +SG+LD 
Sbjct: 59  FACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDS 118

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           AM +F +M+  G  P   TY  L+     +G+V  A   +++M   GL P + TY  L+ 
Sbjct: 119 AMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMD 178

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT 547
              K   +D+A  +  EMK  G+   V   ++L+      G V  A +    M   G   
Sbjct: 179 AFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSP 238

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           +++    L     K+   E A  +    V+    VDLV Y S+LA L +  +      LM
Sbjct: 239 DSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLM 298

Query: 608 AILSATKHKAHAF-LCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV--NVLLN 664
             +S       AF    +     +  +P     RE F  +   +E G     +  N+L++
Sbjct: 299 KEMSRKGFHPDAFSFNTIMDALGKANKP--DAAREVFARM---VESGCKPDLISYNILID 353

Query: 665 YLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAW 700
                G   +AR + +   E    P+   ++  I W
Sbjct: 354 SYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHW 389


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/557 (22%), Positives = 243/557 (43%), Gaps = 30/557 (5%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +   VL      D    +   M  D     +     Y  +I  L  A KL+ +
Sbjct: 262 PNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVV---TYTVLIDALCTARKLDDA 318

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
            C F K+  S  K D  +Y  L+  F + G   K  +I+  ME    + D  T+ +++ +
Sbjct: 319 MCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNA 378

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+GR++ A  L   M+++   P+ + + +L+  + +A RLD ++ ++  M+  G  P+
Sbjct: 379 LCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPT 438

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           A  Y+ LI+ + K+G    AL  +++M+  G  PN       + S A+ G+L  A ++F 
Sbjct: 439 AYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFN 498

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +++ +G  P   TY+ +++ ++  GQVD A+KL + M+     P +    +L+  L K  
Sbjct: 499 ELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAG 558

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            V+ A ++   M+ M  +  V   ++L+  + K+G +  A++    M   G   N     
Sbjct: 559 RVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFN 618

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
            L +   KN   + A  +         + D++ + +++   ++    +N   L   +   
Sbjct: 619 TLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL 678

Query: 614 KHKAHAFLCGLFTGPEQRKQPVLSF--VREFFHGIDYELEEGAARYFVNVLLNYLVLMGQ 671
               H  LC L  G  +  Q   +F    +FF+ +   ++     ++ +V+   L   G 
Sbjct: 679 LRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRS---FWEDVMGGILTEAGT 735

Query: 672 INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYG 731
                             KAI+F + +      ++ SV   LI ++  L + +K  +   
Sbjct: 736 -----------------EKAILFGERLVCRAICKDDSV---LIPIIKVLCKHKKTSVARN 775

Query: 732 VVPRRIK-LVTGPTLKI 747
           V  +  K L   PTLK+
Sbjct: 776 VFVKFTKELGVKPTLKV 792



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 163/322 (50%), Gaps = 1/322 (0%)

Query: 235  FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
               YN +I    +   +E+++  F+++  + C  DT +YN L+      G   + F++Y+
Sbjct: 790  LKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYD 849

Query: 295  SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
             M    C  +  TY ++I +L KS RLD A+ L+  +   +F P+   F  L+D + K+G
Sbjct: 850  EMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSG 909

Query: 355  RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            RLD + +++  M   G RP++ +Y  L+  Y K G +DTA   +  M   G RP+   +T
Sbjct: 910  RLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYT 969

Query: 415  MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++++    +G++D A+  F  +++AG  P    Y+ ++     S + + A+ L++ M + 
Sbjct: 970  ILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNR 1029

Query: 475  GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            G+ P L TY +L+  L    +++ A KI  E++ +G   +V   + L+  Y   G+ + A
Sbjct: 1030 GIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELA 1089

Query: 534  LRWLRFMGSSGIRTNNFIVRQL 555
                + M   G   N     QL
Sbjct: 1090 YGIYKKMMVGGCDPNTGTFAQL 1111



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 174/394 (44%), Gaps = 36/394 (9%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +I +L ++   + +   +++++    K   ++++ LM     +        + E M
Sbjct: 196 SYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEM 255

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      +  TY + I  L + G++D A ++ + M +    P    +  L+D++  A +L
Sbjct: 256 ESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKL 315

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +M ++ +M+   H+P    YV+L++ ++  G LD   ++W EM   G+ P+   FT++
Sbjct: 316 DDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTIL 375

Query: 417 IESHAKSG-----------------------------------KLDIAMSIFTDMERAGF 441
           + +  K+G                                   +LD A+ +F++ME  G 
Sbjct: 376 VNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGV 435

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            PT  TY  L++ H  SG    A++ +  M + G+ P +    A L  LA+   +  A  
Sbjct: 436 EPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKA 495

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +  E+K+ G + D    +++M  Y K G VD A++ L  M       +  ++  L ++  
Sbjct: 496 MFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLY 555

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           K    E A  +     E      +V Y  +LA L
Sbjct: 556 KAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGL 589



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 153/318 (48%), Gaps = 2/318 (0%)

Query: 241  VIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I+ L K  K  ++   F K       K   + YN+L+  FL       A+ ++E M+  
Sbjct: 760  IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819

Query: 300  ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             C+ D  TY  +I +  KSG+++    L+ EM  R  +P+   +  ++ ++ K+ RLD +
Sbjct: 820  GCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKA 879

Query: 360  MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            M +Y  +      P+   +  LI+   K+G+LD A  ++D M   G RPN  ++ +++  
Sbjct: 880  MDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNG 939

Query: 420  HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
            + K G +D A   F  M + G  P   +Y+ L+++   +G+VD A+  +  +  AGL P 
Sbjct: 940  YGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPD 999

Query: 480  LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLR 538
            L  Y  ++  L + +  + A  +  EM+  G   D+   + L++ +   G ++ A +   
Sbjct: 1000 LVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYE 1059

Query: 539  FMGSSGIRTNNFIVRQLF 556
             +   G++ N F    L 
Sbjct: 1060 ELQFIGLKPNVFTYNALI 1077



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 148/315 (46%), Gaps = 41/315 (13%)

Query: 174  INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGI 232
            +++ + + +LF   K  +   P    Y  L D   +S   + +  L+DEM+    K N I
Sbjct: 803  VHNVEVAWNLFEEMK-SAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTI 861

Query: 233  SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
            +    YN VI  L K+++L+                                   KA ++
Sbjct: 862  T----YNMVISNLVKSNRLD-----------------------------------KAMDL 882

Query: 293  YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            Y ++  G+ S    T+  +I  L KSGRLD A ++F  M     RP+  I+  LV+  GK
Sbjct: 883  YYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGK 942

Query: 353  AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
             G +DT+ + +  M   G RP    Y  L++    AG++D AL  +++++ AG  P+   
Sbjct: 943  LGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVA 1002

Query: 413  FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
            + ++I    +S + + A+S+F +M+  G +P   TY+ L+      G ++ A K+Y  + 
Sbjct: 1003 YNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQ 1062

Query: 473  SAGLRPGLSTYTALL 487
              GL+P + TY AL+
Sbjct: 1063 FIGLKPNVFTYNALI 1077



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 111/531 (20%), Positives = 211/531 (39%), Gaps = 6/531 (1%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
            +   L  I+D   +L  F+        V   E    + ++L   R  + M  +FD M  
Sbjct: 93  EVLGVLHSISDPIHALFYFKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQR 152

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
              +  +     Y  + + L     L  +    +K+ ++   ++  SYN L+   L  G 
Sbjct: 153 QIIRRNVD---TYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGF 209

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +A E+Y  M          T+  ++ +  K   +   + L +EM+    RP+   +  
Sbjct: 210 CKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTI 269

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
            +  +G+ G++D + ++   M   G  P    Y  LI++   A KLD A+ L+ +M+ + 
Sbjct: 270 CIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSS 329

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +P+   +  +++  +  G LD    I+T+ME  G+ P   T++ L+     +G+++ A 
Sbjct: 330 HKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAF 389

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
            L ++M   G+ P L TY  L++ L +   +D A  +   M+++G         +L+ Y 
Sbjct: 390 DLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYH 449

Query: 526 -KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
            K G    AL     M + GI  N         S  +      AK +      S    D 
Sbjct: 450 GKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDS 509

Query: 585 VLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFH 644
           V Y  ++    +         L++ +S  + +    +         +   V    + F  
Sbjct: 510 VTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCR 569

Query: 645 GIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFD 695
             +  L      Y  N+LL  L   GQI +A  +++    +   P  I F+
Sbjct: 570 MEEMNLAPTVVTY--NILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFN 618


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/500 (24%), Positives = 228/500 (45%), Gaps = 11/500 (2%)

Query: 219 LFDEMVHDSSKN-GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +FDE+   S++N  +  F  ++ +   L     LE +  CF K+        T+S N L+
Sbjct: 48  VFDELW--STRNVCVPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLL 105

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             F   G        ++ M          TY +MI  + K G ++AA  LF+EMK R   
Sbjct: 106 HKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLI 165

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P    + S++D  GK GRLD ++  + EM+     P    Y SLI  + K+GKL   L  
Sbjct: 166 PDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEF 225

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           + EM+ +G +PN   ++ ++++  K   +  A+  + DM R G +P   TY+ L++ +  
Sbjct: 226 YREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCK 285

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G +  A +L N M   G+   + TYTAL+  L   + +  A K+  +M T G   ++++
Sbjct: 286 IGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLAS 345

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            + L+  ++K  ++D AL  L  +   GI+ +  +              E+AK ++    
Sbjct: 346 YNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQ 405

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF-LCGLFTGPEQRKQPV 635
           E+  K + ++YT+++    +  +     HL+  +    H+      C L  G  + K  +
Sbjct: 406 ENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNK--L 463

Query: 636 LSFVREFFHGI--DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIV 693
           +S   ++F  +  D+ L+  AA Y    +++ L    Q+  A  +++   +  L P    
Sbjct: 464 VSKAIDYFGRMSNDFGLQPNAAVY--TAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTA 521

Query: 694 FDQHIAWSLDVRNLSVGAAL 713
           +   +  +L   N+    AL
Sbjct: 522 YTSLMDGNLKQGNMLEALAL 541



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 191/418 (45%), Gaps = 17/418 (4%)

Query: 186 WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY------N 239
           W+ R    VPG   +  LF VL +       L + +E     SK  +  F  +      N
Sbjct: 53  WSTRNVC-VPGFGVFDALFSVLID-------LGMLEEATQCFSK--MKRFRVFPKTRSCN 102

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++   AK  K +     FK ++ +  K    +YN+++     +G    A  ++E M+  
Sbjct: 103 GLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFR 162

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY  MI    K GRLD  +  F+EMK  +  P    + SL++   K+G+L   
Sbjct: 163 GLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKG 222

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           ++ Y EM+  G +P+   Y +L++++ K   +  A++ + +MR  G  PN   +T ++++
Sbjct: 223 LEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDA 282

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L  A  +  +M   G      TY+ L++    + ++  A KL+  M +AG+ P 
Sbjct: 283 NCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPN 342

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLR 538
           L++Y AL+    K K +D A ++L E+K  G   D+      +  +     ++ A   + 
Sbjct: 343 LASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMN 402

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            M  +GI+ N  I   L ++  K+        LLE   E   +V +V +  ++  L +
Sbjct: 403 EMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCK 460



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 177/434 (40%), Gaps = 6/434 (1%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           D + +  LF   K +   +P    Y  + D   +    D  +  F+EM   S +  +   
Sbjct: 148 DIEAARGLFEEMKFRGL-IPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVI-- 204

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
             YN +I    K+ KL      ++++  S  K +  SY+ L+  F  + +  +A + Y  
Sbjct: 205 -TYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVD 263

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +     +  TY  ++ +  K G L  A +L  EM E     +   + +L+D +  A R
Sbjct: 264 MRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAER 323

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  + K++ +M   G  P+   Y +LI  + KA  +D AL L +E++  G +P+  L+  
Sbjct: 324 MKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGT 383

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
            I       K++ A  +  +M+  G       Y+ L++ +  SG     + L   M    
Sbjct: 384 FIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELD 443

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT-MGYSVDVSASDVLMVYI-KDGSVDHA 533
               + T+  L+  L K KLV  A      M    G   + +    ++  + K+  V  A
Sbjct: 444 HEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAA 503

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
                 M   G+  +      L +  +K      A  L +   E   K+DL+ YTS++  
Sbjct: 504 TTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWG 563

Query: 594 LVRCQDEQNERHLM 607
             +C   Q  R  +
Sbjct: 564 FSQCNQLQKARSFL 577



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 122/275 (44%), Gaps = 4/275 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y  L     ++++ D  L L +E+     +  + L+  +   I  L   +K+E 
Sbjct: 340 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTF---IWGLCGLEKIEA 396

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++ ++  K +T  Y  LM  +   G P +   + E M++ +  +   T+ ++I 
Sbjct: 397 AKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLID 456

Query: 314 SLAKSGRLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            L K+  +  AI  F  M  +   +P+  ++ +++D + K  ++  +  ++ +M   G  
Sbjct: 457 GLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLV 516

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y SL++   K G +  AL L D+M   G + +   +T ++   ++  +L  A S 
Sbjct: 517 PDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSF 576

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
             +M     LP       +L+ H   G +D A+ L
Sbjct: 577 LEEMIGEEILPDEVLCIGVLKKHYELGCIDEAVGL 611


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 174/359 (48%), Gaps = 4/359 (1%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-AFEIYE 294
           SAY  ++   ++A +   +   F++++D   +    +YNV+   +    +P+K    + +
Sbjct: 185 SAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVD 244

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           SM++     D  TY  +I    + G    A ++F EMK   F P    F SL+D  GKA 
Sbjct: 245 SMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKAR 304

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           + + ++ V   M+  G  PS   Y SLI +Y K G L+ AL L  EM   G +P+   +T
Sbjct: 305 KHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYT 364

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    + GK+D A++ +++M R G  P   TY+ L+++H   G+    M +++ + SA
Sbjct: 365 TLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSA 424

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY--SVDVSASDVLMVYIKDGSVDH 532
           G  P + T+  LL++  +  L    + +  EMK  GY    D   S ++  Y + G  D 
Sbjct: 425 GYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS-LISSYSRCGLFDQ 483

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           A+   + M  +GI  +      +  +  +   +E A+ L    V+   K D + Y+S+L
Sbjct: 484 AMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLL 542



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 152/307 (49%), Gaps = 2/307 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  ++N L+ ++       +A  + + ME   C+    TY  +I +  K G L+ A++L 
Sbjct: 289 DKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELK 348

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           QEM+ R  +P    + +L+  + + G++D ++  Y EM   G  P+   Y +LI+ +   
Sbjct: 349 QEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVR 408

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           GK    + ++D++R AG+ P+   +  ++    ++G       +F +M++AG++P   TY
Sbjct: 409 GKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTY 468

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             L+  ++  G  D AM++Y  M  AG+ P +STY A+L+ LA+    + A K+  EM  
Sbjct: 469 VSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVD 528

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK-NALYE 566
                D +S S +L  Y     +D        + +  I  +N++V+ L     K N L E
Sbjct: 529 RDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPE 588

Query: 567 SAKPLLE 573
           + K   E
Sbjct: 589 TEKAFQE 595



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 170/394 (43%), Gaps = 6/394 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L   L+     D  L+ + EMV    +NG S     YN +I+      K       F
Sbjct: 363 YTTLISGLDRVGKIDAALATYSEMV----RNGCSPNLCTYNALIKLHGVRGKFTEMMAVF 418

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             +  +    D  ++N L+++F   GL  +   +++ M+K     +  TY  +I S ++ 
Sbjct: 419 DDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 478

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G  D A+++++ M E    P  + + +++ ++ + GR + + K++ EM     +P    Y
Sbjct: 479 GLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSY 538

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SL+ +YA A KLD    L +++       +  L   ++  + K   L      F ++ R
Sbjct: 539 SSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRR 598

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
                  +  + ++ ++  +  V    ++ + M    +    +TY +L+ + ++    + 
Sbjct: 599 RRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEK 658

Query: 499 AAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
              IL E+K+ G   D  S + V+  Y + G +  A R    M  SG++ +        +
Sbjct: 659 CESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIK 718

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           S + N ++E A  L+   V    + +   + S+L
Sbjct: 719 SYVANIMFEEAIDLVRYLVTQGCRPNERTFNSIL 752



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 157/373 (42%), Gaps = 46/373 (12%)

Query: 160 FVPKMVHITQALKVI--NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGML 217
           +VP +V     L V   N  D+ +S      +++ Y+P  + YV L    +    FD  +
Sbjct: 426 YVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAM 485

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
            ++  M+       IS    YN V+  LA+  + E +   F +++D DCK D  SY+ L+
Sbjct: 486 EIYKRMIEAGIYPDIS---TYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLL 542

Query: 278 TLFLN------------------------------------KGLPYKAFEIYESMEKGEC 301
             + N                                      LP +  + ++ + +  C
Sbjct: 543 HAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLP-ETEKAFQELRRRRC 601

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           SLD +    M+    K+  +    ++   M E +   S   + SL+    + G  +    
Sbjct: 602 SLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCES 661

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           +  E++  G RP    Y ++I +Y + G++  A RL+ EM+ +G +P+   + + I+S+ 
Sbjct: 662 ILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYV 721

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
            +   + A+ +   +   G  P   T++ +L+ ++  G++  A    +++    + PG+S
Sbjct: 722 ANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKSFLSNLPK--IYPGIS 779

Query: 482 TYTA--LLTLLAK 492
                 L  LLAK
Sbjct: 780 KQEKQRLSELLAK 792



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 134/331 (40%), Gaps = 72/331 (21%)

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA--------- 388
           P  + + +LV +  +AGR   ++ V+  M   G +P+   Y  +  +Y+K          
Sbjct: 182 PDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVA 241

Query: 389 ---------------------------GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
                                      G    A +++DEM+ AGF P+   F  +++ + 
Sbjct: 242 LVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYG 301

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           K+ K + A+ +   ME AG  P+  TY+ L+  +   G ++ A++L   M   G++P + 
Sbjct: 302 KARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVV 361

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL------------MVYIKD-- 527
           TYT L++ L +   +D A     EM   G S ++   + L            M+ + D  
Sbjct: 362 TYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDL 421

Query: 528 ---GSVDHALRW---LRFMGSSGI-----------RTNNFIVRQ-----LFESCMKNALY 565
              G V   + W   L   G +G+           +   +I  +     L  S  +  L+
Sbjct: 422 RSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLF 481

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           + A  + +  +E+    D+  Y +VL+ L R
Sbjct: 482 DQAMEIYKRMIEAGIYPDISTYNAVLSALAR 512


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 203/433 (46%), Gaps = 9/433 (2%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVP--GDECYVMLFDVLNESRDFDGMLSLFD 221
           ++ I +AL   N  D +L++F W +  +            ++  +L ++    G +S   
Sbjct: 123 ILGIIKALGFSNKCDLALAVFHWVRTNNSNTNLFSSSAIPVIIKILGKA----GRVSSAA 178

Query: 222 EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
            ++     +G+ +   AY  +I   + + +   +   F K+    C     +YNV++ ++
Sbjct: 179 SLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVY 238

Query: 281 LNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
              G+P+     + E+M     + D  TY  +I    +    + A+ LFQ+MK   F P 
Sbjct: 239 GKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPD 298

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              + +L+D  GK+ R   +MKV  EM+  G  P++  Y SLI +YAK G L+ AL L  
Sbjct: 299 KVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKT 358

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           +M   G +P+   +T ++    K+GK D A+ +F +M   G  P   T++ L++MH + G
Sbjct: 359 QMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRG 418

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           +    MK+++ +      P + T+  LL +  +  +    + I  EMK  G+  +    +
Sbjct: 419 KFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFN 478

Query: 520 VLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
            L+  Y + GS D A+   + M  +G+  +      +  +  +  L+E ++ +L    + 
Sbjct: 479 TLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDG 538

Query: 579 AAKVDLVLYTSVL 591
             K + + Y+S+L
Sbjct: 539 RCKPNELSYSSLL 551



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 168/339 (49%), Gaps = 2/339 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    +    E +   F+++       D  +YN L+ +F     P +A ++ + M
Sbjct: 266 TYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEM 325

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E    S    TY  +I + AK G L+ A+ L  +M  +  +P    + +L+    KAG+ 
Sbjct: 326 EANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKD 385

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +++V++EM+  G +P+   + +LI+ +   GK    ++++D++++    P+   +  +
Sbjct: 386 DFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTL 445

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    ++G       IF +M+RAGF+    T++ L+  ++  G  D AM +Y SM  AG+
Sbjct: 446 LAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGV 505

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKT-MGYSVDVSASDVLMVYIKDGSVDHALR 535
            P LSTY A+L  LA+  L + + K+L EM+       ++S S +L  Y     ++    
Sbjct: 506 VPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNA 565

Query: 536 WLRFMGSSGIRTNNFIVRQL-FESCMKNALYESAKPLLE 573
           +   + S  + T+  +++ L   +   + L E+ +  LE
Sbjct: 566 FAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLE 604



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/421 (21%), Positives = 177/421 (42%), Gaps = 7/421 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS- 236
           + ++ LF+  K +  + P    Y  L DV  +SR     + +  EM      NG S  S 
Sbjct: 281 EEAVHLFQQMKLEG-FTPDKVTYNALLDVFGKSRRPQEAMKVLQEM----EANGFSPTSV 335

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I   AK   LE +     +++    K D  +Y  L++ F   G    A +++  M
Sbjct: 336 TYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEM 395

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  T+  +I      G+    +K+F ++K  N  P    + +L+   G+ G  
Sbjct: 396 RAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMD 455

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
                ++ EM+  G       + +LI +Y++ G  D A+ ++  M  AG  P+   +  +
Sbjct: 456 SQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAV 515

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + + A+ G  + +  +  +ME     P   +YS LL  +A+  +++        + S  +
Sbjct: 516 LAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSV 575

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
                    L+ + +K  L+    +  LE++  G S D++  + ++ +Y +   V  A  
Sbjct: 576 ETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHE 635

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L FM  +    +      L     ++  ++ ++ +L   +E   K D + Y +V+    
Sbjct: 636 ILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYC 695

Query: 596 R 596
           R
Sbjct: 696 R 696



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/393 (20%), Positives = 170/393 (43%), Gaps = 4/393 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L     ++   D  + +F EM     K  I  F+A   +I+      K       F 
Sbjct: 372 YTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNA---LIKMHGNRGKFAEMMKVFD 428

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +   +C  D  ++N L+ +F   G+  +   I++ M++     +  T+  +I + ++ G
Sbjct: 429 DIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCG 488

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+ +++ M E    P  + + +++ ++ + G  + S KV  EM+    +P+   Y 
Sbjct: 489 SFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYS 548

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SL+ +YA   +++      +E+       +  L   ++  ++KS  L      F ++ R 
Sbjct: 549 SLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRR 608

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P  +T + +L ++     V  A ++ N M      P L+TY +L+ + ++ +    +
Sbjct: 609 GISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKS 668

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            +IL E+   G   D +S + V+  Y ++G +  A R    M  S +  +         +
Sbjct: 669 EEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIAT 728

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              ++++  A  ++   ++   K D   Y S++
Sbjct: 729 YAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIV 761



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/356 (20%), Positives = 150/356 (42%), Gaps = 11/356 (3%)

Query: 143 NRWKWGPELETQLDKLQFV---PKMVHITQALKVI--NDSDTSLS-LFRWAKRQSWYVPG 196
           NR K+  E+    D ++     P +V     L V   N  D+ +S +F+  KR + +V  
Sbjct: 416 NRGKFA-EMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKR-AGFVAE 473

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
            + +  L    +    FD  ++++  M+       +   S YN V+  LA+    E S  
Sbjct: 474 RDTFNTLISAYSRCGSFDQAMAVYKSMLEAGV---VPDLSTYNAVLAALARGGLWEQSEK 530

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
              ++ D  CK +  SY+ L+  + N     +     E +  G         + ++   +
Sbjct: 531 VLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNS 590

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           KS  L    + F E++ R   P      +++   G+   +  + ++   M      PS  
Sbjct: 591 KSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLT 650

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y SL+  Y+++     +  +  E+   G +P+   +  +I ++ ++G++  A  IF++M
Sbjct: 651 TYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEM 710

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           + +  +P   TY+  +  +A+      A+ +   M   G +P  +TY +++    K
Sbjct: 711 KDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCK 766


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/499 (22%), Positives = 217/499 (43%), Gaps = 42/499 (8%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + +V  +KWGP+ E  L+ L+       +   L++  + +  +  F+WA ++  +   
Sbjct: 66  RFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHD 125

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN-GISLFSAYNRVIQYLAKADKLEMSY 255
              Y+ L   L E+R +  M     E+V ++  + G  + S    +++ L +A  +  + 
Sbjct: 126 CSTYMALIRCLEEARLYGEMYRTIQEVVRNTYVSVGPVVLS---ELVKALGRAKMVSKAL 182

Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPS 314
             F +     CK  + +YN ++ + + +G   K  E+Y  M  +G+C  D  TY  +I S
Sbjct: 183 SVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISS 242

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K GR D+AI+LF EMK+   +P+  I+ +L+    K G+++ ++ ++ EM+  G  P+
Sbjct: 243 YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPT 302

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI+   KAG+++ A  L+  M   G  P+      ++    K G+L+   ++F 
Sbjct: 303 VYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFN 362

Query: 435 D------------------------------------MERAGFLPTPSTYSCLLEMHASS 458
           +                                    M+  G  P+  TYS L++ +  +
Sbjct: 363 EMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKT 422

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
            +V+ A+ L   M   G  P  + Y +L+  L K K  + A ++  E+K    +V     
Sbjct: 423 NRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVY 482

Query: 519 DVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
            V++ +  K G +  A+     M + G   + +    L    +K  +   A  LL    E
Sbjct: 483 AVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEE 542

Query: 578 SAAKVDLVLYTSVLAHLVR 596
           +    D+  +  +L    R
Sbjct: 543 NGCTADINSHNIILNGFAR 561



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 172/361 (47%), Gaps = 9/361 (2%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           +   + +L LF   KR     P    Y  L   L ++   +    L+  M+ D     + 
Sbjct: 281 VGKVEKALDLFEEMKRAGC-SPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVV 339

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN-VLMTLFLNKGLPYKAFEI 292
                N ++  L K  +LE     F ++    C     SYN V+  LF +K    +    
Sbjct: 340 FL---NNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSW 396

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           ++ M+    S    TY ++I    K+ R++ A+ L +EM E+ F P    + SL++++GK
Sbjct: 397 FDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK 456

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
           A R + + +++ E++      S+ +Y  +I+ + K GKL  A+ L++EM+  G  P+   
Sbjct: 457 AKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYA 516

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  ++    K+G ++ A S+   ME  G     ++++ +L   A +G    A++++ +M 
Sbjct: 517 YNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMK 576

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVD 531
             G++P   TY  LL   A   + + AA+++ EMK  G+  D ++ S +L      G++D
Sbjct: 577 HCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDAV---GNMD 633

Query: 532 H 532
           H
Sbjct: 634 H 634


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 220/499 (44%), Gaps = 42/499 (8%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + +V  +KWGP+ E  L+ L+       +   L++  + +  +  F+WA ++  +   
Sbjct: 66  RFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHD 125

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY-NRVIQYLAKADKLEMSY 255
              Y+ L   L E+R +  M     E+V ++    +S+  A  + +++ L +A  +  + 
Sbjct: 126 CSTYMTLIRCLEEARLYGEMYRTIQEVVRNTY---VSVSPAVLSELVKALGRAKMVSKAL 182

Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPS 314
             F +     CK  + +YN ++ + + +G   K  E+Y  M  +G+C  D  TY  +I S
Sbjct: 183 SVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISS 242

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K GR D+AI+LF EMK+   +P+  I+ +L+    K G+++ ++ ++ EM+  G  P+
Sbjct: 243 YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPT 302

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI+   KAG++D A   + +M   G  P+      ++    K G+++   ++F+
Sbjct: 303 VYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFS 362

Query: 435 DMERAGFLPT----------------------------------PS--TYSCLLEMHASS 458
           +M      PT                                  PS  TYS L++ +  +
Sbjct: 363 EMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKT 422

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
            +V+ A+ L   M   G  P  + Y +L+  L K K  + A ++  E+K    +V     
Sbjct: 423 NRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVY 482

Query: 519 DVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
            V++ +  K G +  A+     M + G   + +    L    +K  +   A  LL    E
Sbjct: 483 AVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEE 542

Query: 578 SAAKVDLVLYTSVLAHLVR 596
           +  + D+  +  +L    R
Sbjct: 543 NGCRADINSHNIILNGFAR 561



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 172/357 (48%), Gaps = 9/357 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           + +L LF   KR     P    Y  L   L ++   D     + +M+ D     +     
Sbjct: 285 EKALDLFEEMKRAGC-SPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFL-- 341

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN-VLMTLFLNKGLPYKAFEIYESM 296
            N ++  L K  ++E     F ++    C     SYN V+  LF +K    +    ++ M
Sbjct: 342 -NNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKM 400

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +    S    TY ++I    K+ R++ A+ L +EM E+ F P    + SL++++GKA R 
Sbjct: 401 KADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRY 460

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + +++ E++      S+ +Y  +I+ + K GKL  A+ L++EM+  G  P+   +  +
Sbjct: 461 EAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL 520

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K+G ++ A S+   ME  G     ++++ +L   A +G    A++++ ++  +G+
Sbjct: 521 MSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGI 580

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
           +P   TY  LL   A   + + AA+++ EMK  G+  D ++ S +L      G+VDH
Sbjct: 581 KPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAV---GNVDH 634


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 220/499 (44%), Gaps = 42/499 (8%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + +V  +KWGP+ E  L+ L+       +   L++  + +  +  F+WA ++  +   
Sbjct: 66  RFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHD 125

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY-NRVIQYLAKADKLEMSY 255
              Y+ L   L E+R +  M     E+V ++    +S+  A  + +++ L +A  +  + 
Sbjct: 126 CSTYMTLIRCLEEARLYGEMYRTIQEVVRNTY---VSVSPAVLSELVKALGRAKMVSKAL 182

Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPS 314
             F +     CK  + +YN ++ + + +G   K  E+Y  M  +G+C  D  TY  +I S
Sbjct: 183 SVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISS 242

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K GR D+AI+LF EMK+   +P+  I+ +L+    K G+++ ++ ++ EM+  G  P+
Sbjct: 243 YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPT 302

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI+   KAG++D A   + +M   G  P+      ++    K G+++   ++F+
Sbjct: 303 VYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFS 362

Query: 435 DMERAGFLPT----------------------------------PS--TYSCLLEMHASS 458
           +M      PT                                  PS  TYS L++ +  +
Sbjct: 363 EMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKT 422

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
            +V+ A+ L   M   G  P  + Y +L+  L K K  + A ++  E+K    +V     
Sbjct: 423 NRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVY 482

Query: 519 DVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
            V++ +  K G +  A+     M + G   + +    L    +K  +   A  LL    E
Sbjct: 483 AVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEE 542

Query: 578 SAAKVDLVLYTSVLAHLVR 596
           +  + D+  +  +L    R
Sbjct: 543 NGCRADINSHNIILNGFAR 561



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 172/357 (48%), Gaps = 9/357 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           + +L LF   KR     P    Y  L   L ++   D     + +M+ D     +     
Sbjct: 285 EKALDLFEEMKRAGC-SPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFL-- 341

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN-VLMTLFLNKGLPYKAFEIYESM 296
            N ++  L K  ++E     F ++    C     SYN V+  LF +K    +    ++ M
Sbjct: 342 -NNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKM 400

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +    S    TY ++I    K+ R++ A+ L +EM E+ F P    + SL++++GKA R 
Sbjct: 401 KADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRY 460

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + +++ E++      S+ +Y  +I+ + K GKL  A+ L++EM+  G  P+   +  +
Sbjct: 461 EAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL 520

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K+G ++ A S+   ME  G     ++++ +L   A +G    A++++ ++  +G+
Sbjct: 521 MSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGI 580

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
           +P   TY  LL   A   + + AA+++ EMK  G+  D ++ S +L      G+VDH
Sbjct: 581 KPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAV---GNVDH 634


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic; AltName: Full=Protein PROTON GRADIENT
            REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 179/363 (49%), Gaps = 5/363 (1%)

Query: 196  GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSY 255
            GD   V +     +  +  G  +LF++   D           YN +I  L +AD +E++ 
Sbjct: 748  GDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQ--PKLPTYNLLIGGLLEADMIEIAQ 805

Query: 256  CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
              F +V  + C  D  +YN L+  +   G   + FE+Y+ M   EC  +  T+ ++I  L
Sbjct: 806  DVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGL 865

Query: 316  AKSGRLDAAIKLFQE-MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K+G +D A+ L+ + M +R+F P+   +  L+D + K+GRL  + +++  M   G RP+
Sbjct: 866  VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPN 925

Query: 375  APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              +Y  LI  + KAG+ D A  L+  M   G RP+   ++++++     G++D  +  F 
Sbjct: 926  CAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFK 985

Query: 435  DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-TSAGLRPGLSTYTALLTLLAKR 493
            +++ +G  P    Y+ ++     S +++ A+ L+N M TS G+ P L TY +L+  L   
Sbjct: 986  ELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIA 1045

Query: 494  KLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
             +V+ A KI  E++  G   +V   + L+  Y   G  +HA    + M + G   N    
Sbjct: 1046 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105

Query: 553  RQL 555
             QL
Sbjct: 1106 EQL 1108



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 139/605 (22%), Positives = 242/605 (40%), Gaps = 67/605 (11%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           + P  + Y  L   L + RD D ++ L  EM     K  +  F+   RV   L +A K+ 
Sbjct: 219 FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRV---LGRAGKIN 275

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +Y   K++ D  C  D  +Y VL+           A E++E M+ G    D  TY  ++
Sbjct: 276 EAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLL 335

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG------------------ 354
              + +  LD+  + + EM++    P    F  LVD++ KAG                  
Sbjct: 336 DRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGIL 395

Query: 355 -----------------RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
                            RLD +++++  M+  G +P+A  Y+  I+ Y K+G   +AL  
Sbjct: 396 PNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET 455

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +++M+  G  PN       + S AK+G+   A  IF  ++  G +P   TY+ +++ ++ 
Sbjct: 456 FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 515

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G++D A+KL + M   G  P +    +L+  L K   VD A K+ + MK M     V  
Sbjct: 516 VGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 575

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            + L+  + K+G +  A+     M   G   N      LF+   KN     A  +L   +
Sbjct: 576 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 635

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVL 636
           +     D+  Y +++  LV+    +        +    +     LC L   P   K  ++
Sbjct: 636 DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLL--PGVVKASLI 693

Query: 637 SFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQ 696
               +      Y   +  A  F   L+  ++    I+ A     V++  +L    I  D 
Sbjct: 694 EDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNA-----VSFSERLVANGICRDG 748

Query: 697 H------IAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIA 750
                  I +S    N+S    L        +F K +   GV P+       PT  ++I 
Sbjct: 749 DSILVPIIRYSCKHNNVSGARTL------FEKFTKDL---GVQPKL------PTYNLLIG 793

Query: 751 QMLSS 755
            +L +
Sbjct: 794 GLLEA 798



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 201/454 (44%), Gaps = 19/454 (4%)

Query: 157 KLQFVPKMVHITQALKVINDSDTSLSLFRWAK---------------RQSWYVPGDECYV 201
           KL+ +  +  + Q   +  D++T L++F+                  R+  +V     Y 
Sbjct: 133 KLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYN 192

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
            L  +L +SR     + ++  M+ +  +  +  +S+   ++  L K   ++      K++
Sbjct: 193 GLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSS---LMVGLGKRRDIDSVMGLLKEM 249

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
                K +  ++ + + +    G   +A+EI + M+   C  D  TY ++I +L  + +L
Sbjct: 250 ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKL 309

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           D A ++F++MK    +P    + +L+D       LD+  + + EM+  GH P    +  L
Sbjct: 310 DCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTIL 369

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           +++  KAG    A    D MR  G  PN   +  +I    +  +LD A+ +F +ME  G 
Sbjct: 370 VDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGV 429

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            PT  TY   ++ +  SG   SA++ +  M + G+ P +    A L  LAK      A +
Sbjct: 430 KPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQ 489

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           I   +K +G   D    +++M  Y K G +D A++ L  M  +G   +  +V  L  +  
Sbjct: 490 IFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLY 549

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           K    + A  +     E   K  +V Y ++LA L
Sbjct: 550 KADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGL 583



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 142/310 (45%), Gaps = 3/310 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY-NVLMTLFLNKGLPYKAFEIYESME 297
           N +++ L    KLE     F  +     K DT +Y  +  +L +  GL    + + +  E
Sbjct: 122 NYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMRE 181

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            G   L+  +Y  +I  L KS     A+++++ M    FRPS   ++SL+  +GK   +D
Sbjct: 182 FGFV-LNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDID 240

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           + M +  EM+  G +P+   +   I    +AGK++ A  +   M   G  P+   +T++I
Sbjct: 241 SVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLI 300

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           ++   + KLD A  +F  M+     P   TY  LL+  + +  +DS  + ++ M   G  
Sbjct: 301 DALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHV 360

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P + T+T L+  L K      A   L  M+  G   ++   + L+   ++   +D AL  
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEL 420

Query: 537 LRFMGSSGIR 546
              M S G++
Sbjct: 421 FGNMESLGVK 430



 Score = 42.7 bits (99), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 3/143 (2%)

Query: 167  ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
            +   L ++   D  L  F+  K +S   P   CY ++ + L +S   +  L LF+EM   
Sbjct: 967  LVDCLCMVGRVDEGLHYFKELK-ESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEM--K 1023

Query: 227  SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
            +S+        YN +I  L  A  +E +   + ++  +  + +  ++N L+  +   G P
Sbjct: 1024 TSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKP 1083

Query: 287  YKAFEIYESMEKGECSLDGSTYE 309
              A+ +Y++M  G  S +  TYE
Sbjct: 1084 EHAYAVYQTMVTGGFSPNTGTYE 1106


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 180/378 (47%), Gaps = 20/378 (5%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           F+    +  EM+    K  +   S Y +VI +L +A K+E S+  F+++  +    D  +
Sbjct: 433 FEKAFQILKEMMR---KGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYT 489

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y +L+  F   GL  +A   ++ M    CS +  TY  ++ +  KS +L  A  +F  M 
Sbjct: 490 YTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMV 549

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG----------------CGHRPSAP 376
           +    P+   +++L+D + KAG +  + +VY ++ G                C   P+  
Sbjct: 550 DAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVV 609

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +LI+   KA K+  A  L D M  AG  PN  ++  +I+   K GK+D A  +F  M
Sbjct: 610 TYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRM 669

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            + G+LP+  TY+ L++     G++D AMK+ + M +    P + TYTA++  L+K   +
Sbjct: 670 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEI 729

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           + A  +L  M+  G S +V     L+  + K G  D +L+  + M S G   N    R L
Sbjct: 730 EKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVL 789

Query: 556 FESCMKNALYESAKPLLE 573
              C    L + A  LL+
Sbjct: 790 INHCCAAGLLDEAHLLLD 807



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 189/397 (47%), Gaps = 23/397 (5%)

Query: 130 LNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS---DTSLSLFRW 186
           +N +  ++ +  V +++   ++  ++ +  FVP     T+ +  +  +   + S  LF+ 
Sbjct: 418 VNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQE 477

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
            KR +   P    Y +L D   ++   +   S FDEM        +  ++A   ++    
Sbjct: 478 MKR-AGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTA---LLHAYL 533

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM---------- 296
           K+ +L  ++  F +++D+ C  +  +Y+ L+      G   KA E+YE +          
Sbjct: 534 KSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESD 593

Query: 297 ----EKGECSLDGS--TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
                   C++  +  TY  +I  L K+ ++  A +L   M      P+  ++ +L+D  
Sbjct: 594 FYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGF 653

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K G++D + +V++ M  CG+ PS   Y SLI+   K G+LD A+++  EM      PN 
Sbjct: 654 CKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNV 713

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +T +I+  +K G+++ A+++ + ME  G  P   TY+ L++    +G+ D+++KL+  
Sbjct: 714 VTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQ 773

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           M S G  P   TY  L+       L+D A  +L EMK
Sbjct: 774 MNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMK 810



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 161/347 (46%), Gaps = 21/347 (6%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKL 251
           +VP    Y  +   L +++  +    LF EM     + G++     Y  +I    KA  +
Sbjct: 448 FVPDTSTYTKVITFLCQAKKVEKSFLLFQEM----KRAGVNPDVYTYTILIDSFCKAGLI 503

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E +   F ++    C  +  +Y  L+  +L      +A +I+  M    C  +  TY  +
Sbjct: 504 EQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSAL 563

Query: 312 IPSLAKSGRLDAAIKLFQEM------KERNF----------RPSFNIFASLVDSMGKAGR 355
           I  L K+G +  A ++++++       E +F           P+   + +L+D + KA +
Sbjct: 564 IDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQK 623

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  + ++   M   G  P+  +Y +LI+ + K GK+D A  ++  M   G+ P+   +T 
Sbjct: 624 VSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTS 683

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+   K G+LD+AM + ++M      P   TY+ +++  +  G+++ A+ L + M   G
Sbjct: 684 LIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKG 743

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             P + TYTAL+  L K    D + K+  +M + G + +     VL+
Sbjct: 744 CSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLI 790



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/498 (21%), Positives = 206/498 (41%), Gaps = 39/498 (7%)

Query: 142 VNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAK------RQSWYVP 195
           V RW    +    L+K  F    V  TQ +  + ++    SLF  A       R +  +P
Sbjct: 252 VGRW---ADALNMLEKEDFNLDTVLCTQMISGLMEA----SLFNEAMSFLHRMRCNSCIP 304

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSY 255
               Y  L     + + F     + + M+ +      SLF   N ++     A     +Y
Sbjct: 305 NVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLF---NSLVHGYCNAGDYAYAY 361

Query: 256 CCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAF-----EIYESMEKGECSLDGSTYE 309
             F ++          +YN+ + ++   + LP         ++YE M    C L+     
Sbjct: 362 KLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTA 421

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
                L   G+ + A ++ +EM  + F P  + +  ++  + +A +++ S  ++ EM+  
Sbjct: 422 NFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRA 481

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P    Y  LI+S+ KAG ++ A   +DEMR  G  PN   +T ++ ++ KS +L  A
Sbjct: 482 GVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQA 541

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT----------------S 473
             IF  M  A   P   TYS L++    +G++  A ++Y  +                 +
Sbjct: 542 HDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDT 601

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDH 532
             + P + TY AL+  L K + V  A ++L  M   G   +    D L+  + K G +D+
Sbjct: 602 CTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDN 661

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A      M   G   +      L +   K+   + A  +L   +  +   ++V YT+++ 
Sbjct: 662 AQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMID 721

Query: 593 HLVRCQDEQNERHLMAIL 610
            L +  + +   +L++++
Sbjct: 722 GLSKVGEIEKALNLLSLM 739



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 152/354 (42%), Gaps = 42/354 (11%)

Query: 172 KVINDSDTSLSLFRWAKRQSWYV-PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK- 229
           K+I  S    S F +    +  + P    Y  L D L +++       L D M+    + 
Sbjct: 582 KLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEP 641

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
           N I     Y+ +I    K  K++ +   F ++          +Y  L+      G    A
Sbjct: 642 NQI----VYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLA 697

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            ++   M    C+ +  TY  MI  L+K G ++ A+ L   M+E+   P+   + +L+D 
Sbjct: 698 MKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDG 757

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR------- 402
           +GK G+ D S+K++ +M   G  P+   Y  LI     AG LD A  L DEM+       
Sbjct: 758 LGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKH 817

Query: 403 -------IAGFRPNF----GL---------------FTMIIESHAKSGKLDIAMSIFTDM 436
                  + GF   F    GL               + M+I+S +K+G+L+ A+ +  ++
Sbjct: 818 LQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKEL 877

Query: 437 -ERAGFLPTPST--YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            E +  L   ST  Y+ L++    + QV+ A  LY  MT  G+ P L  + +L+
Sbjct: 878 VEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLV 931



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 135/289 (46%), Gaps = 2/289 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I  L KA K+  ++     +L + C+ +   Y+ L+  F   G    A E++  M 
Sbjct: 611 YGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMT 670

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K        TY  +I  + K GRLD A+K+  EM   +  P+   + +++D + K G ++
Sbjct: 671 KCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIE 730

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +   M+  G  P+   Y +LI+   K GK D +L+L+ +M   G  PN+  + ++I
Sbjct: 731 KALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLI 790

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                +G LD A  +  +M+   +      Y C ++    S +  +++ L   M S    
Sbjct: 791 NHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQ--GFSKKFIASLGLLEEMESHETV 848

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK 526
           P    Y  L+   +K   ++ A ++  E+  +  S++++++ +    I+
Sbjct: 849 PIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQ 897



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/458 (20%), Positives = 180/458 (39%), Gaps = 42/458 (9%)

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVL---NESRDFDGML------------SLFDEMVHDS 227
            F WA+RQ  Y     CY  L ++L   + +R  + +L             L + +V   
Sbjct: 120 FFLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLLNVLVRRC 179

Query: 228 SKNGI-----------------SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
            ++G+                      YN ++Q LA A ++EM +   K++  S   +D 
Sbjct: 180 CRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDR 239

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            +           G    A  +   +EK + +LD      MI  L ++   + A+     
Sbjct: 240 STIGYFAQALCKVGRWADALNM---LEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHR 296

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M+  +  P+   + +L+    K  +     ++   M   G  P+  ++ SL+  Y  AG 
Sbjct: 297 MRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGD 356

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMII------ESHAKSGKLDIAMSIFTDMERAGFLPT 444
              A +L++ M   G  P +  + + I      E    +  LD+   ++ +M  A  +  
Sbjct: 357 YAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLN 416

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
               +         G+ + A ++   M   G  P  STYT ++T L + K V+ +  +  
Sbjct: 417 KVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQ 476

Query: 505 EMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
           EMK  G + DV    +L+  + K G ++ A  W   M S G   N      L  + +K+ 
Sbjct: 477 EMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSK 536

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
               A  +    V++A   + V Y++++  L +  + Q
Sbjct: 537 QLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQ 574



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 119/276 (43%), Gaps = 39/276 (14%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y+P    Y  L D + +    D  + +  EM++DS    +  ++A   +I  L+K  ++E
Sbjct: 674 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTA---MIDGLSKVGEIE 730

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +      + +  C  +  +Y  L+      G    + ++++ M    C+ +  TY ++I
Sbjct: 731 KALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLI 790

Query: 313 PSLAKSGRLD---------------------------------AAIKLFQEMKERNFRPS 339
                +G LD                                 A++ L +EM+     P 
Sbjct: 791 NHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPI 850

Query: 340 FNIFASLVDSMGKAGRLDTSMKVY---MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
             ++  L+DS  KAGRL+T+++++   +E+    +  S  MY SLI++   A +++ A  
Sbjct: 851 APVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFT 910

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           L+ EM   G  P+  +F  +++   +  K D A+ +
Sbjct: 911 LYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 172/358 (48%), Gaps = 2/358 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-AFEIYE 294
           SAY  +I  L++A +   +   F++++ +       +YNV++ ++    +P+K    + +
Sbjct: 177 SAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLALVD 236

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           SM K    LD  TY  +I    +      A K+F EM+   F P      SL+D  GKA 
Sbjct: 237 SMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKAR 296

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R D ++ V  EM+  G  PS   Y SLI SY K G L+ A +L +EM + G  P+   +T
Sbjct: 297 RYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYT 356

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++    ++GK+D A+  + +M R G  P   TY+ L+++H   G+    M +++ + SA
Sbjct: 357 TLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSA 416

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHA 533
           G  P + T+  LL +  +  L    + +  EMK  GY  +      ++  Y + G  D A
Sbjct: 417 GFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQA 476

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +   + M  +GI  +      +  +  +   +E A+ L        ++ D + Y+S+L
Sbjct: 477 MEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLL 534



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 182/362 (50%), Gaps = 9/362 (2%)

Query: 216 MLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           +L+L D M     K+GI L    YN +I    +    + +   F ++  +  + D  + N
Sbjct: 231 VLALVDSM----RKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLN 286

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            L+ ++       +A  + + ME+G C     TY  +I S  K G L+ A +L +EM+ +
Sbjct: 287 SLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVK 346

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
              P    + +LV  + +AG++D ++  Y EM   G +P+   Y +LI+ +   GK    
Sbjct: 347 GIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEM 406

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS-IFTDMERAGFLPTPSTYSCLLE 453
           + ++DE+R AGF P+   +  ++    ++G LD  +S +F +M+++G++P   TY  L+ 
Sbjct: 407 MIVFDEIRSAGFVPDVVTWNTLLAVFGQNG-LDTEVSGVFKEMKKSGYVPERDTYVSLIS 465

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            ++  G  D AM++Y  M  AG+ P +STY A+L+ LA+    + A K+  EM+ +    
Sbjct: 466 SYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRP 525

Query: 514 D-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK-NALYESAKPL 571
           D +S S +L  Y     +D        + +  I ++N +V+ L     K N L ++ K  
Sbjct: 526 DELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAF 585

Query: 572 LE 573
           LE
Sbjct: 586 LE 587



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 165/389 (42%), Gaps = 36/389 (9%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++    KA + + +    K++    C     +YN L++ ++  GL  +A ++ E ME 
Sbjct: 286 NSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEV 345

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR--- 355
                D  TY  ++  L ++G++DAAI  + EM     +P+   + +L+   G  G+   
Sbjct: 346 KGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPE 405

Query: 356 -------------------------------LDTSMK-VYMEMQGCGHRPSAPMYVSLIE 383
                                          LDT +  V+ EM+  G+ P    YVSLI 
Sbjct: 406 MMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLIS 465

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           SY++ G  D A+ ++  M  AG  P+   +  ++ + A+ G+ + A  +F +ME     P
Sbjct: 466 SYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRP 525

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              +YS LL  +A++ ++D    L   + +  +         L+ + +K   +    K  
Sbjct: 526 DELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAF 585

Query: 504 LEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
           LE++    S+D++  + ++ +Y K+G V      L  M  S I  +      L     + 
Sbjct: 586 LELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRL 645

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVL 591
              E  + +L     S A+ D   Y +++
Sbjct: 646 GDCEKCENILTEIKSSRARPDRYSYNTMI 674



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/393 (20%), Positives = 174/393 (44%), Gaps = 4/393 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L+ +   D  +  ++EM+ +  K  +     YN +I+      K       F 
Sbjct: 355 YTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLC---TYNALIKLHGVRGKFPEMMIVFD 411

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++  +    D  ++N L+ +F   GL  +   +++ M+K     +  TY  +I S ++ G
Sbjct: 412 EIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCG 471

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+++++ M E    P  + + +++ ++ + GR + + K++ EM+    RP    Y 
Sbjct: 472 LFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYS 531

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SL+ +YA A KLD    L +++       + GL   ++  ++K   L      F ++ R 
Sbjct: 532 SLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRR 591

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
                 +  + ++ ++  +G V    ++ + M  + +    +TY +L+ + ++    +  
Sbjct: 592 RCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKC 651

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             IL E+K+     D  S + ++  Y + G +  A R    M  SG+  +        +S
Sbjct: 652 ENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKS 711

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            + N+++E A  L+   V    K +   Y ++L
Sbjct: 712 YVANSMFEEAIDLVRYMVTHGCKPNERTYNTIL 744



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 176/420 (41%), Gaps = 50/420 (11%)

Query: 115 GFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQ---FVPKMVHITQAL 171
           G  + ++  G K      +A+ K+  V  ++   PE+    D+++   FVP +V     L
Sbjct: 373 GTYNEMLRNGCKPNLCTYNALIKLHGVRGKF---PEMMIVFDEIRSAGFVPDVVTWNTLL 429

Query: 172 KVI--NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
            V   N  DT +S      ++S YVP  + YV L    +    FD  + ++  M+     
Sbjct: 430 AVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIH 489

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN------- 282
             IS    YN V+  LA+  + E +   F ++ + D + D  SY+ L+  + N       
Sbjct: 490 PDIS---TYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKM 546

Query: 283 KGLPYKAF-EIYES---------------------------MEKGECSLDGSTYELMIPS 314
           K L    + E  ES                           + +  CSLD +    MI  
Sbjct: 547 KSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISI 606

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K+G +    ++   MKE +   S   + SL+    + G  +    +  E++    RP 
Sbjct: 607 YGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPD 666

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y ++I +Y + G++  A RL+ EM+ +G  P+   + + ++S+  +   + A+ +  
Sbjct: 667 RYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVR 726

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA--LLTLLAK 492
            M   G  P   TY+ +L+ + S G++       +++    L PG+S      LL LLAK
Sbjct: 727 YMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLPE--LHPGISKREQQRLLELLAK 784


>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
          Length = 762

 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 125/504 (24%), Positives = 218/504 (43%), Gaps = 20/504 (3%)

Query: 91  EEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIK---KPFLNASAVAKIVEVVNRWKW 147
           +E++  + S   +YTG G +S           GG +   +   +  +V +    + + KW
Sbjct: 257 DEVQTQNLSAPAMYTGSGHKSQALAGTIKSHGGGPQSNLRSLKSLRSVEQYYHTLQQMKW 316

Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVL 207
            P     LD L          Q LK+++D   +L  F+W KRQ  +      Y  +  +L
Sbjct: 317 VPMTGHVLDNLHCKIDAFQANQVLKLLHDHTIALGFFQWLKRQPGFKHDGHSYTTMIGIL 376

Query: 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK 267
            ++R F  M  L DEM   +S +       YNR+I    +A+ L  +   F+++  +  +
Sbjct: 377 GQARQFGTMRKLLDEM---NSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYE 433

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            D  +Y  L+ +    G    A ++Y  M++   S D  TY  M+  L K G L AA KL
Sbjct: 434 PDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKL 493

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F EM E    P+   +  ++    KA   +  +K+Y +MQ  G RP    Y  ++E    
Sbjct: 494 FCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGH 553

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            G LD A  ++ EMR   + P+  ++ ++++   K+G +D A+  +  M + G  P   T
Sbjct: 554 CGHLDEAEAVFIEMR-HDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPT 612

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
            + LL       +   A  +  +M + GL P L TYT LL+        +  A++ L  +
Sbjct: 613 CNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSC-----CTEAQAQMGLCCQ 667

Query: 508 TMGYSVDVSASDVLMVYIKDGSV------DHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
            M  ++    + + ++Y+ D         DH   +L  M S    +   ++  + +   K
Sbjct: 668 LM--AITGHPAHMFLLYLPDAEPGGQNVRDHTRYFLDMMHSEDRESKRGLMDAVIDFLHK 725

Query: 562 NALYESAKPLLETYVESAAKVDLV 585
           + L E A  + E   +     D V
Sbjct: 726 SGLKEEAGFIWEVAAQRNVYPDSV 749



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 206/440 (46%), Gaps = 11/440 (2%)

Query: 261 VLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           VLD+  CKID    N ++ L  +  +    F+  +   +     DG +Y  MI  L ++ 
Sbjct: 323 VLDNLHCKIDAFQANQVLKLLHDHTIALGFFQWLK--RQPGFKHDGHSYTTMIGILGQAR 380

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +     KL  EM   + +P+   +  ++ + G+A  L  ++KV+ EMQ  G+ P    Y 
Sbjct: 381 QFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYC 440

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI+ +AK G L+ A+ L+  M+  G  P+   ++ ++    K G L  A  +F +M   
Sbjct: 441 TLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVEN 500

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   TY+ ++ + A +   ++ +KLY  M  AG RP   TY+ ++ +L     +D A
Sbjct: 501 GCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEA 560

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             + +EM+   ++ D     +L+ ++ K G+VD AL W   M   G++ N      L  +
Sbjct: 561 EAVFIEMR-HDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSA 619

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA-TKHKA 617
            +K   ++ A  +L+  +       L  YT +L+    C + Q +  L   L A T H A
Sbjct: 620 FLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLS---CCTEAQAQMGLCCQLMAITGHPA 676

Query: 618 HAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARC 677
           H FL  L    E   Q V    R F   +  E  E + R  ++ ++++L   G    A  
Sbjct: 677 HMFLLYLPDA-EPGGQNVRDHTRYFLDMMHSEDRE-SKRGLMDAVIDFLHKSGLKEEAGF 734

Query: 678 VWKVAYENKLFPKAIVFDQH 697
           +W+VA +  ++P ++    H
Sbjct: 735 IWEVAAQRNVYPDSVREKTH 754


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/521 (22%), Positives = 220/521 (42%), Gaps = 41/521 (7%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + ++  +KWGP+ E  L+ L+    +  + + LK+  +    +  F+WA ++  +   
Sbjct: 65  RFIRILKIFKWGPDAEKALEVLKLKLDIRLVREVLKIDVEVHVKIQFFKWAGKKRNFEHD 124

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
              Y+ L   L+E+R    +     +MV      G S  S    +++ L +   +  +  
Sbjct: 125 STTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELS---EIVKILGRVKMVNKALS 181

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSL 315
            F +V    C+    +YN ++ + + +G   K  E+Y  M  +G C  D  TY  +I + 
Sbjct: 182 IFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAF 241

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFAS------------------------------ 345
            K  R D+A++LF EMKE   +P+  I+ +                              
Sbjct: 242 GKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTV 301

Query: 346 -----LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
                L+  +GK+GR++ +  VY  M   G +P   +  +LI    ++ +L  A+ L++E
Sbjct: 302 YTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEE 361

Query: 401 MRIAGFRPNFGLFTMIIES-HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           MR+    PN   +  II+S          A S    M++ G +P+  TYS L++    + 
Sbjct: 362 MRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTN 421

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           +V+ A+ L   M   G  P  + Y +L+  L K K  + A ++  E+K    S  V    
Sbjct: 422 RVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYA 481

Query: 520 VLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
           V++ +  K G  + A+     M   G   + +    L    ++  + + A  L  T  E+
Sbjct: 482 VMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEEN 541

Query: 579 AAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHA 619
               D+  +  +L  L R    +    + A + ++  K  A
Sbjct: 542 GCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDA 582



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 170/329 (51%), Gaps = 6/329 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R    VP    Y  L   L +S   +    ++  M+ D  K  + L    N +I  L ++
Sbjct: 293 RMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLM---NNLINILGRS 349

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEIYESMEKGECSLDGST 307
           D+L+ +   F+++   +C  +  +YN ++ +LF +K  P +A    E M+K        T
Sbjct: 350 DRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFT 409

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM- 366
           Y ++I    K+ R++ A+ L +EM E+ F P    + SL++S+GKA R + + +++ E+ 
Sbjct: 410 YSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELK 469

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           + CG   S  +Y  +I+ + K G+ + A+ L++EM+  G  P+   +  +I    ++  +
Sbjct: 470 ENCGS-SSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMM 528

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           D A S+F  ME  G  P  ++++ +L   A +G    AM+++  M S+ ++P   +Y  +
Sbjct: 529 DEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTV 588

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           L  L++  L + A K++ EM + G+  D+
Sbjct: 589 LGCLSRAGLFEEATKLMKEMNSKGFEYDL 617



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 177/397 (44%), Gaps = 6/397 (1%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +  A   +N  D+++ LF   K ++   P  + Y  L  +  +    +  L+L  EM   
Sbjct: 237 LISAFGKLNRDDSAVRLFDEMK-ENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEM--- 292

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
             +  +     Y  +I+ L K+ ++E +Y  +K +L   CK D    N L+ +       
Sbjct: 293 RMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRL 352

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSL-AKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
            +A E++E M    C+ +  TY  +I SL         A    + MK+    PS   ++ 
Sbjct: 353 KEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSI 412

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+D   K  R++ ++ +  EM   G  P    Y SLI S  KA + + A  L+ E++   
Sbjct: 413 LIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENC 472

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
              +  ++ ++I+   K G+ + AM +F +M++ G +P    Y+ L+     +  +D A 
Sbjct: 473 GSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAF 532

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVY 524
            L+ +M   G  P ++++  +L  LA+      A ++  +MK+     D VS + VL   
Sbjct: 533 SLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCL 592

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
            + G  + A + ++ M S G   +      + E+  K
Sbjct: 593 SRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGK 629


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 214/467 (45%), Gaps = 7/467 (1%)

Query: 138 IVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGD 197
           I++ + ++K+ P        +  V  M+     L   N  D ++ LF   + Q+  VP  
Sbjct: 32  IIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVELFEQLE-QNRKVPCA 90

Query: 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCC 257
             Y  +      +  FD    L +      +K  I    AYN ++  L K  ++E +   
Sbjct: 91  YAYNTMIMGYGSAGKFDEAYGLLE---RQKAKGSIPSVIAYNCILTCLGKKRRVEEALRI 147

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           F++ +  D   +  +YN+L+ +   +G    A EI + ME+     +  T  +MI  L K
Sbjct: 148 FEE-MKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCK 206

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           + +L+ A  +F+ M ++   P+   F+SL+D +GK GR+D +  +Y +M  CGH P A +
Sbjct: 207 AQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIV 266

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y SLI S+ K G+ +   +++ EM   G  P+  L    ++   K+G+ +   ++F ++ 
Sbjct: 267 YTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREIN 326

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             GF+P   +YS L+     +G  +   +L+ +M   G       Y A++    K   V+
Sbjct: 327 AHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVN 386

Query: 498 VAAKILLEMKTMGY-SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A ++L EMK  G+    V+   V+    K   +D A        S+GI+ N  +   L 
Sbjct: 387 KAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLI 446

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
           +   K    + A  ++E  ++     ++  +  +L  LV+  +E NE
Sbjct: 447 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK-AEEINE 492



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 161/331 (48%), Gaps = 5/331 (1%)

Query: 193 YVPGDECYVMLF-DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251
           +VPG   Y  L        R  DG   ++ EMVH      ++L + Y   +  + KA + 
Sbjct: 260 HVPGAIVYTSLIRSFFKCGRKEDGH-KIYKEMVHTGCSPDLTLINTY---MDCVFKAGET 315

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E     F+++       D +SY++L+   +  GL  + +E++ +M++  C LD   Y  +
Sbjct: 316 EKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAV 375

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I    KSG+++ A +L +EMK +   P+   + S++D + K  RLD +  ++ E +  G 
Sbjct: 376 IDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGI 435

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           + +  +Y SLI+ + K G++D A  + +E+   G  PN   +  ++++  K+ +++ A+ 
Sbjct: 436 KLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALI 495

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
            F  M+     P   TYS L+       + + A   +  M   GL+P   TYT +++ LA
Sbjct: 496 CFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLA 555

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           K   +  A+ +    K  G   D ++ + ++
Sbjct: 556 KAGNILEASGLFSRFKANGGIPDSASYNAMI 586



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I  L KA     +Y  F  + +  C +DT +YN ++  F   G   KA+++ E M
Sbjct: 336 SYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEM 395

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +         TY  +I  LAK  RLD A  LF+E K    + +  +++SL+D  GK GR+
Sbjct: 396 KVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRI 455

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  +  E+   G  P+   +  L+++  KA +++ AL  +  M+     PN   ++++
Sbjct: 456 DEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSIL 515

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    +  K + A   + +M++ G  P   TY+ ++   A +G +  A  L++   + G 
Sbjct: 516 INGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGG 575

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            P  ++Y A++  L+       A  +  E +  G ++      VL+
Sbjct: 576 IPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLL 621



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 170/385 (44%), Gaps = 32/385 (8%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG----------KAGRLDTSM 360
           ++ +  KS +L  A  + Q M++  FRP+F+ +  L+  +G          KA RLD ++
Sbjct: 16  LVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAV 75

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +++ +++     P A  Y ++I  Y  AGK D A  L +  +  G  P+   +  I+   
Sbjct: 76  ELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCL 135

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K  +++ A+ IF +M+R   +P   TY+ L++M    G++++A+++ + M  AGL P +
Sbjct: 136 GKKRRVEEALRIFEEMKRDA-VPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNV 194

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRF 539
            T   ++  L K + ++ A  I   M     + + V+ S ++    K G VD A      
Sbjct: 195 LTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEK 254

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           M   G      +   L  S  K    E    + +  V +    DL L  + +  + +  +
Sbjct: 255 MLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGE 314

Query: 600 EQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVL--SFVREFFHGIDYEL-----EE 652
            +  R L   ++     AH F+      P+ R   +L    V+       YEL     E+
Sbjct: 315 TEKGRALFREIN-----AHGFI------PDARSYSILIHGLVKAGLANETYELFYAMKEQ 363

Query: 653 GAA--RYFVNVLLNYLVLMGQINRA 675
           G     +  N +++     G++N+A
Sbjct: 364 GCVLDTHAYNAVIDGFCKSGKVNKA 388



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 12/239 (5%)

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA-------- 421
           G  PS+ + + L+ +  K+ KL  A  +   MR   FRP F  +T++I            
Sbjct: 5   GFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWV 64

Query: 422 --KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K+ +LD A+ +F  +E+   +P    Y+ ++  + S+G+ D A  L     + G  P 
Sbjct: 65  LCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPS 124

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLR 538
           +  Y  +LT L K++ V+ A +I  EMK      +V   ++L+ +  ++G ++ AL    
Sbjct: 125 VIAYNCILTCLGKKRRVEEALRIFEEMKRDAVP-NVPTYNILIDMLCREGKLNAALEIRD 183

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
            M  +G+  N   V  + +   K    E A  + E   +     + V ++S++  L +C
Sbjct: 184 DMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKC 242


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 212/459 (46%), Gaps = 13/459 (2%)

Query: 145 WKWGPELETQLDKLQFVPKMVHITQALKVI---NDSDTSLSLFRWAKRQSWYVPGDECYV 201
           WK+  E+++       +P  V  T  + V+   N  D ++ LF   + Q+  VP    Y 
Sbjct: 285 WKFFHEMKSH----GLMPDDVTYTSMIGVLCKANRLDEAVELFEQLE-QNRKVPCAYAYN 339

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
            +      +  FD    L +      +K  I    AYN ++  L K  ++E +   F++ 
Sbjct: 340 TMIMGYGSAGKFDEAYGLLE---RQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEE- 395

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           +  D   +  +YN+L+ +   +G    A EI + ME+     +  T  +MI  L K+ +L
Sbjct: 396 MKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKL 455

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           + A  +F+ M ++   P+   F+SL+D +GK GR+D +  +Y +M  CGH P A +Y SL
Sbjct: 456 EEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSL 515

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I S+ K G+ +   +++ EM   G  P+  L    ++   K+G+ +   ++F ++   GF
Sbjct: 516 IRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGF 575

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +P   +YS L+     +G  +   +L+ +M   G       Y A++    K   V+ A +
Sbjct: 576 IPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQ 635

Query: 502 ILLEMKTMGY-SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +L EMK  G+    V+   V+    K   +D A        S+GI+ N  +   L +   
Sbjct: 636 LLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFG 695

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           K    + A  ++E  ++     ++  +  +L  LV+ ++
Sbjct: 696 KVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 734



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 121/539 (22%), Positives = 235/539 (43%), Gaps = 27/539 (5%)

Query: 66  FRKPNYVRSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGI 125
           F K  Y+ S C   S     CN  +E        G V+++  G+    P  ++     GI
Sbjct: 14  FPKGCYISSICKKFS---SSCNGPSEV------DGKVVFSADGVDKKIPRNNE-----GI 59

Query: 126 KKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFR 185
           +K       V  +  ++    WGP LE  L  L   P    +   LK + D++T+++ F+
Sbjct: 60  RK------GVDDVCCILESGPWGPTLENSLSALGEKPLPELVIGVLKRLKDANTAVNYFQ 113

Query: 186 WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN-RVIQY 244
           WA++Q+  V   E Y  L  V+  + +FD +  + +EM    S +G    S  +  ++  
Sbjct: 114 WAEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEM----SLSGFGPSSNISIELVAN 169

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
             K+ KL  ++   + +     +    +Y +L+        P     ++  M++    ++
Sbjct: 170 CVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVN 229

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
              +  +I   A+ GR+DAA+ L  EMK  +      ++   +D  GKAG++D S K + 
Sbjct: 230 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFH 289

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           EM+  G  P    Y S+I    KA +LD A+ L++++      P    +  +I  +  +G
Sbjct: 290 EMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAG 349

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           K D A  +    +  G +P+   Y+C+L       +V+ A++++  M    + P + TY 
Sbjct: 350 KFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYN 408

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSS 543
            L+ +L +   ++ A +I  +M+  G   +V   ++++  + K   ++ A      M   
Sbjct: 409 ILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK 468

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
               N      L +   K    + A  L E  ++       ++YTS++    +C  +++
Sbjct: 469 VCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKED 527



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 161/331 (48%), Gaps = 5/331 (1%)

Query: 193 YVPGDECYVMLF-DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251
           +VPG   Y  L        R  DG   ++ EMVH      ++L + Y   +  + KA + 
Sbjct: 505 HVPGAIVYTSLIRSFFKCGRKEDGH-KIYKEMVHTGCSPDLTLINTY---MDCVFKAGET 560

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E     F+++       D +SY++L+   +  GL  + +E++ +M++  C LD   Y  +
Sbjct: 561 EKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAV 620

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I    KSG+++ A +L +EMK +   P+   + S++D + K  RLD +  ++ E +  G 
Sbjct: 621 IDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGI 680

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           + +  +Y SLI+ + K G++D A  + +E+   G  PN   +  ++++  K+ +++ A+ 
Sbjct: 681 KLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALI 740

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
            F  M+     P   TYS L+       + + A   +  M   GL+P   TYT +++ LA
Sbjct: 741 CFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLA 800

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           K   +  A+ +    K  G   D ++ + ++
Sbjct: 801 KAGNILEASGLFSRFKANGGIPDSASYNAMI 831



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I  L KA     +Y  F  + +  C +DT +YN ++  F   G   KA+++ E M
Sbjct: 581 SYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEM 640

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +         TY  +I  LAK  RLD A  LF+E K    + +  +++SL+D  GK GR+
Sbjct: 641 KVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRI 700

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  +  E+   G  P+   +  L+++  KA +++ AL  +  M+     PN   ++++
Sbjct: 701 DEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSIL 760

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    +  K + A   + +M++ G  P   TY+ ++   A +G +  A  L++   + G 
Sbjct: 761 INGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGG 820

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            P  ++Y A++  L+       A  +  E +  G ++      VL+
Sbjct: 821 IPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLL 866


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 157/676 (23%), Positives = 270/676 (39%), Gaps = 114/676 (16%)

Query: 141 VVNRWKWGPELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSL 181
            V + K+  ++ET ++KL  +P    I + L V                     D   SL
Sbjct: 71  TVEKGKYSYDVETLINKLSSLPPRGSIARCLDVFKNKLSLNDFALVFKEFAQRGDWQRSL 130

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM----VHDSSKNGISLFSA 237
            LF++ +RQ W  P +  Y ++  VL      +    +FDEM    V  S  +  +L +A
Sbjct: 131 RLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINA 190

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF-EIYESM 296
           Y R  QY +  + L+       ++          +YN ++      GL ++    ++  M
Sbjct: 191 YGRNGQYKSSLELLD-------RMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQM 243

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  ++ + A+ G  D A  +F+ M E    P    ++ LV++ GK  RL
Sbjct: 244 RHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRL 303

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +   ++  EM+  G  P    Y  L+E++A++G +  A+ ++ +M+ AG  PN   ++++
Sbjct: 304 EKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSIL 363

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  + + G+ D    +F +M+ +   P  +TY+ L+ +    G     + L++ M    +
Sbjct: 364 LNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENV 423

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-------YSVDVSA------------ 517
            P + TY  L+    K  L + A KILL M   G       Y+  + A            
Sbjct: 424 EPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALV 483

Query: 518 -----------------SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
                            + ++ ++ K G    +   L  MG SG+  N      + E+  
Sbjct: 484 AFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFR 543

Query: 561 KNALYESAKPLLETYVE-SAAKVD-------LVLYTSVLAHLVRCQDEQ-NERHLMAILS 611
           +   +E A   ++ YVE   A+ D        VL     A LV   +EQ  E   + IL 
Sbjct: 544 QGGQFEEA---IKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILP 600

Query: 612 ATK---------------HKAHAFLCGLFTGPEQRKQPVLSFVREFFHG----------I 646
           +                   AH  L  +FT    R   +   + +   G          +
Sbjct: 601 SVMCYCMMLAVYAKADRWDDAHQLLDEMFT---NRVSNIHQVIGQMIRGDYDDDSNWQMV 657

Query: 647 DYELE----EGAAR--YFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAW 700
           +Y  E    EG +    F N LL  L  +GQ  RA  V   A +  LFP+ +     + W
Sbjct: 658 EYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNEATKRGLFPE-LFRKNKLVW 716

Query: 701 SLDVRNLSVGAALIAV 716
           S+DV  +  GAA  A+
Sbjct: 717 SVDVHRMWEGAACTAI 732



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/474 (21%), Positives = 203/474 (42%), Gaps = 23/474 (4%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y  L +   +    + +  L  EM    S       ++YN +++  A++  ++ 
Sbjct: 284 LPDITTYSYLVETFGKLNRLEKVSELLKEM---ESGGSFPDITSYNVLLEAHAQSGSIKE 340

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F+++  + C  +  +Y++L+ L+   G      +++  M+      + +TY ++I 
Sbjct: 341 AMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILIN 400

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              + G     + LF +M E N  P+   +  L+ + GK G  + + K+ + M   G  P
Sbjct: 401 VFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVP 460

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           S+  Y  +IE+Y +A   + AL  ++ M   G +P    +  +I+  AK G    + +I 
Sbjct: 461 SSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAIL 520

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M ++G      T++ ++E     GQ + A+K Y  M  A   P   T  A+L++    
Sbjct: 521 LKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFA 580

Query: 494 KLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
            LV+ + +   E+K +G    V     +L VY K    D A + L  M ++ +   + ++
Sbjct: 581 GLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVI 640

Query: 553 RQLFESCM-KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
            Q+       ++ ++  + + E        + +  Y ++L  L      Q ER    +  
Sbjct: 641 GQMIRGDYDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLG--QKERATRVLNE 698

Query: 612 ATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGID-YELEEGAARYFVNVLLN 664
           ATK        GLF        P L    +    +D + + EGAA   ++V LN
Sbjct: 699 ATKR-------GLF--------PELFRKNKLVWSVDVHRMWEGAACTAISVWLN 737


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 220/485 (45%), Gaps = 12/485 (2%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI--DTQSYNVLMTLFLNKGLPYKAFEI 292
           F  ++ +   L + D  E +  CF K+    C++   T+S N L+  F   G        
Sbjct: 63  FGVFDALFSVLIEEDMFEEALQCFSKM--KRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           ++ M          TY +MI  + K G ++AA  LF+EMK R   P    + S++D  GK
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            GRLD ++  + EM+     P    Y +LI  + K GKL   L  + EM+ +G +PN   
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVS 240

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           ++ ++++  K   +  A+  + DM R G +P   TY+ L++ +   G +  A +L + M+
Sbjct: 241 YSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMS 300

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
             G+   + TYTAL+  L   + +  A ++  +M T G   ++++   L+  ++K  ++D
Sbjct: 301 QVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMD 360

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            AL  L  M   GI+ +  +      S       E+AK ++    E   K +  +YT+++
Sbjct: 361 RALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLM 420

Query: 592 AHLVRCQDEQNERHLMAILSATKHKAHAF-LCGLFTGPEQRKQPVLSFVREFFHGI--DY 648
               + ++     HL+  +     +  A   C L  G  + K  ++S   ++F  I  D+
Sbjct: 421 DAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNK--LVSKAIDYFGRISNDF 478

Query: 649 ELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLS 708
            L+  AA Y    +++ L    Q+  A  +++   +  L P    +   I   L   N+ 
Sbjct: 479 GLQANAAIY--TAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVV 536

Query: 709 VGAAL 713
              AL
Sbjct: 537 QALAL 541



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 180/382 (47%), Gaps = 13/382 (3%)

Query: 186 WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM----VHDSSKNGISLFSAYNRV 241
           W+ R    VPG   +  LF VL E   F+  L  F +M    V   +++   L   + R 
Sbjct: 53  WSTRNVC-VPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFAR- 110

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
              L K D ++     FK ++ +  K    +YN+++     +G    A  ++E M+    
Sbjct: 111 ---LGKTDGMKRF---FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGL 164

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
             D  TY  MI    K GRLD  +  F+EMK  +  P    + +L++   K G+L   ++
Sbjct: 165 IPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLE 224

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
            + EM+  G +P+   Y +L++++ K   +  AL+ + +MR  G  PN   +T +++++ 
Sbjct: 225 FFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYC 284

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           K G L  A  +  +M + G      TY+ L++      ++  A +L+  M +AG+ P L+
Sbjct: 285 KIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLA 344

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFM 540
           +YTAL+    K K +D A ++L EMK  G   D+      +  +     ++ A   +  M
Sbjct: 345 SYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEM 404

Query: 541 GSSGIRTNNFIVRQLFESCMKN 562
              GI+ N FI   L ++  K+
Sbjct: 405 QEKGIKANTFIYTTLMDAYFKS 426



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 165/409 (40%), Gaps = 41/409 (10%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           D + +  LF   K +   +P    Y  + D   +    D  +  F+EM   S +  +   
Sbjct: 148 DIEAASGLFEEMKFRGL-IPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVI-- 204

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
             YN +I    K  KL      F+++  S  K +  SY+ L+  F  + +  +A + Y  
Sbjct: 205 -TYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVD 263

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +     +  TY  ++ +  K G L  A +L  EM +     +   + +L+D +    R
Sbjct: 264 MRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVER 323

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  + +++ +M   G  P+   Y +LI  + KA  +D AL L DEM+  G +P+  L+  
Sbjct: 324 IKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGT 383

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ--------------- 460
            I S     K++ A  +  +M+  G       Y+ L++ +  S                 
Sbjct: 384 FIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELD 443

Query: 461 --------------------VDSAMKLYNSMTSA-GLRPGLSTYTALLTLLAKRKLVDVA 499
                               V  A+  +  +++  GL+   + YTA++  L K   V+ A
Sbjct: 444 IEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAA 503

Query: 500 AKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
             +  +M   G   D +A + ++   +K G+V  AL     M   G+ +
Sbjct: 504 TTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVES 552


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 222/473 (46%), Gaps = 14/473 (2%)

Query: 137  KIVEVVN-RWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVP 195
            KIV ++N R+ W    ET L++         + + L+ + + D +L  F WA  Q  Y  
Sbjct: 784  KIVRILNSRFAW-EYAETALERFTGKLTTTVVGKVLQGVRNGDAALGFFDWATSQEGYNH 842

Query: 196  GD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
                C  +L  +L   R  D +    +++    S N   +F+ +  +I  L +A  +  +
Sbjct: 843  DTYTCNCLLQALLRLKRPKDALQVYRNKLC--CSPN---MFT-FTILIHGLCRAGDIGTA 896

Query: 255  YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK-GECSLDGSTYELMIP 313
            Y   K++       +   +NV++    +      A E+++ ME+ G C  D  TY  ++ 
Sbjct: 897  YELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVD 956

Query: 314  SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            SL KSG++D A +L ++M  +   P+   ++SL+  + KAG+LD +  +   M   G  P
Sbjct: 957  SLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSP 1016

Query: 374  SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
            +   Y ++I+ + K G++D A  L +EM   G +PN   +T+++++  K GK + A+ + 
Sbjct: 1017 NIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLV 1076

Query: 434  TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
              M   G++P   TY+ LL+M     +V+ A +L +SM   G  P + +Y  ++  L K 
Sbjct: 1077 EVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKA 1136

Query: 494  KLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
              V     +L +M +     D V+ + ++    K   VD A      +  SG   N    
Sbjct: 1137 TKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTY 1196

Query: 553  RQLFESCMKNALYESAKPLL-ETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
              L     K+  ++ A+ LL E   +     D++ Y +V+  L  C+ ++ +R
Sbjct: 1197 NSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGL--CKSKRVDR 1247



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 124/508 (24%), Positives = 221/508 (43%), Gaps = 78/508 (15%)

Query: 178  DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
            D++L LF+  +      P    Y  + D L +S   D    L ++MV   SK        
Sbjct: 929  DSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMV---SKGCSPNVVT 985

Query: 238  YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            Y+ ++  L KA KL+ +    +++  S C  +  +YN ++      G   +A+ + E M 
Sbjct: 986  YSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMV 1045

Query: 298  KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
             G C  +  TY +++ +  K G+ + AI L + M E+ + P+   + SL+D   K   ++
Sbjct: 1046 DGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVE 1105

Query: 358  TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + ++   M   G  P+   Y ++I    KA K+   + L ++M      P+   F  II
Sbjct: 1106 RACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTII 1165

Query: 418  ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT-SAGL 476
            ++  K+ ++DIA  +F  ++ +G  P   TY+ L+     S + D A  L   MT   G 
Sbjct: 1166 DAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGC 1225

Query: 477  RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-------YSVDVS----------ASD 519
             P + TY  ++  L K K VD A K+ L+M + G       YS+ +S          A++
Sbjct: 1226 SPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANN 1285

Query: 520  VLMVYIKDG-------------------SVDHALRWLRFMGSSG-----IRTNNFI---- 551
            VL + +K+G                   ++D AL  L+ + S G     +  + FI    
Sbjct: 1286 VLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLS 1345

Query: 552  ----VRQ---LFESCMKN-------------------ALYESAKPLLETYVESAAKVDLV 585
                +RQ   L E+ ++                    +L E A  L E   +   + D  
Sbjct: 1346 KRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNA 1405

Query: 586  LYTSVLAHLVRCQDEQNERHLMAILSAT 613
             YT+++ HLV   D+++ + L+A +S +
Sbjct: 1406 TYTTLVGHLV---DKKSYKDLLAEVSKS 1430



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 189/439 (43%), Gaps = 7/439 (1%)

Query: 159 QFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLS 218
           Q  P++V   + L+ + D   +L  F WA+ +  Y     C   L +VL ++  +     
Sbjct: 90  QLSPEIV--GKVLQRLIDPGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHD 147

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           LF   + +    G ++   Y+ +I    +A K+  +Y  F ++     K     +  ++ 
Sbjct: 148 LFRSRI-EGQWGGDTV--TYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILR 204

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
              + G    A   +  M K  C  D  TY  MI  L+KS RLD AI+L +EM +  F P
Sbjct: 205 GLCDAGQCSDAVLHFREMSK-TCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAP 263

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +   + +++    KA R++ ++ +  +M   G  P    Y ++I    K  ++D A R+ 
Sbjct: 264 NVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVM 323

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           D+M   G +PN   +  +++   + G LD A+ +   M   G+ P   TY+ ++ +    
Sbjct: 324 DKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRR 383

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA- 517
             ++ A ++   M   G  P    Y+ +++   K   +  A  +L +M   G   DV+  
Sbjct: 384 NDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACL 443

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           S ++    K  ++D A   LR         +      L  +  K      A+  L+  V+
Sbjct: 444 STLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVK 503

Query: 578 SAAKVDLVLYTSVLAHLVR 596
           +    D+V Y SV+  L +
Sbjct: 504 NRCYPDVVTYNSVVDGLCK 522



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 189/439 (43%), Gaps = 43/439 (9%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADKLE 252
           P    Y  + + L++S   D  + L +EMV     NG +  +FS YN V+    KA+++E
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMV----DNGFAPNVFS-YNTVLHGFCKANRVE 282

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +    ++++   C  D  SY  ++          +A  + + M +  C  +  TY  ++
Sbjct: 283 NALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 342

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
               + G LD A++L ++M ER +RP+   + +++    +   ++ + +V   M   G  
Sbjct: 343 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCP 402

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA--- 429
           P A  Y ++I  + KAGKL  A  L ++M   G RP+    + +I++  K+  +D A   
Sbjct: 403 PDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQEL 462

Query: 430 --MSIFTD------------------------------MERAGFLPTPSTYSCLLEMHAS 457
             MSI  D                              M +    P   TY+ +++    
Sbjct: 463 LRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCK 522

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VS 516
           S +++ A  L++ M +AG+ P + TY+ ++    K   +D A K+L  MK      D V+
Sbjct: 523 SRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVT 582

Query: 517 ASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            S ++    K G+VD A    + M   G   N      L +   K    E A  +LE   
Sbjct: 583 YSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMR 642

Query: 577 ESAAKVDLVLYTSVLAHLV 595
           + +   D + YT ++  L 
Sbjct: 643 KQSCTPDSITYTCLINGLC 661



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 151/315 (47%), Gaps = 6/315 (1%)

Query: 214  DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
            +G+L L ++M+   S N +     +N +I  + K  +++++Y  F  + +S C  +  +Y
Sbjct: 1141 EGVL-LLEQML---SNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTY 1196

Query: 274  NVLM-TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
            N L+  L  ++      + + E   K  CS D  TY  +I  L KS R+D A KLF +M 
Sbjct: 1197 NSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQML 1256

Query: 333  ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                 P    ++ ++ S+ K   +D +  V   M   G  P A  Y +LI+ + K G LD
Sbjct: 1257 SDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLD 1316

Query: 393  TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             AL +   +   G  P+   F++ I+  +K G+L  A  +   M RAG +P   TY+ LL
Sbjct: 1317 KALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLL 1376

Query: 453  EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT-LLAKRKLVDVAAKILLEMKTMGY 511
            +    +   + A+ L+  M   G  P  +TYT L+  L+ K+   D+ A++   M   G+
Sbjct: 1377 KGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGF 1436

Query: 512  SVDVSASDVLMVYIK 526
             ++   S  L   I+
Sbjct: 1437 KLNHELSSKLEASIE 1451



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 174/417 (41%), Gaps = 4/417 (0%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  + + L +    D    + D+M+    +  +     Y  ++    +   L+ +    +
Sbjct: 303 YTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVI---TYGTLVDGFCRVGDLDGAVELVR 359

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+ +   + +  +YN +M +F  +    +A ++ + M +  C  D   Y  +I    K+G
Sbjct: 360 KMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAG 419

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +L  A  L ++M  R  RP     ++L+D++ KA  +D++ ++     G    P    Y 
Sbjct: 420 KLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYS 479

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            LI +  KA +L  A    D M      P+   +  +++   KS +++ A  +F  M  A
Sbjct: 480 ILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAA 539

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G +P   TYS ++        +DSA K+   M  A   P + TY+AL+  L K   VD A
Sbjct: 540 GVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKA 599

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +  EM   G + ++   + L+  + K   V+ A   L  M       ++     L   
Sbjct: 600 FDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLING 659

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
               +  E A  +L    +     D + Y ++L  L +  + +    L+  + AT+ 
Sbjct: 660 LCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATEE 716



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 169/361 (46%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L+K+D+L+ +    ++++D+    +  SYN ++  F        A  + E M
Sbjct: 232 TYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQM 291

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D  +Y  +I  L K  ++D A ++  +M +R  +P+   + +LVD   + G L
Sbjct: 292 VTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDL 351

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++++  +M   G+RP+A  Y +++  + +   ++ A ++   M   G  P+   ++ I
Sbjct: 352 DGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTI 411

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+GKL  A  +   M R G  P  +  S L++    +  +DSA +L         
Sbjct: 412 ISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDC 471

Query: 477 RPGLSTYTALLTLLAK-RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALR 535
            P +  Y+ L+  L K ++L +  + + + +K   Y   V+ + V+    K   ++ A  
Sbjct: 472 APDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFL 531

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M ++G+  +      +  S  K+   +SA  +LE   E+    D+V Y++++  L 
Sbjct: 532 LFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLC 591

Query: 596 R 596
           +
Sbjct: 592 K 592



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 147/371 (39%), Gaps = 53/371 (14%)

Query: 178  DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
            D +  LF   + +S   P    Y  L   L +SR FD    L  EM   + K G S    
Sbjct: 1175 DIAYELFNLIQ-ESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM---TRKQGCSPDII 1230

Query: 237  AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             YN VI  L K+ +++ +Y  F ++L      D  +Y+++++         +A  + E M
Sbjct: 1231 TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELM 1290

Query: 297  EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
             K        TY  +I    K+G LD A+++ Q +  +   P    F+  +D + K GRL
Sbjct: 1291 LKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRL 1350

Query: 357  DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
              + ++   M   G  P    Y +L++ +  A   + A+ L++ MR  G  P+   +T +
Sbjct: 1351 RQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTL 1410

Query: 417  IE--------------------------SHAKSGKLDIAMSIFTDMERA-------GFLP 443
            +                           +H  S KL+ ++ +  D+          G   
Sbjct: 1411 VGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCG 1470

Query: 444  TPST---------------YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
            +P                 +S +L ++    Q + A  L+  M   G+ P   T+ +LLT
Sbjct: 1471 SPQDARKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLT 1530

Query: 489  LLAKRKLVDVA 499
            +     L+D A
Sbjct: 1531 MCCHAGLLDAA 1541



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 2/205 (0%)

Query: 408  PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
            PN   FT++I    ++G +  A  +  +M R G       ++ +++   S+ ++DSA++L
Sbjct: 875  PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALEL 934

Query: 468  YNSMTSAG-LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYI 525
            +  M  +G   P + TY+ ++  L K   VD A +++ +M + G S +V + S +L    
Sbjct: 935  FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLC 994

Query: 526  KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
            K G +D A   L+ M  SG   N      + +   K    + A  LLE  V+   + ++V
Sbjct: 995  KAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVV 1054

Query: 586  LYTSVLAHLVRCQDEQNERHLMAIL 610
             YT +L    +C   ++   L+ ++
Sbjct: 1055 TYTVLLDAFCKCGKAEDAIGLVEVM 1079



 Score = 42.0 bits (97), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 288  KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM-KERNFRPSFNIFASL 346
            +AF ++  M       D  T+  ++     +G LDAA+  F  + ++    P  + F+ +
Sbjct: 1505 QAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCV 1564

Query: 347  VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
            +D +G+ G ++ +  +   M G   +PSA  +  L+ +Y   G  + ALR+
Sbjct: 1565 IDLLGRLGLVNEAEDL---MLGMPCKPSAATWNCLLSAYKICGDFERALRV 1612


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 124/505 (24%), Positives = 214/505 (42%), Gaps = 37/505 (7%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V KI+E  N   WGP++E  L      PK   +   L+   D + ++S FRW +R++   
Sbjct: 69  VCKILESGN---WGPDVENALSLFVESPKTDLVIGVLRRAKDVNQAISYFRWTERKTDQA 125

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEM----VHDSSKNGISL---------------- 234
              E Y  L  V+ ++  FD    +  EM       S+K  I L                
Sbjct: 126 LCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDL 185

Query: 235 ------------FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
                       FSAY  +I  L+   + ++    F ++ +   ++    +  ++ +F  
Sbjct: 186 IQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAR 245

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           +G    A  + + M+      D   Y + I    K+G++D A K F E+K     P    
Sbjct: 246 EGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVT 305

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           + S++  + K  RLD +++++ +M+   + P A  Y ++I  Y  AGK D A  L +  +
Sbjct: 306 YTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQK 365

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             G  P+   +  I+    K G+L  A+  F +M++    P  STY+ L++M   +G+V+
Sbjct: 366 ARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA-APNLSTYNVLIDMLCKAGEVE 424

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVL 521
           +A K+ ++M  AGL P + T   ++  L K K +D A  I   M     S D V+   ++
Sbjct: 425 AAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLI 484

Query: 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
               K G VD A R    M  S    N  +   L +S  K    E    + +  +     
Sbjct: 485 DGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCS 544

Query: 582 VDLVLYTSVLAHLVRCQDEQNERHL 606
            DL L  + +  + +  +    R L
Sbjct: 545 PDLRLLNAYMDCVFKAGETGKGRAL 569



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 206/459 (44%), Gaps = 13/459 (2%)

Query: 145 WKWGPELETQLDKLQFVPKMVHITQALKVI---NDSDTSLSLFRWAKRQSWYVPGDECYV 201
           WK+  E+++       +P  V  T  + V+   N  D ++ +F   + Q+  VP    Y 
Sbjct: 288 WKFFHEIKSH----GLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQME-QNRNVPCAYAYN 342

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
            +      +  FD   SL +      ++  I    AYN ++  L K  +L  +   F++ 
Sbjct: 343 TMIMGYGSAGKFDEAYSLLE---RQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEE- 398

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           +  D   +  +YNVL+ +    G    AF++ ++M++     +  T  +MI  L K+ +L
Sbjct: 399 MKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKL 458

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           D A  +F+ M  +   P    F SL+D +GK GR+D + ++Y +M      P+A +Y SL
Sbjct: 459 DEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSL 518

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I+S+ K G+ +   +++ EM   G  P+  L    ++   K+G+     ++F +++  GF
Sbjct: 519 IKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGF 578

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +P   +YS L+     +G      +L+ +M   G       Y   +    K   V+ A +
Sbjct: 579 IPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQ 638

Query: 502 ILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +L EMKT G     V+   V+    K   +D A        S+G+  N  I   L +   
Sbjct: 639 LLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFG 698

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           K    + A  ++E  ++     ++  +  +L  LV+ ++
Sbjct: 699 KVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 737



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 151/313 (48%), Gaps = 4/313 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            R  DG   +F EM+H      + L +AY   +  + KA +       F+++       D
Sbjct: 526 GRKEDGH-KIFKEMIHRGCSPDLRLLNAY---MDCVFKAGETGKGRALFEEIKSRGFIPD 581

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             SY++L+   +  G   + +E++ +M++  C LD   Y   I    KSG+++ A +L +
Sbjct: 582 VMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLE 641

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EMK +  +P+   + S++D + K  RLD +  ++ E +  G   +  +Y SLI+ + K G
Sbjct: 642 EMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVG 701

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++D A  + +E+   G  PN   +  ++++  K+ +++ A+  F +M+     P   TYS
Sbjct: 702 RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYS 761

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+       + + A   +  M   GL+P   TYT ++  LAK   +  A+ +    K  
Sbjct: 762 ILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKAN 821

Query: 510 GYSVDVSASDVLM 522
           G   D ++ + ++
Sbjct: 822 GGVPDSASYNAII 834



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 150/317 (47%), Gaps = 4/317 (1%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +LF+E+    S+  I    +Y+ +I  L KA     +Y  F  + +  C +DT +YN  +
Sbjct: 568 ALFEEI---KSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFI 624

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             F   G   KA+++ E M+         TY  +I  LAK  RLD A  LF+E K     
Sbjct: 625 DGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLE 684

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
            +  I++SL+D  GK GR+D +  +  E+   G  P+   +  L+++  KA +++ AL  
Sbjct: 685 LNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVC 744

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +  M+     PN   ++++I    +  K + A   + +M++ G  P   TY+ ++   A 
Sbjct: 745 FQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAK 804

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           +G +  A  L+    + G  P  ++Y A++  L+  +    A KI  E +  G ++    
Sbjct: 805 AGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKT 864

Query: 518 SDVLMVYI-KDGSVDHA 533
              L+  + KD  ++ A
Sbjct: 865 CIALLDALQKDECLEQA 881



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 165/353 (46%), Gaps = 5/353 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  +  L D L +    D    L+++M+ DS K  I     Y  +I+   K  + E  
Sbjct: 475 PDEVTFCSLIDGLGKQGRVDDAYRLYEQML-DSDK--IPNAVVYTSLIKSFFKCGRKEDG 531

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +  FK+++   C  D +  N  M      G   K   ++E ++      D  +Y ++I  
Sbjct: 532 HKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHG 591

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+G      +LF  MKE+      + + + +D   K+G+++ + ++  EM+  G +P+
Sbjct: 592 LVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPT 651

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y S+I+  AK  +LD A  L++E +  G   N  +++ +I+   K G++D A  I  
Sbjct: 652 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIME 711

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           ++ + G  P   T++CLL+    + +++ A+  + +M +    P   TY+ L+  L + +
Sbjct: 712 ELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVR 771

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL-RFMGSSGI 545
             + A     EM+  G   + ++ + ++    K G++  A     RF  + G+
Sbjct: 772 KFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGV 824


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 180/376 (47%), Gaps = 32/376 (8%)

Query: 167 ITQALKVINDSDT-SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           + +ALK ++++   +LS FRWA++Q  +    E Y  L + L + + F+ + +L  +M  
Sbjct: 8   VFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLVTDMKQ 67

Query: 226 DS-------------------SKNGISLF------------SAYNRVIQYLAKADKLEMS 254
                                 K  +  F            S  NR++  L K+ ++E +
Sbjct: 68  KGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSRQVERA 127

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F K+       D +SY +L+  +  +    +  E+Y  M+      D  TY ++I +
Sbjct: 128 QLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINA 187

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             KS R D AI+LF EM+ +N +PS +I+ +L++ +G   RL  +++ +   +  G  P 
Sbjct: 188 HCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSKASGFVPE 247

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           AP Y +++ +Y  + ++D   R  DEMR  G  P+   + +I+    ++GK  IA S+F 
Sbjct: 248 APTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTKIAYSVFQ 307

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G  P+ STY  ++ M  +  +VD A+K+++ M + G+ P +  ++ L+  L    
Sbjct: 308 KMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLINSLCHES 367

Query: 495 LVDVAAKILLEMKTMG 510
            +D A     EM  +G
Sbjct: 368 KLDEACMYFQEMLDVG 383


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1114

 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 165/322 (51%), Gaps = 3/322 (0%)

Query: 237  AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             YN +I  L +AD +E++   F +V ++ C  D  +YN L+  +   G   + FEIY+ M
Sbjct: 789  TYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEM 848

Query: 297  EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE-MKERNFRPSFNIFASLVDSMGKAGR 355
               EC  +  T+ ++I  L K+G +D A+ L+ + M +R+F P+   +  L+D + K+GR
Sbjct: 849  SAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 908

Query: 356  LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            L  + +++  M   G RP+  +Y  LI  + KAG+ D A  L+  M   G RP+   +++
Sbjct: 909  LYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 968

Query: 416  IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-TSA 474
            +++     G++D  +  F +++ +G  P    Y+ ++       +++ A+ L+N M  S 
Sbjct: 969  LVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSR 1028

Query: 475  GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            G+ P L TY +L+  L    +V+ A KI  E++  G   +V   + L+  Y   G  +HA
Sbjct: 1029 GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1088

Query: 534  LRWLRFMGSSGIRTNNFIVRQL 555
                + M + G   N     QL
Sbjct: 1089 YAVYQTMVTGGFSPNTGTYEQL 1110



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 188/440 (42%), Gaps = 39/440 (8%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           + P  + Y  L   L + RD + ++ L  EM     K  +  F+   RV   L +A K+ 
Sbjct: 221 FRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRV---LGRAGKIN 277

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +Y   K++ D  C  D  +Y VL+           A E++  M+ G    D  TY  ++
Sbjct: 278 EAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLL 337

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG------------------ 354
              + +  LD+  + + EM++    P    F  LVD++ KAG                  
Sbjct: 338 DRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGIL 397

Query: 355 -----------------RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
                            RLD +++++  M+  G +P+A  Y+  I+ Y K+G   +AL  
Sbjct: 398 PNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET 457

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +++M+  G  PN       + S AK+G+   A  IF  ++  G +P   TY+ +++ ++ 
Sbjct: 458 FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 517

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G++D A+KL + M      P +    +L+  L K   VD A K+ + MK M     V  
Sbjct: 518 VGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 577

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            + L+  + K+G +  A+     M   G   N      LF+   KN     A  +L   +
Sbjct: 578 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 637

Query: 577 ESAAKVDLVLYTSVLAHLVR 596
           +     D+  Y +++  LV+
Sbjct: 638 DMGCVPDVFTYNTIIFGLVK 657



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/484 (23%), Positives = 208/484 (42%), Gaps = 22/484 (4%)

Query: 127 KPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRW 186
           K     S +    E  N       ++ +++++ +V     + Q   +  D++T L++F+ 
Sbjct: 108 KSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYV---FDLMQKRIIKRDTNTYLTIFKC 164

Query: 187 AK---------------RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
                            R+  +V     Y  L  +L +SR     + ++  M+ D  +  
Sbjct: 165 LSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPS 224

Query: 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291
           +  +S+   ++  L K   +E      K++     K +  ++ + + +    G   +A+E
Sbjct: 225 LQTYSS---LMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYE 281

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           I + M+   C  D  TY ++I +L  + +LD A ++F +MK    +P    + +L+D   
Sbjct: 282 ILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFS 341

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
               LD+  + + EM+  GH P    +  L+++  KAG    A    D MR  G  PN  
Sbjct: 342 DNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLH 401

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +  +I    +  +LD A+ IF +ME  G  PT  TY   ++ +  SG   SA++ +  M
Sbjct: 402 TYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKM 461

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSV 530
            + G+ P +    A L  LAK      A +I   +K +G   D    +++M  Y K G +
Sbjct: 462 KTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEI 521

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D A++ L  M  +    +  +V  L  +  K    + A  +     E   K  +V Y ++
Sbjct: 522 DEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTL 581

Query: 591 LAHL 594
           LA L
Sbjct: 582 LAGL 585



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 201/461 (43%), Gaps = 9/461 (1%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHIT---QALKVINDSDTS 180
           G+K      +   +++    +     E+  ++D     P +V  T    AL      D +
Sbjct: 255 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 314

Query: 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNR 240
             +F   K    + P    Y+ L D  +++RD D +   + EM  D     +  F+    
Sbjct: 315 KEVFAKMK-TGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTI--- 370

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           ++  L KA     ++     + D     +  +YN L+   L       A EI+++ME   
Sbjct: 371 LVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLG 430

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
                 TY + I    KSG   +A++ F++MK +   P+     + + S+ KAGR   + 
Sbjct: 431 VKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAK 490

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +++  ++  G  P +  Y  +++ Y+K G++D A++L  EM      P+  +   +I + 
Sbjct: 491 QIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTL 550

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K+ ++D A  +F  M+     PT  TY+ LL     +G++  A++L+  M   G  P  
Sbjct: 551 YKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNT 610

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRF 539
            T+  L   L K   V +A K+L +M  MG   DV + + ++   +K+G V  A+ +   
Sbjct: 611 ITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQ 670

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           M    +  +   +  L    +K  L E A  ++  ++ S A
Sbjct: 671 M-KKLVYPDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCA 710



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 146/328 (44%), Gaps = 6/328 (1%)

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL-DSDCKIDTQSYNVLMTLFL 281
           M+  SSK  +S  S   RV+      D    S+  FK V  +S+    T++ N ++    
Sbjct: 76  MIRKSSKPDLS-SSEVARVLMSFPDTDS---SFSYFKSVAGNSNLVHTTETCNYMLEALR 131

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
             G   +   +++ M+K     D +TY  +   L+  G L  A    ++M+E  F  +  
Sbjct: 132 VDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAY 191

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            +  L+  + K+     +M+VY  M   G RPS   Y SL+    K   +++ + L  EM
Sbjct: 192 SYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEM 251

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G +PN   FT+ I    ++GK++ A  I   M+  G  P   TY+ L++   ++ ++
Sbjct: 252 ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKL 311

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           D A +++  M +   +P   TY  LL   +  + +D   +   EM+  G+  DV    +L
Sbjct: 312 DCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTIL 371

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTN 548
           +    K G+   A   L  M   GI  N
Sbjct: 372 VDALCKAGNFGEAFAKLDVMRDQGILPN 399



 Score = 40.8 bits (94), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 3/143 (2%)

Query: 167  ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
            +   L ++   D  L  FR  K +S   P   CY ++ + L +    +  L LF+EM   
Sbjct: 969  LVDCLCMVGRVDEGLHYFRELK-ESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEM--K 1025

Query: 227  SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
             S+        YN +I  L  A  +E +   + ++  +  + +  ++N L+  +   G P
Sbjct: 1026 KSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKP 1085

Query: 287  YKAFEIYESMEKGECSLDGSTYE 309
              A+ +Y++M  G  S +  TYE
Sbjct: 1086 EHAYAVYQTMVTGGFSPNTGTYE 1108


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 206/447 (46%), Gaps = 10/447 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LF 235
           DT+  LFR    ++  +P    Y  L   L  +   D    L DEM     + G+    F
Sbjct: 213 DTAYKLFRQMV-ENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEM----RERGLQPDKF 267

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S Y+ ++  L K  K++M+   F+   + DC  D  +Y+ L+      G   +A +++E 
Sbjct: 268 S-YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEK 326

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +  C  D  T+  ++  L K  RL  A ++ + M++RN  P+   ++SL+D + K G+
Sbjct: 327 MRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ 386

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  + +V+  M   G  P+   Y SLI  +     +D+AL L +EM   G  P+   +  
Sbjct: 387 VRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNT 446

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+   K+G+   A  +F DM+     P   TYSCL+       ++D A  L++ M    
Sbjct: 447 LIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 506

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHAL 534
           + P + T++ L+       LVD A ++L EM     S DV + + ++  + K G +  A 
Sbjct: 507 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 566

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           R L+ M   G + N      L ++  +      A  LLE  V +  + +++ Y S++   
Sbjct: 567 RVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGF 626

Query: 595 VRCQDEQNERHLMAILSATKH-KAHAF 620
               D +  R ++  L   ++ KA  F
Sbjct: 627 CGTGDLEEARKILERLERDENCKADMF 653



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 197/466 (42%), Gaps = 56/466 (12%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG-- 231
           ++D D +L  F WA +Q  +      Y  LF+ L  +R  D    +         KNG  
Sbjct: 1   MSDPDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHIL--------KNGWP 52

Query: 232 ----ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
                ++F+ Y  VIQ L K+  L+ +    +++ +S    D   YN ++          
Sbjct: 53  PGITPNVFT-YAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTA 111

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF------------------- 328
           KA + + SM   EC  +  T+ +MI  L K+ RL  A   F                   
Sbjct: 112 KALDYFRSM---ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLI 168

Query: 329 ----------------QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
                           +EMKE    P+   +++++    +  ++DT+ K++ +M   G  
Sbjct: 169 NGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCM 228

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y +L+    + G +D A  L DEMR  G +P+   +  ++    K+GK+D+A+ +
Sbjct: 229 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F D       P    YS L+     +G++D A KL+  M      P + T+TAL+  L K
Sbjct: 289 FEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 348

Query: 493 RKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
              +  A ++L  M+    + +V + S ++    K G V  A    + M   GI  N   
Sbjct: 349 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 408

Query: 552 VRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              L    CM N + +SA  L+E    +    D++ Y +++  L +
Sbjct: 409 YNSLIHGFCMTNGV-DSALLLMEEMTATGCLPDIITYNTLIDGLCK 453



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 171/390 (43%), Gaps = 36/390 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    K  K+  +Y   K++ +S    +  +Y+ ++  F  +     A++++  M 
Sbjct: 164 YNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMV 223

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  +  TY  ++  L ++G +D A +L  EM+ER  +P    + +L+  + K G++D
Sbjct: 224 ENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKID 283

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++KV+ +       P    Y +LI    KAG+LD A +L+++MR     P+   FT ++
Sbjct: 284 MALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALM 343

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K  +L  A  +   ME     P   TYS L++    +GQV  A +++  M   G+ 
Sbjct: 344 DGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 403

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P + TY +L+        VD A  ++ EM   G   D+   + L+  + K G    A R 
Sbjct: 404 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL 463

Query: 537 L-----RFMGSSGIRTNNFI-----------VRQLFESCMKNA----------------- 563
                 +F     I  +  I            R LF+  +K A                 
Sbjct: 464 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCN 523

Query: 564 --LYESAKPLLETYVESAAKVDLVLYTSVL 591
             L + A+ LLE  V S    D+  YTS++
Sbjct: 524 AGLVDDAERLLEEMVASDCSPDVYTYTSLV 553



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 101/225 (44%), Gaps = 5/225 (2%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           D    L +EMV       +     Y  ++    K  ++  +    K++    C+ +  +Y
Sbjct: 528 DDAERLLEEMVASDCSPDVY---TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTY 584

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM-K 332
             L+  F   G P  A+ + E M       +  TY  +I     +G L+ A K+ + + +
Sbjct: 585 TALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLER 644

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           + N +     +  ++D + + GR+  ++++   ++  G  P   +YV+LI    +  +L 
Sbjct: 645 DENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELG 704

Query: 393 TALRLWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            A+ + +EM ++   RPN   +  +I+  A+ G+ + A ++  ++
Sbjct: 705 KAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADEL 749


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/473 (21%), Positives = 212/473 (44%), Gaps = 13/473 (2%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V  +  V+    WGP++E  L+    + +   I   +K + D + +   FRW +R++   
Sbjct: 71  VYDLCGVLENGLWGPDVEEALNVFDEMSQPEVIVGVMKRLKDVNVAFQYFRWVERKTQQA 130

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV----IQYLAKADK 250
              E Y     V+  +R+ D +  + +EM        ++ F   N V    +    K+ K
Sbjct: 131 HCPEVYNAFLMVMARTRNLDYLEQILEEM-------SVAGFGLSNHVSVELVASFVKSHK 183

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           L+ ++   + +     +    +Y  L+        P     ++  M++     +   +  
Sbjct: 184 LKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTT 243

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++   A+ GR+DAA+ L  EMK  +F     ++   +D  GK G++D + K + EM+  G
Sbjct: 244 LVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG 303

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P    Y +LI    KA +LD A+ L++E+ +    P    +  +I  +  +GK D A 
Sbjct: 304 LVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAY 363

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           S+    +R G +P+   Y+C+L      G+V+ A+++++ M      P L+TY  L+ +L
Sbjct: 364 SLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA-APNLTTYNILIDML 422

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K   ++ A K+   MK  G   ++   ++++  + K   +D A      +       ++
Sbjct: 423 CKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDS 482

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
                L +   +    + A  L E  ++S    ++V+YTS++ +  +C  +++
Sbjct: 483 RTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKED 535



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 199/462 (43%), Gaps = 41/462 (8%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           +   D +   F   K Q   VP D  Y  L  VL ++R  D  + LF+E+  + S   + 
Sbjct: 286 VGKVDMAWKFFHEMKAQGL-VPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRS---VP 341

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
              AYN +I     A K + +Y   ++     C     +YN ++T    KG   +A  I+
Sbjct: 342 CVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIH 401

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP---SFNI-------- 342
           + M + + + + +TY ++I  L K+G L+AA+K+   MKE    P   + NI        
Sbjct: 402 DEMRQ-DAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKA 460

Query: 343 ------------------------FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
                                   F SL+D +G+ GR+D +  +Y +M      P+  +Y
Sbjct: 461 QKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVY 520

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SLI+++ K G+ +   +++ EM   G  P+  L    ++   K+G+++   ++F +++ 
Sbjct: 521 TSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKA 580

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G +P   +YS L+     +G      KL+  M   GL   +  Y  ++    K   VD 
Sbjct: 581 QGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDK 640

Query: 499 AAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A ++L EMKT G     V+   V+    K   +D A        S G+  N  I   L +
Sbjct: 641 AYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLID 700

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              K    + A  +LE  ++     +   +  +L  LV+ ++
Sbjct: 701 GFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEE 742



 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 140/283 (49%), Gaps = 4/283 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            R  DG   ++ EMVH      + L ++Y   +  + KA ++E     F+++       D
Sbjct: 531 GRKEDGH-KIYKEMVHRGCSPDLMLLNSY---MDCVFKAGEVEKGRALFEEIKAQGLVPD 586

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            +SY++L+   +  G   + ++++  M++    LD   Y  +I    KSG++D A +L +
Sbjct: 587 VRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLE 646

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EMK +  +P+   + S+VD + K  RLD +  ++ E +  G   +  +Y SLI+ + K G
Sbjct: 647 EMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVG 706

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++D A  + +E+   G  PN   +  ++++  K+ ++D A   F +M+     P   TYS
Sbjct: 707 RIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYS 766

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
            ++       + + A   +  M   GL+P   TYT ++  LAK
Sbjct: 767 IMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAK 809



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 164/354 (46%), Gaps = 7/354 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    +  L D L      D   SL+++M+ DS +  I     Y  +IQ   K  + E  
Sbjct: 480 PDSRTFCSLIDGLGRRGRVDDAYSLYEKML-DSDQ--IPNVVVYTSLIQNFFKCGRKEDG 536

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +  +K+++   C  D    N  M      G   K   ++E ++      D  +Y ++I  
Sbjct: 537 HKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHG 596

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+G      KLF EMKE+        + +++D   K+G++D + ++  EM+  G +P+
Sbjct: 597 LVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPT 656

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y S+++  AK  +LD A  L++E +  G   N  +++ +I+   K G++D A  I  
Sbjct: 657 VVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILE 716

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           ++ + G  P   T++CLL+    + ++D A   + +M +    P   TY+ ++  L   +
Sbjct: 717 ELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIR 776

Query: 495 LVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWL--RFMGSSGI 545
             + A     EM+  G    +++ + ++    K G+V  A R L  RF  S G+
Sbjct: 777 KFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEA-RGLFDRFKASGGV 829



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 143/305 (46%), Gaps = 3/305 (0%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +LF+E+    ++  +    +Y+ +I  L KA     +Y  F ++ +    +D  +YN ++
Sbjct: 573 ALFEEI---KAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVI 629

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             F   G   KA+++ E M+         TY  ++  LAK  RLD A  LF+E K     
Sbjct: 630 DGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVD 689

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
            +  I++SL+D  GK GR+D +  +  E+   G  P++  +  L+++  KA ++D A   
Sbjct: 690 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVC 749

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +  M+     PN   ++++I       K + A   + +M++ G  P   TY+ ++   A 
Sbjct: 750 FQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAK 809

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           +G V  A  L++   ++G  P  + Y A++  L+       A  +  E +  G  V+   
Sbjct: 810 AGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKT 869

Query: 518 SDVLM 522
             VL+
Sbjct: 870 CVVLL 874


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 206/447 (46%), Gaps = 10/447 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LF 235
           DT+  LFR    ++  +P    Y  L   L  +   D    L DEM     + G+    F
Sbjct: 94  DTAYKLFRQMV-ENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEM----RERGLQPDKF 148

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S Y+ ++  L K  K++M+   F+   + DC  D  +Y+ L+      G   +A +++E 
Sbjct: 149 S-YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEK 207

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +  C  D  T+  ++  L K  RL  A ++ + M++RN  P+   ++SL+D + K G+
Sbjct: 208 MRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ 267

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  + +V+  M   G  P+   Y SLI  +     +D+AL L +EM   G  P+   +  
Sbjct: 268 VRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNT 327

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+   K+G+   A  +F DM+     P   TYSCL+       ++D A  L++ M    
Sbjct: 328 LIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 387

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHAL 534
           + P + T++ L+       LVD A ++L EM     S DV + + ++  + K G +  A 
Sbjct: 388 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 447

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           R L+ M   G + N      L ++  +      A  LLE  V +  + +++ Y S++   
Sbjct: 448 RVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGF 507

Query: 595 VRCQDEQNERHLMAILSATKH-KAHAF 620
               D +  R ++  L   ++ KA  F
Sbjct: 508 CGTGDLEEARKMLERLERDENCKADMF 534



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 170/391 (43%), Gaps = 36/391 (9%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    K  K+  +Y   K++ +S    +  +Y+ ++  F  +     A++++  M
Sbjct: 44  TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQM 103

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C  +  TY  ++  L ++G +D A +L  EM+ER  +P    + +L+  + K G++
Sbjct: 104 VENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKI 163

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++KV+ +       P    Y +LI    K G+LD A +L+++MR     P+   FT +
Sbjct: 164 DMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTAL 223

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K  +L  A  +   ME     P   TYS L++    +GQV  A +++  M   G+
Sbjct: 224 MDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI 283

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P + TY +L+        VD A  ++ EM   G   D+   + L+  + K G    A R
Sbjct: 284 EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANR 343

Query: 536 WL-----RFMGSSGIRTNNFI-----------VRQLFESCMKNA---------------- 563
                  +F     I  +  I            R LF+  +K A                
Sbjct: 344 LFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYC 403

Query: 564 ---LYESAKPLLETYVESAAKVDLVLYTSVL 591
              L + A+ LLE  V S    D+  YTS++
Sbjct: 404 NAGLVDDAERLLEEMVASDCSPDVYTYTSLV 434



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 138/292 (47%), Gaps = 3/292 (1%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY ++I    K  ++  A  L +EMKE    P+   +++++    +  ++DT+ K++ +M
Sbjct: 44  TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQM 103

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G  P+   Y +L+    + G +D A  L DEMR  G +P+   +  ++    K+GK+
Sbjct: 104 VENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKI 163

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           D+A+ +F D       P    YS L+     +G++D A KL+  M      P + T+TAL
Sbjct: 164 DMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTAL 223

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           +  L K   +  A ++L  M+    + +V + S ++    K G V  A    + M   GI
Sbjct: 224 MDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI 283

Query: 546 RTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             N      L    CM N + +SA  L+E    +    D++ Y +++  L +
Sbjct: 284 EPNVVTYNSLIHGFCMTNGV-DSALLLMEEMTATGCLPDIITYNTLIDGLCK 334



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 158/357 (44%), Gaps = 1/357 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I  L KA++L  +   F K+       +  +YNVL+  F      ++A+ + + M++  
Sbjct: 13  MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 72

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            + +  TY  +I    +  ++D A KLF++M E    P+   + +L+  + + G +D + 
Sbjct: 73  LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY 132

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           ++  EM+  G +P    Y +L+    K GK+D AL+++++       P+   ++ +I   
Sbjct: 133 ELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGL 192

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K+G+LD A  +F  M      P   T++ L++      ++  A ++  +M      P +
Sbjct: 193 CKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNV 252

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRF 539
            TY++L+  L K   V  A ++   M   G   +V   + L+  +     VD AL  +  
Sbjct: 253 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEE 312

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           M ++G   +      L +   K      A  L           D++ Y+ ++    +
Sbjct: 313 MTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 369



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           L +EMV       +     Y  ++    K  ++  +    K++    C+ +  +Y  L+ 
Sbjct: 414 LLEEMVASDCSPDVY---TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALID 470

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM-KERNFR 337
            F   G P  A+++ E M       +  TY  +I     +G L+ A K+ + + ++ N +
Sbjct: 471 AFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCK 530

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
                +  ++D + + GR+  ++++   ++  G  P   +YV+LI    +  +L  A+ +
Sbjct: 531 ADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEV 590

Query: 398 WDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            +EM ++   RPN   +  +I+  A+ G+ + A ++  ++
Sbjct: 591 LEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADEL 630


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 172/362 (47%), Gaps = 1/362 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S +  VI  L    + E +   F+++ +   K   +++N L+  +  KG   +A  I   
Sbjct: 317 STFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISE 376

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           MEK   S D  TY L++ + A  GR ++A  L ++M+ RN +P+  IF+ ++ S    G 
Sbjct: 377 MEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGE 436

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              + +V  EM+    +P    Y  +I+++ K   LD A+  +D M   G  P+   +  
Sbjct: 437 WQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNT 496

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+ H K G  D A  +F +M+  G+LP P+TY+ ++       + D    L   M S G
Sbjct: 497 LIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQG 556

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           L P + TYT L+ +       + A   L  MK+ G     +  + L+  + + G  + A+
Sbjct: 557 LLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAV 616

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
              R M S G+R +   +  L  +  ++     A  +L+   E+  K D+V YT+++  L
Sbjct: 617 NAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKAL 676

Query: 595 VR 596
           +R
Sbjct: 677 IR 678



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 143/315 (45%), Gaps = 5/315 (1%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC-- 256
            Y  L      + D +  L+L   M  D  +   S F  Y+ +IQ L + +K+++     
Sbjct: 211 TYNALIGACARNNDLEKALNLMSRMRQDGFQ---SDFINYSLIIQSLTRTNKIDIPLLQK 267

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            ++++     ++D    N ++  F   G P +A      ++    +   ST+  +I +L 
Sbjct: 268 LYEEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALG 327

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
             GR + A  +F+EMKE   +P    F +L+    + G L  +  +  EM+  G  P   
Sbjct: 328 NHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEH 387

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y  L+++YA  G+ ++A  L  +M     +PN  +F+ I+ S+   G+      +  +M
Sbjct: 388 TYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREM 447

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           + +   P    Y+ +++       +D AM+ Y+ M S G+ P + T+  L+    K    
Sbjct: 448 KNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYH 507

Query: 497 DVAAKILLEMKTMGY 511
           D AA++  EM+  GY
Sbjct: 508 DRAAELFEEMQERGY 522



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 154/343 (44%), Gaps = 8/343 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  L +++KL   Y  F  +L     +   +YN L+          KA  +   M 
Sbjct: 182 YSILIHALGRSEKL---YEAF--ILSQKQTLTPLTYNALIGACARNNDLEKALNLMSRMR 236

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAI--KLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +     D   Y L+I SL ++ ++D  +  KL++E++         +   ++    KAG 
Sbjct: 237 QDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFAKAGD 296

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            + ++     +Q  G  P    +V++I +    G+ + A  +++EM+  G +P    F  
Sbjct: 297 PNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNA 356

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++ +A+ G L  A SI ++ME++G  P   TY  L++ +A+ G+ +SA  L   M +  
Sbjct: 357 LLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARN 416

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           ++P    ++ +L     R       ++L EMK      D    +V++  + K   +DHA+
Sbjct: 417 VQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAM 476

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
                M S GI  +      L +   K+  ++ A  L E   E
Sbjct: 477 ETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQE 519



 Score = 99.4 bits (246), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 146/332 (43%), Gaps = 3/332 (0%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +S   P +  Y +L D       ++    L  +M   + +    +FS   R++       
Sbjct: 379 KSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFS---RILASYRDRG 435

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           + + ++   +++ +S+ K D   YNV++  F        A E Y+ M       D  T+ 
Sbjct: 436 EWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWN 495

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I    K G  D A +LF+EM+ER + P    +  +++S+G+  + D    +  +MQ  
Sbjct: 496 TLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQ 555

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   Y +L++ Y  +G+ + A+   + M+ AG +P+  ++  +I + A+ G  + A
Sbjct: 556 GLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQA 615

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           ++ +  M   G  P+    + L+       +   A  +   M    ++P + TYT L+  
Sbjct: 616 VNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKA 675

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           L +    D    +  EM   G + D  A  +L
Sbjct: 676 LIRVDKFDKVPAVYEEMILSGCTPDGKARAML 707



 Score = 41.2 bits (95), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA--AK 501
           TP TY+ L+   A +  ++ A+ L + M   G +     Y+ ++  L +   +D+    K
Sbjct: 208 TPLTYNALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQK 267

Query: 502 ILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI--RTNNFIVRQLFES 558
           +  E+++    +D +  +D+++ + K G  + AL +L  + +SG+  +T+ F+   +  +
Sbjct: 268 LYEEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVA--VISA 325

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +   E A+ + E   E   K  +  + ++L    R
Sbjct: 326 LGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYAR 363


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 182/399 (45%), Gaps = 6/399 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D L ++++ D    +F +MV    K N ++    YN +I  L KA +++M+   F
Sbjct: 228 YNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVT----YNTIIDGLCKAQEVDMAEGVF 283

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +K++D   K    +YN ++          +A  +++ M       D  TY  +I  L K+
Sbjct: 284 QKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKA 343

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
             +D A  +FQ+M ++  +P    +  ++D + KA  +D +  V+ +M   G +P+   Y
Sbjct: 344 QAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTY 403

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI  Y   G+ +  ++   EM      P+   + ++++   K+GK + A S+F  M R
Sbjct: 404 NCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIR 463

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P+ + Y  +L  +   G +     L N M + G+ P    +  ++   AKR ++D 
Sbjct: 464 KGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDE 523

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
              I ++MK  G S +V     L+    K G VD A+     M + G+  NN +   L  
Sbjct: 524 VMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVY 583

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                  +E  + L    +    + D+V + +VL +L +
Sbjct: 584 GLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCK 622



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 183/408 (44%), Gaps = 14/408 (3%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253
           P    Y  + D L +++  D    +F +M+    K + ++    Y  +I  L KA  ++ 
Sbjct: 328 PDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLT----YTIIIDGLCKAQSVDR 383

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F++++D   K +  +YN L+  +L+ G   +  +  + M   +   D  TY L++ 
Sbjct: 384 AEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLD 443

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K+G+ + A  LF  M  +  +PS  I+  ++   GK G L     +   M   G  P
Sbjct: 444 YLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISP 503

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +  ++ ++I +YAK   +D  + ++ +M+  G  PN   +  +I++  K G++D A+  F
Sbjct: 504 NHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQF 563

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G  P    ++ L+    +  + +   +L+  M + G+RP +  +  +L  L K 
Sbjct: 564 NQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKE 623

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG-----SVDHALRWLRFMGSSGIRTN 548
             V  A +++  M  MG   DV + + L+    DG      +D A++ L  M S+G++ N
Sbjct: 624 GRVMEARRLIDSMVCMGLKPDVISYNTLI----DGHCFASRMDEAVKLLDGMVSAGLKPN 679

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                 L     K    ++A  L    +       +  Y ++L  L R
Sbjct: 680 IVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFR 727



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 39/370 (10%)

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
           DS C  D  SYN+++  F N+G   KA+ ++  +E G  S D  TY  +I  L K+  +D
Sbjct: 186 DSSCSPDVVSYNIVINGFFNEGQVDKAYSLF--LEMG-VSPDVVTYNTIIDGLCKAQEVD 242

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A  +FQ+M E+  +P+   + +++D + KA  +D +  V+ +M   G +PS   Y ++I
Sbjct: 243 RAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTII 302

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNF--------------------GLF--------- 413
           +   KA  +D A  ++ +M   G +P+                     G+F         
Sbjct: 303 DGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVK 362

Query: 414 ------TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
                 T+II+   K+  +D A  +F  M   G  P   TY+CL+  + S+GQ +  ++ 
Sbjct: 363 PDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQR 422

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIK 526
              M++  L P + TY  LL  L K    + A  +   M   G    V+   +++  Y K
Sbjct: 423 IKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGK 482

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
            G++      L  M ++GI  N+ I   +  +  K A+ +    +     +     ++V 
Sbjct: 483 KGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVT 542

Query: 587 YTSVLAHLVR 596
           Y +++  L +
Sbjct: 543 YGTLIDALCK 552



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 174/415 (41%), Gaps = 43/415 (10%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS------------ 264
           +S F+ M+ D S         Y+ VI    +  +LE+ +  F  +L +            
Sbjct: 66  VSRFNRMLRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQL 125

Query: 265 ------------------------DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
                                    C++   SYN L+    ++    +A E+   M  G+
Sbjct: 126 LKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQ 185

Query: 301 ---CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              CS D  +Y ++I      G++D A  LF EM      P    + +++D + KA  +D
Sbjct: 186 DSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVD 242

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  V+ +M   G +P+   Y ++I+   KA ++D A  ++ +M   G +P+   +  II
Sbjct: 243 RAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTII 302

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K+  +D A  +F  M   G  P   TY+ +++    +  +D A  ++  M   G++
Sbjct: 303 DGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVK 362

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P   TYT ++  L K + VD A  +  +M   G   +    + L+  Y+  G  +  ++ 
Sbjct: 363 PDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQR 422

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           ++ M +  +  + F    L +   KN     A+ L ++ +    K  + +Y  +L
Sbjct: 423 IKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIML 477



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 177/397 (44%), Gaps = 4/397 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L D L ++   +   SLFD M+    K  +++   Y  ++    K   L   +    
Sbjct: 438 YGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTI---YGIMLHGYGKKGALSEMHDLLN 494

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++ +    + + +N ++  +  + +  +   I+  M++   S +  TY  +I +L K G
Sbjct: 495 LMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLG 554

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R+D A+  F +M      P+  +F SLV  +    + +   ++++EM   G RP    + 
Sbjct: 555 RVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFN 614

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +++ +  K G++  A RL D M   G +P+   +  +I+ H  + ++D A+ +   M  A
Sbjct: 615 TVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSA 674

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   +Y+ LL  +  +G++D+A  L+  M   G+ PG+ TY  +L  L +      A
Sbjct: 675 GLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEA 734

Query: 500 AKILLEM-KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            ++ + M K+       + S +L  + K+   D A +  + + S  ++ +      + + 
Sbjct: 735 RELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDG 794

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             K    E A  L      +     +V Y  +  +L+
Sbjct: 795 LFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLI 831



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 166/404 (41%), Gaps = 26/404 (6%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY ++I    + GRL+     F  + +  +R    +   L+  +    R+  +M V 
Sbjct: 83  DCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVL 142

Query: 364 M-EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM---RIAGFRPNFGLFTMIIES 419
           + +M   G R     Y +L++      + + A  L   M   + +   P+   + ++I  
Sbjct: 143 LRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVING 202

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
               G++D A S+F +M   G  P   TY+ +++    + +VD A  ++  M   G++P 
Sbjct: 203 FFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPN 259

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG-----SVDHAL 534
             TY  ++  L K + VD+A  +  +M   G    V  S+V    I DG     +VD A 
Sbjct: 260 NVTYNTIIDGLCKAQEVDMAEGVFQKMVDKG----VKPSNVTYNTIIDGLCKAQAVDRAE 315

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
              + M   G++ ++     + +   K    + A+ + +  ++   K D + YT ++  L
Sbjct: 316 GVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGL 375

Query: 595 VRCQ--DEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQ--PVLSFVREFFHGIDYEL 650
            + Q  D         I    K     + C L  G     Q   V+  ++E      ++L
Sbjct: 376 CKAQSVDRAEGVFQQMIDKGVKPNNGTYNC-LIHGYLSTGQWEEVVQRIKEMSA---HDL 431

Query: 651 EEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVF 694
           E     Y   +LL+YL   G+ N AR ++       + P   ++
Sbjct: 432 EPDVFTY--GLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIY 473



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/370 (20%), Positives = 152/370 (41%), Gaps = 40/370 (10%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAK 247
           +Q    P    Y  L D L +    D  +  F++M+++  + N +     +N ++  L  
Sbjct: 532 KQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNV----VFNSLVYGLCT 587

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME---------- 297
            DK E     F ++L+   + D   +N ++     +G   +A  + +SM           
Sbjct: 588 VDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVIS 647

Query: 298 -----KGEC----------SLDG----------STYELMIPSLAKSGRLDAAIKLFQEMK 332
                 G C           LDG           +Y  ++    K+GR+D A  LF+EM 
Sbjct: 648 YNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREML 707

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
            +   P    + ++++ + ++GR   + ++Y+ M       S   Y  +++ + K    D
Sbjct: 708 RKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFD 767

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A +++  +     + +   F ++I+   K G+ + AM +F  +   G +P+  TY  + 
Sbjct: 768 EAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIA 827

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           E     G ++    L++ M  +G  P      AL+  L  R  +  A   L ++    +S
Sbjct: 828 ENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFS 887

Query: 513 VDVSASDVLM 522
           ++ S + +L+
Sbjct: 888 LEASTTSMLI 897



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 3/242 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            D  + L D MV    K  I    +YN ++    KA +++ +YC F+++L        ++
Sbjct: 661 MDEAVKLLDGMVSAGLKPNIV---SYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVET 717

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN ++      G   +A E+Y +M K        TY +++    K+   D A K+FQ + 
Sbjct: 718 YNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLC 777

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
             + +     F  ++D + K GR + +M ++  +   G  PS   Y  + E+  + G L+
Sbjct: 778 SMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLE 837

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
               L+  M  +G  PN  +   +I      G++  A +  + ++   F    ST S L+
Sbjct: 838 ELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLI 897

Query: 453 EM 454
            +
Sbjct: 898 SL 899



 Score = 46.6 bits (109), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 18/297 (6%)

Query: 316 AKSGRLD--AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME-----MQG 368
           A+SG L    A+KLF E+       S      L+  + +A +  +S K+ +      ++ 
Sbjct: 17  ARSGNLGLHDALKLFDELLLHARPASVRALNQLLSVVSRA-KCSSSSKLAVSRFNRMLRD 75

Query: 369 CGHR--PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           C ++  P    Y  +I  + + G+L+     +  +   G+R +  +   +++    + ++
Sbjct: 76  CSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRV 135

Query: 427 DIAMSIF-TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS---AGLRPGLST 482
             AM +    M   G      +Y+ LL+      + + A +L + M     +   P + +
Sbjct: 136 GEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVS 195

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMG 541
           Y  ++        VD A  + LEM   G S DV   + ++  + K   VD A    + M 
Sbjct: 196 YNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMV 252

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
             G++ NN     + +   K    + A+ + +  V+   K   V Y +++  L + Q
Sbjct: 253 EKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQ 309


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 175/362 (48%), Gaps = 2/362 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L+K+D+L+ +    ++++D+    +  SYN ++  F        A  + E M
Sbjct: 46  TYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQM 105

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D  +Y  +I  L K  ++D A ++  +M +R  +P+   + +LVD   + G L
Sbjct: 106 VMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDL 165

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG-FRPNFGLFTM 415
           D ++++  +M   G+RP+A  Y +++       KLD+AL+L+ EM  +G   P+   ++ 
Sbjct: 166 DGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYST 225

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I++S  KSGK+D A  +   M   G  P   TYS LL     +G++D A  L   MT +G
Sbjct: 226 IVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG 285

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
             P + TY  ++    K   +D A  +L EM   G   +V    VL+  + K G  + A+
Sbjct: 286 CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAI 345

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             +  M   G   N F    L +   K    E A  LL + ++     ++V Y +V+A L
Sbjct: 346 GLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 405

Query: 595 VR 596
            +
Sbjct: 406 CK 407



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 192/406 (47%), Gaps = 9/406 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADKLE 252
           P    Y  + + L++S   D  + L +EMV     NG +  +FS YN V+    KA+++E
Sbjct: 42  PDSVTYNTMINGLSKSDRLDDAIRLLEEMV----DNGFAPNVFS-YNTVLHGFCKANRVE 96

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +    ++++   C  D  SY  ++          +A  + + M +  C  +  TY  ++
Sbjct: 97  NALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 156

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH- 371
               + G LD A++L ++M ER +RP+   + +++  +    +LD++++++ EM+  G  
Sbjct: 157 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSC 216

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P    Y ++++S  K+GK+D A RL + M   G  PN   ++ ++    K+GKLD A +
Sbjct: 217 PPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATA 276

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +   M R+G  P   TY+ +++ H   G++D A  L   M   G +P + TYT LL    
Sbjct: 277 LLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFC 336

Query: 492 KRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           K    + A  ++  M   GY  ++ + + +L ++ K   V+ A + L  M   G   N  
Sbjct: 337 KCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVV 396

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               +     K         LLE  + +    D+V + +++  + +
Sbjct: 397 SYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCK 442



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 190/408 (46%), Gaps = 8/408 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  + + L +    D    + D+M+    +  +     Y  ++    +   L+ +    +
Sbjct: 117 YTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVI---TYGTLVDGFCRVGDLDGAVELVR 173

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK-GECSLDGSTYELMIPSLAKS 318
           K+ +   + +  +YN +M    +      A ++++ ME+ G C  D  TY  ++ SL KS
Sbjct: 174 KMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKS 233

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G++D A +L + M  +   P+   ++SL+  + KAG+LD +  +   M   G  P+   Y
Sbjct: 234 GKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTY 293

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            ++I+ + K G++D A  L +EM   G +PN   +T+++++  K GK + A+ +   M  
Sbjct: 294 NTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVE 353

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G++P   TY+ LL+M     +V+ A +L +SM   G  P + +Y  ++  L K   V  
Sbjct: 354 KGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHE 413

Query: 499 AAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
              +L +M +     D V+ + ++    K   VD A      +  SG   N      L  
Sbjct: 414 GVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVH 473

Query: 558 SCMKNALYESAKPLL-ETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
              K+  ++ A+ LL E   +     D++ Y +V+  L  C+ ++ +R
Sbjct: 474 GLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGL--CKSKRVDR 519



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 157/341 (46%), Gaps = 39/341 (11%)

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           C  D  TY  MI  L+KS RLD AI+L +EM +  F P+   + +++    KA R++ ++
Sbjct: 40  CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENAL 99

Query: 361 KVY--MEMQGC---------------------------------GHRPSAPMYVSLIESY 385
            +   M M+GC                                 G +P+   Y +L++ +
Sbjct: 100 WLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGF 159

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            + G LD A+ L  +M   G+RPN   +  I+       KLD A+ +F +ME +G  P  
Sbjct: 160 CRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPD 219

Query: 446 S-TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TYS +++    SG+VD A +L  +M S G  P + TY++LL  L K   +D A  +L 
Sbjct: 220 VFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQ 279

Query: 505 EMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
            M   G S + V+ + ++  + K G +D A   L  M   G + N      L ++  K  
Sbjct: 280 RMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCG 339

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
             E A  L+E  VE     +L  Y S+L     C+ ++ ER
Sbjct: 340 KAEDAIGLVEVMVEKGYVPNLFTYNSLLDMF--CKKDEVER 378



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 124/508 (24%), Positives = 219/508 (43%), Gaps = 78/508 (15%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D++L LF+  +      P    Y  + D L +S   D    L + MV   SK        
Sbjct: 201 DSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMV---SKGCSPNVVT 257

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ ++  L KA KL+ +    +++  S C  +  +YN ++      G   +A+ + E M 
Sbjct: 258 YSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMV 317

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            G C  +  TY +++ +  K G+ + AI L + M E+ + P+   + SL+D   K   ++
Sbjct: 318 DGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVE 377

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + ++   M   G  P+   Y ++I    KA K+   + L ++M      P+   F  II
Sbjct: 378 RACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTII 437

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT-SAGL 476
           ++  K+ ++DIA  +F  ++ +G  P   TY+ L+     S + D A  L   MT   G 
Sbjct: 438 DAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGC 497

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-------YSVDVS----------ASD 519
            P + TY  ++  L K K VD A K+ L+M + G       YS+ +S          A++
Sbjct: 498 SPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANN 557

Query: 520 VLMVYIKDG-------------------SVDHALRWLRFMGSSG-----IRTNNFI---- 551
           VL + +K+G                   ++D AL  L+ + S G     +  + FI    
Sbjct: 558 VLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLS 617

Query: 552 ----VRQ---LFESCMKNALY-------------------ESAKPLLETYVESAAKVDLV 585
               +RQ   L E+ ++  L                    E A  L E   +   + D  
Sbjct: 618 KRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNA 677

Query: 586 LYTSVLAHLVRCQDEQNERHLMAILSAT 613
            YT+++ HLV   D+++ + L+A +S +
Sbjct: 678 TYTTLVGHLV---DKKSYKDLLAEVSKS 702



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 148/303 (48%), Gaps = 6/303 (1%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           +G+L L ++M+   S N +     +N +I  + K  +++++Y  F  + +S C  +  +Y
Sbjct: 413 EGVL-LLEQML---SNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTY 468

Query: 274 NVLM-TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           N L+  L  ++      + + E   K  CS D  TY  +I  L KS R+D A KLF +M 
Sbjct: 469 NSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQML 528

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P    ++ ++ S+ K   +D +  V   M   G  P A  Y +LI+ + K G LD
Sbjct: 529 SDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLD 588

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            AL +   +   G  P+   F++ I+  +K G+L  A  +   M RAG +P   TY+ LL
Sbjct: 589 KALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLL 648

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT-LLAKRKLVDVAAKILLEMKTMGY 511
           +    + + + A+ L+  M   G  P  +TYT L+  L+ K+   D+ A++   M   G+
Sbjct: 649 KGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGF 708

Query: 512 SVD 514
            ++
Sbjct: 709 KLN 711


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 179/385 (46%), Gaps = 2/385 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-AFEIYE 294
           SAY  ++   ++A +   +   F++++ +  +    +YNV++ ++    +P+K    + +
Sbjct: 179 SAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVALVD 238

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           SM+     LD  TY  +I    +      A K+F EM+   F P    F SL+D  GKA 
Sbjct: 239 SMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKAR 298

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
             D ++ V  EM+  G  PS   Y SLI SY K G L  A  L +EM + G +P+   +T
Sbjct: 299 MHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYT 358

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    ++GK+D A+  + +M R G  P   TY+ L+++H   G+    M +++ + SA
Sbjct: 359 TLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSA 418

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHA 533
           G  P + T+  LL +  +  L    + +  EMK  GY  +      ++  Y + G  D +
Sbjct: 419 GFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQS 478

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           +   + M  +GI  +      +  +  +   +E A+ L         + D + Y+S+L  
Sbjct: 479 MEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHA 538

Query: 594 LVRCQDEQNERHLMAILSATKHKAH 618
               +     + L   + A K ++H
Sbjct: 539 YANAKKLDKMKALSEDIYAEKIESH 563



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 179/361 (49%), Gaps = 7/361 (1%)

Query: 216 MLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           +++L D M +D    GI L    YN +I    +    + +   F ++  +  + D  ++N
Sbjct: 233 VVALVDSMKND----GIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFN 288

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            L+ ++    +  +A  + + ME G C     TY  +I S  K G L  A +L +EM+ +
Sbjct: 289 SLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVK 348

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
             +P    + +L+  + +AG++D ++  Y EM   G +P+   Y +LI+ +   GK    
Sbjct: 349 GIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEM 408

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           + ++D++R AGF P+   +  ++    ++G       +F +M+++G++P   TY  L+  
Sbjct: 409 MAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISS 468

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           ++  G  D +M++Y  M  AG+ P +STY A+L+ LA+    + A K+  EM+ +    D
Sbjct: 469 YSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPD 528

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK-NALYESAKPLL 572
            +S S +L  Y     +D        + +  I +++ +V+ L     K N L E+ K  L
Sbjct: 529 ELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFL 588

Query: 573 E 573
           E
Sbjct: 589 E 589



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 175/398 (43%), Gaps = 4/398 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L+ +   D  +  +DEM+ +  K  +     YN +I+      K       F 
Sbjct: 357 YTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLC---TYNALIKLHGVRGKFPEMMAVFD 413

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +  +    D  ++N L+ +F   GL  +   +++ M+K     +  TY  +I S ++ G
Sbjct: 414 DLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCG 473

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D ++++++ M E    P  + + +++ ++ + GR + + K++ EM+    RP    Y 
Sbjct: 474 LFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYS 533

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SL+ +YA A KLD    L +++       + GL   ++  ++K   L      F ++ R 
Sbjct: 534 SLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRR 593

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
                 +  + ++ ++  +  V    ++ + M  + +    +TY +L+ + ++    +  
Sbjct: 594 RCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKC 653

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             IL E+K+ G   D  S + ++  Y + G +  A R    M SSG+  +        +S
Sbjct: 654 ENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKS 713

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            + N+++E A  L+   V    K +   Y S+L    R
Sbjct: 714 YVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCR 751



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 163/390 (41%), Gaps = 36/390 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N ++    KA   + +    K++    C     +YN L++ ++  GL  +A E+ E ME
Sbjct: 287 FNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEME 346

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR-- 355
                 D  TY  +I  L ++G++DAAI  + EM     +P+   + +L+   G  G+  
Sbjct: 347 VKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFP 406

Query: 356 --------------------------------LDTSMK-VYMEMQGCGHRPSAPMYVSLI 382
                                           LD+ +  V+ EM+  G+ P    YVSLI
Sbjct: 407 EMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLI 466

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
            SY++ G  D ++ ++  M  AG  P+   +  ++ + A+ G+ + A  +F +ME     
Sbjct: 467 SSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCR 526

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   +YS LL  +A++ ++D    L   + +  +         L+ + +K   +    K 
Sbjct: 527 PDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKA 586

Query: 503 LLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
            LE+     S+D++  + ++ VY K+  V      L  M  S I  +      L     +
Sbjct: 587 FLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSR 646

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVL 591
               E  + +L     S A+ D   Y +++
Sbjct: 647 LGDCEKCENILTEIKSSGARPDRYSYNTMI 676



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 183/446 (41%), Gaps = 58/446 (13%)

Query: 89  WTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWG 148
           +T  I  LD +G +            G  D ++  G K      +A+ K+  V  ++   
Sbjct: 357 YTTLISGLDRAGKI--------DAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKF--- 405

Query: 149 PELETQLDKLQ---FVPKMVHITQALKVI--NDSDTSLSLFRWAKRQSWYVPGDECYVML 203
           PE+    D L+   FVP +V     L V   N  D+ +S      ++S YVP  + YV L
Sbjct: 406 PEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSL 465

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263
               +    FD  + ++  M+       IS    YN V+  LA+  + E +   F ++ +
Sbjct: 466 ISSYSRCGLFDQSMEIYKRMIEAGIYPDIS---TYNAVLSALARGGRWEQAEKLFAEMEN 522

Query: 264 SDCKIDTQSYNVLMTLFLN-------KGLPYKAF-EIYES-------------------- 295
            DC+ D  SY+ L+  + N       K L    + E  ES                    
Sbjct: 523 LDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSE 582

Query: 296 -------MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
                  + +  CSLD +    M+    K+  +    ++   MK  +   S   + SL+ 
Sbjct: 583 TEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMH 642

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
              + G  +    +  E++  G RP    Y ++I +Y + G++  A RL+ EM+ +G  P
Sbjct: 643 MYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIP 702

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +   + + ++S+  +   + A+ +   M   G  P   TY+ +L+ +   G++  A    
Sbjct: 703 DIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFL 762

Query: 469 NSMTSAGLRPGLSTYTA--LLTLLAK 492
           +++    L PG+S      LL LLA+
Sbjct: 763 SNLPQ--LHPGISKQEQQRLLELLAR 786


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 162/322 (50%), Gaps = 1/322 (0%)

Query: 235  FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              AYN +I  L KA   EM++  F K+ ++ C  D  +YN+ +      G   + F++YE
Sbjct: 788  LEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYE 847

Query: 295  SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
             M    C  +  T+ ++I  L KS  LD AI L+ ++   +F P+   +  L+D + K G
Sbjct: 848  EMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLG 907

Query: 355  RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            RL+ + + + EM   G  P+ P+Y  L+  + K G ++TA  L+  M   G RP+   ++
Sbjct: 908  RLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYS 967

Query: 415  MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++++     GK+D A+  F +++ +G  P    Y+ ++     S +V+ A+ L++ M + 
Sbjct: 968  IMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNR 1027

Query: 475  GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            G+ P L TY AL+  L    +V+ A K+  E++  G   +V   + L+  +   G+ D A
Sbjct: 1028 GITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRA 1087

Query: 534  LRWLRFMGSSGIRTNNFIVRQL 555
                + M   G R N     QL
Sbjct: 1088 YAVYKKMMVGGCRPNTGTFAQL 1109



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 116/490 (23%), Positives = 204/490 (41%), Gaps = 41/490 (8%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P  + Y  L   L + RD + ++ L  EM     +  I  F+     I+ L +A K++ +
Sbjct: 225 PSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTI---CIRILGRAGKIDEA 281

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           Y   K++ D+ C  D  +Y VL+    N G    A E++  M+      D  TY  ++  
Sbjct: 282 YGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDK 341

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG-------------------- 354
            +  G LDA  + + EM+   + P    F  L+D++ K G                    
Sbjct: 342 FSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPN 401

Query: 355 ---------------RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
                          RLD +++++  M+  G   +A  Y+  I+ Y K+G+   A++ ++
Sbjct: 402 LHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFE 461

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           +M+  G  PN       + S A+ G+L+ A   F  +++ G  P   TY+ L+  +  +G
Sbjct: 462 KMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAG 521

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           +VD A+KL + M   G  P +    +L+  L K   VD A K+   MK M  +  V   +
Sbjct: 522 RVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYN 581

Query: 520 VLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
            L+  + K+G V  A    + M +     N      L +   KN   + A  +L    E 
Sbjct: 582 TLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEM 641

Query: 579 AAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTG--PEQRKQPVL 636
               D++ Y +V+  L++         L   +    +  +  LC L  G   + R +   
Sbjct: 642 NCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAF 701

Query: 637 SFVREFFHGI 646
              +EF H +
Sbjct: 702 RVAKEFVHHV 711



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 185/434 (42%), Gaps = 10/434 (2%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
            + + LK I+D + + S F         +   E    + ++L   R  + M+ +F+ M  
Sbjct: 91  EVYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMVVVFNLMQK 150

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
              K  I+    Y  + + L     L  +    +K+      ++  SY  L+ L L  G 
Sbjct: 151 QIIKRSIN---TYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGF 207

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +A ++Y  M          TY  ++ +L K   ++  + L QEM+    RP+   F  
Sbjct: 208 CREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTI 267

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
            +  +G+AG++D +  +   M   G  P    Y  LI++   AGKL+ A  L+ +M+ + 
Sbjct: 268 CIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASS 327

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +P+   +  +++  +  G LD     +++ME  G+LP   T++ L++     G+VD A 
Sbjct: 328 HKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAF 387

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-- 523
              + M   G+ P L TY  L+  L +   +D A ++   M+++G     + + +L +  
Sbjct: 388 GTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLET-TAYTYILFIDY 446

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           Y K G    A++    M ++GI  N         S  +    E AK       +     D
Sbjct: 447 YGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPD 506

Query: 584 LVLYTSVLAHLVRC 597
            + Y      L+RC
Sbjct: 507 AITYNI----LMRC 516



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 146/330 (44%), Gaps = 17/330 (5%)

Query: 139 VEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDE 198
           ++V+ +    P L T    +  + ++  + +AL++ N S  SL L       + Y     
Sbjct: 390 LDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFN-SMESLGL-----ETTAYT---- 439

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMSYCC 257
            Y++  D   +S +    +  F++M      NGI     A N  +  LA+  +LE +   
Sbjct: 440 -YILFIDYYGKSGESGKAIKTFEKM----KTNGIVPNIVACNASLYSLAEQGRLEEAKEF 494

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           F  +       D  +YN+LM  +   G    A ++   ME+  C  +      +I +L K
Sbjct: 495 FNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYK 554

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           + R+D A K+FQ MKE    P+   + +L+  +GK GR+  +  ++  M      P+   
Sbjct: 555 ADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTIS 614

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           + +L++   K G++D AL++   M      P+   +  +I    K  +++ A  +F  M+
Sbjct: 615 FNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMK 674

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           +  + P   T   LL      G+++ A ++
Sbjct: 675 KVIY-PDYVTLCTLLPGVIKDGRIEDAFRV 703



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 36/194 (18%)

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A      M + GF+    +Y  L+ +   SG    A+K+Y  M S G++P L TY
Sbjct: 171 GGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTY 230

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
           +AL+  L KR+ ++    +L EM+++G   ++    + + +  + G +D A   L+ M  
Sbjct: 231 SALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDD 290

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G                                      D+V YT ++  L       N
Sbjct: 291 AG-----------------------------------CGPDVVTYTVLIDALCNAGKLNN 315

Query: 603 ERHLMAILSATKHK 616
            + L   + A+ HK
Sbjct: 316 AKELFLKMKASSHK 329



 Score = 39.3 bits (90), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 167  ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
            +   L ++   D +L  F   K  S   P   CY ++ + L  S+  +  LSLFDEM   
Sbjct: 969  MVDCLCMVGKVDDALHYFEELK-LSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEM--- 1024

Query: 227  SSKNGIS--LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
                GI+  L++ YN +I  L  A  +E +   ++++     + +  +YN L+      G
Sbjct: 1025 -RNRGITPDLYT-YNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSG 1082

Query: 285  LPYKAFEIYESMEKGECSLDGSTY 308
             P +A+ +Y+ M  G C  +  T+
Sbjct: 1083 NPDRAYAVYKKMMVGGCRPNTGTF 1106


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 163/322 (50%), Gaps = 1/322 (0%)

Query: 235  FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              +YN +I+        EM++  F ++ ++ C  D  +YN+L+      G   + FE+YE
Sbjct: 790  LESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYE 849

Query: 295  SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
             M    C  +  T+ ++I +L KS  LD A+ LF ++   +F P+   +  L+D + K+G
Sbjct: 850  QMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSG 909

Query: 355  RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            RL+ + +++ EM   G RP+  +Y  LI  + K G ++TA  L+  M   G RP+   +T
Sbjct: 910  RLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYT 969

Query: 415  MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
             ++    ++G++D A+  F  +++ G       Y+ +++    S +++ A+ LY+ M S 
Sbjct: 970  SLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSR 1029

Query: 475  GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHA 533
            G+ P L TY +L+  L    +V+ A K+  E++ +G   +V   + L+  Y   G+ D A
Sbjct: 1030 GINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSA 1089

Query: 534  LRWLRFMGSSGIRTNNFIVRQL 555
                + M   G   N     QL
Sbjct: 1090 YAVYKRMMVGGCSPNTGTFAQL 1111



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 183/402 (45%), Gaps = 4/402 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +   VL  +   D    +   M  D     +     Y  +I  L  A KL+ +
Sbjct: 262 PNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVV---TYTVLIDALCTAGKLDDA 318

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F K+  S  K D  +Y  ++  F + G   +  E +  ME    + D  T+ +++ +
Sbjct: 319 MELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNA 378

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+G +D A  L   M+++   P+ + + +L+  + +  RLD ++ ++  M+  G  P+
Sbjct: 379 LCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPT 438

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           A  Y+  I+ Y K+G+ D AL  +++M+I G  PN       + S A+ G+L  A  IF 
Sbjct: 439 AYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFN 498

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            ++  G  P   TY+ +++ ++ +GQVD A++L + M+     P +    +L+  L K  
Sbjct: 499 RLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAG 558

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            VD A K+   +K M  +  V   + L+  + K+G V  A+     M  +G   N     
Sbjct: 559 RVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFN 618

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            + +   KN   + A  +L          D++ + +++  LV
Sbjct: 619 TILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLV 660



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 177/397 (44%), Gaps = 4/397 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L ++  MV +  K  +  FSA   ++    K    E      +++     K +  +Y + 
Sbjct: 214 LEMYRRMVLEGLKPSLKTFSA---LMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTIC 270

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           + +    G   +A  I + ME   C  D  TY ++I +L  +G+LD A++LF +MK  + 
Sbjct: 271 IRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSH 330

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P    + +++D     G L    + + EM+  G+ P    +  L+ +  KAG +D A  
Sbjct: 331 KPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFH 390

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L D MR  G  PN   +  +I    +  +LD A+ +F +ME  G +PT  TY   ++ + 
Sbjct: 391 LLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYG 450

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            SG+ D A++ +  M   G+ P +    A L  LA+   +  A  I   +K+ G + D  
Sbjct: 451 KSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSV 510

Query: 517 ASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
             +++M  Y K G VD A+  L  M  +    +  ++  L  +  K    + A  +    
Sbjct: 511 TYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRL 570

Query: 576 VESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
            +      +V Y +++A L +    Q    L A ++ 
Sbjct: 571 KDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTG 607



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/467 (21%), Positives = 200/467 (42%), Gaps = 39/467 (8%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
            +   L  I D   + S F       + V   E    + ++L   R    M+ +F+ M +
Sbjct: 93  EVMAVLNSILDPTDAFSYFNSVAEMPFVVHTTETCNHMLEILRIHRRVGDMVVVFNLMQN 152

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
              K  ++    Y  + + L     L  +   F K+ ++   ++  SYN L+ L L  GL
Sbjct: 153 QIIKRDLN---TYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGL 209

Query: 286 PYKAFEIY-----------------------------------ESMEKGECSLDGSTYEL 310
             +A E+Y                                   E ME      +  TY +
Sbjct: 210 CREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTI 269

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
            I  L ++GR+D A ++ + M++    P    +  L+D++  AG+LD +M+++++M+   
Sbjct: 270 CIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASS 329

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           H+P    Y+++++ ++  G L      W EM   G+ P+   FT+++ +  K+G +D A 
Sbjct: 330 HKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAF 389

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +   M + G LP   TY+ L+       ++D A+ L+N+M + G+ P   TY   +   
Sbjct: 390 HLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFY 449

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNN 549
            K    D A +   +MK  G + ++ A +  +  + + G +  A      + S+G+  ++
Sbjct: 450 GKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDS 509

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                + +   K    + A  LL    E+  + D+++  S++  L +
Sbjct: 510 VTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYK 556



 Score =  106 bits (264), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 145/329 (44%), Gaps = 2/329 (0%)

Query: 268  IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            +D + +  LM   L +    K     + +  G    DGS    +I  L K  +   A  +
Sbjct: 717  VDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSV 776

Query: 328  FQEM-KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
            F    KE   +P+   +  L++        + +  ++ EM+  G  P    Y  L++++ 
Sbjct: 777  FIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHG 836

Query: 387  KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
            K+GK++    L+++M  +  +PN     +II +  KS  LD A+ +F D+    F PTP 
Sbjct: 837  KSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPC 896

Query: 447  TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            TY  LL+    SG+++ A +L+  M   G RP  + Y  L+    K   V+ A ++   M
Sbjct: 897  TYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRM 956

Query: 507  KTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
               G   D+ S + ++    + G VD AL +   +  +G+  ++     + +   ++   
Sbjct: 957  VREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRI 1016

Query: 566  ESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            E A  L +         DL  Y S++ +L
Sbjct: 1017 EEALTLYDEMQSRGINPDLFTYNSLILNL 1045



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 170/386 (44%), Gaps = 11/386 (2%)

Query: 186 WAKRQS-WYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQ 243
           W++ ++  Y P    + +L + L ++ + D    L D M     K G+      YN +I 
Sbjct: 357 WSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVM----RKQGVLPNLHTYNTLIS 412

Query: 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303
            L + ++L+ +   F  +          +Y + +  +   G   KA E +E M+    + 
Sbjct: 413 GLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAP 472

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           +       + SLA+ GRL  A  +F  +K     P    +  ++    KAG++D ++++ 
Sbjct: 473 NIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELL 532

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +M      P   +  SLI +  KAG++D A +++  ++     P    +  +I    K 
Sbjct: 533 SDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKE 592

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G++  AM +F  M   G  P   T++ +L+    + +VD A+K+   MT+    P + T+
Sbjct: 593 GQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTF 652

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLR-FMGS 542
             ++  L   K V  A  +  +MK M     V+   +L   +K+G ++ A +    F+  
Sbjct: 653 NTIIHGLVIEKRVSDAIWLFHQMKKMLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHR 712

Query: 543 SGIRTNNFIVRQLFESCMKNALYESA 568
            G+    ++ R+ +E  M   L ++ 
Sbjct: 713 LGV----YVDRRFWEDLMGGILTQAG 734



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 162/418 (38%), Gaps = 45/418 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L K  +++ +   F  +  + C  +T ++N ++           A ++   M
Sbjct: 581 TYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKM 640

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D  T+  +I  L    R+  AI LF +MK +   P      +L+  + K G +
Sbjct: 641 TTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMK-KMLTPDCVTLCTLLPGVVKNGLM 699

Query: 357 DTSMK----------VYME-------MQG------------------CGHR-PSAPMYVS 380
           + + K          VY++       M G                  CG       + + 
Sbjct: 700 EDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRVCKDGSVLMP 759

Query: 381 LIESYAKAGKLDTA----LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +I+   K  +   A    +R   E+   G +P    +  +IE        ++A ++FT+M
Sbjct: 760 IIKVLCKHKQALVAQSVFIRFTKEL---GVKPTLESYNFLIEGFLGVHNDEMAWNLFTEM 816

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           + AG  P   TY+ LL+ H  SG+++   +LY  M  +  +P   T+  ++  L K   +
Sbjct: 817 KNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSL 876

Query: 497 DVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           D A  +  ++ +  +S    +   +L   +K G ++ A      M   G R NN I   L
Sbjct: 877 DKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNIL 936

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
                K     +A  L +  V    + DL  YTS++  L       +  H    L  T
Sbjct: 937 INGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQT 994



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/381 (20%), Positives = 151/381 (39%), Gaps = 11/381 (2%)

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R+   + +F  M+ +  +   N +  +   +   G L  +   + +M+  G   +A  Y 
Sbjct: 139 RVGDMVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYN 198

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            LI    ++G    AL ++  M + G +P+   F+ ++ +  K    +   S+  +ME  
Sbjct: 199 GLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESL 258

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   TY+  + +   +G++D A ++   M   G  P + TYT L+  L     +D A
Sbjct: 259 GLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDA 318

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            ++ ++MK   +  D V+   +L  +   G +     +   M + G   +      L  +
Sbjct: 319 MELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNA 378

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL---MAILSATKH 615
             K    + A  LL+   +     +L  Y ++++ L+R     +   L   M  L     
Sbjct: 379 LCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPT 438

Query: 616 KAHAFLCGLFTGPEQRKQPVL-SFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINR 674
                L   F G   R    L +F +    GI   +         N  L  L  MG++  
Sbjct: 439 AYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVA------CNASLYSLAEMGRLRE 492

Query: 675 ARCVWKVAYENKLFPKAIVFD 695
           A+ ++     N L P ++ ++
Sbjct: 493 AKVIFNRLKSNGLAPDSVTYN 513


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 176/362 (48%), Gaps = 1/362 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I  LA + +   +   F+++  S  K  T++YN L+  ++  G    A  +   MEK  
Sbjct: 310 IISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRG 369

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            S D  TY L+I +   +GR ++A  + +EM+  + +P+  +F+ L+      G    + 
Sbjct: 370 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTF 429

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +V  EM+  G +P    Y  +I+++ K   LD A+  +D M   G  P+   +  +I+ H
Sbjct: 430 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 489

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K G+  +A  +F  MER G LP  +TY+ ++  +    + D   +L   M S G+ P +
Sbjct: 490 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 549

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRF 539
            T+T L+ +  K    + A + L EMK++G     +  + L+  Y + G  + A+   R 
Sbjct: 550 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 609

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           M S G++ +   +  L  +  ++     A  +L+   E+  K D+V YT+++  L+R   
Sbjct: 610 MTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDK 669

Query: 600 EQ 601
            Q
Sbjct: 670 FQ 671



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 5/335 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAK 247
           RQS   P    Y  L     ++    G L   + MV +  K G+S     Y+ +I     
Sbjct: 331 RQSGIKPRTRAYNALLKGYVKT----GPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN 386

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
           A + E +    K++   D + ++  ++ L+  F ++G   K F++ + M+      D   
Sbjct: 387 AGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQF 446

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y ++I +  K   LD A+  F  M      P    + +L+D   K GR   + +++  M+
Sbjct: 447 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAME 506

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P A  Y  +I SY    + D   RL  +M+  G  PN    T +++ + KSG+ +
Sbjct: 507 RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFN 566

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+    +M+  G  P+ + Y+ L+  +A  G  + A+  +  MTS GL+P L    +L+
Sbjct: 567 DAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLI 626

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
               + +    A  +L  MK  G   DV     LM
Sbjct: 627 NAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLM 661



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 114/241 (47%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN VI    K + L+ +   F ++L    + D  ++N L+      G    A E++E+ME
Sbjct: 447 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAME 506

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C    +TY +MI S     R D   +L  +MK +   P+     +LVD  GK+GR +
Sbjct: 507 RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFN 566

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +++   EM+  G +PS+ MY +LI +YA+ G  + A+  +  M   G +P+      +I
Sbjct: 567 DAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLI 626

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  +  +   A ++   M+  G  P   TY+ L++      +      +Y  M  +G +
Sbjct: 627 NAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCK 686

Query: 478 P 478
           P
Sbjct: 687 P 687



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 157/339 (46%), Gaps = 8/339 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  L +++KL   Y  F  +L     +   +YN L+          KA  +   M 
Sbjct: 170 YSILIHALGRSEKL---YEAF--LLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMR 224

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAA--IKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +     D   Y L+I SL +S ++D+   ++L++E++         +   ++    K+G 
Sbjct: 225 QDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGD 284

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              ++++    Q  G        VS+I + A +G+   A  L++E+R +G +P    +  
Sbjct: 285 PSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNA 344

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++ + K+G L  A S+ ++ME+ G  P   TYS L++ + ++G+ +SA  +   M +  
Sbjct: 345 LLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGD 404

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           ++P    ++ LL     R       ++L EMK++G   D    +V++  + K   +DHA+
Sbjct: 405 VQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAM 464

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
                M S GI  +      L +   K+  +  A+ + E
Sbjct: 465 TTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFE 503


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 211/437 (48%), Gaps = 11/437 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVL---NESRDFDGMLSLFDEM 223
           I Q+L   N SD+S+    +A+ +S  +  D    +L D++    +S D +  +S F  M
Sbjct: 225 IIQSLTRTNKSDSSMLQKIYAEIESDKIELDG--QLLNDIIVGFAKSGDVNRAMS-FLAM 281

Query: 224 VHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           V     NG+S  +A    VI  L  A + E +   F+++ +      T++YN L+  ++ 
Sbjct: 282 VQG---NGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVK 338

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
            G    A  I   ME+   S D  TY L+I + A +GR ++A  + +EM+    RP+  +
Sbjct: 339 TGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYV 398

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           F+ ++ S    G+   S +V  EM+  G  P    Y  +I+++ K   LD AL  +D MR
Sbjct: 399 FSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMR 458

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
           + G +P+   +  +I+ H KSG  + A  +F  M+ +G  P  +TY+ ++       + +
Sbjct: 459 MEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWE 518

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
               L   M S GL   + TYT L+ +  +      A + L  MK++G     +  + L+
Sbjct: 519 DVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALI 578

Query: 523 -VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             Y + G  + A+   R M + G++ +  ++  L  +  ++     A  +L+   E+  K
Sbjct: 579 NAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLK 638

Query: 582 VDLVLYTSVLAHLVRCQ 598
            D+V YT+++  L+R +
Sbjct: 639 PDVVTYTTLMKALIRVE 655



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 115/241 (47%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    K + L+ +   F ++     + D  ++N L+      G   KA E++E+M+
Sbjct: 434 YNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQ 493

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  CS   +TY +MI S  +  R +    L  +M+ +    +   + +LVD  G++GR  
Sbjct: 494 ESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFK 553

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +++    M+  G +PS+ MY +LI +YA+ G  + A+  +  MR  G +P+  +   +I
Sbjct: 554 DAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLI 613

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  +  +   A S+   M+     P   TY+ L++      + D    +Y  MT +G  
Sbjct: 614 NAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCT 673

Query: 478 P 478
           P
Sbjct: 674 P 674



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 141/332 (42%), Gaps = 3/332 (0%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +S + P +  Y +L D    +  ++    +  EM     +    +FS   R++       
Sbjct: 354 RSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFS---RILASYRDRG 410

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           K + S+   +++ +S    D   YNV++  F        A   ++ M       D  T+ 
Sbjct: 411 KWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWN 470

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I    KSG  + A +LF+ M+E    P    +  +++S G+  R +    +  +MQ  
Sbjct: 471 TLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQ 530

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G   +   Y +L++ Y ++G+   A+   + M+  G +P+  ++  +I ++A+ G  + A
Sbjct: 531 GLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQA 590

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           ++ F  M   G  P+    + L+       +   A  +   M    L+P + TYT L+  
Sbjct: 591 INAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKA 650

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           L + +  D    +  EM   G + D  A  +L
Sbjct: 651 LIRVEKFDKVPAVYEEMTLSGCTPDRKARAML 682


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 149/598 (24%), Positives = 249/598 (41%), Gaps = 64/598 (10%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
           D    L +F+EM     K G+      +N +I   ++    E S   F ++     + D 
Sbjct: 285 DLKKALDIFEEM----QKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDI 340

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            +YN L+      G    A  I  SM     S +  TY  MI    K G  + AI L+ +
Sbjct: 341 FTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHD 400

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           MKE   RP    + +L+D   K GR D ++    +M+  G +     Y +LI++Y K GK
Sbjct: 401 MKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGK 460

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
              A  L+D+M+  G  PN   ++ +I++++K+G    A SIF + +RAG  P    YS 
Sbjct: 461 YKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSS 520

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L++     G V+ A+ L   MT AG++P + TY +L+    +   VD             
Sbjct: 521 LIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVD------------- 567

Query: 511 YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF--ESCMKNALYESA 568
              +V A+   M              +      G R+   I + L   ++   +    +A
Sbjct: 568 ---NVEAAKGNMP-------------INVFNKVGDRSTEIICKTLTSQQNANDHTGVLAA 611

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL----SATKHKAHAFLCGL 624
             +     +   K ++V ++++L    RC   Q    L+  +    S     AH  L GL
Sbjct: 612 VSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASVLLEQMRFFDSWVYGIAHGLLMGL 671

Query: 625 FTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYE 684
                 R+   +   R F      +   GAA  F N L + L   GQ   A+ V   A  
Sbjct: 672 ------REHVWVEAQRLFDEIARMDYATGAA--FYNALTDVLWHFGQRQGAQEVVVAAKR 723

Query: 685 NKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYG-VVPRRIKLVTG- 742
            +++  A  +     + LD+  +SVGAA  A++H      + +++ G  +PR + ++TG 
Sbjct: 724 RQVWENAW-WRSEQQFCLDLHLMSVGAAQ-AMLHVWLLDLRALVWDGHALPRVLSILTGW 781

Query: 743 ---------PTLKIVIAQMLSSVESPFEVSKV---VLRAPGDSVMEWFKKPIVQQFLL 788
                     T+K  +   L  +++PF+V +     L   G  V  W   P   + L+
Sbjct: 782 GKHSKVAGFSTVKRAVESRLLEIKAPFQVGRYNEGRLVCAGHIVRAWLGDPRTSKLLM 839



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 202/424 (47%), Gaps = 15/424 (3%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           ++ + T+L L +W+ +    + G E +  L   L    +++  L  ++ MV         
Sbjct: 143 MSGNSTALLLEKWSHQ----LVGLEDFPYLLRELGNRGEWERALQGYEWMVQQGH----- 193

Query: 234 LFSAYNRV----IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
           L S ++++    I  L +  K+E++   F +   +    +  +Y+ +++ +   G   +A
Sbjct: 194 LRSEWSKLASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREA 253

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSG-RLDAAIKLFQEMKERNFRPSFNIFASLVD 348
            +++++M+K  C  +  TY  +I +  K G  L  A+ +F+EM++    P    F SL+ 
Sbjct: 254 LKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIA 313

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
              +    + S +V+ EMQ  G       Y +LI++  K G+++ A  +   MR+    P
Sbjct: 314 VCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISP 373

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           N   ++ +I+ + K G  + A+ ++ DM+ +G  P   +Y+ L++++A  G+ D A+   
Sbjct: 374 NVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTAC 433

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKD 527
             M   GL+  + TY AL+    K+     AA +  +MK  G   +V + S ++  Y K 
Sbjct: 434 KDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKA 493

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           G    A         +G++ +  +   L +SC K  L E A  LL+   ++  + ++V Y
Sbjct: 494 GMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTY 553

Query: 588 TSVL 591
            S++
Sbjct: 554 NSLI 557



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 150/311 (48%), Gaps = 2/311 (0%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A +++   +K     +   Y  M+ +  +SGR   A+K+FQ MK+   +P+   + +++D
Sbjct: 218 ALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIID 277

Query: 349 SMGKAG-RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           + GK G  L  ++ ++ EMQ  G  P    + SLI   ++    + + R++ EM+  G  
Sbjct: 278 ACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIE 337

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
            +   +  +I++  K G++++A SI + M      P   TYS +++ +   G  + A+ L
Sbjct: 338 QDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGL 397

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIK 526
           Y+ M  +G+RP   +Y  L+ + AK    D A     +M+ +G   DV   + L+  Y K
Sbjct: 398 YHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGK 457

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
            G    A      M + G+  N      L ++  K  +++ A  +   +  +  K D+VL
Sbjct: 458 QGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVL 517

Query: 587 YTSVLAHLVRC 597
           Y+S++    +C
Sbjct: 518 YSSLIDSCCKC 528



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 98/256 (38%), Gaps = 45/256 (17%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           ++S   P    Y  L D+  +   FD  L+   +M     K  +     YN +I    K 
Sbjct: 402 KESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVV---TYNALIDAYGKQ 458

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K + +   F K+       +  +Y+ L+  +   G+   A  I+   ++     D   Y
Sbjct: 459 GKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLY 518

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT---------- 358
             +I S  K G ++ A+ L QEM +   +P+   + SL+D+ G+ G++D           
Sbjct: 519 SSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPI 578

Query: 359 --------------------------------SMKVYMEMQGCGHRPSAPMYVSLIESYA 386
                                           ++ V+ EMQ  G +P+   + +++ + +
Sbjct: 579 NVFNKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACS 638

Query: 387 KAGKLDTALRLWDEMR 402
           +   L  A  L ++MR
Sbjct: 639 RCSSLQEASVLLEQMR 654


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 190/388 (48%), Gaps = 9/388 (2%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
           D D  L LFD+M    ++NGI   +  Y  +I++  K   ++ +Y  + ++ + D     
Sbjct: 344 DLDSALELFDKM----NENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTV 399

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS-TYELMIPSLAKSGRLDAAIKLFQ 329
            + N L+  +L    P +A ++++  E   C +    TY  ++  L K G++  A  +++
Sbjct: 400 FNVNSLIRGYLKARSPEEASKLFD--EAVACGIANVFTYNSLLSWLCKEGKMSEACSIWE 457

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           +M  +  RPS   + +++    + G +D++  V++EM   G +P+   Y  L++ Y K G
Sbjct: 458 KMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKG 517

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
             + A  L+D MR     P+     +II    K+G+   +      + + GF+PT  TY+
Sbjct: 518 DTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYN 577

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
           C+++     G V+SA+ +Y  M   G+ P + TYT L+    K   +D+A K++ EMK  
Sbjct: 578 CIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNK 637

Query: 510 GYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G  +DV+    L+  + + G + +A + L  +   G+  N  +   +     K    E+A
Sbjct: 638 GIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAA 697

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L +  +      DL +YT++++ L++
Sbjct: 698 LHLHKRMINEGIPCDLQIYTTLISGLLK 725



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 163/352 (46%), Gaps = 4/352 (1%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           S++++MV    +  +    +YN +I    +   ++ +   F ++L+   K +  +Y+VLM
Sbjct: 454 SIWEKMVRKGVRPSVV---SYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLM 510

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             +  KG    AF +Y+ M     +    T  ++I  L K+GR   +    +++ +  F 
Sbjct: 511 DGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFI 570

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P+   +  ++D   K G +++++ VY EM   G  P+   Y +LI  + K+  +D AL++
Sbjct: 571 PTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKV 630

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
            DEM+  G   +  ++  +I+   + G +  A  + ++++  G  P    YS ++     
Sbjct: 631 MDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRK 690

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
              +++A+ L+  M + G+   L  YT L++ L K   +  A+++  EM   G   D+  
Sbjct: 691 LQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLIT 750

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
             VL+  +   G +++A + L  M    +    FI   L     K    + A
Sbjct: 751 YSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEA 802



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 184/428 (42%), Gaps = 6/428 (1%)

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243
           FR AK +   +     Y ++ + + +  D    L L  EM     K  +     + RVI 
Sbjct: 247 FREAKNKGVELDA-RAYSIVIEAVCKKPDSVAALGLLREM---RDKGWVPHEVIFTRVIG 302

Query: 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303
              K  K+  +     ++L     ++      LM  +  +G    A E+++ M +     
Sbjct: 303 VCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICP 362

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           +  TY ++I    K+G +D A +++ +MK ++  P+     SL+    KA   + + K++
Sbjct: 363 NNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLF 422

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            E   CG   +   Y SL+    K GK+  A  +W++M   G RP+   +  +I  H + 
Sbjct: 423 DEAVACGI-ANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQ 481

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G +D A  +F +M   G  P   TYS L++ +   G  + A  LY+ M    + P   T 
Sbjct: 482 GDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTC 541

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGY-SVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542
             ++  L K      +   L ++   G+    ++ + ++  ++K+GSV+ AL     M  
Sbjct: 542 NIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCK 601

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
            G+  N F    L     K+   + A  +++       ++D+ +Y +++    R  D  N
Sbjct: 602 IGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVN 661

Query: 603 ERHLMAIL 610
              L++ L
Sbjct: 662 ASQLLSEL 669



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 152/332 (45%), Gaps = 4/332 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L D   +  D +    L+D M  ++     S F+  N +I  L KA +   S    K
Sbjct: 506 YSVLMDGYFKKGDTEYAFGLYDRMRGENI--APSDFTC-NIIINGLCKAGRTSESQDRLK 562

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K++         +YN ++  F+ +G    A  +Y  M K   S +  TY  +I    KS 
Sbjct: 563 KLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSN 622

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            +D A+K+  EMK +       ++ +L+D   + G +  + ++  E+Q  G  P+  +Y 
Sbjct: 623 NMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYS 682

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           S+I  + K   ++ AL L   M   G   +  ++T +I    K GKL  A  ++ +M   
Sbjct: 683 SMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAK 742

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G +P   TYS L+    + GQ+++A K+   M    + P +  Y  L+T   K   +  A
Sbjct: 743 GIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEA 802

Query: 500 AKILLEMKTMGYSVDVSASDVLMV-YIKDGSV 530
            ++  EM   G   D +  D+L+   +KDG++
Sbjct: 803 FRLHNEMLDKGLVPDDTTYDILVNGKVKDGNL 834



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/455 (21%), Positives = 195/455 (42%), Gaps = 28/455 (6%)

Query: 160 FVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGML-S 218
           F+ +  +I   L   ND  ++LS F WA ++   +   +   +L  +L +S +  G   +
Sbjct: 61  FLTQTQYIDTLLNHQNDPQSALSYFTWASQKRGLIKSVDALCVLLHILTKSTETCGKARN 120

Query: 219 LFDEMVHDSSKNGISL-------------FSAYNRVIQYL----AKADKLEMSYCCFKKV 261
           L +    D      S+             F + +RV  YL     K  ++  +  CF  +
Sbjct: 121 LLNRFASDDWGPVPSVVVARLIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSL 180

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           ++ D        N+ ++  +   +  +A ++Y  M       D +T  +MI +  + G+L
Sbjct: 181 IEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKL 240

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           + A   F+E K +        ++ +++++ K      ++ +  EM+  G  P   ++  +
Sbjct: 241 EEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRV 300

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I    K GK+  A+++  EM   G   N  + T +++ + K G LD A+ +F  M   G 
Sbjct: 301 IGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGI 360

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   TY+ ++E    +G +D A ++YN M +  + P +    +L+    K +  + A+K
Sbjct: 361 CPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASK 420

Query: 502 ILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT-----NNFIVRQLF 556
           +  E    G +   + + +L    K+G +  A      M   G+R      NN I+    
Sbjct: 421 LFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQ 480

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +  M     +SA  +    +E   K +L+ Y+ ++
Sbjct: 481 QGDM-----DSANGVFVEMLEKGLKPNLITYSVLM 510



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 119/277 (42%), Gaps = 7/277 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAK 247
           Q  ++P    Y  + D   +    +  L+++ EM     K G+S  +F+ Y  +I    K
Sbjct: 566 QEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMC----KIGVSPNVFT-YTNLINGFCK 620

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
           ++ ++++     ++ +   ++D   Y  L+  F  KG    A ++   +++   S +   
Sbjct: 621 SNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVV 680

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  MI    K   ++AA+ L + M          I+ +L+  + K G+L  + ++Y EM 
Sbjct: 681 YSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEML 740

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P    Y  LI      G+L+ A ++ ++M      P   ++  +I  H K G L 
Sbjct: 741 AKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQ 800

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
            A  +  +M   G +P  +TY  L+      G + S 
Sbjct: 801 EAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNLFSG 837


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 183/381 (48%), Gaps = 3/381 (0%)

Query: 214 DGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           +G +S+   +++D  K+G  L   AY  +I       +   +   FKK+ +  CK    +
Sbjct: 11  EGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLIT 70

Query: 273 YNVLMTLFLNKGLPYKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           YNV++ ++   G+P+   + ++E M+      D  TY  +I    +    + A  +F++M
Sbjct: 71  YNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDM 130

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           K   F P    + +L+D  GK+ R   +M+V  EM+  G  PS   Y SLI +YA+ G L
Sbjct: 131 KSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLL 190

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A+ L ++M   G   +   +T ++    ++GK + AM +F +M  AG  P   T++ L
Sbjct: 191 KEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNAL 250

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++MH + G+    MK++  + ++   P + T+  LL +  +  +    + +  EMK  G+
Sbjct: 251 IKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF 310

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             +    + L+  Y + GS D A+   + M  +GI  +      +  +  +  L+E ++ 
Sbjct: 311 VPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEK 370

Query: 571 LLETYVESAAKVDLVLYTSVL 591
           +     +   K + + Y S+L
Sbjct: 371 IFAEMKDGRCKPNELTYCSLL 391



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 186/406 (45%), Gaps = 6/406 (1%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           +  + +F EM     K  I  F+A   +I+      K       F+++ +S C  D  ++
Sbjct: 226 ESAMRVFAEMRAAGCKPNICTFNA---LIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTW 282

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N L+ +F   G+  +   +++ M++     +  TY  +I + ++ G  D A+ +++ M E
Sbjct: 283 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLE 342

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P  + + +++ ++ + G  + S K++ EM+    +P+   Y SL+ +YA   ++  
Sbjct: 343 AGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGR 402

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
            L L +E+      P+  L   ++  ++K   L  A   F +++R GF P  ST + +L 
Sbjct: 403 MLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLS 462

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
           ++          ++ N M  +G  P L+TY +L+ + ++ +  + + ++L E+   G   
Sbjct: 463 IYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKP 522

Query: 514 D-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           D +S + V+  Y ++G +  A R    M  SG+  +         S   ++++E A  ++
Sbjct: 523 DTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVV 582

Query: 573 ETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAH 618
              ++   K +   Y SV+     C+    +  +M I S  +   H
Sbjct: 583 RYMIKHGCKPNQNTYNSVVDGY--CKHNHRDDAIMFISSLHELDPH 626



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 173/406 (42%), Gaps = 6/406 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKL 251
           +VP    Y  L DV  +SR     + +  EM      NG S     YN +I   A+   L
Sbjct: 135 FVPDKVTYNALLDVYGKSRRTKEAMEVLREM----EVNGCSPSIVTYNSLISAYARDGLL 190

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           + +     ++++    +D  +Y  L++ F+  G    A  ++  M    C  +  T+  +
Sbjct: 191 KEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNAL 250

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I      G+    +K+F+E+K     P    + +L+   G+ G       V+ EM+  G 
Sbjct: 251 IKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF 310

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P    Y +LI +Y++ G  D A+ ++  M  AG  P+   +  ++ + A+ G  + +  
Sbjct: 311 VPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEK 370

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           IF +M+     P   TY  LL  +A+  ++   + L   + S  + P       L+ + +
Sbjct: 371 IFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNS 430

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           K  L+  A    LE+K  G+S D+S  + ++ +Y +          L FM  SG   +  
Sbjct: 431 KCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLA 490

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               L     ++  +E ++ +L+  +    K D + Y +V+    R
Sbjct: 491 TYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCR 536



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 135/285 (47%), Gaps = 2/285 (0%)

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           ++I  L K G++  A  L  ++ +  F      + SL+ +    GR   ++ V+ +M+  
Sbjct: 3   VIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALR-LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           G +P+   Y  ++  Y K G     ++ L++ M+ AG  P+   +  +I    +    + 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A ++F DM+  GF+P   TY+ LL+++  S +   AM++   M   G  P + TY +L++
Sbjct: 123 AAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLIS 182

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
             A+  L+  A ++  +M   G ++DV + + +L  +++ G  + A+R    M ++G + 
Sbjct: 183 AYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKP 242

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           N      L +       +     + E    S    D+V + ++LA
Sbjct: 243 NICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLA 287



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 150/359 (41%), Gaps = 37/359 (10%)

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           V++++   +G    A  +   + K    LD   Y  +I +   +GR   A+ +F++M+E 
Sbjct: 3   VIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 335 NFRPS-----------------FNIFASLVDSMGKAGRL-------------------DT 358
             +P+                 +N    L + M  AG L                   + 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  V+ +M+  G  P    Y +L++ Y K+ +   A+ +  EM + G  P+   +  +I 
Sbjct: 123 AAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLIS 182

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           ++A+ G L  AM +   M   G      TY+ LL     +G+ +SAM+++  M +AG +P
Sbjct: 183 AYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKP 242

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL 537
            + T+ AL+ +   R       K+  E+K      D V+ + +L V+ ++G         
Sbjct: 243 NICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVF 302

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           + M  +G          L  +  +   ++ A  + +  +E+    DL  Y +VLA L R
Sbjct: 303 KEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALAR 361



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 151/343 (44%), Gaps = 9/343 (2%)

Query: 161 VPKMVHITQALKVI--NDSDTSLS-LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGML 217
           VP +V     L V   N  D+ +S +F+  KR + +VP  + Y  L    +    FD  +
Sbjct: 276 VPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERDTYNTLISAYSRCGSFDQAM 334

Query: 218 SLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
            ++  M+    + GI+   S YN V+  LA+    E S   F ++ D  CK +  +Y  L
Sbjct: 335 DIYKRML----EAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSL 390

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  + N     +   + E +  G         + ++   +K   L  A   F E+K + F
Sbjct: 391 LHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGF 450

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P  +   +++   G+      + ++   M   G  PS   Y SL+  ++++   + +  
Sbjct: 451 SPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEE 510

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +  E+   G +P+   +  +I ++ ++G++  A  IF++M  +G +P   TY+  +  +A
Sbjct: 511 VLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYA 570

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           +    + A+ +   M   G +P  +TY +++    K    D A
Sbjct: 571 ADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDA 613



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 2/250 (0%)

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
           A ++  +GK G++  +  +  ++   G       Y SLI +    G+   A+ ++ +M  
Sbjct: 2   AVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 404 AGFRPNFGLFTMIIESHAKSG-KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
            G +P    + +I+  + K G   +    +F  M+ AG LP   TY+ L+         +
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHE 121

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVL 521
            A  ++  M S G  P   TY ALL +  K +    A ++L EM+  G S   V+ + ++
Sbjct: 122 EAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLI 181

Query: 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             Y +DG +  A+     M   GI  + F    L    ++    ESA  +      +  K
Sbjct: 182 SAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCK 241

Query: 582 VDLVLYTSVL 591
            ++  + +++
Sbjct: 242 PNICTFNALI 251


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 125/539 (23%), Positives = 223/539 (41%), Gaps = 88/539 (16%)

Query: 137 KIVEVVNRWKWGPELETQLD--KLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           + + ++  +KWG + E  ++  KL+   ++VH  Q L +  +    +  F+WA ++  + 
Sbjct: 64  RFIRILKIFKWGSDAEKAIEVLKLKVDHRLVH--QVLDIDVEIRAKIQFFKWAGKRQHFQ 121

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
                Y+ L   L ES   D M     +M+      G + +S    +++ L KA  +  +
Sbjct: 122 HDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWS---EILKILGKAKMVNKA 178

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ESMEKGECSLDGSTYELMIP 313
              F ++    C      YN L+ + +++G   K  E+Y E   +G CS D  TY  +I 
Sbjct: 179 LSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALIS 238

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  K  R D A +LF EMKE    P+  I+ +++    K  +++ ++++  EM+G G  P
Sbjct: 239 AFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAP 298

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y  LI+   K G++D A  L+  M   G +P+  L   +I    ++G+L+ A+ +F
Sbjct: 299 TVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLF 358

Query: 434 TDMER------------------------------------AGFLPTPSTYSCLLEMHAS 457
             M+                                      G  P+  TY+ L++    
Sbjct: 359 GKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCK 418

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK---------------- 501
           + +V+ A+ L   M   G  P  + Y +L+  L + K  + A +                
Sbjct: 419 TNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARV 478

Query: 502 -------------------ILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMG 541
                              +  EMK +G S DV   + LM   I+ G +D A   +R M 
Sbjct: 479 YAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMR 538

Query: 542 SSG----IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            +G    I+++N I+  L     K    + A  +     ES    D V Y ++L+ L R
Sbjct: 539 ENGCTPDIKSHNIILNGL----AKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSR 593



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 167/325 (51%), Gaps = 7/325 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L +    D   SLF  M+ D  K  + L    N +I  L +A +LE +   F 
Sbjct: 303 YTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLI---NNLINILGRAGRLEDALKLFG 359

Query: 260 KVLDSDCKIDTQSYN-VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           K+    C  +  +YN V+  +F +K    +A   +E M+    +    TY ++I    K+
Sbjct: 360 KMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKT 419

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPM 377
            R++ A+ L +EM E+ F P    + SL+DS+G+A R + + +++ E+ + CG R SA +
Sbjct: 420 NRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCG-RSSARV 478

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  +I+ +   G+L  A+ L+ EM+  G  P+   +  ++    ++G +D A S+  +M 
Sbjct: 479 YAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMR 538

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   +++ +L   A +G    A++++  M  + + P   +Y  +L+ L++  + +
Sbjct: 539 ENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFE 598

Query: 498 VAAKILLEMKTMGYSVD-VSASDVL 521
           +AAK++ EMK  G+  D ++ S +L
Sbjct: 599 MAAKLMREMKLKGFEYDSITYSSIL 623



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/428 (22%), Positives = 189/428 (44%), Gaps = 13/428 (3%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D+ +Y  L+      GL  + +   + M +  CS+  + +  ++  L K+  ++ A+ +F
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAK 387
            ++K R   P+  ++ +L+  +   G  +   ++Y E+   G+  P    Y +LI ++ K
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
             + D A RL+DEM+  G  P   ++T I+  + K  K++ A+ +  +M+  G  PT  T
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFT 302

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L++     G+VD A  L+ +M   G +P +     L+ +L +   ++ A K+  +M 
Sbjct: 303 YTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMD 362

Query: 508 TMGYSVDVSASDVLM--VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
           ++  + +V   + ++  ++        A  W   M ++GI  ++F    L +   K    
Sbjct: 363 SLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRV 422

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ--DEQNE--RHLMAILSATKHKAHAFL 621
           E A  LLE   E         Y S++  L R +  +  NE  + L      +  + +A +
Sbjct: 423 EKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVM 482

Query: 622 CGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKV 681
              F    +    V  F      G   ++      Y  N L++ ++  G I+ A  + + 
Sbjct: 483 IKHFGNCGRLSDAVDLFCEMKKLGCSPDV------YTYNALMSGMIRAGMIDEAHSLMRN 536

Query: 682 AYENKLFP 689
             EN   P
Sbjct: 537 MRENGCTP 544


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 125/525 (23%), Positives = 226/525 (43%), Gaps = 60/525 (11%)

Query: 121 MVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTS 180
           + G ++     + +++ I E+++   W  EL+      +     + + Q      DS+  
Sbjct: 6   LTGPVQGSVFQSLSISTISELLSNQHW-SELKPHF---RTTKPAIFLDQLFNAGVDSELV 61

Query: 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY-- 238
           L  F+W++++     G E    +  +L  S+ +  + S  D++V +      S+F +   
Sbjct: 62  LRFFQWSQKEFRISYGLETTGKVLHLLANSKKYSKVRSFLDKLVKNEKHTVSSVFHSLLL 121

Query: 239 -------NRVIQ---YLAKADKLEMSYCC--FKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
                  N +I     LA    LE+   C  F++V D   K+   S N L++  +     
Sbjct: 122 GGDRPCANALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNET 181

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +   +Y+ M K     + +T+ + I  L K+G+L+ A  + +++K   F P+   + +L
Sbjct: 182 GEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTL 241

Query: 347 VD------SMGKAGRLDTSMK--------------------------------VYMEMQG 368
           +D      S GK  R D  +K                                 + EMQ 
Sbjct: 242 IDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQR 301

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G +P+   Y SLI   +  GKLD A+ LWD+M   G +PN   F  +I    K   +  
Sbjct: 302 QGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKE 361

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +F D+     +P   T++ +++    +G ++    L+NSM   G+ P +STY  L+ 
Sbjct: 362 ARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIA 421

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT 547
            L + + V  A K+L EM+      DV   ++L+  + KDG    A + L  M + G++ 
Sbjct: 422 GLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKP 481

Query: 548 NNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           N+     L +  CM+  L  + K  + T +E   K   V+  +VL
Sbjct: 482 NHVTYNTLMDGYCMEGNLKAALK--VRTQMEKEGKRANVVTYNVL 524



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 139/309 (44%), Gaps = 4/309 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  +  L D   +  +     + F+EM     K  I     YN +I  L+   KL+ +
Sbjct: 271 PNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIV---TYNSLINGLSNNGKLDEA 327

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              + K++    K +  ++N L+  F  K +  +A ++++ + + +   +  T+  MI +
Sbjct: 328 IALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDA 387

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K+G ++    L   M +    P+ + +  L+  + +   +  + K+  EM+    +  
Sbjct: 388 FCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKAD 447

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI  + K G+   A +L  EM   G +PN   +  +++ +   G L  A+ + T
Sbjct: 448 VVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRT 507

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL-LTLLAKR 493
            ME+ G      TY+ L++    +G+++ A +L N M   GL P  +TY  + L +L K 
Sbjct: 508 QMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEKG 567

Query: 494 KLVDVAAKI 502
            + D+   +
Sbjct: 568 FIPDIEGHL 576



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 149/339 (43%), Gaps = 5/339 (1%)

Query: 215 GMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAK---ADKLEMSYCCFKKVLDSDCKIDT 270
           G L+  ++++ D    G S     YN +I    K   A K+  +    K++L +    + 
Sbjct: 214 GKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNE 273

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            ++N L+  F        A   +E M++     +  TY  +I  L+ +G+LD AI L+ +
Sbjct: 274 ITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDK 333

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M     +P+   F +L++   K   +  + K++ ++      P+A  + ++I+++ KAG 
Sbjct: 334 MVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGM 393

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           ++    L + M   G  PN   +  +I    ++  +  A  +  +ME         TY+ 
Sbjct: 394 MEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNI 453

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L+      G+   A KL   M + G++P   TY  L+        +  A K+  +M+  G
Sbjct: 454 LIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEG 513

Query: 511 YSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTN 548
              +V   +VL+  + K G ++ A R L  M   G+  N
Sbjct: 514 KRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPN 552



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 126/285 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I    K + +  +   F+++     K +  +YN L+    N G   +A  +++ M
Sbjct: 275 TFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKM 334

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  +  T+  +I    K   +  A KLF ++ E++  P+   F +++D+  KAG +
Sbjct: 335 VGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMM 394

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +    ++  M   G  P+   Y  LI    +   +  A +L +EM     + +   + ++
Sbjct: 395 EEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNIL 454

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K G+   A  +  +M   G  P   TY+ L++ +   G + +A+K+   M   G 
Sbjct: 455 IGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGK 514

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           R  + TY  L+    K   ++ A ++L EM   G + + +  DV+
Sbjct: 515 RANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/332 (20%), Positives = 138/332 (41%), Gaps = 41/332 (12%)

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
           ++++ +   +  + +A ++F+ +++  F+ S N    L+ ++ K         VY EM  
Sbjct: 134 DMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIK 193

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD- 427
              +P+   +   I    KAGKL+ A  + ++++  GF PN   +  +I+ H K G    
Sbjct: 194 RRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGK 253

Query: 428 -------------------------------------IAMSIFTDMERAGFLPTPSTYSC 450
                                                 A + F +M+R G  P   TY+ 
Sbjct: 254 MYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNS 313

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L+   +++G++D A+ L++ M   GL+P + T+ AL+    K+K++  A K+  ++    
Sbjct: 314 LINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQD 373

Query: 511 YSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
              + ++ + ++  + K G ++        M   GI  N      L     +N    +AK
Sbjct: 374 LVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAK 433

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
            LL        K D+V Y  ++     C+D +
Sbjct: 434 KLLNEMENYELKADVVTYNILIGGW--CKDGE 463


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 178/358 (49%), Gaps = 3/358 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES-MEKG 299
           +I  LA + +   +   F+++  S  K  T++YN L+  ++  G P K  E+  S MEK 
Sbjct: 312 IISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTG-PLKDAELMVSEMEKR 370

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             S D  TY L+I +   +GR ++A  + +EM+  + +P+  +F+ L+      G    +
Sbjct: 371 GVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKT 430

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            +V  EM+  G +P    Y  +I+++ K   LD A+  +D M   G  P+   +  +I+ 
Sbjct: 431 FQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDC 490

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           H K G+  +A  +F  MER G LP  +TY+ ++  +    + D   +L   M S G+ P 
Sbjct: 491 HCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPN 550

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLR 538
           + T+T L+ +  K    + A + L EMK++G     +  + L+  Y + G  + A+   R
Sbjct: 551 VVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFR 610

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            M S G++ +   +  L  +  ++     A  +L+   E+  K D+V YT+++  L+R
Sbjct: 611 VMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIR 668



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 148/335 (44%), Gaps = 5/335 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAK 247
           RQS   P  + Y  L     ++    G L   + MV +  K G+S     Y+ +I     
Sbjct: 333 RQSGIKPRTKAYNALLKGYVKT----GPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVN 388

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
           A + E +    K++   D + ++  ++ L+  + ++G   K F++ + M+      D   
Sbjct: 389 AGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQF 448

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y ++I +  K   LD A+  F  M      P    + +L+D   K GR   + +++  M+
Sbjct: 449 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAME 508

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P A  Y  +I SY    + D   RL  +M+  G  PN    T +++ + KSG+ +
Sbjct: 509 RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFN 568

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+    +M+  G  P+ + Y+ L+  +A  G  + A+  +  MTS GL+P L    +L+
Sbjct: 569 DAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLI 628

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
               + +    A  +L  MK  G   DV     LM
Sbjct: 629 NAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLM 663



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 114/241 (47%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN VI    K + L+ +   F ++L    + D  ++N L+      G    A E++E+ME
Sbjct: 449 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAME 508

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C    +TY +MI S     R D   +L  +MK +   P+     +LVD  GK+GR +
Sbjct: 509 RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFN 568

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +++   EM+  G +PS+ MY +LI +YA+ G  + A+  +  M   G +P+      +I
Sbjct: 569 DAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLI 628

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  +  +   A ++   M+  G  P   TY+ L++      +      +Y  M  +G +
Sbjct: 629 NAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPGVYEEMIMSGCK 688

Query: 478 P 478
           P
Sbjct: 689 P 689



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 155/339 (45%), Gaps = 8/339 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  L +++KL  ++     +L     +   +YN L+          KA  +   M 
Sbjct: 172 YSILIHALGRSEKLYEAF-----LLSQKQTLTPLTYNALIGACARNNDIEKALNLISRMR 226

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAI--KLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +     D   Y L+I SL +  ++D+ +  +L++E++         +   ++    K+G 
Sbjct: 227 QDGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLYKEIERDKLELDVQLVNDIIMGFAKSGD 286

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              ++++    Q  G        VS+I + A +G+   A  L++E+R +G +P    +  
Sbjct: 287 PSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNA 346

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++ + K+G L  A  + ++ME+ G  P   TYS L++ + ++G+ +SA  +   M +  
Sbjct: 347 LLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGD 406

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           ++P    ++ LL     R       ++L EMK++G   D    +V++  + K   +DHA+
Sbjct: 407 VQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAM 466

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
                M S GI  +      L +   K+  +  A+ + E
Sbjct: 467 TTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFE 505


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 191/406 (47%), Gaps = 34/406 (8%)

Query: 167 ITQALKVINDSDT-SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           + + LK ++++   +LS F WA++Q  +    E Y  L + L + + F  + SL +EM  
Sbjct: 126 VVEVLKRLSNAGVIALSFFTWAEKQKGFKYNTESYNALIEALGKIKQFKLIRSLVNEMKS 185

Query: 226 DS--SKNGISLFSA-----------------------------YNRVIQYLAKADKLEMS 254
               +K+  +L S                              +NR++  L K+  +E +
Sbjct: 186 RKLLNKDTFALISRRHARARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKA 245

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F K+       D +SY +L+  +  +    +  E+Y  M+      D  TY ++I +
Sbjct: 246 NKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISA 305

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K+ + DAAI+LF EM+ +N +P+ +++ +L++ +G   RL  +++ +   + CG  P 
Sbjct: 306 YCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPE 365

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           AP Y SL+ +Y  + ++D A ++ DEMR     PN   + +I+    K+ + + A   F 
Sbjct: 366 APTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQ 425

Query: 435 DM-ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            M    G  PT STY  ++ M  +  +VD A ++++ M + G+ PG+  Y+ L+T L  +
Sbjct: 426 KMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHK 485

Query: 494 KLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLR 538
             +  A K   EM   G        S++    + +G  D AL   R
Sbjct: 486 NKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDEALNLAR 531



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 153/352 (43%), Gaps = 28/352 (7%)

Query: 125 IKKPFLNASAVAKIVEVVNRWK-WGPELETQ-----LDKLQFVPKMVHITQALKVINDSD 178
           I +    A  V + +E   R + +G +LET      LD L    K  H+ +A KV +   
Sbjct: 197 ISRRHARARKVEEAIEAFERMEEFGFKLETSDFNRLLDTL---CKSRHVEKANKVFD--- 250

Query: 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY 238
                 +  KR+  +VP  + Y +L +   +  +   +  ++ EM +D  +  +     Y
Sbjct: 251 ------KMKKRR--FVPDIKSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVV---TY 299

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
             +I    KA K + +   F ++   +CK     Y  L+    ++    +A E +E  + 
Sbjct: 300 GILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKS 359

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              + +  TY  ++ +   S R+D A ++  EM++ +  P+   +  ++  + KA R + 
Sbjct: 360 CGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNE 419

Query: 359 SMKVYMEMQ---GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +   + +M    GC   P+   Y  ++  +    ++D A ++WD+M+  G  P   +++ 
Sbjct: 420 AYFRFQKMSNEPGC--EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSD 477

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           +I S     KL  A   F +M  AG  P    +S L +     G+ D A+ L
Sbjct: 478 LITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDEALNL 529


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score =  145 bits (367), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 176/362 (48%), Gaps = 1/362 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I  LA + +   +   F+++  S  K  T++YN L+  ++  G    A  +   MEK  
Sbjct: 281 IISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRG 340

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            S D  TY L+I +   +GR ++A  + +EM+  + +P+  +F+ L+      G    + 
Sbjct: 341 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTF 400

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +V  EM+  G +P    Y  +I+++ K   LD A+  +D M   G  P+   +  +I+ H
Sbjct: 401 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 460

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K G+  +A  +F  MER G LP  +TY+ ++  +    + D   +L   M S G+ P +
Sbjct: 461 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 520

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRF 539
            T+T L+ +  K    + A + L EMK++G     +  + L+  Y + G  + A+   R 
Sbjct: 521 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 580

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           M S G++ +   +  L  +  ++     A  +L+   E+  K D+V YT+++  L+R   
Sbjct: 581 MTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDK 640

Query: 600 EQ 601
            Q
Sbjct: 641 FQ 642



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 5/335 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAK 247
           RQS   P    Y  L     ++    G L   + MV +  K G+S     Y+ +I     
Sbjct: 302 RQSGIKPRTRAYNALLKGYVKT----GPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN 357

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
           A + E +    K++   D + ++  ++ L+  F ++G   K F++ + M+      D   
Sbjct: 358 AGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQF 417

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y ++I +  K   LD A+  F  M      P    + +L+D   K GR   + +++  M+
Sbjct: 418 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAME 477

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P A  Y  +I SY    + D   RL  +M+  G  PN    T +++ + KSG+ +
Sbjct: 478 RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFN 537

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+    +M+  G  P+ + Y+ L+  +A  G  + A+  +  MTS GL+P L    +L+
Sbjct: 538 DAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLI 597

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
               + +    A  +L  MK  G   DV     LM
Sbjct: 598 NAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLM 632



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 114/241 (47%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN VI    K + L+ +   F ++L    + D  ++N L+      G    A E++E+ME
Sbjct: 418 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAME 477

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C    +TY +MI S     R D   +L  +MK +   P+     +LVD  GK+GR +
Sbjct: 478 RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFN 537

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +++   EM+  G +PS+ MY +LI +YA+ G  + A+  +  M   G +P+      +I
Sbjct: 538 DAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLI 597

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  +  +   A ++   M+  G  P   TY+ L++      +      +Y  M  +G +
Sbjct: 598 NAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCK 657

Query: 478 P 478
           P
Sbjct: 658 P 658



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 157/339 (46%), Gaps = 8/339 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  L +++KL   Y  F  +L     +   +YN L+          KA  +   M 
Sbjct: 141 YSILIHALGRSEKL---YEAF--LLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMR 195

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAA--IKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +     D   Y L+I SL +S ++D+   ++L++E++         +   ++    K+G 
Sbjct: 196 QDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGD 255

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              ++++    Q  G        VS+I + A +G+   A  L++E+R +G +P    +  
Sbjct: 256 PSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNA 315

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++ + K+G L  A S+ ++ME+ G  P   TYS L++ + ++G+ +SA  +   M +  
Sbjct: 316 LLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGD 375

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           ++P    ++ LL     R       ++L EMK++G   D    +V++  + K   +DHA+
Sbjct: 376 VQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAM 435

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
                M S GI  +      L +   K+  +  A+ + E
Sbjct: 436 TTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFE 474


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 134/580 (23%), Positives = 253/580 (43%), Gaps = 44/580 (7%)

Query: 238 YNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           YN VI    K    L  +   F+++L      D +++N L++     G    A  +++ M
Sbjct: 271 YNAVIDACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEM 330

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY   I ++ K G ++ A+++  +M+ +N +P+   +++L+D   K  + 
Sbjct: 331 IHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKY 390

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++K+Y +M+  G +     Y +++  Y KAGK      + DEM  +G   +   +  +
Sbjct: 391 DEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSL 450

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I  + K G+LDI   +  DM R G  P+  TYS L+++++ +G    A  +Y     +GL
Sbjct: 451 INGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGL 510

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P +  +++ +  LAK  LV+ A  +L +M  MG   +V   + ++  + K   +     
Sbjct: 511 KPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDP 570

Query: 536 WLRFMGSSG------IRTNNFIVRQLFESCMKNALYESAK-----PLLETYVESAAKVDL 584
               MG  G      IR  N + R    S +   +  S +      L +  V+   + ++
Sbjct: 571 EAGEMGIVGVYNGQIIRAANPVTRG--RSAIDVRMRRSQELYFILELFQKMVQQGVRPNV 628

Query: 585 VLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFH 644
           V ++++L    RC + ++   L+  L    +  +    GL  G     Q + S  +  F+
Sbjct: 629 VTFSAILNACSRCNNFEDAALLLEQLRLFDNFVYGVAYGLLMG----YQEIWSQAQSLFN 684

Query: 645 GIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWS--- 701
            +   ++   +  F N L + L   GQ   A+ V       +++           WS   
Sbjct: 685 QLG-RMDSPTSSAFYNALTDVLWHFGQRQGAQLVVLEGVNRRVWDN--------TWSEFC 735

Query: 702 LDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQ 751
           LD+  +S GAA   V   L   R  +     +P  + ++TG           TL+ VI  
Sbjct: 736 LDLHLMSCGAAQAMVHAWLLNVRSIVFEGRAMPEFLSILTGWGKHSKIAGASTLRHVIEA 795

Query: 752 MLSSVESPFEVSKVVLR---APGDSVMEWFKKPIVQQFLL 788
           +L+S+ +PF+V +  +    +P   V  W ++      LL
Sbjct: 796 LLNSIGAPFQVERFNIGRFVSPSAVVAAWLRESGTMNILL 835



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 146/349 (41%), Gaps = 40/349 (11%)

Query: 288 KAFEIYESMEK--GECSLD-GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           +A E++ +     G  S+D G      I +L K  R D A + F       +  +    +
Sbjct: 178 RALEVFHAALPLVGNGSVDKGKLLTAAIGALGKMSRPDLARRAFDAGIAGGYGNTVFANS 237

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----------------- 387
           +L+ +  ++G ++ +M V   M+G G RP+   Y ++I++  K                 
Sbjct: 238 ALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQMLR 297

Query: 388 -------------------AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
                              AG L+ A  L+DEM   G   +   +   I++  K G +++
Sbjct: 298 DRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIEL 357

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           AM +  DME     P   TYS L++ ++   + D A+KLY  M S G++     Y  +L 
Sbjct: 358 AMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLA 417

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
           +  K       A +  EM+  G   D V+ + ++  Y K G +D     ++ M   G+  
Sbjct: 418 IYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAP 477

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +      L +   K  ++  A  +   + ES  K D+VL++S +  L +
Sbjct: 478 SVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAK 526


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 128/575 (22%), Positives = 241/575 (41%), Gaps = 94/575 (16%)

Query: 111 SVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQA 170
           S +P    H  V   ++PF   + V+++  +++R +W  +  ++L +L    K  H+ + 
Sbjct: 26  SSKPHISSHFAVPASREPF--QAIVSRVCAILSRVQW--KGSSELKQLSPQLKAHHVAEI 81

Query: 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF---DGMLSLFDEMVHDS 227
           + V  D+++ +  F W  ++ +Y     C++ + + L   R F   D +  L  +   + 
Sbjct: 82  VAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNE 141

Query: 228 SKN---------------GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            +                G SL+S    +IQ LAK + +E +   +K++L+S  +    +
Sbjct: 142 EEIRRVADFLNEISGMGFGFSLYSCNTLLIQ-LAKFEMVEGARNLYKQMLNSGIQPSLLT 200

Query: 273 YNVLMTLFLNKG---------------------LPYK--------------AFEIYESME 297
           +N L+ +   KG                       Y               AF +++ M 
Sbjct: 201 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV 260

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE--------------------------- 330
           K  C  +  TY  +I  L   GR+D A+ + +E                           
Sbjct: 261 KEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 320

Query: 331 --------MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
                   MK+R  RP+   + +L+  + + G+L+ ++ +Y +M   G  P+   Y +LI
Sbjct: 321 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 380

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
                 G+  TAL+++  M   G   N   +  II+     G ++ AM +F  M + G L
Sbjct: 381 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 440

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           PT  TY+ L+  + + G V++A +L + M   G  P   TY  L++  +K   ++ A+  
Sbjct: 441 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 500

Query: 503 LLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             EM   G + + VS + ++  + KDG VD AL  L+ M   G   N      +     K
Sbjct: 501 FQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSK 560

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +  A+ + +  VE     +++ YT+++  L R
Sbjct: 561 ENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCR 595



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 148/330 (44%), Gaps = 5/330 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLE 252
           VP    Y  L + L     F   L +F  M  H S  N       YN +I+ L     +E
Sbjct: 370 VPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANT----QTYNEIIKGLCLGGDIE 425

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F+K+L         +YN L+  +L KG    A  + + M++  C  D  TY  ++
Sbjct: 426 KAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELV 485

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
              +K G+L++A   FQEM E    P+   + +L+D   K G++D ++ +   M+  G  
Sbjct: 486 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCN 545

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y ++I   +K  +   A ++ D+M   G  PN   +T +I+   ++G+   A  I
Sbjct: 546 PNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 605

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F DME+   LP   TYS L+      G+ D A  L   M   GL P   T+T+L+     
Sbjct: 606 FHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVV 665

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
              +D A  +L  M  MG   +     VL+
Sbjct: 666 LGRIDHAFLLLRRMVDMGCKPNYRTYSVLL 695



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 171/379 (45%), Gaps = 42/379 (11%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  L++  KLE++   + K+L      +T +YN L+      G    A +I+  M
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWM 399

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      +  TY  +I  L   G ++ A+ LF++M +    P+   + +L++     G +
Sbjct: 400 EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNV 459

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + ++   M+  G  P    Y  L+  ++K GKL++A   + EM   G  PN   +T +
Sbjct: 460 NNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTAL 519

Query: 417 IESHAKSGKLDIAMSIFTDME-----------------------------------RAGF 441
           I+ H+K GK+DIA+S+   ME                                     G 
Sbjct: 520 IDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGL 579

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           LP   TY+ L++    +G+   A K+++ M      P L TY++L+  L +    D A  
Sbjct: 580 LPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEI 639

Query: 502 ILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI----RTNNFIVRQLF 556
           +L EM+  G + D V+ + ++  ++  G +DHA   LR M   G     RT + +++ L 
Sbjct: 640 LLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQ 699

Query: 557 ESCMKNALYESAKPLLETY 575
           + C+   L E   PL++ Y
Sbjct: 700 KECL--LLEEKIFPLVDNY 716



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 164/402 (40%), Gaps = 4/402 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L + L      D  L + +EM+    +  +     Y   I  L   +  E +
Sbjct: 266 PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVY---TYTLPITALCAIEHEEEA 322

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                ++    C+ + Q+Y  L++     G    A  +Y  M K     +  TY  +I  
Sbjct: 323 IELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINE 382

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L   GR   A+K+F  M+      +   +  ++  +   G ++ +M ++ +M   G  P+
Sbjct: 383 LCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPT 442

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +LI  Y   G ++ A RL D M+  G  P+   +  ++   +K GKL+ A   F 
Sbjct: 443 VVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQ 502

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M   G  P P +Y+ L++ H+  G+VD A+ L   M   G  P + +Y A++  L+K  
Sbjct: 503 EMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKEN 562

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
               A KI  +M   G   +V     L+  + ++G    A +    M       N +   
Sbjct: 563 RFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYS 622

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L     +    + A+ LL+         D V +TS++   V
Sbjct: 623 SLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFV 664



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 148/325 (45%), Gaps = 18/325 (5%)

Query: 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY 238
           T+L +F W +     +   + Y  +   L    D +  + LF++M+       +     Y
Sbjct: 391 TALKIFHWMEGHG-SLANTQTYNEIIKGLCLGGDIEKAMVLFEKML---KMGPLPTVVTY 446

Query: 239 NRVIQ-YLAKADKLEMSYCCFKKVLD----SDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
           N +I  YL K +    +     ++LD    + C+ D  +YN L++ F   G    A   +
Sbjct: 447 NTLINGYLTKGNVNNAA-----RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYF 501

Query: 294 ESMEKGECSLDGS--TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           + M   EC L+ +  +Y  +I   +K G++D A+ L + M+E    P+   + ++++ + 
Sbjct: 502 QEMV--ECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS 559

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K  R   + K+  +M   G  P+   Y +LI+   + G+   A +++ +M      PN  
Sbjct: 560 KENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLY 619

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            ++ +I    + GK D A  +  +MER G  P   T++ L++     G++D A  L   M
Sbjct: 620 TYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM 679

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLV 496
              G +P   TY+ LL  L K  L+
Sbjct: 680 VDMGCKPNYRTYSVLLKGLQKECLL 704


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 170/364 (46%), Gaps = 1/364 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I+   K  + + +     ++ +  C ++T +YNVL+      G   +AF   + M
Sbjct: 119 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 178

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      DG TY  +I  L KS R + A  L  EM     +P+  ++A+L+D   + G  
Sbjct: 179 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNA 238

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + K+  EM   G +P+   Y +L+    K G++D A  L  +M     RP+   + +I
Sbjct: 239 DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLI 298

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           IE H +      A  + ++ME AG  P   TYS ++     SG+ + A  L   MT+ GL
Sbjct: 299 IEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 358

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +P    Y  L++   +   V +A +I  +M  +    D+   + L+  + K G V+ + +
Sbjct: 359 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 418

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           +   M   G+  N F    L    +KN   ESA+ L++  +++  K + V+Y  +L    
Sbjct: 419 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF 478

Query: 596 RCQD 599
           +  D
Sbjct: 479 KSDD 482



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 183/434 (42%), Gaps = 6/434 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253
           P    Y  L D      + D    +  EMV    + N I+    Y+ +++ L K  +++ 
Sbjct: 220 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKIT----YDNLVRGLCKMGQMDR 275

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +    K+++    + DT +YN+++           AF +   ME    S +  TY +MI 
Sbjct: 276 ASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIH 335

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L +SG  + A  L +EM  +  +P+  ++A L+    + G +  + +++ +M      P
Sbjct: 336 GLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLP 395

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y SLI   +K G+++ + + + +M+  G  PN   ++ +I  + K+G L+ A  + 
Sbjct: 396 DLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLV 455

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G  P    Y  LLE +  S  ++     + SM   G+      Y  L+  L+  
Sbjct: 456 QRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSS 515

Query: 494 KLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
             ++ A ++L E++  G   DV   S ++    K    + A   L  M   G+  N    
Sbjct: 516 GNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCY 575

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
             L +   K+     A+ +  + +      + V YTS++    +  D  N  +L   + A
Sbjct: 576 NALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLA 635

Query: 613 TKHKAHAFLCGLFT 626
           T     AF+  + T
Sbjct: 636 TGITPDAFVYSVLT 649



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 151/338 (44%), Gaps = 3/338 (0%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           +FD+M   +  N +     YN +I  L+K  ++E S   F ++ +     +  +Y+ L+ 
Sbjct: 384 IFDKM---TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIH 440

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +L  G    A ++ + M       +   Y  ++ S  KS  ++     F+ M ++    
Sbjct: 441 GYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVML 500

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
              I+  L+ ++  +G ++ + +V  E++  G  P   +Y SLI    K    + A  + 
Sbjct: 501 DNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGIL 560

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           DEM   G  PN   +  +I+   KSG +  A ++F  +   G +P   TY+ L++     
Sbjct: 561 DEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKV 620

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G + +A  LYN M + G+ P    Y+ L T  +    ++ A  ++ EM   G++   S +
Sbjct: 621 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFN 680

Query: 519 DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
           +++  + K G +   L+ L  +   G+  N   +  + 
Sbjct: 681 NLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 718



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 177/414 (42%), Gaps = 4/414 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  L + L +SR  +   +L DEM     K  + +   Y  +I    +    + 
Sbjct: 184 VPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVV---YANLIDGFMREGNADE 240

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++   K+++ +  + +  +Y+ L+      G   +A  + + M +     D  TY L+I 
Sbjct: 241 AFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 300

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              +      A +L  EM+     P+   ++ ++  + ++G  + +  +  EM   G +P
Sbjct: 301 GHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKP 360

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +A +Y  LI  Y + G +  A  ++D+M      P+   +  +I   +K G+++ +   F
Sbjct: 361 NAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYF 420

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M+  G LP   TYS L+  +  +G ++SA +L   M   GL+P    Y  LL    K 
Sbjct: 421 AQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS 480

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIV 552
             ++  +     M   G  +D     +L+  +   G+++ A R L  +  +G   +  + 
Sbjct: 481 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVY 540

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
             L     K A  E A  +L+   +     ++V Y +++  L +  D    R++
Sbjct: 541 SSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNV 594



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 179/433 (41%), Gaps = 13/433 (3%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           +  ++++ +  KSGR+  A ++   M++R   PS     +L+  + +A  +    KV   
Sbjct: 48  AVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREF 107

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M G G  P    Y +LIE+Y K  + DTA ++  EMR  G   N   + ++I    +SG 
Sbjct: 108 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 167

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           ++ A     DME  G +P   TY  L+     S + + A  L + M+ A L+P +  Y  
Sbjct: 168 VEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYAN 227

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
           L+    +    D A K++ EM   G   + ++  +++    K G +D A   L+ M    
Sbjct: 228 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 287

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
            R +      + E   ++   + A  LL     +    ++  Y+ ++  L +  + +   
Sbjct: 288 HRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 347

Query: 605 HLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLN 664
            L+  ++    K +AF+         R+  V S   E F  +  ++      Y  N L+ 
Sbjct: 348 DLLEEMTTKGLKPNAFVYAPLISGYCREGNV-SLACEIFDKMT-KVNVLPDLYCYNSLIF 405

Query: 665 YLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFR 724
            L  +G++  +   +    E  L P    +   I   L   +L     L+          
Sbjct: 406 GLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLV---------- 455

Query: 725 KRMLYYGVVPRRI 737
           +RML  G+ P  +
Sbjct: 456 QRMLDTGLKPNDV 468



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 159/374 (42%), Gaps = 42/374 (11%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L ++ + E +    +++     K +   Y  L++ +  +G    A EI++ M
Sbjct: 329 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM 388

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     D   Y  +I  L+K GR++ + K F +M+ER   P+   ++ L+    K G L
Sbjct: 389 TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDL 448

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA---------------------------- 388
           +++ ++   M   G +P+  +Y+ L+ESY K+                            
Sbjct: 449 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 508

Query: 389 -------GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
                  G ++ A R+  E+   G  P+  +++ +I    K+   + A  I  +M + G 
Sbjct: 509 IHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGV 568

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P    Y+ L++    SG +  A  ++NS+ + GL P   TYT+L+    K   +  A  
Sbjct: 569 DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFY 628

Query: 502 ILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFM---GSSGIRTNNFIVRQLFE 557
           +  EM   G + D     VL       G ++ A+  +  M   G + I + N +V     
Sbjct: 629 LYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGF-- 686

Query: 558 SCMKNALYESAKPL 571
            C +  + E+ K L
Sbjct: 687 -CKRGKMQETLKLL 699



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 1/308 (0%)

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
           +++ E M     S D  TY  +I +  K    D A K+  EM+ER    +   +  L+  
Sbjct: 102 WKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAG 161

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + ++G ++ +     +M+  G  P    Y +LI    K+ + + A  L DEM  A  +PN
Sbjct: 162 LCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPN 221

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
             ++  +I+   + G  D A  +  +M  AG  P   TY  L+      GQ+D A  L  
Sbjct: 222 VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLK 281

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDG 528
            M     RP   TY  ++    +      A ++L EM+  G S +V    +++  + + G
Sbjct: 282 QMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSG 341

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
             + A   L  M + G++ N F+   L     +      A  + +   +     DL  Y 
Sbjct: 342 EPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYN 401

Query: 589 SVLAHLVR 596
           S++  L +
Sbjct: 402 SLIFGLSK 409



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 25/270 (9%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P   CY  L D L +S D     ++F+ ++   +K  +     Y  +I    K   +  +
Sbjct: 570 PNIVCYNALIDGLCKSGDISYARNVFNSIL---AKGLVPNCVTYTSLIDGSCKVGDISNA 626

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKG-LPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +  + ++L +    D   Y+VL T   + G L    F I E   +G  S+  S++  ++ 
Sbjct: 627 FYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASI--SSFNNLVD 684

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              K G++   +KL   +  R   P+     +++  + +AG+L     +++E+Q      
Sbjct: 685 GFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSES 744

Query: 374 SAPMYVSL------------------IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +A  + SL                  I  + K G LD AL L D +           +  
Sbjct: 745 AARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLA 804

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFL-PT 444
           I+++  + GKL  A+++  +M++ G L PT
Sbjct: 805 IVDNLCRKGKLSEALNLLKEMDKRGNLQPT 834


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 177/379 (46%), Gaps = 9/379 (2%)

Query: 137 KIVEVVNRWKWGPELETQLD--KLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           + + ++  +KWG + E  ++  KL+   ++VH  Q L +  +    +  F+WA ++  + 
Sbjct: 64  RFIRILKIFKWGSDAEKAIEVLKLKVDHRLVH--QVLDIDVEIRAKIQFFKWAGKRQHFQ 121

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
                Y+ L   L ES   D M     +M+      G + +S    +++ L KA  +  +
Sbjct: 122 HDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWS---EILKILGKAKMVNKA 178

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ESMEKGECSLDGSTYELMIP 313
              F ++    C      YN L+ + +++G   K  E+Y E   +G CS D  TY  +I 
Sbjct: 179 LSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALIS 238

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  K  R D A +LF EMKE    P+  I+ +++    K  +++ ++++  EM+G G  P
Sbjct: 239 AFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAP 298

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y  LI+   K G++D A  L+  M   G +P+  L   +I    ++G+L+ A+ +F
Sbjct: 299 TVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLF 358

Query: 434 TDMERAGFLPTPSTYSCLLE-MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
             M+     P   TY+ +++ +  S      A   +  M + G+ P   TY  L+    K
Sbjct: 359 GKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCK 418

Query: 493 RKLVDVAAKILLEMKTMGY 511
              V+ A  +L EM   G+
Sbjct: 419 TNRVEKALLLLEEMDEKGF 437



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 165/325 (50%), Gaps = 7/325 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L +    D   SLF  M+ D  K  + L    N +I  L +A +LE +   F 
Sbjct: 303 YTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLI---NNLINILGRAGRLEDALKLFG 359

Query: 260 KVLDSDCKIDTQSYN-VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           K+    C  +  +YN V+  +F +K    +A   +E M+    +    TY ++I    K+
Sbjct: 360 KMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKT 419

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPM 377
            R++ A+ L +EM E+ F P    + SL+DS+G+A R + + +++ E+ + CG R SA +
Sbjct: 420 NRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCG-RSSARV 478

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  +I+ +   G+L  A+ L+ E    G  P+   +  ++    ++G +D A S+  +M 
Sbjct: 479 YAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMR 538

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   +++ +L   A +G    A++++  M  + + P   +Y  +L+ L++  + +
Sbjct: 539 ENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFE 598

Query: 498 VAAKILLEMKTMGYSVD-VSASDVL 521
           +AAK++ EMK  G+  D ++ S +L
Sbjct: 599 MAAKLMREMKLKGFEYDSITYSSIL 623



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/428 (22%), Positives = 189/428 (44%), Gaps = 13/428 (3%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D+ +Y  L+      GL  + +   + M +  CS+  + +  ++  L K+  ++ A+ +F
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAK 387
            ++K R   P+  ++ +L+  +   G  +   ++Y E+   G+  P    Y +LI ++ K
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
             + D A RL+DEM+  G  P   ++T I+  + K  K++ A+ +  +M+  G  PT  T
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFT 302

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L++     G+VD A  L+ +M   G +P +     L+ +L +   ++ A K+  +M 
Sbjct: 303 YTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMD 362

Query: 508 TMGYSVDVSASDVLM--VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
           ++  + +V   + ++  ++        A  W   M ++GI  ++F    L +   K    
Sbjct: 363 SLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRV 422

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ--DEQNE--RHLMAILSATKHKAHAFL 621
           E A  LLE   E         Y S++  L R +  +  NE  + L      +  + +A +
Sbjct: 423 EKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVM 482

Query: 622 CGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKV 681
              F    +    V  F      G   ++      Y  N L++ ++  G I+ A  + + 
Sbjct: 483 IKHFGNCGRLSDAVDLFCEXEKLGCSPDV------YTYNALMSGMIRAGMIDEAHSLMRN 536

Query: 682 AYENKLFP 689
             EN   P
Sbjct: 537 MRENGCTP 544


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 217/481 (45%), Gaps = 31/481 (6%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMV--HITQALKVINDSDTSLSLFRWAKRQSW 192
           V+KI  +++   W  E  ++L  L  +PK+   H+   L   N++++ L  F W  R  +
Sbjct: 51  VSKISIILSSPTW--ERSSELSHL--IPKLKPHHVVNLLDTHNNTESVLRFFHWVSRTHF 106

Query: 193 --------------------YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI 232
                               +VP D   +++        +   ++ +  E ++ +   G 
Sbjct: 107 FKHDMSCFVSMLNRLVRDRLFVPADNVRILMIKSCRNEGEVKRVIQVLSE-INTTYDFGY 165

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           +L+S    +IQ L K D   +    + ++L+S  + +  ++N ++ +  NKG   +A  I
Sbjct: 166 TLYSFSTLLIQ-LGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELI 224

Query: 293 YESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
              +   G C  D  TY  +I    K+G LD A ++F  M +    P+   +++L++ + 
Sbjct: 225 MGHIFHYGACP-DTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLC 283

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
             GRL+ +M +  EM   G  P+   Y   I S   AG+   A++L  +M+  G  PN  
Sbjct: 284 SEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQ 343

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +T +I   ++ GK ++A+ ++  M   G +PT  TYS L+      G+ ++A+ ++  M
Sbjct: 344 TYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWM 403

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSV 530
            S    P   TY  ++        +  A  I  +M   G S +V   ++++ +Y K G +
Sbjct: 404 LSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYM 463

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           ++A+R L  M  +G++ + +    L     +    E A  L    VE     ++V Y ++
Sbjct: 464 NNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAI 523

Query: 591 L 591
           +
Sbjct: 524 I 524



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 187/408 (45%), Gaps = 8/408 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P  + Y  L   L+    F+  + ++ +M+ D     +     Y+ +I  L    + E +
Sbjct: 340 PNVQTYTALISGLSRDGKFEVAIGVYHKMLADGL---VPTAVTYSALINQLYVEGRFETA 396

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F+ +L  D   +T++YNV++  F + G   KA  I++ M K   S +  TY ++I  
Sbjct: 397 LTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHI 456

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K G ++ A++L + MK    +     +A+L+    + G+L+ +  ++ EM   G  P+
Sbjct: 457 YFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPN 516

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y ++I  Y    K+D AL L+ +M  +G  P+ G + M+I   +K+ ++  A +   
Sbjct: 517 VVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCG 576

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M + G LP   TY+  ++    +G+   A K+++ M      P L TY++L+  L +  
Sbjct: 577 KMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEG 636

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
             + A ++L +    G   +V     L+  +   G    A + +  M   G++ +  I R
Sbjct: 637 QAEDAERLLDD----GCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYR 692

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
            L     KN   ESA  + ++ V +  +  L  Y +++  L +    Q
Sbjct: 693 ALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQ 740



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 173/394 (43%), Gaps = 8/394 (2%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           + D    +FD MV D        +SA   +I  L    +LE +    ++++D   +    
Sbjct: 252 NLDLAFEMFDRMVKDGCDPNSVTYSA---LINGLCSEGRLEEAMDMLEEMIDKGIEPTVH 308

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y + +    + G   +A ++   M+K  C  +  TY  +I  L++ G+ + AI ++ +M
Sbjct: 309 AYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKM 368

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
                 P+   +++L++ +   GR +T++ ++  M      P+   Y  +I+ +   G +
Sbjct: 369 LADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYI 428

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A  ++D+M  AG  PN   + +II  + K G ++ AM +   M+  G      TY+ L
Sbjct: 429 QKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANL 488

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +   +  G+++ A  L+N M   G+ P + TY A++        VD A  +  +M   G 
Sbjct: 489 ISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESG- 547

Query: 512 SVDVSASDVLMV--YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
           +V  S +  +M+  + K   +  A  +   M   G+  N        +   KN     A 
Sbjct: 548 NVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAF 607

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
            +     +     +L  Y+S++  L  CQ+ Q E
Sbjct: 608 KIFHEMKKRDYFPNLCTYSSLIDGL--CQEGQAE 639



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 134/306 (43%), Gaps = 36/306 (11%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L    +     +   SLF+EMV H  S N ++    YN +I       K++ +   F
Sbjct: 485 YANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVT----YNAIINGYLTVAKVDDALALF 540

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            K+++S     + +YN++++ F       +A      M K     +  TY   I  L K+
Sbjct: 541 WKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKN 600

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSM---GKA---------------------- 353
           GR   A K+F EMK+R++ P+   ++SL+D +   G+A                      
Sbjct: 601 GRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLV 660

Query: 354 ------GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
                 GR   + ++   M+  G +PS  +Y +L+    K  ++++AL+++D M   GF+
Sbjct: 661 RGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQ 720

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P    +  +I +  K+     A  +F  M +  +      ++ LL+     G+ D +++L
Sbjct: 721 PCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLEL 780

Query: 468 YNSMTS 473
            + M S
Sbjct: 781 LHVMES 786



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 116/260 (44%), Gaps = 8/260 (3%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L+LF W   +S  VP    Y M+    +++       +   +MV       +  +++
Sbjct: 534 DDALALF-WKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTS 592

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +   I  L K  +  +++  F ++   D   +  +Y+ L+     +G    A    E + 
Sbjct: 593 F---IDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDA----ERLL 645

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  +  TY  ++  L   GR   A +L + MK++  +PS  I+ +L+    K   ++
Sbjct: 646 DDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVE 705

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           +++K++  M   G +P    Y +LI +  KA     A  ++  M    +  +  ++T+++
Sbjct: 706 SALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLL 765

Query: 418 ESHAKSGKLDIAMSIFTDME 437
           +   K G+ D+++ +   ME
Sbjct: 766 DGLLKEGETDLSLELLHVME 785


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 136/597 (22%), Positives = 259/597 (43%), Gaps = 65/597 (10%)

Query: 238 YNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           YN VI    K   + +     F ++  +  + D  ++N L+ +    GL   A  +++ M
Sbjct: 306 YNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEM 365

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  +Y  ++ ++ K G++D A ++  +M  +   P+   +++++D   KAGR 
Sbjct: 366 TNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRF 425

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ ++ EM+  G       Y +L+  Y K G+ + AL +  EM   G + +   +  +
Sbjct: 426 DEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNAL 485

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  + K GK D    +FT+M+R   LP   TYS L++ ++  G    AM+++    SAGL
Sbjct: 486 LGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGL 545

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           R  +  Y+AL+  L K  LV  A  ++ EM   G S + V+ + ++  + +  ++D +  
Sbjct: 546 RADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSAD 605

Query: 536 W-----LRFMG---SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA------- 580
           +     L F     S+   T    V QLF      +   + K   E   E +        
Sbjct: 606 YSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRK 665

Query: 581 ------KVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQP 634
                 K ++V ++++L    RC   ++   L+  L    +K +  + GL  G   +++ 
Sbjct: 666 MHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMG---QREN 722

Query: 635 VLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQI---------NRARCVWKVAYEN 685
           V    +  F  ++ E++   A  F N L + L   GQ           R+R VW+  + +
Sbjct: 723 VWLQAQSLFDKVN-EMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWENVWSD 781

Query: 686 KLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYG-VVPRRIKLVTG-- 742
                           LD+  +S GAA   V   L   R  ++Y G  +P+ + ++TG  
Sbjct: 782 SC--------------LDLHLMSSGAARAMVHAWLLNIRS-IVYEGHELPKVLSILTGWG 826

Query: 743 --------PTLKIVIAQMLSSVESPFEVSKVVL---RAPGDSVMEWFKKPIVQQFLL 788
                     L+  +  +L  +++PF +SK  +    + G  V  W ++    + L+
Sbjct: 827 KHSKVVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATLKLLI 883



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 162/358 (45%), Gaps = 2/358 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I  L +  K+ ++   F+            +++ L++ +   GL  +A  ++ SM++  
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298

Query: 301 CSLDGSTYELMIPSLAKSG-RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
              +  TY  +I +  K G       K F EM+    +P    F SL+    + G  + +
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAA 358

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             ++ EM           Y +L+++  K G++D A  +  +M +    PN   ++ +I+ 
Sbjct: 359 RNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDG 418

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
            AK+G+ D A+++F +M   G      +Y+ LL ++   G+ + A+ +   M S G++  
Sbjct: 419 FAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKD 478

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLR 538
           + TY ALL    K+   D   K+  EMK      + ++ S ++  Y K G    A+   R
Sbjct: 479 VVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFR 538

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              S+G+R +  +   L ++  KN L  SA  L++   +     ++V Y S++    R
Sbjct: 539 EFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR 596



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 21/292 (7%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ VI   AKA + + +   F ++      +D  SYN L++++   G   +A +I   M
Sbjct: 411 SYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREM 470

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  ++    K G+ D   K+F EMK  +  P+   +++L+D   K G  
Sbjct: 471 ASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLY 530

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +M+++ E +  G R    +Y +LI++  K G + +A+ L DEM   G  PN   +  I
Sbjct: 531 KEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSI 590

Query: 417 IESHAKSGKLD---------------IAMSIFTDMERA------GFLPTPSTYSCLLEMH 455
           I++  +S  +D                A+S  T+ E        G L T S      +  
Sbjct: 591 IDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCE 650

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
               ++   ++++  M    ++P + T++A+L   ++    + A+ +L E++
Sbjct: 651 EGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELR 702



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 135/302 (44%), Gaps = 6/302 (1%)

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL--FQEMKERNFRPSFNIFASLVDSMGK 352
           S E   C  D  TY  +I  L      D A+    F   +ER       + ++++ ++G+
Sbjct: 188 SFESKLCGSDDCTY--IIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGR 245

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G++  + +++      G+  +   + +LI +Y ++G  + A+ +++ M+  G RPN   
Sbjct: 246 YGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVT 305

Query: 413 FTMIIESHAKSG-KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           +  +I++  K G +       F +M+R G  P   T++ LL + +  G  ++A  L++ M
Sbjct: 306 YNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEM 365

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSV 530
           T+  +   + +Y  LL  + K   +D+A +IL +M       + VS S V+  + K G  
Sbjct: 366 TNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRF 425

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D AL     M   GI  +      L     K    E A  +L        K D+V Y ++
Sbjct: 426 DEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNAL 485

Query: 591 LA 592
           L 
Sbjct: 486 LG 487


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 216/489 (44%), Gaps = 21/489 (4%)

Query: 127 KPFLNASAVAK----------IVEVVNRWKWGPELETQLDK------LQFVPKMV-HITQ 169
           +PF++ S V            + +++N       +E  LD       ++  P  V  + Q
Sbjct: 63  EPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQ 122

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
           ++++    + ++  F WA +Q  YV   EC+V L ++L  S D   +  +F E+     +
Sbjct: 123 SVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFEL---KDR 179

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
             +   SA N +I+       +E     ++++ ++       +YN L+   +N      A
Sbjct: 180 GLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESA 239

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            +++E M+ G+   D  TY +MI    K+G+L  A++ F++M+ +N +P    + +L+ +
Sbjct: 240 EKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQA 299

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
                  DT + +Y+EM+  G       Y  +I    K  K   A  +++ M   G R N
Sbjct: 300 CYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRAN 359

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
             ++T +I+S++K+G ++ AM +F  M+  GF P   TYS L+     SG++D  M+L++
Sbjct: 360 VAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFD 419

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
              + G+      Y +L+  L K   ++ A  +  EM   G + D    + ++    K G
Sbjct: 420 FCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHG 479

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
            +D AL     M   G     +    L +   K    E A    +  ++      +  + 
Sbjct: 480 KIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFR 539

Query: 589 SVLAHLVRC 597
           ++   L  C
Sbjct: 540 ALAIGLCLC 548



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 142/269 (52%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           +I   SY++++     +    +A+ ++E+M +  C  + + Y  +I S +K+G ++ A++
Sbjct: 322 EIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMR 381

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           LF+ MK   F P    ++ LV+ + K+GRLD  M+++   +  G   +A  Y SLI+   
Sbjct: 382 LFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLG 441

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           KAG+++ A  L++EM   G   +   +  II++ AK GK+D A+++F  ME  G   T  
Sbjct: 442 KAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVY 501

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           T++ L++      + + A+K ++ M   G+ P ++++ AL   L     V  A KIL ++
Sbjct: 502 TFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDL 561

Query: 507 KTMGYSVDVSASDVLMVYIKDGSVDHALR 535
             MG   + +  D++    K   +  A +
Sbjct: 562 APMGIIPETAFEDMINTLCKAQRIKEACK 590



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 6/309 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEM 253
           P    Y+ L       RDFD  LSL+ EM     + G+ +   +Y+ VI  L K  K   
Sbjct: 288 PDKITYMTLIQACYSERDFDTCLSLYLEM----EERGLEIPPHSYSLVIGGLCKQRKCME 343

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y  F+ +    C+ +   Y  L+  +   G   +A  ++E M+      D  TY +++ 
Sbjct: 344 AYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVN 403

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L KSGRLD  ++LF   + +    +   +ASL+D +GKAGR++ +  ++ EM   G   
Sbjct: 404 GLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCAR 463

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
            +  Y ++I++ AK GK+D AL L+  M   G       FT++I+   K  K + A+  +
Sbjct: 464 DSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFW 523

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G  PT +++  L       G+V  A K+ + +   G+ P  + +  ++  L K 
Sbjct: 524 DKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPE-TAFEDMINTLCKA 582

Query: 494 KLVDVAAKI 502
           + +  A K+
Sbjct: 583 QRIKEACKL 591



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 123/280 (43%), Gaps = 4/280 (1%)

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           +F E+K+R    + +   SL+ S G  G ++  + V+  M+  G  PS   Y  L+    
Sbjct: 172 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 231

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
            +  +++A ++++ M      P+   + ++I+ + K+GKL  AM  F DME     P   
Sbjct: 232 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 291

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TY  L++   S    D+ + LY  M   GL     +Y+ ++  L K++    A  +   M
Sbjct: 292 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 351

Query: 507 KTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
              G   +V+    L+  Y K+GS++ A+R    M + G   +      L     K+   
Sbjct: 352 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRL 411

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHL---VRCQDEQN 602
           +    L +        ++ + Y S++  L    R +D +N
Sbjct: 412 DDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAEN 451



 Score = 40.4 bits (93), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 4/173 (2%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           CY  + D L +    D  L+LF  M  +     +  F+    +I  L K  K E +   +
Sbjct: 467 CYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTI---LIDGLFKEHKNEEAIKFW 523

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            K++D        S+  L       G   +A +I + +      +  + +E MI +L K+
Sbjct: 524 DKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGI-IPETAFEDMINTLCKA 582

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
            R+  A KL   + +R       I   L++++ KAG  D  +K+     G G+
Sbjct: 583 QRIKEACKLADGIVDRGREIPGRIRTVLINALRKAGNSDLVIKLMHSKIGIGY 635


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 216/489 (44%), Gaps = 21/489 (4%)

Query: 127 KPFLNASAVAK----------IVEVVNRWKWGPELETQLDK------LQFVPKMV-HITQ 169
           +PF++ S V            + +++N       +E  LD       ++  P  V  + Q
Sbjct: 61  EPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQ 120

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
           ++++    + ++  F WA +Q  YV   EC+V L ++L  S D   +  +F E+     +
Sbjct: 121 SVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFEL---KDR 177

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
             +   SA N +I+       +E     ++++ ++       +YN L+   +N      A
Sbjct: 178 GLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESA 237

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            +++E M+ G+   D  TY +MI    K+G+L  A++ F++M+ +N +P    + +L+ +
Sbjct: 238 EKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQA 297

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
                  DT + +Y+EM+  G       Y  +I    K  K   A  +++ M   G R N
Sbjct: 298 CYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRAN 357

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
             ++T +I+S++K+G ++ AM +F  M+  GF P   TYS L+     SG++D  M+L++
Sbjct: 358 VAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFD 417

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
              + G+      Y +L+  L K   ++ A  +  EM   G + D    + ++    K G
Sbjct: 418 FCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHG 477

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
            +D AL     M   G     +    L +   K    E A    +  ++      +  + 
Sbjct: 478 KIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFR 537

Query: 589 SVLAHLVRC 597
           ++   L  C
Sbjct: 538 ALAIGLCLC 546



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 142/269 (52%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           +I   SY++++     +    +A+ ++E+M +  C  + + Y  +I S +K+G ++ A++
Sbjct: 320 EIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMR 379

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           LF+ MK   F P    ++ LV+ + K+GRLD  M+++   +  G   +A  Y SLI+   
Sbjct: 380 LFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLG 439

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           KAG+++ A  L++EM   G   +   +  II++ AK GK+D A+++F  ME  G   T  
Sbjct: 440 KAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVY 499

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           T++ L++      + + A+K ++ M   G+ P ++++ AL   L     V  A KIL ++
Sbjct: 500 TFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDL 559

Query: 507 KTMGYSVDVSASDVLMVYIKDGSVDHALR 535
             MG   + +  D++    K   +  A +
Sbjct: 560 APMGIIPETAFEDMINTLCKAQRIKEACK 588



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 6/309 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEM 253
           P    Y+ L       RDFD  LSL+ EM     + G+ +   +Y+ VI  L K  K   
Sbjct: 286 PDKITYMTLIQACYSERDFDTCLSLYLEM----EERGLEIPPHSYSLVIGGLCKQRKCME 341

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y  F+ +    C+ +   Y  L+  +   G   +A  ++E M+      D  TY +++ 
Sbjct: 342 AYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVN 401

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L KSGRLD  ++LF   + +    +   +ASL+D +GKAGR++ +  ++ EM   G   
Sbjct: 402 GLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCAR 461

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
            +  Y ++I++ AK GK+D AL L+  M   G       FT++I+   K  K + A+  +
Sbjct: 462 DSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFW 521

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G  PT +++  L       G+V  A K+ + +   G+ P  + +  ++  L K 
Sbjct: 522 DKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPE-TAFEDMINTLCKA 580

Query: 494 KLVDVAAKI 502
           + +  A K+
Sbjct: 581 QRIKEACKL 589



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 123/280 (43%), Gaps = 4/280 (1%)

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           +F E+K+R    + +   SL+ S G  G ++  + V+  M+  G  PS   Y  L+    
Sbjct: 170 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 229

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
            +  +++A ++++ M      P+   + ++I+ + K+GKL  AM  F DME     P   
Sbjct: 230 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 289

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TY  L++   S    D+ + LY  M   GL     +Y+ ++  L K++    A  +   M
Sbjct: 290 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 349

Query: 507 KTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
              G   +V+    L+  Y K+GS++ A+R    M + G   +      L     K+   
Sbjct: 350 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRL 409

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHL---VRCQDEQN 602
           +    L +        ++ + Y S++  L    R +D +N
Sbjct: 410 DDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAEN 449



 Score = 40.8 bits (94), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 4/173 (2%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           CY  + D L +    D  L+LF  M  +     +  F+    +I  L K  K E +   +
Sbjct: 465 CYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTI---LIDGLFKEHKNEEAIKFW 521

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            K++D        S+  L       G   +A +I + +      +  + +E MI +L K+
Sbjct: 522 DKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGI-IPETAFEDMINTLCKA 580

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
            R+  A KL   + +R       I   L++++ KAG  D  +K+     G G+
Sbjct: 581 QRIKEACKLADGIVDRGREIPGRIRTVLINALRKAGNSDLVIKLMHSKIGIGY 633


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 136/598 (22%), Positives = 255/598 (42%), Gaps = 32/598 (5%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           +++G+L LF +M H+  +  I     YN ++   +    +E +   F+ + ++    D+ 
Sbjct: 160 EWEGLLGLFAQMRHEGIQPDII---TYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSI 216

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN L+ ++          E+   ME+   + D   Y ++I +  ++G+  AA K+F++M
Sbjct: 217 TYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQM 276

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           +E    P    F++L+++ GK G  D    ++ +M+  G  P    Y +LI+ + + G  
Sbjct: 277 QEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFF 336

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             ++ L+ ++   G  P+   +  ++ S  K G    A  I   M ++   PT   ++ L
Sbjct: 337 QESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGL 396

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +  + ++     A   +NSM  +G +P L TY AL+   A   L   A    L M   G 
Sbjct: 397 ITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGI 456

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           S DVS  + L+  + + G  D A+ + R M  +    N      L        L++ AK 
Sbjct: 457 SADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEAKA 516

Query: 571 L---LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTG 627
               L+   E  +     L  SV A   R  D    + L  +L       +  + G+  G
Sbjct: 517 QFLDLQVGGELPSVDSYCLLLSVCARRNRWDDAS--KVLEEMLEPNMPSIYGVVGGILKG 574

Query: 628 PEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687
            E         V   F G+  +   G+   F N LL  L  +GQ  RA  V+  A +  +
Sbjct: 575 -EMDDGTNWQRVEYAFDGLKVD-GVGSNLRFYNALLEALWCLGQRERACRVFAEARKRGV 632

Query: 688 FPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG----- 742
             +A      + W++DV  +SVGAA+  ++  L   +  +      P  + +VT      
Sbjct: 633 LAEAFS-RSDLMWAIDVHRMSVGAAMTTLIVWLADMKAEIDNKSTFPPLLSIVTKWGDKD 691

Query: 743 --------PTLKIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEIP 792
                   P  + ++   L+++ +PF+ ++         ++ W   P++Q++L    P
Sbjct: 692 PNRDLKSLPAARAILGG-LAAIGAPFDFAEW----NEGRIITW--APVLQKWLAGARP 742



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 184/430 (42%), Gaps = 17/430 (3%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           +D   +L LF++ +R  W  P +  Y ++  ++      D    LF++M  +  +  +  
Sbjct: 52  SDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYS 111

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF-EIY 293
           F+A   +I    +  + E S     ++       +  +YN ++      GL ++    ++
Sbjct: 112 FTA---LINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLF 168

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
             M       D  TY  ++ + +  G ++ A  +F+ M E    P    + +LVD  G+A
Sbjct: 169 AQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQA 228

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
            R +   ++  EM+  G+ P    Y  LIE+Y +AGK   A +++ +M+ AG  P+   F
Sbjct: 229 DRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTF 288

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
           + ++E++ K G  D    +FTDM+  G  P  +TY+ L+++    G    ++ L+  +  
Sbjct: 289 STLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLD 348

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-------KTMGYSVDVSASDVLMVYIK 526
            G+ P +STY  LL    K  L   A KI   M        T G++  ++A     +Y  
Sbjct: 349 GGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALY-- 406

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
                 A      M  SG + +      L  +     LY  A     T ++     D+  
Sbjct: 407 ----SEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVST 462

Query: 587 YTSVLAHLVR 596
           Y S++    R
Sbjct: 463 YNSLIEAFGR 472



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 136/317 (42%), Gaps = 3/317 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  L D+  ++   +G+  L  EM    +   +    AYN +I+   +A K   
Sbjct: 212 VPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVV---AYNILIEAYGRAGKYRA 268

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   FK++ ++ C  D  +++ L+  +   G   +   ++  M++     D +TY  +I 
Sbjct: 269 AAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQ 328

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              + G    +I LF ++ +    P  + +A L+ S GK G    + K++  M      P
Sbjct: 329 VFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTP 388

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   +  LI +Y  A     A   ++ M+ +G +P+   +  +I +HA  G    A S +
Sbjct: 389 TTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAY 448

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G     STY+ L+E     G  D A++    M  A   P   TY AL+ +    
Sbjct: 449 LTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTA 508

Query: 494 KLVDVAAKILLEMKTMG 510
            L D A    L+++  G
Sbjct: 509 GLFDEAKAQFLDLQVGG 525


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 218/464 (46%), Gaps = 11/464 (2%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVP--GDECYVMLFDVLNESRDFDGMLSLFD 221
           ++ I + L   N  D +LSLF + + ++  V         ++  +L ++    G +S   
Sbjct: 109 ILGIIKGLGFNNKFDLALSLFDFIRTRNDRVSLLNGSVIAVIVSILGKT----GRVSRAA 164

Query: 222 EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
            ++H+   +G  +    Y  +I   A   K   +   F K+ +  C+    +YN ++ ++
Sbjct: 165 SLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVY 224

Query: 281 LNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL-DAAIKLFQEMKERNFRP 338
              G+P+ K   + + M+    + D  TY  +I S  ++G L + A+ LF+E+K   FRP
Sbjct: 225 GKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLI-SCCRAGSLYEEALDLFEEIKVAGFRP 283

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               + +L+D  GK+ R   +M+V  +M+    RPS   Y SL+ +Y + G L+ AL L 
Sbjct: 284 DAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLK 343

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
            +M   G +P+   +T ++     +GK ++AM +F +M + G  P   T++ L++M+   
Sbjct: 344 RKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDR 403

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G+ +  +K++  +      P + T+  LL +  +  +    + +  EMK   ++ +    
Sbjct: 404 GKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTF 463

Query: 519 DVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           + L+  Y + GS D A+   + M  +G+  +      +  +  +  L+E ++ +L    +
Sbjct: 464 NTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKD 523

Query: 578 SAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
              K + V Y+S+L      ++ +    L   + +   K HA L
Sbjct: 524 GGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVL 567



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 171/354 (48%), Gaps = 3/354 (0%)

Query: 223 MVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           +V D   +G++     YN +I         E +   F+++  +  + D  +YN L+ ++ 
Sbjct: 237 LVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYG 296

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
               P +A E+ + ME         TY  ++ +  + G L+ A+ L ++M ++  +P   
Sbjct: 297 KSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVY 356

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            + +L+     AG+ + +M+V+ EM+  G +P+   + +LI+ Y   GK +  ++++ E+
Sbjct: 357 TYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEI 416

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
           ++    P+   +  ++    ++G       +F +M+R+ F P   T++ L+  +   G  
Sbjct: 417 KVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSF 476

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDV 520
           D AM  Y  M  AG+ P LSTY A+L  LA+  L + + K+L EMK  G    +V+ S +
Sbjct: 477 DQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSL 536

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK-NALYESAKPLLE 573
           L  Y     V+        + S  I+T+  +++ L     K + L E+ +  LE
Sbjct: 537 LHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLE 590



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 192/451 (42%), Gaps = 40/451 (8%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           + +L LF   K  + + P    Y  L DV  +SR     + +  +M  +S +  +     
Sbjct: 267 EEALDLFEEIK-VAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVV---T 322

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++    +   LE +    +K++D   K D  +Y  L++ F+N G    A E++E M 
Sbjct: 323 YNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMR 382

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K  C  +  T+  +I      G+ +  +K+F+E+K     P    + +L+   G+ G   
Sbjct: 383 KVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDS 442

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
               V+ EM+     P    + +LI +Y + G  D A+  +  M  AG  P+   +  ++
Sbjct: 443 EVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVL 502

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            + A+ G  + +  +  +M+  G  P   TYS LL  +A+  +V+    L   + S  ++
Sbjct: 503 ATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIK 562

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
                   L+ + +K  L+    +  LE +  G S DV+ S+ ++ +Y +   V  A   
Sbjct: 563 THAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEI 622

Query: 537 LRFMGSSGI---------------RTNNF-----IVRQLFESCM---------------K 561
           L FM  SG+               RT NF     I R++ +  +               +
Sbjct: 623 LNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCR 682

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           N + + AK ++E     A   D+V Y + +A
Sbjct: 683 NDMMDEAKRIIEEMKVPAPVPDVVTYNTFIA 713



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/369 (19%), Positives = 155/369 (42%), Gaps = 39/369 (10%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + +F+EM     K  I  F+A   +I+      K E     FK++    C  D  ++N L
Sbjct: 375 MEVFEEMRKVGCKPNICTFNA---LIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTL 431

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           + +F   G+  +   ++E M++   + +  T+  +I +  + G  D A+  ++ M E   
Sbjct: 432 LAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGV 491

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD--TA 394
            P  + + +++ ++ + G  + S KV  EM+  G +P+   Y SL+ +YA   +++   A
Sbjct: 492 SPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNA 551

Query: 395 L---------------------------------RLWDEMRIAGFRPNFGLFTMIIESHA 421
           L                                 R + E R  G  P+      ++  + 
Sbjct: 552 LAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYG 611

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           +   +  A  I   M  +G   + ++Y+ L+ M++ +     + +++  +   G+ P + 
Sbjct: 612 RKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVI 671

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFM 540
           +Y  ++    +  ++D A +I+ EMK      DV   +  +  Y  D     A+  +R+M
Sbjct: 672 SYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYM 731

Query: 541 GSSGIRTNN 549
              G + N+
Sbjct: 732 IKQGCKPNH 740



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/345 (19%), Positives = 141/345 (40%), Gaps = 7/345 (2%)

Query: 162 PKMVHITQALKVI--NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSL 219
           P +V     L V   N  D+ +S      ++S + P  + +  L         FD  ++ 
Sbjct: 423 PDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAA 482

Query: 220 FDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           +  M+    + G+S   S YN V+  LA+    E S     ++ D  CK +  +Y+ L+ 
Sbjct: 483 YKRML----EAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLH 538

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            + N     +   + E +  G         + ++   +K   L    + F E ++R   P
Sbjct: 539 AYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISP 598

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
                 +++   G+   +  + ++   M   G   S   Y SL+  Y++      + +++
Sbjct: 599 DVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIF 658

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
            E+   G  P+   + ++I ++ ++  +D A  I  +M+    +P   TY+  +  +A+ 
Sbjct: 659 REILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAAD 718

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
                A+ +   M   G +P  +TY +++    K KL D A   +
Sbjct: 719 SMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSFV 763



 Score = 45.8 bits (107), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 44/242 (18%), Positives = 100/242 (41%), Gaps = 3/242 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y  L       R+ + M +L +E+   + K    L      ++   +K D L  +
Sbjct: 528 PNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKT---LVLVNSKVDLLVET 584

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F +        D  + N +++++  K +  KA EI   M +   +L  ++Y  ++  
Sbjct: 585 ERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYM 644

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            +++     + ++F+E+ ++   P    +  ++ +  +   +D + ++  EM+     P 
Sbjct: 645 YSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPD 704

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y + I +YA       A+ +   M   G +PN   +  I++ + K    D A S   
Sbjct: 705 VVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSFVQ 764

Query: 435 DM 436
           ++
Sbjct: 765 NL 766


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/529 (22%), Positives = 219/529 (41%), Gaps = 67/529 (12%)

Query: 128 PFLNASAVAKIVEVVN---RWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLF 184
           PF N   V K++++++    W   PEL    ++L    +  H+++ +    ++DT+L  F
Sbjct: 38  PFPNL--VFKVLDLISTDPHWPKNPEL----NRLASTLRPHHVSKIINTHINTDTALQFF 91

Query: 185 RWAKRQSWYVPGDECYVMLFD-----------------VLNESRDFDGMLSLFDEMVH-- 225
            W  ++ +Y     C+V + +                 ++   R+ D +  + D  +H  
Sbjct: 92  YWISKRHFYKHDMGCFVSMLNRLVKDKILAPADHVRILMIKACRNEDELKRVTD-FLHGI 150

Query: 226 ---DSSKNGISLFS----------------------------------AYNRVIQYLAKA 248
              DS   G +L+S                                   +N +I  L K 
Sbjct: 151 SSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKK 210

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K++ +   F K+   D   D  +Y  L+          KAFE+++ M K  C+ +  TY
Sbjct: 211 GKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTY 270

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I  L   GR+  A+ + +EM E+   P+   +   + S+   GR+D ++ +   M  
Sbjct: 271 STLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGK 330

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  PS   Y ++I    +AGK++ A+ ++ +M   G  PN   +  +I      G+  I
Sbjct: 331 KGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGI 390

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+ IF  ME  G L    TY+ +++       ++ AM ++N M   G  P + TY  L+ 
Sbjct: 391 ALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIV 450

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
              KR  ++ A + L  MK      D  +  +++  + K G +D A  +   M   GI  
Sbjct: 451 ENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISP 510

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           N +    + +   K    + A  L E   E+     +  Y ++++ L +
Sbjct: 511 NQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSK 559



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 174/401 (43%), Gaps = 6/401 (1%)

Query: 223 MVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           +V    K G S     Y  +I  L +A K+E++   + K+L      +T +YN L+    
Sbjct: 324 LVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELC 383

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
            +G    A +I++ ME      +  TY  +I  L     ++ A+ +F +M +    P+  
Sbjct: 384 TEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVV 443

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            + +L+    K G L+ + +    M+     P    Y  LI  + K GKLD+A   + EM
Sbjct: 444 TYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEM 503

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G  PN   +T +I+ + K GK+D+A+S+F  ME  G   +  TY+ ++   +   + 
Sbjct: 504 LKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRF 563

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDV 520
             A K    MT  GL+P   TYT+L+  L K    ++A KI  EM+      +  + + +
Sbjct: 564 SEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSL 623

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +    ++G VD A R         I T + +V  L      N     A  L+E   E   
Sbjct: 624 IYGLCQEGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSN----EASQLVENMKEKGL 679

Query: 581 KVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
              + +Y S+L    +         +  +++    + H F+
Sbjct: 680 SPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFI 720



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 140/307 (45%), Gaps = 5/307 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    K  KL+ +   F ++L      +  +Y  ++  +  +G    A  ++E M
Sbjct: 479 TYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERM 538

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+  CS    TY  +I  L+K  R   A K   +M E+  +P+   + SL++ + K    
Sbjct: 539 EENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTAT 598

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + K++ EM+     P+A  Y SLI    + GK+D A RL +     G  P    ++ +
Sbjct: 599 NLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTEN----GCEPTIDTYSTL 654

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    + G+ + A  +  +M+  G  P+   Y  LL  H  S +VD A++++N M   G 
Sbjct: 655 VSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGF 714

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P L  Y  L+  L      + A  I   +    ++ D+    VL+   +++G  D  ++
Sbjct: 715 QPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMK 774

Query: 536 WLRFMGS 542
           +L  M S
Sbjct: 775 FLYLMES 781



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 168/392 (42%), Gaps = 8/392 (2%)

Query: 210 SRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           +R  D    +FD MV D    N ++    Y+ +I  L    ++  +    +++ +   + 
Sbjct: 245 NRKLDKAFEVFDRMVKDGCNPNSVT----YSTLINGLCNEGRIGEAMDMLEEMTEKGIEP 300

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
              +Y V ++   + G    A  +  SM K  CS    TY  +I  L ++G+++ AI ++
Sbjct: 301 TVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMY 360

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +M +    P+   + +L++ +   GR   ++K++  M+G G   +A  Y  +I+     
Sbjct: 361 HKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGM 420

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
             ++ A+ ++++M   G  P    +  +I  + K G L+ A      M+ +   P   TY
Sbjct: 421 DDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTY 480

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             L+      G++DSA   +  M   G+ P   TYTA++    K   +DVA  +   M+ 
Sbjct: 481 CELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEE 540

Query: 509 MGYSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G S  +   + ++  +  G+    A ++   M   G++ N      L     KN     
Sbjct: 541 NGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNL 600

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A  +     +     +   YTS++  L  CQ+
Sbjct: 601 AFKIFHEMEKKNCLPNAHTYTSLIYGL--CQE 630



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 148/318 (46%), Gaps = 12/318 (3%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL- 234
           DS TS   F +   +    P    Y  + D   +    D  LSLF+ M     +NG S  
Sbjct: 494 DSATS---FFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERM----EENGCSAS 546

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              YN +I  L+K ++   +     K+ +   + +T +Y  L+           AF+I+ 
Sbjct: 547 IETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFH 606

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            MEK  C  +  TY  +I  L + G++DAA    + + E    P+ + +++LV  + + G
Sbjct: 607 EMEKKNCLPNAHTYTSLIYGLCQEGKVDAA----ERLTENGCEPTIDTYSTLVSGLCREG 662

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R + + ++   M+  G  PS  +Y SL+ ++ K+ K+D AL +++ M + GF+P+  ++ 
Sbjct: 663 RSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYK 722

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I +     + + A++IF  + +  +      ++ L++     G  D  MK    M S 
Sbjct: 723 VLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESR 782

Query: 475 GLRPGLSTYTALLTLLAK 492
              P L TY  L   L+K
Sbjct: 783 NCTPSLHTYIILARELSK 800



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 152/327 (46%), Gaps = 11/327 (3%)

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVI 242
           F +  ++S   P +  Y  L     +    D   S F EM+    K GIS     Y  +I
Sbjct: 464 FLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEML----KCGISPNQWTYTAMI 519

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ESMEKGEC 301
               K  K++++   F+++ ++ C    ++YN +++  L+KG  +   E +   M +   
Sbjct: 520 DGYCKEGKIDVALSLFERMEENGCSASIETYNAIIS-GLSKGNRFSEAEKFCAKMTEQGL 578

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
             +  TY  +I  L K+   + A K+F EM+++N  P+ + + SL+  + + G++D + +
Sbjct: 579 QPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAER 638

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
             +   GC   P+   Y +L+    + G+ + A +L + M+  G  P+  ++  ++ +H 
Sbjct: 639 --LTENGC--EPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHC 694

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           KS K+D A+ IF  M   GF P    Y  L+       + + A+ ++ S+        L 
Sbjct: 695 KSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLI 754

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKT 508
            +T L+  L +    D+  K L  M++
Sbjct: 755 VWTVLVDGLLQEGDSDLCMKFLYLMES 781


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/473 (22%), Positives = 212/473 (44%), Gaps = 13/473 (2%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           +  + +++    WG  +E +L +L   P    +   L+ + D + +++ FRWA+R +   
Sbjct: 68  IDSVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLTDRA 127

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN----RVIQYLAKADK 250
              E Y  L  V+  +R F+ +  + +EM        I+ F   N     ++    K+ K
Sbjct: 128 HCREAYNSLLMVMARTRKFNCLEQILEEM-------SIAGFGPSNNTCIEIVLSFIKSRK 180

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           L  ++   + +     +    +Y  L+              +++ M++   +++   +  
Sbjct: 181 LREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTT 240

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I   A+ GR+DAA+ L  EMK  +  P   ++   +D  GKAG++D + K + EM+  G
Sbjct: 241 LIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANG 300

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
                  Y S+I    KA +L+ A+ L++ M      P    +  +I  +  +GK + A 
Sbjct: 301 LVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAY 360

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           S+     R G +P+  +Y+C+L      GQVD A+K +  M    + P LSTY  ++ +L
Sbjct: 361 SLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDML 419

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K   ++ A  +   MK  G   +V   ++++  + K   +D A      +     R + 
Sbjct: 420 CKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDA 479

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
                L E   ++   + A  L E  +++    + V+YTS++ +  +C  +++
Sbjct: 480 VTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKED 532



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 193/442 (43%), Gaps = 40/442 (9%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           V  D  Y  +  VL ++   +  + LF+ M  D +K  +    AYN +I     A K E 
Sbjct: 302 VLDDVTYTSMIGVLCKADRLNEAVELFEHM--DQNKQ-VPCAYAYNTMIMGYGMAGKFED 358

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y   ++     C     SYN +++    KG   +A + +E M+K +   + STY +MI 
Sbjct: 359 AYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKK-DAIPNLSTYNIMID 417

Query: 314 SLAKSG-----------------------------------RLDAAIKLFQEMKERNFRP 338
            L K+G                                   RLD A  +F+ +  +  RP
Sbjct: 418 MLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRP 477

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               + SL++ +G+ GR+D + K+Y +M      P+A +Y SLI ++ K G+ +   +++
Sbjct: 478 DAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIY 537

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           +EM   G  P+  L    ++   K+G+++   ++F +++  GF+P   +Y+ L+     +
Sbjct: 538 NEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKA 597

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSA 517
           G    A +L+ +M   G       Y  ++    K   V+ A ++L EMKT G+    V+ 
Sbjct: 598 GFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTY 657

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
             V+    K   +D A        S GI  N  I   L +   K    + A  ++E  ++
Sbjct: 658 GSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQ 717

Query: 578 SAAKVDLVLYTSVLAHLVRCQD 599
                ++  +  +L  LV+ ++
Sbjct: 718 KGLTPNVYTWNCLLDALVKAEE 739



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 153/313 (48%), Gaps = 4/313 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            R  DG   +++EM+       + L + Y   +  + KA ++E     F+++ +     D
Sbjct: 528 GRKEDGH-KIYNEMLRLGCSPDLLLLNTY---MDCVFKAGEIEKGRALFQEIKNLGFIPD 583

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            +SY +L+   +  G  ++A+E++ +M++  C LD   Y  +I    KSG+++ A +L +
Sbjct: 584 ARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLE 643

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EMK +   P+   + S++D + K  RLD +  ++ E +  G   +  +Y SLI+ + K G
Sbjct: 644 EMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVG 703

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++D A  + +E+   G  PN   +  ++++  K+ ++  A+  F  M+     P   TYS
Sbjct: 704 RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYS 763

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+       + + A   +  M   G +P + TYT +++ LAK   +  A  +  + K  
Sbjct: 764 ILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEK 823

Query: 510 GYSVDVSASDVLM 522
           G   D +  + ++
Sbjct: 824 GGVADSAIYNAII 836



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 135/286 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L KA     +Y  F  + +  C +DT++YN ++  F   G   KA+++ E M
Sbjct: 586 SYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEM 645

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +         TY  +I  LAK  RLD A  LF+E K +    +  I++SL+D  GK GR+
Sbjct: 646 KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRI 705

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  +  E+   G  P+   +  L+++  KA ++  AL  +  M+     PN+  ++++
Sbjct: 706 DEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSIL 765

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K  K + A   + +M++ GF P   TY+ ++   A +G +  A  L+      G 
Sbjct: 766 IHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGG 825

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
               + Y A++  L+       A ++  E +  G S+      VL+
Sbjct: 826 VADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLL 871



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 152/338 (44%), Gaps = 4/338 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D + S+F     ++   P    Y  L + L      D    L+++M+     N I     
Sbjct: 461 DDACSIFEGLDHKTCR-PDAVTYCSLIEGLGRHGRVDEAYKLYEQML---DANQIPNAVV 516

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I+   K  + E  +  + ++L   C  D    N  M      G   K   +++ ++
Sbjct: 517 YTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIK 576

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  +Y ++I  L K+G    A +LF  MKE+        + +++D   K+G+++
Sbjct: 577 NLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVN 636

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + ++  EM+  GH P+   Y S+I+  AK  +LD A  L++E +  G   N  +++ +I
Sbjct: 637 KAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLI 696

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K G++D A  I  ++ + G  P   T++CLL+    + ++  A+  + SM      
Sbjct: 697 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCT 756

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           P   TY+ L+  L K +  + A     EM+  G+  +V
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNV 794


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/473 (22%), Positives = 212/473 (44%), Gaps = 13/473 (2%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           +  + +++    WG  +E +L +L   P    +   L+ + D + +++ FRWA+R +   
Sbjct: 68  IDSVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLTDRA 127

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN----RVIQYLAKADK 250
              E Y  L  V+  +R F+ +  + +EM        I+ F   N     ++    K+ K
Sbjct: 128 HCREAYNSLLMVMARTRKFNCLEQILEEM-------SIAGFGPSNNTCIEIVLSFIKSRK 180

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           L  ++   + +     +    +Y  L+              +++ M++   +++   +  
Sbjct: 181 LREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTT 240

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I   A+ GR+DAA+ L  EMK  +  P   ++   +D  GKAG++D + K + EM+  G
Sbjct: 241 LIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANG 300

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
                  Y S+I    KA +L+ A+ L++ M      P    +  +I  +  +GK + A 
Sbjct: 301 LVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAY 360

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           S+     R G +P+  +Y+C+L      GQVD A+K +  M    + P LSTY  ++ +L
Sbjct: 361 SLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDML 419

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K   ++ A  +   MK  G   +V   ++++  + K   +D A      +     R + 
Sbjct: 420 CKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDA 479

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
                L E   ++   + A  L E  +++    + V+YTS++ +  +C  +++
Sbjct: 480 VTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKED 532



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 193/442 (43%), Gaps = 40/442 (9%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           V  D  Y  +  VL ++   +  + LF+ M  D +K  +    AYN +I     A K E 
Sbjct: 302 VLDDVTYTSMIGVLCKADRLNEAVELFEHM--DQNKQ-VPCAYAYNTMIMGYGMAGKFED 358

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y   ++     C     SYN +++    KG   +A + +E M+K +   + STY +MI 
Sbjct: 359 AYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKK-DAIPNLSTYNIMID 417

Query: 314 SLAKSG-----------------------------------RLDAAIKLFQEMKERNFRP 338
            L K+G                                   RLD A  +F+ +  +  RP
Sbjct: 418 MLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRP 477

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               + SL++ +G+ GR+D + K+Y +M      P+A +Y SLI ++ K G+ +   +++
Sbjct: 478 DAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIY 537

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           +EM   G  P+  L    ++   K+G+++   ++F +++  GF+P   +Y+ L+     +
Sbjct: 538 NEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKA 597

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSA 517
           G    A +L+ +M   G       Y  ++    K   V+ A ++L EMKT G+    V+ 
Sbjct: 598 GFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTY 657

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
             V+    K   +D A        S GI  N  I   L +   K    + A  ++E  ++
Sbjct: 658 GSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQ 717

Query: 578 SAAKVDLVLYTSVLAHLVRCQD 599
                ++  +  +L  LV+ ++
Sbjct: 718 KGLTPNVYTWNCLLDALVKAEE 739



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 153/313 (48%), Gaps = 4/313 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            R  DG   +++EM+       + L + Y   +  + KA ++E     F+++ +     D
Sbjct: 528 GRKEDGH-KIYNEMLRLGCSPDLLLLNTY---MDCVFKAGEIEKGRALFQEIKNLGFIPD 583

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            +SY +L+   +  G  ++A+E++ +M++  C LD   Y  +I    KSG+++ A +L +
Sbjct: 584 ARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLE 643

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EMK +   P+   + S++D + K  RLD +  ++ E +  G   +  +Y SLI+ + K G
Sbjct: 644 EMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVG 703

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++D A  + +E+   G  PN   +  ++++  K+ ++  A+  F  M+     P   TYS
Sbjct: 704 RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYS 763

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+       + + A   +  M   G +P + TYT +++ LAK   +  A  +  + K  
Sbjct: 764 ILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEK 823

Query: 510 GYSVDVSASDVLM 522
           G   D +  + ++
Sbjct: 824 GGVADSAIYNAII 836



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 135/286 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L KA     +Y  F  + +  C +DT++YN ++  F   G   KA+++ E M
Sbjct: 586 SYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEM 645

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +         TY  +I  LAK  RLD A  LF+E K +    +  I++SL+D  GK GR+
Sbjct: 646 KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRI 705

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  +  E+   G  P+   +  L+++  KA ++  AL  +  M+     PN+  ++++
Sbjct: 706 DEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSIL 765

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K  K + A   + +M++ GF P   TY+ ++   A +G +  A  L+      G 
Sbjct: 766 IHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGG 825

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
               + Y A++  L+       A ++  E +  G S+      VL+
Sbjct: 826 VADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLL 871



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 152/338 (44%), Gaps = 4/338 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D + S+F     ++   P    Y  L + L      D    L+++M+     N I     
Sbjct: 461 DDACSIFEGLDHKTCR-PDAVTYCSLIEGLGRHGRVDEAYKLYEQML---DANQIPNAVV 516

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I+   K  + E  +  + ++L   C  D    N  M      G   K   +++ ++
Sbjct: 517 YTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIK 576

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  +Y ++I  L K+G    A +LF  MKE+        + +++D   K+G+++
Sbjct: 577 NLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVN 636

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + ++  EM+  GH P+   Y S+I+  AK  +LD A  L++E +  G   N  +++ +I
Sbjct: 637 KAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLI 696

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K G++D A  I  ++ + G  P   T++CLL+    + ++  A+  + SM      
Sbjct: 697 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCT 756

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           P   TY+ L+  L K +  + A     EM+  G+  +V
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNV 794


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 180/397 (45%), Gaps = 39/397 (9%)

Query: 172 KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSL------------ 219
           K+ N    +LS FRWA++QS +    E +  L + L + R F  + +L            
Sbjct: 95  KLSNAGVLALSFFRWAEKQSEFKHTTEAFHALIEALGKIRQFKMIWTLVNDMKQRKLLTS 154

Query: 220 ----------------------FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCC 257
                                 F++M H   K  +S F   N+++  L K+  +E ++  
Sbjct: 155 DTFSLVARRYARARKAKEAIKTFEKMEHYGLKPHVSDF---NKLVDVLCKSKSVEEAHEV 211

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           F K+       D +SY +L+  +  +    K  E+   ME     LD   Y +++ +  K
Sbjct: 212 FDKMRKLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCK 271

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           + + D AI L+ EMK R  RPS +++ +L++ +G   RLD +++ +   +  G  P AP 
Sbjct: 272 AKKFDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPT 331

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +++ +Y  + ++D A R+  EM+  G  PN   F +++    K  +++ A S+F  M 
Sbjct: 332 YNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMN 391

Query: 438 RA--GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
               G  P+ STY  ++ M  +   +D A+ +++ M   G+ PG+  ++ L+  L     
Sbjct: 392 GGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHESK 451

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDH 532
           +D A K   EM  +G          L   + D  ++H
Sbjct: 452 LDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEH 488



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG-ISLFS 236
           D ++ L+   K +    P    Y  L + L   +  D  L  F+     S  +G +    
Sbjct: 276 DEAIGLYHEMKARG-VRPSPHVYCTLINGLGSDKRLDEALEFFEV----SKASGFVPEAP 330

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN V+     + +++ +Y    ++       +++++++++   +      +A  ++  M
Sbjct: 331 TYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRM 390

Query: 297 EKGE--CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
             GE  C    STYE+M+        LD A+ ++ EMK +   P  ++F++LV ++    
Sbjct: 391 NGGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHES 450

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           +LD + K + EM   G RP A M+ +L E+   AG    A+  
Sbjct: 451 KLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEHVAMHF 493


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 150/696 (21%), Positives = 277/696 (39%), Gaps = 102/696 (14%)

Query: 141 VVNRWKWGPELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSL 181
           +V + K+  ++ET ++KL  +P    I + L +                     D   SL
Sbjct: 73  IVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFKEFAARGDWQRSL 132

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI----SLFSA 237
            LF++ +RQ W  P +  Y ++  +L      +    +FDEM        +    +L +A
Sbjct: 133 RLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINA 192

Query: 238 YNRVIQYLAKADKLE-----------MSY-----CCFKKVLD-------------SDCKI 268
           Y R  QY    + LE           ++Y      C +  LD                + 
Sbjct: 193 YGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQP 252

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN L++    +GL  +A  ++++M +G    + +TY  ++ +  K G+L+    L 
Sbjct: 253 DLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLL 312

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM+   + P  + +  L+++  K G +  +M V+ +MQ  G  P+A  Y  L+  Y K 
Sbjct: 313 KEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKH 372

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD------------- 435
           G+ D    L+ +M+ +   P+   + ++I    + G     +++F D             
Sbjct: 373 GRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETY 432

Query: 436 ----------------------MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
                                 M   G +P+   YS L+E +  +   D A+  +N+M  
Sbjct: 433 EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNE 492

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDH 532
            G +  + TY +L+   A+  L      IL  M+  G S +  S S ++  Y + G  + 
Sbjct: 493 VGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEE 552

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFES-----CMKNALYESAKPLLETYVESAAKVDLVLY 587
           A++   F+    +R    +  Q  E      C    + ES +  +E    S     ++ Y
Sbjct: 553 AIK--AFVEMEKMRCE--LDEQTLEGVLGVYCFAGLVDESKEQFIEIKA-SGILPSVLCY 607

Query: 588 TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGID 647
             +LA   +     +   L+  +  T+  +   + G     +         V   F  ++
Sbjct: 608 CMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLN 667

Query: 648 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQ-HIAWSLDVRN 706
            E   G    F N LL  L  +GQ  RA  V   A +  LFP+  +F Q  + WS+DV  
Sbjct: 668 AE-GCGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPE--LFRQSKLVWSVDVHR 724

Query: 707 LSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG 742
           +  G A  AV   +++  + ++    +P+   +V G
Sbjct: 725 MWEGGAYTAVSLWVNKMNEMLMDGEDLPQLAAVVVG 760


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 1/363 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I+   K  + + +     ++ +  C ++T +YNVL+      G   +AF   + ME
Sbjct: 247 YSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 306

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 DG TY  +I  L KS R + A  L  EM     +P+  ++A+L+D   + G  D
Sbjct: 307 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 366

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + K+  EM   G +P+   Y +L+    K G++D A  L  +M     RP+   + +II
Sbjct: 367 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 426

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E H +      A  + ++ME AG  P   TYS ++     SG+ + A  L   MT+ GL+
Sbjct: 427 EGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK 486

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P    Y  L++   +   V +A +I  +M  +    D+   + L+  + K G V+ + ++
Sbjct: 487 PNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKY 546

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              M   G+  N F    L    +KN   ESA+ L++  +++  K + V+Y  +L    +
Sbjct: 547 FAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFK 606

Query: 597 CQD 599
             D
Sbjct: 607 SDD 609



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 174/408 (42%), Gaps = 46/408 (11%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L D      + D    +  EMV    + N I+    Y+ +++ L K  +++ +    
Sbjct: 352 YANLIDGFMREGNADEAFKMIKEMVAAGVQPNKIT----YDNLVRGLCKMGQMDRASLLL 407

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           K+++    + DT +YN+++           AF +   ME    S +  TY +MI  L +S
Sbjct: 408 KQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQS 467

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFA---------------------------------- 344
           G  + A  L +EM  +  +P+  ++A                                  
Sbjct: 468 GEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 527

Query: 345 -SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            SL+  + K GR++ S K + +MQ  G  P+   Y  LI  Y K G L++A +L   M  
Sbjct: 528 NSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLD 587

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G +PN  ++  ++ES+ KS  ++   S F  M   G +     Y  L+   +SSG +++
Sbjct: 588 TGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEA 647

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523
           A ++ + +   G  P +  Y++L++ L K    + A  IL EM   G   ++   + L+ 
Sbjct: 648 AFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALID 707

Query: 524 YI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE-SC----MKNALY 565
            + K G + +A      + + G+  N      L + SC    + NA Y
Sbjct: 708 GLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFY 755



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 150/338 (44%), Gaps = 3/338 (0%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           +FD+M   +  N +     YN +I  L+K  ++E S   F ++ +     +  +Y+ L+ 
Sbjct: 511 IFDKM---TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIH 567

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +L  G    A ++ + M       +   Y  ++ S  KS  ++     F+ M ++    
Sbjct: 568 GYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVML 627

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
              I+  L+ ++  +G ++ + +V   ++  G  P   +Y SLI    K    + A  + 
Sbjct: 628 DNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGIL 687

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           DEM   G  PN   +  +I+   KSG +  A ++F  +   G +P   TY+ L++     
Sbjct: 688 DEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKV 747

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G + +A  LYN M + G+ P    Y+ L T  +    ++ A  ++ EM   G++   S +
Sbjct: 748 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFN 807

Query: 519 DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
           +++  + K G +   L+ L  +   G+  N   +  + 
Sbjct: 808 NLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 845



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 179/433 (41%), Gaps = 13/433 (3%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           +  ++++ +  KSGR+  A ++   M++R   PS     +L+  + +A  +    KV   
Sbjct: 175 AVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREF 234

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M G G  P    Y +LIE+Y K  + DTA ++  EMR  G   N   + ++I    +SG 
Sbjct: 235 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 294

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           ++ A     DME  G +P   TY  L+     S + + A  L + M+ A L+P +  Y  
Sbjct: 295 VEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYAN 354

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
           L+    +    D A K++ EM   G   + ++  +++    K G +D A   L+ M    
Sbjct: 355 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 414

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
            R +      + E   ++   + A  LL     +    ++  Y+ ++  L +  + +   
Sbjct: 415 HRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 474

Query: 605 HLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLN 664
            L+  ++    K +AF+         R+  V S   E F  +  ++      Y  N L+ 
Sbjct: 475 DLLEEMTTKGLKPNAFVYAPLISGYCREGNV-SLACEIFDKMT-KVNVLPDLYCYNSLIF 532

Query: 665 YLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFR 724
            L  +G++  +   +    E  L P    +   I   L   +L     L+          
Sbjct: 533 GLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLV---------- 582

Query: 725 KRMLYYGVVPRRI 737
           +RML  G+ P  +
Sbjct: 583 QRMLDTGLKPNDV 595



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 1/308 (0%)

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
           +++ E M     S D  TY  +I +  K    D A K+  EM+ER    +   +  L+  
Sbjct: 229 WKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAG 288

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + ++G ++ +     +M+  G  P    Y +LI    K+ + + A  L DEM  A  +PN
Sbjct: 289 LCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPN 348

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
             ++  +I+   + G  D A  +  +M  AG  P   TY  L+      GQ+D A  L  
Sbjct: 349 VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLK 408

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDG 528
            M     RP   TY  ++    +      A ++L EM+  G S +V    +++  + + G
Sbjct: 409 QMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSG 468

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
             + A   L  M + G++ N F+   L     +      A  + +   +     DL  Y 
Sbjct: 469 EPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYN 528

Query: 589 SVLAHLVR 596
           S++  L +
Sbjct: 529 SLIFGLSK 536



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 124/296 (41%), Gaps = 24/296 (8%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P   CY  L D L +S D     ++F+ ++   +K  +     Y  +I    K   +  +
Sbjct: 697 PNIVCYNALIDGLCKSGDISYARNVFNSIL---AKGLVPNCVTYTSLIDGSCKVGDISNA 753

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKG-LPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +  + ++L +    D   Y+VL T   + G L    F I E   +G  S+  S++  ++ 
Sbjct: 754 FYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASI--SSFNNLVD 811

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              K G++   +KL   +  R   P+     +++  + +AG+L     +++E+Q      
Sbjct: 812 GFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSES 871

Query: 374 SAPMYVSL------------------IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +A  + SL                  I  + K G LD AL L D +           +  
Sbjct: 872 AARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLA 931

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           I+++  + GKL  A+++  +M++ G  P+ +    LL    +SG +     + ++M
Sbjct: 932 IVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQEHNTVLDNM 987


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 150/696 (21%), Positives = 277/696 (39%), Gaps = 102/696 (14%)

Query: 141 VVNRWKWGPELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSL 181
           +V + K+  ++ET ++KL  +P    I + L +                     D   SL
Sbjct: 73  IVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFKEFAARGDWQRSL 132

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI----SLFSA 237
            LF++ +RQ W  P +  Y ++  +L      +    +FDEM        +    +L +A
Sbjct: 133 RLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINA 192

Query: 238 YNRVIQYLAKADKLE-----------MSY-----CCFKKVLD-------------SDCKI 268
           Y R  QY    + LE           ++Y      C +  LD                + 
Sbjct: 193 YGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQP 252

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN L++    +GL  +A  ++++M +G    + +TY  ++ +  K G+L+    L 
Sbjct: 253 DLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLL 312

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM+   + P  + +  L+++  K G +  +M V+ +MQ  G  P+A  Y  L+  Y K 
Sbjct: 313 KEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKH 372

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD------------- 435
           G+ D    L+ +M+ +   P+   + ++I    + G     +++F D             
Sbjct: 373 GRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETY 432

Query: 436 ----------------------MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
                                 M   G +P+   YS L+E +  +   D A+  +N+M  
Sbjct: 433 EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNE 492

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDH 532
            G +  + TY +L+   A+  L      IL  M+  G S +  S S ++  Y + G  + 
Sbjct: 493 VGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEE 552

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFES-----CMKNALYESAKPLLETYVESAAKVDLVLY 587
           A++   F+    +R    +  Q  E      C    + ES +  +E    S     ++ Y
Sbjct: 553 AIK--AFVEMEKMRCE--LDEQTLEGVLGVYCFAGLVDESKEQFIEIKA-SGILPSVLCY 607

Query: 588 TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGID 647
             +LA   +     +   L+  +  T+  +   + G     +         V   F  ++
Sbjct: 608 CMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLN 667

Query: 648 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQ-HIAWSLDVRN 706
            E   G    F N LL  L  +GQ  RA  V   A +  LFP+  +F Q  + WS+DV  
Sbjct: 668 AE-GCGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPE--LFRQSKLVWSVDVHR 724

Query: 707 LSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG 742
           +  G A  AV   +++  + ++    +P+   +V G
Sbjct: 725 MWEGGAYTAVSLWVNKMNEMLMDGEDLPQLAAVVVG 760


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 163/346 (47%), Gaps = 5/346 (1%)

Query: 259 KKVL----DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           KKVL    +  C ++T +YNVL+      G   +AF   + ME      DG TY  +I  
Sbjct: 242 KKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALING 301

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L KS R + A  L  EM     +P+  ++A+L+D   + G  D + K+  EM   G +P+
Sbjct: 302 LCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 361

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +L+    K G++D A  L  +M     RP+   + +IIE H +      A  + +
Sbjct: 362 KITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLS 421

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +ME AG  P   TYS ++     SG+ + A  L   MT+ GL+P    Y  L++   +  
Sbjct: 422 EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREG 481

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            V +A +I  +M  +    D+   + L+  + K G V+ + ++   M   G+  N F   
Sbjct: 482 NVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS 541

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
            L    +KN   ESA+ L++  +++  K + V+Y  +L    +  D
Sbjct: 542 GLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDD 587



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 175/413 (42%), Gaps = 46/413 (11%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253
           P    Y  L D      + D    +  EMV    + N I+    Y+ +++ L K  +++ 
Sbjct: 325 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKIT----YDNLVRGLCKMGQMDR 380

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +    K+++    + DT +YN+++           AF +   ME    S +  TY +MI 
Sbjct: 381 ASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIH 440

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFA----------------------------- 344
            L +SG  + A  L +EM  +  +P+  ++A                             
Sbjct: 441 GLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLP 500

Query: 345 ------SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
                 SL+  + K GR++ S K + +MQ  G  P+   Y  LI  Y K G L++A +L 
Sbjct: 501 DLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLV 560

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M   G +PN  ++  ++ES+ KS  ++   S F  M   G +     Y  L+   +SS
Sbjct: 561 QRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSS 620

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G +++A ++ + +   G  P +  Y++L++ L K    + A  IL EM   G   ++   
Sbjct: 621 GNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCY 680

Query: 519 DVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE-SC----MKNALY 565
           + L+  + K G + +A      + + G+  N      L + SC    + NA Y
Sbjct: 681 NALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFY 733



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 150/338 (44%), Gaps = 3/338 (0%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           +FD+M   +  N +     YN +I  L+K  ++E S   F ++ +     +  +Y+ L+ 
Sbjct: 489 IFDKM---TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIH 545

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +L  G    A ++ + M       +   Y  ++ S  KS  ++     F+ M ++    
Sbjct: 546 GYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVML 605

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
              I+  L+ ++  +G ++ + +V   ++  G  P   +Y SLI    K    + A  + 
Sbjct: 606 DNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGIL 665

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           DEM   G  PN   +  +I+   KSG +  A ++F  +   G +P   TY+ L++     
Sbjct: 666 DEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKV 725

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G + +A  LYN M + G+ P    Y+ L T  +    ++ A  ++ EM   G++   S +
Sbjct: 726 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFN 785

Query: 519 DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
           +++  + K G +   L+ L  +   G+  N   +  + 
Sbjct: 786 NLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 823



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 1/273 (0%)

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A K+  EM+ER    +   +  L+  + ++G ++ +     +M+  G  P    Y 
Sbjct: 237 EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYG 296

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI    K+ + + A  L DEM  A  +PN  ++  +I+   + G  D A  +  +M  A
Sbjct: 297 ALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 356

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   TY  L+      GQ+D A  L   M     RP   TY  ++    +      A
Sbjct: 357 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDA 416

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            ++L EM+  G S +V    +++  + + G  + A   L  M + G++ N F+   L   
Sbjct: 417 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 476

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             +      A  + +   +     DL  Y S++
Sbjct: 477 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLI 509



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 113/256 (44%), Gaps = 5/256 (1%)

Query: 344 ASLVDSMGKAGRLDTSMKVYMEM--QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            S +++  K    DT+ KV +EM  +GCG   +   Y  LI    ++G ++ A     +M
Sbjct: 226 GSALEAYCKVREFDTAKKVLVEMRERGCGL--NTVTYNVLIAGLCRSGAVEEAFGFKKDM 283

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G  P+   +  +I    KS + + A ++  +M  A   P    Y+ L++     G  
Sbjct: 284 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNA 343

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDV 520
           D A K+   M +AG++P   TY  L+  L K   +D A+ +L +M    +  D ++ + +
Sbjct: 344 DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLI 403

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  + +  S   A R L  M ++GI  N +    +     ++   E A  LLE       
Sbjct: 404 IEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 463

Query: 581 KVDLVLYTSVLAHLVR 596
           K +  +Y  +++   R
Sbjct: 464 KPNAFVYAPLISGYCR 479



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 25/270 (9%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P   CY  L D L +S D     ++F+ ++   +K  +     Y  +I    K   +  +
Sbjct: 675 PNIVCYNALIDGLCKSGDISYARNVFNSIL---AKGLVPNCVTYTSLIDGSCKVGDISNA 731

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKG-LPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +  + ++L +    D   Y+VL T   + G L    F I E   +G  S+  S++  ++ 
Sbjct: 732 FYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASI--SSFNNLVD 789

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              K G++   +KL   +  R   P+     +++  + +AG+L     +++E+Q      
Sbjct: 790 GFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSES 849

Query: 374 SAPMYVSL------------------IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +A  + SL                  I  + K G LD AL L D +           +  
Sbjct: 850 AARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLA 909

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFL-PT 444
           I+++  + GKL  A+++  +M++ G L PT
Sbjct: 910 IVDNLCRKGKLSEALNLLKEMDKRGNLQPT 939


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/433 (23%), Positives = 186/433 (42%), Gaps = 41/433 (9%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +LS F WA  +  +    E Y  + D+  + R+FD    + D                  
Sbjct: 125 ALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVID------------------ 166

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
                L KA  +E+S                +++++L+  ++  GL  +A   +  ME  
Sbjct: 167 -----LMKARNVEIS---------------IETFSILIRRYVRAGLASEAVHAFNRMEDY 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
            C  D   + ++I  L +  R   A   F  +K++ F P   ++ +LV    +AG +  +
Sbjct: 207 NCKPDKIAFSILISILCRKRRATEAQSFFDSLKDK-FEPDVIVYTNLVRGWCRAGNIPEA 265

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            +V+ EM+  G  P+   Y  +I++  + G++  A  ++ EM   G  PN   F  ++  
Sbjct: 266 ERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRV 325

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           H K+G+ +  + ++  M+R G  P   TY+ L+E H   G +D A+K+ NSM   G  P 
Sbjct: 326 HVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPN 385

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLR 538
            ST+  L   +AK + V+ A ++  +MK +    +    ++LM +++   S D  L+  +
Sbjct: 386 ASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKK 445

Query: 539 FMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
            M    +  N N     +   C       + K   E   E   K  L +Y  VL  L + 
Sbjct: 446 EMDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKA 505

Query: 598 QDEQNERHLMAIL 610
              +    L+A++
Sbjct: 506 GQLKKHEELVAVM 518


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 173/352 (49%), Gaps = 8/352 (2%)

Query: 204 FDVLNESRDFDGML--SLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKK 260
           F+ L  +R   G +  +L  +++++  ++GI      YN +I   ++   LE +   F  
Sbjct: 287 FNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSD 346

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +    C+ D  +YN +++++       KA E+++ +E      D  TY  ++ + ++ G 
Sbjct: 347 MESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGN 406

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
            +    + +EM +R F      + +++   GK GR D +M++Y +M+  G  P A  Y  
Sbjct: 407 TEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTV 466

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI+S  KA K++ A  +  EM  AG +P    ++ +I ++AK+GK + A   F  M R+G
Sbjct: 467 LIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSG 526

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P    YS +L+      ++  AM LY+ M   G  P    Y  ++  L +  + DV  
Sbjct: 527 IKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVD 586

Query: 501 KILLEMKTM-GYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
           +I+ +M+ + G +  V +S    V +K G  DHA + L+   S+G   ++ I
Sbjct: 587 RIIRDMEELSGMNPQVISS----VLVKGGCYDHAAKMLKVAISNGYELDHEI 634



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 163/359 (45%), Gaps = 4/359 (1%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           ++  L KA++  ++   F +  +S      Q YN +M ++   G   K  E+ + M +  
Sbjct: 221 ILGVLGKANQEALAVEIFARA-ESSVGDTVQVYNAMMGVYARNGRFSKVKELLDLMRERG 279

Query: 301 CSLDGSTYELMIPSLAKSGRLDA--AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
           C  D  ++  +I +  KSG ++   A++L  E++    RP    + +L+ +  +   L+ 
Sbjct: 280 CVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEE 339

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++ V+ +M+    +P    Y ++I  Y +  +   A  L+ E+   GF P+   +  ++ 
Sbjct: 340 AVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLY 399

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           + ++ G  +    I  +M + GF     TY+ ++ M+   G+ D AM++Y  M S+G  P
Sbjct: 400 AFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNP 459

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWL 537
              TYT L+  L K   V+ AA ++ EM   G    + + S ++  Y K G  + A    
Sbjct: 460 DAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETF 519

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             M  SGI+ +      + +  ++    + A  L    +      D  LY  ++  LVR
Sbjct: 520 NCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVR 578



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 142/688 (20%), Positives = 284/688 (41%), Gaps = 113/688 (16%)

Query: 218  SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID--TQSYNV 275
            ++++ ++ +  +N   LF   +++   + + + +E S C ++ ++   C++D    ++++
Sbjct: 703  TMYESLIQECIQN--ELFDVASQIFSDM-RFNGVESSECLYQGMVSVYCRMDLPETAHHL 759

Query: 276  L-------------MTLFLNKGLPYKAFEIYESME------KGECS-LDGSTYELMIPSL 315
            L             ++++++    Y   +I++  E      +  CS +D   +  +I + 
Sbjct: 760  LYHAEKNGIILDNDISVYIDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAY 819

Query: 316  AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            A SG  + A  +F  M      P+ +    L+ ++    RL+    V  E+Q  G + S 
Sbjct: 820  AFSGCYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISK 879

Query: 376  PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
               +  +E++A+AG L    ++++ M+ AG+ P   ++ +++    K  ++    ++  +
Sbjct: 880  SSILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCE 939

Query: 436  MERAGFL-----------------------------------PTPSTYSCLLEMHASSGQ 460
            ME AGF                                    P   TY+ L+ M+    +
Sbjct: 940  MEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRR 999

Query: 461  VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
             +    L N M S GL P L TY +L+T   K+++ + A ++  E+++ GY +D +   +
Sbjct: 1000 PEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHL 1059

Query: 521  LM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
            +M  Y   G    A   L  M  SGI      +  L  S  K+   E A+ +L+    + 
Sbjct: 1060 MMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTG 1119

Query: 580  AKVDLVLYTSVLAHLVRCQD---------EQNERHL------------MAILSATKHKAH 618
              +D + Y+SV+   ++  D         E  E  +             A LS   ++A 
Sbjct: 1120 VVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAI 1179

Query: 619  AFLCGL----FTGP----EQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMG 670
              L  L    F  P    +++ + ++S V +    ++  +E+ AA   VN L++ L    
Sbjct: 1180 VLLNALQDAGFDLPIRLLKEKSESLVSEVDQCLERLE-PVEDNAAFNLVNALVDLLWAFE 1238

Query: 671  QINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYY 730
                A  V+++A +  ++   I       W  D R LS G+AL A +            Y
Sbjct: 1239 LRATASWVFQLAIKRSIYRHDIFRVADKDWGADFRKLSAGSALDASLQG----------Y 1288

Query: 731  GVVPRRIKLVTGP------TLKIVIAQMLSSVESPF---EVSKVVLRAPGDSVMEWFK-K 780
               P+ + L+TG       +L   +   L  + SPF   +  + +L A   S+  W K  
Sbjct: 1289 PESPKSVVLITGTAEYNMVSLDSTLKACLWEMGSPFLPCKTRQGILVAKAHSLRMWLKDS 1348

Query: 781  PIVQQFLLNEIPSRADILMHKMNILFPC 808
            P      L + PS  +  ++ M ++  C
Sbjct: 1349 PFCLDLELKDAPSLPE--LNSMRLIEGC 1374



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/309 (19%), Positives = 141/309 (45%), Gaps = 10/309 (3%)

Query: 324 AIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
           A++L++ +  R+ + P+  + A+++  +GKA +   +++++   +      +  +Y +++
Sbjct: 198 ALELYECLNLRHWYAPNARMVATILGVLGKANQEALAVEIFARAESSVG-DTVQVYNAMM 256

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD--IAMSIFTDMERAG 440
             YA+ G+      L D MR  G  P+   F  +I +  KSG ++  +A+ +  ++ R+G
Sbjct: 257 GVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSG 316

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY+ L+   +    ++ A+ +++ M S   +P L TY A++++  +      A 
Sbjct: 317 IRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAE 376

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++  E+++ G+  D V+ + +L  + ++G+ +        M   G   +      +    
Sbjct: 377 ELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMY 436

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM-----AILSATK 614
            K   ++ A  +      S    D V YT ++  L +    +   ++M     A +  T 
Sbjct: 437 GKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTL 496

Query: 615 HKAHAFLCG 623
           H   A +C 
Sbjct: 497 HTYSALICA 505



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 152/356 (42%), Gaps = 19/356 (5%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++ ++R  K  S   P    Y +L D L ++   +   ++  EM+    K  +  +SA
Sbjct: 443 DQAMQIYRDMK-SSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSA 501

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
              +I   AKA K E +   F  +  S  K D  +Y+V++  FL      KA  +Y  M 
Sbjct: 502 ---LICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMI 558

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +   + D   YE+M+ +L +    D   ++ ++M+E +      I + LV    K G  D
Sbjct: 559 REGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSGMNPQVISSVLV----KGGCYD 614

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + K+       G+     +++S++ SY+ + +   A  L +  R     PN     MI 
Sbjct: 615 HAAKMLKVAISNGYELDHEIFLSIMSSYSSSARYSEACELLEFSREHA--PND--IQMIT 670

Query: 418 ES----HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
           E+      K+ KLD A+  +      G   + + Y  L++    +   D A ++++ M  
Sbjct: 671 EALIIILCKAKKLDAALEEYRSKGELGQFRSCTMYESLIQECIQNELFDVASQIFSDMRF 730

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS---DVLMVYIK 526
            G+      Y  ++++  +  L + A  +L   +  G  +D   S   D++  Y K
Sbjct: 731 NGVESSECLYQGMVSVYCRMDLPETAHHLLYHAEKNGIILDNDISVYIDIVETYGK 786



 Score = 43.5 bits (101), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 122/299 (40%), Gaps = 44/299 (14%)

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
           I  +L+  + KA +LD +++ Y      G   S  MY SLI+   +    D A +++ +M
Sbjct: 669 ITEALIIILCKAKKLDAALEEYRSKGELGQFRSCTMYESLIQECIQNELFDVASQIFSDM 728

Query: 402 RIAGFRPNFGLFTMIIES---------------HAKSGK--LDIAMSIFTDM-ERAGFLP 443
           R  G   +  L+  ++                 HA+     LD  +S++ D+ E  G L 
Sbjct: 729 RFNGVESSECLYQGMVSVYCRMDLPETAHHLLYHAEKNGIILDNDISVYIDIVETYGKLK 788

Query: 444 T-------------------PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
                                  ++ L+  +A SG  + A  ++N+M   G  P + +  
Sbjct: 789 IWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDGPSPTVDSVN 848

Query: 485 ALL-TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV---YIKDGSVDHALRWLRFM 540
            LL  L+  R+L ++   ++ E++ MG  + +S S +L+    + + G++    +    M
Sbjct: 849 GLLQALIVDRRLNELYV-VIQELQDMG--LKISKSSILLTLEAFAQAGNLFEVQKIYNGM 905

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
            ++G      + R +     K       + +L    E+  + DL +  S+L   +  +D
Sbjct: 906 KAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIED 964


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 182/396 (45%), Gaps = 37/396 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I+ L K  K E SY   ++++ + C  D  ++N +M  F       KA E+Y+ M 
Sbjct: 13  YSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMV 72

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D  +Y ++I  LAK G+LD ++K+  EM  R   PS   ++SLV ++ KA R+D
Sbjct: 73  ESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVD 132

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  ++ EM   GH P   M+  LI    +AGK+  A   + +M   G +PN  ++ +++
Sbjct: 133 HASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLL 192

Query: 418 ESHAKSGKLDIAMSIFTDMER-----------------------------------AGFL 442
                SG+L+ A ++F +M+                                    AG++
Sbjct: 193 HGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYV 252

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   T+S L+     +G+++ A++++ SM  AG +P   TYT L++ L + + V  A ++
Sbjct: 253 PNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQAREL 312

Query: 503 LLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFM-GSSGIRTNNFIVRQLFESCM 560
             +M       D  A + L+  Y K GS+D A +  R M G +G++        L +   
Sbjct: 313 FEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFC 372

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           K      A  L+          D   Y  ++A L R
Sbjct: 373 KLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSR 408



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 190/409 (46%), Gaps = 6/409 (1%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +   L  I   D SL +      +    P  + Y  L   L ++R  D   SLFDEM+  
Sbjct: 86  LIHGLAKIGKLDESLKILSEMVMRGQ-TPSMQAYSSLVRALAKARRVDHASSLFDEMIRG 144

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
                  +F     +I  L +A K++ +   FK++    C+ +   YNVL+    + G  
Sbjct: 145 GHHPDRLMFY---ELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQL 201

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +A  ++  M+   CS D  TY  ++ ++ K+ R++   KLF+ M+   + P+   F++L
Sbjct: 202 EQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTL 261

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +  + + G L+ +++V+  M   G +P+   Y +LI    +A K+  A  L+++M  A  
Sbjct: 262 IHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACI 321

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDME-RAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            P+   +  +I  + K G +D A  ++ +M   AG  PT  T++ L++     G++  A 
Sbjct: 322 PPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRAN 381

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVY 524
           +L   M + GL     TY  L+  L++   +D A ++  +M+   + +D VS    +   
Sbjct: 382 ELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGL 441

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            K G++D A         SG   N    R L ES +K    E A+ L+E
Sbjct: 442 CKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 490



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 157/331 (47%), Gaps = 1/331 (0%)

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
           D +   +  +Y+ ++   + +  P +++++ E M    C+ D   +  ++   A+S  ++
Sbjct: 3   DKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNME 62

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A +++Q M E  ++P    +  L+  + K G+LD S+K+  EM   G  PS   Y SL+
Sbjct: 63  KAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLV 122

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
            + AKA ++D A  L+DEM   G  P+  +F  +I    ++GK+  A   F  M + G  
Sbjct: 123 RALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQ 182

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P    Y+ LL    SSGQ++ A  L+  M S    P + TY  LL  + K + V+   K+
Sbjct: 183 PNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKL 242

Query: 503 LLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
              M+  GY  +V + S ++    + G ++ AL     M  +G + N +    L     +
Sbjct: 243 FEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCR 302

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLA 592
                 A+ L E   ++    D V Y S++A
Sbjct: 303 AEKVIQARELFEKMTQACIPPDAVAYNSLIA 333



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 168/353 (47%), Gaps = 5/353 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +S Y P +  Y +L   L +    D  L +  EMV    +       AY+ +++ LAKA 
Sbjct: 73  ESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVM---RGQTPSMQAYSSLVRALAKAR 129

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           +++ +   F +++      D   +  L+      G    A E ++ M K  C  +   Y 
Sbjct: 130 RVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYN 189

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           +++  L  SG+L+ A  LF EMK  +  P    + +L+D++ KA R++   K++  M+  
Sbjct: 190 VLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAA 249

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G+ P+   + +LI    + G+L+ AL ++  M  AG +PN   +T +I    ++ K+  A
Sbjct: 250 GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQA 309

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT-SAGLRPGLSTYTALLT 488
             +F  M +A   P    Y+ L+  +   G +D A KLY  M+  AGL+P + T+  L+ 
Sbjct: 310 RELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLID 369

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRWLRFM 540
              K   +  A +++ EM T G + D     +L+  +   + +D AL   + M
Sbjct: 370 GFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQM 422



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 163/358 (45%), Gaps = 39/358 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           A+N V+Q  A+++ +E +   ++ +++S  K D  SY++L+      G   ++ +I   M
Sbjct: 47  AFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEM 106

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                +     Y  ++ +LAK+ R+D A  LF EM      P   +F  L+  + +AG++
Sbjct: 107 VMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKV 166

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA---------------------- 394
             + + + +M   G +P+ P+Y  L+     +G+L+ A                      
Sbjct: 167 KDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTL 226

Query: 395 -------------LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
                         +L++ MR AG+ PN   F+ +I    ++G+L+ A+ +F  M  AG 
Sbjct: 227 LDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGC 286

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   TY+ L+     + +V  A +L+  MT A + P    Y +L+    KR  +D A K
Sbjct: 287 KPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEK 346

Query: 502 ILLEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
           +  EM + G  +    V+ + ++  + K G +  A   +  MG+ G+  ++   R L 
Sbjct: 347 LYREM-SGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILI 403



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 160/350 (45%), Gaps = 11/350 (3%)

Query: 156 DKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDG 215
           D+L F   ++ + QA KV + S+     F+   +     P    Y +L   L  S   + 
Sbjct: 149 DRLMFYELILGLCQAGKVKDASER----FKQMPKHGCQ-PNVPVYNVLLHGLCSSGQLEQ 203

Query: 216 MLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
             +LF EM  H  S + ++    YN ++  + KA ++E     F+ +  +    +  +++
Sbjct: 204 ANTLFAEMKSHSCSPDVVT----YNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFS 259

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            L+      G   KA E++ SM +  C  +  TY  +I  L ++ ++  A +LF++M + 
Sbjct: 260 TLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQA 319

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG-CGHRPSAPMYVSLIESYAKAGKLDT 393
              P    + SL+    K G +D + K+Y EM G  G +P+   + +LI+ + K GKL  
Sbjct: 320 CIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGR 379

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  L  EM   G   +   + ++I   +++ KLD A+ ++  M    FL  P +    + 
Sbjct: 380 ANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVG 439

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
               +G +D A  ++ +   +G  P   T+  L   L K   V+ A K++
Sbjct: 440 GLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 489



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 130/312 (41%), Gaps = 36/312 (11%)

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M+++N   +   ++S++ S+ K  + + S KV  EM   G  P    +  +++ +A++  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           ++ A  ++  M  +G++P+   + ++I   AK GKLD ++ I ++M   G  P+   YS 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 451 LLEM--------HASS---------------------------GQVDSAMKLYNSMTSAG 475
           L+          HASS                           G+V  A + +  M   G
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
            +P +  Y  LL  L     ++ A  +  EMK+   S DV   + L+    K   V+   
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGC 240

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           +    M ++G   N      L     +    E A  +  + +E+  K +   YT++++ L
Sbjct: 241 KLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGL 300

Query: 595 VRCQDEQNERHL 606
            R +     R L
Sbjct: 301 CRAEKVIQAREL 312


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 180/365 (49%), Gaps = 5/365 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AY+ V+Q LAKA  L  +   F+ +    C     +YNVL+    N G   KA ++++SM
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 297 EKGE-CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ++ +    D  TY  +I  L  SG  + A KL  EM+++N   +   ++S++ S+ K  +
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            + S KV  EM   G  P    +  +++ +A++  ++ A  ++  M  +G++P+   + +
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 416 IIESHAKSGKLDIAMSIFTD--MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
           +I   AK GKLD ++ I ++  M  AG++P   T+S L+     +G+++ A++++ SM  
Sbjct: 192 LIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE 251

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDH 532
           AG +P   TYT L+  L + + V  A ++  +M       D  A + L+  Y K GS+D 
Sbjct: 252 AGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDE 311

Query: 533 ALRWLRFM-GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           A +  R M G +G++        L +   K      A  L+          D   Y  ++
Sbjct: 312 AEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILI 371

Query: 592 AHLVR 596
           A L R
Sbjct: 372 AGLSR 376



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 189/398 (47%), Gaps = 7/398 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L LF+  KR+    P    Y  L   L  S + +G   L  EM     KN  +    Y+
Sbjct: 64  ALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEM---RDKNIAANVFTYS 120

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I+ L K  K E SY   ++++ + C  D  ++N +M  F       KA E+Y+ M + 
Sbjct: 121 SIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES 180

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER--NFRPSFNIFASLVDSMGKAGRLD 357
               D  +Y ++I  LAK G+LD ++K+  EM  R   + P+   F++L+  + + G L+
Sbjct: 181 GYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELE 240

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +++V+  M   G +P+   Y +LI    +A K+  A  L+++M  A   P+   +  +I
Sbjct: 241 KALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLI 300

Query: 418 ESHAKSGKLDIAMSIFTDME-RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
             + K G +D A  ++ +M   AG  PT  T++ L++     G++  A +L   M + GL
Sbjct: 301 AGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGL 360

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
                TY  L+  L++   +D A ++  +M+   + +D VS    +    K G++D A  
Sbjct: 361 AADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYA 420

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
                  SG   N    R L ES +K    E A+ L+E
Sbjct: 421 VFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 142/301 (47%), Gaps = 4/301 (1%)

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M K +C++ G  Y+ ++ SLAK+G L  A+++F+ MK  +  PS   +  L++S   AG 
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGE 60

Query: 356 LDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
              ++ ++  M+      P    Y +LI     +G  + A +L  EMR      N   ++
Sbjct: 61  FGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYS 120

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            II+S  K  K + +  +  +M  AG  P    ++ +++  A S  ++ A ++Y  M  +
Sbjct: 121 SIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES 180

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLE--MKTMGYSVDV-SASDVLMVYIKDGSVD 531
           G +P   +Y  L+  LAK   +D + KIL E  M+  GY  +V + S ++    + G ++
Sbjct: 181 GYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELE 240

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            AL     M  +G + N +    L     +      A+ L E   ++    D V Y S++
Sbjct: 241 KALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLI 300

Query: 592 A 592
           A
Sbjct: 301 A 301


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 201/450 (44%), Gaps = 15/450 (3%)

Query: 160 FVPKMVHITQALKVINDSDT-SLSLFRWAKRQSW----YVPGDECYVMLFDVLNESRDFD 214
           F+  +   T +   I D    +L+LF    R+       VP    Y +L D    +R  D
Sbjct: 115 FLAALARATSSSACITDGPALALALFNRVCREEAGTQVAVPTFCTYNILMDCCCRARRPD 174

Query: 215 GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSY-CCFKKVLDSDCKIDTQSY 273
             L+LF  ++    K  +   +A N +++ L  A++ E +      ++ +  C  +  SY
Sbjct: 175 LGLALFGCILRTGLK--MDQITA-NTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSY 231

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEK--GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++++    +  +  +A ++ + M K  G CS D   Y  +I      G    A  LF EM
Sbjct: 232 SIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEM 291

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             +  +P    +  ++D++ KA  +D +  V  +M   G +P    Y  +I  YA  G+L
Sbjct: 292 TRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRL 351

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A +++ EM+  G  PN       + S  K G+   A   F  M   G  P   +Y  L
Sbjct: 352 KEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTL 411

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           L  +AS G     + L+NSM S G+      +T L+   AKR +VD A  I  EM+  G 
Sbjct: 412 LHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGV 471

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
           S D V+ S V+  + + G +  A+     M + GI+ N  +   + +  CM   L ++ +
Sbjct: 472 SPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKE 531

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
            + E   +   + D+V ++SV+  L  C+D
Sbjct: 532 LVSEMINKGIPRPDIVFFSSVINSL--CKD 559



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 157/357 (43%), Gaps = 2/357 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AY+ VI       +   +   F ++     K D  +YN+++          KA  +   M
Sbjct: 267 AYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQM 326

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  MI   A  GRL  A K+F+EMK+R   P+     S + S+ K GR 
Sbjct: 327 TTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRS 386

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + + +  M   GH+P    Y +L+  YA  G     + L++ M+  G   N  +FT++
Sbjct: 387 KEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTIL 446

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++AK G +D AM IFT+M++ G  P   TYS ++   +  G++  AM+ +N M + G+
Sbjct: 447 IHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGI 506

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD--VSASDVLMVYIKDGSVDHAL 534
           +P  + Y++++        +  A +++ EM   G      V  S V+    KDG V  A 
Sbjct: 507 QPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAH 566

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                    G R        L +        + A  +L+       + D+V Y ++L
Sbjct: 567 DIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLL 623



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 186/461 (40%), Gaps = 48/461 (10%)

Query: 141 VVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTS--LSLFRWAKRQSWYVPGDE 198
            + R K   ++  ++ K   +P +V     L  +     S   + F  +     + P   
Sbjct: 347 TLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIF 406

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCC 257
            Y  L         F  M+ LF+ M      NGI+     +  +I   AK   ++ +   
Sbjct: 407 SYCTLLHGYASEGCFADMIGLFNSM----KSNGIAANCHVFTILIHAYAKRGMVDDAMLI 462

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           F ++       D  +Y+ +++ F   G    A E +  M       + + Y  +I     
Sbjct: 463 FTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCM 522

Query: 318 SGRLDAAIKLFQEMKERNF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
            G L  A +L  EM  +   RP    F+S+++S+ K GR+  +  ++      G RP   
Sbjct: 523 HGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVI 582

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            + SLI+ Y   GK+D A ++ D M + G  P+   +  +++ + K+G+++  +++F +M
Sbjct: 583 TFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREM 642

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +R G  P   TY  +L     +G+  +A K ++ M  +G    +S Y  +L  L +    
Sbjct: 643 QRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCA 702

Query: 497 DVAAKILLEMKTMG---------------YSVD-----------VSASDVL--------- 521
           D A  +  ++ TM                Y V            +SAS +L         
Sbjct: 703 DEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVM 762

Query: 522 -MVYIKDGSVDHALRWLRFMGSSGI----RTNNFIVRQLFE 557
            +  +KDG V+ A      M  SGI    R  N I+R L E
Sbjct: 763 IINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLE 803



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 128/280 (45%), Gaps = 9/280 (3%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           ++ VI  L K  ++  ++  F    D   +    ++N L+  +   G   KAF+I ++ME
Sbjct: 549 FSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAME 608

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  TY  ++    K+GR++  + LF+EM+ +  +P+   +  ++  + +AGR  
Sbjct: 609 VVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTV 668

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + K + EM   G   +  +Y  ++    +    D A+ L+ ++     + +  +   +I
Sbjct: 669 AARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMI 728

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  K  + + A  +F  +  +G LP  STY  ++      G V+ A  +++SM  +G+ 
Sbjct: 729 NAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIV 788

Query: 478 PGLSTYTALLTLLAKRKLVDVAA---------KILLEMKT 508
           PG      ++ +L ++  +  A          +ILLE  T
Sbjct: 789 PGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEAST 828



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/279 (19%), Positives = 127/279 (45%), Gaps = 11/279 (3%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS----DCKIDTQSYN 274
           +FD       + G+  F   N +I       K++ ++    K+LD+      + D  +YN
Sbjct: 568 IFDLATDIGERPGVITF---NSLIDGYCLVGKMDKAF----KILDAMEVVGVEPDIVTYN 620

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            L+  +   G       ++  M++     +  TY +M+  L ++GR  AA K F EM E 
Sbjct: 621 TLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIES 680

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
               + +I+  ++  + +    D ++ ++ ++     + S  +  ++I +  K  + + A
Sbjct: 681 GTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEA 740

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             L+  +  +G  PN   + ++I +  K G ++ A ++F+ ME++G +P     + ++ M
Sbjct: 741 KELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRM 800

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
               G++  A    + +    +    ST + +L+L +++
Sbjct: 801 LLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRK 839


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 182/403 (45%), Gaps = 4/403 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +    L  +R  D    +F EM  D    G  + + Y  +I  L  A KL+ +
Sbjct: 268 PNIYTYTICIRALGRARRIDDAWGIFKEM--DDEGCGPDVIT-YTVLIDALCAAGKLDKA 324

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              + K+  S    D  +Y  LM  F   G        +  ME    + D  TY ++I +
Sbjct: 325 KELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEA 384

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L KSG +D A  +   M  +   P+ + + +++  + KA RLD ++++   M+  G +P+
Sbjct: 385 LCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPT 444

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           A  YV  I+ Y K+G    A+  ++ M+  G  P+       + + A++G++  A  IF 
Sbjct: 445 AFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFN 504

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           D+ + G  P   TY+ L++ ++ +GQ+D A +L + M S G  P +    +L+  L K  
Sbjct: 505 DLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAG 564

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            VD A K+   +K +  +  V   ++L+  + K+G +  AL     M  SG   N     
Sbjct: 565 RVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFN 624

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            L +   KN   + A  +           D++ Y +++  L+R
Sbjct: 625 SLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIR 667



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 184/385 (47%), Gaps = 13/385 (3%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYV-PGDECYVMLFDVLNESRDFDGMLSLFDEMV 224
            +   LK I+D +++ S F+   + + +V   D C  ML ++L E R  + M+ +FD M 
Sbjct: 100 EVMTILKSISDPNSAFSYFKIVSQLTNFVHTTDACNYML-EILREQRRIEDMVFVFDLM- 157

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
               K      + Y  + + L+    +  +    +K+ +    ++  SYN L+ L L  G
Sbjct: 158 --QKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLL-PG 214

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
              +A ++Y+ M          TY  ++ +L + G     + L +EMK    RP+   + 
Sbjct: 215 FCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYT 274

Query: 345 SLVDSMGKAGRLDTSMKVYMEM--QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
             + ++G+A R+D +  ++ EM  +GCG  P    Y  LI++   AGKLD A  L+ +MR
Sbjct: 275 ICIRALGRARRIDDAWGIFKEMDDEGCG--PDVITYTVLIDALCAAGKLDKAKELYVKMR 332

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
            +   P+   +  +++   K G L+     + +ME  G+ P   TY+ L+E    SG VD
Sbjct: 333 ASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVD 392

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            A  + + MT+ G+ P L TY  ++  L K + +D A ++L  M+++G     + S VL 
Sbjct: 393 RAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVK-PTAFSYVLF 451

Query: 523 V--YIKDGSVDHALRWLRFMGSSGI 545
           +  Y K G    A+     M   GI
Sbjct: 452 IDYYGKSGDPAKAIDTFETMKKRGI 476



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 165/318 (51%), Gaps = 3/318 (0%)

Query: 195  PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
            P  E Y  L D L  S   +  L LF++M   S+    + F+ YN ++    K+ ++   
Sbjct: 794  PTLESYNCLMDGLLGSNFTEKALELFEDM--KSAGTHPNNFT-YNLLLDAHGKSKRINKL 850

Query: 255  YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
            Y  + ++    C+ +  ++N++++  +      KA ++Y  +  G+ S    TY  +I  
Sbjct: 851  YDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDG 910

Query: 315  LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            L K+GR + A+K+F+EM +    P+  I+  L++  GK+G +D + +++ +M   G RP 
Sbjct: 911  LLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPD 970

Query: 375  APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
               Y  L+E     G++D A++ ++E+++ G  P+   +  II    KS +LD A+S+F+
Sbjct: 971  LKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFS 1030

Query: 435  DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            +M+  G  P   TY+ L+     +G+VD A+K+Y  +   GL P + TY AL+   +   
Sbjct: 1031 EMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSG 1090

Query: 495  LVDVAAKILLEMKTMGYS 512
              D A  +  +M  +G S
Sbjct: 1091 NKDQAFSVFKKMMVVGCS 1108



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 144/286 (50%), Gaps = 1/286 (0%)

Query: 271  QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            +SYN LM   L      KA E++E M+      +  TY L++ +  KS R++    L+ E
Sbjct: 797  ESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSE 856

Query: 331  MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
            M+ R   P+      ++ ++ K+  L+ ++ +Y E+      P+   Y  LI+   KAG+
Sbjct: 857  MRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGR 916

Query: 391  LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
             + A+++++EM   G  PN  ++ ++I    KSG++D A  +F  M + G  P   +Y+ 
Sbjct: 917  SEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTI 976

Query: 451  LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            L+E    +G++D A++ +  +   GL P   +Y  ++  L K + +D A  +  EMK  G
Sbjct: 977  LVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRG 1036

Query: 511  YSVDVSASDVLMVYIK-DGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
             S D+   + L++++   G VD A++    +   G+  + F    L
Sbjct: 1037 ISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNAL 1082



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 150/313 (47%), Gaps = 6/313 (1%)

Query: 175  NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGIS 233
            N ++ +L LF   K    + P +  Y +L D   +S+  + +  L+ EM       N I+
Sbjct: 810  NFTEKALELFEDMKSAGTH-PNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAIT 868

Query: 234  LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
                +N +I  L K++ L  +   + +++  D      +Y  L+   L  G   +A +I+
Sbjct: 869  ----HNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIF 924

Query: 294  ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            E M    C  +   Y ++I    KSG +D A +LF++M +   RP    +  LV+ +   
Sbjct: 925  EEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCIT 984

Query: 354  GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
            GR+D +++ + E++  G  P    Y  +I    K+ +LD AL L+ EM+  G  P+   +
Sbjct: 985  GRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTY 1044

Query: 414  TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
              +I     +GK+D+A+ ++ +++  G  P+  TY+ L+  H+ SG  D A  ++  M  
Sbjct: 1045 NALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMV 1104

Query: 474  AGLRPGLSTYTAL 486
             G  P   T+  L
Sbjct: 1105 VGCSPNTETFAQL 1117



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 186/414 (44%), Gaps = 7/414 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y P    Y +L + L +S D D    + D M   ++K        YN +I  L KA +L+
Sbjct: 371 YAPDVVTYTILIEALCKSGDVDRAFDMLDVM---TTKGIFPNLHTYNTMICGLLKARRLD 427

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +    + +     K    SY + +  +   G P KA + +E+M+K       +     +
Sbjct: 428 EALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASL 487

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            +LA++GR+  A  +F ++ +    P    +  L+    KAG++D + ++  EM   G  
Sbjct: 488 YTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCE 547

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P   +  SLI +  KAG++D A +++  ++     P    + +++    K GK+  A+ +
Sbjct: 548 PDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALEL 607

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  M  +G  P   T++ LL+  + +  VD A+K++  MT     P + TY  ++  L +
Sbjct: 608 FGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIR 667

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALR-WLRFMGSSGIRTNNFI 551
              +D A     +MK       V+   ++   ++ G V+ A++  + F+  + ++TN+  
Sbjct: 668 EGRIDYAFWFFHQMKKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQF 727

Query: 552 VRQLFESCMKNALYESAKPLLETYV-ESAAKVDLVL--YTSVLAHLVRCQDEQN 602
             +L E  +  A  E A    E  V  S  + D V+     VL    +  D QN
Sbjct: 728 WGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQN 781



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 118/225 (52%)

Query: 237  AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             Y  +I  L KA + E +   F+++LD  C  ++  YN+L+  F   G    A E+++ M
Sbjct: 903  TYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKM 962

Query: 297  EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
             K     D  +Y +++  L  +GR+D A++ F+E+K     P    +  +++ +GK+ RL
Sbjct: 963  VKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRL 1022

Query: 357  DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            D ++ ++ EM+  G  P    Y +LI     AGK+D A+++++E+++ G  P+   +  +
Sbjct: 1023 DEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNAL 1082

Query: 417  IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
            I  H+ SG  D A S+F  M   G  P   T++ L   +  +G V
Sbjct: 1083 IRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLV 1127



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 50/411 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMSYCCF 258
           YV+  D   +S D    +  F+ M     K GI    +A N  +  LA+  ++  +   F
Sbjct: 448 YVLFIDYYGKSGDPAKAIDTFETM----KKRGIMPSIAACNASLYTLAETGRISEAEDIF 503

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             +       D+ +YN+LM  +   G   KA ++   M    C  D      +I +L K+
Sbjct: 504 NDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKA 563

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR+DAA K+F  +K     P+   +  L+  +GK G++  +++++  M   G  P+   +
Sbjct: 564 GRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITF 623

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SL++  +K   +D AL+++  M +    P+   +  II    + G++D A   F  M++
Sbjct: 624 NSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKK 683

Query: 439 AGFL-PTPSTYSCLLEMHASSGQVDSAMKLY-----------NS----------MTSAGL 476
             FL P   T   L+      G+V+ A+K+            NS          +T A +
Sbjct: 684 --FLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEI 741

Query: 477 RPGLS---------------TYTALLTLLAKRKLVDVAAKILLEM-KTMGYSVDVSASDV 520
              +S                   L+ +L KRK    A  +  +  K +G    + + + 
Sbjct: 742 EEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNC 801

Query: 521 LM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK----NALYE 566
           LM   +     + AL     M S+G   NNF    L ++  K    N LY+
Sbjct: 802 LMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYD 852


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 127/575 (22%), Positives = 238/575 (41%), Gaps = 94/575 (16%)

Query: 111 SVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQA 170
           S +P    H  V   ++PF   + V+++  +++R +W     ++L +L    K  H+ + 
Sbjct: 68  SSKPHISSHFAVPASREPF--QAIVSRVCAILSRVQWKGS--SELKQLSPQLKAHHVAEI 123

Query: 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF---DGMLSLFDEMVHDS 227
           + V  D+++ +  F W  ++ +Y     C++ + + L   R F   D +  L  +   + 
Sbjct: 124 VAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNE 183

Query: 228 SKN---------------GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            +                G SL+S    +IQ LAK + +E +   +K++L+S  +    +
Sbjct: 184 EEIRRVADFLNEISGMGFGFSLYSCNTLLIQ-LAKFEMVEGARNLYKQMLNSGIQPSLLT 242

Query: 273 YNVLMTLFLNKG---------------------LPYK--------------AFEIYESME 297
           +N L+ +   KG                       Y               AF +++ M 
Sbjct: 243 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV 302

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE--------------------------- 330
           K  C  +  TY  +I  L   GR+D A+ + +E                           
Sbjct: 303 KEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 362

Query: 331 --------MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
                   MK+R  RP+   + +L+  + + G+L+ ++ +Y +M   G  P+   Y +LI
Sbjct: 363 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 422

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
                 G+  TAL+++  M   G   N   +  II+     G ++ AM +F  M + G L
Sbjct: 423 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 482

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           PT  TY+ L+  + + G V++A +L + M   G  P   TY  L++  +K   ++ A+  
Sbjct: 483 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 542

Query: 503 LLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             EM   G + + VS + ++  + KDG VD AL  L  M   G   N      +     K
Sbjct: 543 FQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSK 602

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +  A+ + +   E     +++ YT+++  L R
Sbjct: 603 ENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCR 637



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 144/320 (45%), Gaps = 16/320 (5%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLE 252
           VP    Y  L + L     F   L +F  M  H S  N       YN +I+ L     +E
Sbjct: 412 VPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANT----QTYNEIIKGLCLGGDIE 467

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F+K+L         +YN L+  +L KG    A  + + M++  C  D  TY  ++
Sbjct: 468 KAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELV 527

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
              +K G+L++A   FQEM E    P+   + +L+D   K G++D ++ +   M+  G  
Sbjct: 528 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCN 587

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y ++I   +K  +   A ++ D+M   G  PN   +T +I+   ++G+   A  I
Sbjct: 588 PNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 647

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL----- 487
           F DME+   LP   TYS L+      G+ D A  L   M   GL P   T+T+L+     
Sbjct: 648 FHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVV 707

Query: 488 ------TLLAKRKLVDVAAK 501
                   L  R++VDV  K
Sbjct: 708 LGRIDHAFLLLRRMVDVGCK 727



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 173/382 (45%), Gaps = 7/382 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  L++  KLE++   + K+L      +T +YN L+      G    A +I+  M
Sbjct: 382 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWM 441

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      +  TY  +I  L   G ++ A+ LF++M +    P+   + +L++     G +
Sbjct: 442 EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNV 501

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + ++   M+  G  P    Y  L+  ++K GKL++A   + EM   G  PN   +T +
Sbjct: 502 NNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTL 561

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ H+K GK+DIA+S+   ME  G  P   +Y+ ++   +   +   A K+ + M   GL
Sbjct: 562 IDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGL 621

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
            P + TYT L+  L +      A KI  +M+      ++ + S ++    ++G  D A  
Sbjct: 622 LPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEI 681

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L+ M   G+  +      L +  +     + A  LL   V+   K +   Y+ +L  L 
Sbjct: 682 LLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGL- 740

Query: 596 RCQDEQNERHLMAILSATKHKA 617
                Q E  L+    A +H+A
Sbjct: 741 -----QKECLLLEEKVAVQHEA 757



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 164/402 (40%), Gaps = 4/402 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L + L      D  L + +EM+    +  +     Y   I  L   +  E +
Sbjct: 308 PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVY---TYTLPITALCAIEHEEEA 364

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                ++    C+ + Q+Y  L++     G    A  +Y  M K     +  TY  +I  
Sbjct: 365 IELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINE 424

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L   GR   A+K+F  M+      +   +  ++  +   G ++ +M ++ +M   G  P+
Sbjct: 425 LCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPT 484

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +LI  Y   G ++ A RL D M+  G  P+   +  ++   +K GKL+ A   F 
Sbjct: 485 VVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQ 544

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M   G  P P +Y+ L++ H+  G+VD A+ L   M   G  P + +Y A++  L+K  
Sbjct: 545 EMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKEN 604

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
               A KI  +M   G   +V     L+  + ++G    A +    M       N +   
Sbjct: 605 RFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYS 664

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L     +    + A+ LL+         D V +TS++   V
Sbjct: 665 SLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFV 706



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 153/379 (40%), Gaps = 28/379 (7%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L D  ++    D  LSL + M        +    +YN VI  L+K ++   +
Sbjct: 553 PNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVE---SYNAVINGLSKENRFSEA 609

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                K+ +     +  +Y  L+      G    AF+I+  MEK +C  +  TY  +I  
Sbjct: 610 EKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 669

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L + G+ D A  L +EM+ +   P    F SL+D     GR+D +  +   M   G +P+
Sbjct: 670 LCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPN 729

Query: 375 APMYVSLIESYAKAGKL------------------------DTALRLWDEMRIAGFRPNF 410
              Y  L++   K   L                        +    L   M   G  P  
Sbjct: 730 YRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTL 789

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             ++ ++    + G+   A  +  DM+  GF P    Y  LL  H  + +VD A+K+++S
Sbjct: 790 DTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHS 849

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS 529
           + + G +  LS Y AL+  L K   V+ A  +   M    ++ D     VL+   +K+G 
Sbjct: 850 IEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGE 909

Query: 530 VDHALRWLRFMGSSGIRTN 548
           +D  ++ L  M S     N
Sbjct: 910 LDLCMKLLHIMESKNFTPN 928



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 112/226 (49%), Gaps = 24/226 (10%)

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLM------TLFLNKGL-----------PYKA--- 289
           +++ ++   ++++D  CK + ++Y+VL+       L L + +           P++    
Sbjct: 710 RIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVN 769

Query: 290 FEIYES----MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           FEI  +    M +  C     TY  ++  L + GR   A +L ++MKER F P   I+ S
Sbjct: 770 FEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYS 829

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+ +  K   +D ++K++  ++  G +    +Y +LI +  KAG+++ A  L+D M    
Sbjct: 830 LLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE 889

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           +  +  ++T++++   K G+LD+ M +   ME   F P   TY  L
Sbjct: 890 WNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 935



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 82/161 (50%), Gaps = 2/161 (1%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAA 324
           C+    +Y+ L++    KG  Y+A ++ + M E+G C  D   Y  ++ +  K+  +D A
Sbjct: 785 CEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCP-DREIYYSLLIAHCKNLEVDHA 843

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
           +K+F  ++ + F+   +I+ +L+ ++ KAG+++ +  ++  M          ++  L++ 
Sbjct: 844 LKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDG 903

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
             K G+LD  ++L   M    F PN   + ++    ++ GK
Sbjct: 904 LLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGK 944



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A +I+ S+E     L  S Y  +I +L K+G+++ A  LF  M E+ +     ++  LVD
Sbjct: 843 ALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVD 902

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            + K G LD  MK+   M+     P+   YV L    ++ GK   +  L D++++
Sbjct: 903 GLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLKV 957


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 155/692 (22%), Positives = 270/692 (39%), Gaps = 99/692 (14%)

Query: 142 VNRWKWGPELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSLS 182
           V + K+  ++E+ ++KL  +P    I + L +                     D   SL 
Sbjct: 67  VEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLR 126

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
           LF++ +RQ W  P +  Y ++  +L      D  L +FDEM   S     S+FS Y  +I
Sbjct: 127 LFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEM--PSQGVSRSVFS-YTALI 183

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF-EIYESMEKGEC 301
               +  + E S     ++ +        +YN ++      GL ++    ++  M     
Sbjct: 184 NAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGI 243

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
             D  TY  ++ + A  G  D A  +F+ M +    P    ++ LV++ GK  RL+    
Sbjct: 244 QPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCD 303

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           +  EM   G  P    Y  L+E+YAK+G +  A+ ++ +M+ AG  PN   +++++    
Sbjct: 304 LLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFG 363

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           +SG+ D    +F +M+ +   P  +TY+ L+E+    G     + L++ M    + P + 
Sbjct: 364 QSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDME 423

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFM 540
           TY  ++    K  L + A KIL  M          A + V+  + +    + AL     M
Sbjct: 424 TYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTM 483

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES------------------AAKV 582
              G   +      L  S  +  L + ++ +L   V+S                    K 
Sbjct: 484 HEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543

Query: 583 DLVLYTSVLAHLVRCQDEQNERHLMAILSA--------------TKHKAHAFL------C 622
           +  + T V     RC  + +ER L A+LS                + KA   L      C
Sbjct: 544 EEAVKTYVDMEKSRC--DPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYC 601

Query: 623 GLFT--GPEQRKQPVLSFVREFFHG-------------------------IDYELEE--- 652
            +    G  +R   V   + E                             ++Y L++   
Sbjct: 602 MMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNS 661

Query: 653 ---GAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSV 709
              G    F N LL+ L  +GQ  RA  V   A +  LFP+ +     + WS+DV  +S 
Sbjct: 662 EGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPE-LFRKNKLVWSVDVHRMSE 720

Query: 710 GAALIAVMHTLHRFRKRMLYYGVVPRRIKLVT 741
           G    A+   L+     ML  G +P+   +V+
Sbjct: 721 GGMYTALSVWLNDIND-MLLKGDLPQLAVVVS 751


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 187/417 (44%), Gaps = 4/417 (0%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           +   S+  ++W K Q  + P    YV     L   + +  +  L DEM+    KN     
Sbjct: 3   NRQVSVEFYKWVKSQDGFEPHFHLYVAFAHCLMRVQKWVALEILVDEMI---GKNCPPDI 59

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
             Y  VI+      + + +   F K+    C  D   YN+L+  +  +G   +A + +  
Sbjct: 60  KFYALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQ 119

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ++      D  TY  ++ +  K G +D   +  +EM+E   +P    ++ L+D  GKAGR
Sbjct: 120 LKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGR 179

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            + +   + E+Q  G+ P +  Y +LI ++AK G +D A  ++ E + +    +  +F  
Sbjct: 180 HEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYT 239

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+ +AK+   D A+ +   M+  G  P    Y  +L     + Q   A+KL+  M  + 
Sbjct: 240 MIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESN 299

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
            R G STY  +L + +K      A ++L +M+ +G+  +V A   L+ +Y K G +  A 
Sbjct: 300 CRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEAT 359

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           R    M   G + N  +   + +   K      A+ L+    +S    D V YT+++
Sbjct: 360 RLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLI 416



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 164/337 (48%), Gaps = 1/337 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AY+ +I    KA + E +   F+++  S    D+ +YN L+  F   G+  +A  +++  
Sbjct: 166 AYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEA 225

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++  C  D   +  MI   AK+   D A+ + + MKE   +P+   + S++++  +A + 
Sbjct: 226 QRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQP 285

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++K++ EMQ    R     Y++++  Y+KAG    A  L  +MR  GFR N   ++ +
Sbjct: 286 MGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTL 345

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ + K GKL  A  +F+ M++ G       Y+ +L+M+  +G+++ A +L   +  + L
Sbjct: 346 IDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKL 405

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P   TYT L+    +    +   ++  + +  G  +D +  + ++ VY K         
Sbjct: 406 VPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYGKARQYSKLAE 465

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
            L  M  SGI+ +  I++ + E      + E+A  LL
Sbjct: 466 LLEVMPKSGIQPDTRILKTVVEIYEDGGMCENAAELL 502



 Score = 99.4 bits (246), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 133/270 (49%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +IQ  AKA   + +    K + +   + +   Y  ++  F+    P  A +++E M++  
Sbjct: 240 MIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESN 299

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           C    STY  M+   +K+G   AA +L  +M++  FR +   +++L+D  GK G+L  + 
Sbjct: 300 CRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEAT 359

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +++  M+  G + +  +Y ++++ Y KAG+++ A RL  E++ +   P+   +T +I ++
Sbjct: 360 RLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAY 419

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            + G+ +  + +F      G        + ++ ++  + Q     +L   M  +G++P  
Sbjct: 420 NRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDT 479

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMG 510
                ++ +     + + AA++L ++  +G
Sbjct: 480 RILKTVVEIYEDGGMCENAAELLRKINELG 509


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 180/384 (46%), Gaps = 8/384 (2%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           +  + +AL++    + +L+L RWA ++           M+   L      D + +L DE 
Sbjct: 107 ITSLLKALELSGHWEWALALLRWAGKEG--AADASALEMVVRALGREGQHDAVCALLDET 164

Query: 224 -VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
            +   S+  +    AY  V+  L++A + E +   F ++          +YNV++ ++  
Sbjct: 165 PLPPGSRLDVR---AYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGR 221

Query: 283 KGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
            G  + +   + + M       DG T   +I +  + G +D A+  F+++K R   P   
Sbjct: 222 MGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVV 281

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            + +L+   GKAG    +++V  EM+  G +P A  Y  L  +YA+AG  + A R  D M
Sbjct: 282 TYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTM 341

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G  PN   +  ++ ++   GK+D A+++F  M++ GF+P  +TY+ +L M     + 
Sbjct: 342 ASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRF 401

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
              +++   M+ +G  P   T+  +L +  KR + D   ++L  M++ G  +     + L
Sbjct: 402 TVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTL 461

Query: 522 M-VYIKDGSVDHALRWLRFMGSSG 544
           +  Y + GS  +A +    M S+G
Sbjct: 462 IAAYGRCGSRTNAFKMYNEMTSAG 485



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 118/565 (20%), Positives = 216/565 (38%), Gaps = 77/565 (13%)

Query: 83  GEKCNEWTEEIEYLDESGSVIYTGKGIRSVEP-GFDDHVMVGGIKKPFLNASAVAKIVEV 141
           G     W   +  LDE  +          VEP GF    ++    +  L   AVA   ++
Sbjct: 220 GRMGRSWPRIVALLDEMRAA--------GVEPDGFTASTVIAACCRDGLVDEAVAFFEDL 271

Query: 142 VNRWKWGPELETQLDKLQFVPKMVHITQALKVIN---------DSDTSLSLFRWAKRQSW 192
             R    P + T    LQ   K  + T+AL+V+          D+ T   L     R  +
Sbjct: 272 KARGH-APCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGF 330

Query: 193 YVPGDEC---------------YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG-ISLFS 236
           +     C               Y  +          D  L+LFD+M     K G +   +
Sbjct: 331 FEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQM----KKTGFVPNVN 386

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN V+  L K  +  +      ++  S C  +  ++N ++ +   +G+      + E M
Sbjct: 387 TYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGM 446

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                 L   TY  +I +  + G    A K++ EM    F P    + +L++ + + G  
Sbjct: 447 RSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDW 506

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG--------------------------- 389
            T+  +  +M+  G +P+   Y  L++ YAK G                           
Sbjct: 507 STAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRT 566

Query: 390 ---------KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
                    +LD     + E++  G+ P+  +F  ++  +AK+G    A  +F  ++R+G
Sbjct: 567 LVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSG 626

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-TSAGLRPGLSTYTALLTLLAKRKLVDVA 499
             P   TY+ L++M+A   +   A K+ N +  S  ++P + +Y  ++    K+ LV  A
Sbjct: 627 LSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEA 686

Query: 500 AKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            ++L EM   G +   V+   ++  Y        A   + +M   G++      R++ ES
Sbjct: 687 QRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVES 746

Query: 559 CMKNALYESAKPLLETYVESAAKVD 583
             +   +E A+  L    E+    D
Sbjct: 747 YCRAKRFEEARGFLSEVSETDLDFD 771



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 132/312 (42%), Gaps = 10/312 (3%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           +++EM   +S       + YN ++  L++      +     K+     K + QSY++L+ 
Sbjct: 477 MYNEM---TSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQ 533

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA--KSGRLDAAIKLFQEMKERNF 336
            +  KG         E+   G  ++  S   L    +A  K  RLD     FQE+K R +
Sbjct: 534 CYA-KGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGY 592

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P   IF S++    K G    + +V+  ++  G  P    Y SL++ YAK  +   A +
Sbjct: 593 NPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEK 652

Query: 397 LWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           + ++++ +   +P+   +  +I    K G +  A  + ++M   G  P   TY  L+  +
Sbjct: 653 ILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGY 712

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           +S      A ++   M   GL+P   TY  ++    + K  + A   L E+       D 
Sbjct: 713 SSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVSETDLDFDK 772

Query: 516 SASDVLMVYIKD 527
            A   L  YI+D
Sbjct: 773 KA---LEAYIED 781


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 193/437 (44%), Gaps = 16/437 (3%)

Query: 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM------- 223
           +++  D+  +L  F WAK +  +    E Y +L  +L  +R +    ++  E+       
Sbjct: 106 VELCQDARLALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAVLKELICLRRVL 165

Query: 224 ----VHD---SSKN-GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
               V D   +++N  +  F  ++ +   L +   LE +  CF K+         +S N 
Sbjct: 166 PSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNA 225

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+      G    + + ++ M          TY +MI  L K G L+ A  LF +MKE  
Sbjct: 226 LLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAG 285

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
           F P    + SL+D  GK G LD  + ++ +M+     P    Y +LI  + K  ++  A 
Sbjct: 286 FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAF 345

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
               EM+  G +PN   ++  I++  K G L  A+  F DM R    P   TY+ L++ +
Sbjct: 346 EFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDAN 405

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             +G +  A+KL   +  AG++  + TYTALL  L +   +  A ++   M   G + + 
Sbjct: 406 CKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQ 465

Query: 516 SASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
                L+  +IK   +++A   L+ M    I+ +  +   +       +  E AK L+  
Sbjct: 466 ETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGE 525

Query: 575 YVESAAKVDLVLYTSVL 591
             ES    + V+YT+++
Sbjct: 526 IKESGINTNAVIYTTLM 542



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 172/374 (45%), Gaps = 4/374 (1%)

Query: 226 DSSKNGI--SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           D    GI  S+F+ YN +I YL K   LEM+   F ++ ++    D  +YN L+      
Sbjct: 245 DMGAAGIKRSVFT-YNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKL 303

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           GL  +   I+E M+  +C  D  TY  +I    K  R+  A +   EMK    +P+   +
Sbjct: 304 GLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTY 363

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
           ++ +D+  K G L  ++K +++M+     P+   Y SLI++  KAG L  AL+L +E+  
Sbjct: 364 STFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQ 423

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
           AG + N   +T +++   + G++  A  +F  M  AG  P   TY+ L+     + +++ 
Sbjct: 424 AGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEY 483

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM- 522
           A  +   M    ++P L  Y  +L  L     ++ A  ++ E+K  G + +      LM 
Sbjct: 484 AKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMD 543

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            Y K G    AL  L  M   G+         L +   K+ L + A        E   + 
Sbjct: 544 AYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQP 603

Query: 583 DLVLYTSVLAHLVR 596
           ++ +YT+++  L +
Sbjct: 604 NVAVYTALVDGLCK 617



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 180/444 (40%), Gaps = 39/444 (8%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D L +  D +   SLF +M        I     YN +I    K   L+   C F+
Sbjct: 258 YNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIV---TYNSLIDGHGKLGLLDECICIFE 314

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++ D+DC  D  +YN L+  F       KAFE    M+      +  TY   I +  K G
Sbjct: 315 QMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEG 374

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK------------------ 361
            L  AIK F +M+     P+   + SL+D+  KAG L  ++K                  
Sbjct: 375 MLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYT 434

Query: 362 -----------------VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
                            V+  M   G  P+   Y +L+  + KA +++ A  +  EM+  
Sbjct: 435 ALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK 494

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
             +P+  L+  I+       +L+ A  +  +++ +G       Y+ L++ +  SGQ   A
Sbjct: 495 CIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEA 554

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
           + L   M   GL     TY AL+  L K  LV  A      M  +G   +V+    L+  
Sbjct: 555 LTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDG 614

Query: 525 I-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           + K+   + A +    M   G+  +      L +  MK+   + A  L +  +E   ++D
Sbjct: 615 LCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELD 674

Query: 584 LVLYTSVLAHLVRCQDEQNERHLM 607
           L  YT+++  L      Q  R+L+
Sbjct: 675 LHAYTALIWGLSHSGQVQKARNLL 698



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 127/290 (43%), Gaps = 3/290 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P  E Y  L     ++++ +    +  EM     K  + L   Y  ++  L    +LE +
Sbjct: 463 PNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLL---YGTILWGLCNESRLEEA 519

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                ++ +S    +   Y  LM  +   G   +A  + E M          TY  +I  
Sbjct: 520 KLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDG 579

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L KSG +  A+  F  M E   +P+  ++ +LVD + K    + + K++ EM   G  P 
Sbjct: 580 LCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPD 639

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +LI+   K G L  AL L D M   G   +   +T +I   + SG++  A ++  
Sbjct: 640 KIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLD 699

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           +M   G LP    Y CL++ + + G+VD A++L N M   G+  GLS + 
Sbjct: 700 EMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLSDHA 749



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 152/350 (43%), Gaps = 42/350 (12%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I    KA  L  +    +++L +  K++  +Y  L+     +G   +A E++ +M 
Sbjct: 398 YTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAML 457

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + +  TY  ++    K+  ++ A  + +EMKE+  +P   ++ +++  +    RL+
Sbjct: 458 NAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLE 517

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM---------------- 401
            +  +  E++  G   +A +Y +L+++Y K+G+   AL L +EM                
Sbjct: 518 EAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALI 577

Query: 402 -----------------RIA--GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
                            R++  G +PN  ++T +++   K+   ++A  +F +M   G +
Sbjct: 578 DGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMM 637

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P    Y+ L++ +   G +  A+ L + M   G+   L  YTAL+  L+    V  A  +
Sbjct: 638 PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNL 697

Query: 503 LLEMKTMGYSVDVSASDVLMVYIKD----GSVDHALRWLRFMGSSGIRTN 548
           L EM   G   D     V M  IK     G VD AL     M   G+ T 
Sbjct: 698 LDEMIGKGVLPD---EVVYMCLIKKYYALGKVDEALELQNEMAKRGMITG 744



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 124/279 (44%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++    KA ++E +    K++ +   K D   Y  ++    N+    +A  +   ++
Sbjct: 468 YTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIK 527

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +   + +   Y  ++ +  KSG+   A+ L +EM +     +   + +L+D + K+G + 
Sbjct: 528 ESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQ 587

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +M  +  M   G +P+  +Y +L++   K    + A +L+DEM   G  P+   +T +I
Sbjct: 588 EAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALI 647

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           + + K G L  A+++   M   G       Y+ L+   + SGQV  A  L + M   G+ 
Sbjct: 648 DGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVL 707

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           P    Y  L+        VD A ++  EM   G    +S
Sbjct: 708 PDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLS 746


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 185/381 (48%), Gaps = 3/381 (0%)

Query: 214 DGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           +G +S+   ++++  K+G      AY  +I       +   +   FKK+ +  CK    +
Sbjct: 11  EGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLIT 70

Query: 273 YNVLMTLFLNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           YNV++ ++   G+P+ K   ++E M+      D  TY  +I    +    + A  +F++M
Sbjct: 71  YNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDM 130

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           K   F P    + +L+D  GK+ R+  +++V  EM+  G  PS   Y SLI +YA+ G L
Sbjct: 131 KSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLL 190

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A+ L ++M   G + +   +T ++    ++GK + AM +F +M  AG  P   T++ L
Sbjct: 191 EEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNAL 250

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++MH + G+    MK++  +      P + T+  LL +  +  +    + +  EMK +G+
Sbjct: 251 IKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGF 310

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             +    + L+  Y + GS D A+   + M  +GI  +      +  +  +  L+E ++ 
Sbjct: 311 VPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEK 370

Query: 571 LLETYVESAAKVDLVLYTSVL 591
           +L    +   K + + + S+L
Sbjct: 371 ILAEMQDGMCKPNELTHCSLL 391



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 180/418 (43%), Gaps = 6/418 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKL 251
           +VP    Y  L DV  +SR     + +  EM      NG S     YN +I   A+   L
Sbjct: 135 FVPDKVTYNTLLDVYGKSRRIKEAIEVLREM----EVNGCSPSIVTYNSLISAYARDGLL 190

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E +     ++++   K+D  +Y  +++ F+  G    A  ++E M    C  +  T+  +
Sbjct: 191 EEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNAL 250

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I      G+    +K+F+E+K     P    + +L+   G+ G       V+ EM+  G 
Sbjct: 251 IKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGF 310

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P    Y +LI +Y++ G  D A+ ++  M   G  P+   +  ++ + A+ G  + +  
Sbjct: 311 VPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEK 370

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           I  +M+     P   T+  LL  +A+  ++   + L   + S  + P       L+ + +
Sbjct: 371 ILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNS 430

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           K  L+  A +  LE+K  G+S D+S  + ++ +Y +   V      L FM  SG   +  
Sbjct: 431 KCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLA 490

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
               L     ++  +E ++ +L+  +    K D++ Y +V+    R    +   H+ +
Sbjct: 491 TYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFS 548



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 121/241 (50%), Gaps = 2/241 (0%)

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           ++I  L K G++  A  L   + +  F P    + SL+ +    GR   ++ V+ +M+  
Sbjct: 3   VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 370 GHRPSAPMYVSLIESYAKAG-KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           G +P+   Y  ++  Y K G   +    L++ M+ AG  P+   +  +I    +    + 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEE 122

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A ++F DM+  GF+P   TY+ LL+++  S ++  A+++   M   G  P + TY +L++
Sbjct: 123 AAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLIS 182

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
             A+  L++ A ++  +M   G  +DV + + +L  +++ G  + A+R    M ++G + 
Sbjct: 183 AYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKP 242

Query: 548 N 548
           N
Sbjct: 243 N 243



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 3/227 (1%)

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           +I    K GK+  A  L + +   GF P+   +T +I +   +G+   A+ +F  ME  G
Sbjct: 4   IINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63

Query: 441 FLPTPSTYSCLLEMHASSGQV-DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
             PT  TY+ +L ++   G   +    L+  M +AG+ P   TY  L+T   +  L + A
Sbjct: 64  CKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEA 123

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
           A +  +MK+MG+  D V+ + +L VY K   +  A+  LR M  +G   +      L  +
Sbjct: 124 AAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISA 183

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC-QDEQNER 604
             ++ L E A  L    VE   K+D+  YT++L+  VR  +DE   R
Sbjct: 184 YARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMR 230



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/383 (19%), Positives = 160/383 (41%), Gaps = 40/383 (10%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           ML   +   +D   M  +F+EM     K  I  F+A   +I+      K       F+++
Sbjct: 215 MLSGFVRTGKDESAM-RVFEEMRTAGCKPNICTFNA---LIKMHGNRGKFAEMMKVFEEI 270

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
               C  D  ++N L+ +F   G+  +   +++ M++     +  TY  +I + ++ G  
Sbjct: 271 KICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSF 330

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           D A+ +++ M +    P  + + +++ ++ + G  + S K+  EMQ    +P+   + SL
Sbjct: 331 DQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSL 390

Query: 382 IESYAKAGKLDTALRLWDE-----------------------------------MRIAGF 406
           + +YA   ++   L L +E                                   ++  GF
Sbjct: 391 LHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGF 450

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P+      +I  + +   +     I   M+ +GF P+ +TY+ L+ MH+ S   + + +
Sbjct: 451 SPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEE 510

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YI 525
           +   + + G++P + +Y  ++    +   +  A+ I  EM+  G   DV   +  +  Y 
Sbjct: 511 VLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYA 570

Query: 526 KDGSVDHALRWLRFMGSSGIRTN 548
            D   + A+  + +M   G + N
Sbjct: 571 ADSMFEEAIDVVCYMIKHGCKPN 593



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 122/249 (48%), Gaps = 1/249 (0%)

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           V++ +   +G    A  +  ++ K     D   Y  +I +   +GR   A+ +F++M+E 
Sbjct: 3   VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 335 NFRPSFNIFASLVDSMGKAGR-LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
             +P+   +  +++  GK G   +    ++  M+  G  P    Y +LI    +    + 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEE 122

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  ++++M+  GF P+   +  +++ + KS ++  A+ +  +ME  G  P+  TY+ L+ 
Sbjct: 123 AAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLIS 182

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +A  G ++ AM+L N M   G++  + TYTA+L+   +    + A ++  EM+T G   
Sbjct: 183 AYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKP 242

Query: 514 DVSASDVLM 522
           ++   + L+
Sbjct: 243 NICTFNALI 251



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 154/347 (44%), Gaps = 9/347 (2%)

Query: 161 VPKMVHITQALKVI--NDSDTSLS-LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGML 217
           VP +V     L V   N  D+ +S +F+  KR   +VP  + Y  L    +    FD  +
Sbjct: 276 VPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVG-FVPERDTYNTLISAYSRCGSFDQAM 334

Query: 218 SLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +++  M+      GI+   S YN V+  LA+    E S     ++ D  CK +  ++  L
Sbjct: 335 AMYKRMLD----TGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSL 390

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  + N     +   + E +  G         + ++   +K   L  A + F E+K + F
Sbjct: 391 LHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGF 450

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P  +   +++   G+   +  + ++   M+  G  PS   Y SL+  ++++   + +  
Sbjct: 451 SPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEE 510

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +  E+   G +P+   +  +I ++ ++G++  A  IF++M  +G +P   TY+  +  +A
Sbjct: 511 VLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYA 570

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
           +    + A+ +   M   G +P  +TY +++    K    D A K +
Sbjct: 571 ADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFI 617



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 2/250 (0%)

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
           A +++ +GK G++  +  +   +   G  P    Y SLI +    G+   A+ ++ +M  
Sbjct: 2   AVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 404 AGFRPNFGLFTMIIESHAKSG-KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
            G +P    + +I+  + K G   +    +F  M+ AG LP   TY+ L+         +
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYE 121

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVL 521
            A  ++  M S G  P   TY  LL +  K + +  A ++L EM+  G S   V+ + ++
Sbjct: 122 EAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLI 181

Query: 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             Y +DG ++ A+     M   GI+ + F    +    ++    ESA  + E    +  K
Sbjct: 182 SAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCK 241

Query: 582 VDLVLYTSVL 591
            ++  + +++
Sbjct: 242 PNICTFNALI 251



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/168 (17%), Positives = 78/168 (46%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  + N ++ ++  + +  K  EI   M++   +   +TY  ++   ++S   + + ++ 
Sbjct: 453 DLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVL 512

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+  +  +P    + +++ +  + GR+  +  ++ EM+  G  P    Y + + SYA  
Sbjct: 513 KEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAAD 572

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
              + A+ +   M   G +PN   +  +I+ + K  + D A+   + +
Sbjct: 573 SMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSL 620


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 167/756 (22%), Positives = 294/756 (38%), Gaps = 111/756 (14%)

Query: 87  NEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAV-AKIVEVV--- 142
           N  + ++ +L ++ S I    G R    G     + GG +KP   A  + AK  ++V   
Sbjct: 7   NPNSHQLSFLIQNSSFI----GNRRFADGNRLRFLSGGNRKPSSVAGKIKAKTKDLVLGN 62

Query: 143 -----NRWKWGPELETQLDKLQFVPKMVHITQALKVI-------------------NDSD 178
                 + K+  ++E+ ++KL  +P    I + L +                     D  
Sbjct: 63  PSVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQ 122

Query: 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY 238
            SL LF++ +RQ W  P +  Y ++  +L      D  L +FDEM   S     S+FS Y
Sbjct: 123 RSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEM--PSQGVSRSVFS-Y 179

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF-EIYESME 297
             +I    +  + E S     ++ +        +YN ++      GL ++    ++  M 
Sbjct: 180 TALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMR 239

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  TY  ++ + A  G  D A  +F+ M +    P    ++ LV++ GK  RL+
Sbjct: 240 HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLE 299

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
               +  EM   G  P    Y  L+E+YAK+G +  A+ ++ +M+ AG  PN   +++++
Sbjct: 300 KVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLL 359

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               +SG+ D    +F +M+ +   P  +TY+ L+E+    G     + L++ M    + 
Sbjct: 360 NLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIE 419

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRW 536
           P + TY  ++    K  L + A KIL  M          A + V+  + +    + AL  
Sbjct: 420 PDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVA 479

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES------------------ 578
              M   G   +      L  S  +  L + ++ +L   V+S                  
Sbjct: 480 FNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQ 539

Query: 579 AAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA--------------TKHKAHAFL--- 621
             K +  + T V     RC  + +ER L A+LS                + KA   L   
Sbjct: 540 GGKFEEAVKTYVDMEKSRC--DPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSI 597

Query: 622 ---CGLFT--GPEQRKQPVLSFVREFFHG-------------------------IDYELE 651
              C +    G  +R   V   + E                             ++Y L+
Sbjct: 598 MCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLD 657

Query: 652 E------GAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVR 705
           +      G    F N LL+ L  +GQ  RA  V   A +  LFP+ +     + WS+DV 
Sbjct: 658 KLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPE-LFRKNKLVWSVDVH 716

Query: 706 NLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVT 741
            +S G    A+   L+     +L    +P+   +V+
Sbjct: 717 RMSEGGMYTALSVWLNDMNDMLLNGEDLPQLAVVVS 752


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 175/396 (44%), Gaps = 3/396 (0%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFK 259
           ++L  + +E+R     L L   M+ D ++ G      +Y  VI  L +  +L+ +YC F 
Sbjct: 172 ILLKGLCDENRSQQA-LHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFD 230

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++LD     +  +YN L+  + + G P +A  I+  M +     D  TY  ++  L K+G
Sbjct: 231 EMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNG 290

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R   A K+F  M ++  +P  +I+ +L+      G L    ++   M   G +P   ++ 
Sbjct: 291 RSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFN 350

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            LI +YAK G +D A+  + +MR  G  PN   +  ++++  + GK+D AMS F  +   
Sbjct: 351 ILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISE 410

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P    +  L+    +  + D A +L   M   G+ P    +  LL  L K  +V  A
Sbjct: 411 GLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRA 470

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             I   M  +    DV     L+  Y  DG VD A + L  M   G++ N      +   
Sbjct: 471 KNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIING 530

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             KN   E A  L            +V+Y+++L  L
Sbjct: 531 YCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGL 566



 Score =  105 bits (263), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/415 (19%), Positives = 176/415 (42%), Gaps = 39/415 (9%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + +F +M  D  +  +     YN ++ YL K  +   +   F  ++    K D+  Y  L
Sbjct: 261 IGIFRKMCRDGVEPDVV---TYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTL 317

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  +  +G   +  ++ + M +     D   + ++I + AK G +D A+  F +M+++  
Sbjct: 318 LHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGL 377

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   + +++D++ + G++D +M  +  +   G  P+  ++ +LI       K D A  
Sbjct: 378 HPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEE 437

Query: 397 LWDEMRIAGFRPN-----------------------FGL------------FTMIIESHA 421
           L  EM   G  PN                       F L            +T +I+ + 
Sbjct: 438 LAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYC 497

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
             GK+D A  +   M   G  P   TY+ ++  +  +G+++ A  L+  M S G+ PG+ 
Sbjct: 498 LDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIV 557

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFM 540
            Y+ +L  L + + +  A ++ L M   G  + +   ++++  + ++   D ALR    +
Sbjct: 558 IYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNL 617

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
                   N     + ++ +K   ++ AK L  + +      ++V Y  ++  L+
Sbjct: 618 CLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLI 672



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 132/295 (44%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N ++ +L K   +  +   F  ++  D + D  +Y  L+  +   G   +A ++ E M 
Sbjct: 454 FNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMV 513

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +  TY  +I    K+GR++ A  LF++M  +   P   I+++++  + +  R+ 
Sbjct: 514 LDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIA 573

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + ++Y+ M  CG +     Y  +++   +    D ALR++  + +  F      F ++I
Sbjct: 574 AAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMI 633

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           ++  K G+ D A  +F  +   G +P   TY  +++     G ++    L+ S+   G  
Sbjct: 634 DALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCT 693

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDH 532
                  AL+  L ++  V  A   L ++    +S++ S ++ L+  +  G  D 
Sbjct: 694 ADSRMLNALVGKLPQKGEVRKAGVYLSKIDENNFSLEASTAESLVFLVSSGKYDQ 748



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 58/309 (18%), Positives = 113/309 (36%), Gaps = 16/309 (5%)

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           AL L++ M     R +   ++++I   +++G LD+A +    + R G+     T+S LL+
Sbjct: 84  ALSLFNRMP----RADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLK 139

Query: 454 MHASSGQVDSAMKL-YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT---- 508
                 +   AM +    M + G  P   +Y  LL  L        A  +L  M      
Sbjct: 140 GLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTR 199

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D VS + V+   +++G +D A      M   G+  N      L      +   + 
Sbjct: 200 GGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKE 259

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTG 627
           A  +         + D+V Y +++ +L +       R +   +    HK  + + G    
Sbjct: 260 AIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLL- 318

Query: 628 PEQRKQPVLSFVREFFHGIDYELEEGAA--RYFVNVLLNYLVLMGQINRARCVWKVAYEN 685
                     ++ +    +D  +  G     Y  N+L+      G ++ A   +    + 
Sbjct: 319 ---HGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQ 375

Query: 686 KLFPKAIVF 694
            L P  + +
Sbjct: 376 GLHPNIVTY 384


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 181/370 (48%), Gaps = 6/370 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D L +++     ++L +++    + NG +   + YN ++  L K  +LE +    
Sbjct: 168 YTAIVDWLAKNKKIQDAVALMEKI----TANGCTPTIATYNALLNGLCKMGRLEEAIDLL 223

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +K++D+ C  D  +Y  L+     +   ++A+++++ M      LD   Y  +I  L ++
Sbjct: 224 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQA 283

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G++  A  +++ M  +   P     ++++D + KAGR+  +++++  M+  G  P+  +Y
Sbjct: 284 GKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVY 343

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +LI    KA K+D AL +  +M+ A   P+   + ++I+   KSG ++ A + F +M  
Sbjct: 344 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLE 403

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
           AG  P   TY+ L+     +G  D+A  +++ M+S+   P + TY  L++ L KR+ +  
Sbjct: 404 AGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTK 463

Query: 499 AAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A+     MK  G   D    S ++    K G ++        M  SG+  +    R +F 
Sbjct: 464 ASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFH 523

Query: 558 SCMKNALYES 567
            C  N + E+
Sbjct: 524 LCKANRVDEA 533



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 117/490 (23%), Positives = 198/490 (40%), Gaps = 28/490 (5%)

Query: 122 VGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQF-VPKMVHITQALKVINDSDTS 180
           VG +++  ++  AV KI + +       EL   L   +F     VH   AL         
Sbjct: 16  VGRLRRE-ISTDAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNAL--------- 65

Query: 181 LSLFRWAKRQ------------SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS 228
           L +F   KR             + ++P  E + +L      +R+ +   ++  EM  D  
Sbjct: 66  LDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDY- 124

Query: 229 KNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
             G++     +N V+  L K+ K+  +   F+    + C ID  +Y  ++          
Sbjct: 125 --GVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQ 182

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
            A  + E +    C+   +TY  ++  L K GRL+ AI L +++ +    P    + SL+
Sbjct: 183 DAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 242

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           D +GK  R   + K++ EM   G       Y +LI    +AGK+  A  ++  M   G  
Sbjct: 243 DGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCV 302

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+    + +I+   K+G++  A+ IF  ME  G  P    YS L+     + ++D A+++
Sbjct: 303 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 362

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIK 526
              M  A   P   TY  L+  L K   V+ A     EM   G   DV   ++L+  + K
Sbjct: 363 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCK 422

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
            G+ D A      M SS    N      L     K      A    +   E     D  +
Sbjct: 423 AGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFV 482

Query: 587 YTSVLAHLVR 596
           Y+S++  L +
Sbjct: 483 YSSLVDGLCK 492



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 104/209 (49%), Gaps = 2/209 (0%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A E+   M+K  C+ D  TY ++I  L KSG ++AA   F EM E   +P    +  LV 
Sbjct: 359 ALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVS 418

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
              KAG  D +  V+ +M      P+   Y +LI    K  +L  A   +  M+  G  P
Sbjct: 419 GFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPP 478

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +  +++ +++   KSGKL+    +F +MER+G +    T + L+     + +VD A+ L+
Sbjct: 479 DSFVYSSLVDGLCKSGKLEGGCMLFDEMERSG-VANSQTRTRLIFHLCKANRVDEAVSLF 537

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           N++   G+ P    Y ++++ L K   V+
Sbjct: 538 NAIRKEGM-PHPYAYNSIISTLIKSAKVN 565



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 41/250 (16%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L +    K+ ++  P    Y +L D L +S D +   + FDEM+             
Sbjct: 357 DCALEMLAQMKK-AFCTPDTITYNILIDGLCKSGDVEAARAFFDEML------------- 402

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
                                    ++ CK D  +YN+L++ F   G    A  +++ M 
Sbjct: 403 -------------------------EAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMS 437

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              CS +  TY  +I  L K  +L  A   FQ MKER   P   +++SLVD + K+G+L+
Sbjct: 438 SSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLE 497

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
               ++ EM+  G   ++     LI    KA ++D A+ L++ +R  G  P+   +  II
Sbjct: 498 GGCMLFDEMERSG-VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSII 555

Query: 418 ESHAKSGKLD 427
            +  KS K++
Sbjct: 556 STLIKSAKVN 565


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/542 (20%), Positives = 240/542 (44%), Gaps = 19/542 (3%)

Query: 163 KMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDE 222
           ++V+  +AL        +L +F W ++   +         +  VL         L LF+ 
Sbjct: 143 ELVYFVKALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFES 202

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           +  D S + + ++ AY  +I  L++A + +     F+ +     + +  +YNV++ L+  
Sbjct: 203 LKQDESYS-LDVY-AYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGK 260

Query: 283 KGLPYKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
           +G  +   + +++ M+  E S D  TY  MI +  ++     A++LFQEMKE    P+  
Sbjct: 261 RGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRV 320

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            + +L+D  GK G    + ++ +EM+  G  P+   Y  LI +YA+AG  D A  L   +
Sbjct: 321 TYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSL 380

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G  P+   +  +I +  ++ + + A+  FT+M +    P   TY+ L++++    ++
Sbjct: 381 LSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKL 440

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           D  MK++  M      P L T+ +LL       ++   + +  EMK  GY   V   ++L
Sbjct: 441 DDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNIL 500

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  Y + G VD+++   + +  +G++        L  S  +   ++  + + +   E+  
Sbjct: 501 IECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGL 560

Query: 581 KVDLVLYTSVL-AHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFT------GPEQRKQ 633
           ++    +  ++ ++    Q  Q  +++  +  + K      LC  F       G +   Q
Sbjct: 561 QLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQ 620

Query: 634 PVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIV 693
             L+ + +  H  D ++         N +++     G I RA  + +   + +L P  + 
Sbjct: 621 LALNQLYDNGHSPDIKV--------FNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVT 672

Query: 694 FD 695
           ++
Sbjct: 673 YN 674



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 180/400 (45%), Gaps = 5/400 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            P +  Y  L    N +  ++  L  F EM   +    I     YN +I    + +KL+ 
Sbjct: 386 CPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIV---TYNILIDIYGRMEKLDD 442

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
               FK + + +C  D  ++N L+  F N G+  +   ++  M++        T+ ++I 
Sbjct: 443 MMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIE 502

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              + G +D ++ +++ +     +P+   FA+L+ S+ + GR     KV  EM   G + 
Sbjct: 503 CYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQL 562

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT-MIIESHAKSGKLDIAMSI 432
           S   +  LI SYA +G+     +  DE+  +  +P  G+     + ++ K G  + A   
Sbjct: 563 SDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLA 622

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              +   G  P    ++ ++ M A  G ++ A+KL   +  A L+P   TY  L+++  +
Sbjct: 623 LNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGR 682

Query: 493 RKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
             +   A +++ EM+  G + + ++ + +L  Y K G +D A R    M ++ +R +NF 
Sbjct: 683 EGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFT 742

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              L  S     LY+ A  ++E   E   +   + + ++L
Sbjct: 743 FNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALL 782



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 140/307 (45%), Gaps = 5/307 (1%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           ++FR  KR + Y+PG + + +L +        D  + ++  ++    +  +  F+A   +
Sbjct: 480 NVFREMKR-AGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAA---L 535

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK-GE 300
           +  LA+  + +      +++ ++  ++    +  L+  + N G  ++  +  + +EK  +
Sbjct: 536 MASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAK 595

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
             L G   +  + +  K G  + A     ++ +    P   +F +++    K G ++ ++
Sbjct: 596 QPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAV 655

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           K+  E++    +P    Y  L+  Y + G    A  +  EMR AG  PN   +  ++ S+
Sbjct: 656 KLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSY 715

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K G++D A  +F DM  A   P   T++ L+  ++S G    A+ +   MT  G +P  
Sbjct: 716 TKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQ 775

Query: 481 STYTALL 487
            T+ ALL
Sbjct: 776 ITFKALL 782



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 21/233 (9%)

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--IDTQSYNVLMTLF 280
           ++H  + +G   F    + I  L K+ K  +S    K  + + CK  +D ++   L  L+
Sbjct: 570 LIHSYANSG--QFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLY 627

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
            N   P                 D   +  MI   AK G ++ A+KL +E+++   +P  
Sbjct: 628 DNGHSP-----------------DIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDG 670

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             +  L+   G+ G    + +V  EM+  G  P+   Y +L+ SY K G++D A R++ +
Sbjct: 671 VTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGD 730

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           M  A  RP+   F  ++ S++  G    A+S+   M   G  PT  T+  LL+
Sbjct: 731 MVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLD 783



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N +I   AK   +E +    +++  +  K D  +YN LM+++  +G+ YKA E+   M 
Sbjct: 638 FNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMR 697

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +   + +  TY  ++ S  K GR+D A ++F +M     RP    F +LV S    G   
Sbjct: 698 RAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYK 757

Query: 358 TSMKV--YMEMQGCGHRPSAPMYVSLIESYAK 387
            ++ V  YM   GC  +P+   + +L++ Y +
Sbjct: 758 EALSVIEYMTEHGC--QPTQITFKALLDGYNR 787



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 2/228 (0%)

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
           D C+  L      S  F  +    DE+   S+K  +S       V+ Y  K      +  
Sbjct: 564 DACHAGLIHSYANSGQFFQLRKYIDEL-EKSAKQPLSGILCKTFVLAY-CKCGMDNEAQL 621

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
              ++ D+    D + +N ++++   +G   +A ++ E + K +   DG TY  ++    
Sbjct: 622 ALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYG 681

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           + G    A ++  EM+     P+   + +L+ S  K GR+D + +V+ +M     RP   
Sbjct: 682 REGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNF 741

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
            + +L+ SY+  G    AL + + M   G +P    F  +++ + ++ 
Sbjct: 742 TFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGYNRNA 789


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 146/599 (24%), Positives = 247/599 (41%), Gaps = 67/599 (11%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
           D    L +FDEM     K G+      +N +I   ++    E S   F ++     + D 
Sbjct: 286 DLKQALDIFDEM----QKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDI 341

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            ++N L+      G    A  I  +M     S +  TY  MI    K G  + AI L+ +
Sbjct: 342 FTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHD 401

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           MKE   RP    + +L+D   K GR D ++    +M+  G +     Y +LI++Y K GK
Sbjct: 402 MKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGK 461

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
              A  L+D+M+  G  PN   ++ +I+S++K+G      ++FT+ +RAG  P    YS 
Sbjct: 462 YKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSS 521

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L++     G V+ A+ L   MT AG++P + TY +L+    +    D    +   M    
Sbjct: 522 LIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSV 581

Query: 511 YSVDVSASDVLMV--YIKDGSVDH-----ALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
             +   + +V+      +  + DH     A+     M   G++ N      +  +C + A
Sbjct: 582 QKIGERSMEVVRKPPPSQQNASDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCA 641

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCG 623
             + A  LLE          +  +   +  +                      AH  L G
Sbjct: 642 SLQEASVLLE---------QMRFFDGWVYGI----------------------AHGLLMG 670

Query: 624 LFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAY 683
           L      R+Q  +   R F      +   GAA  F N L + L   GQ   A+ V   A 
Sbjct: 671 L------REQVWVEAQRLFDEISRMDYATGAA--FYNALTDVLWHFGQRQGAQEVVVAAK 722

Query: 684 ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYG-VVPRRIKLVTG 742
             +++  A  +     + LD+  +SVGAA  A++H      + +++ G  +PR + ++TG
Sbjct: 723 RRQVWENAW-WRSEQQFCLDLHLMSVGAAQ-AMLHVWLLDLRALVWDGHALPRVLSILTG 780

Query: 743 ----------PTLKIVIAQMLSSVESPFEVSKV---VLRAPGDSVMEWFKKPIVQQFLL 788
                      T+K  +   L  +++PF+V +     L   G  V EW   P   + L+
Sbjct: 781 WGKHSKVAGVSTVKRAVELRLQEIKAPFQVGRYNEGRLVCAGHIVREWLGDPRTSKLLM 839



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 200/421 (47%), Gaps = 15/421 (3%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           + T+L L +W+ +    + G E +  L   L    +++  L  ++ MV       + L S
Sbjct: 147 NSTALLLEKWSHQ----LVGLEDFPYLLRELGNRGEWERALQGYEWMVQQ-----VHLRS 197

Query: 237 AYNRV----IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
            ++++    I  L +  K+E++   F +   +    +  +Y+ +++ +   G   +A ++
Sbjct: 198 EWSKLASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKV 257

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSG-RLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +++M+K  C  +  TY  +I +  K G  L  A+ +F EM++    P    F SL+    
Sbjct: 258 FQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCS 317

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           + G  + S +V+ EMQ  G       + +LI++  K G+++ A  +   MR     PN  
Sbjct: 318 RGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVV 377

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            ++ +I+ + K G  + A+S++ DM+ +G  P   +Y+ L++++A  G+ D A+     M
Sbjct: 378 TYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDM 437

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSV 530
              GL+  + TY AL+    K+     AA +  +MK  G   +V + S ++  Y K G  
Sbjct: 438 ERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMH 497

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
                       +G++ +  +   L +SC K  L E A  LL+   ++  + ++V Y S+
Sbjct: 498 QDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSL 557

Query: 591 L 591
           +
Sbjct: 558 I 558



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 149/311 (47%), Gaps = 2/311 (0%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A +++   +K     +   Y  M+ +  +SGR   A+K+FQ MK+   +P+   + +++D
Sbjct: 219 ALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIID 278

Query: 349 SMGKAG-RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           + GK G  L  ++ ++ EMQ  G  P    + SLI   ++ G  + + R++ EM+  G  
Sbjct: 279 ACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIE 338

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
            +   F  +I++  K G++++A SI T M      P   TYS +++ +   G  + A+ L
Sbjct: 339 QDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISL 398

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIK 526
           Y+ M  +G+RP   +Y  L+ + AK    D A     +M+ +G   DV   + L+  Y K
Sbjct: 399 YHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGK 458

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
            G    A      M   G+  N      L +S  K  +++    +   +  +  K D+VL
Sbjct: 459 QGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVL 518

Query: 587 YTSVLAHLVRC 597
           Y+S++    +C
Sbjct: 519 YSSLIDSCCKC 529


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 181/370 (48%), Gaps = 6/370 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D L +++     ++L +++    + NG +   + YN ++  L K  +LE +    
Sbjct: 37  YTTIVDWLAKNKKIQEAVALMEKI----TANGCTPTIATYNALLNGLCKMGRLEEAIDLL 92

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +K++D+ C  D  +Y  L+     K   ++A+++++ M     +LD   Y  +I  L ++
Sbjct: 93  RKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQA 152

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G++  A  +++ M  +   P     ++++D + KAGR+  +++++  M+  G  P+  +Y
Sbjct: 153 GKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVY 212

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +LI    KA K+D AL +  +M+ A   P+   + ++I+   KSG +  A + F +M  
Sbjct: 213 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLE 272

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
           AG  P   TY+ L+     +G  D+A  +++ M+S+   P + TY  L++ L KR+ +  
Sbjct: 273 AGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTK 332

Query: 499 AAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A+     MK  G   D    S ++    K G ++        M  SG+  +    R +F 
Sbjct: 333 ASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFH 392

Query: 558 SCMKNALYES 567
            C  N + E+
Sbjct: 393 LCKANRVDEA 402



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 151/360 (41%), Gaps = 1/360 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           ++ +I  L KA  L  ++   ++   + C ID  +Y  ++          +A  + E + 
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C+   +TY  ++  L K GRL+ AI L +++ +    P    + SL+D +GK  R  
Sbjct: 62  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSF 121

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + K++ EM   G       Y +LI    +AGK+  A  ++  M   G  P+    + +I
Sbjct: 122 EAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMI 181

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K+G++  A+ IF  ME  G  P    YS L+     + ++D A+++   M  A   
Sbjct: 182 DGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT 241

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P   TY  L+  L K   V  A     EM   G   DV   ++L+  + K G+ D A   
Sbjct: 242 PDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGV 301

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              M SS    N      L     K      A    +   E     D  +Y+S++  L +
Sbjct: 302 FDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCK 361



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 158/326 (48%), Gaps = 1/326 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++++L+   +  G+  +A  + +      C++D  TY  ++  LAK+ ++  A+ L +++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
                 P+   + +L++ + K GRL+ ++ +  ++   G  P    Y SLI+   K  + 
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A +L+ EM   G   +   +T +I    ++GK+  A S++  M   G +P   T S +
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++    +G++ +A++++ SM + GL P    Y+AL+  L K + +D A ++L +MK    
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           + D    ++L+    K G V  A  +   M  +G + + +    L     K    ++A  
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACG 300

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           + +    S    ++V Y ++++ L +
Sbjct: 301 VFDDMSSSRCSPNVVTYGTLISGLCK 326



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 2/234 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  L KA K++ +     ++  + C  DT +YN+L+      G    A   ++ M 
Sbjct: 212 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEML 271

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  D  TY ++I    K+G  DAA  +F +M      P+   + +L+  + K  +L 
Sbjct: 272 EAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLT 331

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +   Y  M+  G  P + +Y SL++   K+GKL+    L+DEM  +G   N    T +I
Sbjct: 332 KASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLI 390

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
               K+ ++D A+S+F  + + G +P P  Y+ ++     SG+V+    +Y  M
Sbjct: 391 FHLCKANRVDEAVSLFNAIRKEG-MPHPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 41/259 (15%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L +    K+ ++  P    Y +L D L +S D     + FDEM+             
Sbjct: 226 DCALEMLAQMKK-AFCTPDTITYNILIDGLCKSGDVAAARAFFDEML------------- 271

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
                                    ++ CK D  +YN+L++ F   G    A  +++ M 
Sbjct: 272 -------------------------EAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMS 306

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              CS +  TY  +I  L K  +L  A   +Q MKER   P   +++SLVD + K+G+L+
Sbjct: 307 SSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLE 366

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
               ++ EM+  G   ++     LI    KA ++D A+ L++ +R  G  P+   +  II
Sbjct: 367 GGCMLFDEMERSG-VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSII 424

Query: 418 ESHAKSGKLDIAMSIFTDM 436
            +  KSGK++   +++ +M
Sbjct: 425 SALIKSGKVNEGQAVYQEM 443


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 170/355 (47%), Gaps = 17/355 (4%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S Y++V+ YL  A K+E+++  F+++       D  +Y +++  F   GL  +A + +  
Sbjct: 484 STYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNE 543

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +  C+ +  TY  +I +  K+ ++  A +LF+ M      P+   +++L+D   KAG+
Sbjct: 544 MREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ 603

Query: 356 LDTSMKVYMEMQGC----------------GHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
           ++ + +++  M G                   RP+   Y +L++ + K+ +++ A +L D
Sbjct: 604 VEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLD 663

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            M + G  PN  ++  +I+   K GKLD A  + T+M   GF  T  TYS L++ +    
Sbjct: 664 AMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVK 723

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           + D A K+ + M      P +  YT ++  L K    D A K++  M+  G   +V    
Sbjct: 724 RQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYT 783

Query: 520 VLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            ++  +   G ++  L  L  MGS G+  N    R L + C KN   + A  LLE
Sbjct: 784 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 174/408 (42%), Gaps = 23/408 (5%)

Query: 119 HVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALK-VINDS 177
            ++  G+    +N S+  + +    +++    +  ++    F+P     ++ L  + N S
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNAS 497

Query: 178 DTSLS--LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
              L+  LF   KR    V     Y ++ D   ++   +     F+EM        +  +
Sbjct: 498 KMELAFLLFEEMKRGGL-VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 556

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           +A   +I    KA K+  +   F+ +L   C  +  +Y+ L+      G   KA +I+E 
Sbjct: 557 TA---LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFER 613

Query: 296 MEKGECSLDGS----------------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           M   +   D                  TY  ++    KS R++ A KL   M      P+
Sbjct: 614 MCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPN 673

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
             ++ +L+D + K G+LD + +V  EM   G   +   Y SLI+ Y K  + D A ++  
Sbjct: 674 QIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLS 733

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           +M      PN  ++T +I+   K GK D A  +   ME  G  P   TY+ +++     G
Sbjct: 734 KMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIG 793

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           ++++ ++L   M S G+ P   TY  L+    K   +DVA  +L EMK
Sbjct: 794 KIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMK 841



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 142/313 (45%), Gaps = 17/313 (5%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L  +G+ + A  + +EM  + F P  + ++ +++ +  A +++ +  ++ EM+  G    
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  +++S+ KAG ++ A + ++EMR  G  PN   +T +I ++ K+ K+  A  +F 
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA----------------GLRP 478
            M   G LP   TYS L++ H  +GQV+ A +++  M  +                  RP
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 637

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
            + TY ALL    K   V+ A K+L  M   G   +    D L+  + K G +D A    
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             M   G     +    L +   K    + A  +L   +E++   ++V+YT ++  L + 
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757

Query: 598 QDEQNERHLMAIL 610
                   LM ++
Sbjct: 758 GKTDEAYKLMQMM 770



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 138/548 (25%), Positives = 211/548 (38%), Gaps = 88/548 (16%)

Query: 119 HVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH--ITQALKVIND 176
           H +V  I +  ++A A+A  V  V+   +G + +  L   QF  K+    + + L++I  
Sbjct: 88  HQVVPIITQSSIDARAIADAVSGVDDV-FGRKSQKFLR--QFREKLSESLVIEVLRLIAR 144

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDV-------------LNESRDFDGML--SLFD 221
               +S F WA RQ  Y      Y  L D+             L + RD D  +     +
Sbjct: 145 PSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLN 204

Query: 222 EMVHDSSKNG---ISL--------------FSAYNRVIQYLAKADKL--------EMSYC 256
            +V    +NG   I+L               S YN +IQ   KAD+L        EMS  
Sbjct: 205 VLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLA 264

Query: 257 ----------CFKKVLDSDCKI-----------------DTQSYNVLMTLFLNKGLPYKA 289
                     CF   L   CK+                 DT  Y  L++      L  +A
Sbjct: 265 NLRMDGFTLRCFAYSL---CKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEA 321

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            +    M    C  +  TY  ++       +L    ++   M      PS  IF SLV +
Sbjct: 322 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA------KAGKLDTALRLWDEMRI 403
              +G    + K+  +M  CGH P   +Y  LI S            LD A + + EM  
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLA 441

Query: 404 AGF---RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           AG    + N   FT  + S   +GK + A S+  +M   GF+P  STYS +L    ++ +
Sbjct: 442 AGVVLNKINVSSFTRCLCS---AGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASK 498

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           ++ A  L+  M   GL   + TYT ++    K  L++ A K   EM+ +G + +V     
Sbjct: 499 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 558

Query: 521 LM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           L+  Y+K   V +A      M S G   N      L +   K    E A  + E    S 
Sbjct: 559 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 618

Query: 580 AKVDLVLY 587
              D+ +Y
Sbjct: 619 DVPDVDMY 626



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 118/250 (47%), Gaps = 35/250 (14%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A ++   M +  C+ +   Y  MI  L K G+ D A KL Q M+E+  +P+   + +++D
Sbjct: 728 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR------ 402
             G  G+++T +++   M   G  P+   Y  LI+   K G LD A  L +EM+      
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847

Query: 403 -IAGFR--------------------------PNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             AG+R                          P   ++ ++I++  K+ +L++A+ +  +
Sbjct: 848 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 907

Query: 436 ME--RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           +    A  +   STY+ L+E    + +V++A +L++ MT  G+ P + ++ +L+  L + 
Sbjct: 908 VATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRN 967

Query: 494 KLVDVAAKIL 503
             +  A  +L
Sbjct: 968 SKISEALLLL 977



 Score = 47.0 bits (110), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF----NIFASLVDSMGKAGRLDTSMK 361
           S Y L+I +L K+ RL+ A++L +E+    F  +     + + SL++S+  A +++T+ +
Sbjct: 883 SVYRLLIDNLIKAQRLEMALRLLEEVA--TFSATLVDYSSTYNSLIESLCLANKVETAFQ 940

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
           ++ EM   G  P    + SLI+   +  K+  AL L D
Sbjct: 941 LFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLD 978


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 172/355 (48%), Gaps = 17/355 (4%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S Y++V+ YL  A K+E+++  F+++       D  +Y +++  F   GL  +A + +  
Sbjct: 484 STYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNE 543

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +  C+ +  TY  +I +  K+ ++  A +LF+ M      P+   +++L+D   KAG+
Sbjct: 544 MREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ 603

Query: 356 LDTSMKVYMEMQGC----------------GHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
           ++ + +++  M G                   RP+   Y +L++ + K+ +++ A +L D
Sbjct: 604 VEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLD 663

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            M + G  PN  ++  +I+   K GKLD A  + T+M   GF  T  TYS L++ +    
Sbjct: 664 AMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVK 723

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSAS 518
           + D A K+ + M      P +  YT ++  L K    D A K++  M+  G   + V+ +
Sbjct: 724 RQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYT 783

Query: 519 DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            ++  +   G ++  L  L  MGS G+  N    R L + C KN   + A  LLE
Sbjct: 784 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 174/408 (42%), Gaps = 23/408 (5%)

Query: 119 HVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALK-VINDS 177
            ++  G+    +N S+  + +    +++    +  ++    F+P     ++ L  + N S
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNAS 497

Query: 178 DTSLS--LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
              L+  LF   KR    V     Y ++ D   ++   +     F+EM        +  +
Sbjct: 498 KMELAFLLFEEMKRGGL-VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 556

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           +A   +I    KA K+  +   F+ +L   C  +  +Y+ L+      G   KA +I+E 
Sbjct: 557 TA---LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFER 613

Query: 296 MEKGECSLDGS----------------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           M   +   D                  TY  ++    KS R++ A KL   M      P+
Sbjct: 614 MCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPN 673

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
             ++ +L+D + K G+LD + +V  EM   G   +   Y SLI+ Y K  + D A ++  
Sbjct: 674 QIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLS 733

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           +M      PN  ++T +I+   K GK D A  +   ME  G  P   TY+ +++     G
Sbjct: 734 KMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIG 793

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           ++++ ++L   M S G+ P   TY  L+    K   +DVA  +L EMK
Sbjct: 794 KIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMK 841



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 142/313 (45%), Gaps = 17/313 (5%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L  +G+ + A  + +EM  + F P  + ++ +++ +  A +++ +  ++ EM+  G    
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  +++S+ KAG ++ A + ++EMR  G  PN   +T +I ++ K+ K+  A  +F 
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA----------------GLRP 478
            M   G LP   TYS L++ H  +GQV+ A +++  M  +                  RP
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 637

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
            + TY ALL    K   V+ A K+L  M   G   +    D L+  + K G +D A    
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             M   G     +    L +   K    + A  +L   +E++   ++V+YT ++  L + 
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757

Query: 598 QDEQNERHLMAIL 610
                   LM ++
Sbjct: 758 GKTDEAYKLMQMM 770



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 138/548 (25%), Positives = 211/548 (38%), Gaps = 88/548 (16%)

Query: 119 HVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH--ITQALKVIND 176
           H +V  I +  ++A A+A  V  V+   +G + +  L   QF  K+    + + L++I  
Sbjct: 88  HQVVPIITQSSIDARAIADAVSGVDDV-FGRKSQKFLR--QFREKLSESLVIEVLRLIAR 144

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDV-------------LNESRDFDGML--SLFD 221
               +S F WA RQ  Y      Y  L D+             L + RD D  +     +
Sbjct: 145 PSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLN 204

Query: 222 EMVHDSSKNG---ISL--------------FSAYNRVIQYLAKADKL--------EMSYC 256
            +V    +NG   I+L               S YN +IQ   KAD+L        EMS  
Sbjct: 205 VLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLA 264

Query: 257 ----------CFKKVLDSDCKI-----------------DTQSYNVLMTLFLNKGLPYKA 289
                     CF   L   CK+                 DT  Y  L++      L  +A
Sbjct: 265 NLRMDGFTLRCFAYSL---CKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEA 321

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            +    M    C  +  TY  ++       +L    ++   M      PS  IF SLV +
Sbjct: 322 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA------KAGKLDTALRLWDEMRI 403
              +G    + K+  +M  CGH P   +Y  LI S            LD A + + EM  
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLA 441

Query: 404 AGF---RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           AG    + N   FT  + S   +GK + A S+  +M   GF+P  STYS +L    ++ +
Sbjct: 442 AGVVLNKINVSSFTRCLCS---AGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASK 498

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           ++ A  L+  M   GL   + TYT ++    K  L++ A K   EM+ +G + +V     
Sbjct: 499 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 558

Query: 521 LM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           L+  Y+K   V +A      M S G   N      L +   K    E A  + E    S 
Sbjct: 559 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 618

Query: 580 AKVDLVLY 587
              D+ +Y
Sbjct: 619 DVPDVDMY 626



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 118/250 (47%), Gaps = 35/250 (14%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A ++   M +  C+ +   Y  MI  L K G+ D A KL Q M+E+  +P+   + +++D
Sbjct: 728 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR------ 402
             G  G+++T +++   M   G  P+   Y  LI+   K G LD A  L +EM+      
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847

Query: 403 -IAGFR--------------------------PNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             AG+R                          P   ++ ++I++  K+ +L++A+ +  +
Sbjct: 848 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 907

Query: 436 ME--RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           +    A  +   STY+ L+E    + +V++A +L++ MT  G+ P + ++ +L+  L + 
Sbjct: 908 VATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRN 967

Query: 494 KLVDVAAKIL 503
             +  A  +L
Sbjct: 968 SKISEALLLL 977



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF----NIFASLVDSMGKAGRLDTSMK 361
           S Y L+I +L K+ RL+ A++L +E+    F  +     + + SL++S+  A +++T+ +
Sbjct: 883 SVYRLLIDNLIKAQRLEMALRLLEEVA--TFSATLVDYSSTYNSLIESLCLANKVETAFQ 940

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
           ++ EM   G  P    + SLI+   +  K+  AL L D
Sbjct: 941 LFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLD 978


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/501 (23%), Positives = 220/501 (43%), Gaps = 25/501 (4%)

Query: 111 SVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQA 170
           S EP     + +     PF     V+KI  +++  KW  E  ++L  L    K  H+   
Sbjct: 29  SSEPHPSSPLPISSTTNPF--PELVSKISTILSSPKW--EHSSELCHLSPKLKPHHVVNI 84

Query: 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF----------------D 214
           L+   ++D+ L  F W  R+ ++     C+V + + L   R F                +
Sbjct: 85  LQTHKNTDSVLRFFFWISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNE 144

Query: 215 G---MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           G    ++ F   ++     G +L S    +IQ L K D ++++   + K+L+S  +    
Sbjct: 145 GEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQ-LGKFDMVDLARDMYIKMLNSGIRPSLL 203

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++N ++ +   KG   +A  I   + + +   +  TY  +I    ++  LD A  +F  M
Sbjct: 204 TFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRM 263

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            +    P+   +++L++ +   GRL+ +M +  EM   G  P+   Y   + S   AG  
Sbjct: 264 VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCS 323

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A+ L  +M+  G  PN   FT +I   ++ GK +IA+ ++  M   G +PT  TY+ L
Sbjct: 324 SEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNAL 383

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +      G+ ++A  ++  M S G  P   TY  ++        +  A  I  +M   G 
Sbjct: 384 INQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGS 443

Query: 512 SVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           S +V   + L+  Y K G++++A+R L  M  +G++ + +   +L     +    E A  
Sbjct: 444 SPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATS 503

Query: 571 LLETYVESAAKVDLVLYTSVL 591
           L    +E     + V YT+++
Sbjct: 504 LFYGMMEHGISPNHVTYTAII 524



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 186/442 (42%), Gaps = 43/442 (9%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP  + +  L   L+    F+  + L+ +M+ D     +     YN +I  L    + E 
Sbjct: 339 VPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGL---VPTTVTYNALINQLCVEGRFET 395

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++  FK +L       TQ+YN ++  F   G   KA  I++ M K   S +  TY  +I 
Sbjct: 396 AFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIY 455

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              K G L+ A++L + MK    +P    +  L+    + G+L+ +  ++  M   G  P
Sbjct: 456 GYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISP 515

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEM--------------RIAGFR------------ 407
           +   Y ++I+ Y    K+D AL L+ +M               I+GF             
Sbjct: 516 NHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFC 575

Query: 408 ---------PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
                    PN   +T  I+   ++G+  +A  IF +ME+  + P   TYS L+      
Sbjct: 576 GKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQE 635

Query: 459 GQVDSAMKLYN---SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           G+ + A ++YN    +T  G  P + TYT L+  L        A ++++ M+  G     
Sbjct: 636 GRAEDA-EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSE 694

Query: 516 SASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
                L++   K+  V+ AL     M + G + +    + L  +  K    E A+ + +T
Sbjct: 695 EIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQT 754

Query: 575 YVESAAKVDLVLYTSVLAHLVR 596
            +E     D V +T +L  L++
Sbjct: 755 MLEKHWNSDEVAWTVLLDGLLK 776



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 167/364 (45%), Gaps = 7/364 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    +   L++++  F +++   C  ++ +Y+ L+    ++G   +A ++ E M
Sbjct: 239 TYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEM 298

Query: 297 -EKGECSLDGSTYELMIP--SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            +KG   ++ + Y   IP  SL  +G    A++L  +MK+R   P+   F +L+  + + 
Sbjct: 299 VQKG---IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRD 355

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G+ + ++ +Y +M   G  P+   Y +LI      G+ +TA  ++  M   G  P+   +
Sbjct: 356 GKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTY 415

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             II+     G +  AM IF  M +AG  P   TY+ L+  +   G +++AM+L   M  
Sbjct: 416 NEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKG 475

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
            GL+P   TYT L++  ++   ++ A  +   M   G S + V+ + ++  Y     VD 
Sbjct: 476 NGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDD 535

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           AL     M  SG   ++     +     K      A+      V+     +++ YTS + 
Sbjct: 536 ALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFID 595

Query: 593 HLVR 596
            L R
Sbjct: 596 GLCR 599



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 142/323 (43%), Gaps = 7/323 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           P    Y  L    +     +   SLF  M+ H  S N ++    Y  +I       K++ 
Sbjct: 480 PDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVT----YTAIIDGYFNLAKVDD 535

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F K+++S     +Q+YNV+++ F       +A      M K     +  TY   I 
Sbjct: 536 ALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFID 595

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL-DTSM-KVYMEMQGCGH 371
            L ++GR   A K+F EM++RN+ P+   ++SL+  + + GR  D  M  +   +   G 
Sbjct: 596 GLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGC 655

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+   Y +L++     G+   A +L   M+  G +P+  ++  ++    K+ K++ A++
Sbjct: 656 EPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALN 715

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           IF  M+  GF    S Y  L+        ++ A  ++ +M           +T LL  L 
Sbjct: 716 IFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLL 775

Query: 492 KRKLVDVAAKILLEMKTMGYSVD 514
           K    D+  K+L  M++   +++
Sbjct: 776 KEGETDLCLKLLHVMESRNCTLN 798


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/501 (23%), Positives = 220/501 (43%), Gaps = 25/501 (4%)

Query: 111 SVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQA 170
           S EP     + +     PF     V+KI  +++  KW  E  ++L  L    K  H+   
Sbjct: 29  SSEPHPSSPLPISSTTNPF--PELVSKISTILSSPKW--EHSSELCHLSPKLKPHHVVNI 84

Query: 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF----------------D 214
           L+   ++D+ L  F W  R+ ++     C+V + + L   R F                +
Sbjct: 85  LQTHKNTDSVLRFFFWISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNE 144

Query: 215 G---MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           G    ++ F   ++     G +L S    +IQ L K D ++++   + K+L+S  +    
Sbjct: 145 GEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQ-LGKFDMVDLARDMYIKMLNSGIRPSLL 203

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++N ++ +   KG   +A  I   + + +   +  TY  +I    ++  LD A  +F  M
Sbjct: 204 TFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRM 263

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            +    P+   +++L++ +   GRL+ +M +  EM   G  P+   Y   + S   AG  
Sbjct: 264 VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCS 323

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A+ L  +M+  G  PN   FT +I   ++ GK +IA+ ++  M   G +PT  TY+ L
Sbjct: 324 SEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNAL 383

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +      G+ ++A  ++  M S G  P   TY  ++        +  A  I  +M   G 
Sbjct: 384 INQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGS 443

Query: 512 SVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           S +V   + L+  Y K G++++A+R L  M  +G++ + +   +L     +    E A  
Sbjct: 444 SPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATS 503

Query: 571 LLETYVESAAKVDLVLYTSVL 591
           L    +E     + V YT+++
Sbjct: 504 LFYGMMEHGISPNHVTYTAII 524



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 187/442 (42%), Gaps = 43/442 (9%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP  + +  L   L+    F+  + L+ +M+ D     +     YN +I  L    + E 
Sbjct: 339 VPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGL---VPTTVTYNALINQLCVEGRFET 395

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++  FK +L       TQ+YN ++  F   G   KA  I++ M K   S +  TY  +I 
Sbjct: 396 AFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIY 455

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              K G L+ A++L + MK    +P    +  L+    + G+L+ +  ++  M   G  P
Sbjct: 456 GYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISP 515

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEM--------------RIAGFR------------ 407
           +   Y ++I+ Y    K+D AL L+ +M               I+GF             
Sbjct: 516 NHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFC 575

Query: 408 ---------PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
                    PN   +T  I+   ++G+  +A  IF +ME+  + P   TYS L+      
Sbjct: 576 GKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQE 635

Query: 459 GQVDSAMKLYN---SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           G+ + A ++YN    +T  G  P + TYT L+  L        A ++++ M+  G     
Sbjct: 636 GRAEDA-EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSE 694

Query: 516 SASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
                L++   K+  V+ AL     M + G + +    + L  +  K    E A+ + +T
Sbjct: 695 EIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQT 754

Query: 575 YVESAAKVDLVLYTSVLAHLVR 596
            +E     D V++T +L  L++
Sbjct: 755 MLEKHWNSDEVVWTVLLDGLLK 776



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 167/364 (45%), Gaps = 7/364 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    +   L++++  F +++   C  ++ +Y+ L+    ++G   +A ++ E M
Sbjct: 239 TYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEM 298

Query: 297 -EKGECSLDGSTYELMIP--SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            +KG   ++ + Y   IP  SL  +G    A++L  +MK+R   P+   F +L+  + + 
Sbjct: 299 VQKG---IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRD 355

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G+ + ++ +Y +M   G  P+   Y +LI      G+ +TA  ++  M   G  P+   +
Sbjct: 356 GKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTY 415

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             II+     G +  AM IF  M +AG  P   TY+ L+  +   G +++AM+L   M  
Sbjct: 416 NEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKG 475

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
            GL+P   TYT L++  ++   ++ A  +   M   G S + V+ + ++  Y     VD 
Sbjct: 476 NGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDD 535

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           AL     M  SG   ++     +     K      A+      V+     +++ YTS + 
Sbjct: 536 ALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFID 595

Query: 593 HLVR 596
            L R
Sbjct: 596 GLCR 599



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 142/323 (43%), Gaps = 7/323 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           P    Y  L    +     +   SLF  M+ H  S N ++    Y  +I       K++ 
Sbjct: 480 PDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVT----YTAIIDGYFNLAKVDD 535

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F K+++S     +Q+YNV+++ F       +A      M K     +  TY   I 
Sbjct: 536 ALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFID 595

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL-DTSM-KVYMEMQGCGH 371
            L ++GR   A K+F EM++RN+ P+   ++SL+  + + GR  D  M  +   +   G 
Sbjct: 596 GLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGC 655

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+   Y +L++     G+   A +L   M+  G +P+  ++  ++    K+ K++ A++
Sbjct: 656 EPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALN 715

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           IF  M+  GF    S Y  L+        ++ A  ++ +M           +T LL  L 
Sbjct: 716 IFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLL 775

Query: 492 KRKLVDVAAKILLEMKTMGYSVD 514
           K    D+  K+L  M++   +++
Sbjct: 776 KEGETDLCLKLLHVMESRNCTLN 798


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 170/355 (47%), Gaps = 17/355 (4%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S Y++V+ YL  A K+E+++  F+++       D  +Y +++  F   GL  +A + +  
Sbjct: 443 STYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNE 502

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +  C+ +  TY  +I +  K+ ++  A +LF+ M      P+   +++L+D   KAG+
Sbjct: 503 MREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ 562

Query: 356 LDTSMKVYMEMQGC----------------GHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
           ++ + +++  M G                   RP+   Y +L++ + K+ +++ A +L D
Sbjct: 563 VEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLD 622

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            M + G  PN  ++  +I+   K GKLD A  + T+M   GF  T  TYS L++ +    
Sbjct: 623 AMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVK 682

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           + D A K+ + M      P +  YT ++  L K    D A K++  M+  G   +V    
Sbjct: 683 RQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYT 742

Query: 520 VLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            ++  +   G ++  L  L  MGS G+  N    R L + C KN   + A  LLE
Sbjct: 743 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 797



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 174/408 (42%), Gaps = 23/408 (5%)

Query: 119 HVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALK-VINDS 177
            ++  G+    +N S+  + +    +++    +  ++    F+P     ++ L  + N S
Sbjct: 397 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNAS 456

Query: 178 DTSLS--LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
              L+  LF   KR    V     Y ++ D   ++   +     F+EM        +  +
Sbjct: 457 KMELAFLLFEEMKRGGL-VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 515

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           +A   +I    KA K+  +   F+ +L   C  +  +Y+ L+      G   KA +I+E 
Sbjct: 516 TA---LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFER 572

Query: 296 MEKGECSLDGS----------------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           M   +   D                  TY  ++    KS R++ A KL   M      P+
Sbjct: 573 MCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPN 632

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
             ++ +L+D + K G+LD + +V  EM   G   +   Y SLI+ Y K  + D A ++  
Sbjct: 633 QIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLS 692

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           +M      PN  ++T +I+   K GK D A  +   ME  G  P   TY+ +++     G
Sbjct: 693 KMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIG 752

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           ++++ ++L   M S G+ P   TY  L+    K   +DVA  +L EMK
Sbjct: 753 KIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMK 800



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 142/313 (45%), Gaps = 17/313 (5%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L  +G+ + A  + +EM  + F P  + ++ +++ +  A +++ +  ++ EM+  G    
Sbjct: 417 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 476

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  +++S+ KAG ++ A + ++EMR  G  PN   +T +I ++ K+ K+  A  +F 
Sbjct: 477 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 536

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA----------------GLRP 478
            M   G LP   TYS L++ H  +GQV+ A +++  M  +                  RP
Sbjct: 537 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 596

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
            + TY ALL    K   V+ A K+L  M   G   +    D L+  + K G +D A    
Sbjct: 597 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 656

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             M   G     +    L +   K    + A  +L   +E++   ++V+YT ++  L + 
Sbjct: 657 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 716

Query: 598 QDEQNERHLMAIL 610
                   LM ++
Sbjct: 717 GKTDEAYKLMQMM 729



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 138/548 (25%), Positives = 211/548 (38%), Gaps = 88/548 (16%)

Query: 119 HVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH--ITQALKVIND 176
           H +V  I +  ++A A+A  V  V+   +G + +  L   QF  K+    + + L++I  
Sbjct: 47  HQVVPIITQSSIDARAIADAVTGVDDV-FGRKSQKFLR--QFREKLSESLVIEVLRLIAR 103

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDV-------------LNESRDFDGML--SLFD 221
               +S F WA RQ  Y      Y  L D+             L + RD D  +     +
Sbjct: 104 PSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGQFLN 163

Query: 222 EMVHDSSKNG---ISL--------------FSAYNRVIQYLAKADKL--------EMSYC 256
            +V    +NG   I+L               S YN +IQ   KAD+L        EMS  
Sbjct: 164 VLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLA 223

Query: 257 ----------CFKKVLDSDCKI-----------------DTQSYNVLMTLFLNKGLPYKA 289
                     CF   L   CK+                 DT  Y  L++      L  +A
Sbjct: 224 NLRMDGFTLRCFAYSL---CKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEA 280

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            +    M    C  +  TY  ++       +L    ++   M      PS  IF SLV +
Sbjct: 281 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 340

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK------LDTALRLWDEMRI 403
              +G    + K+  +M  CGH P   +Y  LI S            LD A + + EM  
Sbjct: 341 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLA 400

Query: 404 AGF---RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           AG    + N   FT  + S   +GK + A S+  +M   GF+P  STYS +L    ++ +
Sbjct: 401 AGVVLNKINVSSFTRCLCS---AGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASK 457

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           ++ A  L+  M   GL   + TYT ++    K  L++ A K   EM+ +G + +V     
Sbjct: 458 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 517

Query: 521 LM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           L+  Y+K   V +A      M S G   N      L +   K    E A  + E    S 
Sbjct: 518 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 577

Query: 580 AKVDLVLY 587
              D+ +Y
Sbjct: 578 DVPDVDMY 585



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 118/250 (47%), Gaps = 35/250 (14%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A ++   M +  C+ +   Y  MI  L K G+ D A KL Q M+E+  +P+   + +++D
Sbjct: 687 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 746

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR------ 402
             G  G+++T +++   M   G  P+   Y  LI+   K G LD A  L +EM+      
Sbjct: 747 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 806

Query: 403 -IAGFR--------------------------PNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             AG+R                          P   ++ ++I++  K+ +L++A+ +  +
Sbjct: 807 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 866

Query: 436 ME--RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           +    A  +   STY+ L+E    + +V++A +L++ MT  G+ P + ++ +L+  L + 
Sbjct: 867 VATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRN 926

Query: 494 KLVDVAAKIL 503
             +  A  +L
Sbjct: 927 SKISEALLLL 936



 Score = 47.0 bits (110), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF----NIFASLVDSMGKAGRLDTSMK 361
           S Y L+I +L K+ RL+ A++L +E+    F  +     + + SL++S+  A +++T+ +
Sbjct: 842 SVYRLLIDNLIKAQRLEMALRLLEEVA--TFSATLVDYSSTYNSLIESLCLANKVETAFQ 899

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
           ++ EM   G  P    + SLI+   +  K+  AL L D
Sbjct: 900 LFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLD 937


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 171/372 (45%), Gaps = 33/372 (8%)

Query: 172 KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           K+ N    +LS FRWA++Q  +    E +  L + L + R F  + +L DEM      NG
Sbjct: 95  KLSNAGILALSFFRWAEKQQGFNHNTEIFHALIEALGKIRQFKMIWNLVDEMKQRKLLNG 154

Query: 232 ISL-------------------------------FSAYNRVIQYLAKAD-KLEMSYCCFK 259
            +                                 S +N++I  L K+   +E +   F 
Sbjct: 155 DTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFD 214

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+   + + + +SY +L+  +  +    K  E+   M+      D  TY ++I +  K+ 
Sbjct: 215 KMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAK 274

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           + D AI ++ +M  +N  PS +I+ + +  +G   R+D + + + + +  G  P AP Y 
Sbjct: 275 KYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYN 334

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM-ER 438
           +++ +Y  + ++D A R+  EM+  G  PN   + +I+    K G+   A S+F  M   
Sbjct: 335 AVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSE 394

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P+ STY+ ++ M  +  Q+D AM ++N M   G+ PG+  ++ L+  L     +D 
Sbjct: 395 TGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDD 454

Query: 499 AAKILLEMKTMG 510
           A +   +M  +G
Sbjct: 455 ACRYFQQMLDVG 466



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 128/269 (47%), Gaps = 10/269 (3%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG-RLDTSMK 361
           L+G T+ L+     ++  +  A+K F+ M++   +P  + F  L+D + K+   ++ + +
Sbjct: 152 LNGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQE 211

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           ++ +M+     P+   Y  LIE +++   L     +  EM+  GF+P+   + +II ++ 
Sbjct: 212 LFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYC 271

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           K+ K D A+ I+ DM      P+P  Y   +    +  ++D A + +    ++G  P   
Sbjct: 272 KAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAP 331

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY-IKDGSVDHALRWLRFM 540
           TY A+++       +D A +I+ EMK +G   +    D+++V+ IK G    A    + M
Sbjct: 332 TYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRM 391

Query: 541 GSS-----GIRTNNFIVRQLFESCMKNAL 564
            S       + T   +VR     C +N L
Sbjct: 392 SSETGCEPSVSTYAIMVRMF---CNENQL 417



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 118/280 (42%), Gaps = 5/280 (1%)

Query: 188 KRQSWYV-PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
           K + W + P  + Y +L +  ++ ++   +  +  EM  D  +  +     Y  +I    
Sbjct: 215 KMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVV---TYGIIINAYC 271

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306
           KA K + +   +  +L  +       Y   +T   N     +AFE +E  +      +  
Sbjct: 272 KAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAP 331

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY  ++ +   S R+D A ++  EMKE    P+   +  ++  + K GR   +  V+  M
Sbjct: 332 TYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRM 391

Query: 367 QG-CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
               G  PS   Y  ++  +    +LD A+ +W+EM+  G  P   +F+ +I S     K
Sbjct: 392 SSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENK 451

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
           LD A   F  M   G  PT + +S       ++G  ++ +
Sbjct: 452 LDDACRYFQQMLDVGIRPTANMFSAFKRALMAAGMENTVI 491


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/465 (22%), Positives = 208/465 (44%), Gaps = 16/465 (3%)

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYL 245
           A R S   P    Y  L     E+RD +G ++  +EM+      GI L  A +  +I   
Sbjct: 42  AMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEML----SQGIQLNEAVFCSIISGY 97

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
           A A   E +   F+K    +       YN ++  +   G       +   ME+     + 
Sbjct: 98  ASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNL 157

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
             Y  ++   A+    +  +  F  +K     P+   +  +V    KAG +  ++ +  E
Sbjct: 158 GLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEE 217

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G  P+  +Y  +++ YA+ G    A ++W++M  AG +P+  ++ +++ +  K+G+
Sbjct: 218 MDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGR 277

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           +D A+ +  ++E    LPT  TY+ +L+ +   G +  A+++++ + +AGLRPG+ +Y +
Sbjct: 278 MDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNS 337

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSG 544
           LL+ LAK + ++ A  +L EM   G   +  +   L   Y + G V+ A    + M    
Sbjct: 338 LLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKEN 397

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
           +  +      L ++C K+   + A  + +   ++  K + + Y ++L    R  +    R
Sbjct: 398 LAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKAR 457

Query: 605 HLMAILSATKHKAH-------AFLCGLF-TGPEQRKQPVLSFVRE 641
            L+  +   KH  H       +F+   F +G  +     L+ +RE
Sbjct: 458 DLLNDMQ--KHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMRE 500



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 175/399 (43%), Gaps = 4/399 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VPG   Y  +     ++ + + + +L  +M  +  +  + L   Y  V+   A+    E 
Sbjct: 119 VPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGL---YTTVLNGFAEIRDEEK 175

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
               F ++          +Y  ++ LF   G   KA +I E M+K   S +   Y +++ 
Sbjct: 176 CLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMD 235

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
             A+ G   AA K++++M     +P   I+  LV +  KAGR+D ++ V   ++     P
Sbjct: 236 GYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLP 295

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y S+++ Y K G +  AL ++D ++ AG RP    +  ++   AK+ +++ A  + 
Sbjct: 296 TIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLML 355

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +M   G +P   +Y+ L E +A +G V+ A  ++  M    L   +  Y ALL    K 
Sbjct: 356 NEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKS 415

Query: 494 KLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
             +  AA++  ++   G   + ++   +L  + + G +  A   L  M   G   +    
Sbjct: 416 GAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICY 475

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               ++C ++   E     L    E   +V+   YT+++
Sbjct: 476 TSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLI 514



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 177/393 (45%), Gaps = 4/393 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L D      D     + F+ M     K  + +   Y  +I   A+A  +E +  C +
Sbjct: 20  YGLLVDFYARHGDKVAARATFEAMRASHIKPNVHI---YTSLIHAYAEARDMEGAVACTE 76

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++L    +++   +  +++ + + G    A   +E  +       G  Y  ++ +  ++G
Sbjct: 77  EMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAG 136

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            ++    L  +M+E  F+ +  ++ ++++   +    +  +  +  ++ CG  P+A  Y 
Sbjct: 137 NMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYG 196

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            +++ + KAG +  AL + +EM   G  PN  ++ MI++ +A+ G    A  ++ DM  A
Sbjct: 197 CIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSA 256

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P    Y+ L+     +G++D A+ +  ++ +  L P + TYT++L    K   +  A
Sbjct: 257 GLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKA 316

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            ++   +KT G     VS + +L    K   +++A   L  M ++G+  N      L E 
Sbjct: 317 LEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEG 376

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             +    E A  + +   +    +D+V Y ++L
Sbjct: 377 YARAGDVEKAFGMFQRMKKENLAIDIVAYGALL 409



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 154/338 (45%), Gaps = 1/338 (0%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           + Y +L+  +   G    A   +E+M       +   Y  +I + A++  ++ A+   +E
Sbjct: 18  REYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEE 77

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M  +  + +  +F S++     AG  + +   + + +     P   +Y S++++Y +AG 
Sbjct: 78  MLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGN 137

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           ++T   L  +M   GF+ N GL+T ++   A+    +  +S F  ++  G  PT +TY C
Sbjct: 138 METVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGC 197

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           ++++   +G +  A+ +   M   G+ P    Y  ++   A+      A K+  +M + G
Sbjct: 198 IVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAG 257

Query: 511 YSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
              D+   ++L+  + K G +D AL  L  + ++ +         + +  +K    + A 
Sbjct: 258 LKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKAL 317

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
            + +    +  +  +V Y S+L+ L + +  +N R ++
Sbjct: 318 EVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLML 355



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 114/258 (44%), Gaps = 2/258 (0%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P    +  LVD   + G    +   +  M+    +P+  +Y SLI +YA+A  ++ A+ 
Sbjct: 14  KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVA 73

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
             +EM   G + N  +F  II  +A +G  + A   F   +    +P    Y+ +++ + 
Sbjct: 74  CTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYC 133

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDV 515
            +G +++   L   M   G +  L  YT +L   A+ +  +        +K  G S    
Sbjct: 134 QAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAA 193

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           +   ++ ++ K G++  AL  L  M   G+  N  I   + +   +   + +A  + E  
Sbjct: 194 TYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDM 253

Query: 576 VESAAKVDLVLYTSVLAH 593
           V +  K D+V+Y ++L H
Sbjct: 254 VSAGLKPDIVIY-NILVH 270



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 114/259 (44%), Gaps = 3/259 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P  E Y  + D   +  +    L +FD +     + G+    +YN ++  LAKA ++E 
Sbjct: 294 LPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVV---SYNSLLSGLAKARQMEN 350

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++L +    + +SY  L   +   G   KAF +++ M+K   ++D   Y  ++ 
Sbjct: 351 ARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLK 410

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  KSG +  A ++FQ++ +   + +   + +++D   + G L  +  +  +MQ  G   
Sbjct: 411 ACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHL 470

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y S I++  ++G  +        MR      N   +T +I     +   D A+S +
Sbjct: 471 DTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCY 530

Query: 434 TDMERAGFLPTPSTYSCLL 452
              + +G     +  +CLL
Sbjct: 531 EQAKASGLQLDSALSNCLL 549



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/331 (18%), Positives = 133/331 (40%), Gaps = 38/331 (11%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y M+ D      DF     ++++MV    K  I +   YN ++    KA +++ +
Sbjct: 225 PNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVI---YNILVHAFCKAGRMDKA 281

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE-------------------- 294
               + +  +      ++Y  ++  ++  G   KA E+++                    
Sbjct: 282 LGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSG 341

Query: 295 -----SMEKGECSLDG----------STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
                 ME     L+            +Y  +    A++G ++ A  +FQ MK+ N    
Sbjct: 342 LAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAID 401

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              + +L+ +  K+G +  + +V+ ++   G + +   Y ++++ +A+ G+L  A  L +
Sbjct: 402 IVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLN 461

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           +M+  GF  +   +T  I++  +SG  +        M          TY+ L+    ++ 
Sbjct: 462 DMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAA 521

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
             D A+  Y    ++GL+   +    LL+ L
Sbjct: 522 DPDQAISCYEQAKASGLQLDSALSNCLLSGL 552


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 170/359 (47%), Gaps = 1/359 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           VI  L    +   +   F+++ D+  K  T++YN L+  ++  GL   A  +   ME+  
Sbjct: 311 VIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSG 370

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            S +  TY  +I +   +GR ++A  + +EM+  N +P+  +F+ ++ S    G    S 
Sbjct: 371 VSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSF 430

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +V  EM+  G RP    Y  +I+++ K   LD A+  +D M   G  P+   +  +I+ H
Sbjct: 431 QVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCH 490

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            ++GK D A  +F +M   G+ P  +T++ ++       + D    L   M S GL P  
Sbjct: 491 CRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNS 550

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRF 539
            TYT L+ +  K    + A + L +MK  G     +  + L+  Y + G  + A+   R 
Sbjct: 551 VTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRA 610

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
           M   G++ +   +  L  +  ++     A  +L+   E+  K D+V YT+++  L+R +
Sbjct: 611 MRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVE 669



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 153/331 (46%), Gaps = 1/331 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I   AKA  L  +      V  S   + T +   ++    N G   +A  I+E M  
Sbjct: 274 NDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRD 333

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                    Y  ++    K+G L  A  +  EM+     P+   ++ L+D+ G AGR ++
Sbjct: 334 NGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWES 393

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  V  EM+    +P+A ++  ++ SY   G+   + ++  EM  +G RP+   + ++I+
Sbjct: 394 ARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMID 453

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +  K   LD AM+ F  M   G  P   T++ L++ H  +G+ D A +L+  M   G  P
Sbjct: 454 TFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSP 513

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL 537
             +T+  ++     ++  D    +L  M++ G   + V+ + ++ +Y K G  + A+  L
Sbjct: 514 CNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECL 573

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
             M ++G++ ++ +   L  +  +  L E A
Sbjct: 574 DDMKAAGLKPSSTMYNALINAYAQRGLSEQA 604



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 147/332 (44%), Gaps = 3/332 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P ++ Y  L D    +  ++    +  EM   + +    +FS   R++       + + S
Sbjct: 373 PNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFS---RILSSYRDKGEWQKS 429

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +   +++ +S  + D   YNV++  F        A   ++ M       D  T+  +I  
Sbjct: 430 FQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDC 489

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             ++G+ D A +LF+EM E  + P    F  +++S G   R D    +   M+  G  P+
Sbjct: 490 HCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPN 549

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           +  Y +LI+ Y K+G+ + A+   D+M+ AG +P+  ++  +I ++A+ G  + A+S F 
Sbjct: 550 SVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFR 609

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G  P+    + L+       +   A  +   M    L+P + TYT L+  L + +
Sbjct: 610 AMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVE 669

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYIK 526
             D    +  EM   G + D  A  +L   +K
Sbjct: 670 KFDKVPSVYEEMILSGCTPDRKARAMLRSALK 701



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 159/345 (46%), Gaps = 8/345 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  L +++KL  ++     +L     +   +YN L++         KA  +   M 
Sbjct: 171 YSILIHALGQSEKLYEAF-----LLSQRQNLTPLTYNALISACARNNDLEKALNLITRMR 225

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAI--KLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +     D   Y L+I SL +  R+D+AI  KL++E++         +   ++    KAG 
Sbjct: 226 QDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKAGD 285

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           L  +++    +QG G        V++I +    G+   A  +++EMR  G +P    +  
Sbjct: 286 LSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNA 345

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           ++  + K+G L  A  + ++MER+G  P   TYS L++ + ++G+ +SA  +   M ++ 
Sbjct: 346 LLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASN 405

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           ++P    ++ +L+    +     + ++L EM+  G   D    +V++  + K   +DHA+
Sbjct: 406 VQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAM 465

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
                M S GI  +      L +   +   ++ A+ L E  +E  
Sbjct: 466 ATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGG 510


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 178/418 (42%), Gaps = 5/418 (1%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           D   SL LF++ +RQ W  P +  Y ++  +L      D    +FDEM  +     + ++
Sbjct: 115 DWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVY 174

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF-EIYE 294
           +A   VI    +  +   S      +          +YN ++      GL ++    ++ 
Sbjct: 175 TA---VINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFA 231

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M       D  TY  ++ + A  G  D A  +F+ M E    P  N ++ LV + GK  
Sbjct: 232 EMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLN 291

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           RL+   ++  EM+  G+ P    Y  L+E+YA+ G +  A+ ++ +M+ AG   N   ++
Sbjct: 292 RLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYS 351

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           +++  + K G+ D    IF +M+ +   P   TY+ L+++    G     + L++ M   
Sbjct: 352 VLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEE 411

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHA 533
            + P + TY  L+    K  L + A KILL M   G      A + V+  + +    + A
Sbjct: 412 NVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEA 471

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           L     M   G             +  +  LY+ A+ +L    ES  K D+  +  V+
Sbjct: 472 LVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVI 529



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 146/334 (43%), Gaps = 4/334 (1%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
            D +  +FR    +S  VP    Y  L     +    + +  L  EM    S   +   +
Sbjct: 258 GDEAEMVFR-TMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREM---ESGGNLPDIT 313

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +++  A+   ++ +   F+++  + C  +  +Y+VL+ L+   G      +I+  M
Sbjct: 314 SYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEM 373

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +      D  TY ++I    + G     + LF +M E N  P+   +  L+ + GK G  
Sbjct: 374 KVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLY 433

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + K+ + M   G  PS+  Y  +IE++ +A   + AL +++ M   G  P    +   
Sbjct: 434 EDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSF 493

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I + A+ G    A +I + M  +G      +++ +++     GQ + A+K Y  M  A  
Sbjct: 494 IHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANC 553

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            P   T   +L++     LVD + +   E+K  G
Sbjct: 554 EPNELTLEVVLSVYCSAGLVDESEEQFQEIKASG 587



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 146/316 (46%), Gaps = 3/316 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y +L +   E       + +F +M    +   ++  + Y+ ++    K  + + 
Sbjct: 309 LPDITSYNVLLEAYAELGSIKEAMDVFRQM---QAAGCVANAATYSVLLNLYGKHGRYDD 365

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
               F ++  S+   D  +YN+L+ +F   G   +   ++  M +     +  TYE +I 
Sbjct: 366 VRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIF 425

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  K G  + A K+   M E+   PS   +  ++++ G+A   + ++ V+  M   G  P
Sbjct: 426 ACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNP 485

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y S I ++A+ G    A  +   M  +G + +   F  +I++  + G+ + A+  +
Sbjct: 486 TVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSY 545

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +ME+A   P   T   +L ++ S+G VD + + +  + ++G+ P +  Y  +L L AK 
Sbjct: 546 VEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKN 605

Query: 494 KLVDVAAKILLEMKTM 509
             ++ A  ++ EM TM
Sbjct: 606 DRLNDAYNLIDEMITM 621


>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 131/586 (22%), Positives = 251/586 (42%), Gaps = 55/586 (9%)

Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
           +LN  + +   LSLF  +  + + N +++++ YN +++ L +  + E+S    + ++++ 
Sbjct: 16  ILNTLKSWKVALSLFKWLQAEQNFN-LNIYT-YNVMLKVLRRGQQWELSQQIAEDMINAG 73

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
            + D  +Y+ L++          A   ++ M   +C  D  TY  MI    K G+ D A+
Sbjct: 74  IRPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAV 133

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            L++ +K+  ++P    + ++V   G+AG +  ++ ++ EM+G G +P + +Y  +I   
Sbjct: 134 ALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISCL 193

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            +AG++  AL+++ EM+ AG +PN    + ++E +++SGK+   + IF  M R       
Sbjct: 194 GRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHM-RQDLACDI 252

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
             Y+ +++M   +G V  A +    M   G +P   TY  +++L AK  +   A ++  +
Sbjct: 253 IVYNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQ 312

Query: 506 MKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
           +   GY  DV      M Y                              L +       Y
Sbjct: 313 LVEAGYQPDV------MSYTS----------------------------LLQGYGNAKDY 338

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLF 625
           E  + +L   V +    D  L+  +L  L  C  +     L + L          +  +F
Sbjct: 339 EKVQEILHEMVSANCAPDERLWCVILNLLDACDTDVEFEILRSCLRMCNPTMDNIVGHIF 398

Query: 626 TGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYEN 685
                 +  VL  + +    +  ++ E A +   N LL  +   G  N A  +  +   +
Sbjct: 399 -----EENLVLKKLGDGLQSLLSDMAEEAHKPICNSLLQLIWHKGDRNYAFKLLSLFCSS 453

Query: 686 KLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPT- 744
            ++   +     I WSL +++LS GAA  A++  L   R  +     +P R  + TG   
Sbjct: 454 GVY-TGLQTKSSIMWSLHLKSLSTGAAHCALLSWLSSVRYAIQEGQELPSRFMIETGVGN 512

Query: 745 --------LKIVIAQMLSSVESPFEVS---KVVLRAPGDSVMEWFK 779
                   L +VI+ +L    SPF      K  L A G  V +W +
Sbjct: 513 QLNADELRLVVVISSLLKEFTSPFIECVDRKDWLEASGVDVRQWLE 558



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 165/359 (45%), Gaps = 39/359 (10%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +   L  +     +LSLF+W + +  +      Y ++  VL   + ++    + ++M++ 
Sbjct: 13  VVAILNTLKSWKVALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMINA 72

Query: 227 SSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
             + + I+    Y+ +I    + +  + +   F ++ D+ C  D  +Y+ ++ ++   G 
Sbjct: 73  GIRPDNIT----YSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGK 128

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +A  +YES++K     D  TY  M+    ++G + AA+ +F EMK    +P   ++  
Sbjct: 129 YDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNI 188

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA- 404
           ++  +G+AGR+  ++KV+ EM+  G +P+A    +++E Y+++GK+   L ++  MR   
Sbjct: 189 MISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQDL 248

Query: 405 ---------------------------------GFRPNFGLFTMIIESHAKSGKLDIAMS 431
                                            G +PN   +  +I  +AK+G    A  
Sbjct: 249 ACDIIVYNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQR 308

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           +F+ +  AG+ P   +Y+ LL+ + ++   +   ++ + M SA   P    +  +L LL
Sbjct: 309 MFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEILHEMVSANCAPDERLWCVILNLL 367


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 169/356 (47%), Gaps = 1/356 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           VI  L    + E +   F+++ D+  +  T++YN L+  ++  GL   A  +   ME+  
Sbjct: 312 VIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSG 371

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              +  TY L+I +   + R ++A  + +EM+  N +P+  +F+ ++ S    G    + 
Sbjct: 372 VLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTF 431

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +V  EM+  G RP    Y  LI+++ K   LD A+  +D M   G  P+   +  +++ H
Sbjct: 432 QVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCH 491

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K+GK D A  +F +M   G+LP  +T++ ++       + D    L  +M S GL P  
Sbjct: 492 CKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNA 551

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRF 539
            TYT L+ +  K    D A + L +MK  G     +  + L+  Y + G  D A+     
Sbjct: 552 VTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWA 611

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           M   G++ +   +  L  +  K+     A  +L+   E+  K D+V YT+++  L+
Sbjct: 612 MRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALI 667



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 3/337 (0%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +S  +P ++ Y +L D    +  ++    +  EM   + +    +FS   R++       
Sbjct: 369 RSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFS---RILASYRDKG 425

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           + + ++   +++ DS  + D   YNVL+  F        A   ++ M       D  T+ 
Sbjct: 426 EWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWN 485

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++    K+G+ D A +LF+EM E+ + P    F  +++S G   R D    +   M+  
Sbjct: 486 TLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQ 545

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+A  Y +LI+ Y K+G+ D A+   D+M+ AG +P+  ++  ++ ++A+ G  D A
Sbjct: 546 GLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQA 605

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           +S F  M   G  P+    + L+       +   A  +   M    L+P + TYT L+  
Sbjct: 606 VSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKA 665

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK 526
           L   +  D    +  EM   G + D  A  +L   +K
Sbjct: 666 LILVEKFDKVPSVYEEMILSGCTPDRKARAMLRSALK 702



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 178/407 (43%), Gaps = 41/407 (10%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC--C 257
           Y  L      + D +  L+L   M  D   + +     Y+ +I+ L K ++   S     
Sbjct: 202 YNALISACARNNDIEKALNLICRMREDGYPSDLV---NYSLIIRSLMKNNRANSSILQKI 258

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           ++++     ++D Q +N ++  F   G   KA E    ++    S+  +T   +I  L  
Sbjct: 259 YREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGN 318

Query: 318 SGRLDAAIKLFQEMKERNFRP---SFN--------------------------------I 342
            GR + A  +F+EM++   +P   ++N                                 
Sbjct: 319 CGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQT 378

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           ++ L+D+ G A R +++  V  EM+    +P+A ++  ++ SY   G+     ++  EM 
Sbjct: 379 YSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREME 438

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
            +G RP+   + ++I++  K   LD AM+ F  M   G  P   T++ L++ H  +G+ D
Sbjct: 439 DSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHD 498

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVL 521
            A +L+  M   G  P  +T+  ++     ++  D    +L  M++ G   + V+ + ++
Sbjct: 499 RAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLI 558

Query: 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
            +Y K G  D A+  L  M ++G++ ++ +   L  +  +  L + A
Sbjct: 559 DIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQA 605



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 152/345 (44%), Gaps = 41/345 (11%)

Query: 272 SYNVLMTLFLNK-GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           SY +L ++ ++  G   K +E +   +K   +L   TY  +I + A++  ++ A+ L   
Sbjct: 167 SYELLYSILIHALGQSEKLYEAFLLSQKQ--NLTPLTYNALISACARNNDIEKALNLICR 224

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSM--KVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           M+E  +      ++ ++ S+ K  R ++S+  K+Y E+          ++  +I  +AKA
Sbjct: 225 MREDGYPSDLVNYSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKA 284

Query: 389 GKLDTALR-----------------------------------LWDEMRIAGFRPNFGLF 413
           G LD AL                                    +++EMR  G +P    +
Sbjct: 285 GDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAY 344

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             ++  + K+G L  A  + ++MER+G LP   TYS L++ + ++ + +SA  +   M +
Sbjct: 345 NALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEA 404

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDH 532
           + ++P    ++ +L     +       ++L EM+  G   D    +VL+  + K   +DH
Sbjct: 405 SNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDH 464

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           A+     M S GI  +      L +   K   ++ A+ L E  +E
Sbjct: 465 AMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMME 509


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 173/385 (44%), Gaps = 15/385 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D  ++  D+   L +F EM+    S + I+    +N +I    +A++ E     F
Sbjct: 193 YNAVIDACSKGGDYPTALRIFREMLEQGMSPDRIT----FNTLISAAGRANRWEECDRIF 248

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLA 316
            ++ +     D  +YN L+  +   G  +    + E+M K    ++ S  TY  MI   A
Sbjct: 249 AEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSS-GIEPSVITYSTMIDGYA 307

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           K G    AI LFQEM+ +N  P    + ++VD   + G  D +  +   M+  G      
Sbjct: 308 KLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIV 367

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +L++SY K GK   A+ L +EM+  G  PN   ++ +I+++ K G    AM++F D+
Sbjct: 368 TYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDV 427

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK---- 492
           ++AG  P    YS L++    +G  D A+ L   M   G+RP + TY +LL    +    
Sbjct: 428 KKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLM 487

Query: 493 -RKLVDVAAKILLEMKTM--GYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549
            RK        LL   TM    SVD     ++    K   V  A R  R M  +G++ N 
Sbjct: 488 VRKNFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNV 547

Query: 550 FIVRQLFESCMKNALYESAKPLLET 574
                +  +C   A  E A  LLE 
Sbjct: 548 VTFSSILNACSHCASVEDASSLLEA 572



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 158/683 (23%), Positives = 263/683 (38%), Gaps = 126/683 (18%)

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV----IQYLAKADKLEMSYCCFKKVL 262
           L  S  ++ ++  FD MV   +     L S +++V    I  L +  + + +   F + +
Sbjct: 94  LGHSGQWEKVVKSFDWMVLQQN-----LRSQWDKVTSTIISSLGRLGRSDWAQLIFDRAV 148

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
            +    +   Y+ L+  +   G   KA EI+E+M K  C  +   Y  +I + +K G   
Sbjct: 149 GAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAM-KVVCKPNLVVYNAVIDACSKGGDYP 207

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ--------------- 367
            A+++F+EM E+   P    F +L+ + G+A R +   +++ EM+               
Sbjct: 208 TALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLI 267

Query: 368 ---------------------GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
                                  G  PS   Y ++I+ YAK G    A+ L+ EMR    
Sbjct: 268 ATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNV 327

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P+   +  +++ HA+ G  D A SI   ME AGF     TY+ LL+ +   G+   AM 
Sbjct: 328 EPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMS 387

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYI 525
           L   M   G  P + TY+AL+    K      A  +  ++K  G   DV     L+    
Sbjct: 388 LLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCC 447

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES----CM--------------------- 560
           K+GS D AL  L  M  +GIR N      L ++    C+                     
Sbjct: 448 KNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKNFPKLRFFLLPRVTMLL 507

Query: 561 ----------------KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
                           K AL  +A  +     ++  K ++V ++S+L     C   ++  
Sbjct: 508 KPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDAS 567

Query: 605 HLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLN 664
            L+  +     + +    GL  G   R   V       F+ +   L    A  F N L +
Sbjct: 568 SLLEAMRVFDGRVYGVTHGLLMGFRIR---VWRDAETLFNELT-TLGHNTAVAFYNALTD 623

Query: 665 YLVLMGQINRA--RCVWKVAY---ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHT 719
            L    Q   A  R VW  A+   E + F             LD+  +SVG+A  A++H 
Sbjct: 624 VLWHFEQAKAAKDRHVWDKAWWHSEQQFF-------------LDLHFMSVGSAQ-AMLHL 669

Query: 720 LHRFRKRMLYY--GVVPRRIKLVTG----------PTLKIVIAQMLSSVESPFEV---SK 764
              + ++ L     V+P+ + ++TG            +K  +   L  + SPF V   ++
Sbjct: 670 WLLYIRKFLCQRRSVLPKYMSILTGWGKHSKVPGESAVKRAVEAHLLEMNSPFHVWGNNE 729

Query: 765 VVLRAPGDSVMEWFKKPIVQQFL 787
             L   G  V  W      Q+ L
Sbjct: 730 GRLVCAGYQVQGWLMDTRTQRHL 752


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 177/403 (43%), Gaps = 4/403 (0%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +   F WA +Q  Y+   ECYV L DVL+ S DFD +  +F E      K  +    A
Sbjct: 136 DIAFRFFWWAGKQKNYIHKIECYVSLIDVLSLSSDFDRVRCIFGEF---KEKGFLMTVFA 192

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            N +I+       +E     ++++ +S  +    ++N L+   +N      A  ++E ME
Sbjct: 193 ANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVME 252

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            G+   D  +Y  MI    K+G    A++ F +M++RN  P    + +L+ +    G  D
Sbjct: 253 CGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFD 312

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           + + +Y EM+  G       Y  +I    K G+      +++ M   G + N  ++T +I
Sbjct: 313 SCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALI 372

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +++ K+G ++ A+++F  M+  GF P   TY  ++     SG++D A++ +       + 
Sbjct: 373 DAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVA 432

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
                Y++L+  L K   VD A K   EM   G   D    + L+    K G ++ AL  
Sbjct: 433 VNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVL 492

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
            + M   G     +    L     K    E A  L +  ++  
Sbjct: 493 FKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKG 535



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 185/406 (45%), Gaps = 18/406 (4%)

Query: 134 AVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWY 193
           +  ++ EV+   K GP++ +    ++   K  +  +A++   D +         KR    
Sbjct: 243 SAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDME---------KRN--L 291

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLE 252
            P    Y+ L        +FD  L L+ EM     + G+ +   AY+ VI  L K  +  
Sbjct: 292 EPDKITYLTLIQACYSEGNFDSCLHLYQEM----EERGLEIPPHAYSLVIGGLCKDGRTV 347

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
                F+ +    CK +   Y  L+  +   G   +A  ++E M+      D  TY +++
Sbjct: 348 EGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIV 407

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L KSGRLD A++ F+  K+     +   ++SL+D +GKAGR+D + K + EM   G  
Sbjct: 408 NGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCP 467

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
             +  Y +LI++ AK+GK++ AL L+  M   G       +T++I    K  + + A+ +
Sbjct: 468 QDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKL 527

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           +  M   G  PT +++  L      SG+V  A K+ + +   G+ P  + +  ++ +L K
Sbjct: 528 WDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAPMGVIPE-TAFEDMINVLCK 586

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
               + A K+   +   G  V      +L+  + K G+ D A++ +
Sbjct: 587 AGRTEQACKLADGIVDRGREVPGRVRTILINALRKAGNADLAMKLM 632



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 166/362 (45%), Gaps = 8/362 (2%)

Query: 153 TQLDKLQFVP-KMVHIT--QALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE 209
           T ++K    P K+ ++T  QA     + D+ L L++  + +   +P     +++  +  +
Sbjct: 284 TDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKD 343

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            R  +G  S+F+ M     K  +++++A   +I    K   +  +   F+++     + D
Sbjct: 344 GRTVEGS-SVFENMNKKGCKANVAIYTA---LIDAYGKNGNVNEAINLFERMKGEGFEPD 399

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             +Y V++      G   +A E +E  +  E +++   Y  +I  L K+GR+D A K F+
Sbjct: 400 DVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFE 459

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EM ER        + +L+D++ K+G+++ ++ ++  M+  G   +   Y  LI    K  
Sbjct: 460 EMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEH 519

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           + + AL+LWD M   G  P    F  +      SGK+  A  I  ++   G +P  + + 
Sbjct: 520 RNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAPMGVIPE-TAFE 578

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            ++ +   +G+ + A KL + +   G        T L+  L K    D+A K++     +
Sbjct: 579 DMINVLCKAGRTEQACKLADGIVDRGREVPGRVRTILINALRKAGNADLAMKLMHSKIGI 638

Query: 510 GY 511
           GY
Sbjct: 639 GY 640


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 178/405 (43%), Gaps = 8/405 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKA 248
            S   P    Y  L   L  +  FD    LF +M    ++ G       YN +I    K 
Sbjct: 38  HSGVTPSTVAYTSLIHGLCMANSFDDARELFADM----NRRGCPPSPVTYNVIIDASCKR 93

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             LE +    KK+++     D  +YN +M      G   +A  ++  ME+  C+ +  ++
Sbjct: 94  GMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSH 153

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I  L +  ++D A ++F EM+ R+  P    +  L+D + KAG+L+ + K++  M  
Sbjct: 154 NTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLD 213

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  PSA  Y  +I     A  LD AL L+  MR  G RP+   F ++I++H K GK+D 
Sbjct: 214 SGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDE 273

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +   M   G +P   TYS L+    S  +VD A  L   M     +P + T   L+ 
Sbjct: 274 AFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIH 333

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT 547
            L K   +  A ++L  M + G S DV   + L+  + + G  + A   L  M + G+  
Sbjct: 334 GLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAP 393

Query: 548 NNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           N      L    C  N L E+   +      S    +L  YT+++
Sbjct: 394 NVVTYTALVSGLCKANRLPEACG-VFAQMKSSGCAPNLFTYTALI 437



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 174/377 (46%), Gaps = 1/377 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  LAKA KL  +   F+K+L S     T +Y  L+           A E++  M
Sbjct: 12  SYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C     TY ++I +  K G L+ A  L ++M E    P    + +++D + K+GR+
Sbjct: 72  NRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRV 131

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + ++ ++ EM+  G  P+   + ++I    +  K+D A +++ EM      P+   + ++
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGIL 191

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+  AK+GKL+ A  +F  M  +G  P+  TY+ ++     +  +D A++L+ SM S G 
Sbjct: 192 IDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGC 251

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALR 535
           RP   T+  L+    KR  +D A ++L  M   G+  DV     L+  +     VD A  
Sbjct: 252 RPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARH 311

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L  M     +        L     K    + A+ +L+  V S    D+V Y +++    
Sbjct: 312 LLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHC 371

Query: 596 RCQDEQNERHLMAILSA 612
           R    +  R L++ + A
Sbjct: 372 RAGQTERARELLSDMVA 388



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 162/358 (45%), Gaps = 7/358 (1%)

Query: 153 TQLDKLQFVP-KMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNES 210
            ++++L   P +  H T  L +   S    +   + + ++  +P D   Y +L D L ++
Sbjct: 139 NEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKA 198

Query: 211 RDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
              +    LF  M+     +GI+  +  YN VI  +  A  L+ +   FK +    C+  
Sbjct: 199 GKLNEAYKLFRRML----DSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPS 254

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             ++N+L+     +G   +AF + + M       D  TY  +I  L    R+D A  L +
Sbjct: 255 RFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           +M +R  +P+     +L+  + KAGR+  + +V   M   G  P    Y +L+  + +AG
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           + + A  L  +M   G  PN   +T ++    K+ +L  A  +F  M+ +G  P   TY+
Sbjct: 375 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYT 434

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
            L+    S+GQVD  +KL+  M  AG+ P    Y  L   L K      A +IL E +
Sbjct: 435 ALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR 492



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 140/303 (46%), Gaps = 1/303 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  LAKA KL  +Y  F+++LDS       +YNV++          +A E+++SM
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C     T+ ++I +  K G++D A +L + M +    P    +++L+  +    R+
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 306

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  +  +M     +P+     +LI    KAG++  A  + D M  +G  P+   +  +
Sbjct: 307 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTL 366

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  H ++G+ + A  + +DM   G  P   TY+ L+     + ++  A  ++  M S+G 
Sbjct: 367 VHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGC 426

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P L TYTAL+        VD   K+  EM   G S D      L   + K G    AL 
Sbjct: 427 APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALE 486

Query: 536 WLR 538
            LR
Sbjct: 487 ILR 489



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 188/436 (43%), Gaps = 25/436 (5%)

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +   S D  +Y ++I  LAK+G+L+ A  LFQ++      PS   + SL+  +  A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            D + +++ +M   G  PS   Y  +I++  K G L+ A  L  +M   G  P+   +  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++   KSG+++ A+ +F +MER G  P   +++ ++       ++D A ++++ M +  
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL-----MVYIKDGSV 530
           + P   +Y  L+  LAK   ++ A K+   M   G +      +V+     + Y    ++
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAY----TL 236

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D AL   + M S G R + F    L ++  K    + A  LL+   +     D+V Y+++
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTL 296

Query: 591 LAHLVRCQDEQNERHLMAILSATKHK-----AHAFLCGLFTGPEQRKQPVLSFVREFFHG 645
           ++ L       + RHL+  +   + K      +  + GL              ++E    
Sbjct: 297 ISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR---------IKEAREV 347

Query: 646 IDYELEEGAARYFV--NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLD 703
           +D  +  G +   V  N L++     GQ  RAR +        L P  + +   ++    
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407

Query: 704 VRNLSVGAALIAVMHT 719
              L     + A M +
Sbjct: 408 ANRLPEACGVFAQMKS 423



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 152/340 (44%), Gaps = 1/340 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D+ SY +L+      G    A ++++ +     +     Y  +I  L  +   D A +LF
Sbjct: 9   DSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELF 68

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +M  R   PS   +  ++D+  K G L+ +  +  +M   GH P    Y ++++   K+
Sbjct: 69  ADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKS 128

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+++ AL L++EM   G  PN      II    +  K+D A  +F +ME     P   +Y
Sbjct: 129 GRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSY 188

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             L++  A +G+++ A KL+  M  +G+ P   TY  ++  +     +D A ++   M++
Sbjct: 189 GILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRS 248

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G        ++L+  + K G +D A R L+ M   G   +      L       A  + 
Sbjct: 249 KGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDD 308

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           A+ LLE  V+   K  +V   +++  L +    +  R ++
Sbjct: 309 ARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL 348



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 137/335 (40%), Gaps = 22/335 (6%)

Query: 184 FRWAKRQS--WYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           FR  KR +   +VP    Y  L   L      D    L ++MV    K  +      N +
Sbjct: 275 FRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVV---TQNTL 331

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           I  L KA +++ +      ++ S    D  +YN L+      G   +A E+   M     
Sbjct: 332 IHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGL 391

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           + +  TY  ++  L K+ RL  A  +F +MK     P+   + +L+     AG++D  +K
Sbjct: 392 APNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLK 451

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG--LFTMIIES 419
           ++ EM   G  P   +Y +L     K+G+   AL +  E R +     +G  ++   ++ 
Sbjct: 452 LFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDG 511

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
              +GK+++A+    DM R G LP P   + L+     SGQ   A  +            
Sbjct: 512 LLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEE--------- 562

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
                 ++ L    K    AAK + EM   GY ++
Sbjct: 563 ------IMDLAYGGKARGKAAKFVEEMVGKGYEIE 591


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 194/454 (42%), Gaps = 26/454 (5%)

Query: 141 VVNRWKWGPELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSL 181
           VV + K+  ++ET ++KL  +P    I + L V                     D   SL
Sbjct: 68  VVEKGKYSYDVETLINKLSSLPPRGSIARCLDVFKNKLSLNDFALVFKEFAQRGDWQRSL 127

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNR 240
            LF+  +RQ W  P +  Y ++  +L      +    +F+EM  H  S+   S+FS Y  
Sbjct: 128 RLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSR---SVFS-YTA 183

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF-EIYESMEKG 299
           +I    +  K E+S    +++          +YN ++      GL ++    ++  M   
Sbjct: 184 LINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHE 243

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY  ++ + +  G  D A  +F+ M E    P    +  LVD+ GK  RLD  
Sbjct: 244 GIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKV 303

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            ++  EM   G+ P    Y  L+E+YA+ G ++ A  ++  M+ AG  PN   +++++  
Sbjct: 304 SELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGL 363

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G+ D    +F +M+ +   P  +TY+ L+++    G     + L++ M    + P 
Sbjct: 364 YGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPN 423

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLR 538
           + TY  L+    K  L D A KILL M   G      A + V+  Y +    + AL  L 
Sbjct: 424 METYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLN 483

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
            M   G +        L     +  LY+  + +L
Sbjct: 484 TMNEMGSKPTIETYNTLIYMFARGGLYKETEAIL 517



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 155/350 (44%), Gaps = 38/350 (10%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  L D   +    D +  L  EM   +S   +   S+YN +++  A+   +E 
Sbjct: 281 VPDITTYTYLVDTFGKLNRLDKVSELLKEM---ASTGNVPEISSYNVLLEAYARIGNIED 337

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F+ + ++ C  + ++Y++L+ L+   G   +  E++  M+      D +TY  +I 
Sbjct: 338 ATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLID 397

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              + G     + LF +M E N  P+   +  L+ + GK G  D + K+ + M   G  P
Sbjct: 398 VFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIP 457

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP------------------------- 408
           S+  Y  +IE+Y +A   + AL   + M   G +P                         
Sbjct: 458 SSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAIL 517

Query: 409 ----NFGL------FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
               +FG+      F  +IE   + G+ + A+  + +ME++  +P   T   +L ++  +
Sbjct: 518 LKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIA 577

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           G VD +++ +  + ++G+ P +  Y  +L + AK    + A ++L EM T
Sbjct: 578 GLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELLDEMLT 627



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 151/329 (45%), Gaps = 4/329 (1%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           CK +   Y ++++L   +GL  K  +I+E M     S    +Y  +I S  ++G+ + ++
Sbjct: 139 CKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSL 198

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS--MKVYMEMQGCGHRPSAPMYVSLIE 383
           +L + MK+    PS   + ++++S  + G LD    + ++ EM+  G +P    Y +L+ 
Sbjct: 199 ELLERMKKERVSPSILTYNTVINSCARGG-LDWEGLLGLFAEMRHEGIQPDIVTYNTLLC 257

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           + +  G  D A  ++  M   G  P+   +T ++++  K  +LD    +  +M   G +P
Sbjct: 258 ACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVP 317

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
             S+Y+ LLE +A  G ++ A  ++  M  AG  P   TY+ LL L  K    D   ++ 
Sbjct: 318 EISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELF 377

Query: 504 LEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
           LEMK      D +  + L+ V+ + G     +     M    +  N      L  +C K 
Sbjct: 378 LEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKG 437

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVL 591
            L++ AK +L    E         YT V+
Sbjct: 438 GLHDDAKKILLHMSEKGMIPSSKAYTGVI 466


>gi|224075802|ref|XP_002304774.1| predicted protein [Populus trichocarpa]
 gi|222842206|gb|EEE79753.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 176/372 (47%), Gaps = 6/372 (1%)

Query: 143 NRWKWGPELETQLDKLQFV-PKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYV 201
           NR +WGPE+ T+L KL+ V P +V   + LKV N+   +   F WA +Q  +      Y 
Sbjct: 107 NRNQWGPEVVTELCKLRRVTPDLV--AEVLKVENNPQLATKFFHWAGKQKGFKHTFASYN 164

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
                LN S  F     L  E++    K        +  +I+  + A++    Y  ++K+
Sbjct: 165 AFAYNLNRSNFFRAADQL-PELMEAQGKPPTE--KQFEILIRMHSDANRGLRVYYVYQKM 221

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           +    K     YN +M   +  G    A  +YE   +     +  TY ++I  L K+GR+
Sbjct: 222 VKFGVKPRVFLYNRIMDSLIKTGHLDLALSVYEDFRRDGLVEESVTYMILIKGLCKAGRI 281

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           +  +++   M+E   +P    + ++V ++   G LD  ++V+ EM+  G  P    YV+L
Sbjct: 282 EEMMEVLGRMRENLCKPDVFAYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMAYVTL 341

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           + +  K G++D    ++ EM+      + G++ +++E+    GK+ +A  +  D+  +G+
Sbjct: 342 VTALCKGGRVDKGYEVFKEMKGRRILIDRGIYGILVEAFVADGKIGLACDLLKDLVDSGY 401

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
                 Y+ L+E   +  +VD A KL+      GL     T   LL   A+ K +D   K
Sbjct: 402 RADLRIYNSLIEGFCNVKRVDKAHKLFQVTVQEGLERDFKTVNPLLMSYAEMKKMDDFCK 461

Query: 502 ILLEMKTMGYSV 513
           +L +M+ +G+SV
Sbjct: 462 LLKQMEKLGFSV 473



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 133/293 (45%), Gaps = 2/293 (0%)

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQ-EMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
           C L   T +L+   L        A K F    K++ F+ +F  + +   ++ ++     +
Sbjct: 120 CKLRRVTPDLVAEVLKVENNPQLATKFFHWAGKQKGFKHTFASYNAFAYNLNRSNFFRAA 179

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            ++   M+  G  P+   +  LI  ++ A +      ++ +M   G +P   L+  I++S
Sbjct: 180 DQLPELMEAQGKPPTEKQFEILIRMHSDANRGLRVYYVYQKMVKFGVKPRVFLYNRIMDS 239

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K+G LD+A+S++ D  R G +    TY  L++    +G+++  M++   M     +P 
Sbjct: 240 LIKTGHLDLALSVYEDFRRDGLVEESVTYMILIKGLCKAGRIEEMMEVLGRMRENLCKPD 299

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
           +  YTA++  LA    +D   ++  EMK  G   DV A   L+  + K G VD      +
Sbjct: 300 VFAYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMAYVTLVTALCKGGRVDKGYEVFK 359

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            M    I  +  I   L E+ + +     A  LL+  V+S  + DL +Y S++
Sbjct: 360 EMKGRRILIDRGIYGILVEAFVADGKIGLACDLLKDLVDSGYRADLRIYNSLI 412



 Score = 89.4 bits (220), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 122/280 (43%), Gaps = 1/280 (0%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           ++Y     +L +S    AA +L + M+ +   P+   F  L+     A R      VY +
Sbjct: 161 ASYNAFAYNLNRSNFFRAADQLPELMEAQGKPPTEKQFEILIRMHSDANRGLRVYYVYQK 220

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G +P   +Y  +++S  K G LD AL ++++ R  G       + ++I+   K+G+
Sbjct: 221 MVKFGVKPRVFLYNRIMDSLIKTGHLDLALSVYEDFRRDGLVEESVTYMILIKGLCKAGR 280

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           ++  M +   M      P    Y+ ++   A  G +D+ ++++  M   G+ P +  Y  
Sbjct: 281 IEEMMEVLGRMRENLCKPDVFAYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMAYVT 340

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG 544
           L+T L K   VD   ++  EMK     +D     +L+  ++ DG +  A   L+ +  SG
Sbjct: 341 LVTALCKGGRVDKGYEVFKEMKGRRILIDRGIYGILVEAFVADGKIGLACDLLKDLVDSG 400

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
            R +  I   L E        + A  L +  V+   + D 
Sbjct: 401 YRADLRIYNSLIEGFCNVKRVDKAHKLFQVTVQEGLERDF 440



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 85/427 (19%), Positives = 165/427 (38%), Gaps = 79/427 (18%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R++   P    Y  +   L    + D  L +++EM  D  +  +    AY  ++  L K 
Sbjct: 292 RENLCKPDVFAYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVM---AYVTLVTALCKG 348

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            +++  Y  FK++      ID   Y +L+  F+  G    A ++ + +       D   Y
Sbjct: 349 GRVDKGYEVFKEMKGRRILIDRGIYGILVEAFVADGKIGLACDLLKDLVDSGYRADLRIY 408

Query: 309 ELMIPSLAKSGRLDAAIKLFQ----EMKERNFRP-------------------------- 338
             +I       R+D A KLFQ    E  ER+F+                           
Sbjct: 409 NSLIEGFCNVKRVDKAHKLFQVTVQEGLERDFKTVNPLLMSYAEMKKMDDFCKLLKQMEK 468

Query: 339 -SFNIFASLVD----SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
             F++F  L       +GK  R   +++V+ +++  G+  S P+Y  L+E+    G++  
Sbjct: 469 LGFSVFDDLSKFFSYVVGKPERTMMALEVFEDLKVKGYS-SVPIYNILMEALLTIGEMKR 527

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           AL L+ EM+    +P+   +++ I    + G +  A      +     +P+ + Y  L +
Sbjct: 528 ALSLFGEMKDLN-KPDSTTYSIAIICFVEDGNIQEACVSHNKIVEMFCVPSVAAYCSLAK 586

Query: 454 MHASSGQVDSAMKLY------------------------------------NSMTSAGLR 477
               +G++D+AM L                                     N M   G  
Sbjct: 587 GLCDNGEIDAAMMLVRDCLASVESGPMEFKYSLTILHACKTGGAEKVIDVLNEMMQEGCT 646

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEM---KTMGYSVDVSASDVLMVYIKDGSVDHAL 534
           P    Y+A+++ + K    + A K+  ++   K +  +  +   ++L+ ++K  + D  L
Sbjct: 647 PNEVIYSAIISGMCKHGTFEEARKVFTDLRQRKILTEAKTIVFDEILIEHMKKKTADLVL 706

Query: 535 RWLRFMG 541
             L+F G
Sbjct: 707 AGLKFFG 713


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/500 (22%), Positives = 228/500 (45%), Gaps = 24/500 (4%)

Query: 111 SVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQA 170
           S +P    H  V   ++PF   + V+++  +++R +W  +  ++L +L    K  H+ + 
Sbjct: 26  SSKPHISSHFAVPASREPF--QAIVSRVCAILSRVQW--KGSSELKQLSPQLKAHHVAEI 81

Query: 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF---DGMLSLFDEMVHDS 227
           + V  D+++ +  F W  ++ +Y     C++ + + L   R F   D +  L  +   + 
Sbjct: 82  VAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNE 141

Query: 228 SKN---------------GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            +                G SL+S    +IQ LAK + +E +   +K++L+S  +    +
Sbjct: 142 EEIRRVADFLNEISGMGFGFSLYSCNTLLIQ-LAKFEMVEGARNLYKQMLNSGIQPSLLT 200

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +N L+ +   KG   +A  I   + + + S D  TY  +I    ++  LD A  +F  M 
Sbjct: 201 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV 260

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +    P+   +++L++ +   GR+D ++ +  EM   G  P+   Y   I +       +
Sbjct: 261 KEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 320

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A+ L   M+  G RPN   +T +I   ++ GKL++A+ ++  M + G +P   TY+ L+
Sbjct: 321 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 380

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-Y 511
                 G+  +A+K+++ M   G      TY  ++  L     ++ A  +  +M  MG  
Sbjct: 381 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 440

Query: 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
              V+ + ++  Y+  G+V++A R L  M  +G   + +   +L     K    ESA   
Sbjct: 441 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 500

Query: 572 LETYVESAAKVDLVLYTSVL 591
            +  VE     + V YT+++
Sbjct: 501 FQEMVECGLNPNPVSYTALI 520



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 181/397 (45%), Gaps = 16/397 (4%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  L++  KLE++   + K+L      +T +YN L+      G    A +I+  M
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWM 399

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      +  TY  +I  L   G ++ A+ LF++M +    P+   + +L++     G +
Sbjct: 400 EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNV 459

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + ++   M+  G  P    Y  L+  ++K GKL++A   + EM   G  PN   +T +
Sbjct: 460 NNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTAL 519

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ H+K GK+DIA+S+   ME  G  P   +Y+ ++   +   +   A K+ + M   GL
Sbjct: 520 IDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGL 579

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
            P + TYT L+  L +      A KI  +M+      ++ + S ++    ++G  D A R
Sbjct: 580 LPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAER 639

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
                    + T + +V  L   C K   YE A+ L++   E     D  +Y S+L  + 
Sbjct: 640 MSEIGCEPTLDTYSTLVSGL---CRKGRFYE-AEQLVKDMKERGFCPDREIYYSLL--IA 693

Query: 596 RCQDEQNERHLMAILSATKHKA--------HAFLCGL 624
            C++ + + H + I  + + K          A +C L
Sbjct: 694 HCKNLEVD-HALKIFHSIEAKGFQLHLSIYRALICAL 729



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 145/313 (46%), Gaps = 5/313 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++   +K  KLE +   F+++++     +  SY  L+      G    A  + + M
Sbjct: 480 TYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRM 539

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+  C+ +  +Y  +I  L+K  R   A K+  +M E+   P+   + +L+D + + GR 
Sbjct: 540 EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRT 599

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + K++ +M+     P+   Y SLI    + GK D A R+ +     G  P    ++ +
Sbjct: 600 QFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAERMSE----IGCEPTLDTYSTL 655

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    + G+   A  +  DM+  GF P    Y  LL  H  + +VD A+K+++S+ + G 
Sbjct: 656 VSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGF 715

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +  LS Y AL+  L K   V+ A  +   M    ++ D     VL+   +K+G +D  ++
Sbjct: 716 QLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMK 775

Query: 536 WLRFMGSSGIRTN 548
            L  M S     N
Sbjct: 776 LLHIMESKNFTPN 788



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 149/337 (44%), Gaps = 40/337 (11%)

Query: 210 SRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           +R+ D    +FD MV +    N ++    Y+ +I  L    +++ +    +++++   + 
Sbjct: 246 NRNLDLAFGVFDRMVKEGCDPNSVT----YSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
              +Y + +T         +A E+   M+K  C  +  TY  +I  L++ G+L+ AI L+
Sbjct: 302 TVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLY 361

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG-----------------C-- 369
            +M +    P+   + +L++ +   GR  T++K++  M+G                 C  
Sbjct: 362 HKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLG 421

Query: 370 ----------------GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
                           G  P+   Y +LI  Y   G ++ A RL D M+  G  P+   +
Sbjct: 422 GDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTY 481

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             ++   +K GKL+ A   F +M   G  P P +Y+ L++ H+  G+VD A+ L   M  
Sbjct: 482 NELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEE 541

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            G  P + +Y A++  L+K      A KI  +M   G
Sbjct: 542 MGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQG 578



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 140/285 (49%), Gaps = 4/285 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I   +K  K++++    K++ +  C  + +SYN ++     +    +A +I + M
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     +  TY  +I  L ++GR   A K+F +M++R   P+   ++SL+  + + G+ 
Sbjct: 575 VEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKA 634

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + +    M   G  P+   Y +L+    + G+   A +L  +M+  GF P+  ++  +
Sbjct: 635 DEAER----MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSL 690

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + +H K+ ++D A+ IF  +E  GF    S Y  L+     +GQV+ A  L+++M     
Sbjct: 691 LIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEW 750

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
                 +T L+  L K   +D+  K+L  M++  ++ ++    +L
Sbjct: 751 NADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 795



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L D  ++    D  LSL   M        +    +YN VI  L+K ++   +
Sbjct: 511 PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVE---SYNAVINGLSKENRFSEA 567

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                K+++     +  +Y  L+      G    AF+I+  MEK +C  +  TY  +I  
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L + G+ D A    + M E    P+ + +++LV  + + GR   + ++  +M+  G  P 
Sbjct: 628 LCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPD 683

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
             +Y SL+ ++ K  ++D AL+++  +   GF+ +  ++  +I +  K+G+++ A ++F 
Sbjct: 684 REIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFD 743

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           +M    +      ++ L++     G++D  MKL + M S    P + TY  L
Sbjct: 744 NMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 795



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 126/274 (45%), Gaps = 8/274 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +LSL +  +      P  E Y  + + L++   F     + D+MV       +     
Sbjct: 530 DIALSLLKRMEEMGCN-PNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVI---T 585

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I  L +  + + ++  F  +    C  +  +Y+ L+     +G   +A    E M 
Sbjct: 586 YTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA----ERMS 641

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C     TY  ++  L + GR   A +L ++MKER F P   I+ SL+ +  K   +D
Sbjct: 642 EIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVD 701

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++K++  ++  G +    +Y +LI +  KAG+++ A  L+D M    +  +  ++T+++
Sbjct: 702 HALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLV 761

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           +   K G+LD+ M +   ME   F P   TY  L
Sbjct: 762 DGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 795



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 90/181 (49%), Gaps = 9/181 (4%)

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLD 304
            KAD+ E       ++ +  C+    +Y+ L++    KG  Y+A ++ + M E+G C  D
Sbjct: 632 GKADEAE-------RMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCP-D 683

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
              Y  ++ +  K+  +D A+K+F  ++ + F+   +I+ +L+ ++ KAG+++ +  ++ 
Sbjct: 684 REIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFD 743

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
            M          ++  L++   K G+LD  ++L   M    F PN   + ++    ++ G
Sbjct: 744 NMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIG 803

Query: 425 K 425
           K
Sbjct: 804 K 804



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A +I+ S+E     L  S Y  +I +L K+G+++ A  LF  M E+ +     ++  LVD
Sbjct: 703 ALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVD 762

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            + K G LD  MK+   M+     P+   YV L    ++ GK   +  L D++++
Sbjct: 763 GLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLKV 817


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 201/437 (45%), Gaps = 15/437 (3%)

Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTSL-SLFRWAKRQSWYVPGDECYVMLFDV 206
           G  LE  LD+   VP    +       + S   L SLF WA ++S + P    +  L +V
Sbjct: 104 GAALEDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLWAAKKSGFRPSAALFNRLINV 163

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           L +SR+FD   SL    +    ++ +     +  +I+  A+A  ++ +     +  +  C
Sbjct: 164 LAKSREFDSAWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAI----RTYEFAC 219

Query: 267 KIDTQS-------YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLAK 317
            ++T S       + +L+     +G    A E +    +   S + S   Y ++I    +
Sbjct: 220 NLETISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILINGWFR 279

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           S +L  A +L+ EMK+    P+   + +L++   +   ++ ++++  EM+  G  P+A +
Sbjct: 280 SRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIV 339

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  ++++  +AG+   AL + +   +    P    +  +++ + K+G L  A  I   M 
Sbjct: 340 YNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMMI 399

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             GF PTP+TY+      +  G+++ +M LYN M  +G  P   TY  LL +L + + ++
Sbjct: 400 GRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLN 459

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
           +A ++  EMK  G+ +D++ S +LM +  K    + A      M   GI        +L 
Sbjct: 460 LAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLH 519

Query: 557 ESCMKNALYESAKPLLE 573
           +  MK  L + A  L E
Sbjct: 520 DEFMKRGLTKMASKLQE 536



 Score = 45.8 bits (107), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 60/141 (42%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + YN   ++ +K  K+E S   + K+++S    D  +Y++L+ +   +     A ++   
Sbjct: 408 TTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNE 467

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M+     +D +T  +++  L K  + + A   F+ M  R   P +  F  L D   K G 
Sbjct: 468 MKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMKRGL 527

Query: 356 LDTSMKVYMEMQGCGHRPSAP 376
              + K+   M    H    P
Sbjct: 528 TKMASKLQEMMSSVPHSEKLP 548


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 173/369 (46%), Gaps = 5/369 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D  +SLF+  +    Y       V++  +    R+ +GM  LF+EM   S +  +     
Sbjct: 301 DEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGM-DLFNEMRERSCEPNVH---T 356

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++  + K  KL+ S     ++++        +YN L+  +  +G    A EI   ME
Sbjct: 357 YTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLME 416

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  +  TY  +I   +K   +  A+ L  +M E    PS   + SL+    KAG  D
Sbjct: 417 SNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFD 476

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           ++ K+   ++  G  P    Y   I++  K+ +++ A  L++ ++  G + N  ++T +I
Sbjct: 477 SAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALI 536

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           + H K+GK+D A+S+   M     LP  STY+ L+      G+V   + +  +M+  G++
Sbjct: 537 DGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVK 596

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRW 536
           P ++TYT L+  + +    D A ++  +M + G+  DV + +  +  Y   G+V  A   
Sbjct: 597 PTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGM 656

Query: 537 LRFMGSSGI 545
           +  M  +G+
Sbjct: 657 MARMIEAGV 665



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 171/385 (44%), Gaps = 1/385 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    + + +  +Y  F  + +  C+ +  SY  ++      G   +   +++ M
Sbjct: 251 TYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKM 310

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            + +C     TY ++I +L  + R    + LF EM+ER+  P+ + +  +VD+M K  +L
Sbjct: 311 REDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKL 370

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D S ++  EM   G  PS   Y +LI  Y + G+++ AL +   M     RPN   +  +
Sbjct: 371 DESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNEL 430

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I   +K   +  AM++ + M  +   P+  TY+ L+ +   +G  DSA KL + +   GL
Sbjct: 431 ICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGL 490

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALR 535
            P   TY+  +  L K K ++ A  +   +K  G    +V  + ++  + K G +D A+ 
Sbjct: 491 VPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAIS 550

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L  M S     N+     L     K    +    ++E   +   K  +  YT ++  ++
Sbjct: 551 LLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEML 610

Query: 596 RCQDEQNERHLMAILSATKHKAHAF 620
           R  D  +   +   + +  HK   +
Sbjct: 611 REGDFDHANRVFNQMVSFGHKPDVY 635



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 174/392 (44%), Gaps = 36/392 (9%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L +A +++     FKK+ + DC    ++Y V++          +  +++  M
Sbjct: 286 SYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEM 345

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C  +  TY +M+ ++ K  +LD + ++  EM E+   PS   + +L+    + GR+
Sbjct: 346 RERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRI 405

Query: 357 DTSMKVYMEMQG--------------CG-------HR--------------PSAPMYVSL 381
           + ++++   M+               CG       H+              PS   Y SL
Sbjct: 406 EAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSL 465

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I    KAG  D+A +L D ++  G  P+   +++ I++  KS +++ A  +F  ++  G 
Sbjct: 466 IHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGI 525

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
                 Y+ L++ H  +G++D A+ L   M S    P  STY +L+  + K   V     
Sbjct: 526 KANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLS 585

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           ++  M  MG    V+   +L+   +++G  DHA R    M S G + + +       +  
Sbjct: 586 MVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYC 645

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
            +   + A+ ++   +E+    D + YT +++
Sbjct: 646 TSGNVKEAEGMMARMIEAGVMPDSLTYTLLIS 677



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 127/274 (46%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I   +K   +  +     K+L+S       +YN L+ +    G    A+++ + +
Sbjct: 426 TYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLL 485

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++     D  TY + I +L KS R++ A  LF  +KE+  + +  ++ +L+D   KAG++
Sbjct: 486 KENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKI 545

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ +   M      P++  Y SLI    K GK+   L + + M   G +P    +T++
Sbjct: 546 DEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTIL 605

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           IE   + G  D A  +F  M   G  P   TY+  +  + +SG V  A  +   M  AG+
Sbjct: 606 IEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGV 665

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            P   TYT L++   +  L   A  +L  M   G
Sbjct: 666 MPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAG 699



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 167/356 (46%), Gaps = 1/356 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN ++  LA+   ++     + ++L+     +  + N ++  +   G   +A      +
Sbjct: 181 SYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKI 240

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   S D  TY  +I    ++  +++A K+F  M  +  R +   + +++  + +AGR+
Sbjct: 241 FQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRI 300

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D  + ++ +M+     P+   Y  +I +     +    + L++EMR     PN   +T++
Sbjct: 301 DEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVM 360

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +++  K  KLD +  I  +M   G +P+  TY+ L+  +   G++++A+++   M S   
Sbjct: 361 VDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNC 420

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           RP   TY  L+   +KRK V  A  +L +M     +   V+ + ++ V  K G  D A +
Sbjct: 421 RPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYK 480

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            L  +  +G+  + +      ++  K+   E A  L  +  E   K + V+YT+++
Sbjct: 481 LLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALI 536



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 129/293 (44%), Gaps = 3/293 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y  L    ++ +     ++L  +M+   SK   SL + YN +I    KA   + +
Sbjct: 422 PNERTYNELICGFSKRKHVHKAMTLLSKML--ESKLTPSLVT-YNSLIHVQCKAGHFDSA 478

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           Y     + ++    D  +Y+V +          +A +++ S+++     +   Y  +I  
Sbjct: 479 YKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDG 538

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K+G++D AI L + M   +  P+ + + SL+  + K G++   + +   M   G +P+
Sbjct: 539 HCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPT 598

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LIE   + G  D A R++++M   G +P+   +T  I ++  SG +  A  +  
Sbjct: 599 VATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMA 658

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            M  AG +P   TY+ L+  +   G    A  +   M  AG  P    +  L+
Sbjct: 659 RMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 118/269 (43%), Gaps = 5/269 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKA 248
           +S   P    Y  L  V  ++  FD    L D +     +NG+      Y+  I  L K+
Sbjct: 452 ESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLL----KENGLVPDQWTYSVFIDTLCKS 507

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            ++E +   F  + +   K +   Y  L+      G   +A  + E M   +C  + STY
Sbjct: 508 KRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTY 567

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I  + K G++   + + + M +   +P+   +  L++ M + G  D + +V+ +M  
Sbjct: 568 NSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVS 627

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            GH+P    Y + I +Y  +G +  A  +   M  AG  P+   +T++I ++ + G    
Sbjct: 628 FGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYD 687

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           A ++   M  AG  P+   ++ L+   AS
Sbjct: 688 AFNVLKRMLDAGCDPSHPIWNNLIWYKAS 716


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 203/474 (42%), Gaps = 28/474 (5%)

Query: 141 VVNRWKWGPELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSL 181
           VV + K+  ++ET ++KL  +P    I + L++                     D   SL
Sbjct: 67  VVEKGKYSYDVETLINKLSSLPPRGSIARCLEIFKNKLSLNDFALVFKEFAQRGDWQRSL 126

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI--SLFSAYN 239
            LF++ +RQ W  P +  Y ++  +L      +G+L    E+  +   +G+  S+FS Y 
Sbjct: 127 RLFKYMQRQIWCKPNEHIYTIIISLLGR----EGLLEKSTEIFEEMPTHGVPRSVFS-YT 181

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA-FEIYESMEK 298
            +I    +  + E+S    +++          +YN ++      GL ++    ++  M  
Sbjct: 182 ALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRH 241

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY  ++ + A  G  D A  +F+ M E    P    + +LV++ GK  +L+ 
Sbjct: 242 EGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEK 301

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
             ++  EM+  G+ P    Y  L+E+YA  G +  A+ ++ +M+ A   PN   ++M++ 
Sbjct: 302 VSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLN 361

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
            +   G+ D    +F +M+ +   P   TY+ L+E+    G     + L++ M    + P
Sbjct: 362 LYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEP 421

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWL 537
            + TY  L+    K  L + A KILL M   G      A + V+  Y +  S + AL   
Sbjct: 422 NMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMF 481

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             M   G +        L     +  LY+ ++ ++    ES    D   +  V+
Sbjct: 482 NTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVI 535



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 145/317 (45%), Gaps = 3/317 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  L +   +    + +  L  EM  +SS N +   S+YN +++  A    +  
Sbjct: 280 VPDITTYRNLVETFGKLNKLEKVSELLKEM--ESSGN-LPDISSYNVLLEAYASKGDIRH 336

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F+++ ++ C  +  +Y++L+ L+   G      E++  M+      D  TY ++I 
Sbjct: 337 AMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIE 396

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              + G     + LF +M E N  P+   +  L+ + GK G  + + K+ + M   G  P
Sbjct: 397 VFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVP 456

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           S   Y  +IE+Y +A   + AL +++ M   G +P    +  +I   A+ G    + +I 
Sbjct: 457 STKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIM 516

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M  +G      +++ ++E +   GQ + A+K Y  +  A  +P   T+ A+L++    
Sbjct: 517 WKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTA 576

Query: 494 KLVDVAAKILLEMKTMG 510
            LVD + +   E++  G
Sbjct: 577 GLVDESEEQFREIRASG 593


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 147/666 (22%), Positives = 263/666 (39%), Gaps = 95/666 (14%)

Query: 141 VVNRWKWGPELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSL 181
            V + K+G E+E+ ++ L  +P    +T+ + +                    +D   +L
Sbjct: 7   TVEKGKYGYEIESCINSLSQLPPRGSVTRCMDLYRSKLTMQDFSLIFREFAARSDWHRAL 66

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI----SLFSA 237
            LF++ +RQ W  P +  Y ++  ++      +    +F++M  +  K  +    +L +A
Sbjct: 67  RLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINA 126

Query: 238 YNRVIQYLA--------KADKLEMSYCCFKKVLDSDCK---------------------I 268
           Y R  QY A        K +++E +   +  VL++  K                      
Sbjct: 127 YGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQP 186

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN L++   ++GL  +A  ++++M +     D  TY+ ++ + A S +L    +L 
Sbjct: 187 DLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELL 246

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM++    P    + SL+++   AG +  +  V+ +MQ  G  P    Y +L+  Y   
Sbjct: 247 REMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQ 306

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G  +    L+ +M+     P    +  +I+   + G    ++++F DM  +G  P  +TY
Sbjct: 307 GCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATY 366

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTS----------------------------------- 473
           S LL +    G    A K++  M +                                   
Sbjct: 367 SALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIRE 426

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDH 532
           AGL P +S Y AL+   AK  L   A   L  M   G+   VS+ + V+  Y K G  D 
Sbjct: 427 AGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDE 486

Query: 533 ALRWL-RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           AL +        G   +      L        L E AK       E++      +Y  +L
Sbjct: 487 ALEFFSELQQKEGSEVDERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLL 546

Query: 592 AHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDY-EL 650
           +  VR         L+  + A     H  + G+  G           V   F G+   ++
Sbjct: 547 SLCVRRSKWDYATQLLDEMIAAG-GLHQVVVGIVRGTYDADFS-WQVVEYAFDGLKLRDM 604

Query: 651 EEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVG 710
           EE  +  F N L+  LV   Q  RA  V   A +   FP+A +  + + WS++V  +S G
Sbjct: 605 EE--SMDFYNALVELLVYCNQKARAARVLADAMQRGAFPEAFIKTRRV-WSVNVHRMSAG 661

Query: 711 AALIAV 716
           A + A+
Sbjct: 662 ATVTAL 667


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 181/362 (50%), Gaps = 8/362 (2%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I    KA++L+ +  CF+K+ +     + ++YNV++       L  KA+E+ + M  G+
Sbjct: 13  IIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGK 71

Query: 301 -CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDT 358
             + D  TY  +I    K G +D A ++ +EM  R+   P    + S+VD + + G++D 
Sbjct: 72  SVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDR 131

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE-MRIAGFRPNFGLFTMII 417
           + ++  EM+  G  P    + +LI  +  A K+D AL+L+ E +  + ++P+   +T +I
Sbjct: 132 ACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALI 191

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   KSG L+ AM +   ME    +P   TYS LL     +G +D A+ L+  MTS G  
Sbjct: 192 DGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCV 251

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P + TYT L+  L     VD A  ++ EM       D VS + +L  Y + G ++ A + 
Sbjct: 252 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQL 311

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV--DLVLYTSVLAHL 594
            + M +     +      L       +  E A+ LLE  +++AA +  D+V Y+ V+A  
Sbjct: 312 FKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLEN-MKTAAGIDPDVVTYSIVVAGY 370

Query: 595 VR 596
            R
Sbjct: 371 SR 372



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 187/401 (46%), Gaps = 7/401 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + +   +  + D    +  EMV   +++GI+     Y  V+  L +  K++ +    
Sbjct: 80  YSTVINGFCKQGEMDRACEILREMV---TRDGIAPDVVTYTSVVDGLCRDGKMDRACEMV 136

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ESMEKGECSLDGSTYELMIPSLAK 317
           +++     + D  +++ L+T + N     +A ++Y E +       D  TY  +I    K
Sbjct: 137 REMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCK 196

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           SG L+ A+K+   M+ R   P+   ++SL+  + KAG LD ++ ++  M   G  P+   
Sbjct: 197 SGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVT 256

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI     A K+D A  L DEM      P+   +  +++ + + G+++ A  +F +M 
Sbjct: 257 YTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMA 316

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-TSAGLRPGLSTYTALLTLLAKRKLV 496
               LP   TY+CL+    ++ +++ A  L  +M T+AG+ P + TY+ ++   ++ K  
Sbjct: 317 TKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRF 376

Query: 497 DVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
             AA+ + EM     + + V+ S ++    K G VDHA+  L+ M +  +  +      +
Sbjct: 377 VEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSV 436

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             +  +    + A  LL        +  +V YT++L    R
Sbjct: 437 IGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSR 477



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 155/363 (42%), Gaps = 15/363 (4%)

Query: 159 QFVPKMV---HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDG 215
           + VP +V    +   L    D D +L LFR    +   VP    Y  L   L  +   D 
Sbjct: 214 KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGC-VPNVVTYTTLIHGLCAAHKVDA 272

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
              L DEM             +YN ++    +  ++E +   FK++    C  D  +Y  
Sbjct: 273 ARLLMDEMTATCCPPDTV---SYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTC 329

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGE-CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           L+  F N     +A  + E+M+       D  TY +++   +++ R   A +  QEM  R
Sbjct: 330 LVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIAR 389

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
           N  P+   ++SL+D + KAGR+D +M+V   M      PS   + S+I +  + G +D A
Sbjct: 390 NVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEA 449

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF-------LPTPST 447
            +L   M   G  P    +T ++E  +++G+++IA  +F  M +          L     
Sbjct: 450 WKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQA 509

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           +S L+     + ++D AM +   + S    P      A++  L +    + A K++  + 
Sbjct: 510 FSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSIS 569

Query: 508 TMG 510
            +G
Sbjct: 570 KVG 572



 Score = 99.4 bits (246), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 140/301 (46%), Gaps = 5/301 (1%)

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
           EC     T+ ++I    K+ +L  A+  F++M+E    P+   +  +V+ + KA     +
Sbjct: 2   ECQPTVVTWTIIIDGFCKANQLKQALACFEKMRE-FVAPNERTYNVVVNGLCKARLTSKA 60

Query: 360 MKVYMEMQ-GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA-GFRPNFGLFTMII 417
            +V  EM+ G    P    Y ++I  + K G++D A  +  EM    G  P+   +T ++
Sbjct: 61  YEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVV 120

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS-MTSAGL 476
           +   + GK+D A  +  +M+  G  P   T+S L+    ++ +VD A+KLY   +TS+  
Sbjct: 121 DGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSW 180

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +P + TYTAL+    K   ++ A K+L  M+      + V+ S +L    K G +D AL 
Sbjct: 181 KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALD 240

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             R M S G   N      L          ++A+ L++    +    D V Y ++L    
Sbjct: 241 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYC 300

Query: 596 R 596
           R
Sbjct: 301 R 301



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 5/212 (2%)

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
           +P    +T+II+   K+ +L  A++ F  M R    P   TY+ ++     +     A +
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYE 62

Query: 467 LYNSMTSA-GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM-GYSVDV-SASDVLMV 523
           +   M     + P L TY+ ++    K+  +D A +IL EM T  G + DV + + V+  
Sbjct: 63  VLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDG 122

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKV 582
             +DG +D A   +R M   G+  + F    L    C    + E+ K   E    S+ K 
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKP 182

Query: 583 DLVLYTSVLAHLVRCQDEQNERHLMAILSATK 614
           D+V YT+++    +  + +    ++ ++   K
Sbjct: 183 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRK 214


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 137/597 (22%), Positives = 245/597 (41%), Gaps = 65/597 (10%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDC-KIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           YN VI    K          F   +  +C + D  ++N L+ +    GL   A  +++ M
Sbjct: 306 YNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEM 365

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  +Y  ++ ++ K G++D A ++  +M  +   P+   +++++D   KAGR 
Sbjct: 366 SNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRF 425

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ ++ EM+          Y +L+  Y K G+ + AL +  EM   G + +   +  +
Sbjct: 426 DEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNAL 485

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  + K GK D    +F +M+R   LP   TYS L++ ++  G    AM+++    SAGL
Sbjct: 486 LGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGL 545

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS---------VDVSASDVLMVYIKD 527
           R  +  Y+AL+  L K  LV  A  ++ EM   G S         +D       M    D
Sbjct: 546 RADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSAD 605

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA------- 580
            S   +L +     S    T    V QLF            K   E   E +        
Sbjct: 606 YSNGGSLPFSSSALSELTETEGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRK 665

Query: 581 ------KVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQP 634
                 K ++V ++++L    RC   ++   L+  L    +K +  + GL  G   +++ 
Sbjct: 666 MHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMG---QREN 722

Query: 635 VLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQI---------NRARCVWKVAYEN 685
           V    +  F  ++ E++   A  F N L + L   GQ           R+R VW+  + +
Sbjct: 723 VWLQAQSLFDKVN-EMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWENVWSD 781

Query: 686 KLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYG-VVPRRIKLVTG-- 742
                           LD+  +S GAA   V   L   R  ++Y G  +P+ + ++TG  
Sbjct: 782 SC--------------LDLHLMSSGAARAMVHAWLLNIRS-IVYEGHELPKVLSILTGWG 826

Query: 743 --------PTLKIVIAQMLSSVESPFEVSKVVL---RAPGDSVMEWFKKPIVQQFLL 788
                     LK  +  +L  +++PF +SK  +    + G  V  W ++    + L+
Sbjct: 827 KHSKVVGDGALKRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATLKLLI 883



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 160/358 (44%), Gaps = 2/358 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I  L +  K+ ++   F+            +++ L++ +   GL  +A  ++ SM++  
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298

Query: 301 CSLDGSTYELMIPSLAKSG-RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
              +  TY  +I +  K G       K F EM+    +P    F SL+    + G  + +
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAA 358

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             ++ EM           Y +L+++  K G++D A  +  +M      PN   ++ +I+ 
Sbjct: 359 RNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDG 418

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
            AK+G+ D A+++F +M          +Y+ LL ++   G+ + A+ +   M S G++  
Sbjct: 419 FAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKD 478

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLR 538
           + TY ALL    K+   D   K+  EMK      + ++ S ++  Y K G    A+   R
Sbjct: 479 VVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFR 538

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              S+G+R +  +   L ++  KN L  SA  L++   +     ++V Y S++    R
Sbjct: 539 EFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR 596



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 134/302 (44%), Gaps = 6/302 (1%)

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL--FQEMKERNFRPSFNIFASLVDSMGK 352
           S E   C  D  TY  +I  L   G  D A+    F   +ER       + ++++ ++G+
Sbjct: 188 SFESKLCGSDDCTY--IIRELGNRGECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGR 245

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G++  + +++      G+  +   + +LI +Y ++G  + A+ +++ M+  G RPN   
Sbjct: 246 YGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVT 305

Query: 413 FTMIIESHAKSG-KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           +  +I++  K G +       F +M+R    P   T++ LL + +  G  ++A  L++ M
Sbjct: 306 YNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEM 365

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSV 530
           ++  +   + +Y  LL  + K   +D+A +IL +M       + VS S V+  + K G  
Sbjct: 366 SNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRF 425

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D AL     M    I  +      L     K    E A  +L        K D+V Y ++
Sbjct: 426 DEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNAL 485

Query: 591 LA 592
           L 
Sbjct: 486 LG 487


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 144/669 (21%), Positives = 272/669 (40%), Gaps = 101/669 (15%)

Query: 141 VVNRWKWGPELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSL 181
            V + K+G E+E+ ++ L  +P    +T+ + +                    +D   +L
Sbjct: 7   TVEKGKYGYEIESCINSLSQLPPRGSVTRCMDLYRSKLTMQDFSLIFREFAARSDWHRAL 66

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
            LF++ +RQ W  P +  Y ++  ++      +    +F++M  +  K  +  F+A   +
Sbjct: 67  RLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTA---L 123

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF-EIYESMEKGE 300
           I    +  + E S     ++     + +  +YN ++      GL ++    ++  M    
Sbjct: 124 INAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEG 183

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              D  TY  ++ + +  G ++ A  +F+ M E         + SLVD+   + +L    
Sbjct: 184 IQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVE 243

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           ++  EM+  G+ P    Y SLIE+YA AG +  A  ++ +M+  G  P+   ++ ++  +
Sbjct: 244 ELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIY 303

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
              G  +   S+F+DM+     PT +TY+ L+++    G    ++ L++ M  +G++P  
Sbjct: 304 GNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDD 363

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKT-------------------------------- 508
           +TY+ALL++  +  L   AAKI   M T                                
Sbjct: 364 ATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYR 423

Query: 509 ---MGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
               G    VSA D L+  Y K G    A   L  M  +G +     V  + E+  K  L
Sbjct: 424 IREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGL 483

Query: 565 YESAKPLL-ETYVESAAKVDLVLYTSVLAHLVRCQD---EQNERHLMAILSATKHKAHAF 620
           ++ A     E   +  ++VD   + ++L   V C     E+ +   + I   +K      
Sbjct: 484 HDEALEFFSELQQKEGSEVDERTHETLLG--VYCDMGLLEEAKEEFVIIKETSKVPGARV 541

Query: 621 LCGLFTGPEQRK-------------------QPVLSFVREFFHG------IDY------- 648
            C L +   +R                    Q V+  VR  +        ++Y       
Sbjct: 542 YCLLLSLCVRRSKWDYATQLLDEMIAAGGLHQVVVGIVRGTYDADFSWQVVEYAFDGLKL 601

Query: 649 -ELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNL 707
            ++EE  +  F N L+  LV   Q  RA  V   A +   FP+A +  + + WS++V  +
Sbjct: 602 RDMEE--SMDFYNALVELLVYCNQKARAARVLADAMQRGAFPEAFIKTRRV-WSVNVHRM 658

Query: 708 SVGAALIAV 716
           S GA + A+
Sbjct: 659 SAGATVTAL 667


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 182/397 (45%), Gaps = 7/397 (1%)

Query: 151 LETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNES 210
           L ++ D L     +  + +AL++    + +L+L RWA R      G   + M+   L   
Sbjct: 102 LASRRDDLLRAADLPSLLKALELSGHWEWALALLRWA-RAEGAADGPAPFEMVVRALGRE 160

Query: 211 RDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
              D + +L DEM       G  L   AY  V+  L++  + E +   F ++        
Sbjct: 161 GRHDAVCALLDEM---PLPPGARLDVRAYTTVLHALSREGRYERALRLFDELRREGVAPT 217

Query: 270 TQSYNVLMTLFLNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
             +YNV++ ++   G  + +   +   M       DG T   +I +  + G +D A+  F
Sbjct: 218 RVTYNVVLDVYGRMGRSWPRVVALLADMRAAGVEPDGFTASTVIAAAGRDGLVDEAVAFF 277

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +++K R   P    + +L+   GKAG    +++V  EM+  G +P A  Y  L  SYA+A
Sbjct: 278 EDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARA 337

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G    A +  D M   G  PN   +  I+ ++  +GK+D A+++F  M++ GF+P  +TY
Sbjct: 338 GFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTY 397

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + +L M     +  + +++   M+ +G  P   T+  LL +  KR +     ++L  MK+
Sbjct: 398 NLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKS 457

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG 544
               +     + L+  Y + GS  +A +    M ++G
Sbjct: 458 CKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAG 494



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 151/358 (42%), Gaps = 5/358 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +++ F   K +  + P    Y  L  V  ++ ++   L +  EM     K        
Sbjct: 271 DEAVAFFEDLKARG-HAPCVVTYNALLQVFGKAGNYTEALRVLREMEDAGCKPDAV---T 326

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +    A+A   + +  C   ++      +T +YN +MT + N G   +A  +++ M+
Sbjct: 327 YNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMK 386

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K       +TY L++  L K  R  A +++  EM      P+   + +L+   GK G   
Sbjct: 387 KNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMES 446

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              +V   M+ C        Y +LI +Y + G    A +++DEM  AGF P    +  ++
Sbjct: 447 YVTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALL 506

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              ++ G    A SI + M+  GF P   +YS LL+ HA  G       +   +    + 
Sbjct: 507 NVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIF 566

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHAL 534
           P       L+    K + ++   +   E+K  G+  D V  + +L +Y K+G    A+
Sbjct: 567 PSWVILRTLVIANFKCRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAM 624



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 112/274 (40%), Gaps = 12/274 (4%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           ++DEM   ++       + YN ++  L++      +     K+     K +  SY++L+ 
Sbjct: 486 MYDEM---TAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQ 542

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
                G       I + + +G           ++ +  K  RL+   + FQE+K R  +P
Sbjct: 543 CHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGIERAFQEVKARGHKP 602

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
              I  S++    K G    +M+++  ++  G  P    Y SL++ YAK+ +   A ++ 
Sbjct: 603 DLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKIL 662

Query: 399 DEMRIAG---------FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           + +R +           +P+   +  +I    K G +  A  + ++M   G  P   TY 
Sbjct: 663 NRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYH 722

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
            L+  +AS      A ++   M    L+P   TY
Sbjct: 723 TLVGGYASREMFAEAREVVGYMIQRKLKPMELTY 756


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 203/459 (44%), Gaps = 23/459 (5%)

Query: 152 ETQLDKLQFVPK-------------MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDE 198
           E ++D +Q++ +              + I    K +  ++ +L +F +   +    P   
Sbjct: 87  ECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMF-YRIGEFGCKPTVR 145

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
            Y  L D L     F  +  L+  M  D     I     YN +++ L K D+++ ++  F
Sbjct: 146 IYNHLLDALLSENKFQMINPLYTNMKKDGL---IPNVFTYNILLKALCKNDRVDAAHKLF 202

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++ +  C  D  +Y  +++     G    A E+      G        Y  +I  + K 
Sbjct: 203 VEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL-----AGRFKPSVPVYNALIDGMCKE 257

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR++ AIKL  EM +    P+   ++ +++S+  +G ++ +  ++ +M   G   +   +
Sbjct: 258 GRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTF 317

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI+     GKL  AL LW  M   G  PN   +  +I     +G L+ A+ +   M+R
Sbjct: 318 TPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQR 377

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
           +G LP  +TYS L++  A SG +  A + +N M S G RP + TYT ++ +L K  + D 
Sbjct: 378 SGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQ 437

Query: 499 AAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A  ++ +M   G + + ++ +  +     +G V+ A++ L  M   G   N     +L +
Sbjct: 438 ANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLD 497

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  +   YE A  L +       + +LV Y +VL    R
Sbjct: 498 ALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSR 536



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 191/430 (44%), Gaps = 9/430 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           + + LK   +  + L  F      + +      Y ++ + L    + D +  +  +M  D
Sbjct: 44  VLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMD 103

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
                  LF     +I    +    E +   F ++ +  CK   + YN L+   L++   
Sbjct: 104 GINCCEDLFIC---IINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKF 160

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
                +Y +M+K     +  TY +++ +L K+ R+DAA KLF EM  +   P    + ++
Sbjct: 161 QMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTM 220

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           V S+ KAG++D +     E+ G   +PS P+Y +LI+   K G+++ A++L  EM   G 
Sbjct: 221 VSSLCKAGKIDDA----RELAG-RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            PN   ++ II S   SG +++A ++F  M   G      T++ L++     G++  A+ 
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALD 335

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYI 525
           L+  M   G  P +  Y  L+  L     ++ A ++  +M+  G   +V+   +L+  + 
Sbjct: 336 LWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFA 395

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           K G +  A      M S G R N      + +   KN++++ A  L+E         + +
Sbjct: 396 KSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTI 455

Query: 586 LYTSVLAHLV 595
            + + +  L 
Sbjct: 456 TFNTFIKGLC 465



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 161/351 (45%), Gaps = 4/351 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           + P    Y  L D + +    +  + L  EM+ +     +    +Y+ +I  L  +  +E
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVV---SYSCIINSLCVSGNVE 296

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
           +++  F ++    C  +  ++  L+     +G  Y+A ++++ M +  C  +   Y  +I
Sbjct: 297 LAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLI 356

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L  +G L+ A+++  +M+     P+   ++ L+D   K+G L  + + +  M   G R
Sbjct: 357 HGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCR 416

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y  +++   K    D A  L ++M + G  PN   F   I+    +G+++ AM +
Sbjct: 417 PNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKL 476

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M+  G LP  +TY+ LL+      + + A  L+  + +  L+P L TY  +L   ++
Sbjct: 477 LERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSR 536

Query: 493 RKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGS 542
             ++  A ++  +    G + D ++ + ++  Y K G V  A + +  + S
Sbjct: 537 AGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSS 587



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 168/367 (45%), Gaps = 13/367 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  + + L  S + +   +LF +M        I  F+    +I+      KL  +   +K
Sbjct: 282 YSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTP---LIKGCFMRGKLYEALDLWK 338

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++   C+ +  +YN L+    + G   +A ++ + M++  C  + +TY ++I   AKSG
Sbjct: 339 LMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSG 398

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD--TSMKVYMEMQGCGHRPSAPM 377
            L  A + +  M     RP+   +  +VD + K    D   S+   M ++GC   P+   
Sbjct: 399 DLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGC--TPNTIT 456

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           + + I+     G+++ A++L + M+  G  PN   +  ++++  +  K + A  +F ++E
Sbjct: 457 FNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIE 516

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
                P   TY+ +L   + +G +  A++L+      G  P   TY  ++    K+  V 
Sbjct: 517 ARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVK 576

Query: 498 VAAKILLEMKTMG--YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN----NFI 551
           +AA+++  + +M   +   ++ + ++       +++ A+ +L    + GI  N    N +
Sbjct: 577 IAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNAL 636

Query: 552 VRQLFES 558
           VR  F+S
Sbjct: 637 VRCFFDS 643



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/289 (19%), Positives = 116/289 (40%), Gaps = 41/289 (14%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAK 247
           ++S  +P    Y +L D   +S D  G    ++ M+ H    N ++    Y  ++  L K
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVT----YTCMVDVLCK 431

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
               + +    +K+    C  +T ++N  +      G    A ++ E M+   C  + +T
Sbjct: 432 NSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITT 491

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  ++ +L +  + + A  LFQE++ RN +P+   + +++    +AG +  +++++ +  
Sbjct: 492 YNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKAL 551

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRL--------------------------W--- 398
             G  P +  Y ++I +Y K GK+  A +L                          W   
Sbjct: 552 VRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNI 611

Query: 399 -------DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
                  D+    G  PNF  +  ++     S      + I  D+ R G
Sbjct: 612 EEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 194/434 (44%), Gaps = 40/434 (9%)

Query: 200 YVMLFDVLNE-SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y ++ DV  +  R +D +L L DEM ++  +     F+  + VI    +   +  +   F
Sbjct: 270 YNVMLDVYGKMGRSWDKILDLLDEMRNEGLQ--FDEFTC-STVISACGREGLINEAKEFF 326

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++  S  +  T +YN L+ +F   G+  +A  I + ME   C+LD  TY  ++ +  ++
Sbjct: 327 VELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRA 386

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G  +    +   M  +   P+   + +++++ G+AG+   +++++ +M+  G  P+   Y
Sbjct: 387 GFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTY 446

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            S++    K  + +  +++  +MRI G  PN   +  ++      GK      +F +M+ 
Sbjct: 447 NSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKN 506

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            GF P   T++ L+  +   G    A K+Y+ M  AG  P  +TY ALL  LA+R     
Sbjct: 507 CGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKA 566

Query: 499 AAKILLEMKTMGYSV-DVSASDVLMVYIKDGSV--------------------------- 530
           A  +LL+M+  G+   + S S +L  Y K G+V                           
Sbjct: 567 AESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLIL 626

Query: 531 -DHALRWLRFMG-------SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            +   R +R M         +G + +  I   +     KN +YE A+ +L+   ES  + 
Sbjct: 627 ANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQP 686

Query: 583 DLVLYTSVLAHLVR 596
           DLV Y S++    R
Sbjct: 687 DLVTYNSLMNMYAR 700



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 148/345 (42%), Gaps = 36/345 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  VI    +A K   +   F ++  S C  +  +YN ++ L   K    +  +I   M
Sbjct: 410 TYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDM 469

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  T+  ++      G+      +F+EMK   F P  + F +L+ + G+ G  
Sbjct: 470 RINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSE 529

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + K+Y EM   G  P A  Y +L+ + A+ G    A  +  +MR  GF+PN   F+++
Sbjct: 530 LDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLM 589

Query: 417 IESHAKSGKLDIAMSIFTD----------------------------MERA-------GF 441
           +  +AK G +     I  D                            MERA       G+
Sbjct: 590 LHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGY 649

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P    ++ +L + A +   + A K+ + +  +GL+P L TY +L+ + A+R     A +
Sbjct: 650 KPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEE 709

Query: 502 ILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           IL  +   G S D VS + ++  + + G +  A+R +  M + GI
Sbjct: 710 ILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGI 754



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/356 (18%), Positives = 149/356 (41%), Gaps = 55/356 (15%)

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           +  D K+D+++  +++ +   +     A ++ + +   + SLD      ++ + +++G+ 
Sbjct: 189 VSGDVKLDSKAVELMIRILGRESKYSIALKLLDKIPIDKYSLDVRACTTILHAYSRNGKY 248

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR-------------------------- 355
             AI +F+ MK+    PS   +  ++D  GK GR                          
Sbjct: 249 KQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCST 308

Query: 356 ----------LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
                     ++ + + ++E++  G+ P    Y +L++ + KAG    AL +  EM    
Sbjct: 309 VISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNN 368

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
              +   +  ++ ++ ++G  +   ++   M R G +P   TY+ ++  +  +G+   A+
Sbjct: 369 CTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKAL 428

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
           +L+N M  +G  P + TY ++L LL K+   +   KIL +M+                  
Sbjct: 429 QLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRI----------------- 471

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
            +G   + + W   +   G +  +  V  +F   MKN  +E  K    T + +  +
Sbjct: 472 -NGCPPNRITWNTLLAMCGDKGKHKFVNHVFRE-MKNCGFEPGKDTFNTLISAYGR 525



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 88/202 (43%)

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           + F+E+ +  ++P   IF S++    K    + + K+   ++  G +P    Y SL+  Y
Sbjct: 639 RAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMY 698

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
           A+ G+   A  +   +  +G  P+   +  II+   + G +  A+ + ++M   G  P  
Sbjct: 699 ARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCI 758

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+  +  +A  G      ++ + M     +P   TY  ++    K +    A   +  
Sbjct: 759 FTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKARKYQDAMDFIFG 818

Query: 506 MKTMGYSVDVSASDVLMVYIKD 527
           +K +  S D  ++  L  +++D
Sbjct: 819 IKNIDDSFDNHSTQRLASHVRD 840


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 172/356 (48%), Gaps = 18/356 (5%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S Y++V+ YL  A K+E+++  F+++       D  +Y +++  F   GL  +A + +  
Sbjct: 484 STYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNE 543

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +  C+ +  TY  +I +  K+ ++  A +LF+ M      P+   +++L+D   KAG+
Sbjct: 544 MREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ 603

Query: 356 LDTSMKVYMEMQGC-----------------GHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           ++ + +++  M G                    RP+  +Y +L++ + K  +++ A +L 
Sbjct: 604 MEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLL 663

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           D M + G  PN  ++  +I+   K GKLD A  +  +M   GF  T  TYS L++ +   
Sbjct: 664 DAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKV 723

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSA 517
            + D A K+ + M      P +  YT ++  L K    D A K++  M+  G   + V+ 
Sbjct: 724 KRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTY 783

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           + ++  + + G ++  L  L  MGS G+  N    R L + C KN   + A  LLE
Sbjct: 784 TAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 839



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 146/322 (45%), Gaps = 18/322 (5%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           KAF +   M       D STY  ++  L  + +++ A  LF+EMK          +  +V
Sbjct: 466 KAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           DS  KAG ++ + K + EM+  G  P+   Y +LI +Y KA K+  A  L++ M   G  
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT---------------PST--YSC 450
           PN   ++ +I+ H K+G+++ A  IF  M  +  +P                P+   Y  
Sbjct: 586 PNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGA 645

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           LL+      +V+ A KL ++M+  G  P    Y AL+  L K   +D A ++  EM   G
Sbjct: 646 LLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHG 705

Query: 511 YSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
           +   + + S ++  Y K    D A + L  M  +    N  I  ++ +   K    + A 
Sbjct: 706 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 765

Query: 570 PLLETYVESAAKVDLVLYTSVL 591
            L++   E   + ++V YT+++
Sbjct: 766 KLMQMMEEKGCQPNVVTYTAMI 787



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 172/409 (42%), Gaps = 24/409 (5%)

Query: 119 HVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALK-VINDS 177
            ++  G+    +N S+  + +    +++    +  ++    F+P     ++ L  + N S
Sbjct: 438 EMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNAS 497

Query: 178 DTSLS--LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
              L+  LF   KR    V     Y ++ D   ++   +     F+EM        +  +
Sbjct: 498 KMELAFLLFEEMKRGGL-VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 556

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           +A   +I    KA K+  +   F+ +L   C  +  +Y+ L+      G   KA +I+E 
Sbjct: 557 TA---LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFER 613

Query: 296 MEKGECSLDGS-----------------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
           M   +   D                    Y  ++    K  R++ A KL   M      P
Sbjct: 614 MCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEP 673

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +  ++ +L+D + K G+LD + +V  EM   G   +   Y SLI+ Y K  + D A ++ 
Sbjct: 674 NQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVL 733

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
            +M      PN  ++T +I+   K GK D A  +   ME  G  P   TY+ +++     
Sbjct: 734 SKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRI 793

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           G++++ ++L   M S G+ P   TY  L+    K   +DVA  +L EMK
Sbjct: 794 GKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMK 842



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 140/314 (44%), Gaps = 18/314 (5%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L  +G+ + A  + +EM  + F P  + ++ ++  +  A +++ +  ++ EM+  G    
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVAD 517

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  +++S+ KAG ++ A + ++EMR  G  PN   +T +I ++ K+ K+  A  +F 
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-----------------GLR 477
            M   G LP   TYS L++ H  +GQ++ A +++  M  +                   R
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSER 637

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P +  Y ALL    K   V+ A K+L  M   G   +    D L+  + K G +D A   
Sbjct: 638 PNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 697

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              M   G     +    L +   K    + A  +L   +E++   ++V+YT ++  L +
Sbjct: 698 KAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 757

Query: 597 CQDEQNERHLMAIL 610
                    LM ++
Sbjct: 758 VGKTDEAYKLMQMM 771



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 149/306 (48%), Gaps = 7/306 (2%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           +++D L +     G L    E+  + S++G  +    Y+ +I    K  + +++     K
Sbjct: 676 IVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 735

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +L++ C  +   Y  ++      G   +A+++ + ME+  C  +  TY  MI    + G+
Sbjct: 736 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGK 795

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS-APMYV 379
           ++  ++L + M  +   P++  +  L+D   K G LD +  +  EM+   H P+ A  Y 
Sbjct: 796 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ-THWPTHAAGYR 854

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME-- 437
            +IE + K  +   +L L DE+      P   L+ +++++  K+ +L++A+ +  ++   
Sbjct: 855 KVIEGFNK--EFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATF 912

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
            A  +   STY+ L+E    + +VD A +L++ M+  G+ P + T+ +L+  L +   + 
Sbjct: 913 SATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKIS 972

Query: 498 VAAKIL 503
            A  +L
Sbjct: 973 EALLLL 978



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 144/687 (20%), Positives = 262/687 (38%), Gaps = 73/687 (10%)

Query: 117 DDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH--ITQALKVI 174
           D H +V  I +  ++A A+A  V   +   +G + +  L   QF  K+    + + L++I
Sbjct: 86  DLHQVVPIITQSSIDARAIADAVSGGDDV-FGSKSQKFLR--QFREKLSESLVIEVLRLI 142

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDV-------------LNESRDFDGML--SL 219
                 +S F WA RQ  Y      Y  L D+             L + RD D  +    
Sbjct: 143 ERPSAVISFFVWAGRQIGYKHTSPVYNALVDLIVRDDDEKVPEELLQQIRDDDKEVFGEF 202

Query: 220 FDEMVHDSSKNG---ISL--------------FSAYNRVIQYLAKADKLEMSYCCFKKVL 262
            + +V    ++G   I+L               S YN +IQ   KAD L+ +    +++ 
Sbjct: 203 LNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMS 262

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
            ++ ++D  +           G   +A  +   ME      D   Y  +I  L ++   +
Sbjct: 263 LANLRMDGFTLRCYAYSLCKVGKWREALTL---METENFVPDTVFYTKLISGLCEASLFE 319

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY--MEMQGCGHRPSAPMYVS 380
            A+     M+  +  P+   +++L+       +L    +V   M M+GC   PS  ++ S
Sbjct: 320 EAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGC--YPSPKIFNS 377

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK------LDIAMSIFT 434
           L+ +Y  +G    A +L  +M   G  P + ++ ++I S            L++A   ++
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYS 437

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M   G +      S       S+G+ + A  +   M   G  P  STY+ +L  L    
Sbjct: 438 EMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNAS 497

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +++A  +  EMK  G   DV    +++  + K G ++ A +W   M   G   N     
Sbjct: 498 KMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYT 557

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
            L  + +K      A  L ET +      ++V Y++++     C+  Q E+         
Sbjct: 558 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG--HCKAGQMEKAC------- 608

Query: 614 KHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQIN 673
             +    +CG    P+         V  +F   D +  E         LL+    + ++ 
Sbjct: 609 --QIFERMCGSKDVPD---------VDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVE 657

Query: 674 RARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYY-GV 732
            AR +          P  IV+D  I     V  L     + A M   H F   +  Y  +
Sbjct: 658 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSE-HGFPATLYTYSSL 716

Query: 733 VPRRIKLVTGPTLKIVIAQMLSSVESP 759
           + R  K+        V+++ML +  +P
Sbjct: 717 IDRYFKVKRQDLASKVLSKMLENSCAP 743



 Score = 46.2 bits (108), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 6/98 (6%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF----NIFASLVDSMGKAGRLDTSMK 361
           S Y L++ +L K+ RL+ A++L +E+    F  +     + + SL++S+  A ++D + +
Sbjct: 884 SLYRLLVDNLIKAQRLEMALRLLEEVA--TFSATLVDYSSTYNSLIESLCLANKVDKAFR 941

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
           ++ EM   G  P    + SLI+   +  K+  AL L D
Sbjct: 942 LFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLLD 979


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 160/359 (44%), Gaps = 2/359 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F  ++ +   L     +E +  CF K+        T+S N L+  F   G        ++
Sbjct: 25  FGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFK 84

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M          TY +MI  + K G ++AA  LF+EMK R   P    + S++D  GK G
Sbjct: 85  DMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVG 144

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           RLD ++  + EM+     P    Y +LI  + K GKL   L  + EM+  G +PN   ++
Sbjct: 145 RLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYS 204

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++++  K G +  A+  + DM R G +P   TY+ L++ +   G +  A +L N M   
Sbjct: 205 TLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQV 264

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
           G+   + TYTAL+  L   +       +L EM  +   V V    VL+  + K+  V  A
Sbjct: 265 GVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKA 324

Query: 534 LRWL-RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           + +  R     G++ N  I   + +   K    E+A  L E   +     D   YTS++
Sbjct: 325 IDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLM 383



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 139/319 (43%), Gaps = 4/319 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D + +  D +    LF+EM     +  I     YN +I    K  +L+ + C F+
Sbjct: 98  YNIMIDCMCKEGDVEAARGLFEEM---KFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFE 154

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++ D  C+ D  +YN L+  F   G   K  E +  M++     +  +Y  ++ +  K G
Sbjct: 155 EMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEG 214

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            +  AIK + +M+     P+   + SL+D+  K G L  + ++  EM   G   +   Y 
Sbjct: 215 MMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYT 274

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI+           L L DEM     +     F ++I+   K+  +  A+  F  +   
Sbjct: 275 ALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISND 334

Query: 440 -GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G     + Y+ +++      QV++A  L+  M   GL P  + YT+L+    K+  V  
Sbjct: 335 FGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLE 394

Query: 499 AAKILLEMKTMGYSVDVSA 517
           A  +  +M   G  +D+ A
Sbjct: 395 ALALRDKMVETGMKLDLLA 413



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 173/399 (43%), Gaps = 18/399 (4%)

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P F +F +L   +   G ++ +++ + +M+     P       L+  +AK GK D   R 
Sbjct: 23  PGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 82

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           + +M  AG +P    + ++I+   K G ++ A  +F +M+  G +P   TY+ +++    
Sbjct: 83  FKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGK 142

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VS 516
            G++D  +  +  M      P + TY AL+    K   +    +   EMK  G   + VS
Sbjct: 143 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVS 202

Query: 517 ASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            S ++  + K+G +  A+++   M   G+  N +    L ++  K      A  L    +
Sbjct: 203 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEML 262

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF-LCGLFTGPEQRKQPV 635
           +   + ++V YT+++  L   ++     HL+  +     K      C L  G  + K  +
Sbjct: 263 QVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNK--L 320

Query: 636 LSFVREFFHGI--DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIV 693
           +S   ++F  I  D+ L+  AA Y    +++ L    Q+  A  +++     ++  K +V
Sbjct: 321 VSKAIDYFGRISNDFGLQANAAIY--TAMIDGLCKGNQVEAATTLFE-----QMAQKGLV 373

Query: 694 FDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGV 732
            D+    SL   N   G  L A+       R +M+  G+
Sbjct: 374 PDRTAYTSLMDGNFKQGNVLEALA-----LRDKMVETGM 407



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 103/245 (42%), Gaps = 4/245 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+   VP +  Y  L D   +  +      L +EM+    +  +  ++A   +I  L   
Sbjct: 227 RRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTA---LIDGLCGW 283

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG-ECSLDGST 307
           +          ++++ D K+   ++ VL+       L  KA + +  +        + + 
Sbjct: 284 ENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAI 343

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  MI  L K  +++AA  LF++M ++   P    + SL+D   K G +  ++ +  +M 
Sbjct: 344 YTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMV 403

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G +     Y SL+   +   +L  A    +EM   G  P+  L   +++ H + G ++
Sbjct: 404 ETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIN 463

Query: 428 IAMSI 432
            A+ +
Sbjct: 464 EAVEL 468



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/232 (19%), Positives = 99/232 (42%), Gaps = 1/232 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    K   L  ++    ++L    + +  +Y  L+        P +   + + M
Sbjct: 237 TYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEM 296

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGR 355
            + +  +   T+ ++I  L K+  +  AI  F  +  +   + +  I+ +++D + K  +
Sbjct: 297 VELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQ 356

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           ++ +  ++ +M   G  P    Y SL++   K G +  AL L D+M   G + +   +T 
Sbjct: 357 VEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTS 416

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           ++   +   +L  A S   +M   G  P       +L+ H   G ++ A++L
Sbjct: 417 LVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCINEAVEL 468


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 188/427 (44%), Gaps = 46/427 (10%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           D DG L    EM  +  K    +F+ YN +I  L KA K + +     +++D     DT 
Sbjct: 241 DCDGALEFLKEM--NERKVAPDVFT-YNILIDGLCKASKTDKASEMLHEMVDRGVTPDTV 297

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++N +M      G   +A  +   M +  C     TY  +I  L K   +D A  L  E 
Sbjct: 298 TFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEF 357

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
               F P    ++ L D + K GR+D + ++  EM G G  P+   Y +LI+   KA K 
Sbjct: 358 VSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKT 417

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A  L + +  +GF P+   +T+I++   K G+LD A+ +   M + G  P+  TY+ L
Sbjct: 418 EKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTAL 477

Query: 452 LEMHASSGQVDSAMKLYNSMTSA------------------------------GLR--PG 479
           +E    +G+VD A  ++  M S                               G+R  P 
Sbjct: 478 MEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPY 537

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
           +  Y AL+    K   +D    +  +M   G   ++   +++M  + K G VD A  +L 
Sbjct: 538 IDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLE 597

Query: 539 FMGSSG----IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            M S+G    + + N I+  LF    K +  + A+ +L+  +++    D V Y +++A  
Sbjct: 598 SMHSAGCVPDVVSYNIIIDGLF----KASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF 653

Query: 595 VRCQDEQ 601
             C++E+
Sbjct: 654 --CKEER 658



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 186/448 (41%), Gaps = 42/448 (9%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           S +VP    Y +L D L +    D    L  EM   S K        YN +I  L KA K
Sbjct: 360 SGFVPDVVTYSILADGLCKRGRIDEAFELVKEM---SGKGCTPNLVTYNTLIDGLCKASK 416

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
            E +Y   + ++ S    D  +Y +++     +G   KA ++ E M K  C+    TY  
Sbjct: 417 TEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTA 476

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFR--------------------------------P 338
           ++  L ++GR+D A  +F+EM  ++                                  P
Sbjct: 477 LMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTP 536

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
             +++ +L+D   K GRLD    V+ +M   G  P+   Y  +++   K GK+D A    
Sbjct: 537 YIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFL 596

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           + M  AG  P+   + +II+   K+ K   A  +   M +AG  P   TY+ L+      
Sbjct: 597 ESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKE 656

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
            + D A+ +  +M  AG+ P   TY  L++ L++   +  A +++ EM   G  V    +
Sbjct: 657 ERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTT 716

Query: 519 --DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
              ++    K+G +  AL  +  M   G+  N        +   K    + A  LL    
Sbjct: 717 YNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLS--- 773

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDEQNER 604
           E     D V YT+V+  L  C+ EQ +R
Sbjct: 774 EMDTLRDEVSYTTVIIGL--CKAEQLDR 799



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 147/331 (44%), Gaps = 5/331 (1%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K  T + N  +   L  G   +   ++E M     + D  TY L+I SL +  ++D A  
Sbjct: 122 KHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFT 181

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           +  + K R F+P  +++  L  +  K GRL  +++++  +      P A  Y ++I  + 
Sbjct: 182 MLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----PDAIAYNAIIHGHC 237

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           +    D AL    EM      P+   + ++I+   K+ K D A  +  +M   G  P   
Sbjct: 238 RKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTV 297

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           T++ +++    +G+ + A  L   M     RP   TY  L++ L K++ VD A  ++ E 
Sbjct: 298 TFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEF 357

Query: 507 KTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
            + G+  DV    +L   + K G +D A   ++ M   G   N      L +   K +  
Sbjct: 358 VSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKT 417

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           E A  LLE+ V S    D+V YT ++  L +
Sbjct: 418 EKAYELLESLVSSGFVPDVVTYTIIVDGLCK 448



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 203/470 (43%), Gaps = 40/470 (8%)

Query: 138 IVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSW--YVP 195
           +++++   + G  +  +L++ +   +   +++ L+ + D  T++  F WA  + +     
Sbjct: 67  VLDLLGLLQSGSNIRERLEQWRGTLQPAVVSRVLQRLKDPQTAIVFFVWAGDRGFKHSTF 126

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSY 255
              C++     L E+   D + ++F+ M+ D+     S    Y+ VI+ L + ++++ ++
Sbjct: 127 TRNCFLQ---TLLENGSSDRIPAMFERML-DAGYAPDSY--TYHLVIKSLCQMNQIDKAF 180

Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI-----------YESMEKGEC--- 301
               K      K +   Y +L   F   G    A EI           Y ++  G C   
Sbjct: 181 TMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKN 240

Query: 302 SLDGS-----------------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
             DG+                 TY ++I  L K+ + D A ++  EM +R   P    F 
Sbjct: 241 DCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFN 300

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           S++D + KAG+ + +  +   M     RPS   Y +LI    K   +D A  L DE   +
Sbjct: 301 SIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSS 360

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           GF P+   ++++ +   K G++D A  +  +M   G  P   TY+ L++    + + + A
Sbjct: 361 GFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKA 420

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
            +L  S+ S+G  P + TYT ++  L K   +D A K++  M   G +  V     LM  
Sbjct: 421 YELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEG 480

Query: 525 I-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           + + G VD A    + M S     +      L     K++  + A+ +++
Sbjct: 481 LCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD 530



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 153/366 (41%), Gaps = 32/366 (8%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           F+++LD+    D+ +Y++++          KAF + +  +      + S Y ++  +  K
Sbjct: 148 FERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCK 207

Query: 318 SGRLDAAIKLF-------------------------------QEMKERNFRPSFNIFASL 346
           +GRL  A+++F                               +EM ER   P    +  L
Sbjct: 208 TGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNIL 267

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +D + KA + D + ++  EM   G  P    + S+++   KAGK + A  L   M     
Sbjct: 268 IDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNC 327

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
           RP+   +  +I    K   +D A  +  +   +GF+P   TYS L +     G++D A +
Sbjct: 328 RPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFE 387

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI- 525
           L   M+  G  P L TY  L+  L K    + A ++L  + + G+  DV    +++  + 
Sbjct: 388 LVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLC 447

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           K+G +D AL+ +  M   G   +      L E   +    + A  + +  V      D +
Sbjct: 448 KEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADAL 507

Query: 586 LYTSVL 591
            Y S++
Sbjct: 508 AYVSLV 513



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 122/273 (44%), Gaps = 10/273 (3%)

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            AI  F    +R F+ S       + ++ + G  D    ++  M   G+ P +  Y  +I
Sbjct: 108 TAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVI 167

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           +S  +  ++D A  + D+ ++ GF+P   ++T++  +  K+G+L  A+ IF +      +
Sbjct: 168 KSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRN------I 221

Query: 443 PTPS--TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           P+P    Y+ ++  H      D A++    M    + P + TY  L+  L K    D A+
Sbjct: 222 PSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKAS 281

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++L EM   G + D V+ + ++    K G  + A   L  M     R +      L    
Sbjct: 282 EMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGL 341

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
            K    + AK L++ +V S    D+V Y S+LA
Sbjct: 342 CKQQNVDRAKDLVDEFVSSGFVPDVVTY-SILA 373



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 124/280 (44%), Gaps = 5/280 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++    K ++ + +    K ++ +    D  +YN L++          A+E+   M
Sbjct: 645 TYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEM 704

Query: 297 EKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
            +  C +   +TY  +I  L K G L  A+ L   M       +   +   +D + K GR
Sbjct: 705 LRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGR 764

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFT 414
           LD +  +  EM       S   Y ++I    KA +LD A +L  EM  + G       F 
Sbjct: 765 LDEASSLLSEMDTLRDEVS---YTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFN 821

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I++  K+ +LD A+++   M + G  P+  TY+ ++       +VD A +L++ M   
Sbjct: 822 LLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVR 881

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           G+     +YT L+  L  +     A ++L EM +    +D
Sbjct: 882 GIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEID 921



 Score = 43.1 bits (100), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 70/164 (42%), Gaps = 7/164 (4%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE 209
           E++T  D++ +   ++ + +A ++    D +  L R              + +L D   +
Sbjct: 774 EMDTLRDEVSYTTVIIGLCKAEQL----DRASKLAREMVAVKGLCITSHTFNLLIDAFTK 829

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
           ++  D  L+L   MV       +     YN VI  L K DK++ ++  F ++        
Sbjct: 830 TKRLDEALTLLGLMVQRGCSPSVI---TYNMVITCLCKLDKVDKAWELFDEMAVRGIVAS 886

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           + SY VL+     +G   +A ++ E M   +C +D   +E + P
Sbjct: 887 SVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKWEDVAP 930


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 189/389 (48%), Gaps = 11/389 (2%)

Query: 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY 238
            +  +F WAK Q+ YV   E Y  + D+L + + F  M SL ++M      NG    +  
Sbjct: 104 VAFGVFIWAKNQTSYVHTPELYDYMIDILGKFKKFSLMWSLVEQM---KGLNGYVSLATA 160

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           ++V++ LAKA K + +   F+ +       D ++ NVLM   + +G    A   +  +E 
Sbjct: 161 SKVMRRLAKARKYKDAIDVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAF--LEF 218

Query: 299 GEC-SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            +C +LD S++ ++I    K+     A K+ +EM++  F P    ++  + +  +     
Sbjct: 219 KDCITLDSSSFNILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFR 278

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
               V+ EMQ  G +P+   Y +++ +  KA +L+ AL ++++M+  G  P+   ++ +I
Sbjct: 279 NVEAVFDEMQEKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLI 338

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              ++SG++  A  +F DME+ G       Y+ ++    +  Q  SA+KL   M     +
Sbjct: 339 YVLSQSGRIKDAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCK 398

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P + TY  LL +  +RK + +   +L  M     SVD+    +L+  + ++G ++HA  +
Sbjct: 399 PDVKTYAPLLKMCCRRKSIKLLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFY 458

Query: 537 LRFMGSSG----IRTNNFIVRQLFESCMK 561
            +     G    ++T   +V +L +  MK
Sbjct: 459 FQEAVLKGMVPMVKTFKALVEELEQKNMK 487


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/465 (22%), Positives = 207/465 (44%), Gaps = 16/465 (3%)

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYL 245
           A R S   P    Y  L     E+RD +G ++  +EM+      GI L  A +  +I   
Sbjct: 156 AMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEML----SQGIQLNEAVFCSIISGY 211

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
           A A   E +   F+K    +       YN ++  +   G       +   ME+     + 
Sbjct: 212 ASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNL 271

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
             Y  ++   A+    +  +  F  +K     P+   +  +V    KAG +  ++ +  E
Sbjct: 272 GLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEE 331

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G  P+  +Y  +++ YA+ G    A ++W++M  AG +P+   + +++ +  K+G+
Sbjct: 332 MDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGR 391

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           +D A+ +  +++    LPT  TY+ +L+ +   G +  A+++++ + +AGLRPG+ +Y +
Sbjct: 392 MDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNS 451

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSG 544
           LL+ LAK + ++ A  +L EM   G   +  +   L   Y + G V+ A    + M    
Sbjct: 452 LLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKEN 511

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
           +  +      L ++C K+   + A  + +   ++  K + + Y ++L    R  +    R
Sbjct: 512 LAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKAR 571

Query: 605 HLMAILSATKHKAH-------AFLCGLF-TGPEQRKQPVLSFVRE 641
            L+  +   KH  H       +F+   F +G  +     L+ +RE
Sbjct: 572 DLLKDMQ--KHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMRE 614



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 180/405 (44%), Gaps = 6/405 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCF 258
           Y  + +   E RD +  LS F    H     G+S  +A Y  +++   KA  +  +    
Sbjct: 274 YTTVLNGFAEIRDEEKCLSFF----HRLKACGLSPTAATYGCIVKLFTKAGNMAKALDIL 329

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +++       +   Y ++M  +   G    AF+++E M       D  TY +++ +  K+
Sbjct: 330 EEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKA 389

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR+D A+ + + ++     P+   + S++D   K G +  +++V+  ++  G RP    Y
Sbjct: 390 GRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSY 449

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SL+   AKA +++ A  + DEM   G  PN   +T + E +A++G ++ A  +F  M++
Sbjct: 450 NSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKK 509

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
                    Y  LL+    SG +  A++++  +T AGL+    TY  +L   A++  +  
Sbjct: 510 ENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSK 569

Query: 499 AAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A  +L +M+  G+ +D +  +  +    + G  +     L  M    +  N      L  
Sbjct: 570 ARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIH 629

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
             +  A  + A    E    S  ++D  L   +L+ L+ C  + +
Sbjct: 630 GWLAAADPDQAISCYEQAKASGLQLDSALSNCLLSGLISCASQNS 674



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 154/338 (45%), Gaps = 1/338 (0%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           + Y +L+  +   G    A   +E+M       +   Y  +I + A++  ++ A+   +E
Sbjct: 132 REYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEE 191

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M  +  + +  +F S++     AG  + +   + + +     P   +Y S++++Y +AG 
Sbjct: 192 MLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGN 251

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           ++T   L  +M   GF+ N GL+T ++   A+    +  +S F  ++  G  PT +TY C
Sbjct: 252 METVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGC 311

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           ++++   +G +  A+ +   M   G+ P    Y  ++   A+      A K+  +M + G
Sbjct: 312 IVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAG 371

Query: 511 YSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
              D+   ++L+  + K G +D AL  L  + ++ +         + +  +K    + A 
Sbjct: 372 LKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKAL 431

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
            + +    +  +  +V Y S+L+ L + +  +N R ++
Sbjct: 432 EVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLML 469



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 160/364 (43%), Gaps = 3/364 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++ + A+      +   F+ +  S  K +   Y  L+  +        A    E M 
Sbjct: 134 YGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEML 193

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                L+ + +  +I   A +G  +AA   F++ K  N  P   ++ S+V +  +AG ++
Sbjct: 194 SQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNME 253

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           T   +  +M+  G + +  +Y +++  +A+    +  L  +  ++  G  P    +  I+
Sbjct: 254 TVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIV 313

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K+G +  A+ I  +M++ G  P    Y+ +++ +A  G   +A K++  M SAGL+
Sbjct: 314 KLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLK 373

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKIL--LEMKTMGYSVDVSASDVLMVYIKDGSVDHALR 535
           P + TY  L+    K   +D A  +L  ++   +  +++   S +L  Y+K G +  AL 
Sbjct: 374 PDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTS-ILDGYVKGGHIQKALE 432

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               + ++G+R        L     K    E+A+ +L+  + +    +   YT++     
Sbjct: 433 VFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYA 492

Query: 596 RCQD 599
           R  D
Sbjct: 493 RAGD 496



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 135/320 (42%), Gaps = 11/320 (3%)

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA-----IKLFQEMKER 334
           F  K L  K  +  +S +KGE      + E       ++  +DA      +  FQ +   
Sbjct: 70  FEGKKLAIKLDDGRKSRQKGEEEYGDCSDEPAAQRFRETMEIDAGNWHKIVNAFQVID-- 127

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
             +P    +  LVD   + G    +   +  M+    +P+  +Y SLI +YA+A  ++ A
Sbjct: 128 --KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGA 185

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           +   +EM   G + N  +F  II  +A +G  + A   F   +    +P    Y+ +++ 
Sbjct: 186 VACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQA 245

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-V 513
           +  +G +++   L   M   G +  L  YT +L   A+ +  +        +K  G S  
Sbjct: 246 YCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPT 305

Query: 514 DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
             +   ++ ++ K G++  AL  L  M   G+  N  I   + +   +   + +A  + E
Sbjct: 306 AATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWE 365

Query: 574 TYVESAAKVDLVLYTSVLAH 593
             V +  K D+V Y ++L H
Sbjct: 366 DMVSAGLKPDIVTY-NILVH 384



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 114/259 (44%), Gaps = 3/259 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P  E Y  + D   +       L +FD +     + G+    +YN ++  LAKA ++E 
Sbjct: 408 LPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVV---SYNSLLSGLAKARQMEN 464

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++L +    + +SY  L   +   G   KAF +++ M+K   ++D   Y  ++ 
Sbjct: 465 ARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLK 524

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  KSG +  A+++FQ++ +   + +   + +++D   + G L  +  +  +MQ  G   
Sbjct: 525 ACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHL 584

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y S I++  ++G  +        MR      N   +T +I     +   D A+S +
Sbjct: 585 DTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCY 644

Query: 434 TDMERAGFLPTPSTYSCLL 452
              + +G     +  +CLL
Sbjct: 645 EQAKASGLQLDSALSNCLL 663


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 175/413 (42%), Gaps = 74/413 (17%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           I + L      D ++S+F W + +  +     C V+   +    ++  G +S    ++++
Sbjct: 150 IIKGLGFYKKCDMAMSVFSWVREREDFESVLNCSVVAVIITMLGKE--GKVSAASSILNN 207

Query: 227 SSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
             K+G  L   AY  +I   A   +   +   FKK+ +  CK    +YNV++ ++   G+
Sbjct: 208 LRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGM 267

Query: 286 PY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           P+ K   +   M+    + D  TY  +I    +    + A ++F+EMK   F P    F 
Sbjct: 268 PWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFN 327

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA------------------ 386
           +L+D  GK+ R   +M+V  EM+  G  PS   Y SLI +YA                  
Sbjct: 328 TLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEK 387

Query: 387 -----------------KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
                            KAG  + A+R++ EMR AG +PN   F  +I+ H   G+    
Sbjct: 388 GIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEM 447

Query: 430 M-----------------------------------SIFTDMERAGFLPTPSTYSCLLEM 454
           M                                    +F +M+RAGF+P   T++ L+  
Sbjct: 448 MKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISA 507

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           ++  G    AM +Y  M  AG+ P LS+Y A+L  LA+  L + + K+  EMK
Sbjct: 508 YSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMK 560



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 158/336 (47%), Gaps = 9/336 (2%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHD-----SSKNGISLFSAYNRVIQYLAKADK 250
           G +    L D   E  + D +LS   E  H      SS    SL      +I+ L    K
Sbjct: 100 GQQVLDSLIDPCFEGSELDKVLSQLFEYYHKEELSLSSGTWNSLSMDVLGIIKGLGFYKK 159

Query: 251 LEMSYCCFKKVL---DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
            +M+   F  V    D +  ++     V++T+   +G    A  I  ++ K    LD   
Sbjct: 160 CDMAMSVFSWVREREDFESVLNCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYA 219

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME-M 366
           Y  +I + A +GR   A+ +F++M+E   +P+   +  +++  GK G   + +   +  M
Sbjct: 220 YTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGM 279

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G  P    Y +LI    +    + A ++++EM+++GF P+   F  +++ + KS + 
Sbjct: 280 KSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRP 339

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             AM +  +ME +GF P+  TY+ L+  +A  G +  AM+L + M   G++P + TYT L
Sbjct: 340 KEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTL 399

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           L+   K  + + A +I  EM+  G   ++   + L+
Sbjct: 400 LSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALI 435



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 186/448 (41%), Gaps = 48/448 (10%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS----AYNRVIQY 244
           + S   P D  Y  L         ++    +F+EM        +S FS     +N ++  
Sbjct: 280 KSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEM-------KLSGFSPDKVTFNTLLDV 332

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
             K+ + + +    K++  S       +YN L++ +   GL  +A E+ + M +     D
Sbjct: 333 YGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPD 392

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  ++    K+G  + A+++F EM+    +P+   F +L+   G  GR    MKV+ 
Sbjct: 393 VFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFE 452

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           E++ C   P    + +L+  + + G       ++ EM+ AGF P    F  +I ++++ G
Sbjct: 453 EIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 512

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
               AM+++  M  AG  P  S+Y+ +L   A  G  + + K++  M     +P   TY 
Sbjct: 513 SFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYC 572

Query: 485 ALLTLLAKRK----------------------------LVDVAAKILLE-------MKTM 509
           +LL   A  K                            LV+    +L+E       +K  
Sbjct: 573 SLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKK 632

Query: 510 GYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G S D+S  + ++ +Y +   V  A   L FM  SG   +      L     ++  +E +
Sbjct: 633 G-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERS 691

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVR 596
           + +L+  +    K DL+ Y +V+    R
Sbjct: 692 EEVLKEILAKGLKPDLISYNTVIFAYCR 719



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/414 (18%), Positives = 173/414 (41%), Gaps = 56/414 (13%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + +F EM     K  I  F+A   +I+      +       F+++   +C  D  ++N L
Sbjct: 413 MRIFGEMRAAGCKPNICTFNA---LIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTL 469

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           + +F   G+  +   +++ M++     +  T+  +I + ++ G    A+ +++ M E   
Sbjct: 470 LAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGV 529

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P  + + +++ ++ + G  + S KV+ EM+    +P+   Y SL+ +YA + +++    
Sbjct: 530 TPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHT 589

Query: 397 L-----------------------------------WDEMRIAGFRPNFGLFTMIIESHA 421
           L                                   ++E++  G  P+      +I  + 
Sbjct: 590 LAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLNAMIAIYG 648

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           +   +  A  I   M  +GF P+ +TY+ L+ MH+ S   + + ++   + + GL+P L 
Sbjct: 649 RRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLI 708

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFM 540
           +Y  ++    +   +  A++I   MKT G   DV   +  +  Y  D   + A+  +R+M
Sbjct: 709 SYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYM 768

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
              G + N                  +   +++ Y + + + D +++ S L  L
Sbjct: 769 IKHGCKRNQ----------------NTYNSIVDGYCKHSRRADAIMFVSSLNQL 806



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 150/338 (44%), Gaps = 10/338 (2%)

Query: 154 QLDKLQFVPKMVHITQALKVI--NDSDTSLS-LFRWAKRQSWYVPGDECYVMLFDVLNES 210
           +++     P +V     L V   N  D+ +S +F+  KR + +VP  + +  L    +  
Sbjct: 453 EIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERDTFNTLISAYSRC 511

Query: 211 RDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
             F   ++++  M+    + G++   S+YN V+  LA+    E S   F ++ D  CK +
Sbjct: 512 GSFQQAMAVYKRML----EAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPN 567

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             +Y  L+  + N     +   + E +  G         + ++   +K   L      F+
Sbjct: 568 ELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFE 627

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           E+K++   P  +   +++   G+   +  + ++   M   G  PS   Y SL+  ++++ 
Sbjct: 628 ELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSE 686

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
             + +  +  E+   G +P+   +  +I ++ ++G++  A  IF+ M+  G +P   TY+
Sbjct: 687 NFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYN 746

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             +  +A+    + A+ +   M   G +   +TY +++
Sbjct: 747 TFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIV 784



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 90/221 (40%), Gaps = 37/221 (16%)

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           N  +  +II    K GK+  A SI  ++ + GF      Y+ L+  +AS+G+   A+ ++
Sbjct: 181 NCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVF 240

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKR----------------------------------- 493
             M   G +P L TY  +L +  K                                    
Sbjct: 241 KKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRR 300

Query: 494 -KLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
             L + AA++  EMK  G+S D V+ + +L VY K      A+  L+ M  SG   +   
Sbjct: 301 GSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVT 360

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
              L  +  ++ L   A  L +  VE   K D+  YT++L+
Sbjct: 361 YNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLS 401



 Score = 40.4 bits (93), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 1/141 (0%)

Query: 216 MLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           M++  +E+++  +++G S   + YN ++   ++++  E S    K++L    K D  SYN
Sbjct: 652 MVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYN 711

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            ++  +   G    A  I+  M+      D  TY   + S A     + AI + + M + 
Sbjct: 712 TVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKH 771

Query: 335 NFRPSFNIFASLVDSMGKAGR 355
             + + N + S+VD   K  R
Sbjct: 772 GCKRNQNTYNSIVDGYCKHSR 792


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 210/468 (44%), Gaps = 13/468 (2%)

Query: 136 AKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVI---NDSDTSLSLFRWAKRQSW 192
            K+ +V   WK+  E++        VP  V  T  + V+   N  D ++ +F   + Q+ 
Sbjct: 142 GKVGKVDMAWKFFHEMKAN----GLVPDDVTYTSMMGVLCKANRLDEAVEIFEQME-QNR 196

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
            VP    Y  +      +  FD   SL +      +K  I    AYN ++  L K  K +
Sbjct: 197 QVPCAYAYNTMIMGYGSAGKFDEAYSLLE---RQRAKGCIPSVVAYNCILTCLGKKGKTD 253

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F++ +  D   +  +YN+++ +    G    AF++ ++M++     +  T  +MI
Sbjct: 254 KALRIFEE-MKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMI 312

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L K+ +LD A  +F+ M  +   P    F SL+D +GK GR+D + ++Y  M      
Sbjct: 313 DRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQI 372

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+  +Y SLI ++ K  + +   +++ EM  +G  P+  L    ++   K+G+ +   ++
Sbjct: 373 PNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRAL 432

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F +++  GFLP   +YS L+     +G      +LY +M   G       Y  ++    K
Sbjct: 433 FEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCK 492

Query: 493 RKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
              V+ A ++L EMKTMG+    V+   V+    K   +D A        S+GI  N  I
Sbjct: 493 SGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVI 552

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              L +   K    + A  ++E  ++     ++  +  +L  LV+ ++
Sbjct: 553 YSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEE 600



 Score =  132 bits (332), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 199/452 (44%), Gaps = 24/452 (5%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           FSAY  +I  L++  + +     F ++ +   +++      L+ +F  +G    A  + +
Sbjct: 61  FSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLD 120

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M+      D   Y + I    K G++D A K F EMK     P    + S++  + KA 
Sbjct: 121 EMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKAN 180

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           RLD +++++ +M+     P A  Y ++I  Y  AGK D A  L +  R  G  P+   + 
Sbjct: 181 RLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYN 240

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            I+    K GK D A+ IF +M+R   +P   TY+ ++ M   +G V++A K+ ++M  A
Sbjct: 241 CILTCLGKKGKTDKALRIFEEMKRDA-MPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEA 299

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
           GL P + T   ++  L K + +D A  I   M     S D +    L+  + K G VD A
Sbjct: 300 GLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDA 359

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
            R    M  +    N  +   L  +  K    E    + +  + S    DL+L  + +  
Sbjct: 360 YRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDC 419

Query: 594 LVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVL--SFVREFFHGIDYEL- 650
           + +  + +  R L   +     KA  FL      P+ R   +L  S V+  F    YEL 
Sbjct: 420 VFKAGETEKGRALFEEI-----KARGFL------PDTRSYSILIHSLVKAGFARETYELY 468

Query: 651 ----EEGA---ARYFVNVLLNYLVLMGQINRA 675
               ++G     R + N +++     G++N+A
Sbjct: 469 YAMKDQGCVLDTRAY-NTVIDGFCKSGKVNKA 499



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 146/304 (48%), Gaps = 3/304 (0%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           ++ EM+       + L + Y   +  + KA + E     F+++       DT+SY++L+ 
Sbjct: 397 MYKEMMRSGCSPDLMLLNTY---MDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIH 453

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
             +  G   + +E+Y +M+   C LD   Y  +I    KSG+++ A +L +EMK     P
Sbjct: 454 SLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHP 513

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +   + S+VD + K  RLD +  ++ E +  G   +  +Y SLI+ + K G++D A  + 
Sbjct: 514 TVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVM 573

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           +EM   G  PN   +  +++   K+ +++ A+  F  M+     P   TY  L+      
Sbjct: 574 EEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKV 633

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
            + + A   +  M   GL+P   TYTA+++ LAK   V  A+ +    +  G   D ++ 
Sbjct: 634 RKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASY 693

Query: 519 DVLM 522
           + ++
Sbjct: 694 NAMI 697



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 161/353 (45%), Gaps = 5/353 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    +  L D L +    D    +++ M+     + I     Y  +I+   K D+ E  
Sbjct: 338 PDGATFCSLIDGLGKQGRVDDAYRIYERML---DADQIPNVVVYTSLIRNFFKCDRKEDG 394

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +  +K+++ S C  D    N  M      G   K   ++E ++      D  +Y ++I S
Sbjct: 395 HKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHS 454

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+G      +L+  MK++        + +++D   K+G+++ + ++  EM+  GH P+
Sbjct: 455 LVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPT 514

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y S+++  AK  +LD A  L++E +  G   N  +++ +I+   K G++D A  +  
Sbjct: 515 VVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVME 574

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M + G  P   T++CLL+    + +++ A+  + SM      P   TY  L+  L K +
Sbjct: 575 EMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVR 634

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL-RFMGSSGI 545
             + A     EM+  G   + ++ + ++    K G+V  A     RF  S GI
Sbjct: 635 KFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGI 687



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 135/286 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I  L KA     +Y  +  + D  C +DT++YN ++  F   G   KA+++ E M
Sbjct: 447 SYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEM 506

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +         TY  ++  LAK  RLD A  LF+E K      +  I++SL+D  GK GR+
Sbjct: 507 KTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRV 566

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  V  EM   G  P+   +  L++   KA +++ AL  +  M+     PN   + ++
Sbjct: 567 DEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCIL 626

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K  K + A   + +M++ G  P   TY+ ++   A SG V  A  L+    ++G 
Sbjct: 627 INGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGG 686

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            P  ++Y A++  L+       A ++  E +  G S+       L+
Sbjct: 687 IPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALL 732



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 1/231 (0%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           + ++   D   ++  EM    F P+      LV S  K+ +L  +  +   M+    RP+
Sbjct: 1   MVRTRNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPA 60

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +LI + ++ G+ D  L L+++M+  G+  N  L T +I   ++ G++D A+S+  
Sbjct: 61  FSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLD 120

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M+   F      Y+  ++     G+VD A K ++ M + GL P   TYT+++ +L K  
Sbjct: 121 EMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKAN 180

Query: 495 LVDVAAKILLEM-KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
            +D A +I  +M +        + + ++M Y   G  D A   L    + G
Sbjct: 181 RLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKG 231


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 175/404 (43%), Gaps = 78/404 (19%)

Query: 178 DTSLSLFRWAKRQSWY--VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL- 234
           D +L  F W  +Q  Y  +  +    ++  +L +        +LF+ +  D    G SL 
Sbjct: 152 DLALCAFDWFMKQKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQED----GFSLD 207

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY------- 287
             +Y  +I   A + +   +   FKK+ +  CK    +YNV++ +F   G P+       
Sbjct: 208 VYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLV 267

Query: 288 -----------------------------KAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
                                        +A +++E M+    S D  TY  ++    KS
Sbjct: 268 EKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKS 327

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
            R   A+K+  EM+   F PS   + SL+ +  + G LD +M++  +M   G +P    Y
Sbjct: 328 HRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTY 387

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL------------ 426
            +L+  + +AGK+++A+ +++EMR AG +PN   F   I+ +   GK             
Sbjct: 388 TTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINV 447

Query: 427 -----DIAM------------------SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
                DI                     +F +M+RAGF+P   T++ L+  ++  G  + 
Sbjct: 448 CGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQ 507

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           AM +Y  M  AG+ P LSTY  +L  LA+  + + + K+L EM+
Sbjct: 508 AMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME 551



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 191/442 (43%), Gaps = 7/442 (1%)

Query: 211 RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
           + FD  L  FD  +       +   S    VI  L K  ++  +   F  + +    +D 
Sbjct: 149 KKFDLALCAFDWFMKQKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDV 208

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR-LDAAIKLFQ 329
            SY  L++ F N G   +A  +++ ME+  C     TY +++    K G   +    L +
Sbjct: 209 YSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVE 268

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           +MK     P    + +L+    +      + +V+ EM+  G       Y +L++ Y K+ 
Sbjct: 269 KMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSH 328

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           +   A+++ +EM + GF P+   +  +I ++A+ G LD AM +   M   G  P   TY+
Sbjct: 329 RPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYT 388

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR-KLVDVAAKILLEMKT 508
            LL     +G+V+SAM ++  M +AG +P + T+ A + +   R K VD+  KI  E+  
Sbjct: 389 TLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDM-MKIFDEINV 447

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G S D V+ + +L V+ ++G         + M  +G          L  +  +   +E 
Sbjct: 448 CGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQ 507

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD-EQNERHLMAILSATKHKAHAFLCGLFT 626
           A  +    +++    DL  Y +VLA L R    EQ+E+ L  +            C L  
Sbjct: 508 AMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLH 567

Query: 627 GPEQRKQPVL--SFVREFFHGI 646
                K+  L  S   E + G+
Sbjct: 568 AYANGKEIGLMHSLAEEVYSGV 589



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 154/361 (42%), Gaps = 36/361 (9%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN L++ +   G+  +A E+   M +     D  TY  ++    ++G++++A+ +F+EM
Sbjct: 351 TYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEM 410

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           +    +P+   F + +   G  G+    MK++ E+  CG  P    + +L+  + + G  
Sbjct: 411 RNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMD 470

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
                ++ EM+ AGF P    F  +I ++++ G  + AM+++  M  AG  P  STY+ +
Sbjct: 471 SEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTV 530

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK----------------- 494
           L   A  G  + + K+   M     +P   TY +LL   A  K                 
Sbjct: 531 LAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVI 590

Query: 495 ------------------LVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
                             L+  A +   E+K  G+S D++  + ++ +Y +   V  A  
Sbjct: 591 EPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANE 650

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L +M   G   +      L     ++A +  ++ +L   +    K D++ Y +V+    
Sbjct: 651 VLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYC 710

Query: 596 R 596
           R
Sbjct: 711 R 711



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/410 (18%), Positives = 168/410 (40%), Gaps = 39/410 (9%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L      +   +  +++F+EM +   K  I  F+A+   I+      K       F 
Sbjct: 387 YTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAF---IKMYGNRGKFVDMMKIFD 443

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++       D  ++N L+ +F   G+  +   +++ M++     +  T+  +I + ++ G
Sbjct: 444 EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             + A+ +++ M +    P  + + +++ ++ + G  + S KV  EM+    +P+   Y 
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYC 563

Query: 380 SLIESYA-----------------------------------KAGKLDTALRLWDEMRIA 404
           SL+ +YA                                   K   L  A R + E++  
Sbjct: 564 SLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER 623

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           GF P+      ++  + +   +  A  +   M+  GF P+ +TY+ L+ MH+ S     +
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKS 683

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
            ++   + + G++P + +Y  ++    +   +  A++I  EM+  G   DV   +  +  
Sbjct: 684 EEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGS 743

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           Y  D   + A+  +R+M   G R N      + +   K    + AK  +E
Sbjct: 744 YAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVE 793



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 159/352 (45%), Gaps = 18/352 (5%)

Query: 162 PKMVHITQALKVI--NDSDTSLS-LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLS 218
           P +V     L V   N  D+ +S +F+  KR + +VP  E +  L    +    F+  ++
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERETFNTLISAYSRCGSFEQAMT 510

Query: 219 LFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           ++  M+      G++   S YN V+  LA+    E S     ++ D  CK +  +Y  L+
Sbjct: 511 VYRRML----DAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLL 566

Query: 278 TLFLNK---GLPYK-AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
             + N    GL +  A E+Y  + +    L     + ++   +K   L  A + F E+KE
Sbjct: 567 HAYANGKEIGLMHSLAEEVYSGVIEPRAVL----LKTLVLVCSKCDLLPEAERAFSELKE 622

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R F P      S+V   G+   +  + +V   M+  G  PS   Y SL+  ++++     
Sbjct: 623 RGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGK 682

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           +  +  E+   G +P+   +  +I ++ ++ ++  A  IF++M  +G +P   TY+  + 
Sbjct: 683 SEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIG 742

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            +A+    + A+ +   M   G RP  +TY +++    K    D  AK+ +E
Sbjct: 743 SYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD-EAKLFVE 793


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 164/354 (46%), Gaps = 5/354 (1%)

Query: 215 GMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           GM+     +  +++ NG ++    Y  ++ +LAK  K++ +    +K+  + C     +Y
Sbjct: 238 GMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATY 297

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N L+      G   +A ++   +    C+ D  TY  +I  L K  R   A KLF+EM  
Sbjct: 298 NALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMAS 357

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R        + +L+  + + G++  +  VY  M   G  P      ++I+  +KAG++  
Sbjct: 358 RGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGA 417

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A+R++  M   G  PN  +++ +I    K+ K+D A+ +   M++A   P   TY+ L++
Sbjct: 418 AVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILID 477

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
               SG V++A   ++ M  AG +P + TY  L++ L K    D A  +L +M +  + V
Sbjct: 478 GLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRF-V 536

Query: 514 DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
             S  D L    K G ++        M  SG+  +    R +F  C  N + E+
Sbjct: 537 YSSLVDGL---CKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEA 587



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 166/337 (49%), Gaps = 2/337 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N V+  L K+ K+  +   F+ V  S   +   ++++L+   +  G+  +A  + +   
Sbjct: 193 HNLVLHGLCKSGKVLAAMDHFEAVRRS-MPVSAATFSILINGLVKAGMMIQAHSLAQETT 251

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C++D  TY  ++  LAK+ ++  A+ L +++      P+   + +L++ + K GRL+
Sbjct: 252 TNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLE 311

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  ++   G  P    Y SLI+   K  +   A +L+ EM   G   +   +T +I
Sbjct: 312 EAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALI 371

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               ++GK+  A S++  M   G +P   T S +++  + +G++ +A++++ SM + GL 
Sbjct: 372 RGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLA 431

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P    Y+AL+  L K + +D A ++L +MK    + D    ++L+  + K G V+ A  +
Sbjct: 432 PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF 491

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
              M  +G + + +    L     K    ++A  +L+
Sbjct: 492 FDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLD 528



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 145/342 (42%), Gaps = 64/342 (18%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I  L K  +   +Y  FK++      +DT  Y  L+   L  G   +A  +Y++M 
Sbjct: 332 YTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMT 391

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  D  T   MI  L+K+GR+ AA+++F+ M+ R   P+  ++++L+  + KA ++D
Sbjct: 392 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 451

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF------- 410
            ++++  +M+     P    Y  LI+   K+G ++ A   +DEM  AG +P+        
Sbjct: 452 CALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 511

Query: 411 -GL----------------------FTMIIESHAKSGKLDIAMSIFTDMERAGF------ 441
            GL                      ++ +++   KSGKL+    +F +MER+G       
Sbjct: 512 SGLCKAGNTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTR 571

Query: 442 ---------------------------LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
                                      +P P  Y+ ++     SG+V+    +Y  MT  
Sbjct: 572 TRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEMTR- 630

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             +P   TY ALL  +     +D A    LEM   GY   VS
Sbjct: 631 WWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVPPVS 672



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 150/338 (44%), Gaps = 3/338 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKG-ECSLDGSTYELMIPSLAKSGRLDAAIKL 327
           D +++NVL+T +     P +AF +   ME+    +    T+ L++  L KSG++ AA+  
Sbjct: 153 DVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDH 212

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F+ ++ R+   S   F+ L++ + KAG +  +  +  E    G       Y +++   AK
Sbjct: 213 FEAVR-RSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAK 271

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
             K+  A+ L +++   G  P    +  ++    K G+L+ A+ +   +   G  P   T
Sbjct: 272 NKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT 331

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L++      +   A KL+  M S GL      YTAL+  L +   +  A+ +   M 
Sbjct: 332 YTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMT 391

Query: 508 TMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
           + G   D V+ S ++    K G +  A+R  + M + G+  N  +   L     K    +
Sbjct: 392 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 451

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
            A  +L    ++    D + Y  ++  L +  D +  R
Sbjct: 452 CALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 489



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 35/225 (15%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L +    K+ ++  P    Y +L D L +S D +   + FDEM+    K  +     
Sbjct: 451 DCALEMLAQMKK-AFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVY---T 506

Query: 238 YNRVIQYLAKA----------DKLEMSYCCFKKVLDSDCK-------------------I 268
           YN +I  L KA          D +  S   +  ++D  CK                    
Sbjct: 507 YNILISGLCKAGNTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVA 566

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           ++Q+   L+          +A  ++ ++ K E       Y  +I +L KSG+++    ++
Sbjct: 567 NSQTRTRLIFHLCKANRVDEAVSLFNAIRK-EGMPHPYAYNSIISALIKSGKVNEGQAVY 625

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           QEM  R ++P    + +L++ M  A R+D +   Y+EM G G+ P
Sbjct: 626 QEMT-RWWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVP 669


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 202/459 (44%), Gaps = 23/459 (5%)

Query: 152 ETQLDKLQFVPK-------------MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDE 198
           E ++D +Q++ +              + I    K +  ++ +L +F +   +    P   
Sbjct: 87  ECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMF-YRIGEFGCKPTVR 145

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
            Y  L D L     F  +  L+  M  D     I     YN +++ L K D+++ ++  F
Sbjct: 146 IYNHLLDALLSENKFQMINPLYTNMKKDGL---IPNVFTYNILLKALCKNDRVDAAHKLF 202

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++ +  C  D  +Y  +++     G    A E+      G        Y  +I  + K 
Sbjct: 203 VEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL-----AGRFKPSVPVYNALIDGMCKE 257

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR++ AIKL  EM +    P+   ++ +++S+  +G ++ +  ++ +M   G   +   +
Sbjct: 258 GRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTF 317

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI+     GKL  AL LW  M   G  PN   +  +I     +G L+ A+ +   M+R
Sbjct: 318 TPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQR 377

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
           +G LP  +TYS L++  A SG +  A + +N M S G RP + TYT ++ +L K  + D 
Sbjct: 378 SGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQ 437

Query: 499 AAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A  ++ +M   G + +    +  +  +  +G V+ A++ L  M   G   N     +L +
Sbjct: 438 ANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLD 497

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  +   YE A  L +       + +LV Y +VL    R
Sbjct: 498 ALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSR 536



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 9/408 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           + + LK   +  + L  F      + +      Y ++ + L    + D +  +  +M  D
Sbjct: 44  VLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMD 103

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
                  LF     +I    +    E +   F ++ +  CK   + YN L+   L++   
Sbjct: 104 GINCCEDLFIC---IINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKF 160

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
                +Y +M+K     +  TY +++ +L K+ R+DAA KLF EM  +   P    + ++
Sbjct: 161 QMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTM 220

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           V S+ KAG++D +     E+ G   +PS P+Y +LI+   K G+++ A++L  EM   G 
Sbjct: 221 VSSLCKAGKIDDA----RELAG-RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            PN   ++ II S   SG +++A ++F  M   G      T++ L++     G++  A+ 
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALD 335

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYI 525
           L+  M   G  P +  Y  L+  L     ++ A ++  +M+  G   +V+   +L+  + 
Sbjct: 336 LWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFA 395

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           K G +  A      M S G R N      + +   KN++++ A  L+E
Sbjct: 396 KSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVE 443



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 161/351 (45%), Gaps = 4/351 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           + P    Y  L D + +    +  + L  EM+ +     +    +Y+ +I  L  +  +E
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVV---SYSCIINSLCVSGNVE 296

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
           +++  F ++    C  +  ++  L+     +G  Y+A ++++ M +  C  +   Y  +I
Sbjct: 297 LAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLI 356

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L  +G L+ A+++  +M+     P+   ++ L+D   K+G L  + + +  M   G R
Sbjct: 357 HGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCR 416

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y  +++   K    D A  L ++M + G  PN   F   I+    +G+++ AM +
Sbjct: 417 PNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKL 476

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M+  G LP  +TY+ LL+      + + A  L+  + +  L+P L TY  +L   ++
Sbjct: 477 LERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSR 536

Query: 493 RKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGS 542
             ++  A ++  +    G + D ++ + ++  Y K G V  A + +  + S
Sbjct: 537 AGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSS 587



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 135/293 (46%), Gaps = 8/293 (2%)

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
            STY +MI  L +   +D    + Q+MK        ++F  +++   + G  + ++K++ 
Sbjct: 74  ASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFY 133

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
            +   G +P+  +Y  L+++     K      L+  M+  G  PN   + +++++  K+ 
Sbjct: 134 RIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKND 193

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           ++D A  +F +M   G  P   TY+ ++     +G++D A +L     +   +P +  Y 
Sbjct: 194 RVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL-----AGRFKPSVPVYN 248

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSS 543
           AL+  + K   ++VA K+L EM   G   + VS S ++      G+V+ A      M   
Sbjct: 249 ALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLR 308

Query: 544 GIRTNNFIVRQLFESC-MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           G   N      L + C M+  LYE A  L +  ++   + ++V Y +++  L 
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYE-ALDLWKLMIQDGCEPNVVAYNTLIHGLC 360



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 168/367 (45%), Gaps = 13/367 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  + + L  S + +   +LF +M        I  F+    +I+      KL  +   +K
Sbjct: 282 YSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTP---LIKGCFMRGKLYEALDLWK 338

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++   C+ +  +YN L+    + G   +A ++ + M++  C  + +TY ++I   AKSG
Sbjct: 339 LMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSG 398

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD--TSMKVYMEMQGCGHRPSAPM 377
            L  A + +  M     RP+   +  +VD + K    D   S+   M ++GC   P+   
Sbjct: 399 DLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGC--TPNTMT 456

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           + + I+     G+++ A++L + M+  G  PN   +  ++++  +  K + A  +F ++E
Sbjct: 457 FNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIE 516

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
                P   TY+ +L   + +G +  A++L+      G  P   TY  ++    K+  V 
Sbjct: 517 ARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVK 576

Query: 498 VAAKILLEMKTMG--YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN----NFI 551
           +AA+++  + +M   +   ++ + ++       +++ A+ +L    + GI  N    N +
Sbjct: 577 IAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNAL 636

Query: 552 VRQLFES 558
           VR  F+S
Sbjct: 637 VRCFFDS 643



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/289 (19%), Positives = 116/289 (40%), Gaps = 41/289 (14%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAK 247
           ++S  +P    Y +L D   +S D  G    ++ M+ H    N ++    Y  ++  L K
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVT----YTCMVDVLCK 431

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
               + +    +K+    C  +T ++N  +      G    A ++ E M+   C  + +T
Sbjct: 432 NSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITT 491

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  ++ +L +  + + A  LFQE++ RN +P+   + +++    +AG +  +++++ +  
Sbjct: 492 YNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKAL 551

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRL--------------------------W--- 398
             G  P +  Y ++I +Y K GK+  A +L                          W   
Sbjct: 552 VRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNI 611

Query: 399 -------DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
                  D+    G  PNF  +  ++     S      + I  D+ R G
Sbjct: 612 EEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 157/319 (49%), Gaps = 19/319 (5%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD    L  EM+    K  +   S Y++VI +L  A K+E ++  F+++       D  +
Sbjct: 438 FDKAFQLIKEMMR---KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 494

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y +L+  F   GL  +A  ++E M    CS    TY  +I +  K+ ++  A  +F  M 
Sbjct: 495 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 554

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG------------CGHR----PSAP 376
           +   RP+   + +LVD + KAG +  + +VY ++ G            C  R    P+  
Sbjct: 555 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 614

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +L++   KA K+D A  L D M  +G  PN  ++  +I+   K+GK+D A  +F  M
Sbjct: 615 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 674

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            + G+LP+  TY+ L++     G++D AMK+ + M      P + TYTA++  L +    
Sbjct: 675 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 734

Query: 497 DVAAKILLEMKTMGYSVDV 515
           + A K+L  M+  G S +V
Sbjct: 735 EKALKLLSLMEEKGCSPNV 753



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 17/339 (5%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A +IY  M    C L+          L   G+ D A +L +EM  + F P  + ++ ++ 
Sbjct: 406 AEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVIT 465

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
            +  A +++ +  ++ EM+  G  P    Y  LI+S+ KAG ++ A  L++EMR  G  P
Sbjct: 466 FLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSP 525

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
               +T +I ++ K+ ++  A  IF  M  AG  P   TY  L++    +G +  A ++Y
Sbjct: 526 TVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVY 585

Query: 469 NSMTSAG----------------LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +                    L P + TY AL+  L K   VD A ++L  M + G  
Sbjct: 586 AKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCE 645

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            +    D L+  + K G +D A      M   G   +      L +   K+   + A  +
Sbjct: 646 PNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 705

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
           L   ++ +   ++V YT+++  L R  + +    L++++
Sbjct: 706 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 744



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 159/350 (45%), Gaps = 23/350 (6%)

Query: 130 LNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS---DTSLSLFRW 186
           +N +  A+ +  V ++    +L  ++ +  FVP     ++ +  +  +   + +  LF+ 
Sbjct: 423 VNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQE 482

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
            K      P    Y +L D   ++   +    LF+EM        +  ++A   +I    
Sbjct: 483 MK-MVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTA---LIHAYL 538

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306
           KA ++  +   F +++D+ C+ +  +Y  L+      G   KAFE+Y  +     S D  
Sbjct: 539 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 598

Query: 307 ----------------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
                           TY  ++  L K+ ++D A +L   M      P+  ++ +L+D  
Sbjct: 599 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 658

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            KAG++D++ +V+++M  CG+ PS   Y SLI+   K G+LD A+++  +M      PN 
Sbjct: 659 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 718

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
             +T +I+   + G+ + A+ + + ME  G  P   TY+ L++    S Q
Sbjct: 719 VTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQSWQ 768



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/470 (21%), Positives = 175/470 (37%), Gaps = 78/470 (16%)

Query: 167 ITQALKVINDS-DTSLSLFRWAKRQSWYVPGDECYVMLFDVL---NESRDFDGML----- 217
           +   L  + D+ +     F WA+RQ  Y     CY  L D L     +RD + +L     
Sbjct: 108 VVAVLGAVRDAPELCARFFLWAERQVGYSHTGACYDALADALGFDGRARDAERLLREIGE 167

Query: 218 -------SLFDEMVHDSSKNG-----------ISLFS------AYNRVIQYLAKADKLEM 253
                   L + +V    + G           +  F        YN ++Q L+ A ++++
Sbjct: 168 EDREVLGRLLNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDL 227

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
            +   K++ +S   +D  +          +G    A ++   +E+ +  LD      MI 
Sbjct: 228 GFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDM---IEREDFKLDTVLCTHMIS 284

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L ++   D A+     M+  +  P+   + +L+    K  +L    ++   M   G  P
Sbjct: 285 GLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNP 344

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS---------- 423
           +  ++ SL+ SY        A +L + M   G  P + ++ + I S              
Sbjct: 345 NPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLD 404

Query: 424 -------------------------------GKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
                                          GK D A  +  +M R GF+P  STYS ++
Sbjct: 405 LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVI 464

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
                + +V+ A  L+  M   G+ P + TYT L+    K  L++ A  +  EM+++G S
Sbjct: 465 TFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS 524

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             V     L+  Y+K   V  A      M  +G R N+     L +   K
Sbjct: 525 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 574


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 175/404 (43%), Gaps = 78/404 (19%)

Query: 178 DTSLSLFRWAKRQSWY--VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL- 234
           D +L  F W  +Q  Y  +  +    ++  +L +    +G +S    M +   ++G SL 
Sbjct: 152 DLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGK----EGRVSSAANMFNGLQEDGFSLD 207

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY------- 287
             +Y  +I   A + +   +   FKK+ +  CK    +YNV++ +F   G P+       
Sbjct: 208 VYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLV 267

Query: 288 -----------------------------KAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
                                        +A +++E M+    S D  TY  ++    KS
Sbjct: 268 EKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKS 327

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
            R   A+K+  EM    F PS   + SL+ +  + G LD +M++  +M   G +P    Y
Sbjct: 328 HRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTY 387

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF----- 433
            +L+  + +AGK+++A+ +++EMR AG +PN   F   I+ +   GK    M IF     
Sbjct: 388 TTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINV 447

Query: 434 ------------------------------TDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
                                          +M+RAGF+P   T++ L+  ++  G  + 
Sbjct: 448 CGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQ 507

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           AM +Y  M  AG+ P LSTY  +L  LA+  + + + K+L EM+
Sbjct: 508 AMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME 551



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 187/441 (42%), Gaps = 5/441 (1%)

Query: 211 RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
           + FD  L  FD  +       +   S    +I  L K  ++  +   F  + +    +D 
Sbjct: 149 KKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDV 208

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR-LDAAIKLFQ 329
            SY  L++ F N G   +A  +++ ME+  C     TY +++    K G   +    L +
Sbjct: 209 YSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVE 268

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           +MK     P    + +L+    +      + +V+ EM+  G       Y +L++ Y K+ 
Sbjct: 269 KMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSH 328

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           +   A+++ +EM + GF P+   +  +I ++A+ G LD AM +   M   G  P   TY+
Sbjct: 329 RPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYT 388

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            LL     +G+V+SAM ++  M +AG +P + T+ A + +   R       KI  E+   
Sbjct: 389 TLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVC 448

Query: 510 GYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G S D V+ + +L V+ ++G         + M  +G          L  +  +   +E A
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQD-EQNERHLMAILSATKHKAHAFLCGLFTG 627
             +    +++    DL  Y +VLA L R    EQ+E+ L  +            C L   
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHA 568

Query: 628 PEQRKQPVL--SFVREFFHGI 646
               K+  L  S   E + G+
Sbjct: 569 YANGKEIGLMHSLAEEVYSGV 589



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 154/361 (42%), Gaps = 36/361 (9%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN L++ +   G+  +A E+   M +     D  TY  ++    ++G++++A+ +F+EM
Sbjct: 351 TYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEM 410

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           +    +P+   F + +   G  G+    MK++ E+  CG  P    + +L+  + + G  
Sbjct: 411 RNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMD 470

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
                ++ EM+ AGF P    F  +I ++++ G  + AM+++  M  AG  P  STY+ +
Sbjct: 471 SEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTV 530

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK----------------- 494
           L   A  G  + + K+   M     +P   TY +LL   A  K                 
Sbjct: 531 LAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVI 590

Query: 495 ------------------LVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
                             L+  A +   E+K  G+S D++  + ++ +Y +   V  A  
Sbjct: 591 EPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANG 650

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L +M   G   +      L     ++A +  ++ +L   +    K D++ Y +V+    
Sbjct: 651 VLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYC 710

Query: 596 R 596
           R
Sbjct: 711 R 711



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/410 (19%), Positives = 168/410 (40%), Gaps = 39/410 (9%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L      +   +  +S+F+EM +   K  I  F+A+   I+      K       F 
Sbjct: 387 YTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAF---IKMYGNRGKFTEMMKIFD 443

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++       D  ++N L+ +F   G+  +   +++ M++     +  T+  +I + ++ G
Sbjct: 444 EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             + A+ +++ M +    P  + + +++ ++ + G  + S KV  EM+    +P+   Y 
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYC 563

Query: 380 SLIESYA-----------------------------------KAGKLDTALRLWDEMRIA 404
           SL+ +YA                                   K   L  A R + E++  
Sbjct: 564 SLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER 623

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           GF P+      ++  + +   +  A  +   M+  GF P+ +TY+ L+ MH+ S     +
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKS 683

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
            ++   + + G++P + +Y  ++    +   +  A++I  EM+  G   DV   +  +  
Sbjct: 684 EEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGS 743

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           Y  D   + A+  +R+M   G R N      + +   K    + AK  +E
Sbjct: 744 YAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVE 793



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 158/352 (44%), Gaps = 18/352 (5%)

Query: 162 PKMVHITQALKVI--NDSDTSLS-LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLS 218
           P +V     L V   N  D+ +S +F+  KR + +VP  E +  L    +    F+  ++
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERETFNTLISAYSRCGSFEQAMT 510

Query: 219 LFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           ++  M+      G++   S YN V+  LA+    E S     ++ D  CK +  +Y  L+
Sbjct: 511 VYRRML----DAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLL 566

Query: 278 TLFLNK---GLPYK-AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
             + N    GL +  A E+Y  + +    L     + ++   +K   L  A + F E+KE
Sbjct: 567 HAYANGKEIGLMHSLAEEVYSGVIEPRAVL----LKTLVLVCSKCDLLPEAERAFSELKE 622

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R F P      S+V   G+   +  +  V   M+  G  PS   Y SL+  ++++     
Sbjct: 623 RGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGK 682

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           +  +  E+   G +P+   +  +I ++ ++ ++  A  IF++M  +G +P   TY+  + 
Sbjct: 683 SEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIG 742

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            +A+    + A+ +   M   G RP  +TY +++    K    D  AK+ +E
Sbjct: 743 SYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD-EAKLFVE 793


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/516 (21%), Positives = 220/516 (42%), Gaps = 42/516 (8%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  +      +  FD    L + +     +  I    ++N ++  L K  K++ 
Sbjct: 313 VPCAYAYNTMIMGYGSAERFDDAYKLLERL---RERGCIPSVVSFNSILTCLGKKRKVDE 369

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F  V+  D K +  +YN+++ +    G   +A++I + ME      +  +  +M+ 
Sbjct: 370 ALTLFD-VMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVD 428

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K+ +L+ A ++F+   ER   P+   + SL+D +GK G++D + +++ +M   GH  
Sbjct: 429 RLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDA 488

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +  +Y SLI ++   G+ +   +++ EM   G RP+  L    ++   K+G+++   +IF
Sbjct: 489 NPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIF 548

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            DM+  GFLP   +YS L+     +GQ      ++ +M+  G       Y A++  L K 
Sbjct: 549 EDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKS 608

Query: 494 KLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
             VD A ++L EMK       V+    ++    K   +D A        S GI  N  + 
Sbjct: 609 GKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILY 668

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
             L +   K    + A  +LE  ++     ++  + S++  LV+                
Sbjct: 669 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVK---------------- 712

Query: 613 TKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQI 672
           T+    A +C                    F  +  E++     Y  ++L+N L  + + 
Sbjct: 713 TEEIDEALIC--------------------FQSMK-EMKCSPNTYTYSILINGLCRVQKY 751

Query: 673 NRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLS 708
           N+A   W+   +  L P  + +   I+    V N++
Sbjct: 752 NKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNIT 787



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 152/313 (48%), Gaps = 4/313 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            R  DG   ++ EM+    +  ++L + Y   +  + KA ++E     F+ +       D
Sbjct: 504 GRKEDGH-KIYKEMIRRGGRPDLTLLNTY---MDCVFKAGEVEKGRAIFEDMKSFGFLPD 559

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            +SY++L+      G   +   I+++M +   +LD   Y  ++  L KSG++D A ++ +
Sbjct: 560 VRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLE 619

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EMK ++  P+   + S+VD + K  RLD +  ++ E +  G   +  +Y SLI+ + K G
Sbjct: 620 EMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVG 679

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++D A  + +EM   G  PN   +  ++++  K+ ++D A+  F  M+     P   TYS
Sbjct: 680 RIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYS 739

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+       + + A   +  M   GL P + TYT +++ LAK   +  A  +    KT 
Sbjct: 740 ILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTN 799

Query: 510 GYSVDVSASDVLM 522
           G   D ++ + L+
Sbjct: 800 GGIPDSASFNALI 812



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 170/374 (45%), Gaps = 4/374 (1%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           FSAY  +I  LA+A + E +    +++ D   ++    +  L+     +G    A  + +
Sbjct: 176 FSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVD 235

Query: 295 SMEKGEC-SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            + KG C   D   Y + I    K+G +D A K F E+K    RP    + S+V  + KA
Sbjct: 236 EV-KGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKA 294

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           GRL  + +++ +M+     P A  Y ++I  Y  A + D A +L + +R  G  P+   F
Sbjct: 295 GRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSF 354

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             I+    K  K+D A+++F D+ +    P  STY+ +++M   +G+V+ A K+ + M  
Sbjct: 355 NSILTCLGKKRKVDEALTLF-DVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMEL 413

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
           AGL P L +   ++  L K   ++ A +I       G + + V+   ++    K G +D 
Sbjct: 414 AGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDD 473

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A R    M  +G   N  I   L  +   +   E    + +  +    + DL L  + + 
Sbjct: 474 AYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMD 533

Query: 593 HLVRCQDEQNERHL 606
            + +  + +  R +
Sbjct: 534 CVFKAGEVEKGRAI 547



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 154/328 (46%), Gaps = 4/328 (1%)

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
           A R   + P    Y +L   L E+R  +  L L  +M     +  + LF+    +++ LA
Sbjct: 166 AMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTT---LVRALA 222

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306
           +  ++E +     +V  S  + D   YNV +  F   G    A++ +  ++      D  
Sbjct: 223 REGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDV 282

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           +Y  M+  L K+GRL  A +LF +M+     P    + +++   G A R D + K+   +
Sbjct: 283 SYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERL 342

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G  PS   + S++    K  K+D AL L+D M+    +PN   + +II+    +G++
Sbjct: 343 RERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMK-KDAKPNISTYNIIIDMLCMAGRV 401

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           + A  I  +ME AG  P   + + +++    + Q++ A +++ S +  G  P   TY +L
Sbjct: 402 NEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSL 461

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +  L K+  +D A ++  +M   G+  +
Sbjct: 462 IDGLGKKGKIDDAYRLFEKMLDAGHDAN 489



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 159/353 (45%), Gaps = 5/353 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L D L +    D    LF++M+ D+  +   +   Y  +I+      + E  
Sbjct: 453 PNSVTYCSLIDGLGKKGKIDDAYRLFEKML-DAGHDANPII--YTSLIRNFFMHGRKEDG 509

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +  +K+++    + D    N  M      G   K   I+E M+      D  +Y ++I  
Sbjct: 510 HKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHG 569

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+G+      +FQ M ++ F      + ++VD + K+G++D + +V  EM+     P+
Sbjct: 570 LTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPT 629

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y S+++  AK  +LD A  L++E +  G   N  L++ +I+   K G++D A  I  
Sbjct: 630 VATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILE 689

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M + G  P   T++ L++    + ++D A+  + SM      P   TY+ L+  L + +
Sbjct: 690 EMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQ 749

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL-RFMGSSGI 545
             + A     EM+  G   +V     ++  + K G++  A     RF  + GI
Sbjct: 750 KYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGI 802



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 134/279 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I  L KA +   +   F+ +      +D ++YN ++      G   KA+E+ E M
Sbjct: 562 SYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEM 621

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +        +TY  ++  LAK  RLD A  LF+E K +    +  +++SL+D  GK GR+
Sbjct: 622 KVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRI 681

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  +  EM   G  P+   + SL+++  K  ++D AL  +  M+     PN   ++++
Sbjct: 682 DEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSIL 741

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    +  K + A   + +M++ G +P   TY+ ++   A  G +  A  L+    + G 
Sbjct: 742 INGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGG 801

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
            P  +++ AL+  ++       A ++  E +  G  ++V
Sbjct: 802 IPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNV 840



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 174/386 (45%), Gaps = 24/386 (6%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           S Y ++I +LA++ + + A++L ++M++  +  S  +F +LV ++ + G+++ ++ +  E
Sbjct: 177 SAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDE 236

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           ++G    P   +Y   I+ + KAG +D A + + E++  G RP+   +T ++    K+G+
Sbjct: 237 VKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGR 296

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           L  A  +F  ME    +P    Y+ ++  + S+ + D A KL   +   G  P + ++ +
Sbjct: 297 LGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNS 356

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           +LT L K++ VD A  +   MK        + + ++ +    G V+ A +    M  +G+
Sbjct: 357 ILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGL 416

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
             N   V  + +   K    E A  + E+  E     + V Y S++  L +     +   
Sbjct: 417 FPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYR 476

Query: 606 LMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFF--------HGIDYELEEGAAR- 656
           L   +    H A+  +               S +R FF        H I  E+     R 
Sbjct: 477 LFEKMLDAGHDANPII-------------YTSLIRNFFMHGRKEDGHKIYKEMIRRGGRP 523

Query: 657 --YFVNVLLNYLVLMGQINRARCVWK 680
               +N  ++ +   G++ + R +++
Sbjct: 524 DLTLLNTYMDCVFKAGEVEKGRAIFE 549


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 194/472 (41%), Gaps = 24/472 (5%)

Query: 141 VVNRWKWGPELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSL 181
            V + K+  ++ET +++L  +P    I + L                       D   SL
Sbjct: 59  TVEKGKYSYDVETLINRLTALPPRGSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSL 118

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
            LF++ +RQ W  P +  + ++  +L      D    +FDEM    S   +    +Y  +
Sbjct: 119 RLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEM---PSNGVVRTVYSYTAI 175

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF-EIYESMEKGE 300
           I    +  +   S      +          +YN ++      GL ++    ++  M    
Sbjct: 176 INAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEG 235

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              D  TY  ++ + A  G  D A  +F+ M E    P  N ++ LV + GK  RL+   
Sbjct: 236 IQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVS 295

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           ++  EM+  G+ P    Y  L+E+YA+ G +  A+ ++ +M+ AG   N   +++++  +
Sbjct: 296 ELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLY 355

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K G+ D    +F +M+ +   P   TY+ L+++    G     + L++ M    + P +
Sbjct: 356 GKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNM 415

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRF 539
            TY  L+    K  L + A KILL M   G      A + V+  + +    + AL     
Sbjct: 416 QTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNT 475

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           M   G          L  +  +  LY+ A+ +L    ES  K D+  +  V+
Sbjct: 476 MNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVI 527



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 146/334 (43%), Gaps = 4/334 (1%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
            D +  +FR    +S  VP    Y  L     +    + +  L  EM        +   +
Sbjct: 256 GDEAEMVFR-TMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREM---ECGGNLPDIT 311

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +++  A+   ++ +   F+++  + C  +  +Y+VL+ L+   G      +++  M
Sbjct: 312 SYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEM 371

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +      D  TY ++I    + G     + LF +M E N  P+   +  L+ + GK G  
Sbjct: 372 KVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLY 431

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + K+ + M   G  PS+  Y  +IE++ +A   + AL +++ M   G  P    +  +
Sbjct: 432 EDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSL 491

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I + A+ G    A +I + M  +G      +++ ++E     GQ + A+K Y  M  A  
Sbjct: 492 IHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANC 551

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            P   T  A+L++     LVD   +   E+K  G
Sbjct: 552 EPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASG 585


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 178/381 (46%), Gaps = 8/381 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VH 225
           + +AL++    + +L+L RWA  +           M+   L      D +  L DEM + 
Sbjct: 116 LLKALELSGHWEWALALLRWASDEG--AADAAALEMVVRALGREGQHDVVCDLLDEMPLP 173

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
             S+  +    AY  V+  L++A + E +   F ++          +YNV++ ++   G 
Sbjct: 174 PGSRLDVR---AYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGR 230

Query: 286 PY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
            + +   + E M       D  T   +I +  + G LD A+  F+++K R   P    + 
Sbjct: 231 SWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYN 290

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +L+   GKAG    +++V  EM+  G +P A  Y  L  +YA+AG  + A +  D M   
Sbjct: 291 ALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSK 350

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  PN   +  ++ ++A  G++D A+++F  M++ G++P  +TY+ +  M     +  + 
Sbjct: 351 GLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAM 410

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
           +++   M+ +G  P   T+  +L +  KR + D   ++L  MK+ G  +     + L+  
Sbjct: 411 LEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISA 470

Query: 524 YIKDGSVDHALRWLRFMGSSG 544
           Y + GS  +A +    M SSG
Sbjct: 471 YGRCGSRTYAFKMYDEMISSG 491



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 180/415 (43%), Gaps = 5/415 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +++ F   K +  +VP    Y  L  V  ++ ++   L +  EM  DS     ++   
Sbjct: 268 DQAVAFFEDLKARG-HVPCVVTYNALLQVFGKAGNYTEALRVLKEM-EDSGCQPDAV--T 323

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +    A+A   E +  C   +       +T +YN +MT + N G   +A  +++ M+
Sbjct: 324 YNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMK 383

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K     + +TY L+   L K  R  A +++ +EM      P+   + +++   GK G  D
Sbjct: 384 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 443

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              +V   M+ CG   S   Y +LI +Y + G    A +++DEM  +GF P    +  ++
Sbjct: 444 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 503

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              ++ G    A SI + M + GF P   +YS LL+ +A  G       +   +    + 
Sbjct: 504 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 563

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P       L+    K + ++   K   E+K  GY  D V  + +L +Y K+G    A   
Sbjct: 564 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 623

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              +  SG+  +      L +   K+     A+ +L+    S  K D+V Y +V+
Sbjct: 624 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI 678



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 135/310 (43%), Gaps = 3/310 (0%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           ++DEM+   S       + YN ++  L++      +     K+L +  K + QSY++L+ 
Sbjct: 483 MYDEMI---SSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQ 539

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +   G       I + +  G           ++ +  K  RL+   K FQE+K + ++P
Sbjct: 540 CYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKP 599

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
              IF S++    K G    + +++  ++  G  P    Y SL++ YAK+ +   A ++ 
Sbjct: 600 DLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKIL 659

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
            +++ +  +P+   +  +I    K G +  A  I ++M   G  P   TY  L+  +AS 
Sbjct: 660 KQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASL 719

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
              + A ++ N M    L+P   TY  ++    K K  D A + L E+     + D    
Sbjct: 720 EMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKLQ 779

Query: 519 DVLMVYIKDG 528
            +L   IKD 
Sbjct: 780 HMLEARIKDA 789



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 153/369 (41%), Gaps = 33/369 (8%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +  A   +   D +L+LF   K+   YVP    Y ++F +L +   F  ML + +EM   
Sbjct: 362 VMTAYANVGRVDEALALFDRMKKNG-YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRS 420

Query: 227 S---------------SKNGISLF-----------------SAYNRVIQYLAKADKLEMS 254
                            K G+  +                   YN +I    +      +
Sbjct: 421 GCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYA 480

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +  + +++ S       +YN L+ +   +G    A  I   M K     +  +Y L++  
Sbjct: 481 FKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQC 540

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            AK G       + +E+      PS+ I  +LV +  K  RL+   K + E++  G++P 
Sbjct: 541 YAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPD 600

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
             ++ S++  YAK G    A  ++D ++ +G  P+   +  +++ +AKS +   A  I  
Sbjct: 601 LVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILK 660

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            ++ +   P   +Y+ ++      G +  A ++ + M + G+ P + TY  L+   A  +
Sbjct: 661 QLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLE 720

Query: 495 LVDVAAKIL 503
           + + A +++
Sbjct: 721 MFNEAREVV 729


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 186/438 (42%), Gaps = 39/438 (8%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P  + Y  L   L   RD   ++ L +EM     +  I     Y   I+ L +A +++ +
Sbjct: 225 PSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIY---TYTICIRVLGRAGRIDDA 281

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG--------------- 299
           Y   K + D  C  D  +Y VL+      G   KA E+Y  M                  
Sbjct: 282 YGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSK 341

Query: 300 ---------------ECSLDG-----STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
                          E   DG      TY +++ +L KSG++D A  +   M+ R   P+
Sbjct: 342 FGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPN 401

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
            + + +L+  +    RLD +++++  M+  G  P+A  YV  I+ Y K G  + AL  ++
Sbjct: 402 LHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFE 461

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           +M+  G  P+       + S A+ G++  A  IF D+   G  P   TY+ +++ ++ +G
Sbjct: 462 KMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAG 521

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           Q+D A KL   M S G  P +    +L+  L K   VD A ++   +K +  +  V   +
Sbjct: 522 QIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYN 581

Query: 520 VLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
           +L+  + K+G +  AL     M  SG   N      L +   KN   + A  +       
Sbjct: 582 ILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIM 641

Query: 579 AAKVDLVLYTSVLAHLVR 596
               D++ Y +++  L++
Sbjct: 642 NCSPDVLTYNTIIYGLIK 659



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 161/318 (50%), Gaps = 3/318 (0%)

Query: 195  PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
            P  E Y  L D L      +  L LF EM +      I     YN ++    K+ +++  
Sbjct: 786  PTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIF---TYNLLLDAHGKSKRIDEL 842

Query: 255  YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
            +  + ++L   CK +  ++N++++  +      KA ++Y  +  G+ S    TY  +I  
Sbjct: 843  FELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGG 902

Query: 315  LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            L K+GR + A+K+F+EM +   +P+  I+  L++  GKAG ++ +  ++  M   G RP 
Sbjct: 903  LLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPD 962

Query: 375  APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
               Y  L+E     G++D A+  ++E+++ G  P+   + ++I    KS +L+ A+S+F+
Sbjct: 963  LKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFS 1022

Query: 435  DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            +M+  G  P   TY+ L+    ++G VD A K++  +   GL P + TY AL+   +K  
Sbjct: 1023 EMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSG 1082

Query: 495  LVDVAAKILLEMKTMGYS 512
              D A  +  +M  +G S
Sbjct: 1083 NKDRAFSVFKKMMIVGCS 1100



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 161/324 (49%), Gaps = 1/324 (0%)

Query: 237  AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +YN ++  L   +  E +   F ++ ++ C  +  +YN+L+          + FE+Y  M
Sbjct: 790  SYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEM 849

Query: 297  EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                C  +  T+ ++I +L KS  ++ A+ L+ E+   +F P+   +  L+  + KAGR 
Sbjct: 850  LCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRS 909

Query: 357  DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            + +MK++ EM     +P+  +Y  LI  + KAG ++ A  L+  M   G RP+   +T++
Sbjct: 910  EEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTIL 969

Query: 417  IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
            +E    +G++D A+  F +++  G  P   +Y+ ++     S +++ A+ L++ M + G+
Sbjct: 970  VECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGI 1029

Query: 477  RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
             P L TY AL+       +VD A K+  E++ MG   +V   + L+  + K G+ D A  
Sbjct: 1030 SPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFS 1089

Query: 536  WLRFMGSSGIRTNNFIVRQLFESC 559
              + M   G   N     QL   C
Sbjct: 1090 VFKKMMIVGCSPNAGTFAQLPNKC 1113



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 186/424 (43%), Gaps = 39/424 (9%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R S + P    Y+ L        D + +   + EM  D     +     Y  +++ L K+
Sbjct: 324 RASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVV---TYTILVEALCKS 380

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K++ ++     +       +  +YN L++  LN     +A E++ +ME    +    +Y
Sbjct: 381 GKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSY 440

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            L I    K G  + A+  F++MK+R   PS     + + S+ + GR+  +  ++ ++  
Sbjct: 441 VLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHN 500

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           CG  P +  Y  +++ Y+KAG++D A +L  EM   G  P+  +   +I++  K+G++D 
Sbjct: 501 CGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDE 560

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +F  ++     PT  TY+ L+      G++  A+ L+ SM  +G  P   T+ ALL 
Sbjct: 561 AWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLD 620

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV------------------------- 523
            L K   VD+A K+   M  M  S DV   + ++                          
Sbjct: 621 CLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPD 680

Query: 524 ----------YIKDGSVDHALRW-LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
                      +KDG V+ A++  + F+  SG++T+N +  +L E  +  A  E A    
Sbjct: 681 HVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFA 740

Query: 573 ETYV 576
           E  V
Sbjct: 741 EGLV 744



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 175/383 (45%), Gaps = 16/383 (4%)

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM---VHD 226
           ALK I+D +++LS F+   +    V   E    + + L      + M  +FD M   V +
Sbjct: 95  ALKSISDPNSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVIN 154

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
            + N       Y  + + L+    +  +     K+  +   ++  SYN L+   L  G  
Sbjct: 155 RNPN------TYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFC 208

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +A ++Y+ M          TY  ++ +L +       + L +EM+    RP+   +   
Sbjct: 209 KEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTIC 268

Query: 347 VDSMGKAGRLDTSMKVY--MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +  +G+AGR+D +  +   ME +GCG  P    Y  LI++   AGKLD A  L+ +MR +
Sbjct: 269 IRVLGRAGRIDDAYGILKTMEDEGCG--PDVVTYTVLIDALCAAGKLDKAKELYTKMRAS 326

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
             +P+   +  ++      G L+     +++ME  G+ P   TY+ L+E    SG+VD A
Sbjct: 327 SHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQA 386

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV- 523
             + + M   G+ P L TY  L++ L   + +D A ++   M+++G +   + S VL + 
Sbjct: 387 FDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVA-PTAYSYVLFID 445

Query: 524 -YIKDGSVDHALRWLRFMGSSGI 545
            Y K G  + AL     M   GI
Sbjct: 446 YYGKLGDPEKALDTFEKMKKRGI 468



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 154/307 (50%), Gaps = 5/307 (1%)

Query: 271  QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            +SYN LM   L   +   A +++  M+   C  +  TY L++ +  KS R+D   +L+ E
Sbjct: 789  ESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNE 848

Query: 331  MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
            M  R  +P+      ++ ++ K+  ++ ++ +Y E+      P+   Y  LI    KAG+
Sbjct: 849  MLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGR 908

Query: 391  LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
             + A+++++EM     +PN  ++ ++I    K+G ++IA  +F  M + G  P   +Y+ 
Sbjct: 909  SEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTI 968

Query: 451  LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            L+E    +G+VD A+  +  +   GL P   +Y  ++  L K + ++ A  +  EMK  G
Sbjct: 969  LVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRG 1028

Query: 511  YSVDVSASDVLMVYIKD-GSVDHA---LRWLRFMG-SSGIRTNNFIVRQLFESCMKNALY 565
             S ++   + L+++  + G VD A      L+FMG    + T N ++R   +S  K+  +
Sbjct: 1029 ISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAF 1088

Query: 566  ESAKPLL 572
               K ++
Sbjct: 1089 SVFKKMM 1095



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 97/246 (39%), Gaps = 36/246 (14%)

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           H P    Y  ++E     G+++    ++D M+      N   +  I ++ +  G +  A 
Sbjct: 120 HTPETCNY--MLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAP 177

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
                M +AGF+    +Y+ L+      G    A+K+Y  M S GL+P + TY+AL+  L
Sbjct: 178 FALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVAL 237

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
            +R+       +L EM+T+G   ++    +                +R +G +G      
Sbjct: 238 GRRRDTGTIMDLLEEMETLGLRPNIYTYTI---------------CIRVLGRAG------ 276

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
                          + A  +L+T  +     D+V YT ++  L         + L   +
Sbjct: 277 -------------RIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKM 323

Query: 611 SATKHK 616
            A+ HK
Sbjct: 324 RASSHK 329


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 178/381 (46%), Gaps = 8/381 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VH 225
           + +AL++    + +L+L RWA  +           M+   L      D +  L DEM + 
Sbjct: 116 LLKALELSGHWEWALALLRWASDEG--AADAAALEMVVRALGREGQHDVVCDLLDEMPLP 173

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
             S+  +    AY  V+  L++A + E +   F ++          +YNV++ ++   G 
Sbjct: 174 PGSRLDVR---AYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGR 230

Query: 286 PY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
            + +   + E M       D  T   +I +  + G LD A+  F+++K R   P    + 
Sbjct: 231 SWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYN 290

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +L+   GKAG    +++V  EM+  G +P A  Y  L  +YA+AG  + A +  D M   
Sbjct: 291 ALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSK 350

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  PN   +  ++ ++A  G++D A+++F  M++ G++P  +TY+ +  M     +  + 
Sbjct: 351 GLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAM 410

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
           +++   M+ +G  P   T+  +L +  KR + D   ++L  MK+ G  +     + L+  
Sbjct: 411 LEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISA 470

Query: 524 YIKDGSVDHALRWLRFMGSSG 544
           Y + GS  +A +    M SSG
Sbjct: 471 YGRCGSRTYAFKMYDEMISSG 491



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 180/415 (43%), Gaps = 5/415 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +++ F   K +  +VP    Y  L  V  ++ ++   L +  EM  DS     ++   
Sbjct: 268 DQAVAFFEDLKARG-HVPCVVTYNALLQVFGKAGNYTEALRVLKEM-EDSGCQPDAV--T 323

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +    A+A   E +  C   +       +T +YN +MT + N G   +A  +++ M+
Sbjct: 324 YNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMK 383

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K     + +TY L+   L K  R  A +++ +EM      P+   + +++   GK G  D
Sbjct: 384 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 443

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              +V   M+ CG   S   Y +LI +Y + G    A +++DEM  +GF P    +  ++
Sbjct: 444 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 503

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              ++ G    A SI + M + GF P   +YS LL+ +A  G       +   +    + 
Sbjct: 504 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 563

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P       L+    K + ++   K   E+K  GY  D V  + +L +Y K+G    A   
Sbjct: 564 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 623

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              +  SG+  +      L +   K+     A+ +L+    S  K D+V Y +V+
Sbjct: 624 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI 678



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 135/310 (43%), Gaps = 3/310 (0%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           ++DEM+   S       + YN ++  L++      +     K+L +  K + QSY++L+ 
Sbjct: 483 MYDEMI---SSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQ 539

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +   G       I + +  G           ++ +  K  RL+   K FQE+K + ++P
Sbjct: 540 CYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKP 599

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
              IF S++    K G    + +++  ++  G  P    Y SL++ YAK+ +   A ++ 
Sbjct: 600 DLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKIL 659

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
            +++ +  +P+   +  +I    K G +  A  I ++M   G  P   TY  L+  +AS 
Sbjct: 660 KQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASL 719

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
              + A ++ N M    L+P   TY  ++    K K  D A + L E+     + D    
Sbjct: 720 EMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKLQ 779

Query: 519 DVLMVYIKDG 528
            +L   IKD 
Sbjct: 780 HMLEARIKDA 789



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 150/358 (41%), Gaps = 33/358 (9%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS---------- 227
           D +L+LF   K+   YVP    Y ++F +L +   F  ML + +EM              
Sbjct: 373 DEALALFDRMKKNG-YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNT 431

Query: 228 -----SKNGISLF-----------------SAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
                 K G+  +                   YN +I    +      ++  + +++ S 
Sbjct: 432 MLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSG 491

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
                 +YN L+ +   +G    A  I   M K     +  +Y L++   AK G      
Sbjct: 492 FTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIE 551

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            + +E+      PS+ I  +LV +  K  RL+   K + E++  G++P   ++ S++  Y
Sbjct: 552 SIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMY 611

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
           AK G    A  ++D ++ +G  P+   +  +++ +AKS +   A  I   ++ +   P  
Sbjct: 612 AKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDV 671

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
            +Y+ ++      G +  A ++ + M + G+ P + TY  L+   A  ++ + A +++
Sbjct: 672 VSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVV 729


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/488 (23%), Positives = 201/488 (41%), Gaps = 11/488 (2%)

Query: 239 NRVIQYLAKADKL-EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           N++++ L  A +L E      K++ +  C  D  SYN L+  F N+    +A E+   M 
Sbjct: 133 NQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMA 192

Query: 298 KGE---CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
             +   C  +  +Y ++I      G++D A  LF EM +R  +P+   + +++D + KA 
Sbjct: 193 DSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQ 252

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            +D +  V+ +M   G +P    Y  LI  Y   GK    +R+ +EM   G +P+   + 
Sbjct: 253 VVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYG 312

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++     +G+   A  +F  M R G  P  + Y  L+  +A+ G +     L N M   
Sbjct: 313 SLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVEN 372

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           GL P    +  + T  AK+ ++D A  I  +MK  G S DV     L+    K G VD A
Sbjct: 373 GLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDA 432

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           +     M + G+  N F+   L         +E AK      +    + D+V + ++L +
Sbjct: 433 VLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCN 492

Query: 594 LVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEG 653
           L         + L+ ++     +          G       ++  + E    +D  L  G
Sbjct: 493 LCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIG----GHCLVGRIDEAAKSLDVMLSVG 548

Query: 654 AA--RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGA 711
                +  N LL+     G+I+ A  V++    N + P  + +   +      R  S   
Sbjct: 549 LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAK 608

Query: 712 ALIAVMHT 719
            L   M T
Sbjct: 609 ELYLNMIT 616



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 169/382 (44%), Gaps = 12/382 (3%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           LFD M+    K  +++   Y  +I   A    L   +     ++++    D   +N++ T
Sbjct: 330 LFDSMIRKGIKPNVAI---YGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFT 386

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +  K +  +A  I+  M++   S D   Y  +I +L K GR+D A+  F +M      P
Sbjct: 387 AYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAP 446

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +  +F SLV  +    + + + + Y EM   G RP    + +++ +    G++  A RL 
Sbjct: 447 NIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI 506

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           D M   G RP    +T +I  H   G++D A      M   G  P   TY+ LL  +  +
Sbjct: 507 DLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRA 566

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G++D A  ++  M   G+ PG+ TY+ +L  L   +    A ++ L M T G   ++   
Sbjct: 567 GRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIY 626

Query: 519 DVLMVYI-KDGSVDHALRWLRFMGSSG----IRTNNFIVRQLFESCMKNALYESAKPLLE 573
           ++++  + K+  VD A +  + + S      I T N ++  LF    K+   E A  L  
Sbjct: 627 NIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALF----KSGRNEDAMHLFA 682

Query: 574 TYVESAAKVDLVLYTSVLAHLV 595
           T        D+  Y  +  +L+
Sbjct: 683 TISSYGLVPDVFTYCLIAENLI 704



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 164/377 (43%), Gaps = 1/377 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++ YL    +   +   F  ++    K +   Y +L+  +  KG   +  ++   M
Sbjct: 310 TYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLM 369

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   S D   + ++  + AK   +D A+ +F +MK++   P    + +L+D++ K GR+
Sbjct: 370 VENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRV 429

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++  + +M   G  P+  ++ SL+       K + A   + EM   G RP+   F  I
Sbjct: 430 DDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTI 489

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + +    G++  A  +   MER G  P   +Y+ L+  H   G++D A K  + M S GL
Sbjct: 490 LCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGL 549

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +P   TY  LL    +   +D A  +  EM   G +   V+ S +L           A  
Sbjct: 550 KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKE 609

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M +SG + N +I   +     KN   + A  L ++      ++++  +  ++  L 
Sbjct: 610 LYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALF 669

Query: 596 RCQDEQNERHLMAILSA 612
           +    ++  HL A +S+
Sbjct: 670 KSGRNEDAMHLFATISS 686



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 152/362 (41%), Gaps = 3/362 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  VI       +++ +Y  F +++D   + +  +Y  ++       +  +A  +++ M
Sbjct: 205 SYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQM 264

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I      G+    +++ +EM     +P    + SL++ +   GR 
Sbjct: 265 IDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC 324

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++  M   G +P+  +Y  LI  YA  G L     L + M   G  P+  +F +I
Sbjct: 325 REARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
             ++AK   +D AM IF  M++ G  P    Y  L++     G+VD A+  +N M + G+
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGV 444

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P +  + +L+  L      + A +   EM   G   DV   + ++  +   G V  A R
Sbjct: 445 APNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQR 504

Query: 536 WLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            +  M   G R        L    C+   + E+AK  L+  +    K D   Y ++L   
Sbjct: 505 LIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKS-LDVMLSVGLKPDEWTYNTLLHGY 563

Query: 595 VR 596
            R
Sbjct: 564 CR 565



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 136/306 (44%), Gaps = 4/306 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++ +F   K+Q    P    Y  L D L +    D  +  F++M+++     I +F  
Sbjct: 395 DEAMHIFNKMKQQGLS-PDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVF-- 451

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            N ++  L   DK E +   + ++L+   + D   +N ++     KG   KA  + + ME
Sbjct: 452 -NSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLME 510

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +        +Y  +I      GR+D A K    M     +P    + +L+    +AGR+D
Sbjct: 511 RVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRID 570

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  V+ EM   G  P    Y +++       +   A  L+  M  +G + N  ++ +I+
Sbjct: 571 DAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIIL 630

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              +K+  +D A  +F  +    F    +T++ ++     SG+ + AM L+ +++S GL 
Sbjct: 631 NGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLV 690

Query: 478 PGLSTY 483
           P + TY
Sbjct: 691 PDVFTY 696



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 136/341 (39%), Gaps = 44/341 (12%)

Query: 300 ECSL----DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           EC++    D  TY ++I    + GRL+     F  + +  +R +  +   L+  +  A R
Sbjct: 85  ECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKR 144

Query: 356 LDTSMKVYM---------------------------------------EMQGCGHRPSAP 376
           L  +M + +                                       + QG    P+  
Sbjct: 145 LCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVV 204

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y  +I  +   G++D A  L+ EM   G +PN   +T +I+   K+  +D A  +F  M
Sbjct: 205 SYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQM 264

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   TY+CL+  + S G+    +++   M++ GL+P   TY +LL  L      
Sbjct: 265 IDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC 324

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
             A  +   M   G   +V+   +L+  Y   G++      L  M  +G+  ++ I   +
Sbjct: 325 REARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           F +  K A+ + A  +     +     D+V Y +++  L +
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCK 425



 Score = 42.7 bits (99), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 74/170 (43%), Gaps = 4/170 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +  +FR   R     PG   Y  +   L  +R F     L+  M+    +  I +   
Sbjct: 570 DDAYGVFREMLRNG-ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWI--- 625

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++  L+K + ++ ++  F+ +   D +++  ++N+++      G    A  ++ ++ 
Sbjct: 626 YNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATIS 685

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
                 D  TY L+  +L + G L+    LF  M++    P+  +  +LV
Sbjct: 686 SYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALV 735



 Score = 40.8 bits (94), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 69/335 (20%), Positives = 128/335 (38%), Gaps = 27/335 (8%)

Query: 381 LIESYAKAGKL--DTALRLWDEM-------RIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           +I S A++G L  D AL+L+D +        +  F       + +    + + + ++ +S
Sbjct: 18  VIGSRARSGSLGLDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVS 77

Query: 432 IFTDMERAGFL---PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           +F  M R   +   P P TYS L+      G+++     +  +  +G R        LL 
Sbjct: 78  LFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLK 137

Query: 489 LLAKRKLVDVAAKILLE-MKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIR 546
            L   K +  A  IL++ M  +G + DV + + L+  +  +   + AL  L  M  S  R
Sbjct: 138 GLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGR 197

Query: 547 T---NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ--DEQ 601
           +   N      +          + A  L    ++   + ++V YT+V+  L + Q  D  
Sbjct: 198 SCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRA 257

Query: 602 NERHLMAILSATKHKAHAFLCGL--FTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV 659
                  I    K     + C +  +    + K+ V        HG+  +       Y  
Sbjct: 258 EGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDC------YTY 311

Query: 660 NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVF 694
             LLNYL   G+   AR ++       + P   ++
Sbjct: 312 GSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIY 346


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 194/448 (43%), Gaps = 46/448 (10%)

Query: 127 KPFLNASAVAKIVEVVNR-WKWGPELET---QLDKLQFVPKMVHITQALKVINDSD--TS 180
           +P L++S +  I++ + R  +W   LE        + F P  V I   L+++      T+
Sbjct: 41  EPNLSSSELLSIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTT 100

Query: 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNR 240
           +S    + R+  Y      Y  L   L+ +R F   L  F++M     +  +     YN 
Sbjct: 101 VSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLV---TYNV 157

Query: 241 VIQ-YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
           +I  Y  K    E     F+++     + D  +YN  +T   +  L  +A E++  M+  
Sbjct: 158 IIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSS 217

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
            C+ D  TY  ++    K+G  + A  + +EM+     P+   +  L+ + G+AG  + +
Sbjct: 218 NCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAA 277

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            ++   M   G  P    Y SL+ +Y++AGK++ A+ ++++MR +   PN   F  +I  
Sbjct: 278 AEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGM 337

Query: 420 HAKSGKLDIAMSIFTDME-----------------------------------RAGFLPT 444
           H K+      M IF DM+                                   +AGF P 
Sbjct: 338 HGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPD 397

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
            +T++ L+E +   G  D A+ +Y+ M  AG  P L+T+  LL  LA+    + A  IL 
Sbjct: 398 KATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILD 457

Query: 505 EMKTMGYSV-DVSASDVLMVYIKDGSVD 531
           E+    Y   D++ + +L  Y   G ++
Sbjct: 458 ELNRSSYKPNDIAYASMLHAYANGGELE 485



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 167/388 (43%), Gaps = 37/388 (9%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY--------------------------- 273
           +++ L +  +L      FK + +    +D  +Y                           
Sbjct: 88  MLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAG 147

Query: 274 --------NVLMTLFLNKGLPYKA-FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
                   NV++ L+  KG  ++   E++E M+      D  TY   I + A     + A
Sbjct: 148 PQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEA 207

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
            +LF +MK  N  P    + +L+D  GKAG  + +  V  EM+  G  P+   Y  L+ +
Sbjct: 208 TELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSA 267

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           + +AG  + A  + D M   G  P+   +T ++ +++++GK++ AM I+  M  +   P 
Sbjct: 268 FGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPN 327

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             T++ L+ MH  +      M ++  M + G+ P + T+ +LL    K  +     K+  
Sbjct: 328 SFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFR 387

Query: 505 EMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
            MK  G+  D +  ++L+  Y + GS D AL     M  +G   +      L  +  +  
Sbjct: 388 GMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREG 447

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVL 591
            +E A+ +L+    S+ K + + Y S+L
Sbjct: 448 RWEHAELILDELNRSSYKPNDIAYASML 475



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 174/404 (43%), Gaps = 4/404 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           + S   P    Y  L DV  ++  ++   ++  EM    S   +     YN ++    +A
Sbjct: 215 KSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEM---ESAGCLPNIVTYNELLSAFGRA 271

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
                +      ++    + D  +Y  L++ +   G   +A EIY  M    C+ +  T+
Sbjct: 272 GLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTF 331

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I    K+      + +F++M+     P    + SL+ + GK G     +KV+  M+ 
Sbjct: 332 NALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKK 391

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P    +  LIE+Y + G  D AL ++D M  AG  P+   F  ++ + A+ G+ + 
Sbjct: 392 AGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEH 451

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  I  ++ R+ + P    Y+ +L  +A+ G+++   ++ +++ +  +          + 
Sbjct: 452 AELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVL 511

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT 547
           + +K  LVD A    L M+  GY  D S  + ++ +Y K G +D A      + S+G+  
Sbjct: 512 VYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEP 571

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +      L     +  +Y   +  L   + +    DLV Y +V+
Sbjct: 572 DVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVI 615



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 143/308 (46%), Gaps = 3/308 (0%)

Query: 288 KAFEIYESMEKG-ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
           KA E++  M +      DG T  +M+  L +  +L    +LF+ ++E  +      + SL
Sbjct: 64  KALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSL 123

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK-LDTALRLWDEMRIAG 405
           + ++ +  +   ++  + +M+  G +PS   Y  +I+ Y K G+  +  L L++EM+  G
Sbjct: 124 ISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQG 183

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +P+   +   I + A     + A  +FT M+ +   P   TY+ LL+++  +G  + A 
Sbjct: 184 IQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAA 243

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVY 524
            +   M SAG  P + TY  LL+   +  L + AA++   M + G   DV + + +L  Y
Sbjct: 244 NVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAY 303

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
            + G V+ A+     M +S    N+F    L     KN  +     + E       + D+
Sbjct: 304 SRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDI 363

Query: 585 VLYTSVLA 592
           V + S+L 
Sbjct: 364 VTWNSLLG 371



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/431 (18%), Positives = 173/431 (40%), Gaps = 50/431 (11%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           P++ T    L    +   + QA+++ N             R S   P    +  L  +  
Sbjct: 291 PDVFTYTSLLSAYSRAGKVEQAMEIYNQ-----------MRTSNCTPNSFTFNALIGMHG 339

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           ++++F  M+ +F++M     +  I     +N ++    K          F+ +  +  + 
Sbjct: 340 KNKNFSEMMVIFEDMQACGVEPDIV---TWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEP 396

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  ++N+L+  +   G   +A  IY+ M +  C+ D +T+  ++ +LA+ GR + A  + 
Sbjct: 397 DKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELIL 456

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRL-------------------------------- 356
            E+   +++P+   +AS++ +    G L                                
Sbjct: 457 DELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKC 516

Query: 357 ---DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
              D +   ++ M+  G+      + ++I  Y K G +D A   +  +R  G  P+   +
Sbjct: 517 SLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTY 576

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             ++  + + G      +   +   AG  P   +Y+ ++  ++  GQ+ SA ++++ M S
Sbjct: 577 NCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVS 636

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
            G++P   TY   +       +   A  ++  M   G   D V+   ++  Y K G  + 
Sbjct: 637 NGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEE 696

Query: 533 ALRWLRFMGSS 543
             R L+F+ SS
Sbjct: 697 VERILKFIKSS 707


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 170/369 (46%), Gaps = 16/369 (4%)

Query: 226 DSSKNGI--SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           D    GI  S+F+ YN +I YL K   LEM+   F ++ ++    D  +YN L+      
Sbjct: 46  DMGAAGIKRSVFT-YNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKL 104

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           GL  +   I+E M+  +C  D  TY  +I    K  R+  A +   EMK    +P+   +
Sbjct: 105 GLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTY 164

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
           ++ +D+  K G L  ++K +++M+     P+   Y SLI++  KAG L  AL+L +E+  
Sbjct: 165 STFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQ 224

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
           AG + N   +T +++   + G++  A  +F  M  AG  P   TY+ L+     + +++ 
Sbjct: 225 AGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEY 284

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM- 522
           A  +   M    ++P L  Y  +L  L     ++ A  ++ E+K  G + +      LM 
Sbjct: 285 AKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMD 344

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            Y K G    AL  L  M              L +   KN  +E AK L +  ++     
Sbjct: 345 AYFKSGQATEALTLLEEM------------LDLVDGLCKNNCFEVAKKLFDEMLDKGMMP 392

Query: 583 DLVLYTSVL 591
           D + YT+++
Sbjct: 393 DKIAYTALI 401



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 166/340 (48%), Gaps = 1/340 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++  L+K  + ++S   FK +  +  K    +YN+++     +G    A  ++  M++
Sbjct: 25  NALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKE 84

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              + D  TY  +I    K G LD  I +F++MK+ +  P    + +L++   K  R+  
Sbjct: 85  AGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPK 144

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           + +   EM+  G +P+   Y + I+++ K G L  A++ + +MR     PN   +T +I+
Sbjct: 145 AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLID 204

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           ++ K+G L  A+ +  ++ +AG      TY+ LL+     G++  A +++ +M +AG+ P
Sbjct: 205 ANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP 264

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWL 537
              TYTAL+    K K ++ A  IL EMK      D+     +L     +  ++ A   +
Sbjct: 265 NQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLI 324

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
             +  SGI TN  I   L ++  K+     A  LLE  ++
Sbjct: 325 GEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD 364



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 131/282 (46%), Gaps = 1/282 (0%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++  L+K GR D + K F++M     + S   +  ++D + K G L+ +  ++ +M+  G
Sbjct: 27  LLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAG 86

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P    Y SLI+ + K G LD  + ++++M+ A   P+   +  +I    K  ++  A 
Sbjct: 87  FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAF 146

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
               +M+  G  P   TYS  ++     G +  A+K +  M    L P   TYT+L+   
Sbjct: 147 EFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDAN 206

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K   +  A K++ E+   G  ++V     L+  + ++G +  A    R M ++G+  N 
Sbjct: 207 CKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQ 266

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                L    +K    E AK +L+   E   K DL+LY ++L
Sbjct: 267 ETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 308



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 157/405 (38%), Gaps = 62/405 (15%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D L +  D +   SLF +M        I     YN +I    K   L+   C F+
Sbjct: 59  YNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIV---TYNSLIDGHGKLGLLDECICIFE 115

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++ D+DC  D  +YN L+  F       KAFE    M+      +  TY   I +  K G
Sbjct: 116 QMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEG 175

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            L  AIK F +M+     P+   + SL+D+  KAG L  ++K+  E+   G + +   Y 
Sbjct: 176 MLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYT 235

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER- 438
           +L++   + G++  A  ++  M  AG  PN   +T ++    K+ +++ A  I  +M+  
Sbjct: 236 ALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK 295

Query: 439 ----------------------------------AGFLPTPSTYSCLLEMHASSGQVDSA 464
                                             +G       Y+ L++ +  SGQ   A
Sbjct: 296 CIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEA 355

Query: 465 M-----------------------KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +                       KL++ M   G+ P    YTAL+    K   +  A  
Sbjct: 356 LTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALN 415

Query: 502 ILLEMKTMGYSVDVSASDVLMVYIK-DGSVDHALRWLRFMGSSGI 545
           +   M  +G  +D+ A   L+  +   G V  A   L  M   G+
Sbjct: 416 LRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGV 460



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 135/288 (46%), Gaps = 1/288 (0%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L+ A + F +M++    P      +L+  + K GR D S K + +M   G + S   Y  
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           +I+   K G L+ A  L+ +M+ AGF P+   +  +I+ H K G LD  + IF  M+ A 
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY+ L+       ++  A +  + M + GL+P + TY+  +    K  ++  A 
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 501 KILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           K  ++M+ +  +  + + + ++    K G++  AL+ +  +  +GI+ N      L +  
Sbjct: 182 KFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGL 241

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
            +    + A+ +    + +    +   YT+++   ++ ++ +  + ++
Sbjct: 242 CEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDIL 289



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 140/319 (43%), Gaps = 26/319 (8%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+    P +  Y  L D   ++ +    L L +E++    K  +  ++A   ++  L + 
Sbjct: 188 RRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTA---LLDGLCEE 244

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            +++ +   F+ +L++    + ++Y  L+  F+       A +I + M++     D   Y
Sbjct: 245 GRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLY 304

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR------------- 355
             ++  L    RL+ A  L  E+KE     +  I+ +L+D+  K+G+             
Sbjct: 305 GTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD 364

Query: 356 ----------LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
                      + + K++ EM   G  P    Y +LI+   K G L  AL L D M   G
Sbjct: 365 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIG 424

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
              +   +T +I   + SG++  A ++  +M   G LP    Y CL++ + + G+VD A+
Sbjct: 425 MELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEAL 484

Query: 466 KLYNSMTSAGLRPGLSTYT 484
           +L N M   G+  GLS + 
Sbjct: 485 ELQNEMAKRGMITGLSDHA 503


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 174/357 (48%), Gaps = 1/357 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           VI  L  + ++  +   F+++ D+  K  T++YN L+  ++  G+   A  I   ME+  
Sbjct: 297 VISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSG 356

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            S D  TY L+I + + +GR ++A  + +EM+  N  P+  +F+ ++ S    G    S 
Sbjct: 357 VSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSF 416

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +V  EM+  G RP    Y  +I+++ K   LD A+  +D+M   G +P+   +  +I+ H
Sbjct: 417 QVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCH 476

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K+   + A  +F +M   GF P  +T++ ++       + D    L  +M S GL P +
Sbjct: 477 CKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNV 536

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRF 539
            TYT L+ +  K      A + L +MK+ G     +  + L+  Y + G  + A+   R 
Sbjct: 537 VTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRL 596

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           M +  ++ +   +  L  +  ++     A  +L+   E+  K D+V YT+++  L+R
Sbjct: 597 MRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIR 653



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 147/334 (44%), Gaps = 4/334 (1%)

Query: 194 VPGDEC-YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           V  DEC Y +L D  + +  ++    +  EM  ++      +FS   R++       + +
Sbjct: 357 VSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFS---RILASYRDRGEWQ 413

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            S+   K++ +S  + D   YNV++  F        A + ++ M       D  T+  +I
Sbjct: 414 KSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLI 473

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
               K+   + A +LF+EM E+ F P    F  +++S G+  R D    +   M+  G  
Sbjct: 474 DCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLL 533

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y +LI+ Y K+G+   A+   ++M+ AG +P+  ++  +I ++A+ G  + A++ 
Sbjct: 534 PNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNA 593

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  M      P+    + L+       +   A  +   M    L+P + TYT L+  L +
Sbjct: 594 FRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIR 653

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK 526
               +    +  EM   G + D  A  +L   +K
Sbjct: 654 VDKFNKVPSVYEEMILAGCTPDRKARAMLRSALK 687



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 131/287 (45%), Gaps = 2/287 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN-VLMTLFLNKGLPYKAFE-IYES 295
           YN +I   A+ + LE +     ++       D  +Y+ ++ +L  +  +     + +Y  
Sbjct: 187 YNALINACARNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSE 246

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ++  +  LD      +I   AK+G  + A++    ++     P      +++ ++G +GR
Sbjct: 247 IQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGR 306

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  +  ++ EM+  G +P    Y  L++ Y KAG L  A  +  EM  +G  P+   +++
Sbjct: 307 IIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSL 366

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I++++ +G+ + A  +  +ME    +P    +S +L  +   G+   + ++   M ++G
Sbjct: 367 LIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSG 426

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           +RP    Y  ++    K   +D A     +M + G   D    + L+
Sbjct: 427 VRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLI 473


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 173/379 (45%), Gaps = 21/379 (5%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           F+   ++  EM+   SK  I   S Y++VI YL  A K+E ++  F+++  +    D  +
Sbjct: 103 FEKAYNVIREMM---SKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYT 159

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y  L+  F   GL  +A   ++ M++  C+ +  TY  +I +  K+ +L  A ++F+ M 
Sbjct: 160 YTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMML 219

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG-----------------HRPSA 375
                P+   + +L+D   KAG  + + ++Y  M+                      P+ 
Sbjct: 220 SNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNV 279

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y +L++   KA K+  A  L + M + G  PN  ++  +I+   K GKLD A  +FT 
Sbjct: 280 VTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTK 339

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M   G  P   TYS L++      ++D A+K+   M      P +  YT ++  L K   
Sbjct: 340 MLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGK 399

Query: 496 VDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
            D A +++L M+  G Y   V+ + ++  + K G VD  L  L+ M S G   N    R 
Sbjct: 400 TDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRV 459

Query: 555 LFESCMKNALYESAKPLLE 573
           L   C    L + A  LLE
Sbjct: 460 LINHCCAAGLLDDAHKLLE 478



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 153/347 (44%), Gaps = 21/347 (6%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           + +  LF+  KR     P    Y  L D   +    +   + FDEM  D     +  ++A
Sbjct: 139 EKAFQLFQEMKRNG-ITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTA 197

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
              +I    K  KL  +   F+ +L + C  +  +Y  L+      G   KA +IY  M+
Sbjct: 198 ---LIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMK 254

Query: 298 KGECSL-----------------DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
             +  +                 +  TY  ++  L K+ ++  A  L + M      P+ 
Sbjct: 255 NDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQ 314

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
            I+ +L+D   K G+LD + +V+ +M G G  P+   Y SLI+   K  +LD AL++  +
Sbjct: 315 IIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTK 374

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M      PN  ++T +++   K GK D A  +   ME  G  P   TY+ +++    +G+
Sbjct: 375 MLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGR 434

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           VD  ++L   MTS G  P   TY  L+       L+D A K+L EMK
Sbjct: 435 VDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMK 481



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 140/318 (44%), Gaps = 19/318 (5%)

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           I E M KG    D STY  +I  L  + +++ A +LFQEMK     P    + +L+D   
Sbjct: 110 IREMMSKGFIP-DSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFC 168

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K G ++ +   + EMQ  G  P+   Y +LI +Y K  KL  A  +++ M   G  PN  
Sbjct: 169 KVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIV 228

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGF-----------------LPTPSTYSCLLEM 454
            +T +I+ H K+G+ + A  I+  M+                      P   TY  L++ 
Sbjct: 229 TYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDG 288

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              + +V  A  L  +M+  G  P    Y AL+    K   +D A ++  +M   G S +
Sbjct: 289 LCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPN 348

Query: 515 V-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           V + S ++    KD  +D AL+ L  M  +    N  I  ++ +   K    + A  L+ 
Sbjct: 349 VYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLML 408

Query: 574 TYVESAAKVDLVLYTSVL 591
              E     ++V YT+++
Sbjct: 409 MMEEKGCYPNVVTYTAMI 426



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 140/315 (44%), Gaps = 18/315 (5%)

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L   G+ + A  + +EM  + F P  + ++ ++  +  A +++ + +++ EM+  G  P
Sbjct: 96  CLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITP 155

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y +L++ + K G ++ A   +DEM+  G  PN   +T +I ++ K+ KL  A  IF
Sbjct: 156 DVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIF 215

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL----------------- 476
             M   G +P   TY+ L++ H  +G+ + A ++Y  M +  +                 
Sbjct: 216 EMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELK 275

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P + TY AL+  L K   V  A  +L  M   G   +    D L+  + K G +D A  
Sbjct: 276 EPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQE 335

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M   G   N +    L +   K+   + A  +L   +E++   ++V+YT ++  L 
Sbjct: 336 VFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLC 395

Query: 596 RCQDEQNERHLMAIL 610
           +         LM ++
Sbjct: 396 KVGKTDEAYRLMLMM 410



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 129/284 (45%), Gaps = 36/284 (12%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEIYESM 296
           Y+ +I    K  KL+ +   F K+L   C  +  +Y+ L+  LF +K L   A ++   M
Sbjct: 317 YDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDL-ALKVLTKM 375

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C+ +   Y  M+  L K G+ D A +L   M+E+   P+   + +++D  GKAGR+
Sbjct: 376 LENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRV 435

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR-------------- 402
           D  +++   M   G  P+   Y  LI     AG LD A +L +EM+              
Sbjct: 436 DRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKV 495

Query: 403 IAGFR-------------------PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           I GF                    P   ++ ++I++  K+G+L++A+ +  ++       
Sbjct: 496 IEGFSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFS-AA 554

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             +TY  L+E    + +VD A KLY+ MT  G  P LS    L+
Sbjct: 555 YQNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLI 598



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 140/313 (44%), Gaps = 34/313 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++  L KA K++ +    + +    C+ +   Y+ L+  F   G   +A E++  M
Sbjct: 281 TYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKM 340

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               CS +  TY  +I  L K  RLD A+K+  +M E +  P+  I+  +VD + K G+ 
Sbjct: 341 LGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKT 400

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++ + M+  G  P+   Y ++I+ + KAG++D  L L   M   G  PNF  + ++
Sbjct: 401 DEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVL 460

Query: 417 IESHAKSGKLDIAMSIFTDMERA---------------------------------GFLP 443
           I     +G LD A  +  +M++                                  G +P
Sbjct: 461 INHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSEDGSVP 520

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
               Y  L++    +G+++ A++L+  ++S       +TY +L+  L     VD A K+ 
Sbjct: 521 ILPVYKLLIDNFIKAGRLEMALELHEELSSFS-AAYQNTYVSLIESLTLACKVDKAFKLY 579

Query: 504 LEMKTMGYSVDVS 516
            +M   G+  ++S
Sbjct: 580 SDMTRRGFVPELS 592



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 139/314 (44%), Gaps = 41/314 (13%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           P    Y  L D   +    D    +F +M+ H  S N       Y+ +I  L K  +L++
Sbjct: 312 PNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPN----VYTYSSLIDKLFKDKRLDL 367

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     K+L++ C  +   Y  ++      G   +A+ +   ME+  C  +  TY  MI 
Sbjct: 368 ALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMID 427

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM------- 366
              K+GR+D  ++L Q M  +   P+F  +  L++    AG LD + K+  EM       
Sbjct: 428 GFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPK 487

Query: 367 ---------QGCGHR-----------------PSAPMYVSLIESYAKAGKLDTALRLWDE 400
                    +G  H                  P  P+Y  LI+++ KAG+L+ AL L +E
Sbjct: 488 HIGMYRKVIEGFSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEE 547

Query: 401 MRIAGFRPNF-GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           +  + F   +   +  +IES   + K+D A  +++DM R GF+P  S   CL++     G
Sbjct: 548 L--SSFSAAYQNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVG 605

Query: 460 QVDSAMKLYNSMTS 473
           + + A++L +S+  
Sbjct: 606 KWEEALQLSDSICQ 619



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 7/238 (2%)

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT---- 393
           PS  IF SLV +  ++G    + K+  +M  CG++P   +Y  LI        L +    
Sbjct: 9   PSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVI 68

Query: 394 --ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A R ++EM   G   N              GK + A ++  +M   GF+P  STYS +
Sbjct: 69  GLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKV 128

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +    ++ +V+ A +L+  M   G+ P + TYT LL    K  L++ A     EM+  G 
Sbjct: 129 IGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGC 188

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           + +V     L+  Y+K   +  A      M S+G   N      L +   K    E A
Sbjct: 189 APNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKA 246



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 9/235 (3%)

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
           M  +GC   PS  ++ SL+ +Y ++G    A +L  +M I G++P + ++ ++I     +
Sbjct: 2   MITEGC--YPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICST 59

Query: 424 GKL------DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             L       +A   + +M   G +                G+ + A  +   M S G  
Sbjct: 60  EDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFI 119

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRW 536
           P  STY+ ++  L     V+ A ++  EMK  G + DV + + +L  + K G ++ A  W
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNW 179

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              M   G   N      L  + +K      A  + E  + +    ++V YT+++
Sbjct: 180 FDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALI 234


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 176/378 (46%), Gaps = 8/378 (2%)

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VHDSS 228
           AL++    + +L+L RWA  +           M+   L      D +  L DEM +   S
Sbjct: 28  ALELSGHWEWALALLRWASDEG--AADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGS 85

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY- 287
           +  +    AY  V+  L++A + E +   F ++          +YNV++ ++   G  + 
Sbjct: 86  RLDVR---AYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWP 142

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +   + E M       D  T   +I +  + G LD A+  F+++K R   P    + +L+
Sbjct: 143 RIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALL 202

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
              GKAG    +++V  EM+  G +P A  Y  L  +YA+AG  + A +  D M   G  
Sbjct: 203 QVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLL 262

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           PN   +  ++ ++A  G++D A+++F  M++ G++P  +TY+ +  M     +  + +++
Sbjct: 263 PNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEM 322

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIK 526
              M+ +G  P   T+  +L +  KR + D   ++L  MK+ G  +     + L+  Y +
Sbjct: 323 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 382

Query: 527 DGSVDHALRWLRFMGSSG 544
            GS  +A +    M SSG
Sbjct: 383 CGSRTYAFKMYDEMISSG 400



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 180/415 (43%), Gaps = 5/415 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +++ F   K +  +VP    Y  L  V  ++ ++   L +  EM  DS     ++   
Sbjct: 177 DQAVAFFEDLKARG-HVPCVVTYNALLQVFGKAGNYTEALRVLKEM-EDSGCQPDAV--T 232

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +    A+A   E +  C   +       +T +YN +MT + N G   +A  +++ M+
Sbjct: 233 YNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMK 292

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K     + +TY L+   L K  R  A +++ +EM      P+   + +++   GK G  D
Sbjct: 293 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 352

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              +V   M+ CG   S   Y +LI +Y + G    A +++DEM  +GF P    +  ++
Sbjct: 353 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 412

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              ++ G    A SI + M + GF P   +YS LL+ +A  G       +   +    + 
Sbjct: 413 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 472

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P       L+    K + ++   K   E+K  GY  D V  + +L +Y K+G    A   
Sbjct: 473 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 532

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              +  SG+  +      L +   K+     A+ +L+    S  K D+V Y +V+
Sbjct: 533 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI 587



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 135/310 (43%), Gaps = 3/310 (0%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           ++DEM+   S       + YN ++  L++      +     K+L +  K + QSY++L+ 
Sbjct: 392 MYDEMI---SSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQ 448

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +   G       I + +  G           ++ +  K  RL+   K FQE+K + ++P
Sbjct: 449 CYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKP 508

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
              IF S++    K G    + +++  ++  G  P    Y SL++ YAK+ +   A ++ 
Sbjct: 509 DLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKIL 568

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
            +++ +  +P+   +  +I    K G +  A  I ++M   G  P   TY  L+  +AS 
Sbjct: 569 KQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASL 628

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
              + A ++ N M    L+P   TY  ++    K K  D A + L E+     + D    
Sbjct: 629 EMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKLQ 688

Query: 519 DVLMVYIKDG 528
            +L   IKD 
Sbjct: 689 HMLEARIKDA 698



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 153/369 (41%), Gaps = 33/369 (8%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +  A   +   D +L+LF   K+   YVP    Y ++F +L +   F  ML + +EM   
Sbjct: 271 VMTAYANVGRVDEALALFDRMKKNG-YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRS 329

Query: 227 S---------------SKNGISLF-----------------SAYNRVIQYLAKADKLEMS 254
                            K G+  +                   YN +I    +      +
Sbjct: 330 GCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYA 389

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +  + +++ S       +YN L+ +   +G    A  I   M K     +  +Y L++  
Sbjct: 390 FKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQC 449

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            AK G       + +E+      PS+ I  +LV +  K  RL+   K + E++  G++P 
Sbjct: 450 YAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPD 509

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
             ++ S++  YAK G    A  ++D ++ +G  P+   +  +++ +AKS +   A  I  
Sbjct: 510 LVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILK 569

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            ++ +   P   +Y+ ++      G +  A ++ + M + G+ P + TY  L+   A  +
Sbjct: 570 QLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLE 629

Query: 495 LVDVAAKIL 503
           + + A +++
Sbjct: 630 MFNEAREVV 638


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 193/416 (46%), Gaps = 8/416 (1%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS---DTS 180
           G+K    + +   +++    R+    ++  +++     P +V  T  ++V+ D+     +
Sbjct: 243 GVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDA 302

Query: 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNR 240
             +F W  + S   P    Y+ L D   +S D   ++ +++ MV D   + I    +Y  
Sbjct: 303 KDVF-WKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIV---SYTA 358

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           V+  L +  +L+ +   F ++ +     +  SYN L++ FL   +  +A E++  M    
Sbjct: 359 VVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACG 418

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            S +G T+ L I    KSG+   AI+ ++ MK +   P      +++ S+ ++GRL  + 
Sbjct: 419 PSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAK 478

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +V+ E++  G  P    Y  +I+  +KA K D A+  + +M   G  P+      +I++ 
Sbjct: 479 RVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTL 538

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K GK + A  +F  ++     PT  TY+ LL      G+V   M L   MT +   P L
Sbjct: 539 YKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNL 598

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALR 535
            TY  +L  L+K   V+ A  +L  M   G + D+S+ + +M   IK+   + A R
Sbjct: 599 ITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFR 654



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 176/403 (43%), Gaps = 4/403 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L     + RD D +L L +EM     K  +    +Y   I+ L +A + + +
Sbjct: 211 PSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVY---SYTICIRVLGQAARFDEA 267

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           Y    K+ DS CK D  ++ V++ +  + G    A +++  M+  +   D  TY  ++  
Sbjct: 268 YQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDK 327

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
              SG   + ++++  M    +  +   + ++VD++ + GRLD ++ V+ EM+  G  P 
Sbjct: 328 CGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPE 387

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y SLI  + KA   D AL L++ M   G  PN     + I  + KSG+   A+  + 
Sbjct: 388 QYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYE 447

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M+  G +P  +  + +L   A SG++  A +++  +   G+ P   TYT ++   +K  
Sbjct: 448 HMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKAS 507

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
             D A     +M   G   DV A + L+    K G  + A +    +    I   N    
Sbjct: 508 KADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYN 567

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            L     +    +    LLE    S    +L+ Y +VL  L +
Sbjct: 568 TLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSK 610



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/508 (20%), Positives = 201/508 (39%), Gaps = 46/508 (9%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L LF  A RQ   V   E    + +++        M  +FD M     K  +  F+   
Sbjct: 91  ALELFTAAARQPTAVHTTESCNYMLELMRAHGRVGDMAQVFDLMQKQIVKANVGTFAT-- 148

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            V   +     L  +      + ++   ++  +YN L+   +  G   +A E+Y++M + 
Sbjct: 149 -VFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVED 207

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP--------------------S 339
             S    TY +++ S  K   +D  + L  EM+ R  +P                    +
Sbjct: 208 GISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEA 267

Query: 340 FNIFASLVDSMGK---------------AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
           + I   + DS  K               AGRL  +  V+ +M+    +P    Y++L++ 
Sbjct: 268 YQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDK 327

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
              +G   + + +W+ M   G+  N   +T ++++  + G+LD A+++F +M+  G  P 
Sbjct: 328 CGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPE 387

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             +Y+ L+     +   D A++L+N M + G  P   T+   +    K      A +   
Sbjct: 388 QYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYE 447

Query: 505 EMKTMGYSVDVSASD-VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
            MK+ G   DV+A++ VL    + G +  A R    +   G+  +      + + C K +
Sbjct: 448 HMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKAS 507

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL-----SATKHKAH 618
             + A       VE+    D++   S++  L +         L   L       T    +
Sbjct: 508 KADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYN 567

Query: 619 AFLCGLFTGPEQRKQPVLSFVREFFHGI 646
             L GL  G E + + V+  + E  H I
Sbjct: 568 TLLSGL--GREGKVKEVMHLLEEMTHSI 593



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 154/317 (48%), Gaps = 1/317 (0%)

Query: 241  VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
            +I++L K  K   ++  F K       + T SYN L+   +++ L   A +++  M++  
Sbjct: 744  LIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLG 803

Query: 301  CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            C  D  TY L++ ++ KS R++  +++  EM  + +  ++  + +++  + K+ RL+ ++
Sbjct: 804  CGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAI 863

Query: 361  KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             +Y  +   G  P+   Y  L++   KAGK+  A  L++EM   G +PN  ++ +++  H
Sbjct: 864  DLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGH 923

Query: 421  AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
              +G  +    IF  M   G  P   +Y+ L++   ++G+++  +  +  +   GL P L
Sbjct: 924  RIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDL 983

Query: 481  STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRF 539
              Y  L+  L K + ++ A  +  EMK  G   ++   + L++++ K G    A +    
Sbjct: 984  IIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEE 1043

Query: 540  MGSSGIRTNNFIVRQLF 556
            +   G + N F    L 
Sbjct: 1044 LLIKGWKPNVFTYNALI 1060



 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 156/337 (46%), Gaps = 9/337 (2%)

Query: 178  DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
            D +  LF   KR     P +  Y ++ D + +S   + ML +  EM     K   S +  
Sbjct: 790  DIAEDLFTEMKRLGCG-PDEFTYNLILDAMGKSMRIEEMLRVQAEM---HRKGYESTYVT 845

Query: 238  YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            YN +I  L K+ +LE +   +  ++         +Y  L+   L  G    A  ++  M 
Sbjct: 846  YNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEML 905

Query: 298  KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            +  C  + + Y +++     +G  +   ++F++M E+   P    +  L+D++  AGRL+
Sbjct: 906  EYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLN 965

Query: 358  TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              +  + ++   G  P   +Y  LI+   K+ +++ A+ L++EM+  G  PN   +  +I
Sbjct: 966  DGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLI 1025

Query: 418  ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                K+GK   A  ++ ++   G+ P   TY+ L+  ++ SG  D+A   Y+ +      
Sbjct: 1026 LHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAV---- 1081

Query: 478  PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
             G+S  TAL++ L    L+++A  +  EMK  G   D
Sbjct: 1082 -GVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPD 1117



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 148/305 (48%), Gaps = 2/305 (0%)

Query: 231  GISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
            G+SL   +YN +I+ L   + ++++   F ++    C  D  +YN+++          + 
Sbjct: 768  GVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEM 827

Query: 290  FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
              +   M +        TY  +I  L KS RL+ AI L+  +    F P+   +  L+D 
Sbjct: 828  LRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDG 887

Query: 350  MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
            + KAG++  +  ++ EM   G +P+  +Y  L+  +  AG  +   +++++M   G  P+
Sbjct: 888  LLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPD 947

Query: 410  FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
               +T++I++   +G+L+  +S F  +   G  P    Y+ L++    S +++ A+ L+N
Sbjct: 948  IKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFN 1007

Query: 470  SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
             M   G+ P L TY +L+  L K      AA++  E+   G+  +V   + L+  Y   G
Sbjct: 1008 EMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSG 1067

Query: 529  SVDHA 533
            S D+A
Sbjct: 1068 STDNA 1072



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 146/335 (43%), Gaps = 1/335 (0%)

Query: 261  VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
            +L +DC  D  S++ LM   LNK    K+ E  E++      L+      +I  L K  +
Sbjct: 694  ILKADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKK 753

Query: 321  LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
               A +LF + K          + SL+  +     +D +  ++ EM+  G  P    Y  
Sbjct: 754  ALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNL 813

Query: 381  LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
            ++++  K+ +++  LR+  EM   G+   +  +  II    KS +L+ A+ ++ ++   G
Sbjct: 814  ILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEG 873

Query: 441  FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
            F PTP TY  LL+    +G++  A  L+N M   G +P  + Y  LL         +   
Sbjct: 874  FSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVC 933

Query: 501  KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +I  +M   G + D+ +  VL+      G ++  L + R +   G+  +  I   L +  
Sbjct: 934  QIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGL 993

Query: 560  MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             K+   E A  L     +     +L  Y S++ HL
Sbjct: 994  GKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHL 1028


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/466 (21%), Positives = 212/466 (45%), Gaps = 5/466 (1%)

Query: 163 KMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDE 222
           ++V+  +AL        +L +F W ++   +         +  VL         L LF+ 
Sbjct: 4   ELVYFVKALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFES 63

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           +  D S + + ++ AY  +I  L++A + +     F+ +     + +  +YNV++ L+  
Sbjct: 64  LKQDESYS-LDVY-AYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGK 121

Query: 283 KGLPYKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
           +G  +   + +++ M+  E S D  TY  MI +  ++     A++LFQEMKE    P+  
Sbjct: 122 RGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRV 181

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            + +L+D  GK G    + ++ +EM+  G  P+   Y  LI +YA+AG  D A  L   +
Sbjct: 182 TYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSL 241

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G  P+   +  +I +  ++ + + A+  FT+M +    P   TY+ L++++    ++
Sbjct: 242 LSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKL 301

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           D  MK++  M      P L T+ +LL       ++   + +  EMK  GY   V   ++L
Sbjct: 302 DDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNIL 361

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  Y + G VD+++   + +  +G++        L  S  +   ++  + + +   E+  
Sbjct: 362 IECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGL 421

Query: 581 KVDLVLYTSVL-AHLVRCQDEQNERHLMAILSATKHKAHAFLCGLF 625
           ++    +  ++ ++    Q  Q  +++  +  + K      LC  F
Sbjct: 422 QLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTF 467



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 179/400 (44%), Gaps = 5/400 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            P +  Y  L    N +  ++  L  F EM   +    I     YN +I    + +KL+ 
Sbjct: 247 CPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIV---TYNILIDIYGRMEKLDD 303

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
               FK + + +C  D  ++N L+  F N G+  +   ++  M++        T+ ++I 
Sbjct: 304 MMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIE 363

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              + G +D ++ +++ +     +P+   FA+L+ S+ + GR     KV  EM   G + 
Sbjct: 364 CYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQL 423

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT-MIIESHAKSGKLDIAMSI 432
           S   +  LI SYA +G+     +  DE+  +  +P  G+     + ++ K    + A   
Sbjct: 424 SDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLA 483

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              +   G  P    ++ ++ M A  G ++ A+KL   +  A L+P   TY  L+++  +
Sbjct: 484 LNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGR 543

Query: 493 RKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
             +   A +++ EM+  G + + ++ + +L  Y K G +D A R    M ++ +R +NF 
Sbjct: 544 EGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFT 603

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              L  S     LY+ A  ++E   E   +   + + ++L
Sbjct: 604 FNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALL 643



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 139/307 (45%), Gaps = 5/307 (1%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           ++FR  KR + Y+PG + + +L +        D  + ++  ++    +  +  F+A   +
Sbjct: 341 NVFREMKR-AGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAA---L 396

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK-GE 300
           +  LA+  + +      +++ ++  ++    +  L+  + N G  ++  +  + +EK  +
Sbjct: 397 MASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAK 456

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
             L G   +  + +  K    + A     ++ +    P   +F +++    K G ++ ++
Sbjct: 457 QPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAV 516

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           K+  E++    +P    Y  L+  Y + G    A  +  EMR AG  PN   +  ++ S+
Sbjct: 517 KLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSY 576

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K G++D A  +F DM  A   P   T++ L+  ++S G    A+ +   MT  G +P  
Sbjct: 577 TKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQ 636

Query: 481 STYTALL 487
            T+ ALL
Sbjct: 637 ITFKALL 643



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 77/152 (50%)

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           S D   +  MI   AK G ++ A+KL +E+++   +P    +  L+   G+ G    + +
Sbjct: 493 SPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEE 552

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           V  EM+  G  P+   Y +L+ SY K G++D A R++ +M  A  RP+   F  ++ S++
Sbjct: 553 VMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYS 612

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
             G    A+S+   M   G  PT  T+  LL+
Sbjct: 613 SLGLYKEALSVIEYMTEHGCQPTQITFKALLD 644



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 4/150 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N +I   AK   +E +    +++  +  K D  +YN LM+++  +G+ +KA E+   M 
Sbjct: 499 FNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMR 558

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +   + +  TY  ++ S  K GR+D A ++F +M     RP    F +LV S    G   
Sbjct: 559 RAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYK 618

Query: 358 TSMKV--YMEMQGCGHRPSAPMYVSLIESY 385
            ++ V  YM   GC  +P+   + +L++ Y
Sbjct: 619 EALSVIEYMTEHGC--QPTQITFKALLDGY 646



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 18/232 (7%)

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
           D C+  L      S  F  +    DE+   S+K  +S       V+ Y           C
Sbjct: 425 DACHAGLIHSYANSGQFFQLRKYIDEL-EKSAKQPLSGILCKTFVLAYCK---------C 474

Query: 257 C--------FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
           C          ++ D+    D + +N ++++   +G   +A ++ E + K +   DG TY
Sbjct: 475 CMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTY 534

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++    + G    A ++  EM+     P+   + +L+ S  K GR+D + +V+ +M  
Sbjct: 535 NCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVA 594

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
              RP    + +L+ SY+  G    AL + + M   G +P    F  +++ +
Sbjct: 595 ARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGY 646


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 174/372 (46%), Gaps = 23/372 (6%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I  L K   ++ +    KK+L+    +D  +YN L++    +G   + F++   M K
Sbjct: 562 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 621

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY L+I  + + G+LD A+ L+ E K R+  P+   +  ++D   KA +++ 
Sbjct: 622 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 681

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
             K++ E+       ++ +Y +LI +Y + G    A +L D+MR  G  P    ++ +I 
Sbjct: 682 GEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIH 741

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
                G+++ A  +  +M + G LP    Y+ L+  +   GQ+D  + +   M+S  + P
Sbjct: 742 GMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHP 801

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWL 537
              TYT ++   +K   +  AAK+L EM   G   D    +VL   + K+G ++      
Sbjct: 802 NKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEG---- 857

Query: 538 RFMGSSGIRTNN--FIVRQLFESCMKN---------------ALYESAKPLLETYVESAA 580
           + +   G+  N+  F++ + F +C +                + Y + KPLL  +  S +
Sbjct: 858 KLLAEDGVGFNSPLFLIHEAFRACTRRVDLWAKKFFANYTNPSSYMTTKPLLVLFGWSIS 917

Query: 581 KVD-LVLYTSVL 591
            V+ L+L   +L
Sbjct: 918 SVECLILLAEIL 929



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 153/357 (42%), Gaps = 2/357 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           ++  L KA++LE SY  F+  +      D   ++  +  F   G    A +++  MEK  
Sbjct: 285 LLSSLVKANELEKSYWVFE-TMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG 343

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            S +  TY  +I  L K G LD A +  ++M +     +   ++ L++ + K  + + + 
Sbjct: 344 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEAN 403

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            V  E    G  P+  +Y +LI+ Y K G L  ALR+  +M   G  PN      II+  
Sbjct: 404 SVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGF 463

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K G+++ A  I  +M   GF   P  ++ ++     + + +SA++    M    +RP  
Sbjct: 464 CKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPND 523

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRF 539
              T L+  L K      A ++   +   G+  ++  ++ L+  + K G++  A+R L+ 
Sbjct: 524 GLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKK 583

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           M   G   +      L   C K    E    L    V+   + D   Y  ++  + R
Sbjct: 584 MLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCR 640



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 158/355 (44%), Gaps = 3/355 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI-YE 294
            A+  +I +L    + E +    +++L  + + +      L+     +G    A E+ + 
Sbjct: 489 GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFR 548

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            +EKG    +  T   +I  L K+G +  A++L ++M ER F      + +L+    K G
Sbjct: 549 LLEKG-FGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEG 607

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           +++   K+  EM   G  P    Y  LI    + GKLD A+ LW+E +     PN   + 
Sbjct: 608 KVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYG 667

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I+ + K+ K++    +FT++           Y+ L+  +  +G    A KL++ M S 
Sbjct: 668 VMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSK 727

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           G+ P  +TY++L+  +     ++ A  ++ EM+  G   +V     L+  Y K G +D  
Sbjct: 728 GIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKV 787

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
           +  L+ M S  I  N      + +   K+   ++A  LL   V      D V Y 
Sbjct: 788 VNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYN 842



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 146/370 (39%), Gaps = 4/370 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L   L +  + D      ++MV D      +    Y+ +I  L K +K   +
Sbjct: 346 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN---ATLITYSVLINGLMKLEKFNEA 402

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               K+ L+     +   YN L+  +   G    A  I   M     + +  T   +I  
Sbjct: 403 NSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQG 462

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K G+++ A  + +EM  R F  +   F +++  +    R +++++   EM     RP+
Sbjct: 463 FCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPN 522

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
             +  +L+    K GK   A+ LW  +   GF  N      +I    K+G +  A+ +  
Sbjct: 523 DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 582

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   GF+    TY+ L+      G+V+   KL   M   G+ P   TY  L+  + +  
Sbjct: 583 KMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIG 642

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +D A  +  E K+     +V    V++  Y K   ++   +    + +  +  N+ +  
Sbjct: 643 KLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYN 702

Query: 554 QLFESCMKNA 563
            L  +  +N 
Sbjct: 703 TLIRAYCRNG 712



 Score = 40.4 bits (93), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 2/136 (1%)

Query: 224 VHDSSKN-GISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           +HD  ++ GI   +A Y+ +I  +    ++E + C   ++       +   Y  L+  + 
Sbjct: 720 LHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYC 779

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
             G   K   + + M   +   +  TY +MI   +KSG +  A KL  EM  +   P   
Sbjct: 780 KLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV 839

Query: 342 IFASLVDSMGKAGRLD 357
            +  L +   K G+++
Sbjct: 840 TYNVLTNGFCKEGKIE 855


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 187/435 (42%), Gaps = 19/435 (4%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-------- 227
           D   +L  F+WA  Q  +    E Y ++  ++  +R +        E++ +S        
Sbjct: 142 DPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPV 201

Query: 228 ---------SKN-GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
                    ++N  +S    ++ +     +   LE +  CF ++ +       +S N L+
Sbjct: 202 CNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLL 261

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                 G      + +  M     +    TY +MI  L K G L+ + +LF +M+E    
Sbjct: 262 HRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLS 321

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P    + SL+D  GK G L+    ++ EM+  G  P    Y  LI  Y K  K+  A   
Sbjct: 322 PDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY 381

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           + EM+  G +PN   ++ +I++  K G +  A+ +F DM R G LP   TY+ L++ +  
Sbjct: 382 FSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCK 441

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           +G +  A KL N M  AG++  + TYTALL  L K   +  A ++   M   G S +   
Sbjct: 442 AGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQV 501

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
              L+  YIK   ++ A++ L+ M    I+ +  +   +          E  K +LE   
Sbjct: 502 YTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMK 561

Query: 577 ESAAKVDLVLYTSVL 591
                 + V+ T+++
Sbjct: 562 SRGISANPVISTTII 576



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 177/365 (48%), Gaps = 2/365 (0%)

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           S+F+ YN +I YL K   LE S   F ++ +     D  +YN L+  +   G   +   +
Sbjct: 288 SVFT-YNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 346

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  M+   C  D  TY  +I    K  ++  A + F EMK    +P+   +++L+D+  K
Sbjct: 347 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 406

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G +  ++K++++M+  G  P+   Y SLI++  KAG L  A +L ++M  AG + N   
Sbjct: 407 EGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVT 466

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +T +++   K+G++  A  +F  M + G  P    Y+ L+  +  + +++ AMK+   MT
Sbjct: 467 YTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMT 526

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVD 531
              ++P L  Y +++     ++ ++    IL EMK+ G S + V ++ ++  Y K G   
Sbjct: 527 ECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSS 586

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            AL + + M   G+         L +   K  + E A       +    + ++ +YTS++
Sbjct: 587 DALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLI 646

Query: 592 AHLVR 596
             L +
Sbjct: 647 DGLCK 651



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 193/451 (42%), Gaps = 72/451 (15%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+    P    Y  L D   +    + + SLF+EM        +     YN +I    K 
Sbjct: 316 REMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM---KDVGCVPDIITYNGLINCYCKF 372

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI---------------Y 293
           +K+  ++  F ++ ++  K +  +Y+ L+  F  +G+   A ++               Y
Sbjct: 373 EKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTY 432

Query: 294 ESMEKGECS--------------------LDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
            S+    C                     L+  TY  ++  L K+GR+  A ++F+ M +
Sbjct: 433 TSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK 492

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P+  ++ +LV    KA R++ +MK+  +M  C  +P   +Y S+I  +    KL+ 
Sbjct: 493 DGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEE 552

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
              + +EM+  G   N  + T II+++ K+GK   A++ F +M+  G   T  TY  L++
Sbjct: 553 TKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLID 612

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
               +G V+ A+  +  M S GL+P ++ YT+L+  L K   ++ A K+  EM+  G + 
Sbjct: 613 GLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTP 672

Query: 514 DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           D++A   L+    DG++ H                                 + A  L+ 
Sbjct: 673 DITAFTALI----DGNLKH------------------------------GNLQEALVLIS 698

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
              E A + DL +YTS+++   +C +    R
Sbjct: 699 RMTELAIEFDLHVYTSLVSGFSQCGELHQAR 729



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 136/291 (46%), Gaps = 1/291 (0%)

Query: 221 DEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           +E+     K+GIS     Y  ++    KA+++E +    K++ + + K D   Y  ++  
Sbjct: 484 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 543

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
             ++    +   I E M+    S +      +I +  K+G+   A+  FQEM++     +
Sbjct: 544 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEAT 603

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              +  L+D + KAG ++ ++  +  M   G +P+  +Y SLI+   K   +++A +L+D
Sbjct: 604 IVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFD 663

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           EM+  G  P+   FT +I+ + K G L  A+ + + M           Y+ L+   +  G
Sbjct: 664 EMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCG 723

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           ++  A K +N M   G+ P       LL    KR  +D A ++  EM+ MG
Sbjct: 724 ELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMG 774



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 91/197 (46%)

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           +   G    A   ++ M+         TY ++I  L K+G ++ A+  F  M     +P+
Sbjct: 579 YFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPN 638

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
             ++ SL+D + K   ++++ K++ EMQ  G  P    + +LI+   K G L  AL L  
Sbjct: 639 VAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLIS 698

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            M       +  ++T ++   ++ G+L  A   F +M   G LP      CLL  +   G
Sbjct: 699 RMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRG 758

Query: 460 QVDSAMKLYNSMTSAGL 476
           Q+D A++L N M   GL
Sbjct: 759 QLDEAIELKNEMERMGL 775



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 94/207 (45%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I    KA K   +   F+++ D   +    +Y VL+      G+   A + +  M    
Sbjct: 575 IIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLG 634

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              + + Y  +I  L K+  +++A KLF EM+ R   P    F +L+D   K G L  ++
Sbjct: 635 LQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEAL 694

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            +   M          +Y SL+  +++ G+L  A + ++EM   G  P   L   ++  +
Sbjct: 695 VLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREY 754

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPST 447
            K G+LD A+ +  +MER G +   +T
Sbjct: 755 YKRGQLDEAIELKNEMERMGLITESAT 781


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 148/616 (24%), Positives = 251/616 (40%), Gaps = 84/616 (13%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D  ++  D+   L +F EM+    S + I+    +N +I    +A++ E     F
Sbjct: 192 YNAVIDACSKGGDYPTALRIFREMLEQGMSPDRIT----FNTLISAAGRANRWEECDRIF 247

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLA 316
            ++ +     D  +YN L+  +   G  +    + E+M K    ++ S  TY  MI   A
Sbjct: 248 AEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSS-GIEPSVITYSTMIDGYA 306

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           K G    AI LFQEM+ +N  P    + ++VD   + G  D +  +   M+  G      
Sbjct: 307 KLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIV 366

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +L++SY K GK   A+ L +EM+  G  PN   ++ +I+++ K G    AM++F D+
Sbjct: 367 TYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDV 426

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK---- 492
           ++AG  P    YS L++    +G  D A+ L   M   G+RP + TY +LL    +    
Sbjct: 427 KKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLM 486

Query: 493 -RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
            RK        LL   TM          +L   ++D                        
Sbjct: 487 VRKTFPKLRFFLLPRVTM----------LLKPSMQDDQ---------------------- 514

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
            + L +   K AL  +A  +     ++  K ++V ++S+L     C   ++  +L+  + 
Sbjct: 515 -QSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASNLLEAMR 573

Query: 612 ATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQ 671
               + +    GL  G   R   V       F+ +   L    A  F N L + L    Q
Sbjct: 574 VFDGRVYGVTHGLLMGFRIR---VWRDAETLFNELT-TLGHNTAVAFYNALTDVLWHFEQ 629

Query: 672 INRA--RCVWKVAY---ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKR 726
              A  R VW  A+   E + F             LD+  +SVG+A  A++H    + ++
Sbjct: 630 AQAAKDRHVWDKAWWHSEQQFF-------------LDLHFMSVGSAQ-AMLHLWLLYIRK 675

Query: 727 MLYY--GVVPRRIKLVTG----------PTLKIVIAQMLSSVESPFEV---SKVVLRAPG 771
            L     V+P+ + ++TG            +K  +   L  + SPF V   ++  L   G
Sbjct: 676 FLCQRRSVLPKYMSILTGWGKHSKVPGESAVKRAVEAHLLEMNSPFHVWGNNEGRLVCAG 735

Query: 772 DSVMEWFKKPIVQQFL 787
             V  W      Q+ L
Sbjct: 736 YQVQGWLMDTRTQRHL 751


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/500 (24%), Positives = 202/500 (40%), Gaps = 52/500 (10%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+  I+   KA   + +   F+++   DC ++  +YNV+++     G   +AF   E M 
Sbjct: 246 YSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMV 305

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               S D  TY  ++  L K  RL  A  L  EM     +P+  ++ +LVD   K G+  
Sbjct: 306 DYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTA 365

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  +  EM   G +P+  MY +LI    K G+L  A +L  EM   G RP+   +  ++
Sbjct: 366 EAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLM 425

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           + H +    D A  +  +M  +G LP   +Y  ++     +G+   A  L   M S GL+
Sbjct: 426 QGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLK 485

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV---------------------- 515
           P    Y  L+   +K   + +A + L +M       D+                      
Sbjct: 486 PNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEY 545

Query: 516 --------------SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
                         + S ++  Y K G+++ A + LR M +SG++ N      L E   K
Sbjct: 546 YAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFK 605

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK------- 614
           +  YE    +L++ + S  K D  +Y  V+ +L R   E  E   M +    K       
Sbjct: 606 SNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR--SENMEVAFMVLTEVEKNGLVPDL 663

Query: 615 HKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINR 674
           H   + + GL    +  K   +  + E        LE G   Y  N L++     G I+R
Sbjct: 664 HIYSSLISGLCKIADMEK--AVGLLDEM---AKEGLEPGIVCY--NALIDGFCRSGDISR 716

Query: 675 ARCVWKVAYENKLFPKAIVF 694
           AR V+       L P  + +
Sbjct: 717 ARNVFDSILAKGLVPNCVTY 736



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 129/289 (44%), Gaps = 1/289 (0%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY   I +  K+   DAA K+F+EM+ R+   +   +  ++  + ++G ++ +     EM
Sbjct: 245 TYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEM 304

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G  P A  Y +L+    K  +L  A  L DEM  +G +PN  ++  +++   K GK 
Sbjct: 305 VDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKT 364

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A  I  +M  AG  P    Y  L+      GQ+  A KL   M   GLRP   TY  L
Sbjct: 365 AEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPL 424

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGI 545
           +    ++   D A ++L EM+  G   +V +  +++  + ++G    A   L  M S G+
Sbjct: 425 MQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGL 484

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           + N F+   L     K      A   LE   ++    DL  Y S++  L
Sbjct: 485 KPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGL 533



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 173/398 (43%), Gaps = 5/398 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           +D D +  L     R S  +P    Y ++ + L ++ +     +L +EM+ +  K    +
Sbjct: 432 HDKDGAFELLN-EMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFM 490

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           ++    +I   +K   + ++    +K+  ++   D   YN L+      G   +A E Y 
Sbjct: 491 YAP---LIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYA 547

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            ++K     D  TY  +I    K+G L+ A +L ++M     +P+ + +  L++   K+ 
Sbjct: 548 QVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSN 607

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
             +    +   M G G +P   +Y  +I + +++  ++ A  +  E+   G  P+  +++
Sbjct: 608 DYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYS 667

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K   ++ A+ +  +M + G  P    Y+ L++    SG +  A  +++S+ + 
Sbjct: 668 SLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAK 727

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHA 533
           GL P   TYTAL+    K   +  A  +  EM   G + D    +VL     D + ++ A
Sbjct: 728 GLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQA 787

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
           L     M + G    +     +   C +  L E+ K L
Sbjct: 788 LFLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLL 825



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 150/345 (43%), Gaps = 5/345 (1%)

Query: 214 DGMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           +G +SL  E +   +K  +   LF  YN +I+ L+   ++E +   + +V       D  
Sbjct: 501 EGNISLACEALEKMTKANVHPDLF-CYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEF 559

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y+ L+  +   G   KA ++   M       +  TY  ++    KS   +    + Q M
Sbjct: 560 TYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSM 619

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
                +P  +I+  ++ ++ ++  ++ +  V  E++  G  P   +Y SLI    K   +
Sbjct: 620 LGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADM 679

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A+ L DEM   G  P    +  +I+   +SG +  A ++F  +   G +P   TY+ L
Sbjct: 680 EKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTAL 739

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++ +  +G +  A  LY  M   G+ P    Y  L T  +    ++ A  +  EM   GY
Sbjct: 740 IDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY 799

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           + +VS  + L+  + K G +    + L  M    I  N   V ++
Sbjct: 800 A-NVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKV 843



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 116/277 (41%), Gaps = 1/277 (0%)

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           + R+  PS  +   LVD+  K G +  + +V + M   G  P+      L++   +A  +
Sbjct: 165 RSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAM 224

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           +   +L   M  AG  P+   ++  IE+H K+   D A  +F +M R        TY+ +
Sbjct: 225 ELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVM 284

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +     SG V+ A      M   GL P   TY AL+  L K   +  A  +L EM   G 
Sbjct: 285 ISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGL 344

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             ++     L+  ++K+G    A   L+ M S+G++ N  +   L     K      A  
Sbjct: 345 KPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASK 404

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           LL+  ++   + D   Y  ++    +  D+     L+
Sbjct: 405 LLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELL 441



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 136/317 (42%), Gaps = 1/317 (0%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           +  ++++ +  K+G +  A ++   M +    P+      L+  + +A  ++   K+   
Sbjct: 174 AVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGF 233

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M+G G  P    Y + IE++ KA   D A ++++EMR      N   + ++I    +SG 
Sbjct: 234 MEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 293

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           ++ A     +M   G  P   TY  L+       ++  A  L + M+ +GL+P +  Y  
Sbjct: 294 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGT 353

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSG 544
           L+    K      A  IL EM + G   +    D L+  + K G +  A + L+ M   G
Sbjct: 354 LVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVG 413

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
           +R + F    L +   +    + A  LL     S    ++  Y  ++  L +  + +   
Sbjct: 414 LRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAG 473

Query: 605 HLMAILSATKHKAHAFL 621
           +L+  + +   K +AF+
Sbjct: 474 NLLEEMISEGLKPNAFM 490



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 19/255 (7%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
            ++  VP    Y  L   L +  D +  + L DEM  +  + GI     YN +I    ++
Sbjct: 655 EKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIV---CYNALIDGFCRS 711

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             +  +   F  +L      +  +Y  L+      G    AF++Y+ M     + D   Y
Sbjct: 712 GDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVY 771

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            ++    + +  L+ A+ L +EM  R +  + ++F +LV    K G+L  + K+   M  
Sbjct: 772 NVLATGCSDAADLEQALFLTEEMFNRGY-ANVSLFNTLVHGFCKRGKLQETEKLLHVMMD 830

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
               P+A     ++  + KAGKL  A R++ E++               +  A     D 
Sbjct: 831 REIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQ---------------QKKASQSATDR 875

Query: 429 AMSIFTDMERAGFLP 443
              +FTDM   G +P
Sbjct: 876 FSLLFTDMINKGLIP 890



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 12/220 (5%)

Query: 153 TQLDKLQFVPKMVHI----TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           T+++K   VP + HI       L  I D + ++ L     ++    PG  CY  L D   
Sbjct: 652 TEVEKNGLVPDL-HIYSSLISGLCKIADMEKAVGLLDEMAKEGLE-PGIVCYNALIDGFC 709

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
            S D     ++FD ++   +K  +     Y  +I    K   +  ++  +K++LD     
Sbjct: 710 RSGDISRARNVFDSIL---AKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAP 766

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
           D   YNVL T   +     +A  + E M  +G  ++  S +  ++    K G+L    KL
Sbjct: 767 DAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANV--SLFNTLVHGFCKRGKLQETEKL 824

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
              M +R   P+      +V   GKAG+L  + +V+ E+Q
Sbjct: 825 LHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQ 864


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 198/420 (47%), Gaps = 13/420 (3%)

Query: 184 FRWAKRQSWY---VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNR 240
           F   KR  +Y   +    C  ++  +L ++R  D +  L+ EM+    +  +  F   N 
Sbjct: 173 FEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSAD-VEYLYKEMIRRKIQPNVFTF---NV 228

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL---NKGLPYKAFEIYESME 297
           VI  L K  K+  +    + +       +  SYN L+  +      G  YKA  + + M 
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           + E S + +T+ ++I    K   L  ++K+F+EM +++  P+   + SL++ +   G+++
Sbjct: 289 ENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKIN 348

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  +M   G +P+   Y SLI  + K G +  AL ++D ++  G RP   ++ M+I
Sbjct: 349 EAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLI 408

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +++ K GK+D   ++  +MER G +P   TY+CL+     +G +++A KL++ +T+ GL 
Sbjct: 409 DAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL- 467

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P L T+  L+     R     AA +L EM  MG        +++M  Y K+G++  A   
Sbjct: 468 PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNM 527

Query: 537 LRFMGSS-GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
              M     +R N      L +   +    E A  LL   +E     + + Y  V   +V
Sbjct: 528 RTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMV 587



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/449 (22%), Positives = 190/449 (42%), Gaps = 41/449 (9%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS----DTSLSLFRW-AKR 189
           VA I +++ +  W         KL F  K ++  +  + +  S    D  L  + W  K 
Sbjct: 43  VAVIADLIEKQHW--------SKLGFHVKDINPNELFRQLISSELNPDLCLRYYTWLVKN 94

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKA 248
           +   V  +  + +L  + N  R +  + S  D  V + S + + S+F A           
Sbjct: 95  RDISVSLELTFKLLHSLANAKR-YSKIRSFLDGFVRNGSDHQVHSIFHA----------- 142

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
               +S C      D+ C +++   ++L+  + N       FE ++        L   + 
Sbjct: 143 ----ISMC------DNVC-VNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSC 191

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
           + ++ +L K  R      L++EM  R  +P+   F  +++++ K G+++ +  V  +M+ 
Sbjct: 192 KPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKV 251

Query: 369 CGHRPSAPMYVSLIESYAK---AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
            G+ P+   Y +LI+ Y K    GK+  A  +  EM      PN   F ++I+   K   
Sbjct: 252 YGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDN 311

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           L  ++ +F +M     +P   TY+ L+    + G+++ A+ + + M SAG++P L TY +
Sbjct: 312 LPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHS 371

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG 544
           L+    K  ++  A  +   +K  G        ++L+  Y K G +D        M   G
Sbjct: 372 LINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG 431

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLE 573
           I  +      L     +N   E+AK L +
Sbjct: 432 IVPDVGTYNCLIAGLCRNGNIEAAKKLFD 460



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 125/297 (42%), Gaps = 7/297 (2%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           SL +F+    Q   +P    Y  L + L      +  + + D+MV    +  +     Y+
Sbjct: 315 SLKVFKEMLDQD-VIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLI---TYH 370

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I    K   ++ +   F  V     +  T+ YN+L+  +   G     F + E ME+ 
Sbjct: 371 SLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMERE 430

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY  +I  L ++G ++AA KLF ++  +   P    F  L++     G    +
Sbjct: 431 GIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKA 489

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFTMIIE 418
             +  EM   G +P    Y  +++ Y K G L  A  +  +M +    R N   + ++++
Sbjct: 490 AMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQ 549

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV-DSAMKLYNSMTSA 474
            +++ GKL+ A  +  +M   G +P   TY  + E     G V D    L+N  T +
Sbjct: 550 GYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKGFVPDIEGHLFNVSTKS 606


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 218/477 (45%), Gaps = 8/477 (1%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSD--TSL 181
           G+K    + +   +++    R+     +  +++     P +V  T  ++V+ D+   +  
Sbjct: 236 GVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDA 295

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
               W  + S   P    Y+ L D   +S D   ++ +++ MV D   + I    +Y  V
Sbjct: 296 KAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIV---SYTAV 352

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           +  L +  +++ +   F ++ +     +  SYN L++ FL   +  +A E++  M     
Sbjct: 353 VDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGP 412

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           S +G T+ L I    KSG+   AI+ ++ MK +   P      +++ S+  +GRL  + +
Sbjct: 413 SPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKR 472

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           V+ E++  G  P    Y  +I+  +KA K D A+  + +M  +G  P+      +I++  
Sbjct: 473 VFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLY 532

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           K GK + A  +F  ++     PT  TY+ LL      G+V   M+L   MT     P L 
Sbjct: 533 KGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLI 592

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFM 540
           TY  +L  L+K   V+ A  +L  M   G + D+S+ + +M   IK+  ++ A R    M
Sbjct: 593 TYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQM 652

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV-ESAAKVDLVLYTSVLAHLVR 596
               +  +   +  +  S +KN L + A   ++ Y+ ++   VD   + S++  +++
Sbjct: 653 KKI-LAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILK 708



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/439 (22%), Positives = 189/439 (43%), Gaps = 41/439 (9%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L     + RD D +L L +EM     K  +    +Y   I+ L +A + + +
Sbjct: 204 PSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVY---SYTICIRVLGQAARFDEA 260

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-------------- 300
           Y    K+ DS CK D  ++ V++ +  + G    A  ++  M+  +              
Sbjct: 261 YHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDK 320

Query: 301 CSLDGS---------------------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           C   G                      +Y  ++ +L + GR+D A+ +F EMKE+   P 
Sbjct: 321 CGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPE 380

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              + SL+    KA   D +++++  M  CG  P+   +V  I  Y K+G+   A++ ++
Sbjct: 381 QYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYE 440

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            M+  G  P+      ++ S A SG+L +A  +F +++  G  P   TY+ +++  + + 
Sbjct: 441 HMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKAS 500

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           + D AM  ++ M  +G  P +    +L+  L K    + A ++  ++K M         +
Sbjct: 501 KADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYN 560

Query: 520 VLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM-KNALYESAKPLLETYVE 577
            L+  + ++G V   ++ L  M +  I   N I       C+ KN     A  +L +  E
Sbjct: 561 TLLSGLGREGKVKEVMQLLEEM-TRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTE 619

Query: 578 SAAKVDLVLYTSVLAHLVR 596
                DL  Y +V+  L++
Sbjct: 620 KGCAPDLSSYNTVMYGLIK 638



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 144/285 (50%)

Query: 241  VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
            +I++L K  K   ++  F K       + T SYN L+   +++ L   A +++  M++  
Sbjct: 737  LIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLG 796

Query: 301  CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            C  D  TY L++ ++ KS R++  +K+ +EM  + +  ++  + +++  + K+ RL+ ++
Sbjct: 797  CGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAI 856

Query: 361  KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             +Y  +   G  P+   Y  L++   K+GK+  A  L++EM   G  PN  ++ +++  H
Sbjct: 857  DLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGH 916

Query: 421  AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
              +G  +    +F  M   G  P   +Y+ L++   ++G+++  +  +  +   GL P L
Sbjct: 917  RIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDL 976

Query: 481  STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
              Y  L+  L K + ++ A  +  EMK  G   ++   + L++++
Sbjct: 977  IVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHL 1021



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 144/309 (46%), Gaps = 4/309 (1%)

Query: 178  DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
            D +  LF   KR     P +  Y ++ D + +S   + ML +  EM     K   S +  
Sbjct: 783  DIAEDLFTEMKRLGC-GPDEFTYNLILDAMGKSMRVEEMLKVQKEM---HRKGYESTYVT 838

Query: 238  YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            YN +I  L K+ +LE +   +  ++         +Y  L+   L  G    A  ++  M 
Sbjct: 839  YNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEML 898

Query: 298  KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            +  C  + + Y +++     +G  +   +LF++M E+   P    +  L+D++  AGRL+
Sbjct: 899  EYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLN 958

Query: 358  TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              +  + ++   G  P   +Y  LI+   K+ +++ A+ L++EM+  G  PN   +  +I
Sbjct: 959  DGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLI 1018

Query: 418  ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                K+GK   A  ++ ++ R G+ P+  TY+ L+  ++ SG  D+A   Y  M   G +
Sbjct: 1019 LHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQ 1078

Query: 478  PGLSTYTAL 486
            P  STY  L
Sbjct: 1079 PNSSTYMQL 1087



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 154/327 (47%), Gaps = 2/327 (0%)

Query: 231  GISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
            G+SL   +YN +I+ L   + ++++   F ++    C  D  +YN+++          + 
Sbjct: 761  GVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEM 820

Query: 290  FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
             ++ + M +        TY  +I  L KS RL+ AI L+  +    F P+   +  L+D 
Sbjct: 821  LKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDG 880

Query: 350  MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
            + K+G++  +  ++ EM   G  P+  +Y  L+  +  AG  +   +L+++M   G  P+
Sbjct: 881  LLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPD 940

Query: 410  FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
               +T++I++   +G+L+  +  F  +   G  P    Y+ L++    S +++ A+ L+N
Sbjct: 941  IKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFN 1000

Query: 470  SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
             M   G+ P L TY +L+  L K      AA++  E+   G+   V   + L+  Y   G
Sbjct: 1001 EMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSG 1060

Query: 529  SVDHALRWLRFMGSSGIRTNNFIVRQL 555
            S D+A      M   G + N+    QL
Sbjct: 1061 STDNAYAAYGQMIVGGCQPNSSTYMQL 1087



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 165/381 (43%), Gaps = 6/381 (1%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +   L+   D   +L LF  A RQ   V   E    + +++        M  +FD M   
Sbjct: 71  VVHMLRSAPDPAEALELFTAAARQPTKVHTTESCNYMLELMRAHGRVGDMAQVFDLMQKQ 130

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
             K  +  F+    +   +     L  +      + ++   ++  +YN L+   +  G  
Sbjct: 131 VVKTNVGTFAT---IFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFLVKSGFD 187

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +A E+Y++M +   S    TY +++ +  K   +D  + L  EM+ R  +P+   +   
Sbjct: 188 AEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTIC 247

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +  +G+A R D +  +  +M+  G +P    +  +I+    AG+L  A  ++ +M+ +  
Sbjct: 248 IRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQ 307

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
           +P+   +  +++    SG     + ++  M   G+     +Y+ +++     G+VD A+ 
Sbjct: 308 KPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALA 367

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV--Y 524
           +++ M   G+ P   +Y +L++   K  + D A ++   M   G S +   + VL +  Y
Sbjct: 368 VFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPN-GYTHVLFINYY 426

Query: 525 IKDGSVDHALRWLRFMGSSGI 545
            K G    A++    M S GI
Sbjct: 427 GKSGQSLKAIQRYEHMKSKGI 447



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 125/256 (48%), Gaps = 1/256 (0%)

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +   SL+  TY  +I  L KSG    A+++++ M E    PS   ++ L+ + GK   
Sbjct: 162 MREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRD 221

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +DT + +  EM+  G +P+   Y   I    +A + D A  +  +M  +G +P+    T+
Sbjct: 222 VDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTV 281

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           II+    +G+L  A ++F  M+ +   P   TY  LL+    SG   S ++++N+M + G
Sbjct: 282 IIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADG 341

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHAL 534
               + +YTA++  L +   VD A  +  EMK  G S +  S + ++  ++K    D AL
Sbjct: 342 YNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRAL 401

Query: 535 RWLRFMGSSGIRTNNF 550
                M + G   N +
Sbjct: 402 ELFNHMNACGPSPNGY 417



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/441 (21%), Positives = 179/441 (40%), Gaps = 39/441 (8%)

Query: 190  QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
            ++ Y P    Y  + D L+++ + +  + +   M   + K      S+YN V+  L K +
Sbjct: 584  RTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSM---TEKGCAPDLSSYNTVMYGLIKEE 640

Query: 250  KLEMSY---CCFKKVLDSD--------------------------------CKIDTQSYN 274
            +LE ++   C  KK+L  D                                C +D  S++
Sbjct: 641  RLEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFH 700

Query: 275  VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
             LM   L K    K+ E  E++      L+      +I  L K  +   A +LF + K  
Sbjct: 701  SLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGL 760

Query: 335  NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
                    + SL+  +     +D +  ++ EM+  G  P    Y  ++++  K+ +++  
Sbjct: 761  GVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEM 820

Query: 395  LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            L++  EM   G+   +  +  II    KS +L+ A+ ++ ++   GF PTP TY  LL+ 
Sbjct: 821  LKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDG 880

Query: 455  HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
               SG++  A  L+N M   G  P  + Y  LL         +   ++  +M   G + D
Sbjct: 881  LLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPD 940

Query: 515  VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            + +  +L+      G ++  L + R +   G+  +  +   L +   K+   E A  L  
Sbjct: 941  IKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFN 1000

Query: 574  TYVESAAKVDLVLYTSVLAHL 594
               +     +L  Y S++ HL
Sbjct: 1001 EMKKKGIIPNLYTYNSLILHL 1021


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 146/584 (25%), Positives = 242/584 (41%), Gaps = 45/584 (7%)

Query: 220  FDEMVH----DSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYN 274
            F E  H    D+ ++GI L     RVI   A    KL        K L     ID + +N
Sbjct: 725  FPETAHRLMDDALQSGIPLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQASGIDRRIWN 784

Query: 275  VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
             L+  +   GL  KA  ++++M K        +   M+ +L   GRLD    + +E+++ 
Sbjct: 785  ALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDM 844

Query: 335  NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
            NF+ S +    L+D+  KAG +   MK+Y  M+  G+ P+  +Y S+I       +    
Sbjct: 845  NFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDV 904

Query: 395  LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              +  EM  AGF+P+  +   ++  +  +G  D    ++  +  AG  P   TY+ L+ M
Sbjct: 905  ELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVM 964

Query: 455  HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
            +  S + +    L N M   GL P L +Y +LL   AK +L + A +I  EM++  Y ++
Sbjct: 965  YCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLN 1024

Query: 515  VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
             S   ++M +Y   G+   A   L  M   GI      +  L  S         A+ +L 
Sbjct: 1025 RSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLN 1084

Query: 574  TYVESAAKVDLVLYTSVLAHLVRC-------------------QDEQNERHLMAILSATK 614
                S+ +V  + Y++V    ++                     D Q     +   S  +
Sbjct: 1085 NLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCE 1144

Query: 615  HKAHAFL-------CGLFTGP----EQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLL 663
              A A L       CG F  P     +R   +LS +  +   ++  LE+ AA  FVN + 
Sbjct: 1145 QTADAILLLKSLQDCG-FDLPIRLLTERTPSLLSEIANYLEELE-ALEDSAALNFVNAVE 1202

Query: 664  NYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRF 723
            + L        A  ++++A E  ++   +       W  D R LS GAAL+ +   L   
Sbjct: 1203 DLLWAFECRATASRIFQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVGLTLWLDHM 1262

Query: 724  RKRMLYYG-VVPRRIKLVTGP------TLKIVIAQMLSSVESPF 760
            +   L      P+ + LVTG       +L+  I   L  + SPF
Sbjct: 1263 QDASLQGSPESPKSVVLVTGEGEYNMVSLRKTIRAYLLEMGSPF 1306



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 170/356 (47%), Gaps = 6/356 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ESM 296
           YN +I   +++  LE +   F+ ++ S+C+ D  +YN ++++    G   +A  ++ E +
Sbjct: 296 YNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELV 355

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           EKG    D  TY  ++ + AK G +D      +++ +  F+ +   + +++   GK GRL
Sbjct: 356 EKGFMP-DAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRL 414

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ +Y EM+  G  P A  Y  +I+S  K  ++  A ++ ++M  AG +P    F+ +
Sbjct: 415 DLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSAL 474

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++AK G+   A + F  M  +G  P    Y  +L++ A SG  +  + LY  M +   
Sbjct: 475 ICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNY 534

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
           RP    Y  LL  LAK    +   +++ +M+ +     ++   +  + IK   V    + 
Sbjct: 535 RPDDDMYQVLLVALAKEDKCEEIEEVIQDMELL---CRMNLGIISTMLIKARCVSQGAKL 591

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA-KVDLVLYTSVL 591
           L+     G + +   +R +  + +    +E    LLE   E  +   DL+   S++
Sbjct: 592 LKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECICEHVSFSQDLISECSIM 647



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 149/323 (46%), Gaps = 17/323 (5%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           L D +++ R  D  L  F+ +++  SK+G             LA    L++ +    +V 
Sbjct: 243 LLDTMHD-RGIDPDLVSFNTLINARSKSGC------------LAAGVALDLLF----EVR 285

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
            S  + D  +YN L++          A  ++E M   EC  D  TY  M+    + G+ +
Sbjct: 286 QSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAE 345

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A +LF+E+ E+ F P    + SL+ +  K G +D       ++   G + +   Y ++I
Sbjct: 346 EAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMI 405

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
             Y K G+LD A+ L+DEMR  G  P+   +T++I+S  K  ++  A  +  DM  AG  
Sbjct: 406 HMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLK 465

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           PT   +S L+  +A  G+   A   ++ M ++G++P    Y  +L + A+    +    +
Sbjct: 466 PTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCL 525

Query: 503 LLEMKTMGYSVDVSASDVLMVYI 525
             +M    Y  D     VL+V +
Sbjct: 526 YRKMMNDNYRPDDDMYQVLLVAL 548



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 140/304 (46%), Gaps = 6/304 (1%)

Query: 304 DGSTYEL---MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL--DT 358
           +G+T ++   M+   A+SGR D A +L   M +R   P    F +L+++  K+G L    
Sbjct: 217 EGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGV 276

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++ +  E++  G RP    Y +LI + +++  L+ A+ ++++M  +  RP+   +  ++ 
Sbjct: 277 ALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVS 336

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
            H + GK + A  +F ++   GF+P   TY+ LL   A  G VD        +  AG + 
Sbjct: 337 VHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKK 396

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
              TY  ++ +  K   +D+A  +  EM+ MG + D     V++  + K   +  A + L
Sbjct: 397 NEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVL 456

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             M  +G++        L  +  K      A+   +  + S  K D + Y  +L    R 
Sbjct: 457 EDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARS 516

Query: 598 QDEQ 601
            D +
Sbjct: 517 GDTE 520



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 125/264 (47%), Gaps = 5/264 (1%)

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R+  P+    A ++  +G+A +   + +V++   G G   +  ++ +++  YA++G+ D 
Sbjct: 182 RSSAPASRAVAVVLGVLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDD 239

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL--DIAMSIFTDMERAGFLPTPSTYSCL 451
           A +L D M   G  P+   F  +I + +KSG L   +A+ +  ++ ++G  P   TY+ L
Sbjct: 240 ARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTL 299

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +   + S  ++ A+ ++  M ++  RP L TY A++++  +    + A ++  E+   G+
Sbjct: 300 ISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGF 359

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D ++ + +L  + K+G+VD        +  +G + N      +     K    + A  
Sbjct: 360 MPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVG 419

Query: 571 LLETYVESAAKVDLVLYTSVLAHL 594
           L +         D V YT ++  L
Sbjct: 420 LYDEMRAMGCTPDAVTYTVMIDSL 443



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/290 (18%), Positives = 131/290 (45%), Gaps = 9/290 (3%)

Query: 189  RQSWYVPGDECYVMLFDVL---NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245
            + + Y+P    Y  +  +L   N  RD + M++   EM     K  +++ +A   ++   
Sbjct: 877  KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIA---EMEGAGFKPDLAILNA---LLNMY 930

Query: 246  AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
              A   + +   ++ +L++  + D  +YN L+ ++     P + F +   M K   +   
Sbjct: 931  TAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKL 990

Query: 306  STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
             +Y+ ++ + AK+   + A ++F+EM+ ++++ + +I+  ++     AG    +  +   
Sbjct: 991  QSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAV 1050

Query: 366  MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
            M+  G  P+      L+ SY  AG+   A  + + ++ +    +   ++ + +++ K+G 
Sbjct: 1051 MKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGD 1110

Query: 426  LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
             +   +   +M+R G  P    ++C +   +   Q   A+ L  S+   G
Sbjct: 1111 YNHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDCG 1160


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 142/600 (23%), Positives = 263/600 (43%), Gaps = 44/600 (7%)

Query: 223  MVHDSSKNGISLFSAYNRVIQYLAKADKLEM--SYCCFKKVLDSDC-KIDTQSYNVLMTL 279
            +++ + KN I L +    +I  +    KL+M  S     + L   C K+D + +N L+  
Sbjct: 774  LLYHAEKNDIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHA 833

Query: 280  FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
            +   G   +A  I+ +M +   S    +   ++ +L   GRL     + QE+++ + + S
Sbjct: 834  YAFSGCYERARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKIS 893

Query: 340  FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
             +    ++++  +AG L    KVY  M+  G+ P+  +Y  +I    +  ++     +  
Sbjct: 894  KSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLS 953

Query: 400  EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            EM  AGF+P+  +F  +++ ++   +      I+  ++ AG  P   TY+ L+ M+    
Sbjct: 954  EMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDH 1013

Query: 460  QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
            + +  + L + M S GL P   TY +++   +K++L D A ++  E+++ GY +D S   
Sbjct: 1014 RPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYH 1073

Query: 520  VLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
            ++M +Y   G    A   L  M  +GI  N   +  L  S  K+   E A  +L+     
Sbjct: 1074 LMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTM 1133

Query: 579  AAKVDLVLYTSVLAHLVRCQD---------EQNERHL------------MAILSATKHKA 617
             A +D + Y+SV+   ++  D         E  E  +             A LS   + A
Sbjct: 1134 GAVLDTLPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDA 1193

Query: 618  HAFLCGL----FTGP----EQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLM 669
            +  L  L    F  P     ++ + ++S V +    +++ +E+ AA  FVN L++ L   
Sbjct: 1194 NNLLNALQAVGFDLPIRLLGEKSESLVSEVDQCLGRLEH-VEDNAAFNFVNALVDLLWAF 1252

Query: 670  GQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLY 729
                 A  V+++A +  ++   I       W  D R LS G+AL+ +   L   +   L 
Sbjct: 1253 ELRATASWVFQLAIKRSIYRHDIFRVAQKDWGADFRKLSAGSALVGLTLWLDHMQDASLQ 1312

Query: 730  -YGVVPRRIKLVTGP------TLKIVIAQMLSSVESPFEVSKV---VLRAPGDSVMEWFK 779
             Y   P+ + L+TG       +L   +   L  + SPF   K    VL A   S+  W K
Sbjct: 1313 GYPESPKSVVLITGTAEYNMVSLDSTLKAFLWEMGSPFLPCKTRHGVLVAKAHSLRMWLK 1372



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 146/308 (47%), Gaps = 3/308 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I   ++   L+ +   F  +  + C+ D  +YN +++++   G   KA  ++E +
Sbjct: 338 TYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKL 397

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +    S D  TY  ++ + +K G  +    + +EM +  F      + +++   GK GR 
Sbjct: 398 KSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRH 457

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++++Y +M+  G  P A  Y  LI+   KA K++ A ++  EM  AG +P    ++ +
Sbjct: 458 DEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSAL 517

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++AK G+   A   F  M  +G       YS +L+      ++  A  LY  M  AG 
Sbjct: 518 ICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGF 577

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
            P    Y  +L  L +  + DV  +++ + K +G    ++  D+  V +K G  DH  + 
Sbjct: 578 TPDTGLYEVMLPALVRENMGDVIERVVQDTKELG---SMNPHDISSVLVKGGCYDHGAKM 634

Query: 537 LRFMGSSG 544
           L+   S+G
Sbjct: 635 LKVAISNG 642



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 166/359 (46%), Gaps = 4/359 (1%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           ++  L KA++  ++   F K  +S      Q YN +M ++   G   K  E++  M +  
Sbjct: 236 ILSVLGKANQEGIAVEIFAKA-ESVIADTVQVYNAMMGVYARNGNFEKVNEMFNLMRERG 294

Query: 301 CSLDGSTYELMIPSLAKSGRLDA--AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
           C  D  ++  +I +  KS    +  AI+L  E+ +   RP    + +L+ +  +   L  
Sbjct: 295 CEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGKFGLRPDIITYNTLISACSRESNLKE 354

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++ V+  M+    +P    Y ++I  Y + G    A  L+++++  GF P+   +  ++ 
Sbjct: 355 AIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLY 414

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           + +K G  +    I  +M + GF     TY+ ++ M+   G+ D A++LY  M S+G  P
Sbjct: 415 AFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNP 474

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWL 537
              TYT L+ LL K   ++ A+K++ EM   G    + + S ++  Y K G    A    
Sbjct: 475 DAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETF 534

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             M  SGI+ ++     + +  ++    + A  L +  +E+    D  LY  +L  LVR
Sbjct: 535 NRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVR 593



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/389 (18%), Positives = 164/389 (42%), Gaps = 6/389 (1%)

Query: 228  SKNGISLF---SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
            S+ G+  F   + Y  +I    K+++ +++   F  +  +  +     Y  +++++   G
Sbjct: 707  SRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIG 766

Query: 285  LPYKAFEIYESMEKGECSLDGSTYELM--IPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
             P  A  +    EK +  LD  T  ++  I +  K     +A  + + +++R  +    +
Sbjct: 767  FPETAQHLLYHAEKNDIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKV 826

Query: 343  FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
            + +L+ +   +G  + +  ++  M   G  P+      L+++    G+L     +  E++
Sbjct: 827  WNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQ 886

Query: 403  IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
                + +     +++E+ A++G L     ++  M+ AG+ PT   Y  ++ +     +V 
Sbjct: 887  DMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVR 946

Query: 463  SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
                + + M  AG +P L  + ++L L +  +       I   ++  G + D    + L+
Sbjct: 947  DVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLI 1006

Query: 523  -VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             +Y +D   +  L  +  M S G+       R +  +  K  LY+ A+ L E    +  K
Sbjct: 1007 TMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYK 1066

Query: 582  VDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
            +D   Y  ++       D Q   +L+ I+
Sbjct: 1067 LDRSFYHLMMKMYRTSGDHQKAENLLEIM 1095



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 119/301 (39%), Gaps = 42/301 (13%)

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
           I  +L+  + KAG+LD +++ Y    G G   S  MY SLI    K+ + D A +L+ +M
Sbjct: 684 ITEALIIILCKAGKLDAALEEYRSRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDM 743

Query: 402 RIAGFRPNFGLFTM-------------------------------------IIESHAKSG 424
           R  G  P+  L+                                       IIE++ K  
Sbjct: 744 RFNGVEPSECLYQSMVSVYCRIGFPETAQHLLYHAEKNDIILDNVTVHIIDIIETYGKLK 803

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
               A SI  ++ +         ++ L+  +A SG  + A  ++N+M   G  P + +  
Sbjct: 804 MWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVN 863

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV---YIKDGSVDHALRWLRFMG 541
            LL  L     +     ++ E++ M   + +S S +L++   + + G++    +    M 
Sbjct: 864 GLLQALIVDGRLSELYVVIQELQDM--DLKISKSSILLMLEAFAQAGNLFEVQKVYNGMK 921

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
           ++G      + R +     +       + +L    E+  K DL ++ SVL      ++ Q
Sbjct: 922 AAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQ 981

Query: 602 N 602
           N
Sbjct: 982 N 982


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 177/405 (43%), Gaps = 8/405 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKA 248
            S   P    Y  L   L  +  FD    LF +M    ++ G       YN +I    K 
Sbjct: 38  HSGVTPSTVAYTSLIHGLCMANSFDDARELFADM----NRRGCPPSPVTYNVMIDASCKR 93

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             LE +    KK+++     D  +YN +M          +A  ++  ME+  C+ +  ++
Sbjct: 94  GMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSH 153

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I  L +  ++D A ++F EM+ ++  P    +  L+D + KAG+L+ + K++  M  
Sbjct: 154 NTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLD 213

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  PSA  Y  +I     A  LD AL L+  MR  G RP+   F ++I++H K GKLD 
Sbjct: 214 SGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDE 273

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +   M   G +P   TYS L+    S  +VD A  L   M     +P + T   L+ 
Sbjct: 274 AFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIH 333

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT 547
            L K   +  A ++L  M + G S DV   + L+  + + G  + A   L  M + G+  
Sbjct: 334 GLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAP 393

Query: 548 NNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           N      L    C  N L E+   +      S    +L  YT+++
Sbjct: 394 NVVTYTALVSGLCKANRLPEACG-VFAQMKSSGCAPNLFTYTALI 437



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 173/377 (45%), Gaps = 1/377 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  LAKA KL  +   F+K+L S     T +Y  L+           A E++  M
Sbjct: 12  SYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C     TY +MI +  K G L+ A  L ++M E    P    + +++D + K+ R+
Sbjct: 72  NRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRV 131

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + ++ ++ EM+  G  P+   + ++I    +  K+D A +++ EM      P+   + ++
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGIL 191

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+  AK+GKL+ A  +F  M  +G  P+  TY+ ++     +  +D A++L+ SM S G 
Sbjct: 192 IDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGC 251

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALR 535
           RP   T+  L+    KR  +D A ++L  M   G+  DV     L+  +     VD A  
Sbjct: 252 RPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARH 311

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L  M     +        L     K    + A+ +L+  V S    D+V Y +++    
Sbjct: 312 LLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHC 371

Query: 596 RCQDEQNERHLMAILSA 612
           R    +  R L++ + A
Sbjct: 372 RAGQTERARELLSDMVA 388



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 162/358 (45%), Gaps = 7/358 (1%)

Query: 153 TQLDKLQFVP-KMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNES 210
            ++++L   P +  H T  L +   S    +   + + ++  +P D   Y +L D L ++
Sbjct: 139 NEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKA 198

Query: 211 RDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
              +    LF  M+     +GI+  +  YN VI  +  A  L+ +   FK +    C+  
Sbjct: 199 GKLNEAYKLFQRML----DSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPS 254

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             ++N+L+     +G   +AF + + M       D  TY  +I  L    R+D A  L +
Sbjct: 255 RFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           +M +R  +P+     +L+  + KAGR+  + +V   M   G  P    Y +L+  + +AG
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           + + A  L  +M   G  PN   +T ++    K+ +L  A  +F  M+ +G  P   TY+
Sbjct: 375 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYT 434

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
            L+    S+GQVD  +KL+  M  AG+ P    Y  L   L K      A +IL E +
Sbjct: 435 ALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR 492



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 150/317 (47%), Gaps = 9/317 (2%)

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +   S D  +Y ++I  LAK+G+L+ A  LFQ++      PS   + SL+  +  A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            D + +++ +M   G  PS   Y  +I++  K G L+ A  L  +M   G  P+   +  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++   KS +++ A+ +F +MER G  P   +++ ++       ++D A ++++ M +  
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL-----MVYIKDGSV 530
           + P   +Y  L+  LAK   ++ A K+   M   G +      +V+     + Y    ++
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAY----TL 236

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D AL   + M S G R + F    L ++  K    + A  LL+   +     D+V Y+++
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTL 296

Query: 591 LAHLVRCQDEQNERHLM 607
           ++ L       + RHL+
Sbjct: 297 ISGLCSIARVDDARHLL 313



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 150/340 (44%), Gaps = 1/340 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D+ SY +L+      G    A  +++ +     +     Y  +I  L  +   D A +LF
Sbjct: 9   DSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELF 68

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +M  R   PS   +  ++D+  K G L+ +  +  +M   GH P    Y ++++   K+
Sbjct: 69  ADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKS 128

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            +++ AL L++EM   G  PN      II    +  K+D A  +F +ME     P   +Y
Sbjct: 129 SRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSY 188

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             L++  A +G+++ A KL+  M  +G+ P   TY  ++  +     +D A ++   M++
Sbjct: 189 GILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRS 248

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G        ++L+  + K G +D A R L+ M   G   +      L       A  + 
Sbjct: 249 KGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDD 308

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           A+ LLE  V+   K  +V   +++  L +    +  R ++
Sbjct: 309 ARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL 348



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 138/335 (41%), Gaps = 22/335 (6%)

Query: 184 FRWAKRQS--WYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           FR  KR +   +VP    Y  L   L      D    L ++MV    K  +      N +
Sbjct: 275 FRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVV---TQNTL 331

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           I  L KA +++ +      ++ S    D  +YN L+      G   +A E+   M     
Sbjct: 332 IHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGL 391

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           + +  TY  ++  L K+ RL  A  +F +MK     P+   + +L+     AG++D  +K
Sbjct: 392 APNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLK 451

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG--LFTMIIES 419
           ++ EM   G  P   +Y +L     K+G+   AL +  E R +     +G  ++   ++ 
Sbjct: 452 LFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDG 511

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             ++GK+++A+    DM R G LP P   + L+     SGQ   A  +            
Sbjct: 512 LLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEE--------- 562

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
                 ++ L    K    AAK + EM   GY ++
Sbjct: 563 ------IMDLAYGGKARGKAAKFVEEMVGKGYEIE 591


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 198/433 (45%), Gaps = 40/433 (9%)

Query: 111 SVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQA 170
           +V PG     +  G+ +    A  V ++V      +  P     LD L        + + 
Sbjct: 74  TVVPGAAQEGLAPGVSEA---AERVCRVVSAQPEHRIAP----VLDALGVTVSPQLVAEV 126

Query: 171 LKVINDSDT-SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS- 228
           LK ++++   +L+ FRWA+RQ  +    E +  L + L + + F  + SL + M   S  
Sbjct: 127 LKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCL 186

Query: 229 ------------------KNGISLF------------SAYNRVIQYLAKADKLEMSYCCF 258
                             K  +  F            S YN +I  L+K+ +++ ++  F
Sbjct: 187 SKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIF 246

Query: 259 KKVLDSDCKI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           K++      I D ++Y VLM  + ++        +Y+ M       D   Y ++I +  K
Sbjct: 247 KEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCK 306

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           SG+ D AIK+F EM+E    PS +++  L++ +G   RLD ++K +   +  G     P 
Sbjct: 307 SGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPT 366

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
             ++I +Y +A +   A ++ DEMR +G  PN   + +I+    KS K++ A ++F  ME
Sbjct: 367 CNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRME 426

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           R G  P  +TY+ ++ M  S+ +VD A+K++  M   G+ P +  ++AL+  L     ++
Sbjct: 427 RDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLE 486

Query: 498 VAAKILLEMKTMG 510
            A     EM   G
Sbjct: 487 EACVYFQEMLDKG 499



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 154/366 (42%), Gaps = 23/366 (6%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I +L K  +      L + M+ R+   S + F  +V    +A ++  +++ + +M   G
Sbjct: 160 LIEALGKIKQFRLVWSLVEAMRCRSCL-SKDTFKIIVRRYARARKVKEAVETFEKMSSFG 218

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG-FRPNFGLFTMIIESHAKSGKLDIA 429
            +     Y  LI+  +K+ ++  A  ++ EM+  G F P+   +T+++E       L + 
Sbjct: 219 LKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLML 278

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
            +++ +M  AG  P    Y  L+     SG+ D A+K+++ M  +G  P    Y  L+  
Sbjct: 279 KAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLING 338

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
           L   + +D A K     K  G+ ++V + + V+  Y +     HA + +  M  SGI  N
Sbjct: 339 LGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPN 398

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
                 +    +K+   E A  L +       + +L  YT ++          NER  MA
Sbjct: 399 TRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFC-----SNERVDMA 453

Query: 609 ILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYE--LEEGAARYFVNVLLNYL 666
           +    + K    L            P +       +G+ +E  LEE A  YF  +L   +
Sbjct: 454 LKVWKQMKEKGVL------------PCMHMFSALINGLCFENRLEE-ACVYFQEMLDKGI 500

Query: 667 VLMGQI 672
              GQ+
Sbjct: 501 RPPGQL 506



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
           D ++ +F   + +S  +P    Y ML + L      D  L  F      S ++G  +   
Sbjct: 311 DEAIKVFHEME-ESGCMPSPHVYCMLINGLGSMERLDEALKYF----QLSKESGFPMEVP 365

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             N VI    +A +   ++    ++  S    +T++Y++++   +      +A+ +++ M
Sbjct: 366 TCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRM 425

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+  C  + +TY +M+     + R+D A+K++++MKE+   P  ++F++L++ +    RL
Sbjct: 426 ERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRL 485

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
           + +   + EM   G RP   ++ +L E+  + G++  A
Sbjct: 486 EEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLA 523


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 2/334 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R +   P    Y  L      + + DG   +   M  +   N       +N ++  L KA
Sbjct: 179 RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG--NAKPNLVTFNSMVNGLCKA 236

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            ++E +   F +++      D  SYN L++ +   G  +++  ++  M +     D  T+
Sbjct: 237 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTF 296

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I +  K+G L+ A+ L  +M+ER  R +   F +L+D   K G LD ++    EM+ 
Sbjct: 297 TSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 356

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           CG +PS   Y +LI  Y K G++D A  L  EM     +P+   ++ II  + K G LD 
Sbjct: 357 CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDS 416

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +   M + G LP   TYS L+       +++ A +L+ +M   G++P   TYT L+ 
Sbjct: 417 AFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 476

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
              K   V+ A  +  EM   G   DV    VL+
Sbjct: 477 GHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLI 510



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 167/372 (44%), Gaps = 2/372 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM- 296
           YN +++ L    +LE +      +  + C  +  +YN L+  F   G    A  +   M 
Sbjct: 155 YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMR 214

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+G    +  T+  M+  L K+GR++ A K+F EM      P    + +L+    K G L
Sbjct: 215 EEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCL 274

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             S+ V+ EM   G  P    + SLI +  KAG L+ A+ L  +MR  G R N   FT +
Sbjct: 275 HESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTAL 334

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K G LD A+    +M + G  P+   Y+ L+  +   G++D A +L   M +  +
Sbjct: 335 IDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRV 394

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +P + TY+ +++   K   +D A ++  +M   G   D ++ S ++    ++  ++ A  
Sbjct: 395 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 454

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M   G++ + F    L +   K    E A  L +  +      D+V Y+ ++  L 
Sbjct: 455 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLS 514

Query: 596 RCQDEQNERHLM 607
           +    +    L+
Sbjct: 515 KSARTKEAHRLL 526



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 163/332 (49%), Gaps = 5/332 (1%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN ++    +  LP  A     SM +   + +  TY +++ +L   GRL+ A+ +  +M
Sbjct: 120 AYNAVLLALSDASLP-SARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDM 178

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGK 390
           +     P+   + +LV +  +AG LD + +V   M+  G+ +P+   + S++    KAG+
Sbjct: 179 RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 238

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           ++ A +++DEM   G  P+   +  ++  + K G L  ++++F++M + G +P   T++ 
Sbjct: 239 MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 298

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L+     +G ++ A+ L   M   GLR    T+TAL+    K+  +D A   + EM+  G
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 358

Query: 511 YSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
               V   + L+  Y K G +D A   +R M +  ++ +      +     K    +SA 
Sbjct: 359 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 418

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
            L +  ++     D + Y+S++  L  C++++
Sbjct: 419 QLNQKMLKKGVLPDAITYSSLIRGL--CEEKR 448



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 112/274 (40%), Gaps = 18/274 (6%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+    P   CY  L +   +    D    L  EM     K  +     Y+ +I    K 
Sbjct: 355 RKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV---TYSTIISGYCKV 411

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             L+ ++   +K+L      D  +Y+ L+     +     A E++E+M +     D  TY
Sbjct: 412 GNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTY 471

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS----MKVYM 364
             +I    K G ++ A+ L  EM  +   P    ++ L++ + K+ R   +     K+Y 
Sbjct: 472 TTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYH 531

Query: 365 E-----------MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           E           +  C  +      V+L++ +   G +  A +++  M    ++ +  ++
Sbjct: 532 EDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVY 591

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           +++I  H + G +  A+S    M R+GF P  ++
Sbjct: 592 SILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 625



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 18/210 (8%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y  L D   +  + +  LSL DEM+    K  +     Y+ +I  L+K+ + + +
Sbjct: 466 PDEFTYTTLIDGHCKEGNVEKALSLHDEMIR---KGVLPDVVTYSVLINGLSKSARTKEA 522

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTL---------------FLNKGLPYKAFEIYESMEKG 299
           +    K+   D   D   Y+ LM                 F  KGL  +A ++Y+SM   
Sbjct: 523 HRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDR 582

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
              LDGS Y ++I    + G +  A+   ++M    F P+     SLV  + + G +  +
Sbjct: 583 NWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 642

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
                ++  C     A    +LI+   K G
Sbjct: 643 DNAIQDLLTCCPLADAEASKALIDLNRKEG 672


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 196/419 (46%), Gaps = 33/419 (7%)

Query: 125 IKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDT-SLSL 183
           +  P L+ S  A+ V  V      P +   LD L        + + LK ++++   +L+ 
Sbjct: 106 VPGPGLDVSEEAERVCRVLSTLPEPRVPAALDALGASVSPQLVAEVLKNLSNAGILALAF 165

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS--SKNGISL------- 234
           FRWA+RQ  +V   + +  L + L + + F  + SL + M      SK+   L       
Sbjct: 166 FRWAERQQGFVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYAR 225

Query: 235 ----------------------FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI-DTQ 271
                                  S YN +I  L+K+ +++ ++  FK++  +   + D +
Sbjct: 226 ARKVKEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLK 285

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y VLM  + ++        +Y+ M       D   Y ++I S  KSG+ D AIK+F+EM
Sbjct: 286 TYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREM 345

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           +     PS +++  L++ +G   RLD ++K +   +  G     P   +++ +Y ++ K 
Sbjct: 346 ETNGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKF 405

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A ++ DEMR +G  PN   + +I+    KS K++ A ++F  M + G  P  +TY+ +
Sbjct: 406 QHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMM 465

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           + M  S+ +VD A+K++N M   G+ P +  ++AL+  L     ++ A     EM   G
Sbjct: 466 VGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRG 524



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 116/244 (47%), Gaps = 2/244 (0%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           L   T+ L++   A++ ++  A++ F++M     +   + +  L+D + K+ ++  +  +
Sbjct: 211 LSKDTFRLIVRRYARARKVKEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAI 270

Query: 363 YMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           + EM+  G   P    Y  L+E +     L     ++ EM  AG +P+   + M+I S  
Sbjct: 271 FKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFC 330

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           KSGK D A+ +F +ME  G +P+P  Y  L+    S  ++D A+K +    ++G    + 
Sbjct: 331 KSGKCDEAIKVFREMETNGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVP 390

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY-IKDGSVDHALRWLRFM 540
           T  A++    +      A K++ EM+  G   +    D+++ + IK   ++ A    + M
Sbjct: 391 TCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGM 450

Query: 541 GSSG 544
              G
Sbjct: 451 SKDG 454



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 156/370 (42%), Gaps = 23/370 (6%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           ++  +I +L K  +      L + M+ R    S + F  +V    +A ++  +++ + +M
Sbjct: 181 SFHNLIEALGKIKQFRLVWSLVEAMRCRGLL-SKDTFRLIVRRYARARKVKEAVETFEKM 239

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG-FRPNFGLFTMIIESHAKSGK 425
            G G +     Y  LI+  +K+ ++  A  ++ EM+  G F P+   +T+++E       
Sbjct: 240 AGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKD 299

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           L +  S++ +M  AG  P    Y  L+     SG+ D A+K++  M + G  P    Y  
Sbjct: 300 LLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCM 359

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSG 544
           L+  L   + +D A K     K  G+ ++V + + V+  Y +     HA + +  M  SG
Sbjct: 360 LINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKSG 419

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
           I  N+     +    +K+   E A  + +   +   +  L  YT ++          NER
Sbjct: 420 IGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFC-----SNER 474

Query: 605 HLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYE--LEEGAARYFVNVL 662
             +A+    + K    L            P +       +G+ +E  LEE  A YF  +L
Sbjct: 475 VDVALKVWNQMKEKGVL------------PCMHMFSALINGLCFENRLEEACA-YFQEML 521

Query: 663 LNYLVLMGQI 672
              +   GQ+
Sbjct: 522 DRGIRPPGQL 531



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 3/163 (1%)

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +V   +   G   S  +   ++++ + AG L  A   W E R  GF      F  +IE+ 
Sbjct: 131 RVPAALDALGASVSPQLVAEVLKNLSNAGILALAFFRWAE-RQQGFVYTADSFHNLIEAL 189

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K  +  +  S+   M   G L +  T+  ++  +A + +V  A++ +  M   GL+  L
Sbjct: 190 GKIKQFRLVWSLVEAMRCRGLL-SKDTFRLIVRRYARARKVKEAVETFEKMAGFGLKADL 248

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLM 522
           S Y  L+ +L+K K V  A  I  EMK  G  V D+    VLM
Sbjct: 249 SDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLM 291


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 177/396 (44%), Gaps = 2/396 (0%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           +L  + +E+R  +  L L   M  D          +YN V+    K    + +Y  + ++
Sbjct: 169 LLKGLCDENRSQEA-LELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEM 227

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           LD     D  +Y+ ++          KA E+  +M K     D  TY  ++     SG+ 
Sbjct: 228 LDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 287

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             AI   ++M+     P+   ++SL++ + K GR   + K++  M   G  P    Y +L
Sbjct: 288 KEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTL 347

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           ++ YA  G L     L D M   G +P+  +F ++I ++AK  K+D AM +F+ M + G 
Sbjct: 348 LQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P    Y  ++++   SG VD AM  +  M   GL P +  YT+L+  L      D A +
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 502 ILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           ++LEM   G  ++ +  + ++  + K+G V  + +    M   G++ +      L + C 
Sbjct: 468 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCC 527

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                + A  LL + V    K D+V Y +++    R
Sbjct: 528 LAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCR 563



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 169/377 (44%), Gaps = 1/377 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ ++ YL K  +   +   F  +     + D  +Y  L+  +  KG   +   + + M
Sbjct: 308 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 367

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D   + ++I + AK  ++D A+ +F +M++    P+   + +++D + K+G +
Sbjct: 368 VRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSV 427

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +M  + +M   G  P+  +Y SLI       K D A  L  EM   G   N   F  I
Sbjct: 428 DDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSI 487

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+SH K G++  +  +F  M R G  P   TY+ L++    +G++D A KL  SM S G+
Sbjct: 488 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
           +P + TY  L+    +   +D A  +  EM + G S ++   ++++  +       A + 
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKE 607

Query: 537 LRF-MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           L   +  SG +        +     KN L + A  + +    +  +++   +  ++  L+
Sbjct: 608 LYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALL 667

Query: 596 RCQDEQNERHLMAILSA 612
           +C      + L A  SA
Sbjct: 668 KCGRMDEAKDLFAAHSA 684



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 174/379 (45%), Gaps = 6/379 (1%)

Query: 219 LFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +FD M    +K G+    + Y  ++Q  A    L   +     ++ +  + D   +N+L+
Sbjct: 328 IFDSM----TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILI 383

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             +  +    +A  ++  M +   + +   Y  +I  L KSG +D A+  F++M +    
Sbjct: 384 CAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLT 443

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P+  ++ SL+  +    + D + ++ +EM   G   +   + S+I+S+ K G++  + +L
Sbjct: 444 PNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 503

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +D M   G +P+   +  +I+    +GK+D A  +   M   G  P   TY  L+  +  
Sbjct: 504 FDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCR 563

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
             ++D A+ L+  M S+G+ P + TY  +L  L   +    A ++ + +   G  +++S 
Sbjct: 564 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELST 623

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            ++++  + K+   D ALR  + +  + ++        +  + +K    + AK L   + 
Sbjct: 624 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHS 683

Query: 577 ESAAKVDLVLYTSVLAHLV 595
            +    D+  Y+ +  +L+
Sbjct: 684 ANGLVPDVRTYSLMAENLI 702



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 144/326 (44%), Gaps = 3/326 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P   CY  + DVL +S   D  +  F++M+ +     I +   Y  +I  L   
Sbjct: 403 RQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIV---YTSLIHGLCTC 459

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
           DK + +     ++LD    ++T  +N ++     +G   ++ ++++ M +     D  TY
Sbjct: 460 DKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 519

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I     +G++D A KL   M     +P    + +L++   +  R+D ++ ++ EM  
Sbjct: 520 NTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVS 579

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+   Y  +++      +   A  L+  +  +G +     + +I+    K+   D 
Sbjct: 580 SGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDE 639

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+ +F ++          T++ ++      G++D A  L+ + ++ GL P + TY+ +  
Sbjct: 640 ALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAE 699

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVD 514
            L ++  ++    + L M+  G S D
Sbjct: 700 NLIEQGSLEELDDLFLSMEENGCSAD 725



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 135/354 (38%), Gaps = 43/354 (12%)

Query: 286 PYKAFEIYESMEK---GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +   G+ +    TY ++I    ++GRLD        + ++ FR     
Sbjct: 70  PAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAIT 129

Query: 343 FASLVDSMGKAGRLDTSMKVYM-------------------------------------- 364
           F  L+  +    R   +M + +                                      
Sbjct: 130 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMM 189

Query: 365 -EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            + +G G  P    Y +++  + K G  D A   + EM   G  P+   ++ II +  K+
Sbjct: 190 ADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKA 249

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
             +D AM +   M + G +P   TY+ +L  + SSGQ   A+     M S G+ P + TY
Sbjct: 250 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTY 309

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGS 542
           ++L+  L K      A KI   M   G   D++    +L  Y   G++      L  M  
Sbjct: 310 SSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR 369

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +GI+ ++ +   L  +  K    + A  +     +     ++V Y +V+  L +
Sbjct: 370 NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCK 423



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 95/217 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    +  +++ +   FK+++ S    +  +YN+++    +      A E+Y S+
Sbjct: 553 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 612

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K    L+ STY +++  L K+   D A+++FQ +   + +     F  ++ ++ K GR+
Sbjct: 613 TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRM 672

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  ++      G  P    Y  + E+  + G L+    L+  M   G   +  +   I
Sbjct: 673 DEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSI 732

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           +    + G +  A +    ++   F    ST S LLE
Sbjct: 733 VRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 769



 Score = 45.8 bits (107), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 128/325 (39%), Gaps = 42/325 (12%)

Query: 429 AMSIFTDMERAG---FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           A+S +  M RAG     PT  TY+ L+     +G++D       ++   G R    T+T 
Sbjct: 73  AVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTP 132

Query: 486 LLT-LLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSS 543
           LL  L A ++  D    +L  M  +G   DV S +++L     +     AL  L  M   
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 544 -------GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                   + + N ++   F+    +  Y +   +L+  +      D+V Y+S++A L  
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILP----DVVTYSSIIAAL-- 246

Query: 597 CQDEQNERHLMAILSATKHKA-------HAFLCGLFTGPEQRKQPVLSFVREFFHGIDYE 649
           C+ +  ++ +  + +  K+         ++ L G +    Q K+ + +  +    G+   
Sbjct: 247 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG-YCSSGQPKEAIGTLKKMRSDGV--- 302

Query: 650 LEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSV 709
            E     Y  + L+NYL   G+   AR ++    +  L P    +          R L  
Sbjct: 303 -EPNVVTY--SSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATY----------RTLLQ 349

Query: 710 GAALIAVMHTLHRFRKRMLYYGVVP 734
           G A    +  +H     M+  G+ P
Sbjct: 350 GYATKGALVEMHALLDLMVRNGIQP 374


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 191/402 (47%), Gaps = 6/402 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLE 252
           V  D C + L  +   S  FDG+ + F  +  + S+ G+   + +YN ++  L +  K++
Sbjct: 214 VSVDSCNLFLARL---SNSFDGIRTAF-RVFREYSEVGVCWNTVSYNIILHLLCQLGKVK 269

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            ++    ++       D  SY+V++  +       K  ++ E +++     +  TY  +I
Sbjct: 270 EAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSII 329

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L K+GR+  A ++ + MK +   P   ++ +L+   GK+G +    K++ EM+     
Sbjct: 330 SFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIV 389

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y S+I    +AGK+  A +L+ EM   G +P+   +T +I+ + K+G++  A S+
Sbjct: 390 PDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSL 449

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M   G  P   TY+ L++     G+VD A +L + M+  GL+P + TY AL+  L K
Sbjct: 450 HNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCK 509

Query: 493 RKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
              ++ A K++ EM   G+  D ++ + ++  Y K G +  A   LR M   G++     
Sbjct: 510 VGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVT 569

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
              L      + + E  + L++  ++     +   + S++  
Sbjct: 570 FNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQ 611



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 140/300 (46%), Gaps = 2/300 (0%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K +  +YN +++     G   +A ++   M+      D   Y  +I    KSG +    K
Sbjct: 319 KPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYK 378

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           LF EMK +   P F  + S++  + +AG++  + K++ EM   G +P    Y +LI+ Y 
Sbjct: 379 LFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYC 438

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           KAG++  A  L ++M   G  PN   +T +++   K G++DIA  +  +M   G  P   
Sbjct: 439 KAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVC 498

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TY+ L+      G ++ A+KL   M  AG  P   TYT ++    K   +  A ++L  M
Sbjct: 499 TYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIM 558

Query: 507 KTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNAL 564
              G    +   +VLM  +   G ++   R +++M   GI  N      L +  C++N +
Sbjct: 559 LDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNM 618



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 190/435 (43%), Gaps = 20/435 (4%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V K++E + R    P   T    + F+ K   + +A +V+          R  K Q  + 
Sbjct: 306 VLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVL----------RVMKNQRIF- 354

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y  L     +S +      LFDEM     K  +  F  Y  +I  L +A K+  +
Sbjct: 355 PDNVVYTTLISGFGKSGNVSVEYKLFDEM---KRKKIVPDFVTYTSMIHGLCQAGKVVEA 411

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F ++L    K D  +Y  L+  +   G   +AF ++  M +   + +  TY  ++  
Sbjct: 412 RKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDG 471

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K G +D A +L  EM E+  +P+   + +L++ + K G ++ ++K+  EM   G  P 
Sbjct: 472 LCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPD 531

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +++++Y K G++  A  L   M   G +P    F +++     SG L+    +  
Sbjct: 532 TITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIK 591

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G +P  +T++ L++ +     + + +++Y  M + G+ P  +TY  L+    K +
Sbjct: 592 WMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKAR 651

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +  A  +  EM   G+S+  ++ + L+  + K    + A +    M     RT+ FI  
Sbjct: 652 NMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEM-----RTHGFIAE 706

Query: 554 QLFESCMKNALYESA 568
           +       +  YE  
Sbjct: 707 KEIYDIFVDVNYEEG 721



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 164/363 (45%), Gaps = 36/363 (9%)

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
           D +  ++  F++  +     +T SYN+++ L    G   +A  +   ME      D  +Y
Sbjct: 231 DGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSY 290

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            +++    +  +L   +KL +E++ +  +P+   + S++  + K GR+  + +V   M+ 
Sbjct: 291 SVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKN 350

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
               P   +Y +LI  + K+G +    +L+DEM+     P+F  +T +I    ++GK+  
Sbjct: 351 QRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVE 410

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +F++M   G  P   TY+ L++ +  +G++  A  L+N M   GL P + TYTAL+ 
Sbjct: 411 ARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVD 470

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRT 547
            L K   VD+A ++L EM   G   +V   + L+  + K G+++ A++ +  M  +G   
Sbjct: 471 GLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFP 530

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
                                              D + YT+++    +  +      L+
Sbjct: 531 -----------------------------------DTITYTTIMDAYCKMGEMAKAHELL 555

Query: 608 AIL 610
            I+
Sbjct: 556 RIM 558



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 109/254 (42%), Gaps = 1/254 (0%)

Query: 215 GMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           G + + +E++H+ S+ G+      YN +I  L K   +E +    +++  +    DT +Y
Sbjct: 476 GEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITY 535

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
             +M  +   G   KA E+   M          T+ +++     SG L+   +L + M +
Sbjct: 536 TTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLD 595

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           +   P+   F SL+        +  ++++Y  M   G  P    Y  LI+ + KA  +  
Sbjct: 596 KGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKE 655

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  L  EM   GF      +  +I+   K  K + A  +F +M   GF+     Y   ++
Sbjct: 656 AWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVD 715

Query: 454 MHASSGQVDSAMKL 467
           ++   G  ++ ++L
Sbjct: 716 VNYEEGNWENTLEL 729



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 69/164 (42%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++     +  LE      K +LD     +  ++N LM  +  +       EIY+ M
Sbjct: 569 TFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGM 628

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D +TY ++I    K+  +  A  L +EM E+ F  +   + SL+    K  + 
Sbjct: 629 HAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKF 688

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
           + + K++ EM+  G      +Y   ++   + G  +  L L DE
Sbjct: 689 EEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDE 732


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 166/335 (49%), Gaps = 10/335 (2%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K D   +N+L+  +       +A + +  M+  +C    +++ +++ + ++  +L+ A K
Sbjct: 80  KPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEK 139

Query: 327 LFQEMKERNFRPS---FNIFASL------VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           LF EMKE N+ P    + IF+ +      ++ +GK+GRL  +   + +MQ  G  P+   
Sbjct: 140 LFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNT 199

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           +  +I  Y KA   D A  L+  MR A   PN   +T ++ +HA+ G    A  IF +++
Sbjct: 200 FTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQ 259

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             GF+P   TY+ LLE ++       A +++ +M  AG+RP   +Y  L+    +  L  
Sbjct: 260 SVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTA 319

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  +   MK  G+   + +  +L+  Y K G V  A R +R + +SG++ + F+   L 
Sbjct: 320 DAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLL 379

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +   +   +  + LLE+ V S AK D+    +++
Sbjct: 380 SAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLI 414



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 161/331 (48%), Gaps = 11/331 (3%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMS 254
           G   Y    +VL +S    G LS  ++   D  K GI    + +  +I    KA   + +
Sbjct: 161 GIATYNTYLEVLGKS----GRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKA 216

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F+ +  + C  +  +Y  LM     +G   +A EI+  ++      D  TY  ++ +
Sbjct: 217 DDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEA 276

Query: 315 LAKSGRLDAAIKLFQEMKERNFRP---SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
            ++      A ++FQ M E   RP   S+NI   L+D+ G+AG    +  VY  M+  G 
Sbjct: 277 YSRGEHPTGAKEVFQAMVEAGVRPDQVSYNI---LIDAFGRAGLTADAQAVYDSMKEAGF 333

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           +P+   ++ L+ SYAKAGK+  A RL  E+  +G +P+  +F  ++ ++  SG++D   S
Sbjct: 334 KPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMES 393

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +   M  +   P  ST + L+  +A  G ++ A +++NS+ S GL P + ++T+L+   A
Sbjct: 394 LLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYA 453

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           +RKL      I  +M   G   D + + V +
Sbjct: 454 QRKLFRKCVSIFQKMVKAGCIPDRATAKVFL 484



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 106/220 (48%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN L+  +     P  A E++++M +     D  +Y ++I +  ++G    A  ++
Sbjct: 266 DVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVY 325

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             MKE  F+P+      L+ S  KAG++  + ++  E++  G +P   M+ SL+ +Y  +
Sbjct: 326 DSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNS 385

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G++D    L + M  +  +P+      +I ++A+ G ++ A  +F  +E  G  P   ++
Sbjct: 386 GRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSW 445

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           + L+  +A        + ++  M  AG  P  +T    L+
Sbjct: 446 TSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLS 485



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 113/224 (50%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +++  ++ +    +   F+ ++++  + D  SYN+L+  F   GL   A  +Y+SM+
Sbjct: 270 YNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMK 329

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +        ++ L++ S AK+G++  A +L +E++    +P   +F SL+ + G +GR+D
Sbjct: 330 EAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRID 389

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
               +   M     +P      +LI +YA+ G ++ A  +++ +   G  P+   +T ++
Sbjct: 390 EMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLM 449

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
            ++A+       +SIF  M +AG +P  +T    L    S  QV
Sbjct: 450 GAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLSSCRSPEQV 493



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 120/256 (46%), Gaps = 10/256 (3%)

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
           F+P    F  L+D+ GK+ +   + K +  M+     P+   +  L+ +Y++  +L+ A 
Sbjct: 79  FKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAE 138

Query: 396 RLWDEMRIAGFRP---------NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           +L+ EM+ + + P             +   +E   KSG+L  A   F DM++ G LP  +
Sbjct: 139 KLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVN 198

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           T++ ++ ++  +   D A  L+ SM  A   P L TYTAL+   A+      A +I  E+
Sbjct: 199 TFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAEL 258

Query: 507 KTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
           +++G+  DV   + L+  Y +      A    + M  +G+R +      L ++  +  L 
Sbjct: 259 QSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLT 318

Query: 566 ESAKPLLETYVESAAK 581
             A+ + ++  E+  K
Sbjct: 319 ADAQAVYDSMKEAGFK 334


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 199/437 (45%), Gaps = 46/437 (10%)

Query: 200 YVMLFDVLNE-SRDFDGMLSLFDEMVHDSSKNGISL--FSAYNRVIQYLAKADKLEMSYC 256
           Y ++ DV  +  R +D +L L DEM       G+ L  F+  + VI    +   L+ +  
Sbjct: 253 YNVMLDVYGKMGRSWDRILELLDEM----RSKGLELDEFTC-STVISACGREGMLDEARK 307

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
              ++  +  K  T +YN ++ +F   G+  +A  I + ME   C  D  TY  +  +  
Sbjct: 308 FLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYV 367

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           ++G LD  + +   M  +   P+   + +++D+ GKAGR D +++++  M+  G  P+  
Sbjct: 368 RAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVY 427

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y S++    K  + +  +++  EM++ G  PN   +  ++   ++ GK +    +  +M
Sbjct: 428 TYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREM 487

Query: 437 ERAGFLPTPSTYSCLLEMHASSG-QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           +  GF P   T++ L+  +A  G +VDSA K+Y  M  +G  P ++TY ALL  LA+R  
Sbjct: 488 KNCGFEPDKDTFNTLISAYARCGSEVDSA-KMYGEMVKSGFTPCVTTYNALLNALARRGD 546

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSV------------------------ 530
              A  ++ +M+T G+  + ++  +L+  Y K G+V                        
Sbjct: 547 WKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRT 606

Query: 531 ----DHALRWLRFMGSS-------GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
               +H  R LR M  +       G + +  ++  +     +N ++  A+ +L    E  
Sbjct: 607 LVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECG 666

Query: 580 AKVDLVLYTSVLAHLVR 596
            + +L  Y  ++   VR
Sbjct: 667 LQPNLFTYNCLMDLYVR 683



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 141/300 (47%), Gaps = 3/300 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYES 295
           AY  ++   A+  K + +   F K+ +        +YNV++ ++   G  + +  E+ + 
Sbjct: 217 AYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDE 276

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M      LD  T   +I +  + G LD A K   E+K   ++P    + S++   GKAG 
Sbjct: 277 MRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGI 336

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              ++ +  EM+     P +  Y  L  +Y +AG LD  + + D M   G  PN   +T 
Sbjct: 337 YTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTT 396

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+++ K+G+ D A+ +F+ M+  G  P   TY+ +L M     + +  +K+   M   G
Sbjct: 397 VIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNG 456

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS-VDHA 533
             P  +T+  +L + ++    +   K+L EMK  G+  D    + L+  Y + GS VD A
Sbjct: 457 CAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSA 516



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 164/374 (43%), Gaps = 37/374 (9%)

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
           D + ++D Q   +++ +   +     A ++++ +   + SLD   Y  ++ S A++G+  
Sbjct: 173 DQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYK 232

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR--------------------------- 355
            AI LF +MKE    P+   +  ++D  GK GR                           
Sbjct: 233 RAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTV 292

Query: 356 ---------LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
                    LD + K   E++  G++P    Y S+++ + KAG    AL +  EM     
Sbjct: 293 ISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNC 352

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P+   +  +  ++ ++G LD  M++   M   G +P   TY+ +++ +  +G+ D A++
Sbjct: 353 PPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALR 412

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYI 525
           L++ M   G  P + TY ++L +L K+   +   K+L EMK  G + +  + + +L V  
Sbjct: 413 LFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCS 472

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           ++G  ++  + LR M + G   +      L  +  +      +  +    V+S     + 
Sbjct: 473 EEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVT 532

Query: 586 LYTSVLAHLVRCQD 599
            Y ++L  L R  D
Sbjct: 533 TYNALLNALARRGD 546



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 169/411 (41%), Gaps = 39/411 (9%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            D  +++ D M   +SK  +     Y  VI    KA + + +   F  + D  C  +  +
Sbjct: 372 LDEGMAVIDTM---TSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYT 428

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN ++ +   K       ++   M+   C+ + +T+  M+   ++ G+ +   K+ +EMK
Sbjct: 429 YNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMK 488

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
              F P  + F +L+ +  + G    S K+Y EM   G  P    Y +L+ + A+ G   
Sbjct: 489 NCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWK 548

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD--------------------IAMSI 432
            A  +  +MR  GF+PN   +++++  ++K+G +                     +   +
Sbjct: 549 AAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLV 608

Query: 433 FTD--------MERA-------GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            T+        MERA       G+ P     + +L M A +     A ++ + +   GL+
Sbjct: 609 LTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQ 668

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P L TY  L+ L  +      A ++L  ++  G   D VS + V+  + + G +  A+  
Sbjct: 669 PNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGV 728

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           L  M + GI+                 L++ A  ++   +E   +   + Y
Sbjct: 729 LSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTY 779



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 142/318 (44%), Gaps = 9/318 (2%)

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           EM  C F+         D  ++N L++ +   G    + ++Y  M K   +   +TY  +
Sbjct: 486 EMKNCGFEP--------DKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNAL 537

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           + +LA+ G   AA  + Q+M+ + F+P+ N ++ L+    KAG +    KV  E+     
Sbjct: 538 LNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHV 597

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            PS  +  +L+ +  K   L    R +D+++  G++P+  +   ++   A++     A  
Sbjct: 598 FPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKARE 657

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +   +   G  P   TY+CL++++   G+   A ++   + ++G  P + +Y  ++    
Sbjct: 658 MLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFC 717

Query: 492 KRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           ++ L+  A  +L EM T G     V+ +  L  Y      D A   +RFM     R +  
Sbjct: 718 RKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSEL 777

Query: 551 IVRQLFESCMKNALYESA 568
             + L +   K   YE A
Sbjct: 778 TYKILVDGYCKAGKYEEA 795



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/297 (18%), Positives = 123/297 (41%), Gaps = 5/297 (1%)

Query: 219 LFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           ++ EMV    K+G +   + YN ++  LA+    + +    + +     K +  SY++L+
Sbjct: 518 MYGEMV----KSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLL 573

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             +   G      ++ + +  G           ++ +  K   L    + F ++++  ++
Sbjct: 574 HCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYK 633

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P   +  S++    +      + ++   +  CG +P+   Y  L++ Y + G+   A  +
Sbjct: 634 PDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEV 693

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
              ++ +G  P+   +  +I+   + G +  A+ + ++M   G  PT  TY+  L  +A 
Sbjct: 694 LKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAG 753

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
               D A ++   M     RP   TY  L+    K    + A   + ++K +  S D
Sbjct: 754 MELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKYEEAMDFVSKIKELDISFD 810


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 188/426 (44%), Gaps = 8/426 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  ++ +  +P   C   LFD L +        + ++E++       +  F   N
Sbjct: 174 AIQCFRLVRKHNLQIPFHSCGY-LFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKF---N 229

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++  L K  K+  +   F ++     +    S+N L+  +   G   + F +   M + 
Sbjct: 230 VLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMEN 289

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K G+LD A KLF EM +R   P+   F +L++     GR D  
Sbjct: 290 RVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLG 349

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M   G +P    Y +LI    K G L  A +L  EM   G +P+   +TM+I+ 
Sbjct: 350 MEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDG 409

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A+ I  +M + G       ++ L+      GQV  A +    M  AG++P 
Sbjct: 410 CCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPD 469

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
            +TYT ++    K+  V    K+L EM+  G+   V   +VL+  + K G + +A   L 
Sbjct: 470 DATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLD 529

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
            M + G+  ++     L E   K+   E    L     E     D   YTS++  L +  
Sbjct: 530 AMLNLGVVPDDITYNILLEGHCKHGNREDFDKLQS---EKGLVQDYGSYTSLIGDLRKTC 586

Query: 599 DEQNER 604
            E+ +R
Sbjct: 587 KERQKR 592



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 153/345 (44%), Gaps = 3/345 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           ++VLM  + + G    A + +  + K    +   +   +   L K      A   ++E+ 
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +  + P    F  L+  + K  +++ +  ++ E+   G RP+   + +LI  Y K+G LD
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
              RL   M      P+   ++++I    K G+LD A  +F +M   G +P   T++ L+
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             H  +G+ D  M++Y  M   G++P + TY  L+  L K   +  A K+++EM   G  
Sbjct: 338 NGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK 397

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKP 570
            D     +L+    K+G ++ AL   + M   GI  +N     L    C +  + E+ + 
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           L E  +E+  K D   YT V+    +  D +    L+  +    H
Sbjct: 458 LRE-MLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGH 501


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 176/394 (44%), Gaps = 4/394 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L     E +  D     FD M     K  I    A N ++    K+++ E ++  + 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMM---KGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYA 180

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++     K    ++N+++ +   +G   KA E    ME      +  TY  +I      G
Sbjct: 181 EMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRG 240

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R++ A  +F  MK R  +P    + S +  M K G+L+ +  +  +M+  G RP+A  Y 
Sbjct: 241 RVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYN 300

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI+ Y   G L+ A    D+M   G  P    + M+I +     K+D A  I  +M   
Sbjct: 301 TLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEK 360

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G +P   TY+ L+  +   G V  A  L++ M S G++P   TYT+L+ +L+KR  +  A
Sbjct: 361 GLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQA 420

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +  ++   G   D+   + L+  +  +G++D A   L+ M    +  +      L + 
Sbjct: 421 DDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQG 480

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
             +    E+A+ L+E       K D + Y ++++
Sbjct: 481 RCREGKVEAARELIEEMKSRGIKPDHISYNTLIS 514



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 160/323 (49%), Gaps = 1/323 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y   I  + K  KLE +    +K+ +   +    +YN L+  + NKG    AF+  + M
Sbjct: 263 TYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKM 322

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +       STY ++I +L    ++D A  + +EM E+   P    +  L++   + G +
Sbjct: 323 VREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNV 382

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++ EM   G +P+   Y SLI   +K G++  A  L++++   G  P+  +F  +
Sbjct: 383 KKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNAL 442

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ H  +G +D A ++  +M++   +P   T++ L++     G+V++A +L   M S G+
Sbjct: 443 IDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGI 502

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +P   +Y  L++  +KR  +  A ++  EM ++G++  +   + L+  + K+   DHA +
Sbjct: 503 KPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQ 562

Query: 536 WLRFMGSSGIRTNNFIVRQLFES 558
            L+ M S GI  N+     L E 
Sbjct: 563 LLKEMISKGITPNDNTYLSLIEG 585



 Score = 43.1 bits (100), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 55/115 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++Q   +  K+E +    +++     K D  SYN L++ +  +G    AF + + M
Sbjct: 473 TFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEM 532

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
                +    TY  +I  L K+   D A +L +EM  +   P+ N + SL++ +G
Sbjct: 533 LSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIG 587


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 115/488 (23%), Positives = 199/488 (40%), Gaps = 11/488 (2%)

Query: 239 NRVIQYLAKADKL-EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           N++++ L  A +L E      K++ +  C  D  SYN L+  F N+    +A E+   M 
Sbjct: 133 NQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMA 192

Query: 298 KGE---CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
             +   C  +  +Y  +I      G++D A  LF EM +R  +P+   + +++D + KA 
Sbjct: 193 DSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQ 252

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            +D +  V+ +M   G +P    Y  LI  Y   GK    +R+ +EM   G +P+   + 
Sbjct: 253 VVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYG 312

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++     +G+   A   F  M R G  P  + Y  L+  +A+ G +     L N M   
Sbjct: 313 SLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVEN 372

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           GL P    +  + T  AK+ ++D A  I  +MK  G S DV     L+    K G VD A
Sbjct: 373 GLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDA 432

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           +     M + G+  N F+   L         +E AK      +    + D+V + ++L +
Sbjct: 433 VLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCN 492

Query: 594 LVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEG 653
           L         + L+ ++     +          G       ++  + E    +D  L  G
Sbjct: 493 LCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIG----GHCLVGRIDEAAKSLDVMLSVG 548

Query: 654 AA--RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGA 711
                +  N LL+     G+I+ A  V++    N + P  + +   +      R  S   
Sbjct: 549 LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAK 608

Query: 712 ALIAVMHT 719
            L   M T
Sbjct: 609 ELYLNMIT 616



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 169/382 (44%), Gaps = 12/382 (3%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
            FD M+    K  +++   Y  +I   A    L   +     ++++    D   +N++ T
Sbjct: 330 FFDSMIRKGIKPNVAI---YGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFT 386

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +  K +  +A  I+  M++   S D   +  +I +L K GR+D A+  F +M      P
Sbjct: 387 AYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAP 446

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +  +F SLV  +    + + + + Y EM   G RP    + +++ +    G++  A RL 
Sbjct: 447 NIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI 506

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           D M   G RP+   +T +I  H   G++D A      M   G  P   TY+ LL  +  +
Sbjct: 507 DLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRA 566

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G++D A  ++  M   G+ PG+ TY+ +L  L   +    A ++ L M T G   ++   
Sbjct: 567 GRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIY 626

Query: 519 DVLMVYI-KDGSVDHALRWLRFMGSSG----IRTNNFIVRQLFESCMKNALYESAKPLLE 573
           ++++  + K+  VD A +  + + S      I T N ++  LF    K+   E A  L  
Sbjct: 627 NIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALF----KSGRNEDAMHLFA 682

Query: 574 TYVESAAKVDLVLYTSVLAHLV 595
           T        D+  Y  +  +L+
Sbjct: 683 TISSYGLVPDVFTYCLIAENLI 704



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 164/377 (43%), Gaps = 1/377 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++ YL    +   +   F  ++    K +   Y +L+  +  KG   +  ++   M
Sbjct: 310 TYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLM 369

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   S D   + ++  + AK   +D A+ +F +MK++   P    F +L+D++ K GR+
Sbjct: 370 VENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRV 429

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++  + +M   G  P+  ++ SL+       K + A   + EM   G RP+   F  I
Sbjct: 430 DDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTI 489

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + +    G++  A  +   MER G  P   +Y+ L+  H   G++D A K  + M S GL
Sbjct: 490 LCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGL 549

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +P   TY  LL    +   +D A  +  EM   G +   V+ S +L           A  
Sbjct: 550 KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKE 609

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M +SG + N +I   +     KN   + A  L ++      ++++  +  ++  L 
Sbjct: 610 LYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALF 669

Query: 596 RCQDEQNERHLMAILSA 612
           +    ++  HL A +S+
Sbjct: 670 KSGRNEDAMHLFATISS 686



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 152/362 (41%), Gaps = 3/362 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  VI       +++ +Y  F +++D   + +  +Y  ++       +  +A  +++ M
Sbjct: 205 SYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQM 264

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I      G+    +++ +EM     +P    + SL++ +   GR 
Sbjct: 265 IDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC 324

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +   +  M   G +P+  +Y  LI  YA  G L     L + M   G  P+  +F +I
Sbjct: 325 REARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
             ++AK   +D AM IF  M++ G  P    +  L++     G+VD A+  +N M + G+
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGV 444

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P +  + +L+  L      + A +   EM   G   DV   + ++  +   G V  A R
Sbjct: 445 APNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQR 504

Query: 536 WLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            +  M   G R +      L    C+   + E+AK  L+  +    K D   Y ++L   
Sbjct: 505 LIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKS-LDVMLSVGLKPDEWTYNTLLHGY 563

Query: 595 VR 596
            R
Sbjct: 564 CR 565



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 137/306 (44%), Gaps = 4/306 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++ +F   K+Q    P    +  L D L +    D  +  F++M+++     I +F  
Sbjct: 395 DEAMHIFNKMKQQGLS-PDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVF-- 451

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            N ++  L   DK E +   + ++L+   + D   +N ++     KG   KA  + + ME
Sbjct: 452 -NSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLME 510

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D  +Y  +I      GR+D A K    M     +P    + +L+    +AGR+D
Sbjct: 511 RVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRID 570

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  V+ EM   G  P    Y +++       +   A  L+  M  +G + N  ++ +I+
Sbjct: 571 DAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIIL 630

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              +K+  +D A  +F  +    F    +T++ ++     SG+ + AM L+ +++S GL 
Sbjct: 631 NGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLV 690

Query: 478 PGLSTY 483
           P + TY
Sbjct: 691 PDVFTY 696



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 136/341 (39%), Gaps = 44/341 (12%)

Query: 300 ECSL----DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           EC++    D  TY ++I    + GRL+     F  + +  +R +  +   L+  +  A R
Sbjct: 85  ECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKR 144

Query: 356 LDTSMKVYM---------------------------------------EMQGCGHRPSAP 376
           L  +M + +                                       + QG    P+  
Sbjct: 145 LREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVV 204

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y ++I  +   G++D A  L+ EM   G +PN   +T +I+   K+  +D A  +F  M
Sbjct: 205 SYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQM 264

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   TY+CL+  + S G+    +++   M++ GL+P   TY +LL  L      
Sbjct: 265 IDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC 324

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
             A      M   G   +V+   +L+  Y   G++      L  M  +G+  ++ I   +
Sbjct: 325 REARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           F +  K A+ + A  +     +     D+V + +++  L +
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCK 425



 Score = 42.7 bits (99), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 74/170 (43%), Gaps = 4/170 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +  +FR   R     PG   Y  +   L  +R F     L+  M+    +  I +   
Sbjct: 570 DDAYGVFREMLRNG-ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWI--- 625

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++  L+K + ++ ++  F+ +   D +++  ++N+++      G    A  ++ ++ 
Sbjct: 626 YNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATIS 685

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
                 D  TY L+  +L + G L+    LF  M++    P+  +  +LV
Sbjct: 686 SYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALV 735


>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 873

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 134/576 (23%), Positives = 233/576 (40%), Gaps = 15/576 (2%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD +L LF EM HD+S +     + YN ++   A     + S      +L++    DT S
Sbjct: 229 FDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVS 288

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y  ++  F + G   +A E++  M     + D S Y  ++ +  + G    A+ + ++M+
Sbjct: 289 YRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQ 348

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P+   +  L+D  G+ GR D   +++ EM+     P    Y  L   +   G   
Sbjct: 349 ADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-TAVPPDTATYNVLFRVFGDGGFFK 407

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             + L+ +M   G +P+      ++ +    G    A  +   M R G +PT   Y+ L+
Sbjct: 408 EVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLV 467

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGY 511
           E    +   + A   +N MT  G  P L TY AL    A+  L   A  I   M    G 
Sbjct: 468 EALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGI 527

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
                + D L+  Y +   +D A++    M  S    +   +  +  +     + + +K 
Sbjct: 528 QKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 587

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA-HAFLCGLFTGP- 628
             E    S     ++ Y  +L+   R     +   L+  +   +  + H  +  L  G  
Sbjct: 588 QFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASLIKGEY 647

Query: 629 -EQRKQPVLSFVRE--FFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYEN 685
            +     ++ +V E     G DY         F N LL  L   GQ  RA  V   A + 
Sbjct: 648 DDSSNWQMVEYVLENSTMEGCDYSFR------FFNALLGVLWWFGQKGRAARVLDQAVKF 701

Query: 686 KLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTL 745
            LFP+ +  D  + WSLDV  +S+G AL+AV   L++   R++    +P+   +V   ++
Sbjct: 702 GLFPE-LYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDEDLPQLASVVFFFSI 760

Query: 746 KIVIAQMLSSVESPFEVSKVVLRAPGDSVMEWFKKP 781
                   S+V     ++KVV     D++   F  P
Sbjct: 761 SRRGEMEKSTVTRGLPIAKVVYSFLNDTLSASFHFP 796



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 99/465 (21%), Positives = 175/465 (37%), Gaps = 78/465 (16%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSLSLFRWAKRQ 190
           E+E+ +D+L  +P    I + L+                      D   SL LF++ +RQ
Sbjct: 73  EVESLIDRLSNLPPRGSIARCLETARHRLTLQDFAAVYREFSRRGDWQRSLRLFKYMQRQ 132

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           SW  P +  + ++  VL   R    +L    E+ HD          A +R          
Sbjct: 133 SWCRPDEHIHAIVIGVLG--RQGPALLDKCLEVFHD--------LPAESRT--------- 173

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
                                SY  L+  +    L  +A  + + M+    +   +TY  
Sbjct: 174 -------------------ALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNT 214

Query: 311 MIPSLAKSGR----LDAAIKLFQEMKER---NFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           ++ + A++       D  + LF EM+     + RP    + +L+ +       D S  + 
Sbjct: 215 VLAACARATDPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLL 274

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
             M   G  P    Y  +++++A AG L  A  L+ EM   G   +   +  ++E+H + 
Sbjct: 275 HTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRV 334

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G    A+++   M+  G  PT +TY  LL+++   G+ D   +L+  M +A + P  +TY
Sbjct: 335 GATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA-VPPDTATY 393

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV-DHALRWLRFMGS 542
             L  +           ++  +M   G   D+   + +M     G +   A   L +M  
Sbjct: 394 NVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTR 453

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAK------------PLLETY 575
            G+         L E+    A+YE A             P LETY
Sbjct: 454 EGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETY 498


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 180/408 (44%), Gaps = 4/408 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    + +L +      +    L L DEM     +N +    +Y  +I  L     L ++
Sbjct: 401 PNSRTFCLLIEGYCREHNMGRALELLDEM---EKRNLVPSAVSYGAMINGLCHCKDLSLA 457

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               +K+  S  K +   Y++L+  + ++G   +A  + + M     + D   Y  +I  
Sbjct: 458 NKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISC 517

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L+K+G+++ A     E++ R  +P    F + +    K G++  + K + EM   G  P+
Sbjct: 518 LSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 577

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
            P+Y  LI  + KAG L  AL ++  +   G  P+    +  I    K+G++  A+ +F+
Sbjct: 578 NPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS 637

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +++  G +P   TYS L+      G+V+ A +L++ M   G+ P +  Y AL+  L K  
Sbjct: 638 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 697

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +  A K+   M   G   D V+ S ++  Y K  +V  A      M S G++ ++F+  
Sbjct: 698 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 757

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
            L   C K    E A  L    ++      L   T +  +   C+ ++
Sbjct: 758 ALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 805



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 136/615 (22%), Positives = 259/615 (42%), Gaps = 30/615 (4%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           L D      D D +L + D MV  S    I+L + YN +I  L K  K+E +    K ++
Sbjct: 339 LIDGFMREGDIDEVLRIKDVMV--SCGIPINLIT-YNVLIHGLCKFGKMEKAAEILKGMV 395

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
              CK +++++ +L+  +  +    +A E+ + MEK        +Y  MI  L     L 
Sbjct: 396 TLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLS 455

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A KL ++M     +P+  +++ L+ +    GR++ + ++   M   G  P    Y ++I
Sbjct: 456 LANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAII 515

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
              +KAGK++ A     E++  G +P+   F   I  ++K+GK+  A   F +M   G +
Sbjct: 516 SCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM 575

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P    Y+ L+  H  +G +  A+ ++  + + G+ P + T +A +  L K   V  A K+
Sbjct: 576 PNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 635

Query: 503 LLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             E+K  G   DV + S ++  + K G V+ A      M   GI  N FI   L +   K
Sbjct: 636 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 695

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
           +   + A+ L +   E   + D V Y++++    + ++      L   + +   + H+F+
Sbjct: 696 SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFV 755

Query: 622 -CGLFTG--PEQRKQPVLSFVREFFHGIDYELEEG-AARYFVNVLLNYLVLMGQINRARC 677
              L  G   E   +  ++  RE        L++G A     N L++      +I  A  
Sbjct: 756 YNALVHGCCKEGDMEKAMNLFREM-------LQKGFATTLSFNTLIDGYCKSCKIQEASQ 808

Query: 678 VWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRI 737
           +++     ++ P  + +   I W      +     L   M   +     + Y  ++    
Sbjct: 809 LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 868

Query: 738 KLVTGPTLKIVIAQMLSSVESPFEVSK---VVLRAPGDSVMEWFK------------KPI 782
           KL     +  +  +M++    P EV+    +      D+++E FK            K  
Sbjct: 869 KLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 928

Query: 783 VQQFLLNEIPSRADI 797
           +   L+  +  R D+
Sbjct: 929 IHDLLITALCKREDL 943



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 187/415 (45%), Gaps = 18/415 (4%)

Query: 167 ITQALKVINDSDTSL-SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-- 223
           +TQ ++    S + L S+  W +      P      ++FD+L +S    GML   DE   
Sbjct: 129 LTQMIRTPYSSSSILDSVLFWFRNYGGSSP------VVFDILIDSYKRMGML---DEAAN 179

Query: 224 VHDSSKNGISLFSAY--NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           V   +KN   L S    N +++ L K   +E+ +  +  +LD+    D  +Y  L+    
Sbjct: 180 VFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALC 239

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
             G    A  +   M++   + +   Y L+I  + + G +D A++L + M E+   P+  
Sbjct: 240 KTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTY 299

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            +  +   + +A R++ +   + EMQ  G +P      +LI+ + + G +D  LR+ D M
Sbjct: 300 TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVM 359

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G   N   + ++I    K GK++ A  I   M   G  P   T+  L+E +     +
Sbjct: 360 VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNM 419

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
             A++L + M    L P   +Y A++  L   K + +A K+L +M   G   +V    +L
Sbjct: 420 GRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSIL 479

Query: 522 -MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA--LYESAKPLLE 573
            M Y  +G ++ A R L  M  SG+  + F    +  SC+  A  + E++  LLE
Sbjct: 480 IMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAII-SCLSKAGKMEEASTYLLE 533



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 188/429 (43%), Gaps = 16/429 (3%)

Query: 149  PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
            P+++T    +  + K   + +ALKV ++            ++   VP    Y  L     
Sbjct: 611  PDVQTCSAFIHGLLKNGRVQEALKVFSEL-----------KEKGLVPDVFTYSSLISGFC 659

Query: 209  ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
            +  + +    L DEM        I +   YN ++  L K+  ++ +   F  + +   + 
Sbjct: 660  KQGEVEKAFELHDEMCLKGIAPNIFI---YNALVDGLCKSGDIQRARKLFDGMPEKGLEP 716

Query: 269  DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
            D+ +Y+ ++  +       +AF ++  M           Y  ++    K G ++ A+ LF
Sbjct: 717  DSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLF 776

Query: 329  QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +EM ++ F  + + F +L+D   K+ ++  + +++ EM      P    Y ++I+ + KA
Sbjct: 777  REMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKA 835

Query: 389  GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            GK++ A  L+ EM+      +   +T ++  + K G+     ++F  M   G  P   TY
Sbjct: 836  GKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTY 895

Query: 449  SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
              ++  H     +  A KL + +   G+    + +  L+T L KR+ +  A+K+L EM  
Sbjct: 896  GLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGE 955

Query: 509  MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            +G    ++A + L+  + + G +D A R    + S G+  +   +  L    + +   E 
Sbjct: 956  LGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSED 1015

Query: 568  AKPLLETYV 576
            A+ L++  V
Sbjct: 1016 ARNLIKQLV 1024



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 111/560 (19%), Positives = 225/560 (40%), Gaps = 53/560 (9%)

Query: 184 FRWAKR------QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
            R AKR      +    P +  Y ++ + + +  D D  + L   M     K  +     
Sbjct: 244 LRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSM---GEKGLVPNTYT 300

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +   L +A ++  +   F+++  +  K D  + + L+  F+ +G   +   I + M 
Sbjct: 301 YTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMV 360

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                ++  TY ++I  L K G+++ A ++ + M     +P+   F  L++   +   + 
Sbjct: 361 SCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMG 420

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++++  EM+     PSA  Y ++I        L  A +L ++M  +G +PN  +++++I
Sbjct: 421 RALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILI 480

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            ++A  G+++ A  +   M  +G  P    Y+ ++   + +G+++ A      +   GL+
Sbjct: 481 MAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK 540

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P   T+ A +   +K   +  AAK   EM   G   +     VL+  + K G++  AL  
Sbjct: 541 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSI 600

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            R + + G+  +           +KN   + A  +     E     D+  Y+S+++    
Sbjct: 601 FRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF-- 658

Query: 597 CQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAAR 656
           C+  + E+           + H  +C                      GI       A  
Sbjct: 659 CKQGEVEKAF---------ELHDEMC--------------------LKGI-------APN 682

Query: 657 YFV-NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
            F+ N L++ L   G I RAR ++    E  L P ++ +   I       N++   +L  
Sbjct: 683 IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 742

Query: 716 VMHTL----HRFRKRMLYYG 731
            M +     H F    L +G
Sbjct: 743 EMPSKGVQPHSFVYNALVHG 762


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 198/428 (46%), Gaps = 7/428 (1%)

Query: 131 NASAVAKIVEVVNRWKWGPELET-QLDKLQFVPKMVHITQAL-KVINDSDTSLSLFRWAK 188
           N   +  + +V+ +    PEL +  LD L F P    ++Q L +  ND   +L  F+WAK
Sbjct: 93  NLDELEAVTKVLQKRYPSPELASLALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAK 152

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
             + Y    E Y ++ D+L + R FD M  L +EM   +   G        +V++ LA+A
Sbjct: 153 SLTGYRHSPELYNLMVDILGKCRSFDSMSELVEEM---ARLEGYVTLETMTKVMRRLARA 209

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K E +   F ++     K DT + NVL+   +       A ++     KG   L   ++
Sbjct: 210 RKHEDAIEAFGRMEKFGVKKDTAALNVLIDALVKGDSVEHAHKVVLEF-KGSIPLSSRSF 268

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            +++    ++   D A K  ++MKE  F P    + + +++ G         +V  EM+ 
Sbjct: 269 NVLMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRE 328

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+A  Y S++    KAG+L  AL ++++M+  G   +   ++ +I    K+G+L  
Sbjct: 329 NGCPPNAVTYTSVMLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKD 388

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +F DM + G +    TY+ ++    +  + ++A++L   M     +P + TY  LL 
Sbjct: 389 ACDVFEDMPKQGVVRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLLK 448

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRT 547
           +  K+K + V   +L  M     S D++   +L+  + K G V+ A  +L  M   G   
Sbjct: 449 MCCKKKRMKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFTP 508

Query: 548 NNFIVRQL 555
               +++L
Sbjct: 509 KPSTLKKL 516



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 125/275 (45%), Gaps = 6/275 (2%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
           +RDFD      ++M     +  +  FS  N +  Y  + D  ++     +++ ++ C  +
Sbjct: 278 ARDFDNARKAMEDMKEHGFEPDV--FSYTNFIEAYGHERDFRKVDQV-LEEMRENGCPPN 334

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             +Y  +M      G   KA E+YE M+   C  D   Y  MI  L K+GRL  A  +F+
Sbjct: 335 AVTYTSVMLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFE 394

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           +M ++        + S++ +     R +T++++  EM+    +P+   Y  L++   K  
Sbjct: 395 DMPKQGVVRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKK 454

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++     L D M      P+   +++++ +  KSGK++ A S   +M   GF P PST  
Sbjct: 455 RMKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFTPKPSTLK 514

Query: 450 CLLEMHASSGQVDSAMKLYNSM---TSAGLRPGLS 481
            L     S   ++  +++   M   +   +RPGLS
Sbjct: 515 KLAGELESKSMLEEKVRVEEWMDRFSQNLIRPGLS 549



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 143/326 (43%), Gaps = 5/326 (1%)

Query: 273 YNVLMTLFLNKGLPYKAF-EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           YN LM   L K   + +  E+ E M + E  +   T   ++  LA++ + + AI+ F  M
Sbjct: 164 YN-LMVDILGKCRSFDSMSELVEEMARLEGYVTLETMTKVMRRLARARKHEDAIEAFGRM 222

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           ++   +        L+D++ K   ++ + KV +E +G     S    V L+  + +A   
Sbjct: 223 EKFGVKKDTAALNVLIDALVKGDSVEHAHKVVLEFKGSIPLSSRSFNV-LMHGWCRARDF 281

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D A +  ++M+  GF P+   +T  IE++           +  +M   G  P   TY+ +
Sbjct: 282 DNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRENGCPPNAVTYTSV 341

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +     +GQ+  A+++Y  M S G       Y++++ +L K   +  A  +  +M   G 
Sbjct: 342 MLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFEDMPKQGV 401

Query: 512 SVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             DV + + ++         + ALR L+ M     + N     +L + C K    +  K 
Sbjct: 402 VRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKKRMKVLKF 461

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           LL+   ++    DL  Y S+L + +R
Sbjct: 462 LLDHMFKNNISPDLATY-SLLVNALR 486



 Score = 45.8 bits (107), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 85/195 (43%), Gaps = 6/195 (3%)

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
           + G+R +  L+ ++++   K    D    +  +M R     T  T + ++   A + + +
Sbjct: 154 LTGYRHSPELYNLMVDILGKCRSFDSMSELVEEMARLEGYVTLETMTKVMRRLARARKHE 213

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS--DV 520
            A++ +  M   G++   +    L+  L K   V+ A K++LE K    S+ +S+   +V
Sbjct: 214 DAIEAFGRMEKFGVKKDTAALNVLIDALVKGDSVEHAHKVVLEFKG---SIPLSSRSFNV 270

Query: 521 LM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           LM  + +    D+A + +  M   G   + F      E+      +     +LE   E+ 
Sbjct: 271 LMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRENG 330

Query: 580 AKVDLVLYTSVLAHL 594
              + V YTSV+ HL
Sbjct: 331 CPPNAVTYTSVMLHL 345


>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
          Length = 702

 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 115/496 (23%), Positives = 223/496 (44%), Gaps = 43/496 (8%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K+  LE S   F ++L+   K D  ++  +++     G+P +A E +E M 
Sbjct: 178 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMS 237

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  D  T   MI +  ++G +D A+ L+   +   +R     F++L+   G +G  D
Sbjct: 238 SFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYD 297

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + +Y EM+  G +P+  +Y  LI+S  +A +   A  ++ ++   GF PN+  +  ++
Sbjct: 298 GCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 357

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GL 476
            ++ ++   D A++I+ +M+  G   T   Y+ LL M A  G VD A +++  M +    
Sbjct: 358 RAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETC 417

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P   T+++L+T+ A    V  A   LL+M+  G+   +   + V+  Y K   VD  +R
Sbjct: 418 DPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVR 477

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   GI  ++      F  C+ N + ++    +   +    K    L   V+  LV
Sbjct: 478 TFDQVLELGITPDD-----RFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKL-GQVVKMLV 531

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
              +EQN                    G+F     +K+       E    I  ++++   
Sbjct: 532 ---EEQNCEE-----------------GVF-----KKE-----ASELIDSIGSDVKKA-- 559

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
             ++N L++  V + ++ RA  + ++  E  ++   +       WSL +++LS+GAAL A
Sbjct: 560 --YLNCLIDLCVNLNKLERACEILQLGLEYDIY-TGLQSKSATQWSLHLKSLSLGAALTA 616

Query: 716 VMHTLHRFRKRMLYYG 731
           +   ++   +  L  G
Sbjct: 617 LHVWMNDLSEAALESG 632



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 128/292 (43%), Gaps = 40/292 (13%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           M  +  A     + D +LSL+  A+ + W +     +  L  +   S ++DG L++++EM
Sbjct: 248 MAAMIDAYGRAGNVDMALSLYDRARTEKWRIDA-VTFSTLIRIYGVSGNYDGCLNIYEEM 306

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
                K  + +   YNR+I  + +A +                                 
Sbjct: 307 KALGVKPNLVI---YNRLIDSMGRAKR--------------------------------- 330

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
             P++A  IY+ +     + + STY  ++ +  ++   D A+ +++EMKE+    +  ++
Sbjct: 331 --PWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILY 388

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
            +L+      G +D + +++ +M+ C    P +  + SLI  YA +G++  A     +MR
Sbjct: 389 NTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMR 448

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            AGF P   + T +I+ + K+ ++D  +  F  +   G  P      CLL +
Sbjct: 449 EAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNV 500



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%)

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y   ++ + K+  L+ + +L+DEM   G +P+   FT II    ++G    A+  F  M
Sbjct: 177 LYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM 236

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   T + +++ +  +G VD A+ LY+   +   R    T++ L+ +       
Sbjct: 237 SSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 296

Query: 497 DVAAKILLEMKTMG 510
           D    I  EMK +G
Sbjct: 297 DGCLNIYEEMKALG 310


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 198/433 (45%), Gaps = 40/433 (9%)

Query: 111 SVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQA 170
           +V PG     +  G+ +    A  V ++V      +  P     LD L        + + 
Sbjct: 74  TVVPGAAQEGLAPGVSEA---AERVCRVVSAQPEHRIAP----VLDALGVTVSPQLVAEV 126

Query: 171 LKVINDSDT-SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS- 228
           LK ++++   +L+ FRWA+RQ  +    E +  L + L + + F  + SL + M   S  
Sbjct: 127 LKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCL 186

Query: 229 ------------------KNGISLF------------SAYNRVIQYLAKADKLEMSYCCF 258
                             K  +  F            S YN +I  L+K+ +++ ++  F
Sbjct: 187 SKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIF 246

Query: 259 KKVLDSDCKI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           K++      I D ++Y VLM  + ++        +Y+ M       D   Y ++I +  K
Sbjct: 247 KEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCK 306

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           SG+ D AIK+F EM+E    PS +++  L++ +G   RLD ++K +   +  G     P 
Sbjct: 307 SGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPT 366

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
             ++I +Y +A +   A ++ DEMR +G  PN   + +I+    KS K++ A ++F  ME
Sbjct: 367 CNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRME 426

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           R G  P  +TY+ ++ M  S+ +VD A+K++  M   G+ P +  ++AL+  L     ++
Sbjct: 427 RDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLE 486

Query: 498 VAAKILLEMKTMG 510
            A     EM   G
Sbjct: 487 EACVYFQEMLDKG 499



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 153/366 (41%), Gaps = 23/366 (6%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I +L K  +      L + M+ R+   S + F  +V    +A ++  +++ + +M   G
Sbjct: 160 LIEALGKIKQFRLVWSLVEAMRCRSCL-SKDTFKIIVRRYARARKVKEAVETFEKMSSFG 218

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG-FRPNFGLFTMIIESHAKSGKLDIA 429
            +     Y  LI+  +K+ ++  A  ++ EM+  G F P+   +T+++E       L + 
Sbjct: 219 LKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLML 278

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
            +++ +M  AG  P    Y  L+     SG+ D A+K+++ M  +G  P    Y  L+  
Sbjct: 279 KAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLING 338

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
           L   + +D A K     K  G+ ++V + + V+  Y +     HA + +  M  SGI  N
Sbjct: 339 LGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPN 398

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
                 +    +K+   E A  L +       + +L  YT ++          NER  MA
Sbjct: 399 TRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFC-----SNERVDMA 453

Query: 609 ILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGI--DYELEEGAARYFVNVLLNYL 666
           +    + K    L            P +       +G+  D  LEE A  YF  +L   +
Sbjct: 454 LKVWKQMKEKGVL------------PCMHMFSALINGLCFDNRLEE-ACVYFQEMLDKGI 500

Query: 667 VLMGQI 672
              GQ+
Sbjct: 501 RPPGQL 506



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
           D ++ +F   + +S  +P    Y ML + L      D  L  F      S ++G  +   
Sbjct: 311 DEAIKVFHEME-ESGCMPSPHVYCMLINGLGSMERLDEALKYF----QLSKESGFPMEVP 365

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             N VI    +A +   ++    ++  S    +T++Y++++   +      +A+ +++ M
Sbjct: 366 TCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRM 425

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+  C  + +TY +M+     + R+D A+K++++MKE+   P  ++F++L++ +    RL
Sbjct: 426 ERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRL 485

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
           + +   + EM   G RP   ++ +L E+  + G++  A
Sbjct: 486 EEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLA 523


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 2/334 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R +   P    Y  L      + + DG   +   M  +   N       +N ++  L KA
Sbjct: 179 RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG--NAKPNLVTFNSMVNGLCKA 236

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            ++E +   F +++      D  SYN L++ +   G  +++  ++  M +     D  T+
Sbjct: 237 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTF 296

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I +  K+G L+ A+ L  +M+ER  R +   F +L+D   K G LD ++    EM+ 
Sbjct: 297 TSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 356

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           CG +PS   Y +LI  Y K G++D A  L  EM     +P+   ++ II  + K G LD 
Sbjct: 357 CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDS 416

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +   M + G LP   TYS L+       +++ A +L+ +M   G++P   TYT L+ 
Sbjct: 417 AFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 476

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
              K   V+ A  +  EM   G   DV    VL+
Sbjct: 477 GHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLI 510



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 167/372 (44%), Gaps = 2/372 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM- 296
           YN +++ L    +LE +      +  + C  +  +YN L+  F   G    A  +   M 
Sbjct: 155 YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMR 214

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+G    +  T+  M+  L K+GR++ A K+F EM      P    + +L+    K G L
Sbjct: 215 EEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCL 274

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             S+ V+ EM   G  P    + SLI +  KAG L+ A+ L  +MR  G R N   FT +
Sbjct: 275 HESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTAL 334

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K G LD A+    +M + G  P+   Y+ L+  +   G++D A +L   M +  +
Sbjct: 335 IDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRV 394

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +P + TY+ +++   K   +D A ++  +M   G   D ++ S ++    ++  ++ A  
Sbjct: 395 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 454

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M   G++ + F    L +   K    E A  L +  +      D+V Y+ ++  L 
Sbjct: 455 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLS 514

Query: 596 RCQDEQNERHLM 607
           +    +    L+
Sbjct: 515 KSARTKEAHRLL 526



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 163/332 (49%), Gaps = 5/332 (1%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN ++    +  LP  A     SM +   + +  TY +++ +L   GRL+ A+ +  +M
Sbjct: 120 AYNAVLLALSDASLP-SARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDM 178

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGK 390
           +     P+   + +LV +  +AG LD + +V   M+  G+ +P+   + S++    KAG+
Sbjct: 179 RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 238

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           ++ A +++DEM   G  P+   +  ++  + K G L  ++++F++M + G +P   T++ 
Sbjct: 239 MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 298

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L+     +G ++ A+ L   M   GLR    T+TAL+    K+  +D A   + EM+  G
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 358

Query: 511 YSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
               V   + L+  Y K G +D A   +R M +  ++ +      +     K    +SA 
Sbjct: 359 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 418

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
            L +  ++     D + Y+S++  L  C++++
Sbjct: 419 QLNQKMLKKGVLPDAITYSSLIRGL--CEEKR 448



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 18/232 (7%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y  L D   +  + +  LSL DEM+    K  +     Y+ +I  L+K+ + + +
Sbjct: 466 PDEFTYTTLIDGHCKEGNVEKALSLHDEMIR---KGVLPDVVTYSVLINGLSKSARTKEA 522

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTL---------------FLNKGLPYKAFEIYESMEKG 299
           +    K+   D   D   Y+ LM                 F  KGL  +A ++Y+SM   
Sbjct: 523 HRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDR 582

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
              LDGS Y ++I    + G +  A+   ++M    F P+     SLV  + + G +  +
Sbjct: 583 NWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 642

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
                ++  C     A    +LI+   K G +D  + +   M   G  P+ G
Sbjct: 643 DNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPSSG 694



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 15/256 (5%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I+ L +  +L  +   F+ +L    + D  +Y  L+     +G   KA  +++ M 
Sbjct: 436 YSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 495

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS---------------FNI 342
           +     D  TY ++I  L+KS R   A +L  ++   +  P                F  
Sbjct: 496 RKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKS 555

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
             +L+      G +  + KVY  M     +    +Y  LI  + + G +  AL    +M 
Sbjct: 556 VVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQML 615

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
            +GF PN      ++    + G +  A +   D+     L        L++++   G VD
Sbjct: 616 RSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVD 675

Query: 463 SAMKLYNSMTSAGLRP 478
           + + +   M   GL P
Sbjct: 676 ALIDVLCGMARDGLLP 691


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 176/362 (48%), Gaps = 1/362 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           VI  L  + +   +   F+++ ++  +  T++YN L+  ++  G    A  +   MEK  
Sbjct: 282 VILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAG 341

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              D  TY L+I   A +GR ++A  + +EM+  N +P+  +F+ ++ +    G    S 
Sbjct: 342 VKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSF 401

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +V  +M+  G +P    Y  +I+++ K   LD A+  ++ M   G  P+   +  +I+ H
Sbjct: 402 QVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCH 461

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            KSG+ D+A  +F++M++ G+ P  +TY+ ++       + +      + M S GL+P  
Sbjct: 462 CKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNS 521

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRF 539
            TYT L+ +  K      A + L  +K+ G+    +  + L+  Y + G  + A+   R 
Sbjct: 522 ITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRL 581

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           M + G+  +   +  L  +  ++     A  +L+   E+  + D+V YT+++  L+R + 
Sbjct: 582 MTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEK 641

Query: 600 EQ 601
            Q
Sbjct: 642 FQ 643



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 176/400 (44%), Gaps = 16/400 (4%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC--C 257
           Y  L      + D +  L+L  +M  D  +     F  Y+ +IQYL +++K++       
Sbjct: 172 YNALIGACARNGDVEKALNLMSKMRRDGYQPD---FVNYSSIIQYLTRSNKIDSPILQKL 228

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + ++     +ID    N ++  F   G P +A       +    +   ST   +I +L  
Sbjct: 229 YAEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGN 288

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           SGR   A  LF+E++E    P    + +L+    + G L  +  V  EM+  G +P    
Sbjct: 289 SGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQT 348

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  LI+ YA AG+ ++A  +  EM  +  +PN  +F+ I+ ++   G+   +  +  DM+
Sbjct: 349 YSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMK 408

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
            +G  P    Y+ +++       +D AM  +  M S G+ P + T+  L+    K    D
Sbjct: 409 SSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHD 468

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW------LRFMGSSGIRTNNFI 551
           +A ++  EM+  GYS  ++  ++++      S+    RW      L  M S G++ N+  
Sbjct: 469 MAEELFSEMQQRGYSPCITTYNIMI-----NSMGEQQRWEQVTAFLSKMQSQGLQPNSIT 523

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              L +   K+  +  A   LE    +  K    +Y +++
Sbjct: 524 YTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALI 563



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 145/327 (44%), Gaps = 3/327 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P ++ Y +L DV   +  ++    +  EM   + +    +FS   R++       + + S
Sbjct: 344 PDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFS---RILANYRDKGEWQKS 400

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +   K +  S  + D   YNV++  F        A   +E M       D  T+  +I  
Sbjct: 401 FQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDC 460

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             KSGR D A +LF EM++R + P    +  +++SMG+  R +       +MQ  G +P+
Sbjct: 461 HCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPN 520

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           +  Y +L++ Y K+G+   A+   + ++  GF+P   ++  +I ++A+ G  ++A++ F 
Sbjct: 521 SITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFR 580

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G  P+    + L+       +   A  +   M    + P + TYT L+  L + +
Sbjct: 581 LMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVE 640

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVL 521
                  +  EM   G + D  A  +L
Sbjct: 641 KFQKVPAVYEEMVASGCTPDRKARAML 667



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 170/368 (46%), Gaps = 6/368 (1%)

Query: 218 SLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +LF+E+     +NG+   + AYN +++   +   L+ +     ++  +  K D Q+Y++L
Sbjct: 297 ALFEEI----RENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLL 352

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           + ++ + G    A  + + ME      +   +  ++ +    G    + ++ ++MK    
Sbjct: 353 IDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGV 412

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P  + +  ++D+ GK   LD +M  +  M   G  P    + +LI+ + K+G+ D A  
Sbjct: 413 QPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEE 472

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+ EM+  G+ P    + ++I S  +  + +   +  + M+  G  P   TY+ L++++ 
Sbjct: 473 LFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYG 532

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            SG+   A++    + S G +P  + Y AL+   A+R L ++A      M T G +  + 
Sbjct: 533 KSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLL 592

Query: 517 ASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           A + L+  + +D     A   L++M  + I  +      L ++ ++   ++    + E  
Sbjct: 593 ALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEM 652

Query: 576 VESAAKVD 583
           V S    D
Sbjct: 653 VASGCTPD 660



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 170/380 (44%), Gaps = 19/380 (5%)

Query: 272 SYNVLMTLFLNK-GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           SY +L ++ +N  G   K +E +   ++    L   TY  +I + A++G ++ A+ L  +
Sbjct: 137 SYELLYSILINALGRSEKLYEAFLLSQRQ--VLTPLTYNALIGACARNGDVEKALNLMSK 194

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSM--KVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           M+   ++P F  ++S++  + ++ ++D+ +  K+Y E++         +   +I  ++KA
Sbjct: 195 MRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKA 254

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G    A+R     +  G  P       +I +   SG+   A ++F ++   G  P    Y
Sbjct: 255 GDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAY 314

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + LL+ +  +G +  A  + + M  AG++P   TY+ L+ + A     + A  +L EM+ 
Sbjct: 315 NALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEA 374

Query: 509 MGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
                +    S +L  Y   G    + + L+ M SSG++ +      + ++  K    + 
Sbjct: 375 SNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDH 434

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA--ILSATKHKAHAFLCGLF 625
           A    E  +      D+V + +    L+ C  +   RH MA  + S  + + ++     +
Sbjct: 435 AMATFERMLSEGIPPDIVTWNT----LIDCHCKSG-RHDMAEELFSEMQQRGYSPCITTY 489

Query: 626 T------GPEQRKQPVLSFV 639
                  G +QR + V +F+
Sbjct: 490 NIMINSMGEQQRWEQVTAFL 509


>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 890

 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 138/578 (23%), Positives = 237/578 (41%), Gaps = 24/578 (4%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD +L LF EM HD+S +     + YN ++   A     + S      +L++    DT S
Sbjct: 251 FDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVS 310

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y  ++  F + G   +A E++  M     + D S Y  ++ +  + G    A+ + ++M+
Sbjct: 311 YRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQ 370

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P+   +  L+D  G+ GR D   +++ EM+     P    Y  L   +   G   
Sbjct: 371 ADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-TAVPPDTATYNVLFRVFGDGGFFK 429

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             + L+ +M   G +P+      ++ +    G    A  +   M R G +PT   Y+ L+
Sbjct: 430 EVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLV 489

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGY 511
           E    +   + A   +N MT  G  P L TY AL    A+  L   A  I   M    G 
Sbjct: 490 EALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGI 549

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
                + D L+  Y +   +D A++    M  S    +   +  +  + C+   + ES K
Sbjct: 550 QKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDES-K 608

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA-HAFLCGLFTGP 628
              E    S     ++ Y  +L+   R     +   L+  +   +  + H  +  L  G 
Sbjct: 609 EQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASLIKGE 668

Query: 629 --EQRKQPVLSFVRE--FFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYE 684
             +     ++ +V E     G DY         F N LL  L   GQ  RA  V   A +
Sbjct: 669 YDDSSNWQMVEYVLENSTMEGCDYSFR------FFNALLGVLWWFGQKGRAARVLDQAVK 722

Query: 685 NKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPT 744
             LFP+ +  D  + WSLDV  +S+G AL+AV   L++   R++    +P+   +V    
Sbjct: 723 FGLFPE-LYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDEDLPQLASVV---- 777

Query: 745 LKIVIAQM-LSSVESPFEVSKVVLRAPGDSVMEWFKKP 781
             ++  +M  S+V     ++KVV     D++   F  P
Sbjct: 778 --VLRGEMEKSTVTRGLPIAKVVYSFLNDTLSASFHFP 813



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/465 (21%), Positives = 175/465 (37%), Gaps = 78/465 (16%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSLSLFRWAKRQ 190
           E+E+ +D+L  +P    I + L+                      D   SL LF++ +RQ
Sbjct: 95  EVESLIDRLSNLPPRGSIARCLETARHRLTLQDFAAVYREFSRRGDWQRSLRLFKYMQRQ 154

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           SW  P +  + ++  VL   R    +L    E+ HD          A +R          
Sbjct: 155 SWCRPDEHIHAIVIGVLG--RQGPALLDKCLEVFHD--------LPAESRT--------- 195

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
                                SY  L+  +    L  +A  + + M+    +   +TY  
Sbjct: 196 -------------------ALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNT 236

Query: 311 MIPSLAKSGR----LDAAIKLFQEMKER---NFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           ++ + A++       D  + LF EM+     + RP    + +L+ +       D S  + 
Sbjct: 237 VLAACARATDPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLL 296

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
             M   G  P    Y  +++++A AG L  A  L+ EM   G   +   +  ++E+H + 
Sbjct: 297 HTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRV 356

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G    A+++   M+  G  PT +TY  LL+++   G+ D   +L+  M +A + P  +TY
Sbjct: 357 GATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA-VPPDTATY 415

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV-DHALRWLRFMGS 542
             L  +           ++  +M   G   D+   + +M     G +   A   L +M  
Sbjct: 416 NVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTR 475

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAK------------PLLETY 575
            G+         L E+    A+YE A             P LETY
Sbjct: 476 EGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETY 520


>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 868

 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 138/578 (23%), Positives = 237/578 (41%), Gaps = 24/578 (4%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD +L LF EM HD+S +     + YN ++   A     + S      +L++    DT S
Sbjct: 229 FDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVS 288

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y  ++  F + G   +A E++  M     + D S Y  ++ +  + G    A+ + ++M+
Sbjct: 289 YRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQ 348

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P+   +  L+D  G+ GR D   +++ EM+     P    Y  L   +   G   
Sbjct: 349 ADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-TAVPPDTATYNVLFRVFGDGGFFK 407

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             + L+ +M   G +P+      ++ +    G    A  +   M R G +PT   Y+ L+
Sbjct: 408 EVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLV 467

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGY 511
           E    +   + A   +N MT  G  P L TY AL    A+  L   A  I   M    G 
Sbjct: 468 EALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGI 527

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
                + D L+  Y +   +D A++    M  S    +   +  +  + C+   + ES K
Sbjct: 528 QKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDES-K 586

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA-HAFLCGLFTGP 628
              E    S     ++ Y  +L+   R     +   L+  +   +  + H  +  L  G 
Sbjct: 587 EQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASLIKGE 646

Query: 629 --EQRKQPVLSFVRE--FFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYE 684
             +     ++ +V E     G DY         F N LL  L   GQ  RA  V   A +
Sbjct: 647 YDDSSNWQMVEYVLENSTMEGCDYSFR------FFNALLGVLWWFGQKGRAARVLDQAVK 700

Query: 685 NKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPT 744
             LFP+ +  D  + WSLDV  +S+G AL+AV   L++   R++    +P+   +V    
Sbjct: 701 FGLFPE-LYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDEDLPQLASVV---- 755

Query: 745 LKIVIAQM-LSSVESPFEVSKVVLRAPGDSVMEWFKKP 781
             ++  +M  S+V     ++KVV     D++   F  P
Sbjct: 756 --VLRGEMEKSTVTRGLPIAKVVYSFLNDTLSASFHFP 791



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 99/465 (21%), Positives = 175/465 (37%), Gaps = 78/465 (16%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVI-------------------NDSDTSLSLFRWAKRQ 190
           E+E+ +D+L  +P    I + L+                      D   SL LF++ +RQ
Sbjct: 73  EVESLIDRLSNLPPRGSIARCLETARHRLTLQDFAAVYREFSRRGDWQRSLRLFKYMQRQ 132

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           SW  P +  + ++  VL   R    +L    E+ HD          A +R          
Sbjct: 133 SWCRPDEHIHAIVIGVLG--RQGPALLDKCLEVFHD--------LPAESRT--------- 173

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
                                SY  L+  +    L  +A  + + M+    +   +TY  
Sbjct: 174 -------------------ALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNT 214

Query: 311 MIPSLAKSGR----LDAAIKLFQEMKER---NFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           ++ + A++       D  + LF EM+     + RP    + +L+ +       D S  + 
Sbjct: 215 VLAACARATDPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLL 274

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
             M   G  P    Y  +++++A AG L  A  L+ EM   G   +   +  ++E+H + 
Sbjct: 275 HTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRV 334

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G    A+++   M+  G  PT +TY  LL+++   G+ D   +L+  M +A + P  +TY
Sbjct: 335 GATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA-VPPDTATY 393

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV-DHALRWLRFMGS 542
             L  +           ++  +M   G   D+   + +M     G +   A   L +M  
Sbjct: 394 NVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTR 453

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAK------------PLLETY 575
            G+         L E+    A+YE A             P LETY
Sbjct: 454 EGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETY 498


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 136/615 (22%), Positives = 259/615 (42%), Gaps = 30/615 (4%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           L D      D D +L + D MV  S    I+L + YN +I  L K  K+E +    K ++
Sbjct: 250 LIDGFMREGDIDEVLRIKDVMV--SCGIPINLIT-YNVLIHGLCKFGKMEKAAEILKGMI 306

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
              CK +++++ +L+  +  +    +A E+ + MEK        +Y  MI  L     L 
Sbjct: 307 TLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLS 366

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A KL ++M     +P+  ++++L+      GR++ + ++   M   G  P    Y ++I
Sbjct: 367 LANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAII 426

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
              +KAGK++ A     E++  G +P+   F   I  ++K+GK+  A   F +M   G +
Sbjct: 427 SCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM 486

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P    Y+ L+  H  +G +  A+ ++  + + G+ P + T +A +  L K   V  A K+
Sbjct: 487 PNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 546

Query: 503 LLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             E+K  G   DV + S ++  + K G V+ A      M   GI  N FI   L +   K
Sbjct: 547 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 606

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
           +   + A+ L +   E   + D V Y++++    + ++      L   + +   + H+F+
Sbjct: 607 SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFV 666

Query: 622 -CGLFTG--PEQRKQPVLSFVREFFHGIDYELEEG-AARYFVNVLLNYLVLMGQINRARC 677
              L  G   E   +  ++  RE        L++G A     N L++      +I  A  
Sbjct: 667 YNALVHGCCKEGDMEKAMNLFREM-------LQKGFATTLSFNTLIDGYCKSCKIQEASQ 719

Query: 678 VWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRI 737
           +++     ++ P  + +   I W      +     L   M   +     + Y  ++    
Sbjct: 720 LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 779

Query: 738 KLVTGPTLKIVIAQMLSSVESPFEVSK---VVLRAPGDSVMEWFK------------KPI 782
           KL     +  +  +M++    P EV+    +      D+++E FK            K  
Sbjct: 780 KLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 839

Query: 783 VQQFLLNEIPSRADI 797
           +   L+  +  R D+
Sbjct: 840 IHDLLITALCKREDL 854



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 179/408 (43%), Gaps = 4/408 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    + +L +      +    L L DEM     +N +    +Y  +I  L     L ++
Sbjct: 312 PNSRTFCLLIEGYCREHNMGRALELLDEM---EKRNLVPSAVSYGAMINGLCHCKDLSLA 368

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               +K+  S  K +   Y+ L+  + ++G   +A  + + M     + D   Y  +I  
Sbjct: 369 NKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISC 428

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L+K+G+++ A     E++ R  +P    F + +    K G++  + K + EM   G  P+
Sbjct: 429 LSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 488

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
            P+Y  LI  + KAG L  AL ++  +   G  P+    +  I    K+G++  A+ +F+
Sbjct: 489 NPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS 548

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +++  G +P   TYS L+      G+V+ A +L++ M   G+ P +  Y AL+  L K  
Sbjct: 549 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 608

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +  A K+   M   G   D V+ S ++  Y K  +V  A      M S G++ ++F+  
Sbjct: 609 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 668

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
            L   C K    E A  L    ++      L   T +  +   C+ ++
Sbjct: 669 ALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 716



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 187/429 (43%), Gaps = 16/429 (3%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           P+++T    +  + K   + +ALKV ++            ++   VP    Y  L     
Sbjct: 522 PDVQTCSAFIHGLLKNGRVQEALKVFSE-----------LKEKGLVPDVFTYSSLISGFC 570

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           +  + +    L DEM        I +   YN ++  L K+  ++ +   F  + +   + 
Sbjct: 571 KQGEVEKAFELHDEMCLKGIAPNIFI---YNALVDGLCKSGDIQRARKLFDGMPEKGLEP 627

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D+ +Y+ ++  +       +AF ++  M           Y  ++    K G ++ A+ LF
Sbjct: 628 DSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLF 687

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM ++ F  + + F +L+D   K+ ++  + +++ EM      P    Y ++I+ + KA
Sbjct: 688 REMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKA 746

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           GK++ A  L+ EM+      +   +T ++  + K G+     ++F  M   G  P   TY
Sbjct: 747 GKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTY 806

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             ++  H     +  A KL + +   G+    + +  L+T L KR+ +  A+K+L EM  
Sbjct: 807 GLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGE 866

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
           +G    ++A   L+  + + G +D A R    + S G+  +   +  L    + +   E 
Sbjct: 867 LGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSED 926

Query: 568 AKPLLETYV 576
           A+ L++  V
Sbjct: 927 ARNLIKQLV 935



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 117/241 (48%), Gaps = 1/241 (0%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY ++   L ++ R++ A   F+EM++   +P +N  ++L+D   + G +D  +++   M
Sbjct: 211 TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVM 270

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
             CG   +   Y  LI    K GK++ A  +   M   G +PN   F ++IE + +   +
Sbjct: 271 VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNM 330

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A+ +  +ME+   +P+  +Y  ++        +  A KL   MT +GL+P +  Y+ L
Sbjct: 331 GRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTL 390

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGI 545
           +   A    ++ A ++L  M   G + D+   + ++  + K G ++ A  +L  +   G+
Sbjct: 391 IMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL 450

Query: 546 R 546
           +
Sbjct: 451 K 451



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 22/287 (7%)

Query: 308 YELMIPSLAKSGRLDAAIKLF------------------QEMKERNFRPSFNIFASLVDS 349
           ++++I S  + G LD A  +F                  + M E+   P+   +  +   
Sbjct: 159 FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITAG 218

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + +A R++ +   + EMQ  G +P      +LI+ + + G +D  LR+ D M   G   N
Sbjct: 219 LCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPIN 278

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              + ++I    K GK++ A  I   M   G  P   T+  L+E +     +  A++L +
Sbjct: 279 LITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLD 338

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDG 528
            M    L P   +Y A++  L   K + +A K+L +M   G   +V   S ++M Y  +G
Sbjct: 339 EMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEG 398

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA--LYESAKPLLE 573
            ++ A R L  M  SG+  + F    +  SC+  A  + E++  LLE
Sbjct: 399 RIEEARRLLDGMSCSGVAPDIFCYNAII-SCLSKAGKMEEASTYLLE 444



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 100/501 (19%), Positives = 203/501 (40%), Gaps = 44/501 (8%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +   L +A ++  +   F+++  +  K D  + + L+  F+ +G   +   I + M
Sbjct: 211 TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVM 270

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                 ++  TY ++I  L K G+++ A ++ + M     +P+   F  L++   +   +
Sbjct: 271 VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNM 330

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++++  EM+     PSA  Y ++I        L  A +L ++M  +G +PN  +++ +
Sbjct: 331 GRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTL 390

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I  +A  G+++ A  +   M  +G  P    Y+ ++   + +G+++ A      +   GL
Sbjct: 391 IMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL 450

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P   T+ A +   +K   +  AAK   EM   G   +     VL+  + K G++  AL 
Sbjct: 451 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 510

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             R + + G+  +           +KN   + A  +     E     D+  Y+S+++   
Sbjct: 511 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF- 569

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
            C+  + E+           + H  +C                      GI       A 
Sbjct: 570 -CKQGEVEKAF---------ELHDEMC--------------------LKGI-------AP 592

Query: 656 RYFV-NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALI 714
             F+ N L++ L   G I RAR ++    E  L P ++ +   I       N++   +L 
Sbjct: 593 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 652

Query: 715 AVMHTL----HRFRKRMLYYG 731
             M +     H F    L +G
Sbjct: 653 HEMPSKGVQPHSFVYNALVHG 673


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 118/474 (24%), Positives = 208/474 (43%), Gaps = 21/474 (4%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I  L KA KL+ +Y    ++ D         +N ++      G    A   ++++ 
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVA 92

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGRL 356
             +C+ D  T+ +++ +L KSGR++ A ++F+ M       P+   + ++++ + K G+L
Sbjct: 93  GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKL 152

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++++   M   G  P+   Y  L+E   KAG+ D    L  EM   GF+P+  ++  +
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    KS +LD A+ +   M R+G  PT  TY+ L+E+   S QVD A +L   M+  G 
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGC 272

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVD---- 531
            P +  Y  ++  L +   +D A  +L +M       DV + S ++    KD  VD    
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWK 332

Query: 532 --HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
              A   L  M  +G   N      + E   +    + A  LL   ++S    DL  ++ 
Sbjct: 333 LEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSM 392

Query: 590 VLAHLVRCQDEQNERHLMAILSATKHKAH-----AFLCGLFTGPEQRKQPVLSFVREFFH 644
           V+  L +  D      +  ++S  + K +     A + GL  G E  K      VR F  
Sbjct: 393 VIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKA-----VRVFEL 447

Query: 645 GIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHI 698
            ++     G A Y  N +L+ L  +G+I  A  + +     + FP    +   I
Sbjct: 448 MVE-SFRPGVATY--NSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALI 498



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 157/328 (47%), Gaps = 7/328 (2%)

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N  + L +  G   +A +++    +  C  +  TY  +I  L K+G+LD A +L  EM++
Sbjct: 2   NCALNLLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R   P   +   ++  + KAGR   ++  +  + G    P    +  L+++  K+G+++ 
Sbjct: 59  RGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 394 ALRLWDEMRIAG-FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
           A ++++ M  +    PN   +T +I    K GKLD A+ +   M   G  P   TYS L+
Sbjct: 119 AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLV 178

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL-LEMKTMGY 511
           E    +G+ D    L   MT  G +P +  Y  LL  L K + +D A +++ L +++  Y
Sbjct: 179 EGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCY 238

Query: 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
              V+ + ++ ++ +   VD A R ++ M   G   +      +     ++A  + A+ L
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQAL 298

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQD 599
           L+  V +    D++ Y++++  L  C+D
Sbjct: 299 LKQMVAARCVPDVITYSTIIDGL--CKD 324



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 153/365 (41%), Gaps = 47/365 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L + L ++   D   +L  EM     +  + +   YN ++  L K+ +L+ +    +
Sbjct: 174 YSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIM---YNTLLNGLCKSRRLDEALELVQ 230

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++ S C     +YN LM LF       +AF + + M +  C  D   Y  +I  L +  
Sbjct: 231 LMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDA 290

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV--------YMEMQGCGH 371
           RLD A  L ++M      P    +++++D + K  R+D   K+         M+  GC  
Sbjct: 291 RLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC-- 348

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+A  Y  +IE   +A K   AL L   M  +   P+   F+M+I S  KS  LD A  
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYK 408

Query: 432 IFTDMERAGFLPTP----------------------------------STYSCLLEMHAS 457
           IF  M      P P                                  +TY+ +L+    
Sbjct: 409 IFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCG 468

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G+++ A+++   M      P  ++Y AL+  L +   V+ A ++   ++  G++++V  
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGV 528

Query: 518 SDVLM 522
            +VL+
Sbjct: 529 YNVLV 533



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 165/378 (43%), Gaps = 14/378 (3%)

Query: 143 NRWKWGPELETQLDKLQFVPKMVHITQALKVINDS---DTSLSLFRWAKRQSWYVPGDEC 199
            R   G  L  ++ +  F P ++     L  +  S   D +L L +   R   Y P    
Sbjct: 185 GRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCY-PTVVT 243

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L ++   S+  D    L   M   S +        YN VI  L +  +L+ +    K
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVM---SERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNK---GLPYK---AFEIYESMEKGECSLDGSTYELMIP 313
           +++ + C  D  +Y+ ++            +K   A EI E M++  C  +  TY ++I 
Sbjct: 301 QMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIE 360

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L ++ +   A+ L + M +    P  + F+ ++ S+ K+  LD + K++  M     +P
Sbjct: 361 GLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKP 420

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y +LI+  +K G++D A+R++ E+ +  FRP    +  +++     G+++ A+ + 
Sbjct: 421 NPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMV 479

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M      P  ++Y  L+        V+ A +L+ ++ + G    +  Y  L+  L K+
Sbjct: 480 EGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKK 539

Query: 494 KLVDVAAKILLEMKTMGY 511
           K +  A  +  ++   GY
Sbjct: 540 KRLSDAHGVANKLIEAGY 557



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 5/262 (1%)

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           +AG+   +++++ E +     P+   Y SLI    KAGKLD A  L DEMR  G  P   
Sbjct: 10  RAGQHGQAVQLFREER---CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVA 66

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           +   +I+   K+G+   A+  F  +      P   T++ L++    SG+V+ A +++ SM
Sbjct: 67  VHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESM 126

Query: 472 -TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGS 529
            TS+   P + TYT ++  L K   +D A ++L  M   G   +V    VL+  + K G 
Sbjct: 127 HTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGR 186

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
            D     L+ M   G + +  +   L     K+   + A  L++  + S     +V Y S
Sbjct: 187 TDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNS 246

Query: 590 VLAHLVRCQDEQNERHLMAILS 611
           ++    R +       L+ ++S
Sbjct: 247 LMELFCRSKQVDRAFRLIQVMS 268



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 7/207 (3%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           + + L     S  +L+L R     S  VP    + M+   L +S D D    +F  M   
Sbjct: 358 VIEGLCRARKSQQALALLRRMI-DSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSER 416

Query: 227 SSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
             K N +    AY  +I  L+K  +++ +   F+ +++S  +    +YN ++      G 
Sbjct: 417 ECKPNPV----AYAALIDGLSKGGEVDKAVRVFELMVESF-RPGVATYNSVLDGLCGVGR 471

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +A  + E M   EC  DG++Y  +I  L +   ++ A +LFQ ++ + F     ++  
Sbjct: 472 IEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNV 531

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHR 372
           LV+ + K  RL  +  V  ++   G++
Sbjct: 532 LVNELCKKKRLSDAHGVANKLIEAGYK 558



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           +Q+   P    Y ++ + L  +R     L+L   M+       +   S+++ VI  L K+
Sbjct: 344 KQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEV---VPDLSSFSMVIGSLCKS 400

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG-ST 307
             L+ +Y  F  + + +CK +  +Y  L+      G   KA  ++E M   E    G +T
Sbjct: 401 HDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV--ESFRPGVAT 458

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  ++  L   GR++ A+++ + M  +   P    + +L+  + +   ++ + +++  ++
Sbjct: 459 YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVE 518

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
             G      +Y  L+    K  +L  A  + +++  AG++
Sbjct: 519 AKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558


>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 702

 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 115/496 (23%), Positives = 223/496 (44%), Gaps = 43/496 (8%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K+  LE S   F ++L+   K D  ++  +++     G+P +A E +E M 
Sbjct: 178 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMS 237

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  D  T   MI +  ++G +D A+ L+   +   +R     F++L+   G +G  D
Sbjct: 238 SFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYD 297

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + +Y EM+  G +P+  +Y  LI+S  +A +   A  ++ ++   GF PN+  +  ++
Sbjct: 298 GCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 357

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GL 476
            ++ ++   D A++I+ +M+  G   T   Y+ LL M A  G VD A +++  M +    
Sbjct: 358 RAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETC 417

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P   T+++L+T+ A    V  A   LL+M+  G+   +   + V+  Y K   VD  +R
Sbjct: 418 DPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVR 477

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   GI  ++      F  C+ N + ++    +   +    K    L   V+  LV
Sbjct: 478 TFDQVLELGITPDD-----RFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKL-GQVVKMLV 531

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
              +EQN                    G+F     +K+       E    I  ++++   
Sbjct: 532 ---EEQNCEE-----------------GVF-----KKE-----ASELIDSIGSDVKKA-- 559

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
             ++N L++  V + ++ RA  + ++  E  ++   +       WSL +++LS+GAAL A
Sbjct: 560 --YLNCLIDLCVNLNKLERACEILQLGLEYDIY-TGLQSKSATQWSLHLKSLSLGAALTA 616

Query: 716 VMHTLHRFRKRMLYYG 731
           +   ++   +  L  G
Sbjct: 617 LHVWMNDLSEAALESG 632



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 128/292 (43%), Gaps = 40/292 (13%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           M  +  A     + D +LSL+  A+ + W +     +  L  +   S ++DG L++++EM
Sbjct: 248 MAAMIDAYGRAGNVDMALSLYDRARTEKWRIDA-VTFSTLIRIYGVSGNYDGCLNIYEEM 306

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
                K  + +   YNR+I  + +A +                                 
Sbjct: 307 KALGVKPNLVI---YNRLIDSMGRAKR--------------------------------- 330

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
             P++A  IY+ +     + + STY  ++ +  ++   D A+ +++EMKE+    +  ++
Sbjct: 331 --PWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILY 388

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
            +L+      G +D + +++ +M+ C    P +  + SLI  YA +G++  A     +MR
Sbjct: 389 NTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMR 448

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            AGF P   + T +I+ + K+ ++D  +  F  +   G  P      CLL +
Sbjct: 449 EAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNV 500



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%)

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y   ++ + K+  L+ + +L+DEM   G +P+   FT II    ++G    A+  F  M
Sbjct: 177 LYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM 236

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   T + +++ +  +G VD A+ LY+   +   R    T++ L+ +       
Sbjct: 237 SSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 296

Query: 497 DVAAKILLEMKTMG 510
           D    I  EMK +G
Sbjct: 297 DGCLNIYEEMKALG 310


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 124/568 (21%), Positives = 249/568 (43%), Gaps = 42/568 (7%)

Query: 57  QNFVKDAIFFRKPNYVRSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGF 116
           + F +D+++  K   +R++ + K    +KC             GS+   G+G +    GF
Sbjct: 35  EKFKRDSVYIDKNGRLRNF-NHKKVSRKKC-------------GSL--RGRGWK-YGSGF 77

Query: 117 DDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH-------ITQ 169
            D +       P L+ +A  +I++ V +   G E E+    L  +P  +        +  
Sbjct: 78  VDGIF------PVLSPTA-QQILDYVEK---GVESESIWGSLDMLPPTLDAWDDIFTVAV 127

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
            L++    D+ +S+ RW   +S + P   CY +L +   +   +    S + +++     
Sbjct: 128 QLRMRKQWDSIISICRWILLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARC- 186

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
             I     Y  +I+    +  LE +   F ++ +         YN  +   +  G   KA
Sbjct: 187 --IPTEDTYALLIKAYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKA 244

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            EI++ M+K  C     TY ++I    K+G+   A+KLF EM   + +P+   + +LV++
Sbjct: 245 EEIFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNA 304

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
             + G  + + +V+ +MQ  G  P    Y +L+E+Y++AG    A  ++  M+  G  P+
Sbjct: 305 FAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPD 364

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              + ++++++ K+G  D A ++F DM+R G  PT  ++  LL  ++  G V+   ++ N
Sbjct: 365 RASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILN 424

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
            M  +GL+       ++L L  +        ++L  M+   Y  D+S  ++L+  Y + G
Sbjct: 425 QMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAG 484

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
            ++      + + S G++ +         +  K  LY     + E  ++     D     
Sbjct: 485 FIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAK 544

Query: 589 SVLAHLVRCQDEQNERHLMAILSATKHK 616
            +LA    C +E     +  ++  T HK
Sbjct: 545 VLLAA---CSNEDQTEQVTTVIR-TMHK 568


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 118/474 (24%), Positives = 208/474 (43%), Gaps = 21/474 (4%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I  L KA KL+ +Y    ++ D         +N ++      G    A   ++++ 
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVA 92

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGRL 356
             +C+ D  T+ +++ +L KSGR++ A ++F+ M       P+   + ++++ + K G+L
Sbjct: 93  GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKL 152

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++++   M   G  P+   Y  L+E   KAG+ D    L  EM   GF+P+  ++  +
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    KS +LD A+ +   M R+G  PT  TY+ L+E+   S QVD A +L   M+  G 
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGC 272

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVD---- 531
            P +  Y  ++  L +   +D A  +L +M       DV + S ++    KD  VD    
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWK 332

Query: 532 --HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
              A   L  M  +G   N      + E   +    + A  LL   ++S    DL  ++ 
Sbjct: 333 LEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSM 392

Query: 590 VLAHLVRCQDEQNERHLMAILSATKHKAH-----AFLCGLFTGPEQRKQPVLSFVREFFH 644
           V+  L +  D      +  ++S  + K +     A + GL  G E  K      VR F  
Sbjct: 393 VIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKA-----VRVFEL 447

Query: 645 GIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHI 698
            ++     G A Y  N +L+ L  +G+I  A  + +     + FP    +   I
Sbjct: 448 MVE-SFRPGVATY--NSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALI 498



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 157/328 (47%), Gaps = 7/328 (2%)

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N  + L +  G   +A +++    +  C  +  TY  +I  L K+G+LD A +L  EM++
Sbjct: 2   NCALNLLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R   P   +   ++  + KAGR   ++  +  + G    P    +  L+++  K+G+++ 
Sbjct: 59  RGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 394 ALRLWDEMRIAG-FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
           A ++++ M  +    PN   +T +I    K GKLD A+ +   M   G  P   TYS L+
Sbjct: 119 AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLV 178

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL-LEMKTMGY 511
           E    +G+ D    L   MT  G +P +  Y  LL  L K + +D A +++ L +++  Y
Sbjct: 179 EGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCY 238

Query: 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
              V+ + ++ ++ +   VD A R ++ M   G   +      +     ++A  + A+ L
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQAL 298

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQD 599
           L+  V +    D++ Y++++  L  C+D
Sbjct: 299 LKQMVAARCVPDVITYSTIIDGL--CKD 324



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 153/365 (41%), Gaps = 47/365 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L + L ++   D   +L  EM     +  + +   YN ++  L K+ +L+ +    +
Sbjct: 174 YSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIM---YNTLLNGLCKSRRLDEALELVQ 230

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++ S C     +YN LM LF       +AF + + M +  C  D   Y  +I  L +  
Sbjct: 231 LMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDA 290

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV--------YMEMQGCGH 371
           RLD A  L ++M      P    +++++D + K  R+D   K+         M+  GC  
Sbjct: 291 RLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC-- 348

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+A  Y  +IE   +A K   AL L   M  +   P+   F+M+I S  KS  LD A  
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYK 408

Query: 432 IFTDMERAGFLPTP----------------------------------STYSCLLEMHAS 457
           IF  M      P P                                  +TY+ +L+    
Sbjct: 409 IFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCG 468

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G+++ A+++   M      P  ++Y AL+  L +   V+ A ++   ++  G++++V  
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGV 528

Query: 518 SDVLM 522
            +VL+
Sbjct: 529 YNVLV 533



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 165/378 (43%), Gaps = 14/378 (3%)

Query: 143 NRWKWGPELETQLDKLQFVPKMVHITQALKVINDS---DTSLSLFRWAKRQSWYVPGDEC 199
            R   G  L  ++ +  F P ++     L  +  S   D +L L +   R   Y P    
Sbjct: 185 GRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCY-PTVVT 243

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L ++   S+  D    L   M   S +        YN VI  L +  +L+ +    K
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVM---SERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNK---GLPYK---AFEIYESMEKGECSLDGSTYELMIP 313
           +++ + C  D  +Y+ ++            +K   A EI E M++  C  +  TY ++I 
Sbjct: 301 QMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIE 360

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L ++ +   A+ L + M +    P  + F+ ++ S+ K+  LD + K++  M     +P
Sbjct: 361 GLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKP 420

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y +LI+  +K G++D A+R++ E+ +  FRP    +  +++     G+++ A+ + 
Sbjct: 421 NPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMV 479

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M      P  ++Y  L+        V+ A +L+ ++ + G    +  Y  L+  L K+
Sbjct: 480 EGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKK 539

Query: 494 KLVDVAAKILLEMKTMGY 511
           K +  A  +  ++   GY
Sbjct: 540 KRLSDAHGVANKLIEAGY 557



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 5/262 (1%)

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           +AG+   +++++ E +     P+   Y SLI    KAGKLD A  L DEMR  G  P   
Sbjct: 10  RAGQHGQAVQLFREER---CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVA 66

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           +   +I    K+G+   A+  F  +      P   T++ L++    SG+V+ A +++ SM
Sbjct: 67  VHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESM 126

Query: 472 -TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGS 529
            TS+   P + TYT ++  L K   +D A ++L  M   G   +V    VL+  + K G 
Sbjct: 127 HTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGR 186

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
            D     L+ M   G + +  +   L     K+   + A  L++  + S     +V Y S
Sbjct: 187 TDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNS 246

Query: 590 VLAHLVRCQDEQNERHLMAILS 611
           ++    R +       L+ ++S
Sbjct: 247 LMELFCRSKQVDRAFRLIQVMS 268



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 7/207 (3%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           + + L     S  +L+L R     S  VP    + M+   L +S D D    +F  M   
Sbjct: 358 VIEGLCRARKSQQALALLRRMI-DSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSER 416

Query: 227 SSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
             K N +    AY  +I  L+K  +++ +   F+ +++S  +    +YN ++      G 
Sbjct: 417 ECKPNPV----AYAALIDGLSKGGEVDKAVRVFELMVESF-RPGVATYNSVLDGLCGVGR 471

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +A  + E M   EC  DG++Y  +I  L +   ++ A +LFQ ++ + F     ++  
Sbjct: 472 IEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNV 531

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHR 372
           LV+ + K  RL  +  V  ++   G++
Sbjct: 532 LVNELCKKKRLSDAHGVANKLIEAGYK 558



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 98/220 (44%), Gaps = 6/220 (2%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           +Q+   P    Y ++ + L  +R     L+L   M+       +S FS    VI  L K+
Sbjct: 344 KQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSM---VIGSLCKS 400

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG-ST 307
             L+ +Y  F  + + +CK +  +Y  L+      G   KA  ++E M   E    G +T
Sbjct: 401 HDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV--ESFRPGVAT 458

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  ++  L   GR++ A+++ + M  +   P    + +L+  + +   ++ + +++  ++
Sbjct: 459 YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVE 518

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
             G      +Y  L+    K  +L  A  + +++  AG++
Sbjct: 519 AKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 127/578 (21%), Positives = 252/578 (43%), Gaps = 37/578 (6%)

Query: 237 AYNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           +YN VI    K    L  +   F+++L      D +++N L+      G    A  +++ 
Sbjct: 18  SYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAACSRVGHLEDARAVFDE 77

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M       D  TY   I ++ K G ++ A+++  +M+ +  +P+   +++L+D   K  +
Sbjct: 78  MIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEK 137

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            + ++K+  +M+    +     Y +L+  Y KAGK      + DEM   G   +   +  
Sbjct: 138 YEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNS 197

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I  + K G+LDI   +  DM + G  P+  TYS L+++++ +G    A  +Y     +G
Sbjct: 198 LINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESG 257

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-------VYIKDG 528
           L+P +  +++ +  LAK  L++ A  +L +M  MG   +V   + ++       V ++D 
Sbjct: 258 LKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDD 317

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK-----PLLETYVESAAKVD 583
           S    +  +   G   +R  N + R    S     +  S +      L +  V+   + +
Sbjct: 318 SEVGDMGIVGVYGGQIVRVANPVSRG-GRSATDVRMRRSQELFFILELFQKMVQQGVRPN 376

Query: 584 LVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFF 643
           +V ++++L    RC   ++   L+  L    +  +    GL  G  +    V S  +  F
Sbjct: 377 VVTFSAILNACSRCNSFEDAALLLEQLRLFDNFVYGVAYGLLVGSRE----VWSQAQSLF 432

Query: 644 HGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLD 703
           + +   ++   +  F N L + L   GQ  +A+   +V +E     + +  +    + LD
Sbjct: 433 NQLG-RMDSPTSSAFYNALTDVLWHFGQRRKAQ---QVVFEG--INRRVWENTWGEFCLD 486

Query: 704 VRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQML 753
           +  +S GAA   V   L   R  +     +P  + ++TG           TL+ VI  +L
Sbjct: 487 LHLMSCGAAQAMVHAWLLNVRSIVFEGRAMPEFLSILTGWGKHSRIAGASTLRRVIEALL 546

Query: 754 SSVESPFEVSKVVLR---APGDSVMEWFKKPIVQQFLL 788
           +S+ +PF+V +  +    +P   V  W ++      LL
Sbjct: 547 NSIGAPFQVERFNIGRFVSPSAVVAAWLRESGTFNILL 584



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 128/274 (46%), Gaps = 2/274 (0%)

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAG-RLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           + + + MK    RP+   + +++D+ GK G  L  ++  + +M   G  P    + SL+ 
Sbjct: 1   MGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLA 60

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           + ++ G L+ A  ++DEM   G   +   +   I++  K G +++AM +  DME  G  P
Sbjct: 61  ACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKP 120

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              TYS L++ ++   + + A+KL   M S  ++     Y  LL +  K       A + 
Sbjct: 121 NVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVC 180

Query: 504 LEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            EM+ +G   D V+ + ++  Y K G +D     ++ M   G+  +      L +   K 
Sbjct: 181 DEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKA 240

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            ++  A  +   + ES  K D+VL++S +  L +
Sbjct: 241 GMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAK 274


>gi|255570073|ref|XP_002525999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534731|gb|EEF36423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 557

 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 161/361 (44%), Gaps = 7/361 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    K  ++E +    K++ +++C++D  S+N L   F  + +  + F IY  +
Sbjct: 9   TYNSLIDGYCKYGQVEEACLTIKRIRNAECRVDLVSFNALFNGFCKRKMKEEVF-IYMGL 67

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  TY   I +L K G LD   K F+EM++    P+   F  L+D   K G L
Sbjct: 68  MWKCCLPNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDGYSKIGNL 127

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++Y +M    H P+   Y +LI  + K G L+ A   + +M   G  PN  ++T I
Sbjct: 128 DFAYQLYKDMCKSMHLPNVYTYAALINGFCKRGMLERAEWFFLKMLEVGIMPNSTVYTSI 187

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ H K G +D+AM  F++M +  F      Y  ++    ++G++D  +++   M   GL
Sbjct: 188 IDGHFKKGNIDVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRNGL 247

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P     T L+    K      A  +  E+   G+  D V+ S ++    KDG    A  
Sbjct: 248 APDKVVLTTLMHAHFKAGNTKAAYGVYRELLNRGFEPDAVTISSLIDGLCKDGRYHDAKG 307

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           +         + N      L +   K    +  + ++    ES    D  +YTS +A L 
Sbjct: 308 YF-----CKEKANEVSYTALIDGICKEGNLDEVERVVMEMSESGFVPDKFVYTSWIAELC 362

Query: 596 R 596
           R
Sbjct: 363 R 363



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 147/349 (42%), Gaps = 9/349 (2%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           + D DT    F+   R+   VP    +  L D  ++  + D    L+ +M        + 
Sbjct: 89  VGDLDTGYKFFK-EMRKDGIVPNLIAFTCLIDGYSKIGNLDFAYQLYKDMCKSMHLPNVY 147

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
            ++A   +I    K   LE +   F K+L+     ++  Y  ++     KG    A + +
Sbjct: 148 TYAA---LINGFCKRGMLERAEWFFLKMLEVGIMPNSTVYTSIIDGHFKKGNIDVAMKYF 204

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
             M K    LD   Y ++I  L  +GRLD  +++ ++M      P   +  +L+ +  KA
Sbjct: 205 SEMRKESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRNGLAPDKVVLTTLMHAHFKA 264

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G    +  VY E+   G  P A    SLI+   K G+   A     +      + N   +
Sbjct: 265 GNTKAAYGVYRELLNRGFEPDAVTISSLIDGLCKDGRYHDA-----KGYFCKEKANEVSY 319

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
           T +I+   K G LD    +  +M  +GF+P    Y+  +      G++  A K+ N M  
Sbjct: 320 TALIDGICKEGNLDEVERVVMEMSESGFVPDKFVYTSWIAELCRQGKIVEAFKVKNKMVE 379

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            G+   L TY++L+  LA + L+  A ++  +M   G   D    D+L+
Sbjct: 380 EGIDLDLLTYSSLIFGLANKGLMIEAKQLFDDMLKRGIIPDSMVFDILI 428



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 36/261 (13%)

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR---------------------- 407
           G  P    Y SLI+ Y K G+++ A      +R A  R                      
Sbjct: 2   GSLPDIVTYNSLIDGYCKYGQVEEACLTIKRIRNAECRVDLVSFNALFNGFCKRKMKEEV 61

Query: 408 ------------PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
                       PN   +   I++  K G LD     F +M + G +P    ++CL++ +
Sbjct: 62  FIYMGLMWKCCLPNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDGY 121

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           +  G +D A +LY  M  +   P + TY AL+    KR +++ A    L+M  +G   + 
Sbjct: 122 SKIGNLDFAYQLYKDMCKSMHLPNVYTYAALINGFCKRGMLERAEWFFLKMLEVGIMPNS 181

Query: 516 SA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
           +  + ++  + K G++D A+++   M     R +      +    + N   +    ++E 
Sbjct: 182 TVYTSIIDGHFKKGNIDVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGRLDKVLEVMED 241

Query: 575 YVESAAKVDLVLYTSVL-AHL 594
            V +    D V+ T+++ AH 
Sbjct: 242 MVRNGLAPDKVVLTTLMHAHF 262



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 116/266 (43%), Gaps = 11/266 (4%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++  F   +++S+ +      V++  ++N  R  D +L + ++MV    +NG++    
Sbjct: 198 DVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGR-LDKVLEVMEDMV----RNGLAPDKV 252

Query: 238 YNRVIQYLA-KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
               + +   KA   + +Y  ++++L+   + D  + + L+      G  + A   +   
Sbjct: 253 VLTTLMHAHFKAGNTKAAYGVYRELLNRGFEPDAVTISSLIDGLCKDGRYHDAKGYFCKE 312

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +  E S     Y  +I  + K G LD   ++  EM E  F P   ++ S +  + + G++
Sbjct: 313 KANEVS-----YTALIDGICKEGNLDEVERVVMEMSESGFVPDKFVYTSWIAELCRQGKI 367

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + KV  +M   G       Y SLI   A  G +  A +L+D+M   G  P+  +F ++
Sbjct: 368 VEAFKVKNKMVEEGIDLDLLTYSSLIFGLANKGLMIEAKQLFDDMLKRGIIPDSMVFDIL 427

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFL 442
           I  + K         +  +M R G L
Sbjct: 428 IRGYLKQDNPVAISHLHEEMRRRGLL 453


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 188/392 (47%), Gaps = 13/392 (3%)

Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLA-KADKLEMSYCCFKKVLD 263
           +LNE+R F      FD++++     G++L + + N  +  L+ K D L M    F +   
Sbjct: 54  LLNEARKF------FDKLLN----YGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSEFPQ 103

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
                +T+SYN+LM      G   +A  +   ME   C  D  +Y  +I      G L  
Sbjct: 104 LGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQK 163

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
            ++L +EM+ +  +P+   ++S++  + K+G++    KV  EM   G  P   +Y +LI+
Sbjct: 164 VVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLID 223

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            + K G    A +L+ EM      P+   F+ +I   + SGK+  A  +F +M + GF P
Sbjct: 224 GFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEP 283

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              TY+ L++ +   G++  A  L+N M   GL P + TYTAL   L K   +D A ++L
Sbjct: 284 DEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELL 343

Query: 504 LEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            EM   G  +++S  + ++  + K G++  A++ +  M  +G+  +      L ++  K 
Sbjct: 344 HEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKT 403

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                A+ LL   ++   +  +V +  ++  L
Sbjct: 404 GEMVKARELLREMLDRGLQPTVVTFNVLMNGL 435



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 134/286 (46%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K+ K+       ++++      D   Y  L+  F   G    A++++  M
Sbjct: 182 TYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEM 241

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E  E   D   +  +I  L+ SG++  A KLF EM ++ F P    + +L+D   K G +
Sbjct: 242 EAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEM 301

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++ +M   G  P+   Y +L +   K+G+LDTA  L  EM   G + N   +  I
Sbjct: 302 KKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTI 361

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K+G +  A+ +  +M+ AG  P   TY+ L++ +  +G++  A +L   M   GL
Sbjct: 362 VNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGL 421

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           +P + T+  L+  L     ++   ++L  M   G   + +  + +M
Sbjct: 422 QPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIM 467



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 135/285 (47%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I    K    + +Y  F ++   +   D+ +++ L+      G   +A +++  M 
Sbjct: 218 YTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMI 277

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K     D  TY  +I    K G +  A  L  +M +    P+   + +L D + K+G LD
Sbjct: 278 KKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELD 337

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           T+ ++  EM   G + +   Y +++    KAG +  A++L +EM+ AG  P+   +T ++
Sbjct: 338 TANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLM 397

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +++ K+G++  A  +  +M   G  PT  T++ L+     SG+++   +L   M   G+ 
Sbjct: 398 DAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIM 457

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           P  +TY +++     R  + ++ +I   M   G   D +  ++L+
Sbjct: 458 PNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILI 502



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 152/328 (46%), Gaps = 3/328 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L D   +  +      LF EM    ++  +    A++ +I  L+ + K+  +
Sbjct: 213 PDHVIYTTLIDGFCKLGNTQAAYKLFSEM---EAREIVPDSIAFSALICGLSGSGKVVEA 269

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F +++    + D  +Y  L+  +   G   KAF ++  M +   + +  TY  +   
Sbjct: 270 DKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADG 329

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L KSG LD A +L  EM  +  + + + + ++V+ + KAG +  ++K+  EM+  G  P 
Sbjct: 330 LCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPD 389

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +L+++Y K G++  A  L  EM   G +P    F +++     SGKL+    +  
Sbjct: 390 TITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLK 449

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G +P  +TY+ +++ +     +  + ++Y  M + G+ P  +TY  L+    K +
Sbjct: 450 WMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKAR 509

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLM 522
            +  A  +  EM    +++  S+ + L+
Sbjct: 510 NMKEAWFLHKEMVEKRFNLTASSYNALI 537



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 3/292 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           LF+EM+    +     ++A   +I    K  +++ ++    +++      +  +Y  L  
Sbjct: 272 LFNEMIKKGFEPDEVTYTA---LIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALAD 328

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
                G    A E+   M +    L+ STY  ++  L K+G +  A+KL +EMKE    P
Sbjct: 329 GLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHP 388

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               + +L+D+  K G +  + ++  EM   G +P+   +  L+     +GKL+   RL 
Sbjct: 389 DTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLL 448

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M   G  PN   +  I++ +     + I+  I+  M   G +P  +TY+ L++ H  +
Sbjct: 449 KWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKA 508

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             +  A  L+  M         S+Y AL+    KRK +  A ++  EM+  G
Sbjct: 509 RNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREG 560



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/394 (20%), Positives = 170/394 (43%), Gaps = 19/394 (4%)

Query: 96  LDESGSVIYTGKGIRSV--EPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELET 153
           L +SG V+   K +R +     F DHV+   +   F       K+      +K   E+E 
Sbjct: 190 LCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGF------CKLGNTQAAYKLFSEMEA 243

Query: 154 QL---DKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNES 210
           +    D + F   +  ++ + KV+ ++D    LF    ++  + P +  Y  L D   + 
Sbjct: 244 REIVPDSIAFSALICGLSGSGKVV-EAD---KLFNEMIKKG-FEPDEVTYTALIDGYCKL 298

Query: 211 RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
            +      L ++MV       +  ++A   +   L K+ +L+ +     ++     +++ 
Sbjct: 299 GEMKKAFFLHNQMVQIGLTPNVVTYTA---LADGLCKSGELDTANELLHEMCRKGLQLNI 355

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            +YN ++      G   +A ++ E M++     D  TY  ++ +  K+G +  A +L +E
Sbjct: 356 STYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLRE 415

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M +R  +P+   F  L++ +  +G+L+   ++   M   G  P+A  Y S+++ Y     
Sbjct: 416 MLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNN 475

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +  +  ++  M   G  P+   + ++I+ H K+  +  A  +  +M    F  T S+Y+ 
Sbjct: 476 MRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNA 535

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           L++      ++  A +L+  M   GL      Y 
Sbjct: 536 LIKGFFKRKKLLEARQLFEEMRREGLVASAEIYN 569



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 3/206 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L D   ++ +      L  EM+    +  +  F   N ++  L  + KLE  
Sbjct: 388 PDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTF---NVLMNGLCMSGKLEDG 444

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               K +L+     +  +YN +M  +  +     + EIY  M       D +TY ++I  
Sbjct: 445 ERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKG 504

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K+  +  A  L +EM E+ F  + + + +L+    K  +L  + +++ EM+  G   S
Sbjct: 505 HCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVAS 564

Query: 375 APMYVSLIESYAKAGKLDTALRLWDE 400
           A +Y   ++   + G ++T L L DE
Sbjct: 565 AEIYNLFVDMNYEEGNMETTLELCDE 590


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 2/334 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R +   P    Y  L      + + DG   +   M  +   N       +N ++  L KA
Sbjct: 37  RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG--NAKPNLVTFNSMVNGLCKA 94

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            ++E +   F +++      D  SYN L++ +   G  +++  ++  M +     D  T+
Sbjct: 95  GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTF 154

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I +  K+G L+ A+ L  +M+ER  R +   F +L+D   K G LD ++    EM+ 
Sbjct: 155 TSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 214

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           CG +PS   Y +LI  Y K G++D A  L  EM     +P+   ++ II  + K G LD 
Sbjct: 215 CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDS 274

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +   M + G LP   TYS L+       +++ A +L+ +M   G++P   TYT L+ 
Sbjct: 275 AFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 334

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
              K   V+ A  +  EM   G   DV    VL+
Sbjct: 335 GHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLI 368



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 159/337 (47%), Gaps = 4/337 (1%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN+L+     +G   +A  +   M    C+ +  TY  ++ +  ++G LD A ++   M
Sbjct: 12  TYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLM 71

Query: 332 KER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           +E  N +P+   F S+V+ + KAGR++ + KV+ EM   G  P    Y +L+  Y K G 
Sbjct: 72  REEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGC 131

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           L  +L ++ EM   G  P+   FT +I +  K+G L+ A+++   M   G      T++ 
Sbjct: 132 LHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 191

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L++     G +D A+     M   G++P +  Y AL+    K   +D+A +++ EM+   
Sbjct: 192 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 251

Query: 511 YSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
              D V+ S ++  Y K G++D A +  + M   G+  +      L     +      A 
Sbjct: 252 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDAC 311

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            L E  ++   + D   YT+++     C++   E+ L
Sbjct: 312 ELFENMLQLGVQPDEFTYTTLIDG--HCKEGNVEKAL 346



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 164/361 (45%), Gaps = 2/361 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM- 296
           YN +++ L    +LE +      +  + C  +  +YN L+  F   G    A  +   M 
Sbjct: 13  YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMR 72

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+G    +  T+  M+  L K+GR++ A K+F EM      P    + +L+    K G L
Sbjct: 73  EEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCL 132

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             S+ V+ EM   G  P    + SLI +  KAG L+ A+ L  +MR  G R N   FT +
Sbjct: 133 HESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTAL 192

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K G LD A+    +M + G  P+   Y+ L+  +   G++D A +L   M +  +
Sbjct: 193 IDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRV 252

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +P + TY+ +++   K   +D A ++  +M   G   D ++ S ++    ++  ++ A  
Sbjct: 253 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 312

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M   G++ + F    L +   K    E A  L +  +      D+V Y+ ++  L 
Sbjct: 313 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLS 372

Query: 596 R 596
           +
Sbjct: 373 K 373



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 164/341 (48%), Gaps = 10/341 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVL-----DSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           YN ++    +A +L+ +    ++V+     + + K +  ++N ++      G    A ++
Sbjct: 48  YNTLVAAFCRAGELDGA----ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKV 103

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           ++ M +   + D  +Y  ++    K G L  ++ +F EM +R   P    F SL+ +  K
Sbjct: 104 FDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCK 163

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
           AG L+ ++ +  +M+  G R +   + +LI+ + K G LD AL   +EMR  G +P+   
Sbjct: 164 AGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVC 223

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  +I  + K G++D+A  +  +ME     P   TYS ++  +   G +DSA +L   M 
Sbjct: 224 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKML 283

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVD 531
             G+ P   TY++L+  L + K ++ A ++   M  +G   D  + + ++  + K+G+V+
Sbjct: 284 KKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVE 343

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
            AL     M   G+  +      L     K+A  + A  LL
Sbjct: 344 KALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL 384



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 133/264 (50%), Gaps = 2/264 (0%)

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M      P+   +  LV ++   GRL+ ++ V  +M+G G  P+A  Y +L+ ++ +AG+
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 391 LDTALRLWDEMRIAG-FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           LD A R+   MR  G  +PN   F  ++    K+G+++ A  +F +M R G  P   +Y+
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            LL  +   G +  ++ +++ MT  GL P + T+T+L+    K   ++ A  ++ +M+  
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 510 GYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G  + +V+ + ++  + K G +D AL  +  M   GI+ +      L     K    + A
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 569 KPLLETYVESAAKVDLVLYTSVLA 592
           + L+        K D+V Y+++++
Sbjct: 241 RELIREMEAKRVKPDVVTYSTIIS 264



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 18/232 (7%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y  L D   +  + +  LSL DEM+    K  +     Y+ +I  L+K+ + + +
Sbjct: 324 PDEFTYTTLIDGHCKEGNVEKALSLHDEMIR---KGVLPDVVTYSVLINGLSKSARTKEA 380

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTL---------------FLNKGLPYKAFEIYESMEKG 299
           +    K+   D   D   Y+ LM                 F  KGL  +A ++Y+SM   
Sbjct: 381 HRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDR 440

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
              LDGS Y ++I    + G +  A+   ++M    F P+     SLV  + + G +  +
Sbjct: 441 NWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 500

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
                ++  C     A    +LI+   K G +D  + +   M   G  P+ G
Sbjct: 501 DNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPSSG 552



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 15/256 (5%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I+ L +  +L  +   F+ +L    + D  +Y  L+     +G   KA  +++ M 
Sbjct: 294 YSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 353

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS---------------FNI 342
           +     D  TY ++I  L+KS R   A +L  ++   +  P                F  
Sbjct: 354 RKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKS 413

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
             +L+      G +  + KVY  M     +    +Y  LI  + + G +  AL    +M 
Sbjct: 414 VVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQML 473

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
            +GF PN      ++    + G +  A +   D+     L        L++++   G VD
Sbjct: 474 RSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVD 533

Query: 463 SAMKLYNSMTSAGLRP 478
           + + +   M   GL P
Sbjct: 534 ALIDVLCGMARDGLLP 549


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 178/381 (46%), Gaps = 8/381 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VH 225
           + +AL++    + +L+L RWA  +           M+   L      D + +L DEM + 
Sbjct: 109 LLKALELSGHWEWALALLRWAGAEG--AADASALEMVVRALGREGQHDAVCALLDEMPLP 166

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
             S+  +    AY  V+  L++A + E +   F ++          +YNV++ ++   G 
Sbjct: 167 PGSRLDVR---AYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGR 223

Query: 286 PY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
            + +   + + M       D  T   +I +  + G +D A+  F+++K R   P    + 
Sbjct: 224 SWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYN 283

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +L+   GKAG    +++V  EM+  G +P A  Y  L  +YA+AG  + A +  D M   
Sbjct: 284 ALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSK 343

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  PN   +  ++ ++   GK+D A+++F  M+++G +P  +TY+ +L M     +    
Sbjct: 344 GLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVM 403

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
           +++   M+ +G  P   T+  +L +  KR + D   ++L  MK+ G  +     + L+  
Sbjct: 404 LEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAA 463

Query: 524 YIKDGSVDHALRWLRFMGSSG 544
           Y + GS  +A +    M S+G
Sbjct: 464 YGRCGSRTNAFKMYNEMTSAG 484



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/422 (20%), Positives = 176/422 (41%), Gaps = 41/422 (9%)

Query: 214 DGMLSLFDEMVHDSSKNG-ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           D  L+LFD+M     K+G +   + YN ++  L K  +  +      ++  S C  +  +
Sbjct: 366 DEALALFDQM----KKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVT 421

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +N ++ +   +G+      + E M+     L   TY  +I +  + G    A K++ EM 
Sbjct: 422 WNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMT 481

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL- 391
              F P    + +L++ + + G   T+  +  +M+  G +P+   Y  L++ YAK G + 
Sbjct: 482 SAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIA 541

Query: 392 -----------DTALRLW-----------------------DEMRIAGFRPNFGLFTMII 417
                       T    W                        E++  G+ P+  +F  ++
Sbjct: 542 GIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSML 601

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             +AK+G       IF  ++++G  P   TY+ L++M+A   +   A K+ N + S+ ++
Sbjct: 602 SMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVK 661

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P + +Y  ++    K+ L+  A +IL EM   G +  V     L+  Y        A   
Sbjct: 662 PDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREV 721

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           + +M    ++      R++ +S  K   +E A+  L    E+    D  +  ++ A++  
Sbjct: 722 INYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEVSETDPNFDKKVLHTLAAYIED 781

Query: 597 CQ 598
            Q
Sbjct: 782 AQ 783



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 104/214 (48%), Gaps = 3/214 (1%)

Query: 381 LIESYAKAGKLDTALRLWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           ++ +  + G+ D    L DEM +  G R +   +T ++ + +++G+ + A+ +F ++ R 
Sbjct: 143 VVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQ 202

Query: 440 GFLPTPSTYSCLLEMHASSGQV-DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
           G  PT  TY+ +L+++   G+     + L + M +AG+ P   T + ++    +  LVD 
Sbjct: 203 GVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDE 262

Query: 499 AAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A     ++K  G++   V+ + +L V+ K G+   ALR L+ M   G + +     +L  
Sbjct: 263 AVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAG 322

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +  +   YE A   L+T        +   Y +V+
Sbjct: 323 TYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVM 356


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 206/482 (42%), Gaps = 21/482 (4%)

Query: 114 PGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKV 173
           PGF       G+     N      ++E   +  W      +++K + +PK+    + L  
Sbjct: 179 PGF-------GVFDTLFNVLVDLGMLEEARQCFW------KMNKFRVLPKVRSCNELLHR 225

Query: 174 INDSDT---SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN 230
           ++ S     +LS F+     +   P    Y M+   L    D +   SLF+EM     + 
Sbjct: 226 LSKSSKGGLALSFFK-DMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRP 284

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
            I     YN +I    K   L  +   F+++ D+ C+ D  +YN L+  F       +AF
Sbjct: 285 DIV---TYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAF 341

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           E    M++     +  TY  +I +  K+G L  A K F +M     +P+   + SL+D+ 
Sbjct: 342 EYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDAN 401

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K G L+ + K+  EMQ  G   +   Y +L++   + G++  A  L+  +  AG+  N 
Sbjct: 402 CKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQ 461

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
            ++T +   + K+  ++ AM I  +M +    P    Y   +       +++ +M +   
Sbjct: 462 QIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIRE 521

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGS 529
           M   GL      YT L+    K      A  +L EM+ +G  + V    VL+  + K G 
Sbjct: 522 MMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGL 581

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           V  A+R+   M  +G++ N  I   L +   KN   E AK L    ++     D ++YTS
Sbjct: 582 VQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTS 641

Query: 590 VL 591
           ++
Sbjct: 642 LI 643



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 182/387 (47%), Gaps = 6/387 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LS F +MV   +    S+F+ YN VI  LA+   LE +   F+++     + D  +YN L
Sbjct: 236 LSFFKDMV--VAGLSPSVFT-YNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSL 292

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  +   G+   A  ++E M+   C  D  TY  +I    K  R+  A +    MK+R  
Sbjct: 293 IDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGL 352

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P+   +++L+D+  KAG L  + K +++M   G +P+   Y SLI++  K G L+ A +
Sbjct: 353 QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFK 412

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  EM+ AG   N   +T +++   + G++  A  +F  + +AG+      Y+ L   + 
Sbjct: 413 LESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYI 472

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            +  ++ AM +   M    L+P L  Y   +  L ++  ++ +  ++ EM   G + +  
Sbjct: 473 KAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSY 532

Query: 517 ASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
               L+  Y K G    A+  L+ M   GI+        L +   K  L + A    +  
Sbjct: 533 IYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHM 592

Query: 576 VESAAKVDLVLYTSVLAHLVR--CQDE 600
             +  + ++++YT+++  L +  C +E
Sbjct: 593 TRNGLQPNIMIYTALIDGLCKNDCLEE 619



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 187/460 (40%), Gaps = 64/460 (13%)

Query: 165 VHITQAL-KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSL---- 219
           + +++AL K+  D  ++L  F+ A  ++ +    E Y +L  +L     F GM  L    
Sbjct: 95  IWVSKALVKLKGDPKSALKFFKEAGARAGFRHAAESYCVLAHIL-----FCGMFYLDARS 149

Query: 220 ----------------FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263
                           F +M+  +       F  ++ +   L     LE +  CF K+  
Sbjct: 150 VIKEWILLGREFPGCDFFDMLWSTRNVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNK 209

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
                  +S N L+           A   ++ M     S    TY ++I  LA+ G L+A
Sbjct: 210 FRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEA 269

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A  LF+EMK +  RP    + SL+D  GK G L  ++ V+ EM+  G  P    Y SLI 
Sbjct: 270 ARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLIN 329

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            + K  ++  A      M+  G +PN   ++ +I++  K+G L  A   F DM R G  P
Sbjct: 330 CFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQP 389

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              TY+ L++ +   G ++ A KL + M  AG+   + TYTALL  L +           
Sbjct: 390 NEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCE----------- 438

Query: 504 LEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
                                  DG +  A      +  +G   N  I   LF   +K  
Sbjct: 439 -----------------------DGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAK 475

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
           + E A  +LE   +   K DL+LY + +  L R    QNE
Sbjct: 476 MMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCR----QNE 511



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 156/353 (44%), Gaps = 6/353 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEM 253
           P +  Y  L D   +  D +    L  EM     + G++L    Y  ++  L +  ++  
Sbjct: 389 PNEFTYTSLIDANCKIGDLNEAFKLESEM----QQAGVNLNIVTYTALLDGLCEDGRMRE 444

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F  +L +   ++ Q Y  L   ++   +  KA +I E M K     D   Y   I 
Sbjct: 445 AEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIW 504

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L +   ++ ++ + +EM +     +  I+ +L+D+  K G+   ++ +  EMQ  G + 
Sbjct: 505 GLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKI 564

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y  LI+   K G +  A+R +D M   G +PN  ++T +I+   K+  L+ A ++F
Sbjct: 565 TVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLF 624

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +M   G  P    Y+ L++ +   G    A+ L N M   G+   L  YT+L+   ++ 
Sbjct: 625 NEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRY 684

Query: 494 KLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
             V +A  +L EM   G   D V    +L  Y + G ++ AL     M   G+
Sbjct: 685 GQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGL 737



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 141/318 (44%), Gaps = 4/318 (1%)

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
           LF    +  W +   + Y  LF    +++  +  + + +EM   + K  + L   Y   I
Sbjct: 448 LFGALLKAGWTL-NQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLL---YGTKI 503

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
             L + +++E S    ++++D     ++  Y  L+  +   G   +A  + + M+     
Sbjct: 504 WGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIK 563

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           +   TY ++I  L K G +  A++ F  M     +P+  I+ +L+D + K   L+ +  +
Sbjct: 564 ITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNL 623

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           + EM   G  P   +Y SLI+   K G    AL L + M   G   +   +T +I   ++
Sbjct: 624 FNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSR 683

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            G++ +A S+  +M R G +P      CLL  +   G ++ A+ L++ M   GL  G   
Sbjct: 684 YGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGLISGTID 743

Query: 483 YTALLTLLAKRKLVDVAA 500
            T    L A  KL  + A
Sbjct: 744 ITVPSCLTAVTKLHKLCA 761



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 141/316 (44%), Gaps = 10/316 (3%)

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           C      ++ +   L   G L+ A + F +M +    P       L+  + K+ +   ++
Sbjct: 177 CRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLAL 236

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             + +M   G  PS   Y  +I   A+ G L+ A  L++EM+  G RP+   +  +I+ +
Sbjct: 237 SFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGY 296

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K G L  A+S+F +M+ AG  P   TY+ L+       ++  A +  + M   GL+P +
Sbjct: 297 GKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNV 356

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRF 539
            TY+ L+    K  ++  A K  ++M  +G    + + + ++    K G ++ A +    
Sbjct: 357 VTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESE 416

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ- 598
           M  +G+  N      L +   ++     A+ L    +++   ++  +YTS+    ++ + 
Sbjct: 417 MQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKM 476

Query: 599 --------DEQNERHL 606
                   +E N+++L
Sbjct: 477 MEKAMDILEEMNKKNL 492


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 186/435 (42%), Gaps = 19/435 (4%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-------- 227
           D   +L  F+WA  Q  +    E Y ++  ++  +R +        E++ +S        
Sbjct: 83  DPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPV 142

Query: 228 ---------SKN-GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
                    ++N  +S    ++ +     +   LE +  CF ++ +       +S N L+
Sbjct: 143 CNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLL 202

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                 G      + +  M     +    TY +MI  L K G L+ + +LF +M+E    
Sbjct: 203 HRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLS 262

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P    + SL+D  GK G L+    ++ EM+  G  P    Y  LI  Y K  K+  A   
Sbjct: 263 PDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY 322

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           + EM+  G +PN   ++ +I++  K G +  A+ +  DM R G LP   TY+ L++ +  
Sbjct: 323 FSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCK 382

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           +G +  A KL N M  AG++  + TYTALL  L K   +  A ++   M   G S +   
Sbjct: 383 AGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQV 442

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
              L+  YIK   ++ A++ L+ M    I+ +  +   +          E  K +LE   
Sbjct: 443 YTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMK 502

Query: 577 ESAAKVDLVLYTSVL 591
                 + V+ T+++
Sbjct: 503 SRGISANPVISTTII 517



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 174/363 (47%), Gaps = 2/363 (0%)

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           S+F+ YN +I YL K   LE S   F ++ +     D  +YN L+  +   G   +   +
Sbjct: 229 SVFT-YNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 287

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  M+   C  D  TY  +I    K  ++  A + F EMK    +P+   +++L+D+  K
Sbjct: 288 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 347

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G +  ++K+  +M+  G  P+   Y SLI++  KAG L  A +L ++M  AG + N   
Sbjct: 348 EGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVT 407

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +T +++   K+G++  A  +F  M + G  P    Y+ L+  +  + +++ AMK+   MT
Sbjct: 408 YTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMT 467

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVD 531
              ++P L  Y +++     ++ ++    IL EMK+ G S + V ++ ++  Y K G   
Sbjct: 468 ECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSS 527

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            AL + + M   G+         L +   +  + E A       +    + ++ +YTS++
Sbjct: 528 DALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLI 587

Query: 592 AHL 594
             L
Sbjct: 588 DGL 590



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 193/451 (42%), Gaps = 72/451 (15%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+    P    Y  L D   +    + + SLF+EM        +     YN +I    K 
Sbjct: 257 REMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM---KDVGCVPDIITYNGLINCYCKF 313

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI---------------Y 293
           +K+  ++  F ++ ++  K +  +Y+ L+  F  +G+   A ++               Y
Sbjct: 314 EKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTY 373

Query: 294 ESMEKGECS--------------------LDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
            S+    C                     L+  TY  ++  L K+GR+  A ++F+ M +
Sbjct: 374 TSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK 433

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P+  ++ +LV    KA R++ +MK+  +M  C  +P   +Y S+I  +    KL+ 
Sbjct: 434 DGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEE 493

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
              + +EM+  G   N  + T II+++ K+GK   A++ F +M+  G   T  TY  L++
Sbjct: 494 TKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLID 553

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
               +G V+ A+  +  M S GL+P ++ YT+L+  L     ++ A K+  EM+  G + 
Sbjct: 554 GLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTP 613

Query: 514 DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           D++A   L+    DG++ H                N                + A  L+ 
Sbjct: 614 DITAFTALI----DGNLKHG---------------NL---------------QEALVLIS 639

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
              E A + DL +YTS+++   +C +    R
Sbjct: 640 RMTELAIEFDLHVYTSLVSGFSQCGELHQAR 670



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 148/322 (45%), Gaps = 6/322 (1%)

Query: 221 DEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           +E+     K+GIS     Y  ++    KA+++E +    K++ + + K D   Y  ++  
Sbjct: 425 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 484

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
             ++    +   I E M+    S +      +I +  K+G+   A+  FQEM++     +
Sbjct: 485 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEAT 544

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              +  L+D + +AG ++ ++  +  M   G +P+  +Y SLI+       +++A +L+D
Sbjct: 545 IVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFD 604

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           EM+  G  P+   FT +I+ + K G L  A+ + + M           Y+ L+   +  G
Sbjct: 605 EMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCG 664

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           ++  A K +N M   G+ P       LL    KR  +D A ++  EM+ M YS +  A  
Sbjct: 665 ELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAYSFEFDAQ- 723

Query: 520 VLMVYIKDGS--VDHALRWLRF 539
             + Y + G     HA  +L+F
Sbjct: 724 --LAYNEQGVNLTLHAYLYLKF 743



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 141/325 (43%), Gaps = 40/325 (12%)

Query: 275 VLMTLFLNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           V+M   ++ G P    F++  S  +  C      ++++     + G L+ A + F  M  
Sbjct: 130 VIMNSRMDMGFPVCNIFDMLWS-TRNICVSGSGVFDVLFSVFVELGLLEEANECFSRM-- 186

Query: 334 RNFR--PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           RNFR  P       L+  + K+G      K + +M G G  PS   Y  +I+   K G L
Sbjct: 187 RNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDL 246

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + + RL+ +MR  G  P+   +  +I+ + K G L+   S+F +M+  G +P   TY+ L
Sbjct: 247 ENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGL 306

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +  +    ++  A + ++ M + GL+P + TY+ L+                        
Sbjct: 307 INCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLID----------------------- 343

Query: 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
                       + K+G +  A++ L  M  +G+  N F    L ++  K      A  L
Sbjct: 344 -----------AFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKL 392

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
           L   +++  K+++V YT++L  L +
Sbjct: 393 LNDMLQAGVKLNIVTYTALLDGLCK 417


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 169/344 (49%), Gaps = 8/344 (2%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS---SKN 230
           +N  D +++    AK  S ++PG   Y  + D +  SR   G + L  E V+     S+ 
Sbjct: 155 LNMIDQAVNTINLAK-SSGFMPGVLSYNSVLDAIVRSR---GSVKLSAEEVYREMIRSRV 210

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
             ++++ YN +I+      +L+    CF ++  + C  +  +YN L+  +   G   +AF
Sbjct: 211 SPNVYT-YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 269

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            + +SM       +  +Y ++I  L + G +  A ++ +EM  + F P    + +L++  
Sbjct: 270 GLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGY 329

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K G    ++ ++ EM   G  PS   Y +LI S  KA  L+ A+  +D+MRI G RPN 
Sbjct: 330 CKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNE 389

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +T +I+  ++ G L+ A  I  +M  +GF P+  TY+  +  H    +++ A+ +   
Sbjct: 390 RTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQE 449

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           M   GL P + +Y+ +++   ++  +D A ++  EM   G S D
Sbjct: 450 MVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPD 493



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 137/334 (41%), Gaps = 48/334 (14%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA------------ 353
           + ++LM+ S +    +D A+      K   F P    + S++D++ ++            
Sbjct: 143 AVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVY 202

Query: 354 -------------------------GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
                                    G L   +  + EM+  G  P+   Y +LI++Y K 
Sbjct: 203 REMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKM 262

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G++D A  L   M   G +PN   + +II    + G +  A  I  +M   GF P   TY
Sbjct: 263 GRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTY 322

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + LL  +   G    A+ ++  M   G+ P + TYTAL+  + K + ++ A +   +M+ 
Sbjct: 323 NTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRI 382

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG-----IRTNNFIVRQLFESCMKN 562
            G   +      L+  + + G ++ A R L  M  SG     +  N FI        M+ 
Sbjct: 383 RGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEE 442

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           AL      +++  VE     D+V Y+++++   R
Sbjct: 443 AL-----GVVQEMVEKGLAPDVVSYSTIISGFCR 471



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 133/311 (42%), Gaps = 5/311 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKL 251
           + P +  Y  L +   +  +F   L +  EMV    +NG+S     Y  +I  + KA  L
Sbjct: 315 FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV----RNGVSPSVVTYTALINSMCKARNL 370

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
             +   F ++     + + ++Y  L+  F  +GL  +A+ I   M +   S    TY   
Sbjct: 371 NRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAF 430

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I       R++ A+ + QEM E+   P    +++++    + G LD + ++  EM   G 
Sbjct: 431 IHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGV 490

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P A  Y SLI+   +  +L  A  L  EM   G  P+   +T +I ++   G L+ A+ 
Sbjct: 491 SPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALH 550

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +  +M   GFLP   TYS L+       +   A +L   +      P   TY  L+   +
Sbjct: 551 LHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCS 610

Query: 492 KRKLVDVAAKI 502
             +   V A I
Sbjct: 611 NIEFKSVVALI 621



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 101/219 (46%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A E ++ M       +  TY  +I   ++ G L+ A ++  EM E  F PS   + + +
Sbjct: 372 RAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 431

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
                  R++ ++ V  EM   G  P    Y ++I  + + G+LD A ++  EM   G  
Sbjct: 432 HGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVS 491

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+   ++ +I+   +  +L  A  +  +M   G  P   TY+ L+  +   G ++ A+ L
Sbjct: 492 PDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHL 551

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           ++ M   G  P   TY+ L+  L K+     A ++L ++
Sbjct: 552 HDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKL 590



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 38/202 (18%)

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF------------------------ 406
           +  S+ ++  +++SY+    +D A+   +  + +GF                        
Sbjct: 138 YNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLS 197

Query: 407 -------------RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
                         PN   + ++I      G+L   +  F +MER G LP   TY+ L++
Sbjct: 198 AEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLID 257

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +   G++D A  L  SM+S G++P L +Y  ++  L +   +  A +IL EM   G++ 
Sbjct: 258 AYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTP 317

Query: 514 D-VSASDVLMVYIKDGSVDHAL 534
           D V+ + +L  Y K+G+   AL
Sbjct: 318 DEVTYNTLLNGYCKEGNFHQAL 339



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 15/257 (5%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +IQ L +  +L  +    +++LD     D  +Y  L+  +  +G   KA  +++ M
Sbjct: 496 TYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEM 555

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS---------------FN 341
                  D  TY ++I  L K  R   A +L  ++      PS               F 
Sbjct: 556 IHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFK 615

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
              +L+      G +  + +V+  M    H+P   +Y  +I  + + G L  A  L+ EM
Sbjct: 616 SVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 675

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
             +GF P+      +I++  K G  +    +  D  R+  L        L+E++   G +
Sbjct: 676 IHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNM 735

Query: 462 DSAMKLYNSMTSAGLRP 478
           ++ + +   M   GL P
Sbjct: 736 EAVLNVLTDMAKDGLLP 752



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 95/234 (40%), Gaps = 19/234 (8%)

Query: 194 VPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK-ADKL 251
           +P DE  Y  L +      D +  L L DEM+H   K  +     Y+ +I  L K A   
Sbjct: 525 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIH---KGFLPDAVTYSVLINGLNKQARTR 581

Query: 252 EMSYCCFKKVLD----SDCKIDT----------QSYNVLMTLFLNKGLPYKAFEIYESME 297
           E     FK + +    SD   DT          +S   L+  F  KGL ++A  ++ESM 
Sbjct: 582 EAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMV 641

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +       + Y ++I    + G L  A  L++EM    F P      +L+ ++ K G  +
Sbjct: 642 ERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNE 701

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
              +V  +         A +   L+E   K G ++  L +  +M   G  PN G
Sbjct: 702 EMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVLTDMAKDGLLPNSG 755


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 179/401 (44%), Gaps = 4/401 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L   L+ S      L+LF+EM     +  +     Y  +I  L K +K++ +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVH---TYTVLIDGLCKENKMDEA 353

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                ++ +        +YN L+  +  +G+   AFEI + ME   C  +  TY  +I  
Sbjct: 354 RKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICG 413

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K  ++  A+ L  +M ER   PS   + SL+    K   L+++ ++   M   G  P 
Sbjct: 414 LCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPD 473

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y   I++  K G+++ A  L+D ++  G + N  ++T +I+ + K GK+D+A S+  
Sbjct: 474 QWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLE 533

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M     LP   TY+ L+E      ++  A  L   M + G++P + TYT L+  + K  
Sbjct: 534 RMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDG 593

Query: 495 LVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
             D A K+   M ++GY  DV   +  L  Y   G ++     +  M   GI  +     
Sbjct: 594 AFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYT 653

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            L +   +  L   A   L+  V++  K  L + + ++ +L
Sbjct: 654 VLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNL 694



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 168/396 (42%), Gaps = 36/396 (9%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L +A ++  +   F  + + +C    ++Y VL+      G   +A  ++  M
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++  C  +  TY ++I  L K  ++D A K+  EM E+   PS   + +L+D   K G +
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385

Query: 357 DTSMKV--YMEMQGCG-------------------HR--------------PSAPMYVSL 381
           D + ++   ME   CG                   H+              PS   Y SL
Sbjct: 386 DDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSL 445

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I    K   L++A RL   M   G  P+   +++ I++  K G+++ A ++F  ++  G 
Sbjct: 446 IHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGV 505

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
                 Y+ L++ +   G++D A  L   M +    P   TY  L+  L K K +  A+ 
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           ++ +M TMG    V    +L+   +KDG+ DHAL+    M S G + +         +  
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYF 625

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              + E    ++    E     DLV YT ++    R
Sbjct: 626 SQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 150/336 (44%), Gaps = 9/336 (2%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C+ +  SY  L+      G   +A +++  M +  C     TY ++I +L+ SGR   A+
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL 319

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            LF EMKE+   P+ + +  L+D + K  ++D + K+  EM   G  PS   Y +LI+ Y
Sbjct: 320 NLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGY 379

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K G +D A  + D M      PN   +  +I    K  K+  AM++   M      P+ 
Sbjct: 380 CKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSL 439

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ L+        ++SA +L + M   GL P   TY+  +  L K   V+ A  +   
Sbjct: 440 ITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDS 499

Query: 506 MKTMGYSVDVSASDVLMV-----YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +K  G    V A++V+       Y K G +D A   L  M +     N++    L E   
Sbjct: 500 VKAKG----VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLC 555

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           K    + A  L+   +    K  +V YT ++  +++
Sbjct: 556 KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLK 591



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/480 (21%), Positives = 215/480 (44%), Gaps = 29/480 (6%)

Query: 136 AKIVEVVNR--WKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWY 193
           A+++ +++R  W+  P L   L  L   P   H++       D  T+LS F W   +  +
Sbjct: 42  AQLLSILSRPNWQKHPSLRKLLPSL--TPS--HVSSLFAFNLDPQTALSFFNWIALRPGF 97

Query: 194 VPGDECYVMLFDVLNESR--------------------DFDGMLSLFDEMVHDSSKNGIS 233
                 Y  + ++L  +R                    D   +L +F +M  D       
Sbjct: 98  KHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGEFKFKP 157

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
               YN ++  L+K   ++     + ++L++    +  ++N ++  +   G   +A E+Y
Sbjct: 158 TLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEA-ELY 216

Query: 294 ES-MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            S + +     D  TY  +I    ++  +D A ++F  M ++  + +   + +L+  + +
Sbjct: 217 ASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCE 276

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
           AGR++ ++K++ +M      P+   Y  LI + + +G+   AL L++EM+  G  PN   
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +T++I+   K  K+D A  + ++M   G +P+  TY+ L++ +   G +D A ++ + M 
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVD 531
           S    P   TY  L+  L K++ V  A  +L +M     S   ++ + ++    K   ++
Sbjct: 397 SNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLE 456

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A R L  M  +G+  + +      ++  K    E A  L ++      K + V+YT+++
Sbjct: 457 SAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/482 (22%), Positives = 198/482 (41%), Gaps = 32/482 (6%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L   L + R     ++L ++M+    K   SL + YN +I    K + LE +
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLE--RKLSPSLIT-YNSLIHGQCKVNDLESA 458

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           Y     + ++    D  +Y+V +     +G   +A  +++S++      +   Y  +I  
Sbjct: 459 YRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K G++D A  L + M      P+   +  L++ + K  ++  +  +  +M   G +P+
Sbjct: 519 YCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPT 578

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI    K G  D AL++++ M   G++P+   +T  + ++   G L+    +  
Sbjct: 579 VVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIA 638

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA-KR 493
            M   G LP   TY+ L++ +A  G    A      M   G +P L   + L+  L+ + 
Sbjct: 639 KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHEN 698

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
           ++ +  ++I ++  +   SVD+  +DV     K    + AL+    M   G   +  I  
Sbjct: 699 RMKETRSEIGIDSVSNVNSVDI--ADVW----KTLEYEIALKLFEKMVEHGCTIDVSIYG 752

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL---------AHLVRCQDEQNER 604
            L     +    E A+ L+    E        +Y S+L         A  VR  D   E 
Sbjct: 753 ALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVEN 812

Query: 605 HLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGI---DYELEEGAARYFVNV 661
            L+ +L + K      +CGL+      K       +  FHG+    Y  +E A +  ++ 
Sbjct: 813 GLLPLLESYK----LLVCGLYIEGSNEK------AKAVFHGLLSCGYNYDEVAWKVLIDG 862

Query: 662 LL 663
           LL
Sbjct: 863 LL 864



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 119/301 (39%), Gaps = 32/301 (10%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L   + +   FD  L +F+ MV    +  +  ++A+  +  Y ++   LE       
Sbjct: 582 YTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF--LHAYFSQG-MLEEVDDVIA 638

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+ +     D  +Y VL+  +   GL ++AF+  + M    C        ++I +L+   
Sbjct: 639 KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHEN 698

Query: 320 RL-----------------------------DAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           R+                             + A+KLF++M E       +I+ +L+   
Sbjct: 699 RMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGF 758

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            +  RL+ +  +   M+  G  PS  +Y SL++   K G    A+RL D M   G  P  
Sbjct: 759 CQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLL 818

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             + +++      G  + A ++F  +   G+      +  L++       VD   +L + 
Sbjct: 819 ESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDI 878

Query: 471 M 471
           M
Sbjct: 879 M 879



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 1/157 (0%)

Query: 283 KGLPYK-AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
           K L Y+ A +++E M +  C++D S Y  +I    +  RL+ A  L   MKER   PS +
Sbjct: 725 KTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSED 784

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
           I+ SL+D   K G    ++++   M   G  P    Y  L+      G  + A  ++  +
Sbjct: 785 IYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGL 844

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
              G+  +   + ++I+   K   +D    +   ME 
Sbjct: 845 LSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEE 881


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 182/403 (45%), Gaps = 19/403 (4%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKL 251
           P    + +L + L + R  D  L +F++M +    NG  +      YN +I  L K  + 
Sbjct: 338 PNVVTFGILINHLCKFRRVDEALEVFEKM-NGGESNGFLVEPDVITYNTLIDGLCKVGRQ 396

Query: 252 EMSYCCFKKVLDSD-CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           E      +++     C  +T +YN L+  +    +   A E+++ M K     +  T   
Sbjct: 397 EEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNT 456

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++  + K GR++ A++ F EM+ +  + +   + +L+ +      ++ +M+++ EM   G
Sbjct: 457 LVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAG 516

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P A +Y +LI   ++AGKLD A  +  +M+ AGF P+   F ++I    +  KLD A 
Sbjct: 517 CSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAY 576

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +  +ME AG  P   TY+ L+   + +G   +A +L   M   GL P + TY AL+   
Sbjct: 577 EMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAY 636

Query: 491 AKRKLVDVAAKILLEM--------KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542
                +D A KI  +M         T+ Y++ +++        +   VD AL  +  M  
Sbjct: 637 CLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINS------LCRKNQVDLALSLMDDMKV 690

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
            G++ N      +F+   +      A  L++   E A   D +
Sbjct: 691 KGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYI 733



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/438 (21%), Positives = 189/438 (43%), Gaps = 49/438 (11%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHD------SSKNGISLFSAYNRVIQYLAKADKLEMSY 255
           +L DVL      D  L L DEM+        +S  G  +FSA ++  +     D+ E+  
Sbjct: 197 ILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEI-V 255

Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
               K  + +   ++     L++     G   +A+++   + K    ++ ++   ++ +L
Sbjct: 256 GLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTAL 315

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG------- 368
            ++        L  EMKE + +P+   F  L++ + K  R+D +++V+ +M G       
Sbjct: 316 GRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFL 375

Query: 369 -----------------CGHR-----------------PSAPMYVSLIESYAKAGKLDTA 394
                             G +                 P+   Y  LI+ Y KA  ++ A
Sbjct: 376 VEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAA 435

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             L+D+M   G  PN      +++   K G+++ A+  F +M+  G      TY+ L+  
Sbjct: 436 RELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRA 495

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
             +   ++ AM+L++ M  AG  P    Y  L++ L++   +D A+ +L +MK  G+S D
Sbjct: 496 FCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPD 555

Query: 515 VSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           + + +VL+  + +   +D A   L+ M ++GI+ +      L     K   + +A  L++
Sbjct: 556 IVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMK 615

Query: 574 TYVESAAKVDLVLYTSVL 591
             V+      +V Y +++
Sbjct: 616 KMVKEGLVPTVVTYGALI 633



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 156/382 (40%), Gaps = 46/382 (12%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGI 232
           +   +  L L    + Q   +P    Y  L D   ++   +    LFD+M  D    N +
Sbjct: 393 VGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVV 452

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           +L    N ++  + K  ++  +   F ++     K +  +Y  L+  F N     KA E+
Sbjct: 453 TL----NTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMEL 508

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           ++ M +  CS D   Y  +I  L+++G+LD A  +  +MKE  F P    F  L++   +
Sbjct: 509 FDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCR 568

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG------- 405
             +LD + ++  EM+  G +P    Y +LI  ++K G   TA RL  +M   G       
Sbjct: 569 KNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVT 628

Query: 406 --------------------FR---------PNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
                               FR         PN  ++ ++I S  +  ++D+A+S+  DM
Sbjct: 629 YGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDM 688

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +  G  P  +T++ + +       +  A +L + MT     P   T   L   L+     
Sbjct: 689 KVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSA---- 744

Query: 497 DVAAKILLEMKTMGYSVDVSAS 518
            V     L+    GY V  SA+
Sbjct: 745 -VGETAKLKSFVQGYEVSASAA 765



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 128/633 (20%), Positives = 248/633 (39%), Gaps = 89/633 (14%)

Query: 132 ASAVAKIVEVV----NRWKWGPELETQLDKLQFVPKMV-----HITQALKVINDSDTSLS 182
           +S V  +VE++    N W      E +L +L F          ++ Q  +++  +  +L 
Sbjct: 51  SSVVNLVVELLQTTDNDWN-----EDKLHQLLFPTTSPPPPPHNLLQITRLLGSTAKALK 105

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVL----NESRDFDGMLSLFDEMVHDSSKNGISL-FSA 237
            F W +  S   P  +  ++ F +     + SR+ +    L D +   S  + I L  +A
Sbjct: 106 FFNWVQANS---PCQDSPLLSFTLEAVFEHASREPNSHNKLLD-LFKTSKSHKIPLSVNA 161

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM- 296
              +I+   +A  ++ S+  + ++  S  +  T   N+L+ +   KG    A  + + M 
Sbjct: 162 ATLLIRCFGRAQMVDESFLVYNELCPS--RRLTHIRNILIDVLFRKGRVDDALHLLDEML 219

Query: 297 -EKGECSLDGSTYELMIPSLAKSGRLDAAIK------LFQEMKERNFRPSFNIFASLVDS 349
             K E   + +T  ++  +L+K  ++  A+       L  +  E    P+      L+  
Sbjct: 220 QPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISR 279

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + ++GR D +  V   +   G    A    +L+ +  +A +      L  EM+    +PN
Sbjct: 280 LCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPN 339

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDM---ERAGFLPTPS--TYSCLLEMHASSGQVDSA 464
              F ++I    K  ++D A+ +F  M   E  GFL  P   TY+ L++     G+ +  
Sbjct: 340 VVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEG 399

Query: 465 MKLYNSMTSAG-LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523
           + L   M S     P   TY  L+    K  +++ A ++  +M   G   +V   + L+ 
Sbjct: 400 LGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVD 459

Query: 524 YI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAK 581
            + K G ++ A+ +   M   G++ N      L  + C  N + E A  L +  +E+   
Sbjct: 460 GMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNI-EKAMELFDEMLEAGCS 518

Query: 582 VDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVRE 641
            D ++Y ++++ L +                              G   R   VLS ++E
Sbjct: 519 PDAIVYYTLISGLSQ-----------------------------AGKLDRASFVLSKMKE 549

Query: 642 FFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWS 701
                D            NVL+N      +++ A  + K      + P  + ++  I+  
Sbjct: 550 AGFSPDI--------VSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHF 601

Query: 702 LDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVP 734
               + S          T HR  K+M+  G+VP
Sbjct: 602 SKTGDFS----------TAHRLMKKMVKEGLVP 624


>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/526 (22%), Positives = 230/526 (43%), Gaps = 22/526 (4%)

Query: 268 IDTQSYNVLMTLFLNKGLPYK-AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           ++  +YNV++ + L +G  ++ + +I E M   +   D  TY  +I    +    DAA+ 
Sbjct: 41  LNIYTYNVMLKV-LRRGRQWEFSQQIAEDMANADVRPDNITYSTLISCANRCNYQDAAMA 99

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
            F  M E    P    +++++D  GK G+ D ++ +Y  ++  G +P    Y +++  + 
Sbjct: 100 WFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLFG 159

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           +AG +  A+ +++EM+ +G +P+  ++ ++I    ++G++  A+ +F +MER G  P   
Sbjct: 160 RAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAV 219

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           T S ++E ++  G V   ++++  +   G+   +  Y A+L +  +  L   A + L EM
Sbjct: 220 TLSTVMETYSRCGNVMEGLEVFQRLRQ-GVACDVIVYNAVLKMCREAGLASEAEQYLREM 278

Query: 507 KTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
              G+   D +  +++ VY K G    A R    M  +G + +      L ++      Y
Sbjct: 279 TESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLLQAYGNAKEY 338

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLF 625
              + +L+         D  L   +L  L  C  ++    L + L          +  +F
Sbjct: 339 NKVQEILDEMTSVNCAPDERLCCVILNLLDSCDTDEELGILRSCLRMCSSTMDTIVGQIF 398

Query: 626 TGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYEN 685
                 +  VL  +R     +  ++ E A +   N L+      G  N +  +  +    
Sbjct: 399 -----EENLVLRELRGELQSLLSDITEEAHKPICNSLMQLSWHKGDRNHSFQLLSLFRVL 453

Query: 686 KLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGP-- 743
            ++   +       WSL +R+LS GAA  A++  L   R  +     +P RI + TG   
Sbjct: 454 GVYT-GLQTKSPTMWSLHLRSLSTGAAHCALLSWLSSVRYAIKEGQELPGRIIIETGVGN 512

Query: 744 -------TLKIVIAQMLSSVESPFEVS---KVVLRAPGDSVMEWFK 779
                   L +VI+ +L    SPF+     K  L A G  V +W +
Sbjct: 513 QLNADEFRLIVVISSLLKECSSPFKECADRKDWLEASGVDVTQWLE 558



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 158/319 (49%), Gaps = 7/319 (2%)

Query: 206 VLNESRDFDGMLSLFDEM--VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263
           +LN  + +   L LF  +   H SS N       YN +++ L +  + E S    + + +
Sbjct: 16  ILNSLKSWRQALLLFRWLRAEHSSSLN----IYTYNVMLKVLRRGRQWEFSQQIAEDMAN 71

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
           +D + D  +Y+ L++          A   ++ M +  C  D  TY  MI    K G+ D 
Sbjct: 72  ADVRPDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDE 131

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           AI L++ +K+  ++P    + ++V   G+AG +  ++ ++ EM+G G +P A +Y  +I 
Sbjct: 132 AIALYERVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIA 191

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
              +AG++  AL++++EM   G +PN    + ++E++++ G +   + +F  + R G   
Sbjct: 192 CLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRL-RQGVAC 250

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
               Y+ +L+M   +G    A +    MT +G +P   TY  ++++ AK+ +   A +  
Sbjct: 251 DVIVYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTF 310

Query: 504 LEMKTMGYSVDVSASDVLM 522
            +M   GY +DV A   L+
Sbjct: 311 SQMVEAGYQIDVMAYTSLL 329


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 134/576 (23%), Positives = 250/576 (43%), Gaps = 54/576 (9%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D      D +    + DEMV    +  + +   +N ++  + KA K+E +    +
Sbjct: 314 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLII---WNTLLNGVCKAGKMEKALEIMQ 370

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK---------------GEC--- 301
           ++++   + D+Q+Y++L+          +AFE+ + M+K               G C   
Sbjct: 371 EMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 430

Query: 302 SLDGST-----------------YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           +L G+                  Y  ++ + AK GR++ +  + + M+E+   P    + 
Sbjct: 431 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 490

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           SL+    KA R++ +    MEM     RP+A  Y + I+ Y+KAG+++ A R ++EM   
Sbjct: 491 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSC 550

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  PN G++T +IE H K G +  A S+F  +     L    TYS L+   + +G++  A
Sbjct: 551 GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEA 610

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
             +++ +   GL P   TY +L++   K+  VD A+++L EM   G + D+   ++L+  
Sbjct: 611 FGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDG 670

Query: 525 I-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           + K G ++ A      +   G+  N      + +   K+    +A  LLE  +      D
Sbjct: 671 LCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPD 730

Query: 584 LVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFF 643
             +Y  +L     C++E+ E+ L  +      K  A      T  E   +     ++E  
Sbjct: 731 AFIYNVILNFC--CKEEKFEKAL-DLFQEMLEKGFASTVSFNTLIEGYCKS--GKLQEAN 785

Query: 644 HGIDYELEEGAARYFVNVLLNYLVLM------GQINRARCVWKVAYENKLFPKAIVFDQH 697
           H     LEE   + F+   + Y  L+      G +  A+ +W    E  + P A  +   
Sbjct: 786 H----LLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSL 841

Query: 698 IAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVV 733
           +    ++ N+S  +AL   M        +M YY ++
Sbjct: 842 LHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 877



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 145/337 (43%), Gaps = 3/337 (0%)

Query: 258 FKKVLDSDCKIDT--QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
           +  ++ + CK+     +  VL+ +     L  +A E+  SM       D  TY+++I   
Sbjct: 227 YTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGF 286

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
               R   A  +  EM +   +P    + +L+D   + G ++ + ++  EM  CG   + 
Sbjct: 287 CMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANL 346

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
            ++ +L+    KAGK++ AL +  EM   G  P+   ++++IE H +   +  A  +  +
Sbjct: 347 IIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDE 406

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M++    PT  TYS ++      G +     +   M   GL+P    YT L+T  AK   
Sbjct: 407 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGR 466

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           V+ +  IL  M+  G   DV   + L++ + K   ++ A  +L  M    +R N      
Sbjct: 467 VEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGA 526

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             +   K    E A       +      ++ +YT+++
Sbjct: 527 FIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 563



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 163/375 (43%), Gaps = 25/375 (6%)

Query: 223 MVHDSSKNG-----ISLFS------------AYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
           ++H  S+NG       +FS             YN +I    K   ++ +    +++    
Sbjct: 597 LIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKG 656

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
              D  +YN+L+      G   +A  +++ +E    + +  TY  M+    KS    AA 
Sbjct: 657 INPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAF 716

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +L +EM  R   P   I+  +++   K  + + ++ ++ EM   G   S   + +LIE Y
Sbjct: 717 QLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGY 775

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K+GKL  A  L +EM    F PN   +T +I+ + K+G +  A  ++ +M+    +PT 
Sbjct: 776 CKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTA 835

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ LL  + + G +     L+  M + G+ P   TY  ++    +   V  A K+  E
Sbjct: 836 KTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDE 895

Query: 506 M--KTM----GYSVDVSASDVLMVYIK-DGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
           +  K M    G+ + +    V+    +  G++D A   LR M   G  +N   +  L + 
Sbjct: 896 ILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDG 955

Query: 559 CMKNALYESAKPLLE 573
               A  E +  LL+
Sbjct: 956 NQNGANSEDSDNLLK 970



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 110/520 (21%), Positives = 199/520 (38%), Gaps = 90/520 (17%)

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           SL S  N ++  L K +K+E+    F KV D  C     ++ VL  ++            
Sbjct: 188 SLLSC-NSLLGDLLKGNKVEL----FWKVFDGMC-----AHKVLPDVY-----------T 226

Query: 293 YESMEKGECSLDG--STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           Y +M    C +        +++    K+  LD AI+L + M ++   P    +  L++  
Sbjct: 227 YTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGF 286

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
               R   +  + +EM   G +P    Y +LI+ + + G ++ A R+ DEM   G   N 
Sbjct: 287 CMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANL 346

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
            ++  ++    K+GK++ A+ I  +M   G  P   TYS L+E H     +  A +L + 
Sbjct: 347 IIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDE 406

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV 530
           M    L P + TY+ ++  L +                                   G++
Sbjct: 407 MKKRKLAPTVLTYSVIINGLCRC----------------------------------GNL 432

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
                 LR M  +G++ N  +   L  +  K    E ++ +LE   E     D+  Y S+
Sbjct: 433 QGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSL 492

Query: 591 LAHLVRCQD-EQNERHLMAILS----ATKHKAHAFLCGLFTGPEQR----------KQPV 635
           +    + +  E+   +LM +L        H   AF+ G     E               V
Sbjct: 493 IIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGV 552

Query: 636 LSFVREFFHGIDYELEEGAA-------RYFV-----------NVLLNYLVLMGQINRARC 677
           L  V  +   I+   +EG         R+ +           +VL++ L   G+++ A  
Sbjct: 553 LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 612

Query: 678 VWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVM 717
           ++    E  L P A  ++  I+ S    N+   + L+  M
Sbjct: 613 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 114/266 (42%), Gaps = 19/266 (7%)

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
           N  P+  IF  L+DS  K G L  ++ V++  +    RPS     SL+    K  K++  
Sbjct: 149 NGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELF 208

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            +++D M      P+   +T +I +H K G +  A  +                  LLEM
Sbjct: 209 WKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV------------------LLEM 250

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +  +D A++L  SM   GL P L TY  L+      K    A  +LLEM  +G   +
Sbjct: 251 GEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPE 310

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            ++ + ++  +++ G ++ A R    M + GI  N  I   L     K    E A  +++
Sbjct: 311 PITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQ 370

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQD 599
             +E   + D   Y+ ++    R Q+
Sbjct: 371 EMMEKGVEPDSQTYSLLIEGHCRGQN 396


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 185/398 (46%), Gaps = 6/398 (1%)

Query: 200 YVMLFD-VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L D    + R  DG   L  EMV    +     F  YN ++  L K+ K   ++   
Sbjct: 309 YNILIDGYCKQERPQDGA-KLLQEMVKYGCEPN---FITYNTLMDSLVKSGKYIDAFNLA 364

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           + +L  DCK    ++N+++ +F   G    A+E+++ M    C  D  TY +MI    ++
Sbjct: 365 QMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRA 424

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
            R+D A +L + M E    P    + S+V  + KA ++D + +VY  ++  G+       
Sbjct: 425 NRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTC 484

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +LI+   K+ +LD A +L  EM   G  P+   +T++I    K+ +LD +++ F++M  
Sbjct: 485 STLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLD 544

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G +PT  TYS +++    S +V     L  +M   G+ P    YT+++  L K    D 
Sbjct: 545 KGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDE 604

Query: 499 AAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A ++   MK  G +  V   +VL+  + K   +D A+  L  M S G   +      +F+
Sbjct: 605 AYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFD 664

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
              K+A ++ A  L +            +Y+ +L  LV
Sbjct: 665 GFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLV 702



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 186/404 (46%), Gaps = 5/404 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP +  Y  +   L ++   D  L  + +M  + + + I+    Y  ++  L K+ ++  
Sbjct: 199 VPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVIT----YTILVDALCKSARISD 254

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +    + ++++ C  +  +YN L+  F   G   +A  ++  M +  CS D  TY ++I 
Sbjct: 255 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 314

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              K  R     KL QEM +    P+F  + +L+DS+ K+G+   +  +   M     +P
Sbjct: 315 GYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKP 374

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           S   +  +I+ + K G+LD A  L+  M   G  P+   + ++I    ++ ++D A  + 
Sbjct: 375 SHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLL 434

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M  AG  P   TY+ ++     + QVD A ++Y  + + G    + T + L+  L K 
Sbjct: 435 ERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKS 494

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
           + +D A K+L EM+  G + DV A  +L+  + K   +D +L +   M   G        
Sbjct: 495 RRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITY 554

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             + +   K+A       LL+T +E     D ++YTSV+  L +
Sbjct: 555 SIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCK 598



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 152/329 (46%), Gaps = 12/329 (3%)

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N L++ F+ K    +A++++++   G CS D  TY  +I    K+     A +L  EM++
Sbjct: 136 NCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 195

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ-GCGHRPSAPMYVSLIESYAKAGKLD 392
           R   P   ++ +++  +   GR+D+++  Y +MQ  C   PS   Y  L+++  K+ ++ 
Sbjct: 196 RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCA--PSVITYTILVDALCKSARIS 253

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A  + ++M  AG  PN   +  +I    K G +D A+ +F  M      P   TY+ L+
Sbjct: 254 DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILI 313

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR-KLVDV--AAKILL--EMK 507
           + +    +     KL   M   G  P   TY  L+  L K  K +D    A+++L  + K
Sbjct: 314 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 373

Query: 508 TMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
              ++ ++    ++ ++ K G +D A    + M   G   + +    +     +    + 
Sbjct: 374 PSHFTFNL----MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDD 429

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           A+ LLE   E+    D+V Y S+++ L +
Sbjct: 430 ARQLLERMTEAGCPPDVVTYNSIVSGLCK 458



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 131/285 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++  L KA +++ +Y  ++ + +    +D  + + L+           A ++   M
Sbjct: 448 TYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM 507

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+   + D   Y ++I    K+ +LD ++  F EM ++   P+   ++ ++D + K+ R+
Sbjct: 508 ERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARV 567

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
                +   M   G  P A +Y S+I+   K+   D A  L+  M+  G  P    + ++
Sbjct: 568 RDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVL 627

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K  +LD A+ +   ME  G LP   TY+ + +    S + D A +L+ +M S G 
Sbjct: 628 VDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGC 687

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
            P    Y+ LLT L   + +D A +I  E    G  VD   S  L
Sbjct: 688 SPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRTL 732


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 177/396 (44%), Gaps = 2/396 (0%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           +L  + +E+R  +  L L   M  D          +YN V+    K    + +Y  + ++
Sbjct: 169 LLKGLCDENRSQEA-LELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEM 227

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           LD     D  +Y+ ++          KA E+  +M K     D  TY  ++     SG+ 
Sbjct: 228 LDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 287

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             AI   ++M+     P+   ++SL++ + K GR   + K++  M   G  P    Y +L
Sbjct: 288 KEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTL 347

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           ++ YA  G L     L D M   G +P+  +F ++I ++AK  K+D AM +F+ M + G 
Sbjct: 348 LQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P    Y  ++++   SG VD AM  +  M   GL P +  YT+L+  L      D A +
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 502 ILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           ++LEM   G  ++ +  + ++  + K+G V  + +    M   G++ +      L + C 
Sbjct: 468 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCC 527

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                + A  LL + V    K D+V Y +++    R
Sbjct: 528 LAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCR 563



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 169/377 (44%), Gaps = 1/377 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ ++ YL K  +   +   F  +     + D  +Y  L+  +  KG   +   + + M
Sbjct: 308 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 367

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D   + ++I + AK  ++D A+ +F +M++    P+   + +++D + K+G +
Sbjct: 368 VRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSV 427

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +M  + +M   G  P+  +Y SLI       K D A  L  EM   G   N   F  I
Sbjct: 428 DDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSI 487

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+SH K G++  +  +F  M R G  P   TY+ L++    +G++D A KL  SM S G+
Sbjct: 488 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
           +P + TY  L+    +   +D A  +  EM + G S ++   ++++  +       A + 
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKE 607

Query: 537 LRF-MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           L   +  SG +        +     KN L + A  + +    +  +++   +  ++  L+
Sbjct: 608 LYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALL 667

Query: 596 RCQDEQNERHLMAILSA 612
           +C      + L A  SA
Sbjct: 668 KCGRMDEAKDLFAAHSA 684



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 174/379 (45%), Gaps = 6/379 (1%)

Query: 219 LFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +FD M    +K G+    + Y  ++Q  A    L   +     ++ +  + D   +N+L+
Sbjct: 328 IFDSM----TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILI 383

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             +  +    +A  ++  M +   + +   Y  +I  L KSG +D A+  F++M +    
Sbjct: 384 CAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLT 443

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P+  ++ SL+  +    + D + ++ +EM   G   +   + S+I+S+ K G++  + +L
Sbjct: 444 PNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 503

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +D M   G +P+   +  +I+    +GK+D A  +   M   G  P   TY  L+  +  
Sbjct: 504 FDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCR 563

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
             ++D A+ L+  M S+G+ P + TY  +L  L   +    A ++ + +   G  +++S 
Sbjct: 564 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELST 623

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            ++++  + K+   D ALR  + +  + ++        +  + +K    + AK L   + 
Sbjct: 624 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHS 683

Query: 577 ESAAKVDLVLYTSVLAHLV 595
            +    D+  Y+ +  +L+
Sbjct: 684 ANGLVPDVRTYSLMAENLI 702



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 144/326 (44%), Gaps = 3/326 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P   CY  + DVL +S   D  +  F++M+ +     I +   Y  +I  L   
Sbjct: 403 RQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIV---YTSLIHGLCTC 459

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
           DK + +     ++LD    ++T  +N ++     +G   ++ ++++ M +     D  TY
Sbjct: 460 DKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 519

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I     +G++D A KL   M     +P    + +L++   +  R+D ++ ++ EM  
Sbjct: 520 NTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVS 579

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+   Y  +++      +   A  L+  +  +G +     + +I+    K+   D 
Sbjct: 580 SGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDE 639

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+ +F ++          T++ ++      G++D A  L+ + ++ GL P + TY+ +  
Sbjct: 640 ALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAE 699

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVD 514
            L ++  ++    + L M+  G S D
Sbjct: 700 NLIEQGSLEELDDLFLSMEENGCSAD 725



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 135/354 (38%), Gaps = 43/354 (12%)

Query: 286 PYKAFEIYESMEK---GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +   G+ +    TY ++I    ++GRLD        + ++ FR     
Sbjct: 70  PAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAIT 129

Query: 343 FASLVDSMGKAGRLDTSMKVYM-------------------------------------- 364
           F  L+  +    R   +M + +                                      
Sbjct: 130 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMM 189

Query: 365 -EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            + +G G  P    Y +++  + K G  D A   + EM   G  P+   ++ II +  K+
Sbjct: 190 ADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKA 249

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
             +D AM +   M + G +P   TY+ +L  + SSGQ   A+     M S G+ P + TY
Sbjct: 250 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTY 309

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGS 542
           ++L+  L K      A KI   M   G   D++    L+  Y   G++      L  M  
Sbjct: 310 SSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR 369

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +GI+ ++ +   L  +  K    + A  +     +     ++V Y +V+  L +
Sbjct: 370 NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCK 423



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 95/217 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    +  +++ +   FK+++ S    +  +YN+++    +      A E+Y S+
Sbjct: 553 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 612

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K    L+ STY +++  L K+   D A+++FQ +   + +     F  ++ ++ K GR+
Sbjct: 613 TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRM 672

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  ++      G  P    Y  + E+  + G L+    L+  M   G   +  +   I
Sbjct: 673 DEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSI 732

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           +    + G +  A +    ++   F    ST S LLE
Sbjct: 733 VRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 769



 Score = 45.1 bits (105), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 128/325 (39%), Gaps = 42/325 (12%)

Query: 429 AMSIFTDMERAG---FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           A+S +  M RAG     PT  TY+ L+     +G++D       ++   G R    T+T 
Sbjct: 73  AVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTP 132

Query: 486 LLT-LLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSS 543
           LL  L A ++  D    +L  M  +G   DV S +++L     +     AL  L  M   
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 544 -------GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                   + + N ++   F+    +  Y +   +L+  +      D+V Y+S++A L  
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILP----DVVTYSSIIAAL-- 246

Query: 597 CQDEQNERHLMAILSATKHKA-------HAFLCGLFTGPEQRKQPVLSFVREFFHGIDYE 649
           C+ +  ++ +  + +  K+         ++ L G +    Q K+ + +  +    G+   
Sbjct: 247 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG-YCSSGQPKEAIGTLKKMRSDGV--- 302

Query: 650 LEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSV 709
            E     Y  + L+NYL   G+   AR ++    +  L P    +          R L  
Sbjct: 303 -EPNVVTY--SSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATY----------RTLLQ 349

Query: 710 GAALIAVMHTLHRFRKRMLYYGVVP 734
           G A    +  +H     M+  G+ P
Sbjct: 350 GYATKGALVEMHALLDLMVRNGIQP 374


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 197/409 (48%), Gaps = 10/409 (2%)

Query: 167 ITQAL-KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           I+Q L +  ND   +L LF WAK Q+ YV   + Y ++ D+L   + F  M  L  EM  
Sbjct: 134 ISQLLNRFCNDWVPALGLFTWAKHQTGYVHPPDLYDLMVDILGRRKKFSFMWELVKEM-- 191

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
           ++ +  +SL +   +V++ LA+A   + +   F+ +     + D ++ NVLM   + +G 
Sbjct: 192 ENLEGYVSLVTM-KKVMRRLARAGNFQDAVEAFRGIEKLGVRKDIEALNVLMDALVKEGS 250

Query: 286 PYKAFEIYESME-KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
              A+  +  ME K    +D  ++ +++    K+ +LD A K+  EM ++ F+P+   + 
Sbjct: 251 VEHAYSAF--MEFKDSIHVDFQSFNILLHGYCKARKLDDARKIMDEMDKQGFQPNVVSYT 308

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
             ++   K         ++ EMQ    +P+   Y   + +  KA +++ AL +++ M+  
Sbjct: 309 CFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSN 368

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
              P+   ++ +I    +SG+L  A  +F DM++ G  P   TY+ ++    +  + ++A
Sbjct: 369 CCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENA 428

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV- 523
           +KL   M     +P + TY  LL +  ++K + V   +L  M     S+D+  + VL+V 
Sbjct: 429 LKLLRRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDL-GTYVLLVG 487

Query: 524 -YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
              K G ++ A  +   M   G+   +   + L E   +N L E+ + +
Sbjct: 488 GLCKSGKLELACSFFEEMVMKGLIPRDRTYKMLVEELEQNNLTEAKEKI 536


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 134/573 (23%), Positives = 248/573 (43%), Gaps = 54/573 (9%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D      D +    + DEMV    +  + +   +N ++  + KA K+E +    +
Sbjct: 323 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLII---WNTLLNGVCKAGKMEKALEIMQ 379

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK---------------GEC--- 301
           ++++   + D+Q+Y++L+          +AFE+ + M+K               G C   
Sbjct: 380 EMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 439

Query: 302 SLDGST-----------------YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           +L G+                  Y  ++ + AK GR++ +  + + M+E+   P    + 
Sbjct: 440 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 499

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           SL+    KA R++ +    MEM     RP+A  Y + I+ Y+KAG+++ A R ++EM   
Sbjct: 500 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSC 559

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  PN G++T +IE H K G +  A S+F  +     L    TYS L+   + +G++  A
Sbjct: 560 GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEA 619

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
             +++ +   GL P   TY +L++   K+  VD A+++L EM   G + D+   ++L+  
Sbjct: 620 FGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDG 679

Query: 525 I-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           + K G ++ A      +   G+  N      + +   K+    +A  LLE  +      D
Sbjct: 680 LCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPD 739

Query: 584 LVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFF 643
             +Y  +L     C++E+ E+ L  +      K  A      T  E   +     ++E  
Sbjct: 740 AFIYNVILNFC--CKEEKFEKAL-DLFQEMLEKGFASTVSFNTLIEGYCKS--GKLQEAN 794

Query: 644 HGIDYELEEGAARYFVNVLLNYLVLM------GQINRARCVWKVAYENKLFPKAIVFDQH 697
           H     LEE   + F+   + Y  L+      G +  A+ +W    E  + P A  +   
Sbjct: 795 H----LLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSL 850

Query: 698 IAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYY 730
           +    ++ N+S  +AL   M        +M YY
Sbjct: 851 LHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYY 883



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 206/491 (41%), Gaps = 14/491 (2%)

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC--KI--DTQSYNVLMTLFLNKGLPYK 288
           SL S  N ++  L K +K+E+    F KV D  C  K+  D  +Y  +++     G    
Sbjct: 179 SLLSC-NSLLGDLLKGNKVEL----FWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKD 233

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A  +   M +  CS +  TY ++I  L ++  LD AI+L + M ++   P    +  L++
Sbjct: 234 AKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILIN 293

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
                 R   +  + +EM   G +P    Y +LI+ + + G ++ A R+ DEM   G   
Sbjct: 294 GFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEA 353

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           N  ++  ++    K+GK++ A+ I  +M   G  P   TYS L+E H     +  A +L 
Sbjct: 354 NLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELL 413

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKD 527
           + M    L P + TY+ ++  L +   +     IL EM   G   +      LM  + K+
Sbjct: 414 DEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKE 473

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           G V+ +   L  M   GI  + F    L     K    E A+  L   +E   + +   Y
Sbjct: 474 GRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTY 533

Query: 588 TSVLAHLVRCQD-EQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGI 646
            + +    +  + E  +R+   +LS            L  G  +      +F   F   +
Sbjct: 534 GAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAF-SVFRFIL 592

Query: 647 DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRN 706
              + +    Y  +VL++ L   G+++ A  ++    E  L P A  ++  I+ S    N
Sbjct: 593 SRRVLQDVQTY--SVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGN 650

Query: 707 LSVGAALIAVM 717
           +   + L+  M
Sbjct: 651 VDKASQLLEEM 661



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 150/338 (44%), Gaps = 2/338 (0%)

Query: 237  AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             YN +I  L KA ++E +   F  +       +  +Y  ++  +     P  AF++ E M
Sbjct: 672  TYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM 731

Query: 297  EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                   D   Y +++    K  + + A+ LFQEM E+ F  + + F +L++   K+G+L
Sbjct: 732  LLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKSGKL 790

Query: 357  DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
              +  +  EM      P+   Y SLI+   KAG +  A RLW EM+     P    +T +
Sbjct: 791  QEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSL 850

Query: 417  IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
            +  +   G +    ++F +M   G  P   TY  +++ +   G V  A KL + +   G+
Sbjct: 851  LHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGM 910

Query: 477  RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK-DGSVDHALR 535
               ++ Y AL+  L K++      K+L E+   G+ + +    V+    +  G++D A  
Sbjct: 911  PMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAE 970

Query: 536  WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
             LR M   G  +N   +  L +     A  E +  LL+
Sbjct: 971  VLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLK 1008



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 151/342 (44%), Gaps = 19/342 (5%)

Query: 223 MVHDSSKNG-----ISLFS------------AYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
           ++H  S+NG       +FS             YN +I    K   ++ +    +++    
Sbjct: 606 LIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKG 665

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
              D  +YN+L+      G   +A  +++ +E    + +  TY  M+    KS    AA 
Sbjct: 666 INPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAF 725

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +L +EM  R   P   I+  +++   K  + + ++ ++ EM   G   S   + +LIE Y
Sbjct: 726 QLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGY 784

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K+GKL  A  L +EM    F PN   +T +I+ + K+G +  A  ++ +M+    +PT 
Sbjct: 785 CKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTA 844

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ LL  + + G +     L+  M + G+ P   TY  ++    +   V  A K+  E
Sbjct: 845 KTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDE 904

Query: 506 MKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR 546
           +   G  + V+A D L+    K       L+ L  +G SG R
Sbjct: 905 ILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFR 946



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 150/320 (46%), Gaps = 8/320 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L D L ++ + +   +LFD++     + N ++    Y  ++    K+     ++   
Sbjct: 673 YNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVT----YAAMVDGYCKSKNPTAAFQLL 728

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAK 317
           +++L      D   YNV++     +    KA ++++ M EKG  S    ++  +I    K
Sbjct: 729 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFAST--VSFNTLIEGYCK 786

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           SG+L  A  L +EM E+ F P+   + SL+D   KAG +  + ++++EMQ     P+A  
Sbjct: 787 SGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKT 846

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y SL+  Y   G +     L++EM   G  P+   + ++I+++ + G +  A  +  ++ 
Sbjct: 847 YTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL 906

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G   + + Y  L++      +    +KL N +  +G R GL T + +         +D
Sbjct: 907 VKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMD 966

Query: 498 VAAKILLEMKTMGYSVDVSA 517
            AA++L  M   G+  + ++
Sbjct: 967 EAAEVLRSMVKFGWVSNTTS 986



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 178/441 (40%), Gaps = 39/441 (8%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           +++++ S  K G L  A+ +F   K   FRPS     SL+  + K  +++   KV+  M 
Sbjct: 148 FDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGM- 206

Query: 368 GCGHR--PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
            C H+  P    Y ++I ++ K G +  A R+  EM   G  PN   + +II    ++  
Sbjct: 207 -CAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARL 265

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           LD A+ +   M   G +P   TY  L+       +   A  +   M   GL+P   TY A
Sbjct: 266 LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNA 325

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSG 544
           L+    ++  ++ A +I  EM   G   ++   + L+  + K G ++ AL  ++ M   G
Sbjct: 326 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 385

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
           +  ++     L E   +      A  LL+   +      ++ Y+ ++  L RC + Q   
Sbjct: 386 VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTN 445

Query: 605 HLM-----------AILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEG 653
            ++           A++  T   AHA       G  +  + +L  +RE   GI  ++   
Sbjct: 446 AILREMVMNGLKPNAVVYTTLMTAHA-----KEGRVEESRMILERMRE--QGILPDV--- 495

Query: 654 AARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
              +  N L+       ++  AR       E +L P A  +   I           G + 
Sbjct: 496 ---FCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFID----------GYSK 542

Query: 714 IAVMHTLHRFRKRMLYYGVVP 734
              M    R+   ML  GV+P
Sbjct: 543 AGEMEIADRYFNEMLSCGVLP 563



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 1/266 (0%)

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
           N  P+  IF  L+DS  K G L  ++ V++  +    RPS     SL+    K  K++  
Sbjct: 140 NGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELF 199

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            +++D M      P+   +T +I +H K G +  A  +  +M   G  P   TY+ ++  
Sbjct: 200 WKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGG 259

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +  +D A++L  SM   GL P L TY  L+      K    A  +LLEM  +G   +
Sbjct: 260 LCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPE 319

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            ++ + ++  +++ G ++ A R    M + GI  N  I   L     K    E A  +++
Sbjct: 320 PITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQ 379

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQD 599
             +E   + D   Y+ ++    R Q+
Sbjct: 380 EMMEKGVEPDSQTYSLLIEGHCRGQN 405



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/280 (19%), Positives = 121/280 (43%), Gaps = 5/280 (1%)

Query: 194  VPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
            VP D   Y ++ +   +   F+  L LF EM+    + G +   ++N +I+   K+ KL+
Sbjct: 736  VPPDAFIYNVILNFCCKEEKFEKALDLFQEML----EKGFASTVSFNTLIEGYCKSGKLQ 791

Query: 253  MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
             +    +++++     +  +Y  L+      G+  +A  ++  M++        TY  ++
Sbjct: 792  EANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLL 851

Query: 313  PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
                  G +     LF+EM  +   P    +  ++D+  + G +  + K+  E+   G  
Sbjct: 852  HGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMP 911

Query: 373  PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
             S   Y +LI++  K  +    L+L +E+  +GFR      ++I      +G +D A  +
Sbjct: 912  MSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEV 971

Query: 433  FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
               M + G++   ++   L++ + +    + +  L   M 
Sbjct: 972  LRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQMA 1011


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 190/392 (48%), Gaps = 5/392 (1%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK-ADKLEMSYCCFKK 260
           + F VL E+   D    LFD+M++      IS+ S  N  I +L++  D ++++   F +
Sbjct: 187 IFFQVLVEAGMLDEARKLFDKMLNYGLL--ISVDSC-NLFISHLSEDLDGIKIALKVFVE 243

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
             +     +T SYN++       G   +A ++   ME   C  D  +Y  +I    + G 
Sbjct: 244 FPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGE 303

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L   +KL +EM+ +  +P+   +  ++  + K G++  + +V  EM   G  P   +Y +
Sbjct: 304 LQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTT 363

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI+ + K G + +A RL+DEM+     P+F  +T +I    ++G++  A  +F +M    
Sbjct: 364 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY+ L++ +   G++  A  L+N M   GL P + TYTAL   L K   VD A 
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTAN 483

Query: 501 KILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++L EM   G  +++   + L+  + K G++D A++ ++ M  +G   +      L ++ 
Sbjct: 484 ELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 543

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            K+     A  LL   ++   +  +V +  ++
Sbjct: 544 CKSREMVRAHELLRQMLDRELQPTVVTFNVLM 575



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 129/274 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN VI  L K  K+  +    ++++      D   Y  L+  F   G    A+ +++ M
Sbjct: 325 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 384

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +K + S D  TY  +I  L ++GR+  A KLF EM  +   P    + +L+D   K G++
Sbjct: 385 QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKM 444

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++ +M   G  P+   Y +L +   K G++DTA  L  EM   G   N   +  +
Sbjct: 445 KEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 504

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K+G +D A+ +  DME AGF P   TY+ L++ +  S ++  A +L   M    L
Sbjct: 505 VNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDREL 564

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           +P + T+  L+       +++   K+L  M   G
Sbjct: 565 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKG 598



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 5/329 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEM 253
           P    Y  L D   +  +      LFDEM     K  IS  F  Y  VI  L +  ++  
Sbjct: 356 PDGVIYTTLIDGFCKLGNVSSAYRLFDEM----QKRKISPDFITYTAVICGLCQTGRVME 411

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F +++    + D  +Y  L+  +  +G   +AF ++  M +   + +  TY  +  
Sbjct: 412 ADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALAD 471

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K G +D A +L  EM  +    +   + SLV+ + KAG +D ++K+  +M+  G  P
Sbjct: 472 GLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHP 531

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
            A  Y +L+++Y K+ ++  A  L  +M     +P    F +++     SG L+    + 
Sbjct: 532 DAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLL 591

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G +P  +TY+ L++ +     + +  ++Y  M + G+ P  +TY  L+    K 
Sbjct: 592 KWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKA 651

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           + +  A  +  +M   G+++ VS+ + L+
Sbjct: 652 RNMKEAWFLHRDMVGKGFNLTVSSYNALI 680



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 109/269 (40%), Gaps = 1/269 (0%)

Query: 215 GMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           G +   +E++H+  + G+ L    YN ++  L KA  ++ +    K +  +    D  +Y
Sbjct: 477 GEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTY 536

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
             LM  +       +A E+   M   E      T+ +++     SG L+   KL + M E
Sbjct: 537 TTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLE 596

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           +   P+   + SL+        +  + ++Y  M   G  P    Y  LI+ + KA  +  
Sbjct: 597 KGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKE 656

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  L  +M   GF      +  +I+   K  K   A  +F  M R G +     Y+   +
Sbjct: 657 AWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFAD 716

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           ++   G+++  ++L +      L   + T
Sbjct: 717 INYDEGKMELTLELCDEAIEKCLVGDIQT 745



 Score = 42.4 bits (98), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 14/238 (5%)

Query: 163 KMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDE 222
           K  +I QA+K++ D + +            + P    Y  L D   +SR+      L  +
Sbjct: 510 KAGNIDQAVKLMKDMEVA-----------GFHPDAVTYTTLMDAYCKSREMVRAHELLRQ 558

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           M+    +  +  F   N ++     +  LE      K +L+     +  +YN L+  +  
Sbjct: 559 MLDRELQPTVVTF---NVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCI 615

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           +       EIY  M       DG+TY ++I    K+  +  A  L ++M  + F  + + 
Sbjct: 616 RNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSS 675

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
           + +L+    K  +   + +++ +M+  G      +Y    +     GK++  L L DE
Sbjct: 676 YNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDE 733


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 212/464 (45%), Gaps = 23/464 (4%)

Query: 111 SVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKL--QFVPKMVHIT 168
           +V PG D          P  + S VA+ V  V   +  P + + LD L     P++V   
Sbjct: 81  TVVPGTDGD-------GPGSDVSEVAERVCRVVSSQPEPRIASALDALGVNMSPELV--A 131

Query: 169 QALKVINDSDT-SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
           + L+ ++++   +L+ FRWA+RQ  +    E +  L + L + + F  + SL + M    
Sbjct: 132 EVLRNLSNAGILALAFFRWAERQQGFRYTAESFHNLIEALGKIKQFRLVWSLVEAM---- 187

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
              G+     +  +++  A+A K++ +   F+K+     K D   YN L+ +        
Sbjct: 188 RCRGLLSKDTFRLIVRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVK 247

Query: 288 KAFEIYESMEK-GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
           KA  I++ M++ G    D  TY +++        L     ++QEM +   +P    + +L
Sbjct: 248 KAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTL 307

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           + S  K+G+ D ++KV+ EM+  G  PS  +Y  LI       +LD AL+ ++  + +GF
Sbjct: 308 ISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGF 367

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
                    ++ ++ +S K   A  +  +M + G  P   TY  +L+    S +++ A  
Sbjct: 368 PMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYN 427

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYI 525
           ++  M   G  P L+TYT ++ +    + VD+A K+  +MK  G    +   S ++    
Sbjct: 428 VFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLC 487

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            +  ++ A  + + M   GIR       QLF S +K AL E  +
Sbjct: 488 FENRLEEACVYFQEMLDKGIRPPG----QLF-SNLKEALIEGGR 526



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 143/312 (45%), Gaps = 6/312 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG--ISLFSAYNRVIQYLAKADKLEMSYCC 257
           Y  L DVL++S+      ++F EM     +NG  +     Y  +++       L M    
Sbjct: 233 YNWLIDVLSKSKQVKKAHAIFKEM----KRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSV 288

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           ++++LD+  K D  +Y  L++ F   G   +A +++  ME   C      Y ++I  L  
Sbjct: 289 YQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGS 348

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
             RLD A+K F+  K   F        ++V +  ++ +   + K+  EM+  G  P+A  
Sbjct: 349 EERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNART 408

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  +++   K+ K++ A  ++  M + G  P    +TM++     + ++D+A+ ++  M+
Sbjct: 409 YDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMK 468

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G LP    +S L+       +++ A   +  M   G+RP    ++ L   L +   + 
Sbjct: 469 EKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALIEGGRIS 528

Query: 498 VAAKILLEMKTM 509
           +A  + L++ T+
Sbjct: 529 LAQDMALKLDTL 540


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 181/393 (46%), Gaps = 5/393 (1%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++L  + +E+R  + +  L  +M+ D   +      +Y  VI    K   L+ +Y  + +
Sbjct: 167 ILLKGLCDENRSQEALELL--QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +LD     +  +YN ++          KA E+  SM K     +  TY  ++     SG+
Sbjct: 225 MLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
              AI   ++M      P    + SL+D + K GR   + K++  M   G +P    Y +
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++ YA  G L     L D M   G  PN  +F+++I ++AK GK+D AM +F+ M + G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY  ++ +   SG+V+ AM+ +  M    L PG   Y +L+  L      D A 
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES- 558
           +++LEM   G  +D +  + ++  + K+G V  + +    M   G++ N      L +  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGY 524

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           C+   + E+ K LL + V    K D V Y +++
Sbjct: 525 CLAGKMDEATK-LLASMVSVGMKPDCVTYNTLI 556



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 177/382 (46%), Gaps = 11/382 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++ YL K  +   +   F  +     K +  +Y  L+  +  KG   +   + + M
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     +   + ++I + AK G++D A+ +F +M+++   P    + +++  + K+GR+
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +M+ + +M      P   +Y SLI S     K D A  L  EM   G   +   F  I
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+SH K G++  +  +F  M R G  P   TYS L++ +  +G++D A KL  SM S G+
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
           +P   TY  L+    K   ++ A  +  EM++ G S D+   ++++  +       A + 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 537 LRFMG--SSG----IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           L ++G   SG    + T N I+  L     KN L + A  + +    +  +++   +  +
Sbjct: 606 L-YVGITESGTQLELSTYNIILHGL----CKNNLTDEALRMFQNLCLTDLQLETRTFNIM 660

Query: 591 LAHLVRCQDEQNERHLMAILSA 612
           +  L++       + L A LSA
Sbjct: 661 IGALLKVGRNDEAKDLFAALSA 682



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 147/327 (44%), Gaps = 7/327 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYES 295
            Y  VI  L K+ ++E +   F++++D         YN L+          KA E I E 
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +++G C LD   +  +I S  K GR+  + KLF  M     +P+   +++L+D    AG+
Sbjct: 471 LDRGIC-LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGK 529

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D + K+   M   G +P    Y +LI  Y K  +++ AL L+ EM  +G  P+   + +
Sbjct: 530 MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I++   ++ +   A  ++  +  +G     STY+ +L     +   D A++++ ++    
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHAL 534
           L+    T+  ++  L K    D A  +   +   G   DV    ++    I+ G ++   
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 709

Query: 535 RWLRFMGSSGIRTN----NFIVRQLFE 557
                M  +G   N    N IVR+L +
Sbjct: 710 DLFLSMEENGCTANSRMLNSIVRKLLQ 736



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 132/353 (37%), Gaps = 42/353 (11%)

Query: 286 PYKAFEIYESMEKG---ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +    E + +  TY ++I S   +GRLD        + ++ FR     
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIA 128

Query: 343 FASLVDSMGKAGRLDTSMKVY---MEMQGC------------------------------ 369
           F  L+  +    R   +M +    M   GC                              
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188

Query: 370 -----GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
                   P    Y ++I  + K G LD A   + EM   G  PN   +  II +  K+ 
Sbjct: 189 PDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQ 248

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
            +D AM + T M + G +P   TY+ ++  + SSGQ   A+     M S G+ P + TY 
Sbjct: 249 AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSS 543
           +L+  L K      A K+   M   G   +++    +L  Y   G++      L  M  +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           GI  N+++   L  +  K    + A  +     +     D V Y +V+  L +
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 150/384 (39%), Gaps = 38/384 (9%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    Y  +  +L +S   +  +  F++M+ +    G  +   YN +I  L   
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV---YNSLIHSLCIF 457

Query: 249 DK-----------LEMSYCC----FKKVLDSDCK----IDTQ----------------SY 273
           DK           L+   C     F  ++DS CK    I+++                +Y
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITY 517

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + L+  +   G   +A ++  SM       D  TY  +I    K  R++ A+ LF+EM+ 
Sbjct: 518 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES 577

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    +  ++  + +  R   + ++Y+ +   G +     Y  ++    K    D 
Sbjct: 578 SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDE 637

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           ALR++  + +   +     F ++I +  K G+ D A  +F  +   G +P   TYS + E
Sbjct: 638 ALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G ++    L+ SM   G         +++  L +R  +  A   L  +    +S+
Sbjct: 698 NLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSL 757

Query: 514 DVSASDVLMVYIKDGSVDHALRWL 537
           + S + + +  +  G      R+L
Sbjct: 758 EASTASLFLDLLSGGKYQEYHRFL 781


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 126/547 (23%), Positives = 236/547 (43%), Gaps = 22/547 (4%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           L D      D D +L + D MV  S    I+L + YN +I  L K  K+E +    K ++
Sbjct: 51  LIDGFMREGDIDEVLRIKDVMV--SCGIPINLIT-YNVLIHGLCKFGKMEKAAEILKGMI 107

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
              CK +++++ +L+  +  +    +A E+ + MEK        +Y  MI  L     L 
Sbjct: 108 TLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLS 167

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A KL ++M     +P+  ++++L+      GR++ + ++   M   G  P    Y ++I
Sbjct: 168 LANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAII 227

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
              +KAGK++ A     E++  G +P+   F   I  ++K+GK+  A   F +M   G +
Sbjct: 228 SCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM 287

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P    Y+ L+  H  +G +  A+ ++  + + G+ P + T +A +  L K   V  A K+
Sbjct: 288 PNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 347

Query: 503 LLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             E+K  G   DV + S ++  + K G V+ A      M   GI  N FI   L +   K
Sbjct: 348 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 407

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
           +   + A+ L +   E   + D V Y++++    + ++      L   + +   + H+F+
Sbjct: 408 SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFV 467

Query: 622 -CGLFTG--PEQRKQPVLSFVREFFHGIDYELEEG-AARYFVNVLLNYLVLMGQINRARC 677
              L  G   E   +  ++  RE        L++G A     N L++      +I  A  
Sbjct: 468 YNALVHGCCKEGDMEKAMNLFREM-------LQKGFATTLSFNTLIDGYCKSCKIQEASQ 520

Query: 678 VWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMH-------TLHRFRKRMLYY 730
           +++     ++ P  + +   I W      +     L   M        T+    ++M+  
Sbjct: 521 LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAK 580

Query: 731 GVVPRRI 737
           GV P  +
Sbjct: 581 GVKPDEV 587



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 179/408 (43%), Gaps = 4/408 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    + +L +      +    L L DEM     +N +    +Y  +I  L     L ++
Sbjct: 113 PNSRTFCLLIEGYCREHNMGRALELLDEM---EKRNLVPSAVSYGAMINGLCHCKDLSLA 169

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               +K+  S  K +   Y+ L+  + ++G   +A  + + M     + D   Y  +I  
Sbjct: 170 NKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISC 229

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L+K+G+++ A     E++ R  +P    F + +    K G++  + K + EM   G  P+
Sbjct: 230 LSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 289

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
            P+Y  LI  + KAG L  AL ++  +   G  P+    +  I    K+G++  A+ +F+
Sbjct: 290 NPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS 349

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +++  G +P   TYS L+      G+V+ A +L++ M   G+ P +  Y AL+  L K  
Sbjct: 350 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 409

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +  A K+   M   G   D V+ S ++  Y K  +V  A      M S G++ ++F+  
Sbjct: 410 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 469

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
            L   C K    E A  L    ++      L   T +  +   C+ ++
Sbjct: 470 ALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 517



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 142/322 (44%), Gaps = 19/322 (5%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN L+      G   +A ++++ M +     D  TY  MI    KS  +  A  LF EM 
Sbjct: 398 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 457

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
            +  +P   ++ +LV    K G ++ +M ++ EM   G   +   + +LI+ Y K+ K+ 
Sbjct: 458 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQ 516

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL-----------------DIAMSIFTD 435
            A +L+ EM      P+   +T +I+ H K+GK+                 D   ++F  
Sbjct: 517 EASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEK 576

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M   G  P   TY  ++  H     +  A KL + +   G+    + +  L+T L KR+ 
Sbjct: 577 MVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRED 636

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           +  A+K+L EM  +G    ++A   L+  + + G +D A R    + S G+  +   +  
Sbjct: 637 LTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLID 696

Query: 555 LFESCMKNALYESAKPLLETYV 576
           L    + +   E A+ L++  V
Sbjct: 697 LVNGNLNDTDSEDARNLIKQLV 718



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 118/243 (48%), Gaps = 1/243 (0%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY ++   L ++ R++ A   F+EM++   +P +N  ++L+D   + G +D  +++   M
Sbjct: 12  TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVM 71

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
             CG   +   Y  LI    K GK++ A  +   M   G +PN   F ++IE + +   +
Sbjct: 72  VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNM 131

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A+ +  +ME+   +P+  +Y  ++        +  A KL   MT +GL+P +  Y+ L
Sbjct: 132 GRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTL 191

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGI 545
           +   A    ++ A ++L  M   G + D+   + ++  + K G ++ A  +L  +   G+
Sbjct: 192 IMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL 251

Query: 546 RTN 548
           + +
Sbjct: 252 KPD 254



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/501 (19%), Positives = 203/501 (40%), Gaps = 44/501 (8%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +   L +A ++  +   F+++  +  K D  + + L+  F+ +G   +   I + M
Sbjct: 12  TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVM 71

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                 ++  TY ++I  L K G+++ A ++ + M     +P+   F  L++   +   +
Sbjct: 72  VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNM 131

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++++  EM+     PSA  Y ++I        L  A +L ++M  +G +PN  +++ +
Sbjct: 132 GRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTL 191

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I  +A  G+++ A  +   M  +G  P    Y+ ++   + +G+++ A      +   GL
Sbjct: 192 IMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL 251

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P   T+ A +   +K   +  AAK   EM   G   +     VL+  + K G++  AL 
Sbjct: 252 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 311

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             R + + G+  +           +KN   + A  +     E     D+  Y+S+++   
Sbjct: 312 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF- 370

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
            C+  + E+           + H  +C                      GI       A 
Sbjct: 371 -CKQGEVEKAF---------ELHDEMC--------------------LKGI-------AP 393

Query: 656 RYFV-NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALI 714
             F+ N L++ L   G I RAR ++    E  L P ++ +   I       N++   +L 
Sbjct: 394 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 453

Query: 715 AVMHTL----HRFRKRMLYYG 731
             M +     H F    L +G
Sbjct: 454 HEMPSKGVQPHSFVYNALVHG 474



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 4/246 (1%)

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M E+   P+   +  +   + +A R++ +   + EMQ  G +P      +LI+ + + G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +D  LR+ D M   G   N   + ++I    K GK++ A  I   M   G  P   T+  
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L+E +     +  A++L + M    L P   +Y A++  L   K + +A K+L +M   G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 511 YSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA--LYES 567
              +V   S ++M Y  +G ++ A R L  M  SG+  + F    +  SC+  A  + E+
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAII-SCLSKAGKMEEA 239

Query: 568 AKPLLE 573
           +  LLE
Sbjct: 240 STYLLE 245



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/386 (19%), Positives = 162/386 (41%), Gaps = 32/386 (8%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           P+++T    +  + K   + +ALKV ++            ++   VP    Y  L     
Sbjct: 323 PDVQTCSAFIHGLLKNGRVQEALKVFSEL-----------KEKGLVPDVFTYSSLISGFC 371

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           +  + +    L DEM        I +   YN ++  L K+  ++ +   F  + +   + 
Sbjct: 372 KQGEVEKAFELHDEMCLKGIAPNIFI---YNALVDGLCKSGDIQRARKLFDGMPEKGLEP 428

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D+ +Y+ ++  +       +AF ++  M           Y  ++    K G ++ A+ LF
Sbjct: 429 DSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLF 488

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM ++ F  + + F +L+D   K+ ++  + +++ EM      P    Y ++I+ + KA
Sbjct: 489 REMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKA 547

Query: 389 GKL-----------------DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           GK+                 DT   L+++M   G +P+   + ++I +H K   L  A  
Sbjct: 548 GKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFK 607

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +  ++   G L   + +  L+        +  A KL + M   GL+P L+  + L+    
Sbjct: 608 LRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFH 667

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSA 517
           +   +D A ++   +K++G   D + 
Sbjct: 668 EAGKMDEATRVFEGVKSLGLVPDTTT 693


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 167/350 (47%), Gaps = 1/350 (0%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ML D     R  D  L++F  +   +         +Y  +I   +K  K++ +     
Sbjct: 335 YNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISN 394

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++ D   K + ++Y++++  ++  G    AF ++E M       DG TY +++ +  K+G
Sbjct: 395 EMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNG 454

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +++ A++L   M+  +  P+   +  ++D   K G L  + +   +M+  G RPSA  Y 
Sbjct: 455 QMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYN 514

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            ++   A+AG++D A  + DEM +AG  PN   +T +IE +A  G + +A   F  ++  
Sbjct: 515 VIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEV 574

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P    Y+ LL+    +G++ S + +   M +AG+      Y  LL   A+R  +  A
Sbjct: 575 GLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEA 634

Query: 500 AKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
           + I+ +M+  G + D+ S +  +    K G +  A   +  M   G++ N
Sbjct: 635 SDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPN 684



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/451 (21%), Positives = 185/451 (41%), Gaps = 44/451 (9%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAK 247
           R +   P    Y  L      ++D  G ++  +EM       G+S  +A Y+ +I    +
Sbjct: 219 RAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEM----EAEGVSPNAATYSVIISGYGR 274

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
              +E +   F++ L  +   +   YN ++  +   G   +A  I  +ME+         
Sbjct: 275 LGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGL 334

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKER---NFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
           Y +++        +D  + +F+ +K R      P+   +  L++   K G++D ++++  
Sbjct: 335 YNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISN 394

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN--------------- 409
           EM+  G + +   Y  +I+ Y + G    A  ++++M  AG +P+               
Sbjct: 395 EMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNG 454

Query: 410 --------------------FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
                                  +T+II+   K G L +A     DM+ AGF P+ +TY+
Sbjct: 455 QMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYN 514

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            ++   A +GQ+D A  + + M  AG+ P   +YT L+   A    + +A K    +K +
Sbjct: 515 VIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEV 574

Query: 510 GYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G   DV A + +L    K G +   L     M ++G+  NN+I   L +   +      A
Sbjct: 575 GLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEA 634

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
             +++         D+  YTS +    +  D
Sbjct: 635 SDIMQKMRHEGLTPDIHSYTSFINACCKAGD 665



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/341 (20%), Positives = 156/341 (45%), Gaps = 12/341 (3%)

Query: 259 KKVLDSDCKID---TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
           +KV+D+  +I     + + +L+  +  +G  + A   +ESM       +  +Y  +I + 
Sbjct: 178 RKVVDAFKRIKKPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAY 237

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
           A +  L  AI   +EM+     P+   ++ ++   G+ G ++ + + +          + 
Sbjct: 238 AVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHND 297

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
            +Y ++I +Y KAG ++ A  +   M   G     GL+ M+++ +     +D  +++F  
Sbjct: 298 VIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRR 357

Query: 436 ME---RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           ++     G  PT  +Y CL+ +++  G++D A+++ N M   G++    TY+ ++    +
Sbjct: 358 LKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQ 417

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG----IRT 547
                 A  +  +M   G   D    ++LM  + K+G ++ AL  L  M S      +RT
Sbjct: 418 LGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRT 477

Query: 548 NNFIVRQLFESCMKNALYESAKPL-LETYVESAAKVDLVLY 587
              I+    +       +E+ + + +  +  SAA  +++++
Sbjct: 478 YTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMH 518



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 128/296 (43%), Gaps = 4/296 (1%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           + L++    K G   +A   F+ M+     P+ + + +L+ +   A  L  ++    EM+
Sbjct: 195 HTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEME 254

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P+A  Y  +I  Y + G ++ A R +       +  N  ++  II ++ K+G ++
Sbjct: 255 AEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNME 314

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM---TSAGLRPGLSTYT 484
            A +I T ME  G   T   Y+ L++ +     VD  + ++  +   T  GL P + +Y 
Sbjct: 315 RAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYG 374

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSS 543
            L+ L +K   +D A +I  EM+  G   +    S ++  Y++ G   +A      M ++
Sbjct: 375 CLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNA 434

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           GI+ +      L  +  KN     A  LL           L  YT ++   ++  D
Sbjct: 435 GIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGD 490


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/464 (25%), Positives = 200/464 (43%), Gaps = 59/464 (12%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L   L+ S      L+LF+EM     +  +     Y  +I  L K +K++ +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVH---TYTVLIDGLCKENKMDEA 353

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                ++ +        +YN L+  +  +G+   AFEI + ME   C  +  TY  +I  
Sbjct: 354 RKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICG 413

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K  ++  A+ L  +M ER   PS   + SL+    K   L+++ ++   M   G  P 
Sbjct: 414 LCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPD 473

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y   I++  K G+++ A  L+D ++  G + N  ++T +I+ + K GK+D+A S+  
Sbjct: 474 QWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLE 533

Query: 435 DMERAGFLPTPSTYSCLLE--------MHASS---------------------------G 459
            M     LP   TY+ L+E          ASS                           G
Sbjct: 534 RMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDG 593

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
             D A+K++N M S G +P + TYTA L     + +++    ++ +M   G   D+    
Sbjct: 594 AFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYT 653

Query: 520 VLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF-----ESCMK------------ 561
           VL+  Y + G    A  +L+ M  +G + + +IV  L      E+ MK            
Sbjct: 654 VLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVS 713

Query: 562 NAL-YESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
           N L YE A  L E  VE    +D+ +Y +++A    CQ E+ E 
Sbjct: 714 NTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGF--CQQERLEE 755



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 168/396 (42%), Gaps = 36/396 (9%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L +A ++  +   F  + + +C    ++Y VL+      G   +A  ++  M
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++  C  +  TY ++I  L K  ++D A K+  EM E+   PS   + +L+D   K G +
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385

Query: 357 DTSMKV--YMEMQGCG-------------------HR--------------PSAPMYVSL 381
           D + ++   ME   CG                   H+              PS   Y SL
Sbjct: 386 DDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSL 445

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I    K   L++A RL   M   G  P+   +++ I++  K G+++ A ++F  ++  G 
Sbjct: 446 IHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGV 505

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
                 Y+ L++ +   G++D A  L   M +    P   TY  L+  L K K +  A+ 
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           ++ +M TMG    V    +L+   +KDG+ DHAL+    M S G + +         +  
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYF 625

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              + E    ++    E     DLV YT ++    R
Sbjct: 626 SQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661



 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 150/336 (44%), Gaps = 9/336 (2%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C+ +  SY  L+      G   +A +++  M +  C     TY ++I +L+ SGR   A+
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL 319

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            LF EMKE+   P+ + +  L+D + K  ++D + K+  EM   G  PS   Y +LI+ Y
Sbjct: 320 NLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGY 379

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K G +D A  + D M      PN   +  +I    K  K+  AM++   M      P+ 
Sbjct: 380 CKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSL 439

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ L+        ++SA +L + M   GL P   TY+  +  L K   V+ A  +   
Sbjct: 440 ITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDS 499

Query: 506 MKTMGYSVDVSASDVLMV-----YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +K  G    V A++V+       Y K G +D A   L  M +     N++    L E   
Sbjct: 500 VKAKG----VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLC 555

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           K    + A  L+   +    K  +V YT ++  +++
Sbjct: 556 KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLK 591



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 124/532 (23%), Positives = 216/532 (40%), Gaps = 64/532 (12%)

Query: 136 AKIVEVVNR--WKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWY 193
           A+++ +++R  W+  P L   L  L   P   H++       D  T+LS F W   +  +
Sbjct: 42  AQLLSILSRPNWQKHPSLRKLLPSL--TPS--HVSSLFAFNLDPQTALSFFNWIALRPGF 97

Query: 194 VPGDECYVMLFDVLNESR--------------------DFDGMLSLFDEMVHDSSKNGIS 233
                 Y  + ++L  +R                    D   +L +F +M  D       
Sbjct: 98  KHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGEFKFKP 157

Query: 234 LFSAYNRVIQYLAK---ADKLEMSYC------------CFKKVLDSDCKI---------- 268
               YN ++  L+K    D+++  Y              F  +++  CKI          
Sbjct: 158 TLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYA 217

Query: 269 ----------DTQSYNVLMTLFL-NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
                     DT +Y  L+     NKG+   A+E++  M +  C  +  +Y  +I  L +
Sbjct: 218 SKIVQAGLHPDTFTYTSLILGHCRNKGVD-NAYEVFLIMPQKGCQRNEVSYTNLIHGLCE 276

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           +GR++ A+KLF +M E N  P+   +  L+ ++  +GR   ++ ++ EM+  G  P+   
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  LI+   K  K+D A ++  EM   G  P+   +  +I+ + K G +D A  I   ME
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
                P   TY+ L+       +V  AM L N M    L P L TY +L+    K   ++
Sbjct: 397 SNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLE 456

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A ++L  M   G   D     V +    K+G V+ A      + + G++ N  I   L 
Sbjct: 457 SAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
           +   K    + A  LLE  +  A   +   Y  ++  L + +  +    L+A
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVA 568



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 168/404 (41%), Gaps = 22/404 (5%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L   L + R     ++L ++M+    K   SL + YN +I    K + LE +
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLE--RKLSPSLIT-YNSLIHGQCKVNDLESA 458

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           Y     + ++    D  +Y+V +     +G   +A  +++S++      +   Y  +I  
Sbjct: 459 YRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K G++D A  L + M      P+   +  L++ + K  ++  +  +  +M   G +P+
Sbjct: 519 YCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPT 578

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI    K G  D AL++++ M   G++P+   +T  + ++   G L+    +  
Sbjct: 579 VVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIA 638

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G LP   TY+ L++ +A  G    A      M   G +P L   + L+  L+   
Sbjct: 639 KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHEN 698

Query: 495 LV------------------DVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALR 535
            +                  ++A K+  +M   G ++DVS    L+  + +   ++ A  
Sbjct: 699 RMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQG 758

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
            +  M   G+  +  I   L + C K  +Y  A  L++  VE+ 
Sbjct: 759 LVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENG 802



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 129/311 (41%), Gaps = 21/311 (6%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L   + +   FD  L +F+ MV    +  +  ++A+  +  Y ++   LE       
Sbjct: 582 YTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF--LHAYFSQG-MLEEVDDVIA 638

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+ +     D  +Y VL+  +   GL ++AF+  + M    C        ++I +L+   
Sbjct: 639 KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHEN 698

Query: 320 RL------------------DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           R+                  + A+KLF++M E       +I+ +L+    +  RL+ +  
Sbjct: 699 RMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQG 758

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           +   M+  G  PS  +Y SL++   K G    A+RL D M   G  P    + +++    
Sbjct: 759 LVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLY 818

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
             G  + A ++F  +   G+      +  L++       VD   +L + M   G +P   
Sbjct: 819 IEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPL 878

Query: 482 TYTALLTLLAK 492
           TY+ L+  L +
Sbjct: 879 TYSLLIEGLER 889


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 186/402 (46%), Gaps = 7/402 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADKL 251
           + G + YV L   L    D    +  F+  V    K      L SA   +I  L +  K+
Sbjct: 37  LSGSDDYVFLLRELGNRGDCKKAICCFEFAVKRERKKNEQGKLASA---MISTLGRLGKV 93

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           EM+   FK  L         +++ +++ +   G   +A +I+ SM+      +  TY  +
Sbjct: 94  EMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAV 153

Query: 312 IPSLAKSG-RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           I +  K G      +++F EM     +P    F SL+    K G  + +  +  EM   G
Sbjct: 154 IDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRG 213

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
                  Y +L+++  K G+LD A  +  EM      PN   ++ +I+ +AK+G+LD A 
Sbjct: 214 IDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDAR 273

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           ++F +M+  G      +Y+ LL ++A  G+ + AM +   M ++G+R  + TY ALL   
Sbjct: 274 NLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGY 333

Query: 491 AKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549
            K+   DV  K+  EMK    S + ++ S ++ VY K G    A+   R    +G++ + 
Sbjct: 334 GKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADV 393

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +   L ++  KN L ESA  LL+   +   + ++V Y S++
Sbjct: 394 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSII 435



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 158/337 (46%), Gaps = 9/337 (2%)

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-AFE 291
           ++ SAY R   Y  +A K+      F  + D   K +  +YN ++      G+ +K   E
Sbjct: 117 AIISAYGRS-GYCNEAIKI------FYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLE 169

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           I++ M +     D  T+  ++   +K G  +AA  L  EM  R        + +L+D++ 
Sbjct: 170 IFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVC 229

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K G+LD + ++  EM      P+   Y ++I+ YAKAG+LD A  L++EM+  G   +  
Sbjct: 230 KGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRV 289

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +  ++  +AK G+ + AM +  +ME +G      TY+ LL  +    + D   K++  M
Sbjct: 290 SYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEM 349

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSV 530
            +  + P L TY+ L+ + +K  L   A  +  E K  G   DV     L+    K+G V
Sbjct: 350 KARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLV 409

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
           + A+  L  M   GIR N      + ++  + A  ES
Sbjct: 410 ESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTES 446



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 2/292 (0%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG-RLDTSMKVYME 365
            +  +I +  +SG  + AIK+F  MK+   +P+   + +++D+ GK G      ++++ E
Sbjct: 114 AFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDE 173

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G +P    + SL+   +K G  + A  L  EM   G   +   +  ++++  K G+
Sbjct: 174 MLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQ 233

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           LD+A  I ++M     LP   TYS +++ +A +G++D A  L+N M   G+     +Y  
Sbjct: 234 LDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNT 293

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSG 544
           LL++ AK    + A  +  EM+  G   DV   + L+  Y K    D   +    M +  
Sbjct: 294 LLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARH 353

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  N      L +   K  LY  A  +   + ++  K D+VLY++++  L +
Sbjct: 354 VSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCK 405



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 153/355 (43%), Gaps = 36/355 (10%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D + +    D    +  EM    +KN +     Y+ +I   AKA +L+ +   F 
Sbjct: 221 YNTLLDAVCKGGQLDMAFEIMSEM---PAKNILPNVVTYSTMIDGYAKAGRLDDARNLFN 277

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++      +D  SYN L++++   G   +A ++   ME      D  TY  ++    K  
Sbjct: 278 EMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQY 337

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           + D   K+F+EMK R+  P+   +++L+D   K G    +M V+ E +  G +    +Y 
Sbjct: 338 KYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYS 397

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI++  K G +++A+ L DEM   G RPN   +  II++  +    +   S+  D  + 
Sbjct: 398 ALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTE---SVVDDAGQT 454

Query: 440 GFLPTPSTYSCLLEMHASS----------------------GQVDSA--------MKLYN 469
             L   S  S  +E    S                      GQ  ++        + +++
Sbjct: 455 SELQIDSLSSSAVEKATKSLVADREDNRIIKIFGQLAAEKAGQAKNSGGQEMMCILGVFH 514

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
            M    ++P + T++A+L   ++    + A+ +L E++     V   A  +LM Y
Sbjct: 515 KMHELEIKPNVVTFSAILNACSRCNSFEEASMLLEELRLFDNQVYGVAHGLLMGY 569


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 200/431 (46%), Gaps = 17/431 (3%)

Query: 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI 232
           V++ +D  +    W+ R    VPG   +  LF VL +       L + +E +   SK  +
Sbjct: 37  VLSKADCDVFDVLWSTRNVC-VPGFGVFDALFSVLID-------LGMLEEAIQCFSK--M 86

Query: 233 SLFSAY------NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
             F  +      N ++   AK  K +     FK ++ +  +    +YN+++     +G  
Sbjct: 87  KRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDV 146

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
             A  ++E M+      D  TY  MI    K GRLD  +  F+EMK+    P    + +L
Sbjct: 147 EAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNAL 206

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           ++   K G+L   ++ Y EM+G G +P+   Y +L++++ K G +  A++ + +MR  G 
Sbjct: 207 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 266

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            PN   +T +I+++ K G L  A  +  +M + G      TY+ L++    + ++  A +
Sbjct: 267 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEE 326

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK 526
           L+  M +AG+ P L++Y AL+    K K +D A ++L E+K  G   D+      +  + 
Sbjct: 327 LFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLC 386

Query: 527 D-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
               ++ A   +  M   GI+ N+ I   L ++  K+        LL+   E   +V +V
Sbjct: 387 SLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVV 446

Query: 586 LYTSVLAHLVR 596
            +  ++  L +
Sbjct: 447 TFCVLIDGLCK 457



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 98/460 (21%), Positives = 178/460 (38%), Gaps = 40/460 (8%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D + +  D +    LF+EM     +  +     YN +I    K  +L+ + C F+
Sbjct: 133 YNIMIDCMCKEGDVEAARGLFEEM---KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFE 189

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++ D  C+ D  +YN L+  F   G      E Y  M+      +  +Y  ++ +  K G
Sbjct: 190 EMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEG 249

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG------------------------- 354
            +  AIK + +M+     P+   + SL+D+  K G                         
Sbjct: 250 MMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYT 309

Query: 355 ----------RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
                     R+  + +++ +M   G  P+   Y +LI  + KA  +D AL L +E++  
Sbjct: 310 ALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGR 369

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G +P+  L+   I       K++ A  +  +M+  G       Y+ L++ +  SG     
Sbjct: 370 GIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEG 429

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT-MGYSVDVSASDVLMV 523
           + L + M    +   + T+  L+  L K KLV  A      +    G   + +    ++ 
Sbjct: 430 LHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMID 489

Query: 524 YI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            + KD  V+ A      M   G+  +      L +   K      A  L +   E   K+
Sbjct: 490 GLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKL 549

Query: 583 DLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLC 622
           DL+ YTS++  L  C   Q  R  +  +          LC
Sbjct: 550 DLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLC 589



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 121/275 (44%), Gaps = 4/275 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y  L     ++++ D  L L +E+     K  + L+  +   I  L   +K+E 
Sbjct: 337 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF---IWGLCSLEKIEA 393

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++ +   K ++  Y  LM  +   G P +   + + M++ +  +   T+ ++I 
Sbjct: 394 AKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLID 453

Query: 314 SLAKSGRLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            L K+  +  A+  F  +  +   + +  IF +++D + K  +++ +  ++ +M   G  
Sbjct: 454 GLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLV 513

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y SL++   K G +  AL L D+M   G + +   +T ++   +   +L  A S 
Sbjct: 514 PDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSF 573

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
             +M   G  P       +L+ H   G +D A++L
Sbjct: 574 LEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 608


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 184/397 (46%), Gaps = 23/397 (5%)

Query: 130 LNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS---DTSLSLFRW 186
           +N +  A+ +  V ++    +L  ++ +  FVP     ++ +  +  +   + +  LF+ 
Sbjct: 189 VNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQE 248

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
            K      P    Y +L D   ++   +    LF+EM        +  ++A   +I    
Sbjct: 249 MKMVG-VTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTA---LIHAYL 304

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306
           KA ++  +   F +++D+ C+ +  +Y  L+      G   KAFE+Y  +     S D  
Sbjct: 305 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 364

Query: 307 ----------------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
                           TY  ++  L K+ ++D A +L   M      P+  ++ +L+D  
Sbjct: 365 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 424

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            KAG++D++ +V+++M  CG+ PS   Y SLI+   K G+LD A+++  +M      PN 
Sbjct: 425 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 484

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +T +I+   + G+ + A+ + + ME  G  P   TY+ L++    +G++D ++ L+  
Sbjct: 485 VTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQ 544

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           M+  G  P   TY  L+  L    L+D A  +L EMK
Sbjct: 545 MSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 581



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 162/364 (44%), Gaps = 54/364 (14%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD    L  EM+    K  +   S Y++VI +L  A K+E ++  F+++       D  +
Sbjct: 204 FDKAFQLIKEMMR---KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 260

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y +L+  F   GL  +A  ++E M    CS    TY  +I +  K+ ++  A  +F  M 
Sbjct: 261 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 320

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC----------------------- 369
           +   RP+   + +LVD + KAG +  + +VY ++ G                        
Sbjct: 321 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 380

Query: 370 ----------------------------GHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
                                       G  P+  +Y +LI+ + KAGK+D+A  ++ +M
Sbjct: 381 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 440

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G+ P+   +T +I+   K G+LD+AM + + M +    P   TY+ +++     G+ 
Sbjct: 441 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 500

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           + A+KL + M   G  P + TYTAL+  L K   +D++  +  +M   G S +     VL
Sbjct: 501 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 560

Query: 522 MVYI 525
           + ++
Sbjct: 561 INHL 564



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 163/373 (43%), Gaps = 51/373 (13%)

Query: 172 KVINDSDTSLSLFRW-AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK- 229
           K+I  SD++ S F +  + +    P    Y  L D L ++   D    L D M+    + 
Sbjct: 353 KLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEP 412

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
           N I     Y+ +I    KA K++ +   F ++          +Y  L+      G    A
Sbjct: 413 NHI----VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLA 468

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            ++   M K  C+ +  TY  MI  L + G  + A+KL   M+E+   P+   + +L+D 
Sbjct: 469 MKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDG 528

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR------- 402
           +GKAG++D S+ ++ +M   G  P+   Y  LI     AG LD A  L  EM+       
Sbjct: 529 LGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKY 588

Query: 403 -------IAGFRPNF-------------------GLFTMIIESHAKSGKLDIAMSIFTDM 436
                  I GF  +F                    ++ M+I+  +K+G+L+IAM +  +M
Sbjct: 589 LQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEM 648

Query: 437 ERAGFLPTPST-------YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
                +  PS+       Y+ L++    + QV+ A +LY+ MT  G  P LS +  L+  
Sbjct: 649 -----MEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKG 703

Query: 490 LAKRKLVDVAAKI 502
           L + K  D A ++
Sbjct: 704 LVEVKKWDEALQL 716



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 176/408 (43%), Gaps = 25/408 (6%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A +IY  M    C L+          L   G+ D A +L +EM  + F P  + ++ ++ 
Sbjct: 172 AEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVIT 231

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
            +  A +++ +  ++ EM+  G  P    Y  LI+S+ KAG ++ A  L++EMR  G  P
Sbjct: 232 FLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSP 291

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
               +T +I ++ K+ ++  A  IF  M  AG  P   TY  L++    +G +  A ++Y
Sbjct: 292 TVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVY 351

Query: 469 NSMTSAG----------------LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +                    L P + TY AL+  L K   VD A ++L  M + G  
Sbjct: 352 AKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCE 411

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            +    D L+  + K G +D A      M   G   +      L +   K+   + A  +
Sbjct: 412 PNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 471

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL-CGLFTGPEQ 630
           L   ++ +   ++V YT+++  L R  + +    L++++       +      L  G  +
Sbjct: 472 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 531

Query: 631 RKQPVLSFVREFFHGIDYELEEGAARYFVN--VLLNYLVLMGQINRAR 676
             +  LS   + F  +     +G +  +V   VL+N+L   G +++AR
Sbjct: 532 AGKIDLSL--DLFTQMS---RKGCSPNYVTYRVLINHLCAAGLLDKAR 574



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 141/314 (44%), Gaps = 35/314 (11%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++  L KA K++ ++     +L S C+ +   Y+ L+  F   G    A E++  M 
Sbjct: 382 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMT 441

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K        TY  +I  + K GRLD A+K+  +M + +  P+   + +++D + + G  +
Sbjct: 442 KCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESE 501

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++K+   M+  G  P+   Y +LI+   KAGK+D +L L+ +M   G  PN+  + ++I
Sbjct: 502 KALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLI 561

Query: 418 ESHAKSGKLDIA---------------------------------MSIFTDMERAGFLPT 444
                +G LD A                                 + I  +ME  G +P 
Sbjct: 562 NHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPI 621

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSM--TSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
              Y  L++  + +G+++ AM+L+  M    + ++     Y +L+  L     V+ A ++
Sbjct: 622 APVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRL 681

Query: 503 LLEMKTMGYSVDVS 516
             EM   G+  ++S
Sbjct: 682 YSEMTRRGFVPELS 695



 Score = 95.9 bits (237), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 142/318 (44%), Gaps = 40/318 (12%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG-ISLFSAYNRVIQYLAKADKLEM 253
           P    Y  L D   ++   D    +F +M    +K G +     Y  +I  + K  +L++
Sbjct: 412 PNHIVYDALIDGFCKAGKIDSAQEVFLQM----TKCGYLPSVHTYTSLIDRMFKDGRLDL 467

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++L   C  +  +Y  ++      G   KA ++   ME+  CS +  TY  +I 
Sbjct: 468 AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALID 527

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD---------------- 357
            L K+G++D ++ LF +M  +   P++  +  L++ +  AG LD                
Sbjct: 528 GLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPK 587

Query: 358 -----------------TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
                             S+ +  EM+  G  P AP+Y  LI+ ++KAG+L+ A+ L  E
Sbjct: 588 YLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKE 647

Query: 401 MR--IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           M    +  + +  ++  +I++   + +++ A  ++++M R GF+P  S + CL++     
Sbjct: 648 MMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEV 707

Query: 459 GQVDSAMKLYNSMTSAGL 476
            + D A++L   +   G+
Sbjct: 708 KKWDEALQLCYGICHEGV 725



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 126/321 (39%), Gaps = 14/321 (4%)

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
           AD L+M       +   D K+DT     +++  +      +A      M    C  +  T
Sbjct: 27  ADALDM-------IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVT 79

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  ++    K  +L    ++   M      P+ ++F SLV S         + K+   M 
Sbjct: 80  YRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMT 139

Query: 368 GCGHRPSAPMYVSLIESYAKAGK------LDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
            CG  P   +Y   I S     K      LD A +++ EM  A    N            
Sbjct: 140 TCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLC 199

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
             GK D A  +  +M R GF+P  STYS ++     + +V+ A  L+  M   G+ P + 
Sbjct: 200 GVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 259

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFM 540
           TYT L+    K  L++ A  +  EM+++G S  V     L+  Y+K   V  A      M
Sbjct: 260 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 319

Query: 541 GSSGIRTNNFIVRQLFESCMK 561
             +G R N+     L +   K
Sbjct: 320 VDAGCRPNDVTYGALVDGLCK 340


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 167/371 (45%), Gaps = 1/371 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N VI +L K  +L  +   F ++    C  D  +YN L+  +   G   +  ++   M 
Sbjct: 203 FNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMR 262

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K  C+ D  TY  +I   +K GR++ A   F EMK +    +   F++ VD+  K G + 
Sbjct: 263 KSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQ 322

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +MK++ +M+  G  P+   Y SL++   KAG+LD A+ L DEM   G  PN   +T+++
Sbjct: 323 EAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMV 382

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K GK+  A ++ + MER G       Y+ L+  H  +   + A+ L N M + G+ 
Sbjct: 383 DGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGME 442

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
             +S Y  L+  L K + VD A  +L +M   G   + V  + ++    K G    A+  
Sbjct: 443 LDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVAL 502

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  +  SG + N      L +   K      A        E     ++  YT+++    +
Sbjct: 503 LHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCK 562

Query: 597 CQDEQNERHLM 607
                   HLM
Sbjct: 563 IGSLNKAMHLM 573



 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 171/412 (41%), Gaps = 36/412 (8%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    K   LE       ++  S C  D  +YN L+  F   G   KA+  +  M+
Sbjct: 238 YNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMK 297

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     +  T+   + +  K G +  A+KLF +M+ R   P+   + SLVD   KAGRLD
Sbjct: 298 RQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLD 357

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  EM   G  P+   Y  +++   K GK+  A  +   M   G + N  L+T +I
Sbjct: 358 DAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLI 417

Query: 418 ESH-----------------------------------AKSGKLDIAMSIFTDMERAGFL 442
             H                                    K  K+D A S+   M   G  
Sbjct: 418 HGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLR 477

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P    Y+ +++    +G+   A+ L + +  +G +P + TY AL+  L K   +  A   
Sbjct: 478 PNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISH 537

Query: 503 LLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             +M+ +G   +V A   L+  + K GS++ A+  +  M   G+  +  +   L +  MK
Sbjct: 538 FNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMK 597

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
            A  + A  L    +ES  ++DL  YT  ++        Q  R +++ +  T
Sbjct: 598 QANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGT 649



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 154/326 (47%), Gaps = 1/326 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++N+++     +G   +A  ++  M+   CS D  TY  +I    K G L+   +L  EM
Sbjct: 202 TFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEM 261

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           ++         + +L++   K GR++ +   + EM+  G   +   + + ++++ K G +
Sbjct: 262 RKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLV 321

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A++L+ +MR+ G  PN   +T +++   K+G+LD A+ +  +M   G +P   TY+ +
Sbjct: 322 QEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVM 381

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++     G+V  A  + + M   G++     YT L+         + A  +L +MK  G 
Sbjct: 382 VDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGM 441

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
            +DVS    L+    KD  VD A   L  M   G+R N  I   + ++  K      A  
Sbjct: 442 ELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVA 501

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           LL   ++S  + ++V Y +++  L +
Sbjct: 502 LLHKILDSGFQPNVVTYCALIDGLCK 527



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 152/346 (43%), Gaps = 4/346 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R    +P +  Y  L D   ++   D  + L DEMVH   +  +     Y  ++  L K 
Sbjct: 332 RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVH---QGLVPNVVTYTVMVDGLCKE 388

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K+  +      +     K +   Y  L+          +A ++   M+     LD S Y
Sbjct: 389 GKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLY 448

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I  L K  ++D A  L  +M     RP+  I+ +++D++ KAG+   ++ +  ++  
Sbjct: 449 GTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILD 508

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G +P+   Y +LI+   KAG +  A+  +++MR  G  PN   +T +I+   K G L+ 
Sbjct: 509 SGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNK 568

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           AM +  +M   G       Y+ L++ +     +  A  L   M  +GL+  L  YT  ++
Sbjct: 569 AMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFIS 628

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
                 ++  A  +L EM   G + D +  + L+  Y K G+++ A
Sbjct: 629 GFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEA 674



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 3/265 (1%)

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P+   F  ++D + K G L  +  +++ M+  G  P    Y SLI+ Y K G L+   +L
Sbjct: 198 PNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQL 257

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
             EMR +G   +   +  +I   +K G+++ A S F +M+R G +    T+S  ++    
Sbjct: 258 VSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCK 317

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G V  AMKL+  M   G+ P   TYT+L+    K   +D A  +L EM   G   +V  
Sbjct: 318 EGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVT 377

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
             V++  + K+G V  A   L  M   G++ N  +   L      N   E A  LL    
Sbjct: 378 YTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMK 437

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDEQ 601
               ++D+ LY +++  L  C+D++
Sbjct: 438 NKGMELDVSLYGTLIWGL--CKDQK 460



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 3/257 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L L ++M +   +  +SL   Y  +I  L K  K++ +     K+     + +T  Y  +
Sbjct: 430 LDLLNQMKNKGMELDVSL---YGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTI 486

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M      G   +A  +   +       +  TY  +I  L K+G +  AI  F +M+E   
Sbjct: 487 MDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGL 546

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   + +L+D   K G L+ +M +  EM   G      +Y SLI+ Y K   L  A  
Sbjct: 547 DPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFA 606

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +M  +G + +   +T  I        +  A  + ++M   G  P  + Y+CL+  + 
Sbjct: 607 LKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQ 666

Query: 457 SSGQVDSAMKLYNSMTS 473
             G ++ A  L N M S
Sbjct: 667 KLGNMEEASSLQNEMES 683



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 104/211 (49%), Gaps = 2/211 (0%)

Query: 301 CSLDGST--YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
           C L  +T  Y  ++ +L K+G+   A+ L  ++ +  F+P+   + +L+D + KAG +  
Sbjct: 474 CGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISE 533

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++  + +M+  G  P+   Y +LI+ + K G L+ A+ L +EM   G   +  ++T +I+
Sbjct: 534 AISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLID 593

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
            + K   L  A ++ T M  +G       Y+C +    +   +  A  + + M   G+ P
Sbjct: 594 GYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITP 653

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
             + Y  L+    K   ++ A+ +  EM+++
Sbjct: 654 DKTVYNCLIRKYQKLGNMEEASSLQNEMESV 684



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 125/289 (43%), Gaps = 9/289 (3%)

Query: 338 PSFNIFASLVDSM----GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           P  +   S+VD++       G LD +++    ++     P+      ++   A+  +   
Sbjct: 128 PRRSALPSVVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGL 187

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
             RL+D + +    PN   F ++I+   K G+L  A ++F  M+  G  P   TY+ L++
Sbjct: 188 VRRLFDLLPV----PNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLID 243

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +   G ++   +L + M  +G    + TY AL+   +K   ++ A     EMK  G   
Sbjct: 244 GYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVA 303

Query: 514 DV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           +V + S  +  + K+G V  A++    M   G+  N F    L +   K    + A  LL
Sbjct: 304 NVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLL 363

Query: 573 ETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
           +  V      ++V YT ++  L +        ++++++     KA+  L
Sbjct: 364 DEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELL 412



 Score = 46.2 bits (108), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 25/251 (9%)

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA-PMYV-SLIE 383
           +L   +     RP  ++ ASLVD + +A                G R SA P  V +L+ 
Sbjct: 97  RLLSRLLGAGHRP--HLAASLVDLLHRAA------------LALGPRRSALPSVVDTLLS 142

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
             A  G LD A+R    +R     PN      I+   A++ +  +   +F        LP
Sbjct: 143 LLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFD------LLP 196

Query: 444 TPS--TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P+  T++ +++     G++  A  L+  M + G  P + TY +L+    K   ++   +
Sbjct: 197 VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQ 256

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           ++ EM+  G + DV   + L+  + K G ++ A  +   M   G+  N        ++  
Sbjct: 257 LVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFC 316

Query: 561 KNALYESAKPL 571
           K  L + A  L
Sbjct: 317 KEGLVQEAMKL 327


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 191/402 (47%), Gaps = 9/402 (2%)

Query: 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS 228
           + L++      +L +FR+ +    Y   +   V +  +L      +G L L  E+    S
Sbjct: 2   KELEIRGARRQALQVFRFLQEHLEYELKEHNCVTIISILGR----EGKLGLAREIFEGMS 57

Query: 229 KNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG--L 285
           K G++    AY  ++   AK   L+ ++  F+ + +  C  +  +YN L+     +   L
Sbjct: 58  KAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAYRL 117

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           P     ++E M++     +  TY  M+ +       D A ++ +EMK  N  P+   + +
Sbjct: 118 P-DLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTT 176

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           +++S+G++GRLD +++++ EM+  G  P++  Y SL+++YA+ G+ + A+ L+  M   G
Sbjct: 177 MINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEG 236

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             P+   +  +I+   + G    A  +F +M+R G  P   TY+ +L+ ++   +   A 
Sbjct: 237 CIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRAR 296

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVY 524
            L  +M  AG  P L TY  LL    K      A +I  E+K  G+S + VS S ++ +Y
Sbjct: 297 DLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMY 356

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
            + G  + A R    M ++G   N      L  S   + +Y+
Sbjct: 357 GRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHGMYK 398



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 5/234 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVH-DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + + L  S   D  + LF+EM     S N  +    YN +++  A+  + E + C F
Sbjct: 174 YTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWT----YNSLLKAYAREGRYEKAMCLF 229

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             + D  C  D  +YN ++ +    GL  +A  ++  M++  C+ D  TY  M+ + +K 
Sbjct: 230 VGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKW 289

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
            R   A  L + MK     P    +  L+D+ GKAG    +M+++ E++  GH P+   +
Sbjct: 290 SRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSF 349

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
            +LI  Y + G  + A R W EMR  G  PN   +  ++ S++  G   +   I
Sbjct: 350 SALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHGMYKVLCCI 403



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 37/183 (20%)

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           II    + GKL +A  IF  M +AG  P+   Y+ LL  +A  G +  A  L+ +M   G
Sbjct: 36  IISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKG 95

Query: 476 LRPGLSTYTALLTLLAKR--KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHA 533
             P + TY  L+    KR  +L D+   +  EMK                          
Sbjct: 96  CSPNVLTYNTLINACTKRAYRLPDLVG-LFEEMK-------------------------- 128

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
                    +G++ N+     +  +C+  +L+++A  +L+         +++ YT+++  
Sbjct: 129 --------QAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINS 180

Query: 594 LVR 596
           L R
Sbjct: 181 LGR 183


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 179/403 (44%), Gaps = 18/403 (4%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKL 251
           P    + +L + L ++R  D  L +FD +      N + +      +N +I  L K  K 
Sbjct: 314 PSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKE 373

Query: 252 EMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           E      +++ + +  + +T +YN L+  F   G   +A E++  M +     +  T   
Sbjct: 374 EDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNT 433

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++  L K GR+  A++ F EMK +  + +   + +L+ +      ++ +M+ + EM   G
Sbjct: 434 LVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSG 493

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P A +Y SLI     AG+++ A  +  ++++AGF  +   + ++I    K  KL+   
Sbjct: 494 CSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVY 553

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            + T+ME  G  P   TY+ L+     +G   +A K+   M   GLRP + TY A++   
Sbjct: 554 ELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAY 613

Query: 491 AKRKLVDVAAKILLEM--------KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542
             +K VD   KI  EM         T+ Y++ + A        ++  VD A+  +  M  
Sbjct: 614 CSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDA------LCRNNDVDRAISLMEDMKV 667

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
             +R N      + +      +   A  L++  VE A + D +
Sbjct: 668 KRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYI 710



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 151/324 (46%), Gaps = 18/324 (5%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A+E+   + +   ++D ++   ++  L +   +    +L  EM++R  RPS   F  LV+
Sbjct: 265 AWEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVN 324

Query: 349 SMGKAGRLDTSMKVYMEMQG------CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
            + KA R+D +++V+  ++G       G  P   ++ +LI+   K GK +  L L +EM+
Sbjct: 325 HLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMK 384

Query: 403 IAGF-RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
           +    RPN   +  +I+   K+G  D A  +F  M   G  P   T + L++     G+V
Sbjct: 385 MGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRV 444

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
             A++ +N M   GL+   +TYTAL++       ++ A +   EM + G S D      L
Sbjct: 445 HRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSL 504

Query: 522 MV------YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           +        + D SV   +  L+  G S  R+   ++   F  C K  L E    LL   
Sbjct: 505 ISGLCIAGRMNDASV--VVSKLKLAGFSLDRSCYNVLISGF--CKKKKL-ERVYELLTEM 559

Query: 576 VESAAKVDLVLYTSVLAHLVRCQD 599
            E+  K D + Y +++++L +  D
Sbjct: 560 EETGVKPDTITYNTLISYLGKTGD 583



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 158/362 (43%), Gaps = 8/362 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +   L  +   +  LSL    K  +   P    Y  L D   ++ +FD    LF +M  +
Sbjct: 363 LIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEE 422

Query: 227 SSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
             + N I+L    N ++  L K  ++  +   F ++     K +  +Y  L++ F     
Sbjct: 423 GVQPNVITL----NTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNN 478

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +A + +E M    CS D   Y  +I  L  +GR++ A  +  ++K   F    + +  
Sbjct: 479 INRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNV 538

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+    K  +L+   ++  EM+  G +P    Y +LI    K G   TA ++ ++M   G
Sbjct: 539 LISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEG 598

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST--YSCLLEMHASSGQVDS 463
            RP+   +  II ++     +D  M IF +M     +P P+T  Y+ L++    +  VD 
Sbjct: 599 LRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVP-PNTVIYNILIDALCRNNDVDR 657

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523
           A+ L   M    +RP  +TY A+L  +  +K++  A +++  M       D    +VL  
Sbjct: 658 AISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTE 717

Query: 524 YI 525
           ++
Sbjct: 718 WL 719



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 126/276 (45%), Gaps = 4/276 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +  F+EM     K   + ++A   +I      + +  +  CF+++L S C  D   Y  L
Sbjct: 448 VEFFNEMKGKGLKGNAATYTA---LISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSL 504

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           ++     G    A  +   ++    SLD S Y ++I    K  +L+   +L  EM+E   
Sbjct: 505 ISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGV 564

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P    + +L+  +GK G   T+ KV  +M   G RPS   Y ++I +Y     +D  ++
Sbjct: 565 KPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMK 624

Query: 397 LWDEM-RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           ++ EM   +   PN  ++ ++I++  ++  +D A+S+  DM+     P  +TY+ +L+  
Sbjct: 625 IFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGV 684

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
                +  A +L + M     RP   T   L   L+
Sbjct: 685 RDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLS 720



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 1/193 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S YN +I    K  KLE  Y    ++ ++  K DT +YN L++     G    A ++ E 
Sbjct: 534 SCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEK 593

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAG 354
           M K        TY  +I +      +D  +K+F EM       P+  I+  L+D++ +  
Sbjct: 594 MIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNN 653

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            +D ++ +  +M+    RP+   Y ++++       L  A  L D M     RP++    
Sbjct: 654 DVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITME 713

Query: 415 MIIESHAKSGKLD 427
           ++ E  +  G+++
Sbjct: 714 VLTEWLSAVGEIE 726



 Score = 42.4 bits (98), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/195 (18%), Positives = 79/195 (40%), Gaps = 4/195 (2%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           CY +L     + +  + +  L  EM     K        YN +I YL K      +    
Sbjct: 535 CYNVLISGFCKKKKLERVYELLTEMEETGVKPDTI---TYNTLISYLGKTGDFATASKVM 591

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAK 317
           +K++    +    +Y  ++  + +K    +  +I+  M    +   +   Y ++I +L +
Sbjct: 592 EKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCR 651

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           +  +D AI L ++MK +  RP+   + +++  +     L  + ++   M     RP    
Sbjct: 652 NNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYIT 711

Query: 378 YVSLIESYAKAGKLD 392
              L E  +  G+++
Sbjct: 712 MEVLTEWLSAVGEIE 726


>gi|242032435|ref|XP_002463612.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
 gi|241917466|gb|EER90610.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
          Length = 638

 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 123/532 (23%), Positives = 218/532 (40%), Gaps = 15/532 (2%)

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           +L LF EM HD+S +     + YN ++   A     + S    + +L++    DT SY  
Sbjct: 2   LLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRY 61

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           ++  F + G   +  E++  M     + D S Y  ++ +  + G    A+ + ++M+   
Sbjct: 62  IVDAFASAGNLSRVAELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQADG 121

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P+   +  L+D  G+ GR D   +++ EM+     P    Y  L   Y   G     +
Sbjct: 122 CAPTAATYRVLLDLYGRQGRFDGVRELFREMR-TAVPPDTATYNVLFRVYGDGGFFKEVV 180

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            L+ +M   G  P+      ++ +  + G  + A  +   M R G +PT   Y+ L+E  
Sbjct: 181 ELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVEAL 240

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGYSVD 514
             +   + A   +N MT  G  P L TY  L    A+  L   A  I   M    G   +
Sbjct: 241 GHAAMYEEAYVAFNMMTEIGSLPTLETYNTLAFAYARGGLFQEAEAIFSRMSNNAGIQKN 300

Query: 515 VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
             + D L+  Y +   +D A++    M  S    +   +  +  +     + + +K   E
Sbjct: 301 KDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFE 360

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA-HAFLCGLFTGP--EQ 630
               S     ++ Y  +L+   R     +   ++  +   +  + H  +  L  G   + 
Sbjct: 361 ELQSSVTLPSIIAYCMMLSLYARNDRWADAYDMLEEMKTNRASSTHQVIASLIKGEYDDS 420

Query: 631 RKQPVLSFVRE--FFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF 688
               ++ +  E     G DY L       F N LL+ L   GQ  RA  V   A +  LF
Sbjct: 421 SNWQMVEYALENSTMEGCDYSLR------FFNALLDVLWWFGQKGRAARVLDQAVQFGLF 474

Query: 689 PKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLV 740
           P+ +  D  + WSLDV  +SVG AL+AV   L++   R++    +P+   +V
Sbjct: 475 PE-LYRDTKLVWSLDVHRMSVGGALVAVSVWLNKLYDRLVEDEDLPQLASVV 525


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 184/397 (46%), Gaps = 23/397 (5%)

Query: 130 LNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS---DTSLSLFRW 186
           +N +  A+ +  V ++    +L  ++ +  FVP     ++ +  +  +   + +  LF+ 
Sbjct: 254 VNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQE 313

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
            K      P    Y +L D   ++   +    LF+EM        +  ++A   +I    
Sbjct: 314 MKMVG-VTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTA---LIHAYL 369

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306
           KA ++  +   F +++D+ C+ +  +Y  L+      G   KAFE+Y  +     S D  
Sbjct: 370 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429

Query: 307 ----------------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
                           TY  ++  L K+ ++D A +L   M      P+  ++ +L+D  
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            KAG++D++ +V+++M  CG+ PS   Y SLI+   K G+LD A+++  +M      PN 
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 549

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +T +I+   + G+ + A+ + + ME  G  P   TY+ L++    +G++D ++ L+  
Sbjct: 550 VTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQ 609

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           M+  G  P   TY  L+  L    L+D A  +L EMK
Sbjct: 610 MSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 646



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 162/364 (44%), Gaps = 54/364 (14%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD    L  EM+    K  +   S Y++VI +L  A K+E ++  F+++       D  +
Sbjct: 269 FDKAFQLIKEMMR---KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 325

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y +L+  F   GL  +A  ++E M    CS    TY  +I +  K+ ++  A  +F  M 
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC----------------------- 369
           +   RP+   + +LVD + KAG +  + +VY ++ G                        
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 445

Query: 370 ----------------------------GHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
                                       G  P+  +Y +LI+ + KAGK+D+A  ++ +M
Sbjct: 446 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G+ P+   +T +I+   K G+LD+AM + + M +    P   TY+ +++     G+ 
Sbjct: 506 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           + A+KL + M   G  P + TYTAL+  L K   +D++  +  +M   G S +     VL
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 522 MVYI 525
           + ++
Sbjct: 626 INHL 629



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 163/373 (43%), Gaps = 51/373 (13%)

Query: 172 KVINDSDTSLSLFRW-AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK- 229
           K+I  SD++ S F +  + +    P    Y  L D L ++   D    L D M+    + 
Sbjct: 418 KLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEP 477

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
           N I     Y+ +I    KA K++ +   F ++          +Y  L+      G    A
Sbjct: 478 NHI----VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLA 533

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            ++   M K  C+ +  TY  MI  L + G  + A+KL   M+E+   P+   + +L+D 
Sbjct: 534 MKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDG 593

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR------- 402
           +GKAG++D S+ ++ +M   G  P+   Y  LI     AG LD A  L  EM+       
Sbjct: 594 LGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKY 653

Query: 403 -------IAGFRPNF-------------------GLFTMIIESHAKSGKLDIAMSIFTDM 436
                  I GF  +F                    ++ M+I+  +K+G+L+IAM +  +M
Sbjct: 654 LQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEM 713

Query: 437 ERAGFLPTPST-------YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
                +  PS+       Y+ L++    + QV+ A +LY+ MT  G  P LS +  L+  
Sbjct: 714 -----MEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKG 768

Query: 490 LAKRKLVDVAAKI 502
           L + K  D A ++
Sbjct: 769 LVEVKKWDEALQL 781



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 176/408 (43%), Gaps = 25/408 (6%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A +IY  M    C L+          L   G+ D A +L +EM  + F P  + ++ ++ 
Sbjct: 237 AEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVIT 296

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
            +  A +++ +  ++ EM+  G  P    Y  LI+S+ KAG ++ A  L++EMR  G  P
Sbjct: 297 FLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSP 356

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
               +T +I ++ K+ ++  A  IF  M  AG  P   TY  L++    +G +  A ++Y
Sbjct: 357 TVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVY 416

Query: 469 NSMTSAG----------------LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +                    L P + TY AL+  L K   VD A ++L  M + G  
Sbjct: 417 AKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCE 476

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            +    D L+  + K G +D A      M   G   +      L +   K+   + A  +
Sbjct: 477 PNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 536

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL-CGLFTGPEQ 630
           L   ++ +   ++V YT+++  L R  + +    L++++       +      L  G  +
Sbjct: 537 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 596

Query: 631 RKQPVLSFVREFFHGIDYELEEGAARYFVN--VLLNYLVLMGQINRAR 676
             +  LS   + F  +     +G +  +V   VL+N+L   G +++AR
Sbjct: 597 AGKIDLSL--DLFTQMS---RKGCSPNYVTYRVLINHLCAAGLLDKAR 639



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 141/314 (44%), Gaps = 35/314 (11%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++  L KA K++ ++     +L S C+ +   Y+ L+  F   G    A E++  M 
Sbjct: 447 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMT 506

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K        TY  +I  + K GRLD A+K+  +M + +  P+   + +++D + + G  +
Sbjct: 507 KCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESE 566

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++K+   M+  G  P+   Y +LI+   KAGK+D +L L+ +M   G  PN+  + ++I
Sbjct: 567 KALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLI 626

Query: 418 ESHAKSGKLDIA---------------------------------MSIFTDMERAGFLPT 444
                +G LD A                                 + I  +ME  G +P 
Sbjct: 627 NHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPI 686

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSM--TSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
              Y  L++  + +G+++ AM+L+  M    + ++     Y +L+  L     V+ A ++
Sbjct: 687 APVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRL 746

Query: 503 LLEMKTMGYSVDVS 516
             EM   G+  ++S
Sbjct: 747 YSEMTRRGFVPELS 760



 Score = 95.9 bits (237), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 142/318 (44%), Gaps = 40/318 (12%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG-ISLFSAYNRVIQYLAKADKLEM 253
           P    Y  L D   ++   D    +F +M    +K G +     Y  +I  + K  +L++
Sbjct: 477 PNHIVYDALIDGFCKAGKIDSAQEVFLQM----TKCGYLPSVHTYTSLIDRMFKDGRLDL 532

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++L   C  +  +Y  ++      G   KA ++   ME+  CS +  TY  +I 
Sbjct: 533 AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALID 592

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD---------------- 357
            L K+G++D ++ LF +M  +   P++  +  L++ +  AG LD                
Sbjct: 593 GLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPK 652

Query: 358 -----------------TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
                             S+ +  EM+  G  P AP+Y  LI+ ++KAG+L+ A+ L  E
Sbjct: 653 YLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKE 712

Query: 401 MR--IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           M    +  + +  ++  +I++   + +++ A  ++++M R GF+P  S + CL++     
Sbjct: 713 MMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEV 772

Query: 459 GQVDSAMKLYNSMTSAGL 476
            + D A++L   +   G+
Sbjct: 773 KKWDEALQLCYGICHEGV 790



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 145/366 (39%), Gaps = 45/366 (12%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++Q L+ A ++++ +   K++ +S   +D  +          +G    A ++   +E
Sbjct: 43  YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDM---IE 99

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           + +  LD      MI  L ++   D A+     M+  +  P+   + +L+    K  +L 
Sbjct: 100 REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLG 159

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              ++   M   G  P+  ++ SL+ SY        A +L + M   G  P + ++ + I
Sbjct: 160 WCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFI 219

Query: 418 ESHAKS-----------------------------------------GKLDIAMSIFTDM 436
            S                                             GK D A  +  +M
Sbjct: 220 GSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEM 279

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            R GF+P  STYS ++     + +V+ A  L+  M   G+ P + TYT L+    K  L+
Sbjct: 280 MRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLI 339

Query: 497 DVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           + A  +  EM+++G S   V+ + ++  Y+K   V  A      M  +G R N+     L
Sbjct: 340 EQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGAL 399

Query: 556 FESCMK 561
            +   K
Sbjct: 400 VDGLCK 405



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 10/245 (4%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY  ++  L+ +G++D   ++ +EM E  F            ++ K GR   ++ + +E 
Sbjct: 42  TYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDM-IER 100

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +    +    +   +I    +A   D A+     MR     PN   +  ++    K  +L
Sbjct: 101 ED--FKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQL 158

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
                I   M   G  P PS ++ L+  + +      A KL N MT+ G  PG   Y   
Sbjct: 159 GWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIF 218

Query: 487 LTLLAKRK------LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRF 539
           +  +  ++      L+D+A KI  EM      ++ V+ ++        G  D A + ++ 
Sbjct: 219 IGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKE 278

Query: 540 MGSSG 544
           M   G
Sbjct: 279 MMRKG 283



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 9/190 (4%)

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA--KSGKLD 427
           G+RPS   Y +L++  + AG++D   R+  EM  +GF      FT+   +HA  K G+  
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGF--CMDRFTVGCFAHALCKEGRWA 92

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+ +   +ER  F       + ++     +   D AM   + M      P + TY  LL
Sbjct: 93  DALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLL 149

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR 546
           +   K+K +    +I+  M T G + + S  + L+  Y  +    +A + L  M + G  
Sbjct: 150 SGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC- 208

Query: 547 TNNFIVRQLF 556
              ++V  +F
Sbjct: 209 PPGYVVYNIF 218


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 195/442 (44%), Gaps = 36/442 (8%)

Query: 98  ESGSVIYT---GKGIRSVEPGFD---------DHVMVGGIKKPFLNASAVAKIVEVVNRW 145
           + G V+Y    G    S EPG D           ++  G+    +N S  ++ +  + ++
Sbjct: 144 QPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKF 203

Query: 146 KWGPELETQLDKLQFVPKMVHITQALKVINDS---DTSLSLFRWAKRQSWYVPGDECYVM 202
           +    +  ++    F+P     ++ +  + ++   + +  LF+  KR     P    Y  
Sbjct: 204 EKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNG-IAPDVYVYTT 262

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           L D   ++   +   + FDEM  D     +  ++A   +I    K+ K+  +   ++ +L
Sbjct: 263 LIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTA---LIHAYLKSRKVSKANEVYEMML 319

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL----------DGS------ 306
              C  +  +Y  L+      G   KA +IY+ M+K    +          DG+      
Sbjct: 320 SKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNV 379

Query: 307 -TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            TY  ++  L K+ ++  A  L + M      P+  ++ +L+D   KAG+LD + +V+  
Sbjct: 380 FTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTT 439

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M  CG+ P+   Y SLI+   K  +LD AL++  +M      PN  ++T +I+   K GK
Sbjct: 440 MLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 499

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
            D A  +   ME  G  P   TY+ +++    SG+V+  ++L   M+S G  P   TY  
Sbjct: 500 TDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRV 559

Query: 486 LLTLLAKRKLVDVAAKILLEMK 507
           L+       L+D A K+L EMK
Sbjct: 560 LINHCCSTGLLDEAHKLLEEMK 581



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 166/367 (45%), Gaps = 23/367 (6%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKL 251
           ++P    Y  +   L  +   +    LF EM     +NGI+     Y  +I    KA  +
Sbjct: 218 FIPDTSTYSKVIGYLCNASKVEKAFQLFQEM----KRNGIAPDVYVYTTLIDSFCKAGFI 273

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E +   F ++    C  +  +Y  L+  +L      KA E+YE M    C+ +  TY  +
Sbjct: 274 EQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTAL 333

Query: 312 IPSLAKSGRLDAAIKLFQEMKERN---------FR--------PSFNIFASLVDSMGKAG 354
           I  L K+G+++ A ++++ MK+ N         FR        P+   + +LVD + KA 
Sbjct: 334 IDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAY 393

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++  +  +   M   G  P+  +Y +LI+   KAGKLD A  ++  M   G+ PN   ++
Sbjct: 394 QVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYS 453

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+   K  +LD+A+ + + M      P    Y+ +++     G+ D A KL   M   
Sbjct: 454 SLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEK 513

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY-IKDGSVDHA 533
           G  P + TYTA++    K   V+   ++L +M + G + +     VL+ +    G +D A
Sbjct: 514 GCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEA 573

Query: 534 LRWLRFM 540
            + L  M
Sbjct: 574 HKLLEEM 580



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 155/359 (43%), Gaps = 23/359 (6%)

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           ++   C    + +N L+  +   G    A+++ + M +  C      Y ++I  +  S  
Sbjct: 103 MITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEE 162

Query: 321 -----LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
                LD A K + EM E     +    ++    +   G+ + +  V  EM   G  P  
Sbjct: 163 PGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDT 222

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y  +I     A K++ A +L+ EM+  G  P+  ++T +I+S  K+G ++ A + F +
Sbjct: 223 STYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDE 282

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           MER G  P   TY+ L+  +  S +V  A ++Y  M S G  P + TYTAL+  L K   
Sbjct: 283 MERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGK 342

Query: 496 VDVAAKILLEMKT---------MGYSVDVSASDVLMVYIKDGSVD---------HALRWL 537
           ++ A++I   MK          M + V   AS+   V+     VD          A   L
Sbjct: 343 IEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLL 402

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           + M   G   N+ +   L + C K    + A+ +  T +E     ++  Y+S++  L +
Sbjct: 403 KSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFK 461



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 111/218 (50%), Gaps = 5/218 (2%)

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           V D + N  ++F+ Y  ++  L KA +++ +    K +    C+ +   Y+ L+      
Sbjct: 369 VVDGASNEPNVFT-YGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKA 427

Query: 284 GLPYKAFEIYESMEKGECSLDGS--TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
           G   +A E++ +M   EC  D +  TY  +I  L K  RLD A+K+  +M E +  P+  
Sbjct: 428 GKLDEAQEVFTTML--ECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVV 485

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
           I+  ++D + K G+ D + K+ + M+  G  P+   Y ++I+ + K+G+++  L L  +M
Sbjct: 486 IYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQM 545

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
              G  PNF  + ++I     +G LD A  +  +M++ 
Sbjct: 546 SSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQT 583



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 125/273 (45%), Gaps = 39/273 (14%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  +L+++     K+L++ C  +   Y  ++      G   +A+++   M
Sbjct: 451 TYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMM 510

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+  C+ +  TY  MI    KSGR++  ++L Q+M  +   P+F  +  L++     G L
Sbjct: 511 EEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLL 570

Query: 357 DTSMKVYMEMQG-------CGHR--------------------------PSAPMYVSLIE 383
           D + K+  EM+         G+R                          P AP+Y  LI+
Sbjct: 571 DEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIASLYLSFEISENDSVPVAPVYRVLID 630

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRP----NFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           ++ KAG+L+ AL L +E+  + F P    N  +   +IE+ + + K D A  ++ DM   
Sbjct: 631 NFIKAGRLEIALELNEEL--SSFSPFSAANQNIHITLIENLSLAHKADKAFELYADMISR 688

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           G +P  S    L++      + + A++L +S+ 
Sbjct: 689 GSIPELSILVHLIKGLLRVNRWEEALQLLDSIC 721



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 126/309 (40%), Gaps = 6/309 (1%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           DT  Y  +++      L  +A +    M    C  +  TY +++       +L    ++ 
Sbjct: 41  DTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRIL 100

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE---SY 385
             M      PS  IF SLV +  ++G    + K+  +M  CG +P   +Y  LI    S 
Sbjct: 101 SMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSS 160

Query: 386 AKAGK--LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            + GK  LD A + + EM  AG   N    +         GK + A ++  +M   GF+P
Sbjct: 161 EEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIP 220

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
             STYS ++    ++ +V+ A +L+  M   G+ P +  YT L+    K   ++ A    
Sbjct: 221 DTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWF 280

Query: 504 LEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            EM+  G + +V     L+  Y+K   V  A      M S G   N      L +   K 
Sbjct: 281 DEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKA 340

Query: 563 ALYESAKPL 571
              E A  +
Sbjct: 341 GKIEKASQI 349



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 133/315 (42%), Gaps = 6/315 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y ++I  L +A   E +     ++  S C  +  +Y +L+   LNK    +   I   M 
Sbjct: 45  YTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMI 104

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF---NIFASLVDSMGKAG 354
              C      +  ++ +  +SG    A KL ++M +   +P +   NI    + S  + G
Sbjct: 105 TEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPG 164

Query: 355 R--LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
           +  LD + K Y EM   G   +     +        GK + A  +  EM   GF P+   
Sbjct: 165 KDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTST 224

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           ++ +I     + K++ A  +F +M+R G  P    Y+ L++    +G ++ A   ++ M 
Sbjct: 225 YSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEME 284

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
             G  P + TYTAL+    K + V  A ++   M + G + ++     L+    K G ++
Sbjct: 285 RDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIE 344

Query: 532 HALRWLRFMGSSGIR 546
            A +  + M    + 
Sbjct: 345 KASQIYKIMKKENVE 359



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/260 (19%), Positives = 97/260 (37%), Gaps = 41/260 (15%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P   +Y  +I    +A   + A+     MR +   PN   + +++       KL     I
Sbjct: 40  PDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRI 99

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
            + M   G  P+P  ++ L+  +  SG    A KL   M   G +PG   Y  L+  +  
Sbjct: 100 LSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICS 159

Query: 493 -----RKLVDVAAK-----------------------------------ILLEMKTMGYS 512
                + ++D+A K                                   ++ EM + G+ 
Sbjct: 160 SEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFI 219

Query: 513 VDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D S    ++ Y+ + S V+ A +  + M  +GI  + ++   L +S  K    E A+  
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279

Query: 572 LETYVESAAKVDLVLYTSVL 591
            +         ++V YT+++
Sbjct: 280 FDEMERDGCAPNVVTYTALI 299


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 184/397 (46%), Gaps = 23/397 (5%)

Query: 130 LNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS---DTSLSLFRW 186
           +N +  A+ +  V ++    +L  ++ +  FVP     ++ +  +  +   + +  LF+ 
Sbjct: 254 VNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQE 313

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
            K      P    Y +L D   ++   +    LF+EM        +  ++A   +I    
Sbjct: 314 MKMVG-VTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTA---LIHAYL 369

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306
           KA ++  +   F +++D+ C+ +  +Y  L+      G   KAFE+Y  +     S D  
Sbjct: 370 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429

Query: 307 ----------------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
                           TY  ++  L K+ ++D A +L   M      P+  ++ +L+D  
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            KAG++D++ +V+++M  CG+ PS   Y SLI+   K G+LD A+++  +M      PN 
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 549

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +T +I+   + G+ + A+ + + ME  G  P   TY+ L++    +G++D ++ L+  
Sbjct: 550 VTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQ 609

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           M+  G  P   TY  L+  L    L+D A  +L EMK
Sbjct: 610 MSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 646



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 162/364 (44%), Gaps = 54/364 (14%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD    L  EM+    K  +   S Y++VI +L  A K+E ++  F+++       D  +
Sbjct: 269 FDKAFQLIKEMMR---KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 325

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y +L+  F   GL  +A  ++E M    CS    TY  +I +  K+ ++  A  +F  M 
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC----------------------- 369
           +   RP+   + +LVD + KAG +  + +VY ++ G                        
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 445

Query: 370 ----------------------------GHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
                                       G  P+  +Y +LI+ + KAGK+D+A  ++ +M
Sbjct: 446 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G+ P+   +T +I+   K G+LD+AM + + M +    P   TY+ +++     G+ 
Sbjct: 506 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           + A+KL + M   G  P + TYTAL+  L K   +D++  +  +M   G S +     VL
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 522 MVYI 525
           + ++
Sbjct: 626 INHL 629



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 163/373 (43%), Gaps = 51/373 (13%)

Query: 172 KVINDSDTSLSLFRW-AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK- 229
           K+I  SD++ S F +  + +    P    Y  L D L ++   D    L D M+    + 
Sbjct: 418 KLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEP 477

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
           N I     Y+ +I    KA K++ +   F ++          +Y  L+      G    A
Sbjct: 478 NHI----VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLA 533

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            ++   M K  C+ +  TY  MI  L + G  + A+KL   M+E+   P+   + +L+D 
Sbjct: 534 MKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDG 593

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR------- 402
           +GKAG++D S+ ++ +M   G  P+   Y  LI     AG LD A  L  EM+       
Sbjct: 594 LGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKY 653

Query: 403 -------IAGFRPNF-------------------GLFTMIIESHAKSGKLDIAMSIFTDM 436
                  I GF  +F                    ++ M+I+  +K+G+L+IAM +  +M
Sbjct: 654 LQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEM 713

Query: 437 ERAGFLPTPST-------YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
                +  PS+       Y+ L++    + QV+ A +LY+ MT  G  P LS +  L+  
Sbjct: 714 -----MEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKG 768

Query: 490 LAKRKLVDVAAKI 502
           L + K  D A ++
Sbjct: 769 LVEVKKWDEALQL 781



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 176/408 (43%), Gaps = 25/408 (6%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A +IY  M    C L+          L   G+ D A +L +EM  + F P  + ++ ++ 
Sbjct: 237 AEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVIT 296

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
            +  A +++ +  ++ EM+  G  P    Y  LI+S+ KAG ++ A  L++EMR  G  P
Sbjct: 297 FLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSP 356

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
               +T +I ++ K+ ++  A  IF  M  AG  P   TY  L++    +G +  A ++Y
Sbjct: 357 TVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVY 416

Query: 469 NSMTSAG----------------LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +                    L P + TY AL+  L K   VD A ++L  M + G  
Sbjct: 417 AKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCE 476

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            +    D L+  + K G +D A      M   G   +      L +   K+   + A  +
Sbjct: 477 PNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 536

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL-CGLFTGPEQ 630
           L   ++ +   ++V YT+++  L R  + +    L++++       +      L  G  +
Sbjct: 537 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 596

Query: 631 RKQPVLSFVREFFHGIDYELEEGAARYFVN--VLLNYLVLMGQINRAR 676
             +  LS   + F  +     +G +  +V   VL+N+L   G +++AR
Sbjct: 597 AGKIDLSL--DLFTQMS---RKGCSPNYVTYRVLINHLCAAGLLDKAR 639



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 141/314 (44%), Gaps = 35/314 (11%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++  L KA K++ ++     +L S C+ +   Y+ L+  F   G    A E++  M 
Sbjct: 447 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMT 506

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K        TY  +I  + K GRLD A+K+  +M + +  P+   + +++D + + G  +
Sbjct: 507 KCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESE 566

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++K+   M+  G  P+   Y +LI+   KAGK+D +L L+ +M   G  PN+  + ++I
Sbjct: 567 KALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLI 626

Query: 418 ESHAKSGKLDIA---------------------------------MSIFTDMERAGFLPT 444
                +G LD A                                 + I  +ME  G +P 
Sbjct: 627 NHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPI 686

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSM--TSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
              Y  L++  + +G+++ AM+L+  M    + ++     Y +L+  L     V+ A ++
Sbjct: 687 APVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRL 746

Query: 503 LLEMKTMGYSVDVS 516
             EM   G+  ++S
Sbjct: 747 YSEMTRRGFVPELS 760



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 145/366 (39%), Gaps = 45/366 (12%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++Q L+ A ++++ +   K++ +S   +D  +          +G    A ++   +E
Sbjct: 43  YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDM---IE 99

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           + +  LD      MI  L ++   D A+     M+  +  P+   + +L+    K  +L 
Sbjct: 100 REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLG 159

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              ++   M   G  P+  ++ SL+ SY        A +L + M   G  P + ++ + I
Sbjct: 160 WCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFI 219

Query: 418 ESHAKS-----------------------------------------GKLDIAMSIFTDM 436
            S                                             GK D A  +  +M
Sbjct: 220 GSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEM 279

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            R GF+P  STYS ++     + +V+ A  L+  M   G+ P + TYT L+    K  L+
Sbjct: 280 MRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLI 339

Query: 497 DVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           + A  +  EM+++G S   V+ + ++  Y+K   V  A      M  +G R N+     L
Sbjct: 340 EQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGAL 399

Query: 556 FESCMK 561
            +   K
Sbjct: 400 VDGLCK 405



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 10/245 (4%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY  ++  L+ +G++D   ++ +EM E  F            ++ K GR   ++ + +E 
Sbjct: 42  TYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDM-IER 100

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +    +    +   +I    +A   D A+     MR     PN   +  ++    K  +L
Sbjct: 101 ED--FKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQL 158

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
                I   M   G  P PS ++ L+  + +      A KL N MT+ G  PG   Y   
Sbjct: 159 GWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIF 218

Query: 487 LTLLAKRK------LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRF 539
           +  +  ++      L+D+A KI  EM      ++ V+ ++        G  D A + ++ 
Sbjct: 219 IGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKE 278

Query: 540 MGSSG 544
           M   G
Sbjct: 279 MMRKG 283



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 68/174 (39%), Gaps = 34/174 (19%)

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF----------------------- 406
           G+RPS   Y +L++  + AG++D   R+  EM  +GF                       
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 94

Query: 407 -----RPNFGLFTMIIESHAKSGKL-----DIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
                R +F L T++  +H  SG +     D AMS    M     +P   TY  LL    
Sbjct: 95  LDMIEREDFKLDTVLC-THMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFL 153

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
              Q+    ++ N M + G  P  S + +L+      K    A K+L  M T G
Sbjct: 154 KKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG 207


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 176/390 (45%), Gaps = 33/390 (8%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN VI  L K   +  +     KV  S  K DT +Y  ++  +        AFEI+  M+
Sbjct: 231 YNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMD 290

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  + +TY  +I  L  SGR++ A+    EM      P+ + F + + ++   GR++
Sbjct: 291 EEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIE 350

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIES-------------YAKAG--------------- 389
            + K++++M+  G +P+   Y SLI                ++ G               
Sbjct: 351 DAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVL 410

Query: 390 ----KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
               ++D+AL +++ M   G  PN   +  +I  +   G  + AMS+ T+M +    PT 
Sbjct: 411 MENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTL 470

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ +++ +  SG  D A+++   M + G +P   +YT L++   K   +++A+ +  E
Sbjct: 471 VTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNE 530

Query: 506 MKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           M   G    +V+ + ++  Y KD  +D A R L  M  SG R N      L     K   
Sbjct: 531 MMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNN 590

Query: 565 YESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           +  A+ L +  +E     D+V Y++V+  L
Sbjct: 591 FSGAEELCKVMLEEKISPDVVTYSTVINGL 620



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 153/326 (46%), Gaps = 2/326 (0%)

Query: 223 MVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           + H  S++G+   +  YN ++  L +  +++ +   F  +    C  +T SYN L+  + 
Sbjct: 387 LFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYC 446

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
             G   KA  +  +M KG  +    TY ++I     SG  D AI++ + MK    +P   
Sbjct: 447 TIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEW 506

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            +  L+    K  +++ +  ++ EM   G  P+   Y +LI  Y K  KLD A R+ + M
Sbjct: 507 SYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERM 566

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
           + +G RPN   + ++I    K      A  +   M      P   TYS ++    ++G +
Sbjct: 567 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAI 626

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDV 520
             A++++N M   G  P L TY++L+  L +   V+ A ++  E+K  G   D V+   +
Sbjct: 627 PLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKM 686

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIR 546
           + V +  G VD A  +L  M ++G +
Sbjct: 687 IEVCVMSGKVDRAFDFLGEMINAGCQ 712



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 162/381 (42%), Gaps = 6/381 (1%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG-ISLF 235
           S  ++ LF    R    VP    Y  L +VL E+ + D  L +F+ M     K+G +   
Sbjct: 381 SRMAIGLFHRMSRDG-VVPNTVTYNALMNVLMENMEIDSALIVFNMM----GKHGCLPNT 435

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S+YN +I+        E +      +L         +YN+++  + + G    A  + E 
Sbjct: 436 SSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLEL 495

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M+   C  D  +Y  +I    K  +++ A  +F EM +R   P+   + +L+    K  +
Sbjct: 496 MKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEK 555

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           LD + ++   M+  G RP+   Y  LI    K      A  L   M      P+   ++ 
Sbjct: 556 LDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYST 615

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I     +G + +A+ +F  M + G LP   TYS L++     G+V+ A ++++ +   G
Sbjct: 616 VINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQG 675

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALR 535
           L P   TY  ++ +      VD A   L EM   G    +   DVL+  +++  V H L 
Sbjct: 676 LIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLV 735

Query: 536 WLRFMGSSGIRTNNFIVRQLF 556
            L    S+    +  I + + 
Sbjct: 736 ALPNAASTSTFDDQIINKDVI 756



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 128/286 (44%), Gaps = 4/286 (1%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY  ++  L K       +  + ++     +P+  I+ S+++++ K G +  +  +  ++
Sbjct: 195 TYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKV 254

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G +P    Y S+I  Y +   LD+A  +++ M   G  PN   ++ +I     SG++
Sbjct: 255 FKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRV 314

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           + A+   ++M R G LPT  T++  +      G+++ A K++  M   G +P + TYT  
Sbjct: 315 NEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYT-- 372

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI 545
            +L++ +++  +A  +   M   G   +    + LM V +++  +D AL     MG  G 
Sbjct: 373 -SLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGC 431

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             N     +L          E A  +L   ++      LV Y  ++
Sbjct: 432 LPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIII 477



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 22/292 (7%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    K +KL+ +    +++  S C+ + Q+YNVL+     +     A E+ + M
Sbjct: 542 TYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM 601

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            + + S D  TY  +I  L  +G +  A+++F +M +    P+ + ++SL+ ++G+ GR+
Sbjct: 602 LEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRV 661

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + +++ E++  G  P    YV +IE    +GK+D A     EM  AG +P    + ++
Sbjct: 662 EEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVL 721

Query: 417 IES--------------HAKSGKL--------DIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           I+               +A S           D+   + + +    F  +   Y  LL  
Sbjct: 722 IKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSR 781

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            + SG+   A  LY SM S    P   TY   L  L +   VD+A  +   M
Sbjct: 782 LSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHM 833



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 116/258 (44%), Gaps = 2/258 (0%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           MI S +    +  A+       +R  +     + +L+  + K     T M  Y ++   G
Sbjct: 164 MIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREG 223

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
            +P+  +Y S+I +  K G +  A  + +++  +G +P+   +T +I  + ++  LD A 
Sbjct: 224 LQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAF 283

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            IF  M+  G  P  +TYS L+    +SG+V+ A+   + MT  G+ P + T+TA +  L
Sbjct: 284 EIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVAL 343

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
                ++ A KI ++MK  G   +V     L+   +   +  A+     M   G+  N  
Sbjct: 344 CDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRM--AIGLFHRMSRDGVVPNTV 401

Query: 551 IVRQLFESCMKNALYESA 568
               L    M+N   +SA
Sbjct: 402 TYNALMNVLMENMEIDSA 419



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 124/320 (38%), Gaps = 25/320 (7%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y  L     +    D    + + M     +  +     YN +I  L K +    +
Sbjct: 538 PNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQ---TYNVLIHGLTKQNNFSGA 594

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               K +L+     D  +Y+ ++    N G    A E++  M K  C  +  TY  +I +
Sbjct: 595 EELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQA 654

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L + GR++ A ++F E+K++   P    +  +++    +G++D +     EM   G +P+
Sbjct: 655 LGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPT 714

Query: 375 APMYVSLIES------YAKAGKLDTALR----------------LWDEMRIAGFRPNFGL 412
              Y  LI+       Y K   L  A                  L  ++    F  +  L
Sbjct: 715 LQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQL 774

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  ++   ++SG+   A +++  M      P   TY   L     + +VD AM ++  M+
Sbjct: 775 YDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMS 834

Query: 473 SAGLRPGLSTYTALLTLLAK 492
                  L+ Y  L+  L +
Sbjct: 835 DQRCELHLTGYKELICTLCQ 854



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 9/195 (4%)

Query: 357 DTSMKVYMEMQGCGHRPSA--PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           DT  KV M +     RP+A     + +I+S +   ++  AL   D     G  P  GLFT
Sbjct: 138 DTFAKVAMRLLESRDRPAAVGRARIHMIKSCSNKAEMTQALNYLDMFSQRG--PKMGLFT 195

Query: 415 ---MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
              ++I+ + K       M  +  + R G  P    Y+ ++      G V  A  + N +
Sbjct: 196 YTTLLIQLN-KLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKV 254

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSV 530
             +G++P   TYT+++    + + +D A +I   M   G   + +  S ++      G V
Sbjct: 255 FKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRV 314

Query: 531 DHALRWLRFMGSSGI 545
           + AL ++  M   G+
Sbjct: 315 NEALDFISEMTRHGV 329


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 177/385 (45%), Gaps = 45/385 (11%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
            +T+  L   A R+   VP    Y +LFD  + + D   MLSLF+E V    K G     
Sbjct: 275 GETAAVLDEMASRK--MVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIG----- 327

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID--TQSYNVLMTLFLNKGLPYKAFEIYE 294
                            +Y C   +L+  CK    +++  VL TL +N GL  +   IY 
Sbjct: 328 -----------------AYTC-SILLNGLCKDGKISKAEEVLQTL-VNSGL-LQTTVIYN 367

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++  G C +               G L+ A  +FQ+MK R  RP    + +L++ +GK  
Sbjct: 368 TLINGYCQI---------------GDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVE 412

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R+  +  + +EM+  G  PS   + +LI++Y +AG+L+    +  +M+  G +PN   + 
Sbjct: 413 RITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYG 472

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            I+ +  K+GK+  A++I  DM     LP    Y+ +++ +   G  D A  L   M S+
Sbjct: 473 SIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSS 532

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           G+ P + TY  L+  L K+  +  A ++L  ++  G + DV + + L+       + D A
Sbjct: 533 GVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRA 592

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFES 558
           L   + M   GI+ +    R LF S
Sbjct: 593 LELEKEMWKCGIKPSPRTYRMLFSS 617



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 192/441 (43%), Gaps = 10/441 (2%)

Query: 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDECY-VMLFDVLNESRDFDGMLSLFDEMVHDS 227
           QA  V  D D ++ + R         P    Y V++  +     D D  + LFDEM    
Sbjct: 160 QACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDA-VKLFDEM---P 215

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
            K  +     YN +I    K   LE  +  + ++L    K +  +YNVL++     G   
Sbjct: 216 EKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMG 275

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +   + + M   +   DG TY ++    +++G     + LF+E  ++  +      + L+
Sbjct: 276 ETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILL 335

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           + + K G++  + +V   +   G   +  +Y +LI  Y + G L+ A  ++ +M+    R
Sbjct: 336 NGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIR 395

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+   +  +I    K  ++  A  +  +ME+ G  P+  T++ L++ +  +GQ++    +
Sbjct: 396 PDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFII 455

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM--KTMGYSVDVSASDVLMVYI 525
            + M   GL+P + +Y +++    K   +  A  IL +M  K +     V  + ++  YI
Sbjct: 456 LSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNA-IIDAYI 514

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           + GS D A      M SSG+  +      L +   K +    A+ LL++        D++
Sbjct: 515 ECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVI 574

Query: 586 LYTSVLAHLVRCQDEQNERHL 606
            Y ++++    C     +R L
Sbjct: 575 SYNTLISAC--CYRSNTDRAL 593



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 112/266 (42%), Gaps = 3/266 (1%)

Query: 222 EMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           ++V +  KNG++     +N +I    +A +LE  +     + +   K +  SY  ++  F
Sbjct: 419 DLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAF 478

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   +A  I + M   +       Y  +I +  + G  D A  L ++MK     PS 
Sbjct: 479 CKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSI 538

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             +  L+  + K  ++  + ++   ++  G  P    Y +LI +       D AL L  E
Sbjct: 539 VTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKE 598

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M   G +P+   + M+  S   +G++    +++  M     +P    Y+ +++ +A  G+
Sbjct: 599 MWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGE 658

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTAL 486
                 L   M+  G+  G   YT++
Sbjct: 659 ESKVEALRKEMSDKGIAVG--DYTSM 682


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 148/308 (48%), Gaps = 1/308 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I  L K   ++ +    KK+L+    +D  +YN L++    +G   + F++   M K
Sbjct: 495 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 554

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY L+I  + + G+LD A+ L+ E K R+  P+   +  ++D   KA +++ 
Sbjct: 555 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 614

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
             K++ E+       ++ +Y +LI +Y + G    A +L D+MR  G  P    ++ +I 
Sbjct: 615 GEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIH 674

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
                G+++ A  +  +M + G LP    Y+ L+  +   GQ+D  + +   M+S  + P
Sbjct: 675 GMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHP 734

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWL 537
              TYT ++   +K   +  AAK+L EM   G   D    +VL   + K+G ++   +  
Sbjct: 735 NKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKIC 794

Query: 538 RFMGSSGI 545
            +M   G+
Sbjct: 795 DYMSQEGL 802



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 153/357 (42%), Gaps = 2/357 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           ++  L KA++LE SY  F+  +      D   ++  +  F   G    A +++  MEK  
Sbjct: 218 LLSSLVKANELEKSYWVFE-TMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG 276

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            S +  TY  +I  L K G LD A +  ++M +     +   ++ L++ + K  + + + 
Sbjct: 277 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEAN 336

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            V  E    G  P+  +Y +LI+ Y K G L  ALR+  +M   G  PN      II+  
Sbjct: 337 SVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGF 396

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K G+++ A  I  +M   GF   P  ++ ++     + + +SA++    M    +RP  
Sbjct: 397 CKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPND 456

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRF 539
              T L+  L K      A ++   +   G+  ++  ++ L+  + K G++  A+R L+ 
Sbjct: 457 GLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKK 516

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           M   G   +      L   C K    E    L    V+   + D   Y  ++  + R
Sbjct: 517 MLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCR 573



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 158/354 (44%), Gaps = 3/354 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI-YE 294
            A+  +I +L    + E +    +++L  + + +      L+     +G    A E+ + 
Sbjct: 422 GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFR 481

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            +EKG    +  T   +I  L K+G +  A++L ++M ER F      + +L+    K G
Sbjct: 482 LLEKG-FGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEG 540

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           +++   K+  EM   G  P    Y  LI    + GKLD A+ LW+E +     PN   + 
Sbjct: 541 KVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYG 600

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I+ + K+ K++    +FT++           Y+ L+  +  +G    A KL++ M S 
Sbjct: 601 VMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSK 660

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           G+ P  +TY++L+  +     ++ A  ++ EM+  G   +V     L+  Y K G +D  
Sbjct: 661 GIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKV 720

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           +  L+ M S  I  N      + +   K+   ++A  LL   V      D V Y
Sbjct: 721 VNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTY 774



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 116/251 (46%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  + +  KL+ +   + +    D   +  +Y V++  +       +  +++  +
Sbjct: 563 TYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTEL 622

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                 L+   Y  +I +  ++G    A KL  +M+ +   P+   ++SL+  M   GR+
Sbjct: 623 LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRM 682

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +  +  EM+  G  P+   Y +LI  Y K G++D  + +  EM      PN   +T++
Sbjct: 683 EDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM 742

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ ++KSG +  A  +  +M   G +P   TY+ L       G+++   K+ + M+  GL
Sbjct: 743 IDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGL 802

Query: 477 RPGLSTYTALL 487
                TYT L+
Sbjct: 803 PLDEITYTTLV 813



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 146/370 (39%), Gaps = 4/370 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L   L +  + D      ++MV D      +    Y+ +I  L K +K   +
Sbjct: 279 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN---ATLITYSVLINGLMKLEKFNEA 335

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               K+ L+     +   YN L+  +   G    A  I   M     + +  T   +I  
Sbjct: 336 NSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQG 395

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K G+++ A  + +EM  R F  +   F +++  +    R +++++   EM     RP+
Sbjct: 396 FCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPN 455

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
             +  +L+    K GK   A+ LW  +   GF  N      +I    K+G +  A+ +  
Sbjct: 456 DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 515

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   GF+    TY+ L+      G+V+   KL   M   G+ P   TY  L+  + +  
Sbjct: 516 KMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIG 575

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +D A  +  E K+     +V    V++  Y K   ++   +    + +  +  N+ +  
Sbjct: 576 KLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYN 635

Query: 554 QLFESCMKNA 563
            L  +  +N 
Sbjct: 636 TLIRAYCRNG 645



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 4/149 (2%)

Query: 224 VHDSSKN-GISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           +HD  ++ GI   +A Y+ +I  +    ++E + C   ++       +   Y  L+  + 
Sbjct: 653 LHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYC 712

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
             G   K   + + M   +   +  TY +MI   +KSG +  A KL  EM  +   P   
Sbjct: 713 KLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV 772

Query: 342 IFASLVDSMGKAGRLDTSMKV--YMEMQG 368
            +  L +   K G+++   K+  YM  +G
Sbjct: 773 TYNVLTNGFCKEGKIEEGFKICDYMSQEG 801


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 157/356 (44%), Gaps = 7/356 (1%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F  +N ++    K   +  +   F ++     +    S+N L++     G   + F +  
Sbjct: 142 FFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKG 201

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            ME      D  T+  +I  L K GRLD    LF EM  +   P+   F  L+D   K G
Sbjct: 202 VMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGG 261

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D ++K +  M   G RP    Y +LI    K G L  A RL +EM  +G RP+   FT
Sbjct: 262 KVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFT 321

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+   K G ++ A+ I   M   G       ++ L+      G+V  A ++   M SA
Sbjct: 322 TLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSA 381

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
           G +P   TYT ++    K+  V +  K+L EM++ G+   V   + LM  + K G V +A
Sbjct: 382 GFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNA 441

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNA------LYESAKPLLETYVESAAKVD 583
              L  M + G+  N+     L E   K+       ++ S K L++ Y    A V+
Sbjct: 442 KMLLDAMLNVGVAPNDITYNILLEGHSKHGSSVDVDIFNSEKGLVKDYASYTALVN 497



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 155/343 (45%), Gaps = 1/343 (0%)

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           +LE S+  + +VLDS    +   +NVLM  F   G    A  +++ + K        ++ 
Sbjct: 122 ELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFN 181

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I    K+G ++   +L   M+     P    F++L++ + K GRLD    ++ EM G 
Sbjct: 182 TLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGK 241

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   +  LI+   K GK+D AL+ +  M   G RP+   +  +I    K G L  A
Sbjct: 242 GLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEA 301

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             +  +M  +G  P   T++ L++     G ++SA+++   M   G+      +T L++ 
Sbjct: 302 RRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISG 361

Query: 490 LAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
           L +   V  A ++L +M + G+   D + + V+  + K G+V    + L+ M S G    
Sbjct: 362 LCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPG 421

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                 L     K    ++AK LL+  +      + + Y  +L
Sbjct: 422 VVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILL 464



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 127/295 (43%), Gaps = 39/295 (13%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L+ +   + E+ +  + P+F  F  L+    K G + ++  V+ E+   G RP+   + +
Sbjct: 123 LERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNT 182

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI    KAG ++   RL   M      P+   F+ +I    K G+LD    +F +M   G
Sbjct: 183 LISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKG 242

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
            +P   T++ L++     G+VD A+K +  M + G+RP L TY AL+  L K        
Sbjct: 243 LVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKV------- 295

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
                                      G +  A R +  M +SG+R +      L + C 
Sbjct: 296 ---------------------------GDLKEARRLVNEMSASGLRPDRITFTTLIDGCC 328

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD---EQNERHLMAILSA 612
           K    ESA  +    VE   ++D V +T +++ L  C+D      ER L  +LSA
Sbjct: 329 KYGDMESALEIKRRMVEEGIELDDVAFTVLISGL--CRDGRVHDAERMLRDMLSA 381


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/504 (24%), Positives = 209/504 (41%), Gaps = 46/504 (9%)

Query: 112 VEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDK------LQFVPKMV 165
           +EP F+D   V  + K   N      + +++N       +E+ LD       ++  P  V
Sbjct: 64  IEP-FND---VSDLVKSNRNLQPSPWVSQILNLLDGSASMESNLDGFCRKFLIKLSPNFV 119

Query: 166 H-ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFD---------- 214
             + ++ ++    D + S F W+++Q  Y    ECYV L DVL  ++D D          
Sbjct: 120 SFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFICSEIR 179

Query: 215 ------------------GMLSLFDEMV---HDSSKNGIS-LFSAYNRVIQYLAKADKLE 252
                             G L + +E++       +NGI      YN ++  L  A  ++
Sbjct: 180 KFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVD 239

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F+ +     K D  +YN ++  +   G   KA E    ME      D  TY  MI
Sbjct: 240 SAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMI 299

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            +        + + L+QEM E+  +   + F+ ++  + K G+L+    V+  M   G +
Sbjct: 300 QACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSK 359

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+  +Y  LI+ YAK G ++ A+RL   M   GF P+   +++++    K+G+++ AM  
Sbjct: 360 PNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDY 419

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F      G       YS L++    +G+VD A +L+  M+  G       Y AL+    K
Sbjct: 420 FQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 479

Query: 493 RKLVDVAAKILLEM-KTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNF 550
              VD A  +   M +  G    V    +L+    K+   + AL+    M   GI     
Sbjct: 480 HGKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAA 539

Query: 551 IVRQLFES-CMKNALYESAKPLLE 573
            +R L    C+   +  + K L E
Sbjct: 540 CLRALSTGLCLSGKVARACKILDE 563



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 148/304 (48%), Gaps = 6/304 (1%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           ++   ++++++     +G   + + ++E+M +     + + Y ++I   AK+G ++ AI+
Sbjct: 324 QVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIR 383

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           L   M +  F P    ++ +V+ + K GR++ +M  +   +  G   ++  Y SLI+   
Sbjct: 384 LLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLG 443

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA-GFLPTP 445
           KAG++D A RL++EM   G   +   +  +I++  K GK+D A+++F  ME   G   T 
Sbjct: 444 KAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTV 503

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ L+       + + A+KL++ M   G+ P  +   AL T L     V  A KIL E
Sbjct: 504 YTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDE 563

Query: 506 MKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
           +  MG  +D +  D++    K G +  A +      + GI      V     + M NAL 
Sbjct: 564 LAPMGVILDAACEDMINTLCKAGRIKEACKL-----ADGITERGREVPGRIRTVMINALR 618

Query: 566 ESAK 569
           +  K
Sbjct: 619 KVGK 622



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 159/354 (44%), Gaps = 12/354 (3%)

Query: 163 KMVHITQALKVINDSDTS--LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLF 220
           K+ ++T       DSD S  ++L++    +   VP     +++  +  E +  +G  ++F
Sbjct: 292 KITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEG-YAVF 350

Query: 221 DEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           + M+   SK  +++++    +I   AK   +E +     +++D     D  +Y+V++   
Sbjct: 351 ENMIRKGSKPNVAIYTV---LIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGL 407

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   +A + +++      +++   Y  +I  L K+GR+D A +LF+EM E+      
Sbjct: 408 CKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDS 467

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQ---GCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
             + +L+D+  K G++D ++ ++  M+   GC    +   Y  LI    K  + + AL+L
Sbjct: 468 YCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQ--TVYTYTILISGMFKEHRNEEALKL 525

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           WD M   G  P       +      SGK+  A  I  ++   G +   +    ++     
Sbjct: 526 WDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDELAPMGVILDAACED-MINTLCK 584

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +G++  A KL + +T  G        T ++  L K    D+A K++     +GY
Sbjct: 585 AGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKLMHSKIGIGY 638



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 125/288 (43%), Gaps = 1/288 (0%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  ++  LA +  +D    +  E+++  F  + +   SL+ S GK G ++  + V+ +M+
Sbjct: 155 YVSLVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMK 214

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P+   Y  L+     A  +D+A R+++ M     +P+   +  +I+ + K+G+  
Sbjct: 215 ENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQ 274

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+     ME  G      TY  +++   +     S + LY  M   GL+     ++ ++
Sbjct: 275 KALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVI 334

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR 546
             L K   ++    +   M   G   +V+   VL+  Y K GSV+ A+R L  M   G  
Sbjct: 335 GGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFN 394

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            +      +     KN   E A    +T   +   ++ + Y+S++  L
Sbjct: 395 PDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGL 442



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 34/219 (15%)

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           YVSL++  A A  +D    +  E+R   F         +I+S  K G ++  + ++  M+
Sbjct: 155 YVSLVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMK 214

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  PT  TY+ L+    S+  VDSA +++  M S  ++P + TY  ++          
Sbjct: 215 ENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIK--------- 265

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
                                     Y K G    AL  LR M + G+  +      + +
Sbjct: 266 -------------------------GYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQ 300

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +C  ++ + S   L +   E   +V    ++ V+  L +
Sbjct: 301 ACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCK 339


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 172/340 (50%), Gaps = 13/340 (3%)

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
           D  C+ +  +YN L+        P +A E++E M+  ECS    TY  ++  L ++G+L+
Sbjct: 3   DHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLE 62

Query: 323 AAIKLFQEMKERNFRP--SFNIFASLVDSMGKAGRLDTSMKVYMEMQG-CGHRPSAPMYV 379
            A+ LFQEM +R      SFNI   LV  + +AG+++T+++ + +M   C   P+   Y 
Sbjct: 63  RAMALFQEMLDRRSHDVISFNI---LVTGLCRAGKIETALEFFRKMDDRCS--PNVITYS 117

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            LI+   KA ++  A+ L + M+  G  P+   +T++++   K  K+  A  +  +M  A
Sbjct: 118 VLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDA 177

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G +P   TY+ LL     + +V  A+ L   MT  G  P + TY  L+  L K   V  A
Sbjct: 178 GCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDA 237

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQ-LFE 557
             +L +M   G + D+   ++L+  + K   VD ++  LR   S GI+ +       ++ 
Sbjct: 238 CAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYG 297

Query: 558 SCMKNALYESAKPLLETYVES-AAKVDLVLYTSVLAHLVR 596
            C  N L E+ + LL  YV+S     D++LY++++  L +
Sbjct: 298 LCRSNRLDEACRLLL--YVKSRGCPPDVILYSTLIDGLCK 335



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 163/394 (41%), Gaps = 38/394 (9%)

Query: 237 AYNRVIQYLAKAD-----------------------------------KLEMSYCCFKKV 261
            YN +I  L K +                                   KLE +   F+++
Sbjct: 12  TYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEM 71

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           LD     D  S+N+L+T     G    A E +  M+   CS +  TY ++I  L K+ R+
Sbjct: 72  LDRRSH-DVISFNILVTGLCRAGKIETALEFFRKMDD-RCSPNVITYSVLIDGLCKANRV 129

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             A++L + MK R   P    +  LVD + K  ++  + +V  EM   G  P+   Y SL
Sbjct: 130 SQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSL 189

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           +    +A ++  AL L  +M   G  PN   +  +I+   K G++  A ++  DM   G 
Sbjct: 190 LHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG 249

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P    Y+ L+     + QVD ++ L     S G++P + TY++++  L +   +D A +
Sbjct: 250 TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACR 309

Query: 502 ILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +LL +K+ G   DV     L+  + K G VD A      M   G   +      L +   
Sbjct: 310 LLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLC 369

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           K    + A  LL   V        + Y S++  L
Sbjct: 370 KAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 403



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 198/473 (41%), Gaps = 49/473 (10%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           N+ D +  LF   K      P    Y  L D L  +   +  ++LF EM+   S + IS 
Sbjct: 24  NEPDRAQELFEHMKSVECS-PSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDVIS- 81

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              +N ++  L +A K+E +   F+K +D  C  +  +Y+VL+          +A E+ E
Sbjct: 82  ---FNILVTGLCRAGKIETALEFFRK-MDDRCSPNVITYSVLIDGLCKANRVSQAVELLE 137

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGR-----------LDA-------------------- 323
           SM+   CS D  TY +++  L K  +           LDA                    
Sbjct: 138 SMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRAR 197

Query: 324 ----AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
               A+ L ++M  R   P+   + +L+D + K GR+  +  +  +M   G  P   +Y 
Sbjct: 198 RVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYN 257

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            LI    KA ++D ++ L       G +P+   ++ +I    +S +LD A  +   ++  
Sbjct: 258 MLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSR 317

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P    YS L++    +G+VD A  LY  MT  G    + TY+ L+  L K   VD A
Sbjct: 318 GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEA 377

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIR----TNNFIVRQ 554
             +L  M  MG        + L+  + D   +D A+  +  M  S       T N ++  
Sbjct: 378 HLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHG 437

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           +   C    +  +A    +  +++    D + Y+ +L  L + +D    RHL+
Sbjct: 438 M---CRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLV 487


>gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16390, chloroplastic; AltName: Full=Chloroplastic
           RNA-binding protein P67; Flags: Precursor
 gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 702

 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/496 (22%), Positives = 223/496 (44%), Gaps = 43/496 (8%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K+  LE S   F ++L+   K D  ++  +++     G+P +A E +E M 
Sbjct: 178 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMS 237

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  D  T   MI +  ++G +D A+ L+   +   +R     F++L+   G +G  D
Sbjct: 238 SFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYD 297

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + +Y EM+  G +P+  +Y  LI+S  +A +   A  ++ ++   GF PN+  +  ++
Sbjct: 298 GCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 357

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GL 476
            ++ ++   D A++I+ +M+  G   T   Y+ LL M A +  VD A +++  M +    
Sbjct: 358 RAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETC 417

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P   T+++L+T+ A    V  A   LL+M+  G+   +   + V+  Y K   VD  +R
Sbjct: 418 DPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVR 477

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   GI  ++      F  C+ N + ++    +   +    K    L   V+  LV
Sbjct: 478 TFDQVLELGITPDD-----RFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKL-GQVVKMLV 531

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
              +EQN                    G+F     +K+       E    I  ++++   
Sbjct: 532 ---EEQNCEE-----------------GVF-----KKE-----ASELIDSIGSDVKKA-- 559

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
             ++N L++  V + ++ RA  + ++  E  ++   +       WSL +++LS+GAAL A
Sbjct: 560 --YLNCLIDLCVNLNKLERACEILQLGLEYDIY-TGLQSKSATQWSLHLKSLSLGAALTA 616

Query: 716 VMHTLHRFRKRMLYYG 731
           +   ++   +  L  G
Sbjct: 617 LHVWMNDLSEAALESG 632



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 127/292 (43%), Gaps = 40/292 (13%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           M  +  A     + D +LSL+  A+ + W +     +  L  +   S ++DG L++++EM
Sbjct: 248 MAAMIDAYGRAGNVDMALSLYDRARTEKWRIDA-VTFSTLIRIYGVSGNYDGCLNIYEEM 306

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
                K  + +   YNR+I  + +A +                                 
Sbjct: 307 KALGVKPNLVI---YNRLIDSMGRAKR--------------------------------- 330

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
             P++A  IY+ +     + + STY  ++ +  ++   D A+ +++EMKE+    +  ++
Sbjct: 331 --PWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILY 388

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
            +L+        +D + +++ +M+ C    P +  + SLI  YA +G++  A     +MR
Sbjct: 389 NTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMR 448

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            AGF P   + T +I+ + K+ ++D  +  F  +   G  P      CLL +
Sbjct: 449 EAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNV 500



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%)

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y   ++ + K+  L+ + +L+DEM   G +P+   FT II    ++G    A+  F  M
Sbjct: 177 LYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM 236

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   T + +++ +  +G VD A+ LY+   +   R    T++ L+ +       
Sbjct: 237 SSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 296

Query: 497 DVAAKILLEMKTMG 510
           D    I  EMK +G
Sbjct: 297 DGCLNIYEEMKALG 310


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 157/341 (46%), Gaps = 17/341 (4%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S Y +VI +L +A +++ ++  F+++       D  +Y +L+  F   GL  +A   ++ 
Sbjct: 453 STYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDE 512

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M    CS +  TY  ++ +  KS +L  A  +F  M      P+   +++L+D + KAG 
Sbjct: 513 MRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGE 572

Query: 356 LDTSMKVYMEMQGCGHR----------------PSAPMYVSLIESYAKAGKLDTALRLWD 399
           +  + +VY ++ G                    P+   Y +L+    KA K+  A  L D
Sbjct: 573 IQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLD 632

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            M  AG  PN  ++  +++   K G++D A  +F  M + G+LP+  TY+ L++     G
Sbjct: 633 AMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDG 692

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           ++D AMK+ + M      P + TYTA++  L K    + A  +L  M+  G S +V    
Sbjct: 693 RLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYT 752

Query: 520 VLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            L+  + K G VD  L     M + G   N    R L   C
Sbjct: 753 ALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHC 793



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 158/335 (47%), Gaps = 21/335 (6%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKL 251
           +VP    Y  +   L +++  D    LF EM     K G++     Y  +I    KA  +
Sbjct: 448 FVPDASTYTKVITFLCQAKRVDKAFLLFQEM----KKVGVNPDVYTYTILIDSFCKAGLI 503

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E +   F ++  + C  +  +Y  L+  +L     Y+A +I+  M    C  +  TY  +
Sbjct: 504 EQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSAL 563

Query: 312 IPSLAKSGRLDAAIKLFQEMK------ERNF----------RPSFNIFASLVDSMGKAGR 355
           I  L K+G +  A +++ ++       E +F           P+   + +LV+ + KA +
Sbjct: 564 IDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQK 623

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  +  +   M   G  P+  +Y +L++ + K G++D+A  ++  M   G+ P+   +T 
Sbjct: 624 VSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTS 683

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+   K G+LD+AM + + M +    P   TY+ +++    +G+ + A+ L + M   G
Sbjct: 684 LIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKG 743

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             P + TYTAL+  L K   VD   ++ ++MKT G
Sbjct: 744 CSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKG 778



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 173/378 (45%), Gaps = 23/378 (6%)

Query: 130 LNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS---DTSLSLFRW 186
           +N +  A+ +  V +++   ++  ++ +  FVP     T+ +  +  +   D +  LF+ 
Sbjct: 418 INTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQE 477

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
            K+     P    Y +L D   ++   +   S FDEM        +  ++A   ++    
Sbjct: 478 MKKVG-VNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTA---LLHAYL 533

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY------------- 293
           K+ +L  +   F +++   C  +  +Y+ L+      G   KA E+Y             
Sbjct: 534 KSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESD 593

Query: 294 ---ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
              E  +    S +  TY  ++  L K+ ++  A  L   M      P+  ++ +LVD  
Sbjct: 594 FYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGF 653

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K G +D++ +V++ M  CG+ PS   Y SLI+   K G+LD A+++  +M      PN 
Sbjct: 654 CKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNV 713

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +T +++   K+G+ + A+++ + ME+ G  P   TY+ L++    +G+VD+ ++L+  
Sbjct: 714 VTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQ 773

Query: 471 MTSAGLRPGLSTYTALLT 488
           M + G  P   TY  L+ 
Sbjct: 774 MKTKGCAPNYVTYRILIN 791



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/494 (22%), Positives = 207/494 (41%), Gaps = 37/494 (7%)

Query: 146 KWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAK------RQSWYVPGDEC 199
           +WG  L+  L++  F    V  TQ +  + ++    SLF  A       R + Y+P    
Sbjct: 254 RWGDALDL-LEREDFKLDTVLCTQMISGLMEA----SLFNEAMSFLHRMRCNSYIPNVVT 308

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L     + +       + + M+ +      SLF   N ++     A+    +Y  F 
Sbjct: 309 YRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLF---NSLVHTYCNAEDYAYAYKLFN 365

Query: 260 KVLDSDCKIDTQSYNVLM-TLFLNKGLPYK-----AFEIYESMEKGECSLDGSTYELMIP 313
           ++    C      YN+ + ++   + LP       A ++YE M    C L+         
Sbjct: 366 RMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFAR 425

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L   G+ + A ++ +EM  + F P  + +  ++  + +A R+D +  ++ EM+  G  P
Sbjct: 426 CLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNP 485

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  LI+S+ KAG ++ A   +DEMR AG  PN   +T ++ ++ KS +L  A  IF
Sbjct: 486 DVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIF 545

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG----------------LR 477
             M      P   TYS L++    +G++  A ++Y  +                    + 
Sbjct: 546 HRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTIS 605

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P + TY AL+  L K + V  A  +L  M   G   +    D L+  + K G +D A   
Sbjct: 606 PNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEV 665

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              M   G   +      L +   K+   + A  +L   ++ +   ++V YT+++  L +
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCK 725

Query: 597 CQDEQNERHLMAIL 610
             + +   +L++++
Sbjct: 726 TGETEKALNLLSLM 739



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/488 (21%), Positives = 194/488 (39%), Gaps = 46/488 (9%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN-----------------E 209
           +   L  +   +  +  F WA+RQ  Y     CY  L +VL                  +
Sbjct: 104 VVAVLGAVRSPELCVRFFLWAERQVGYKHTGACYDALAEVLGFEDPARTAERLLREIGED 163

Query: 210 SRDFDGML-----------SLFDEMVHDSSKNGISLFS------AYNRVIQYLAKADKLE 252
            RD  G L            L+ E + +  +  +  F        YN ++Q LA A ++E
Sbjct: 164 DRDVLGRLLNVLVRRCCLQGLWGEALEELGR--LKDFGYRPSAVTYNALVQVLASAGQVE 221

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
           M++   K++  S   +D  +          +G    A ++   +E+ +  LD      MI
Sbjct: 222 MAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDALDL---LEREDFKLDTVLCTQMI 278

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L ++   + A+     M+  ++ P+   + +L+    K  +L    ++   M   G  
Sbjct: 279 SGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCN 338

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK------L 426
           PS  ++ SL+ +Y  A     A +L++ M   G  P + ++ + I S     +      L
Sbjct: 339 PSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELL 398

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           D+A  ++ +M  A  +      +         G+ + A ++   M   G  P  STYT +
Sbjct: 399 DLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKV 458

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI 545
           +T L + K VD A  +  EMK +G + DV    +L+  + K G ++ A  W   M S+G 
Sbjct: 459 ITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGC 518

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
             N      L  + +K+     A  +    V  A   + + Y++++  L +  + Q    
Sbjct: 519 SPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACE 578

Query: 606 LMAILSAT 613
           + A L  T
Sbjct: 579 VYAKLIGT 586



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 153/346 (44%), Gaps = 31/346 (8%)

Query: 188 KRQSWY--------VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS-KNGISLFSAY 238
           + QSW+         P    Y  L     +S+       +F  MV D+   N I+    Y
Sbjct: 505 QAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAIT----Y 560

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKI-----------DTQSYNVLMTLFLNKGLP- 286
           + +I  L KA +++ +   + K++ +   I           DT S NV+    L  GL  
Sbjct: 561 SALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCK 620

Query: 287 ----YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
                 A ++ ++M    C  +   Y+ ++    K G +D+A ++F  M +  + PS + 
Sbjct: 621 AQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHT 680

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           + SL+D M K GRLD +MKV  +M      P+   Y ++++   K G+ + AL L   M 
Sbjct: 681 YTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLME 740

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             G  PN   +T +I+   K+GK+D  + +F  M+  G  P   TY  L+    ++G +D
Sbjct: 741 KKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLD 800

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
            A  L + M        L  Y   +   +KR L  +   +L EM++
Sbjct: 801 DAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLG--LLEEMES 844



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 126/275 (45%), Gaps = 36/275 (13%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I  + K  +L+++     ++L   C  +  +Y  ++      G   KA  +   ME
Sbjct: 681 YTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLME 740

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG--- 354
           K  CS +  TY  +I  L K+G++DA ++LF +MK +   P++  +  L++    AG   
Sbjct: 741 KKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLD 800

Query: 355 ------------------------------RLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
                                         R   S+ +  EM+     P AP+Y  LI+S
Sbjct: 801 DAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPIAPVYGMLIDS 860

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFG---LFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           ++KAG+L+TAL L  EM       N     + T +I++   S +++ A++++++M R G 
Sbjct: 861 FSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMRRRGI 920

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +P  S + CL++      + + A++L   +   G+
Sbjct: 921 VPDLSAFVCLVKGLIERNKWNEALQLCYGICQEGV 955



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 138/316 (43%), Gaps = 36/316 (11%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++  L KA K+  ++     +L + C+ +   Y+ L+  F   G    A E++  M 
Sbjct: 611 YGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMT 670

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K        TY  +I  + K GRLD A+K+  +M + +  P+   + ++VD + K G  +
Sbjct: 671 KCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETE 730

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +   M+  G  P+   Y +LI+   KAGK+D  L L+ +M+  G  PN+  + ++I
Sbjct: 731 KALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILI 790

Query: 418 ESHAKSG---------------------------------KLDIAMSIFTDMERAGFLPT 444
                +G                                 +   ++ +  +ME     P 
Sbjct: 791 NHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPI 850

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST---YTALLTLLAKRKLVDVAAK 501
              Y  L++  + +G++++A++L+  M        +++   +T+L+  L     V+ A  
Sbjct: 851 APVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVA 910

Query: 502 ILLEMKTMGYSVDVSA 517
           +  EM+  G   D+SA
Sbjct: 911 LYSEMRRRGIVPDLSA 926


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 120/518 (23%), Positives = 232/518 (44%), Gaps = 48/518 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  VI    KA  L+  +   +++L + C  D  +Y VL+      G   +A+E++E M 
Sbjct: 127 YTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMR 186

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K  C  D  T+  +I +L+  G+LD A +L++EM ER + P   +  SL+ ++ KAG++D
Sbjct: 187 KSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVD 246

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + ++Y  +       S   Y SL++ Y K G++D  L+L  +M      P+   + +++
Sbjct: 247 EANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILV 306

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              +++ +LD A+ +F  +   G  P  +TY+ +++    + +++ A   ++        
Sbjct: 307 AGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALD---- 362

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRW 536
             + +YT ++  LA  K +D A ++  ++KT G S +V A + V+   +K G ++  L+ 
Sbjct: 363 --VISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKN 420

Query: 537 LRFM-GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
              M GSS + T       +   C    L ++ K + E  V+     D + YT+++    
Sbjct: 421 FEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACK-VFEQMVQKGCVPDTITYTTLIDGFS 479

Query: 596 RCQDEQNERHLMAIL-------SATKHKA--HAFLCGLFTGPEQRKQPVLSFVRE----- 641
           +       R L+ ++       +A  + +  H F C L    E ++  V++ +RE     
Sbjct: 480 KASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGF-CKLDMINEAKE--VIAQMRERGCEP 536

Query: 642 ----FFHGIDYELEEGAARYFVNV------------------LLNYLVLMGQINRARCVW 679
               F   + Y L +G A     V                  L++ L   G++  AR V+
Sbjct: 537 GLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVF 596

Query: 680 KVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVM 717
               E    P A+ +   I     + N+     ++ +M
Sbjct: 597 DSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELM 634



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 182/404 (45%), Gaps = 15/404 (3%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           N  D +L LF+         P    Y  +   L +++  +   + FDE +   S      
Sbjct: 313 NRLDDALELFKLLSSYGCK-PNAATYTTIIQGLYDAQRMEEAKAFFDEALDVIS------ 365

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              Y  VI+ LA + +++ +   F+K+  + C  +  +Y  ++   L  G      + +E
Sbjct: 366 ---YTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFE 422

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M    C    +TY ++I  L K+  L  A K+F++M ++   P    + +L+D   KA 
Sbjct: 423 DMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKAS 482

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + K+   M   G  P+A  Y S++  + K   ++ A  +  +MR  G  P   +FT
Sbjct: 483 KMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFT 542

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++  +   G+ + A  + T+M   G  P    Y+ L+++  S+G+V  A  +++SM   
Sbjct: 543 SLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEK 602

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           G  P   TY  ++   +K   V+ A +IL  M   G   D  A + LM  Y+K   VD A
Sbjct: 603 GCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQA 662

Query: 534 LRWLRFMGSSGIRTN----NFIVRQLFESCMKNALYESAKPLLE 573
                 M +SGI+ N    N ++  LF+    +  +   K +LE
Sbjct: 663 FGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLE 706



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 166/368 (45%), Gaps = 5/368 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q   VP    Y  L D  +++   D    L D M+   +K        Y  ++    K D
Sbjct: 461 QKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML---TKGPEPTAVTYGSIVHGFCKLD 517

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            +  +     ++ +  C+     +  L++ +L+KG   +A+++   M    C+ D   Y 
Sbjct: 518 MINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYT 577

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I  L  +GR+  A  +F  M E+   P    + +++ +  K G ++ + ++   M   
Sbjct: 578 SLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKS 637

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P    Y SL++ Y K  ++D A  ++D M  +G +PN   F +++    K GK D A
Sbjct: 638 GVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRA 697

Query: 430 MSIFTDM-ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
            S+F +M E+    PT  +Y+ L++    +G+V  A   +  M   G+ P   TYT+L+ 
Sbjct: 698 FSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIY 757

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRT 547
            LAK   +  A K++ +M  +G + DV A   L+  + D S VD A    + M   G   
Sbjct: 758 SLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAP 817

Query: 548 NNFIVRQL 555
           N    + L
Sbjct: 818 NEVTYKVL 825



 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 8/357 (2%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N V+  L KA K++ +   F ++    C+    SYN +++   +     +A++ + SM  
Sbjct: 24  NIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMID 83

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
             C  D   +  +I    K+G+      L  +  +R FRP   ++ S++    KAG LDT
Sbjct: 84  NGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDT 142

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
             K+  EM   G  P A  Y  LI+   K G++D A  L++ MR +G   ++  F  +IE
Sbjct: 143 GFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIE 202

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           + +  GKLD A  ++ +M   G+ P       L+     +G+VD A ++Y ++ +  +  
Sbjct: 203 ALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVAT 262

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWL 537
               Y +L+    K   VD   K+LL+M       D+   ++L+  + +   +D AL   
Sbjct: 263 SRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELF 322

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           + + S G + N      + +        E AK   +        +D++ YT+V+  L
Sbjct: 323 KLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE------ALDVISYTTVIKGL 373



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 177/400 (44%), Gaps = 11/400 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P  + Y +L    + +   D  L LF  +     K   +    Y  +IQ L  A ++E +
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAA---TYTTIIQGLYDAQRMEEA 353

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F + LD        SY  ++    +     +A E++E ++   CS +   Y  +I  
Sbjct: 354 KAFFDEALD------VISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDG 407

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+GR++  +K F++M   +  P+   +  ++D + KA  L  + KV+ +M   G  P 
Sbjct: 408 LLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPD 467

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +LI+ ++KA K+D A +L D M   G  P    +  I+    K   ++ A  +  
Sbjct: 468 TITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIA 527

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G  P    ++ LL  + S G+ + A ++   MT+ G  P +  YT+L+ LL    
Sbjct: 528 QMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTG 587

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            V  A  +   M   G + D ++   ++  + K G+V+ A   L  M  SG+  + F   
Sbjct: 588 RVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYN 647

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
            L +  +K    + A  + +  V S  K + V + +VL H
Sbjct: 648 SLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTF-NVLMH 686



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 192/444 (43%), Gaps = 35/444 (7%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG-ISLFSAYNRVIQYLAKADKLE 252
           +P    Y +L D L +    D    LF+ M     K+G +  +  +  +I+ L+   KL+
Sbjct: 156 IPDAAAYFVLIDPLCKLGRVDEAYELFERM----RKSGCLGDYVTFMTLIEALSNHGKLD 211

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   ++++++   +   +  + L+      G   +A EIY+++   + +     Y  ++
Sbjct: 212 EACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLM 271

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
               K GR+D  +KL  +M E +  P    +  LV    +A RLD +++++  +   G +
Sbjct: 272 DGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCK 331

Query: 373 PSAPMYVSLIE----------------------SY-------AKAGKLDTALRLWDEMRI 403
           P+A  Y ++I+                      SY       A + ++D A  L+++++ 
Sbjct: 332 PNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKT 391

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
           AG  PN   +T +I+   K+G+++  +  F DM  +  +PT +TY+ +++    +  +  
Sbjct: 392 AGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPD 451

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLM 522
           A K++  M   G  P   TYT L+   +K   +D A K+L  M T G     V+   ++ 
Sbjct: 452 ACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVH 511

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            + K   ++ A   +  M   G     FI   L    +     E A  +L          
Sbjct: 512 GFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAP 571

Query: 583 DLVLYTSVLAHLVRCQDEQNERHL 606
           D++LYTS++  L         RH+
Sbjct: 572 DVILYTSLIDLLFSTGRVPEARHV 595



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 4/262 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D+L  +        +FD M+    K        Y  +IQ  +K   +E +    +
Sbjct: 576 YTSLIDLLFSTGRVPEARHVFDSMIE---KGCAPDALTYGTIIQNFSKIGNVEAAGEILE 632

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +  S    D  +YN LM  ++      +AF +Y+ M       +  T+ +++  L K G
Sbjct: 633 LMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDG 692

Query: 320 RLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           + D A  LF+EM E++   P+   +  L+D +GKAGR+  +   + EM   G  P    Y
Sbjct: 693 KTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTY 752

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SLI S AKAG++  A +L ++M   G  P+   ++ +I     S  +D A  +F +M +
Sbjct: 753 TSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMK 812

Query: 439 AGFLPTPSTYSCLLEMHASSGQ 460
            G  P   TY  L     ++G+
Sbjct: 813 RGCAPNEVTYKVLRRGFRAAGR 834



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 147/368 (39%), Gaps = 42/368 (11%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           ++ A+   +EM      P       +++ + KA ++D ++++++EM   G  P+   Y +
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 381 LIESYAKAGKLDTALRLWDEMRIAG----------------------------------F 406
           +I   A   K+D A + ++ M   G                                  F
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF 120

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
           RP+  L+T +I  + K+G LD    I  +M  AG +P  + Y  L++     G+VD A +
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYE 180

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI- 525
           L+  M  +G      T+  L+  L+    +D A ++  EM   GY   +   D L+  + 
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALC 240

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           K G VD A    + + +  + T+      L +   K    +    LL   VE     D+ 
Sbjct: 241 KAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQ 300

Query: 586 LYTSVLAHLVRCQDEQNERHLMAILSATKHKAHA-----FLCGLFTGPEQRKQPVLSFVR 640
            Y  ++A   R     +   L  +LS+   K +A      + GL+    QR +   +F  
Sbjct: 301 TYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDA--QRMEEAKAFFD 358

Query: 641 EFFHGIDY 648
           E    I Y
Sbjct: 359 EALDVISY 366



 Score = 44.3 bits (103), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 11/148 (7%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           +D + SLF+    +    P    Y +L D L ++       S F EM+    +  I    
Sbjct: 694 TDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMI---DRGIIPECH 750

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI----DTQSYNVLMTLFLNKGLPYKAFEI 292
            Y  +I  LAKA ++  +    KK+++   K+    D Q+Y+ L+T  ++  +   A+++
Sbjct: 751 TYTSLIYSLAKAGRIPEA----KKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDV 806

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGR 320
           ++ M K  C+ +  TY+++      +GR
Sbjct: 807 FQEMMKRGCAPNEVTYKVLRRGFRAAGR 834


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 171/364 (46%), Gaps = 2/364 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           + N +I  L + + ++ +   + K+     + D  ++  L+    N+G    A E+Y  M
Sbjct: 130 SLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEM 189

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D  +Y  +I  L  SG  + A+ +F++M++   +P+   + +++DS+ K   +
Sbjct: 190 VRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLV 249

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +M    EM G G  P A  Y S++      G+L+ A RL+  M   G +P+   + +I
Sbjct: 250 NDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNII 309

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+S  K   ++ A    ++M   G  P   TY+ +L      GQ++ A++L+  M   G 
Sbjct: 310 IDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGC 369

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +P +  Y  ++  L K +LV+ A + L EM   G   + V+ S +L  +   G +D A +
Sbjct: 370 KPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQ 429

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHL 594
             + M    +  N      L +   +  +   A+ + ET  E   + ++  Y +++  + 
Sbjct: 430 LFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYC 489

Query: 595 VRCQ 598
           +RC+
Sbjct: 490 LRCK 493



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/445 (22%), Positives = 198/445 (44%), Gaps = 11/445 (2%)

Query: 173 VINDSDTSLSLFRWAK-RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           + N  +T++++  + K  Q+   P    Y  + D L + R  +  +    EMV      G
Sbjct: 208 LCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMV----GRG 263

Query: 232 ISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
           I   +  YN ++  L    +L  +   FK++  + CK D  +YN+++       L   A 
Sbjct: 264 IPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAA 323

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           +    M       D  TY  ++  L   G+L+ AI+LF++M+++  +P    + +++DS+
Sbjct: 324 DFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSL 383

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K   ++ +M+   EM   G  P+A  Y +++  +   G+LD A +L+ EM      PN 
Sbjct: 384 CKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNT 443

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             F+++++   + G +  A  +F  M   G  P   TY+ L+  +    +++ A K++  
Sbjct: 444 LTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEI 503

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM---VYIKD 527
           M   G  P L +Y  L+      + +D A  +L +M     + +    + +M    Y+  
Sbjct: 504 MVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYV-- 561

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           G +  A    + M SSG+         L     K+   + A  L ++  E   + D++LY
Sbjct: 562 GRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILY 621

Query: 588 TSVLAHLVRCQDEQNERHLMAILSA 612
           T ++  +      +  + L + LSA
Sbjct: 622 TILIEGMFIGGKLEVAKGLFSKLSA 646



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 177/406 (43%), Gaps = 11/406 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           I   L  +   + +  LF+  + Q+   P    Y ++ D L + R  +       EMV  
Sbjct: 274 IVHGLCCLGQLNEATRLFKRME-QNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQ 332

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
                +     Y  ++  L    +L  +   FKK+    CK D  +YN ++       L 
Sbjct: 333 GIPPDVV---TYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLV 389

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
             A E    M       +  TY  ++      G+LD A +LF+EM  RN  P+   F+ L
Sbjct: 390 NDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSIL 449

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           VD + + G +  +  V+  M   G  P+   Y +L+  Y    K++ A ++++ M   G 
Sbjct: 450 VDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGC 509

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P+   + ++I  +  S ++D A ++ T M      P   TY+ +++     G++  A +
Sbjct: 510 APDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQE 569

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM--VY 524
           L+  M S+G+ P L TY+ LL  L K   +D A K+   MK      D+    +L+  ++
Sbjct: 570 LFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMF 629

Query: 525 IKDGSVDHALRWLRFMGSSGI----RTNNFIVRQLFESCMKNALYE 566
           I  G ++ A      + + GI    RT N +++ L +  + +  YE
Sbjct: 630 I-GGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYE 674



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 138/306 (45%), Gaps = 3/306 (0%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + L++EMV    +  +    +YN +I  L  +    M+   FKK+  + CK +  +YN +
Sbjct: 183 VELYNEMVRSGHEPDVI---SYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTI 239

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +       L   A +    M       D  TY  ++  L   G+L+ A +LF+ M++   
Sbjct: 240 IDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGC 299

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P    +  ++DS+ K   ++ +     EM   G  P    Y +++      G+L+ A+R
Sbjct: 300 KPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIR 359

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+ +M   G +P+   +  II+S  K   ++ AM   ++M   G  P   TYS +L    
Sbjct: 360 LFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFC 419

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           + GQ+D A +L+  M    + P   T++ L+  L +  +V  A  +   M   G   ++ 
Sbjct: 420 NLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIY 479

Query: 517 ASDVLM 522
             + LM
Sbjct: 480 TYNALM 485



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 165/387 (42%), Gaps = 17/387 (4%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +  +I  +    K++++   + +++ S  + D  SYN L+    N G    A  +++ M
Sbjct: 165 TFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKM 224

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+  C  +  TY  +I SL K   ++ A+    EM  R   P    + S+V  +   G+L
Sbjct: 225 EQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQL 284

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + +++  M+  G +P    Y  +I+S  K   ++ A     EM   G  P+   +T I
Sbjct: 285 NEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTI 344

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +      G+L+ A+ +F  ME+ G  P    Y+ +++       V+ AM+  + M   G+
Sbjct: 345 LHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGI 404

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEM-------KTMGYSVDVSASDVLMVYIKDGS 529
            P   TY+ +L        +D A ++  EM        T+ +S+ V          ++G 
Sbjct: 405 PPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDG------LCQEGM 458

Query: 530 VDHALRWL-RFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLY 587
           V  A RW+   M   G+  N +    L    C++  + E A+ + E  V      DL  Y
Sbjct: 459 VSEA-RWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNE-ARKVFEIMVGKGCAPDLHSY 516

Query: 588 TSVLAHLVRCQDEQNERHLMAILSATK 614
             ++      +     + L+  +S  K
Sbjct: 517 NILINGYCNSRRMDKAKALLTQMSVKK 543



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 1/275 (0%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +D A+  F  M   N RPS   F   + S+ K  +  T + +  +M   G   +      
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI    +   +D A+ +W +M   G +P+   FT +I      GK+ +A+ ++ +M R+G
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG 193

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   +Y+ L+    +SG  + A+ ++  M   G +P + TY  ++  L K +LV+ A 
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAM 253

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
             L EM   G   D ++ + ++      G ++ A R  + M  +G + +      + +S 
Sbjct: 254 DFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSL 313

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            K+ L   A   L   V+     D+V YT++L  L
Sbjct: 314 YKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGL 348



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 3/256 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            D    LF EMV    +N +     ++ ++  L +   +  +   F+ + +   + +  +
Sbjct: 424 LDEATQLFKEMV---GRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYT 480

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN LM  +  +    +A +++E M    C+ D  +Y ++I     S R+D A  L  +M 
Sbjct: 481 YNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMS 540

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
            +   P+   + +++  +   GRL  + +++ +M   G  P+   Y  L+    K G LD
Sbjct: 541 VKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLD 600

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            AL+L+  M+     P+  L+T++IE     GKL++A  +F+ +   G  P   TY+ ++
Sbjct: 601 EALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMI 660

Query: 453 EMHASSGQVDSAMKLY 468
           +     G  D A +L+
Sbjct: 661 KGLLKEGLSDEAYELF 676



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/348 (19%), Positives = 160/348 (45%), Gaps = 6/348 (1%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           I   L  +   + ++ LF+  +++    P    Y  + D L + R  +  +    EMV  
Sbjct: 344 ILHGLCYLGQLNEAIRLFKKMEQKGCK-PDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDR 402

Query: 227 S-SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
               N ++    Y+ ++       +L+ +   FK+++  +   +T ++++L+     +G+
Sbjct: 403 GIPPNAVT----YSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGM 458

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +A  ++E+M +     +  TY  ++       +++ A K+F+ M  +   P  + +  
Sbjct: 459 VSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNI 518

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L++    + R+D +  +  +M      P+   Y ++++     G+L  A  L+ +M  +G
Sbjct: 519 LINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSG 578

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             P    +++++    K G LD A+ +F  M+     P    Y+ L+E     G+++ A 
Sbjct: 579 MLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAK 638

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            L++ +++ G++P   TY  ++  L K  L D A ++  + K M ++V
Sbjct: 639 GLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMKHNV 686


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 172/392 (43%), Gaps = 4/392 (1%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           ML     E +  D     FD M     K  +     +N ++    K ++ E  +  + ++
Sbjct: 171 MLIRACCELKRGDDAFECFDMM---KEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEM 227

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
                K    ++N+++ +   +G   KA +   SME      +  TY  +I      GR+
Sbjct: 228 FRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRV 287

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           + A  +   MK R   P    + SL+  M K G+L+ +  +  +M+  G  P+A  Y +L
Sbjct: 288 EGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTL 347

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I+ Y   G L  A    DEM      P    + ++I +    GK+D A  +  DM  +G 
Sbjct: 348 IDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGI 407

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +P   TY+ L+  +   G    A  L++ M S G++P L TYT+L+ +L+KR  +  A  
Sbjct: 408 VPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADD 467

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +  ++   G S D+   + L+  +  +G++D A   L+ M    I  +      L +   
Sbjct: 468 LFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRC 527

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           +    E A+ LL+       + D + Y ++++
Sbjct: 528 REGKVEEARELLKEMKRRGIRPDHISYNTLIS 559



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 163/342 (47%), Gaps = 3/342 (0%)

Query: 223 MVHDSSKN-GISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           MV D  KN G+   S  Y  +I  + K  KLE +    +K+ +        +YN L+  +
Sbjct: 292 MVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGY 351

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
            NKG   KAF   + M +       STY L+I +L   G++D A  + ++M +    P  
Sbjct: 352 CNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDS 411

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             +  L++   + G    +  ++ EM   G +P+   Y SLI   +K  ++  A  L+++
Sbjct: 412 ITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEK 471

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           +   G  P+  +F  +I+ H  +G LD A ++  +M++   +P   TY+ L++     G+
Sbjct: 472 IIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGK 531

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           V+ A +L   M   G+RP   +Y  L++  +KR  ++ A  I  EM ++G++  +   + 
Sbjct: 532 VEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNA 591

Query: 521 LMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
           L+  + K+   D A   L+ M S GI  ++     L E   K
Sbjct: 592 LIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGK 633



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 162/388 (41%), Gaps = 22/388 (5%)

Query: 320 RLDAAIKLFQEM---KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           R+     +F E+   ++R    S  +F  L+ +  +  R D + + +  M+  G  P   
Sbjct: 143 RVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIE 202

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            + +++  + K  + +T   L+ EM     +     F ++I    K GKL  A      M
Sbjct: 203 TFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSM 262

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           E  G  P   TY+ ++  + S G+V+ A  + + M + G+ P   TY +L++ + K   +
Sbjct: 263 ENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKL 322

Query: 497 DVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI----RTNNFI 551
           + A+ IL +MK +G     V+ + ++  Y   G +  A  +   M    I     T N +
Sbjct: 323 EEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLL 382

Query: 552 VRQLF-ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM-AI 609
           +  LF E  M     + A  +++   +S    D + Y  ++    RC + +   +L   +
Sbjct: 383 IHALFLEGKM-----DEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEM 437

Query: 610 LSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV--NVLLNYLV 667
           +S            L     +R +  +    + F  I   + EGA+   +  N L++   
Sbjct: 438 ISKGIQPTLVTYTSLIYVLSKRNR--MKAADDLFEKI---IREGASPDLIMFNALIDGHC 492

Query: 668 LMGQINRARCVWKVAYENKLFPKAIVFD 695
             G ++RA  + K   +  + P  + ++
Sbjct: 493 ANGNLDRAFALLKEMDKRNIVPDEVTYN 520


>gi|356557985|ref|XP_003547290.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 692

 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 220/519 (42%), Gaps = 82/519 (15%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +   VL ESRDF+G   LFDEM                                    
Sbjct: 159 YNVTLKVLRESRDFEGAEKLFDEM------------------------------------ 182

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
             L    K D  +++ L+      GLP KA E++E M    C  DG T   M+ + A++ 
Sbjct: 183 --LQRGVKPDNITFSTLVNCASVSGLPNKAVELFEKMSGFGCEPDGITCSGMVYAYARTN 240

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            +D A+ L+   K  N+      F++L+     AG  D  ++VY EM+  G +P+   Y 
Sbjct: 241 NVDKAVNLYDRAKAENWSLDAVTFSTLIKMYSMAGNYDKCLEVYQEMKVLGVKPNVATYN 300

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +L+ +  ++ K   A  +  EM+  G  P+F  +  ++E + ++   + A+ ++ +M+  
Sbjct: 301 TLLGAMLRSKKHRQAKAIHKEMKSNGVSPDFITYASLLEVYTRAQCSEDALGVYKEMKGN 360

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-LRPGLSTYTALLTLLAKRKLVDV 498
           G   T   Y+ LL M A  G  D A++++  M S+G  +P   T+++L+T+ ++   V  
Sbjct: 361 GMDMTADLYNKLLAMCADVGYTDRAVEIFYEMKSSGTCQPDSWTFSSLITIYSRSGKVSE 420

Query: 499 AAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
              +L EM   G+   +   + ++  Y K    D  ++  + +   GI  N+      F 
Sbjct: 421 VEGMLNEMIQSGFQPTIFVMTSLIRCYGKAKRTDDVVKIFKQLLDLGIVPNDH-----FC 475

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA 617
            C+ N L ++ K  L    +   K +  L T V+ +LV  Q+                  
Sbjct: 476 CCLLNVLTQTPKEELGKLTDCIEKANTKLGT-VVRYLVEEQESD---------------- 518

Query: 618 HAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARC 677
             F          RK+ +     E  + ID E++    +   N L++  V +    RA  
Sbjct: 519 EGF----------RKETL-----ELLNSIDAEVK----KPLCNCLIDLCVKLNVPERACG 559

Query: 678 VWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAV 716
           +  +    +++ K I       WSL ++ LSVGAA+ A+
Sbjct: 560 LLDLGLMLEIY-KNIQSKSQTQWSLHLKELSVGAAMTAL 597



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 108/236 (45%), Gaps = 5/236 (2%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           N+ D +++L+  AK ++W +     +  L  + + + ++D  L ++ EM     K  ++ 
Sbjct: 240 NNVDKAVNLYDRAKAENWSLDA-VTFSTLIKMYSMAGNYDKCLEVYQEMKVLGVKPNVA- 297

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              YN ++  + ++ K   +    K++  +    D  +Y  L+ ++        A  +Y+
Sbjct: 298 --TYNTLLGAMLRSKKHRQAKAIHKEMKSNGVSPDFITYASLLEVYTRAQCSEDALGVYK 355

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKA 353
            M+     +    Y  ++   A  G  D A+++F EMK     +P    F+SL+    ++
Sbjct: 356 EMKGNGMDMTADLYNKLLAMCADVGYTDRAVEIFYEMKSSGTCQPDSWTFSSLITIYSRS 415

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           G++     +  EM   G +P+  +  SLI  Y KA + D  ++++ ++   G  PN
Sbjct: 416 GKVSEVEGMLNEMIQSGFQPTIFVMTSLIRCYGKAKRTDDVVKIFKQLLDLGIVPN 471


>gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
 gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana]
          Length = 777

 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/481 (23%), Positives = 218/481 (45%), Gaps = 43/481 (8%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K+  LE S   F ++L+   K D  ++  +++     G+P +A E +E M 
Sbjct: 253 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMS 312

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  D  T   MI +  ++G +D A+ L+   +   +R     F++L+   G +G  D
Sbjct: 313 SFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYD 372

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + +Y EM+  G +P+  +Y  LI+S  +A +   A  ++ ++   GF PN+  +  ++
Sbjct: 373 GCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 432

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GL 476
            ++ ++   D A++I+ +M+  G   T   Y+ LL M A +  VD A +++  M +    
Sbjct: 433 RAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETC 492

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P   T+++L+T+ A    V  A   LL+++  G+   +   + V+  Y K   VD  +R
Sbjct: 493 DPDSWTFSSLITVYACSGRVSKAEAALLQIREAGFEPTLFVLTSVIQCYGKAKQVDDVVR 552

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   GI  ++      F  C+ N + ++    +   +    K    L   V+  LV
Sbjct: 553 TFDQVLELGITPDD-----RFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKL-GQVVKMLV 606

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
              +EQN                    G+F     +K+       E    I  ++++   
Sbjct: 607 ---EEQNCEE-----------------GVF-----KKE-----ASELIDSIGSDVKKA-- 634

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
             ++N L++  V + ++ RA  + ++  E  ++   +       WSL +++LS+GAAL A
Sbjct: 635 --YLNCLIDLCVNLNKLERACEILQLGLEYDIY-TGLQSKSATQWSLHLKSLSLGAALTA 691

Query: 716 V 716
           +
Sbjct: 692 L 692



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 127/292 (43%), Gaps = 40/292 (13%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           M  +  A     + D +LSL+  A+ + W +     +  L  +   S ++DG L++++EM
Sbjct: 323 MAAMIDAYGRAGNVDMALSLYDRARTEKWRIDA-VTFSTLIRIYGVSGNYDGCLNIYEEM 381

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
                K  + +   YNR+I  + +A +                                 
Sbjct: 382 KALGVKPNLVI---YNRLIDSMGRAKR--------------------------------- 405

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
             P++A  IY+ +     + + STY  ++ +  ++   D A+ +++EMKE+    +  ++
Sbjct: 406 --PWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILY 463

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
            +L+        +D + +++ +M+ C    P +  + SLI  YA +G++  A     ++R
Sbjct: 464 NTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSKAEAALLQIR 523

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            AGF P   + T +I+ + K+ ++D  +  F  +   G  P      CLL +
Sbjct: 524 EAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNV 575



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%)

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y   ++ + K+  L+ + +L+DEM   G +P+   FT II    ++G    A+  F  M
Sbjct: 252 LYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM 311

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   T + +++ +  +G VD A+ LY+   +   R    T++ L+ +       
Sbjct: 312 SSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 371

Query: 497 DVAAKILLEMKTMG 510
           D    I  EMK +G
Sbjct: 372 DGCLNIYEEMKALG 385


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 171/361 (47%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +++ LAK+ + +  Y  +  +L + C  +T +Y  L+          +A  ++  M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               CS +  +Y ++I  L +  ++D A +L  EM +   +P+   + SL+  + K G+L
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ ++  M   G  P   +Y  LI+ ++K G +  A RL++EM   G  P    +  +
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +   ++ G+     S+F DM R G +P   T++ LL+     G +  A +L+  M S G 
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P + +Y  L+  +  +     A ++L EM   G   D+ + ++L+  Y K G++DHA++
Sbjct: 259 PPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIK 318

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +  SG+  + F    + +   +     +A  + +  + + +  D  +   ++  L 
Sbjct: 319 LFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLC 378

Query: 596 R 596
           R
Sbjct: 379 R 379



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 150/328 (45%), Gaps = 1/328 (0%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           T SYN L+ +    G     +  Y  M    C  +  TY  ++ SL ++ R + A  +F+
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
            M  +   P+   ++ L+  + +  ++D + ++  EM   GH+P+   Y SL+    K G
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           KL  A+ L+  M   G  P+  ++ ++I+  +K G +  A  +F +M   G +PT  TY+
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            LL   +  G+      L+  M   G  P + T+  LL    K   +  A ++ LEM+++
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL 256

Query: 510 GYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G   DV + + LM  +   G    A R LR M  SG+  +      L +   K+   + A
Sbjct: 257 GCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHA 316

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L     +S  + D   Y++++  L R
Sbjct: 317 IKLFYEIPKSGLEPDAFSYSTIIDCLCR 344



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 160/376 (42%), Gaps = 39/376 (10%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           S+FR    Q    P    Y +L   L   +  D    L +EM+    +  +     Y  +
Sbjct: 73  SVFRGMAAQGC-SPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVV---TYGSL 128

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           +  L K  KL+ +   F +++   C  D   YNVL+  F  KG   +A+ ++E M +  C
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
                TY  ++   ++ G       LF++M  +   P+   F +L+D   K G +  + +
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR 248

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           +++EM+  G  P    Y +L+      GK   A RL  EM  +G  P+   + ++I+ ++
Sbjct: 249 LFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYS 308

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-- 479
           KSG LD A+ +F ++ ++G  P   +YS +++    +G+V +A  ++  M + G  P   
Sbjct: 309 KSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAA 368

Query: 480 ---------------------------------LSTYTALLTLLAKRKLVDVAAKILLEM 506
                                            +  Y  L+  L K K  D   +I  E+
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHEL 428

Query: 507 KTMGYSVDVSASDVLM 522
              G+S DV  S V++
Sbjct: 429 TERGFSPDVEISKVIL 444



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/399 (20%), Positives = 163/399 (40%), Gaps = 22/399 (5%)

Query: 98  ESGSVIYTGKGIRSVEPG-FDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWG---PELET 153
           E    ++ G   +   P  F   +++ G+ +       V +  E++N    G   P + T
Sbjct: 69  EEARSVFRGMAAQGCSPNVFSYSILIAGLCR----GQKVDEAAELLNEMIDGGHQPNVVT 124

Query: 154 QLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213
               L  + KM  + +A+ +      S  ++R         P    Y +L D  ++  D 
Sbjct: 125 YGSLLSGLCKMGKLKEAVDLF-----SRMVYRGCP------PDGVVYNVLIDGFSKKGDM 173

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
                LF+EM+    K  I     YN ++   ++  +       FK +L   C  +  ++
Sbjct: 174 GEAYRLFEEMLE---KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTF 230

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N L+  F   G   +A  ++  M    C  D  +Y  ++  +   G+   A +L +EM  
Sbjct: 231 NNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIR 290

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    +  L+D   K+G LD ++K++ E+   G  P A  Y ++I+   +AGK+  
Sbjct: 291 SGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGA 350

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  ++ +M   G  P+  +   ++    +  +L  +  +F  M +   +P    Y+ L+ 
Sbjct: 351 AFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMY 410

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
               + + D   ++++ +T  G  P +     +L  L +
Sbjct: 411 KLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRR 449



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 3/265 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L    +   +F  + SLF +M+       I  F   N ++    K   +  ++  F 
Sbjct: 195 YNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTF---NNLLDGFCKMGDMVEAHRLFL 251

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++    C  D  SYN LM    +KG P++A  +   M +     D  +Y ++I   +KSG
Sbjct: 252 EMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSG 311

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            LD AIKLF E+ +    P    +++++D + +AG++  +  V+ +M   G  P A + +
Sbjct: 312 ALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVI 371

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            L+    +  +L  +  L+  M      P    + +++    K+ + D    IF ++   
Sbjct: 372 PLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTER 431

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSA 464
           GF P       +LE    S   ++A
Sbjct: 432 GFSPDVEISKVILETLRRSDDKEAA 456


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 151/332 (45%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L  FR ++   ++VP D C  +L D L + + F  +   + E++       +  F   N
Sbjct: 85  ALECFRLSREHKFWVPFDTCRKVL-DHLMKLKYFKLVWGFYKEILECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     K    S+N LM  ++  G+  + F +  +M   
Sbjct: 141 ILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM E+   P+   F +L+D   K G+LD +
Sbjct: 201 GAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y ++   G  P    Y +LI  + K G L     L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M           Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
             TYT ++    K   V+  +K+L EM+  G+
Sbjct: 381 SGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGH 412



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 150/348 (43%), Gaps = 1/348 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E +    + +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G +PS   + +L+  Y K 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKM 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G++D AM++Y  + S GL P L TY  L+    K+  +     ++ EM  
Sbjct: 245 TTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++ +   L     K      
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           A+ +L   +    K D   YT V+    +  D      L+  +    H
Sbjct: 365 AEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGH 412



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 141/311 (45%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+ +L K    ++ +  +K++L+         +N+LM  F  +G    A  +++
Sbjct: 101 FDTCRKVLDHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        ++  ++    K G LD   +L   M     +P    ++ L++ + K  
Sbjct: 161 AITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKES 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K GKLD A+ ++ ++   G  P+   + 
Sbjct: 221 KMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L     +  +M   G  P   TY+ L++     G +++A +    M   
Sbjct: 281 TLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L K      A K+L EM ++G   D     ++M  + K+G V+  
Sbjct: 341 NIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTG 400

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 401 SKLLKEMQRDG 411


>gi|168024390|ref|XP_001764719.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684013|gb|EDQ70418.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1020

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 196/422 (46%), Gaps = 9/422 (2%)

Query: 154 QLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213
           +LDKL  +   V+ ++  +V     T    F +AK    Y      Y ML  V   ++D 
Sbjct: 266 KLDKLSLM--KVNHSKFYEVCKTKGTVEDAFTFAKIMRVYSTLQH-YTMLLSVCCHAKDI 322

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           DG L +   +V         +F  Y  +I   +KA K+++ +    ++  +  + +  ++
Sbjct: 323 DGALRVL-ALVESRGFKADCVF--YTTLISACSKAGKVDLLFQILHEMDVAGVEANVHTF 379

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
             ++      G   KAF  Y  M   +   D   +  +I + ++ G +  A  +  +MK 
Sbjct: 380 GAMIDGCARAGQLPKAFGAYGIMISKDVKPDRVIFNTLINACSRVGAVQRAFDVLADMKS 439

Query: 334 RN--FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
                +P    + +L+ +  K G +  +++VY  M+    +     Y + + + ++ G L
Sbjct: 440 EATPVKPDHVTYGALISACAKGGEVGRALEVYQSMRENDVKGFLACYTAAVHACSQKGDL 499

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D AL ++D++   G +P+   F+ ++++   SG +D A SI   M ++G  P    YS L
Sbjct: 500 DYALAIYDDLLKDGVKPDEVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSL 559

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + + ++ G+ +  +++Y  + S+ LRP +STY AL+T L + K  D A  +L ++K  G 
Sbjct: 560 MGVCSNLGEWEKGLEVYEGIRSSKLRPTVSTYNALMTALCEAKQFDRALSVLNDLKDAGR 619

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           + + VS S +L    ++G  D AL       + GI+ N  I   +   C++      A P
Sbjct: 620 TPNQVSYSILLKACEREGKADMALDLYTTARAEGIKPNLVICDSIIGLCLQQIQTSVAAP 679

Query: 571 LL 572
           L+
Sbjct: 680 LV 681



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/287 (19%), Positives = 121/287 (42%), Gaps = 36/287 (12%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y +++     +  +D A+++   ++ R F+     + +L+ +  KAG++D   ++  EM 
Sbjct: 309 YTMLLSVCCHAKDIDGALRVLALVESRGFKADCVFYTTLISACSKAGKVDLLFQILHEMD 368

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G   +   + ++I+  A+AG+L  A   +  M     +P+  +F  +I + ++ G + 
Sbjct: 369 VAGVEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKDVKPDRVIFNTLINACSRVGAVQ 428

Query: 428 IAMSIFTDM--ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
            A  +  DM  E     P   TY  L+   A  G+V  A+++Y SM    ++  L+ YTA
Sbjct: 429 RAFDVLADMKSEATPVKPDHVTYGALISACAKGGEVGRALEVYQSMRENDVKGFLACYTA 488

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
            +   +++                                  G +D+AL     +   G+
Sbjct: 489 AVHACSQK----------------------------------GDLDYALAIYDDLLKDGV 514

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           + +      L ++   +   + A  +L+   +S  K   V+Y+S++ 
Sbjct: 515 KPDEVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLMG 561


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 143/282 (50%), Gaps = 5/282 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  L+K  K++ +     K+++  C+ +T +Y+ ++   L  G    A  +   M 
Sbjct: 246 YSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMR 305

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  D  TY  +I    K  RL  A+ L +EM E  F PS   + +L   + ++GR D
Sbjct: 306 DAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFD 365

Query: 358 TSMKV--YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFT 414
            ++++  YM  +GC   P+A  Y S+++   KAG++  AL  +++M R     P+   ++
Sbjct: 366 EAVEILDYMAARGCA--PNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYS 423

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+   K+GK+D A      M RAG +P   T+S L+     +G++D+ ++L+  M   
Sbjct: 424 ALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAER 483

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           G  P + TY  L+  L +   VD A  +  +M++ G S D S
Sbjct: 484 GCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRS 525



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 138/290 (47%), Gaps = 6/290 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L D L++    D  L L  +MV    + N ++    Y+ V+  L K  ++E +    
Sbjct: 246 YSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVT----YSTVVDGLLKVGRMEDAVVVL 301

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +++ D+ C  D  +YN L+  F  +    +A  +   M +        TY  +   L +S
Sbjct: 302 RQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRS 361

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPM 377
           GR D A+++   M  R   P+   ++S+VD + KAGR+  ++  + +M +     P    
Sbjct: 362 GRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIA 421

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI+   KAGK+D A    + M  AG  P+   F+++I     +G++D  + +F  M 
Sbjct: 422 YSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMA 481

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             G +P   TY+ L++    + +VD A  L+  M S GL P  ST   ++
Sbjct: 482 ERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMI 531



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 138/290 (47%), Gaps = 4/290 (1%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           MI  L KS ++D AI LF++M ++   P    + +L+D +GK  R+  +  ++ E +  G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIA 429
             P+   Y ++I+   K G+++ AL L+D+M I  GFRP    ++ +I+   +  ++D  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             +  +M   G  P   TY+ L+      G+   A  L   M + G  P L T+  ++  
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 490 LAKRKLVDVAAKILLEMKTM--GYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
           L K   ++ A +++ EM  +  G S DV + + VL    K+  +  A    +     G R
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            N      L +   K A  + A  LL   VE   + + V Y++V+  L++
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLK 290



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 152/312 (48%), Gaps = 6/312 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKV--LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE- 294
           +  +I+ L K  ++E ++    ++  ++S    D  ++N ++     +     A  +++ 
Sbjct: 174 FGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKR 233

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++E+G C  +  TY  +I  L+K  ++D A++L  +M E   R +   ++++VD + K G
Sbjct: 234 ALERG-CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVG 292

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R++ ++ V  +M+  G  P A  Y +LI+ + K  +L  A+ L  EM  AGF P+   +T
Sbjct: 293 RMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYT 352

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT-S 473
            +     +SG+ D A+ I   M   G  P   TYS +++    +G+V  A+  +  M   
Sbjct: 353 TLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARD 412

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDH 532
             + P +  Y+AL+  L K   +D A + L  M   G   DV    +L+  + D G +D 
Sbjct: 413 EVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDT 472

Query: 533 ALRWLRFMGSSG 544
            L   R M   G
Sbjct: 473 GLELFRGMAERG 484



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 168/395 (42%), Gaps = 39/395 (9%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I  L K+ K++ +   FK+++D     D  +Y  L+     +    +A++++E      
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTS 359
           C     TY  MI  L K GR++ A+ L+ +M     FRP+   +++L+D + +   +D  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 360 MKVYMEMQGCGHRPSAPMYVSL-----------------------------------IES 384
            K+  EM G G  P+A  Y +L                                   I+ 
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 385 YAKAGKLDTALRLWDEMRI--AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
             K G+++ A R+ DEM +  +G  P+   F  +++   K  ++  A ++F      G  
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   TYS L++  +   ++D A++L   M   G R    TY+ ++  L K   ++ A  +
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 503 LLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
           L +M+  G   D    + L+  + K   +  A+  LR M  +G   +      L     +
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  ++ A  +L+         + + Y+S++  L +
Sbjct: 361 SGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCK 395



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 98/213 (46%), Gaps = 6/213 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKA 248
           ++ + P    Y  L   L  S  FD  + + D M     + N I+    Y+ ++  L KA
Sbjct: 341 EAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAIT----YSSIVDGLCKA 396

Query: 249 DKLEMSYCCFKKVL-DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
            ++  +   F+K+  D        +Y+ L+      G   +A+E  E M +     D  T
Sbjct: 397 GRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVT 456

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           + ++I  L  +GR+D  ++LF+ M ER   P    +A+LVD + +A R+D +  ++ +M+
Sbjct: 457 FSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMR 516

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             G  P      ++I    +  + + A R+ DE
Sbjct: 517 SDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 174/392 (44%), Gaps = 32/392 (8%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP---------- 286
           +YN VI  LA  DK++ +Y  F  ++D+ C+ D  ++  L+  F   G P          
Sbjct: 9   SYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQA 68

Query: 287 YKAFE----IYESMEKGEC-----------------SLDGSTYELMIPSLAKSGRLDAAI 325
            K F     +Y S+  G C                 SLD  +Y  +I  LA S R+D A 
Sbjct: 69  LKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEAC 128

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +LF+E+K     P+   + +++D + KAGR++  +K + EM G    P+   Y  +I+  
Sbjct: 129 ELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGL 188

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            KA  L  A +++++M   G  P+   +T +I+  +K+ K+D A  +   M   G  PT 
Sbjct: 189 CKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTA 248

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY  ++        ++ A ++   M   G  PGL  +T+LL+    +   + A ++L E
Sbjct: 249 VTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTE 308

Query: 506 MKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           M   G + DV   + ++ +    G V  A      M   G   +      + ++  K   
Sbjct: 309 MTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGN 368

Query: 565 YESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            E+A  +LE   +S    D   Y S++   V+
Sbjct: 369 VEAAGEILELMAKSGVGPDCFAYNSLMDGYVK 400



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 162/342 (47%), Gaps = 5/342 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  VI+ LA + +++ +   F+++  + C  +  +Y  ++   L  G      + +E M
Sbjct: 110 SYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEM 169

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C    +TY ++I  L K+  L  A K+F++M ++   P    + +L+D   KA ++
Sbjct: 170 SGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKM 229

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + K+   M   G  P+A  Y S++  + K   ++ A  +  +MR  G  P   +FT +
Sbjct: 230 DEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSL 289

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  +   G+ + A  + T+M   G  P    Y+ L+++  S+G+V  A  +++SM   G 
Sbjct: 290 LSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGC 349

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P   TY  ++   +K   V+ A +IL  M   G   D  A + LM  Y+K   VD A  
Sbjct: 350 APDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFG 409

Query: 536 WLRFMGSSGIRTN----NFIVRQLFESCMKNALYESAKPLLE 573
               M +SGI+ N    N ++  LF+    +  +   K +LE
Sbjct: 410 VYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLE 451



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 174/385 (45%), Gaps = 8/385 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q   VP    Y  L D  +++   D    L D M+   +K        Y  ++    K D
Sbjct: 206 QKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML---TKGPEPTAVTYGSIVHGFCKLD 262

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            +  +     ++ +  C+     +  L++ +L+KG   +A+++   M    C+ D   Y 
Sbjct: 263 MINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYT 322

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I  L  +GR+  A  +F  M E+   P    + +++ +  K G ++ + ++   M   
Sbjct: 323 SLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKS 382

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P    Y SL++ Y K  ++D A  ++D M  +G +PN   F +++    K GK D A
Sbjct: 383 GVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRA 442

Query: 430 MSIFTDM-ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
            S+F +M E+    PT  +Y+ L++    +G+V  A   +  M   G+ P   TYT+L+ 
Sbjct: 443 FSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIY 502

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRT 547
            LAK   +  A K++ +M  +G + DV A   L+  + D S VD A    + M   G   
Sbjct: 503 SLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAP 562

Query: 548 NNF---IVRQLFESCMKNALYESAK 569
           N     ++R+ F +  +    E+ K
Sbjct: 563 NEVTYKVLRRGFRAAGRALDLEAVK 587



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 153/346 (44%), Gaps = 13/346 (3%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C+    SYN +++   +     +A++ + SM    C  D   +  +I    K+G+     
Sbjct: 3   CEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGH 62

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM----YVSL 381
           KL  +  +R FRP   ++ S++    KAG LDT    Y         P A +    Y ++
Sbjct: 63  KLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTG---YFR----AVTPKASLDVISYTTV 114

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I+  A + ++D A  L++E++ AG  PN   +T +I+   K+G+++  +  F +M  +  
Sbjct: 115 IKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSC 174

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +PT +TY+ +++    +  +  A K++  M   G  P   TYT L+   +K   +D A K
Sbjct: 175 VPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARK 234

Query: 502 ILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +L  M T G     V+   ++  + K   ++ A   +  M   G     FI   L    +
Sbjct: 235 LLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYL 294

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
                E A  +L          D++LYTS++  L         RH+
Sbjct: 295 SKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHV 340



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 155/386 (40%), Gaps = 46/386 (11%)

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   Y ++I   A   K+D A + ++ M   G  P+   FT +I    K+G+  + 
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             +     +  F P    Y+ ++  +  +G +D+    Y    +      + +YT ++  
Sbjct: 62  HKLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTG---YFRAVTPKASLDVISYTTVIKG 117

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFM-GSSGIRT 547
           LA  K +D A ++  E+KT G S +V A + V+   +K G ++  L+    M GSS + T
Sbjct: 118 LADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPT 177

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
                  +   C    L ++ K + E  V+     D + YT+++    +       R L+
Sbjct: 178 RTTYTVVIDGLCKAQMLPDACK-VFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLL 236

Query: 608 AIL-------SATKHKA--HAFLCGLFTGPEQRKQPVLSFVRE---------FFHGIDYE 649
            ++       +A  + +  H F C L    E ++  V++ +RE         F   + Y 
Sbjct: 237 DVMLTKGPEPTAVTYGSIVHGF-CKLDMINEAKE--VIAQMRERGCEPGLFIFTSLLSYY 293

Query: 650 LEEGAARYFVNV------------------LLNYLVLMGQINRARCVWKVAYENKLFPKA 691
           L +G A     V                  L++ L   G++  AR V+    E    P A
Sbjct: 294 LSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 353

Query: 692 IVFDQHIAWSLDVRNLSVGAALIAVM 717
           + +   I     + N+     ++ +M
Sbjct: 354 LTYGTIIQNFSKIGNVEAAGEILELM 379


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 174/365 (47%), Gaps = 13/365 (3%)

Query: 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH----DSSKNGISLFS 236
           L+ F WA  Q  +    E Y       NE  DF G + +FD   +      ++N      
Sbjct: 78  LAFFNWASNQDGFRKSPEAY-------NEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVE 130

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +  +++   +A     +   F ++ D +CK D  ++++L+++   +    +A E ++S+
Sbjct: 131 TFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSL 190

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K +   D   Y  ++    ++G +  A ++F EMK    +P+   ++ ++DS+ + G++
Sbjct: 191 -KDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQI 249

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++ EM   G +P++  Y SL+  + KAG+ +  L+++++M+  G  P+   +  +
Sbjct: 250 TRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFL 309

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           IE+H K   L+ A+ +   M + G  P  ST++ L    A  G V++A ++Y  M     
Sbjct: 310 IETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNC 369

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
                TY  L+ +    K  D+  K+  EM       +V+   VL+ +Y   G  ++A +
Sbjct: 370 EANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYK 429

Query: 536 WLRFM 540
           + R M
Sbjct: 430 FFREM 434



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 106/245 (43%), Gaps = 36/245 (14%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ VI  L +  ++  ++  F ++LD+ C+ ++ +YN LM + +  G   K  ++Y  M
Sbjct: 235 TYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQM 294

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++  C  D  TY  +I +  K   L+ AIK+   M ++   P+ + F +L   + K G +
Sbjct: 295 KRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDV 354

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL---WDEMRIA--------- 404
           + + ++Y +M+      +   Y +L++ +  +   D  L+L    DE +I          
Sbjct: 355 NAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVL 414

Query: 405 ------------------------GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
                                     RP+  ++ M+++   K+G+L     +   M   G
Sbjct: 415 ITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAGQLKKHEELVEKMVDRG 474

Query: 441 FLPTP 445
           F+  P
Sbjct: 475 FVTRP 479


>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
 gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
          Length = 704

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 154/319 (48%), Gaps = 10/319 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS---AYNRVIQYLAKADKLEMSYC 256
           Y +   V  + RD +G   LF+EM++   K     FS   +  R+    +KA +      
Sbjct: 182 YNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFSTIISCARLCSLPSKAVEW----- 236

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            F+K+   DC  D  +Y+ ++  +   G    AF +Y+        +D +T+  MI    
Sbjct: 237 -FEKMPSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHG 295

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
            +G  D  + +++EMK    +P+  I+  L+D+MG+A R      +Y EM   G  PS  
Sbjct: 296 VAGNYDGCLNVYEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWA 355

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y SL+ +Y +A   + AL ++ EM+  G + N  L+  ++   A  G ++ A+ IF DM
Sbjct: 356 TYASLLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDM 415

Query: 437 ERAGFL-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           + +G   P   T+S ++ +++  G+V  A ++ N M  AG  P +   T+L+    K K 
Sbjct: 416 KSSGTCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKR 475

Query: 496 VDVAAKILLEMKTMGYSVD 514
           VD   +   ++  +G + D
Sbjct: 476 VDDVVRTFNQLIELGLTPD 494



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/518 (20%), Positives = 235/518 (45%), Gaps = 49/518 (9%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           +++ + ++ S+     L  F +M+  S +   ++F  YN  ++   K   +E +   F++
Sbjct: 150 ILVLNNMSNSQTALLALRYFQDMLKSSKQ---TIF--YNVTLKVFRKCRDMEGAEKLFEE 204

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +++   K D  +++ +++      LP KA E +E M   +C+ D  TY  MI +  ++G 
Sbjct: 205 MINRGVKPDNVTFSTIISCARLCSLPSKAVEWFEKMPSFDCNPDDVTYSTMIDAYGRAGN 264

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +D A  L+   +  N+R     F++++   G AG  D  + VY EM+  G +P+  +Y  
Sbjct: 265 VDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNC 324

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L+++  +A +      ++ EM   GF P++  +  ++ ++ ++   + A+ ++ +M+  G
Sbjct: 325 LLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEMKEKG 384

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-LRPGLSTYTALLTLLAKRKLVDVA 499
                  Y+ LL M A  G V+ A++++  M S+G   P   T+++++T+ +    V  A
Sbjct: 385 LQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIYSCGGKVSEA 444

Query: 500 AKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            ++L +M   G+  ++   + ++  Y K   VD  +R    +   G+  ++      F  
Sbjct: 445 EEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFNQLIELGLTPDD-----RFCG 499

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAH 618
           C+ N + ++ K                     L  L+ C    N +              
Sbjct: 500 CLLNVITQTPK-------------------GELGKLIDCVVRANPK-------------L 527

Query: 619 AFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCV 678
            F+  L  G + ++    +   E F  +  ++ +     + N L++  V +  +++A  +
Sbjct: 528 GFVVELLLGEQDKEGNFRTEASELFSVVSADVRKA----YCNCLIDLCVNLDLLDKACEL 583

Query: 679 WKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAV 716
             +    +++ K +       WSL ++ LS+GAAL A+
Sbjct: 584 LDLGLTLQIY-KDLQSRSPTQWSLYLKGLSLGAALTAL 620


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 122/594 (20%), Positives = 264/594 (44%), Gaps = 28/594 (4%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           S ++ ++ R+ K    +   DE    +  +L ++ + +  L  +D+ +  S+KN +++ +
Sbjct: 64  SASAKTIPRYTKWTPQFARVDE----VLKILQKTGNVEAALESWDKSL--SAKNIVTVLN 117

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             NR  + LA  + L+     ++        I+  +YNV++ +  N      + ++ E M
Sbjct: 118 NINRWEKALAFFEWLKARPELYE--------INRYTYNVMLKILRNGRQLELSEKLVEEM 169

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  T+  +I    +  + + A+K F+ MK     P    + S++D  G+ GR+
Sbjct: 170 TGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRV 229

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + ++++Y +++    +     Y ++   YA+AG   + ++L  EMR +G  PN  +   +
Sbjct: 230 NEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTL 289

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + + +K+GK++ A  +F +M  +G  PTP T S L+EM+   G  D A ++Y ++ + G 
Sbjct: 290 MGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGW 349

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +  ++ Y +L+    +   V+ A  IL EMK  G + D ++    +  Y   G VD A R
Sbjct: 350 KCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARR 409

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA-AKVDLVLYTSVLAHL 594
               + +   + +  +   +  +C      E A  + +  +ES     D  +   +L+ +
Sbjct: 410 MFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLLSCM 469

Query: 595 VRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQR-KQPVLSFVREFFHGIDYELEEG 653
              +++     ++  L       H  +  +    E R +  V   V +F    DY  E  
Sbjct: 470 AMAKNDDERLAILDCLDKFNAPLHELMSAIVRKEEPRSRDEVAEMVEKFIS--DYP-ETD 526

Query: 654 AARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
           + +   N L++    +G  + A  ++ +      +   +  +    W L++R LS+ AA 
Sbjct: 527 SRKPLCNCLIDICSSVGMKHAAHKIFAMGVAVGAY-DGLQTNLPSLWRLNLRTLSMPAAE 585

Query: 714 IAVMHTLHRFRKRMLYYGVVPRRI-------KLVTGPTLKIVIAQMLSSVESPF 760
            A+   +   +  +     +P  +       ++ +G  L  ++  +L  + +PF
Sbjct: 586 CAIEAWVSSLKAAVREGDELPEDLIIETGVGRVRSGQRLNPIVGTLLKKLGAPF 639


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 133/533 (24%), Positives = 223/533 (41%), Gaps = 38/533 (7%)

Query: 220  FDEMVH----DSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYN 274
            F E  H    D+ ++GI L     RVI   A    KL        K L     ID + +N
Sbjct: 725  FPETAHRLMDDALQSGIPLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQASGIDRRIWN 784

Query: 275  VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
             L+  +   GL  KA  ++++M K        +   M+ +L   GRLD    + +E+++ 
Sbjct: 785  ALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDM 844

Query: 335  NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
            NF+ S +    L+D+  KAG +   MK+Y  M+  G+ P+  +Y S+I       +    
Sbjct: 845  NFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDV 904

Query: 395  LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              +  EM  AGF+P+  +   ++  +  +G  D    ++  +  AG  P   TY+ L+ M
Sbjct: 905  ELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVM 964

Query: 455  HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
            +  S + +    L N M   GL P L +Y +LL   AK +L + A +I  EM++  Y ++
Sbjct: 965  YCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLN 1024

Query: 515  VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
             S   ++M +Y   G+   A   L  M   GI      +  L  S         A+ +L 
Sbjct: 1025 RSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLN 1084

Query: 574  TYVESAAKVDLVLYTSVLAHLVRCQ-------------------DEQNERHLMAILSATK 614
                S+ +V  + Y++V    ++                     D Q     +   S  +
Sbjct: 1085 NLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCE 1144

Query: 615  HKAHAFL-------CGLFTGP----EQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLL 663
              A A L       CG F  P     +R   +LS +  +   ++  LE+ AA  FVN + 
Sbjct: 1145 QTADAILLLKSLQDCG-FDLPIRLLTERTPSLLSEIANYLEELE-ALEDSAALNFVNAVE 1202

Query: 664  NYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAV 716
            + L        A  ++++A E  ++   +       W  D R LS GAAL+ +
Sbjct: 1203 DLLWAFECRATASRIFQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVGL 1255



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 170/356 (47%), Gaps = 6/356 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ESM 296
           YN +I   +++  LE +   F+ ++ S+C+ D  +YN ++++    G   +A  ++ E +
Sbjct: 296 YNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELV 355

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           EKG    D  TY  ++ + AK G +D      +++ +  F+ +   + +++   GK GRL
Sbjct: 356 EKGFMP-DAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRL 414

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ +Y EM+  G  P A  Y  +I+S  K  ++  A ++ ++M  AG +P    F+ +
Sbjct: 415 DLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSAL 474

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++AK G+   A + F  M  +G  P    Y  +L++ A SG  +  + LY  M +   
Sbjct: 475 ICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNY 534

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
           RP    Y  LL  LAK    +   +++ +M+ +     ++   +  + IK   V    + 
Sbjct: 535 RPDDDMYQVLLVALAKEDKCEEIEEVIQDMELL---CRMNLGIISTMLIKARCVSQGAKL 591

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA-KVDLVLYTSVL 591
           L+     G + +   +R +  + +    +E    LLE   E  +   DL+   S++
Sbjct: 592 LKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECICEHVSFSQDLISECSIM 647



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 149/323 (46%), Gaps = 17/323 (5%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           L D +++ R  D  L  F+ +++  SK+G             LA    L++ +    +V 
Sbjct: 243 LLDTMHD-RGIDPDLVSFNTLINARSKSGC------------LAAGVALDLLF----EVR 285

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
            S  + D  +YN L++          A  ++E M   EC  D  TY  M+    + G+ +
Sbjct: 286 QSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAE 345

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A +LF+E+ E+ F P    + SL+ +  K G +D       ++   G + +   Y ++I
Sbjct: 346 EAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMI 405

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
             Y K G+LD A+ L+DEMR  G  P+   +T++I+S  K  ++  A  +  DM  AG  
Sbjct: 406 HMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLK 465

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           PT   +S L+  +A  G+   A   ++ M ++G++P    Y  +L + A+    +    +
Sbjct: 466 PTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCL 525

Query: 503 LLEMKTMGYSVDVSASDVLMVYI 525
             +M    Y  D     VL+V +
Sbjct: 526 YRKMMNDNYRPDDDMYQVLLVAL 548



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 140/304 (46%), Gaps = 6/304 (1%)

Query: 304 DGSTYEL---MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL--DT 358
           +G+T ++   M+   A+SGR D A +L   M +R   P    F +L+++  K+G L    
Sbjct: 217 EGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGV 276

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++ +  E++  G RP    Y +LI + +++  L+ A+ ++++M  +  RP+   +  ++ 
Sbjct: 277 ALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVS 336

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
            H + GK + A  +F ++   GF+P   TY+ LL   A  G VD        +  AG + 
Sbjct: 337 VHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKK 396

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
              TY  ++ +  K   +D+A  +  EM+ MG + D     V++  + K   +  A + L
Sbjct: 397 NEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVL 456

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             M  +G++        L  +  K      A+   +  + S  K D + Y  +L    R 
Sbjct: 457 EDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARS 516

Query: 598 QDEQ 601
            D +
Sbjct: 517 GDTE 520



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 125/264 (47%), Gaps = 5/264 (1%)

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R+  P+    A ++  +G+A +   + +V++   G G   +  ++ +++  YA++G+ D 
Sbjct: 182 RSSAPASRAVAVVLGVLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDD 239

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL--DIAMSIFTDMERAGFLPTPSTYSCL 451
           A +L D M   G  P+   F  +I + +KSG L   +A+ +  ++ ++G  P   TY+ L
Sbjct: 240 ARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTL 299

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +   + S  ++ A+ ++  M ++  RP L TY A++++  +    + A ++  E+   G+
Sbjct: 300 ISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGF 359

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D ++ + +L  + K+G+VD        +  +G + N      +     K    + A  
Sbjct: 360 MPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVG 419

Query: 571 LLETYVESAAKVDLVLYTSVLAHL 594
           L +         D V YT ++  L
Sbjct: 420 LYDEMRAMGCTPDAVTYTVMIDSL 443



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/287 (17%), Positives = 127/287 (44%), Gaps = 3/287 (1%)

Query: 189  RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
            + + Y+P    Y  +  +L     F  +  +  EM     K  +++ +A   ++     A
Sbjct: 877  KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNA---LLNMYTAA 933

Query: 249  DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
               + +   ++ +L++  + D  +YN L+ ++     P + F +   M K   +    +Y
Sbjct: 934  GNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSY 993

Query: 309  ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            + ++ + AK+   + A ++F+EM+ ++++ + +I+  ++     AG    +  +   M+ 
Sbjct: 994  KSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKE 1053

Query: 369  CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
             G  P+      L+ SY  AG+   A  + + ++ +    +   ++ + +++ K+G  + 
Sbjct: 1054 DGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNH 1113

Query: 429  AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
              +   +M+R G  P    ++C +   +   Q   A+ L  S+   G
Sbjct: 1114 GTTKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDCG 1160


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 177/371 (47%), Gaps = 9/371 (2%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           S   F+WA     +      Y  +  +L ++R F+ M++L  EM     K G     A+ 
Sbjct: 221 SRRFFQWAAASDEFEHTPVTYCKMLHILGKARQFETMVALVQEM----GKAGALCMDAFK 276

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
             I+  A A +++ +   F+ +         +S+N L+     +GL  +A  +++ M + 
Sbjct: 277 IAIKSFAAAGEIKNAVGVFEMMRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRM-RD 335

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
           + + D  +Y  ++ +   +  L  A +++ +M E+  +P   +  +++D + +  R   +
Sbjct: 336 QYTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEA 395

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           +K++  M+  G  P+   Y  LI  + K GKLD A+R ++EM++AG +P    +T ++  
Sbjct: 396 VKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVG 455

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           +  + ++D   ++  +M + G  P   TY+ L+++  +    D A+++Y  M + GL P 
Sbjct: 456 YGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPT 515

Query: 480 LSTYTALLT--LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           + TY  ++    L  R    +   +  EM   G   DV++  V +  +I+ G    A ++
Sbjct: 516 IHTYNMMMKSYFLGGRNYA-MGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKF 574

Query: 537 LRFMGSSGIRT 547
           L  M   G++ 
Sbjct: 575 LEEMIQKGMKA 585



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 1/192 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I+   K  KL+M+  CF+++  + C+ +  +Y  L+  + N     +   + E M 
Sbjct: 414 YTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMA 473

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR-L 356
           +  C  DG TY  +I  L      D A++++++M  +   P+ + +  ++ S    GR  
Sbjct: 474 QKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNY 533

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
                V+ EM   G  P    Y   I  + + G+   A +  +EM   G +     +   
Sbjct: 534 AMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEEMIQKGMKAPQIDYNKF 593

Query: 417 IESHAKSGKLDI 428
               +K+GK DI
Sbjct: 594 AADFSKAGKPDI 605



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 15/282 (5%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY  M+  L K+ + +  + L QEM +       + F   + S   AG +  ++ V+  M
Sbjct: 240 TYCKMLHILGKARQFETMVALVQEMGKAGAL-CMDAFKIAIKSFAAAGEIKNAVGVFEMM 298

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G       +  L+ + A+ G    A R++D MR   + P+   +T ++ +   +  L
Sbjct: 299 RVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRMRDQ-YTPDLRSYTALMLAWCNARNL 357

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A  ++ DM   G  P    ++ +++      +   A+K++  M + G  P + TYT L
Sbjct: 358 VEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTML 417

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGI 545
           +    K+  +D+A +   EM+  G   +V+    L+V Y     +D     L  M   G 
Sbjct: 418 IRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGC 477

Query: 546 ----RTNNFIVRQLFESCM--------KNALYESAKPLLETY 575
               RT N +++ L    M        K  + +  +P + TY
Sbjct: 478 PPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTY 519



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/271 (18%), Positives = 110/271 (40%), Gaps = 4/271 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y P    Y  L      +R+      ++++M+    K  + +   +N +I  L +  +  
Sbjct: 337 YTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVV---HNTMIDGLLRGQRRP 393

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F+ +       +  +Y +L+     +G    A   +E M+   C  + +TY  ++
Sbjct: 394 EAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLL 453

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
                + R+D    + +EM ++   P    + +L+  +      D ++++Y +M   G  
Sbjct: 454 VGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLE 513

Query: 373 PSAPMYVSLIESYAKAGK-LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           P+   Y  +++SY   G+       +W+EM   G  P+   +T+ I  H + G+   A  
Sbjct: 514 PTIHTYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACK 573

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
              +M + G       Y+      + +G+ D
Sbjct: 574 FLEEMIQKGMKAPQIDYNKFAADFSKAGKPD 604



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 4/207 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ML     +    D  +  F+EM     +  ++ ++    ++ Y   A +++      +
Sbjct: 414 YTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCL--LVGY-GNAKRMDRVTAMLE 470

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++    C  D ++YN L+ L  N+ +P  A  IY+ M          TY +M+ S    G
Sbjct: 471 EMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGG 530

Query: 320 RLDA-AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           R  A    +++EM  +   P  N +   ++   + GR   + K   EM   G +     Y
Sbjct: 531 RNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEEMIQKGMKAPQIDY 590

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAG 405
                 ++KAGK D    L  +++  G
Sbjct: 591 NKFAADFSKAGKPDILYELAQKVKFTG 617


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 195/432 (45%), Gaps = 24/432 (5%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           P L    D     PK++H               SL+ WA  Q  + P    +  + + L 
Sbjct: 105 PLLHAVFDHFASSPKLLH---------------SLYLWALNQPGFKPDSSLFDSVINALA 149

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFS--AYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           + ++FD   SL  + +     +   L S   +  +I+  A+A   + +   F+   D   
Sbjct: 150 KMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAIRTFEFAKDKKS 209

Query: 267 KIDTQS----YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLAKSGR 320
            +D+ S    + +L+     +G   +A E     ++ +     S   Y +M+    ++ +
Sbjct: 210 IVDSVSEMSLFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIMLNGWFRARK 269

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L  A +L++EMK  N RPS   + +LV+   +  R++ ++++  EM   G +P+A +Y  
Sbjct: 270 LKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNP 329

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           +I++ A+AG+   AL + +   +    P    +  +++   K+G ++ A  I   M   G
Sbjct: 330 IIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRG 389

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           FLP P+TY+      +  G+VD  M LY  M  +G  P   TY  +L +L + + +++A 
Sbjct: 390 FLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAV 449

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++ +EM+  GY +D++ S +L  +  K   ++ A      M   GI       ++L    
Sbjct: 450 QVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKLNVEL 509

Query: 560 MKNALYESAKPL 571
            K  + E A+ L
Sbjct: 510 KKQGMNEMARKL 521



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 127/275 (46%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++    +A KL+ +   ++++ + + +    +Y  L+  +       KA E+   M 
Sbjct: 257 YNIMLNGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMT 316

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K     +   Y  +I +LA++GR   A+ + +        P+ + + SLV    KAG ++
Sbjct: 317 KEGIKPNAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIE 376

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + K+  +M   G  P    Y      +++ GK+D  + L+ +M  +G  P+   + +++
Sbjct: 377 GASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVL 436

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   +  KL++A+ +  +M   G+    +T + L  +     +++ A   +  M   G+ 
Sbjct: 437 KMLCEEEKLELAVQVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGII 496

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           P   T+  L   L K+ + ++A K+   M ++ YS
Sbjct: 497 PQYLTFQKLNVELKKQGMNEMARKLCHLMSSVPYS 531


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 206/500 (41%), Gaps = 52/500 (10%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+  ++   KA   + +   F+++   DC ++  +YNV+++     G   +AF   E M 
Sbjct: 248 YSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMV 307

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               S D  TY  ++  L K GRL  A  L  EM     +P+  ++A+LVD   K G+  
Sbjct: 308 DYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAA 367

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  +  EM   G +P+  MY +LI    K G+L  A +L +EM   G RP+   +  ++
Sbjct: 368 EAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLM 427

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           + H +    D A  +  +M  +G LP   TY  ++     +G+   A  L   M S GL+
Sbjct: 428 QGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLK 487

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEM-------------------KTMG-------Y 511
           P    Y  L+   +K   + +A + L  M                    T+G       Y
Sbjct: 488 PNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEY 547

Query: 512 SVDV----------SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
              V          + S ++  Y K  +++ A + L+ M +SG++ N      L E   K
Sbjct: 548 YAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFK 607

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK------- 614
           +  +E    +L++ + S  K D  +Y  V+ +L R   E  E   M +    K       
Sbjct: 608 SNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR--SENMEVAFMVLTEVEKNGLVPDL 665

Query: 615 HKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINR 674
           H   + + GL    +  K   +  + E        LE G   Y  N L++     G I+R
Sbjct: 666 HIYSSLISGLCKMADMEK--AVGLLDEM---AKEGLEPGIVCY--NALIDGFCRSGDISR 718

Query: 675 ARCVWKVAYENKLFPKAIVF 694
           AR V+       L P  + +
Sbjct: 719 ARNVFDSILAKGLLPNCVTY 738



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 130/300 (43%), Gaps = 1/300 (0%)

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME      D  TY   + +  K+   DAA K+F+EM+ R+   +   +  ++  + ++G 
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 295

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           ++ +     EM   G  P A  Y +L+    K G+L  A  L DEM  +G +PN  ++  
Sbjct: 296 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYAT 355

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++   K GK   A  I  +M  AG  P    Y  L+      GQ+  A KL N M   G
Sbjct: 356 LVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVG 415

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHAL 534
            RP   TY  L+    +    D A ++L EM+  G   +     +++  + ++G    A 
Sbjct: 416 HRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAG 475

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             L  M S G++ N F+   L     K      A   LE   ++    DL  Y S++  L
Sbjct: 476 NLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGL 535



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 147/345 (42%), Gaps = 3/345 (0%)

Query: 214 DGMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           +G +SL  E + + +K  +   LF  YN +I+ L+   ++E +   + +V       D  
Sbjct: 503 EGHISLACESLENMTKANVLPDLF-CYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEF 561

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y+ L+  +       KA ++ + M       +  TY  ++    KS   +    + Q M
Sbjct: 562 TYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSM 621

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
                +P  +I+  ++ ++ ++  ++ +  V  E++  G  P   +Y SLI    K   +
Sbjct: 622 LGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADM 681

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A+ L DEM   G  P    +  +I+   +SG +  A ++F  +   G LP   TY+ L
Sbjct: 682 EKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTAL 741

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++ +  +G +  A  LY  M   G+ P    Y  L T  +    ++ A  +  EM   GY
Sbjct: 742 IDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY 801

Query: 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
           +     S ++  + K G +    + L  M    I  N   V  + 
Sbjct: 802 AHVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVI 846



 Score = 89.4 bits (220), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 153/355 (43%), Gaps = 1/355 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I+ L K  +L  +     +++    + DT +Y+ LM           AFE+   M 
Sbjct: 388 YDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMR 447

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +  TY +MI  L ++G    A  L +EM     +P+  ++A L+    K G + 
Sbjct: 448 NSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHIS 507

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + +    M      P    Y SLI+  +  G+++ A   + +++  G  P+   ++ +I
Sbjct: 508 LACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLI 567

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K+  L+ A  +   M  +G  P   TY+ LLE +  S   +    +  SM  +G +
Sbjct: 568 HGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDK 627

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRW 536
           P    Y  ++  L++ + ++VA  +L E++  G   D+   S ++    K   ++ A+  
Sbjct: 628 PDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGL 687

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           L  M   G+         L +   ++     A+ + ++ +      + V YT+++
Sbjct: 688 LDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALI 742



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 137/329 (41%), Gaps = 4/329 (1%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y +++      G   +A  + E M       +   Y  +I   +K G +  A +  + M
Sbjct: 457 TYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENM 516

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            + N  P    + SL+  +   GR++ + + Y ++Q  G  P    Y  LI  Y K   L
Sbjct: 517 TKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNL 576

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A +L  +M  +G +PN   +T ++E + KS   +   SI   M  +G  P    Y  +
Sbjct: 577 EKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIV 636

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +   + S  ++ A  +   +   GL P L  Y++L++ L K   ++ A  +L EM   G 
Sbjct: 637 IRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGL 696

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
              +   + L+  + + G +  A      + + G+  N      L +   KN     A  
Sbjct: 697 EPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFD 756

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           L +  ++     D  +Y +VLA    C D
Sbjct: 757 LYKDMLDRGIAPDAFVY-NVLA--TGCSD 782



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 130/326 (39%), Gaps = 44/326 (13%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           +  ++++ +  K+G +  A ++   M +    P+      L+  + +A  ++   K+   
Sbjct: 176 AVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGF 235

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA--------------------- 404
           M+G G  P    Y + +E++ KA   D A ++++EMR                       
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 295

Query: 405 --------------GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
                         G  P+   +  ++    K G+L  A ++  +M  +G  P    Y+ 
Sbjct: 296 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYAT 355

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L++     G+   A  + N M SAG++P    Y  L+  L K   +  A+K+L EM  +G
Sbjct: 356 LVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVG 415

Query: 511 YSVDVSASDVLMV-----YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
           +  D      LM      Y KDG    A   L  M +SGI  N +    +     +N   
Sbjct: 416 HRPDTFTYHPLMQGHFQHYDKDG----AFELLNEMRNSGILPNAYTYGIMINGLCQNGES 471

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVL 591
           + A  LLE  +    K +  +Y  ++
Sbjct: 472 KEAGNLLEEMISEGLKPNAFMYAPLI 497



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 138/342 (40%), Gaps = 14/342 (4%)

Query: 133 SAVAKIVEVVNRWKWGPELETQLDKLQFVPK------MVHITQALKVINDSDTSLSLFRW 186
           +++ K +  V R +   E   Q+ K   VP       ++H     + +  +D  L     
Sbjct: 529 NSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQML- 587

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
               S   P  + Y  L +   +S D + + S+   M+    K    +   Y  VI+ L+
Sbjct: 588 ---NSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHI---YGIVIRNLS 641

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306
           +++ +E+++    +V  +    D   Y+ L++         KA  + + M K        
Sbjct: 642 RSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIV 701

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
            Y  +I    +SG +  A  +F  +  +   P+   + +L+D   K G +  +  +Y +M
Sbjct: 702 CYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDM 761

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G  P A +Y  L    + A  L+ AL L +EM   G+  +  LF+ ++    K G+L
Sbjct: 762 LDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY-AHVSLFSTLVRGFCKRGRL 820

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
                +   M     +P   T   ++     +G++  A +++
Sbjct: 821 QETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVF 862



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 19/255 (7%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
            ++  VP    Y  L   L +  D +  + L DEM  +  + GI     YN +I    ++
Sbjct: 657 EKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIV---CYNALIDGFCRS 713

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             +  +   F  +L      +  +Y  L+      G    AF++Y+ M     + D   Y
Sbjct: 714 GDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVY 773

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            ++    + +  L+ A+ L +EM  R +    ++F++LV    K GRL  + K+   M  
Sbjct: 774 NVLATGCSDAADLEQALFLTEEMFNRGY-AHVSLFSTLVRGFCKRGRLQETEKLLHVMMD 832

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
               P+A    ++I  + KAGKL  A R++ E++               +  A     D 
Sbjct: 833 REIVPNAQTVENVITEFGKAGKLCEAHRVFAELQ---------------QKKASQSSTDR 877

Query: 429 AMSIFTDMERAGFLP 443
              +FTDM   G +P
Sbjct: 878 FSLLFTDMINKGLIP 892


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 171/361 (47%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +++ LAK+ + +  Y  +  +L + C  +T +Y  L+          +A  ++  M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               CS +  +Y ++I  L +  ++D A +L  EM +   +P+   + SL+  + K G+L
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ ++  M   G  P   +Y  LI+ ++K G +  A RL++EM   G  P    +  +
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +   ++ G+     S+F DM R G +P   T++ LL+     G +  A +L+  M S G 
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P + +Y  L+  +  +     A ++L EM   G   D+ + ++L+  Y K G++DHA++
Sbjct: 259 PPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIK 318

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +  SG+  + F    + +   +     +A  + +  + + +  D  +   ++  L 
Sbjct: 319 LFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLC 378

Query: 596 R 596
           R
Sbjct: 379 R 379



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 1/328 (0%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           T SYN L+ +    G     +  Y  M    C  +  TY  ++ SL ++ R + A  +F+
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
            M  +   P+   ++ L+  + +  ++D + ++  EM   GH+P+   Y SL+    K G
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           KL  A+ L+  M   G  P+  ++ ++I+  +K G +  A  +F +M   G +PT  TY+
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            LL   +  G+      L+  M   G  P + T+  LL    K   +  A ++ LEM+++
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL 256

Query: 510 GYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G   DV + + L+  +   G    A R LR M  SG+  +      L +   K+   + A
Sbjct: 257 GCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHA 316

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L     +S  + D   Y++++  L R
Sbjct: 317 IKLFYEIPKSGLEPDAFSYSTIIDCLCR 344



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 160/376 (42%), Gaps = 39/376 (10%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           S+FR    Q    P    Y +L   L   +  D    L +EM+    +  +     Y  +
Sbjct: 73  SVFRGMAAQGC-SPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVV---TYGSL 128

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           +  L K  KL+ +   F +++   C  D   YNVL+  F  KG   +A+ ++E M +  C
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
                TY  ++   ++ G       LF++M  +   P+   F +L+D   K G +  + +
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR 248

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           +++EM+  G  P    Y +LI      GK   A RL  EM  +G  P+   + ++I+ ++
Sbjct: 249 LFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYS 308

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-- 479
           KSG LD A+ +F ++ ++G  P   +YS +++    +G+V +A  ++  M + G  P   
Sbjct: 309 KSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAA 368

Query: 480 ---------------------------------LSTYTALLTLLAKRKLVDVAAKILLEM 506
                                            +  Y  L+  L K K  D   +I  E+
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHEL 428

Query: 507 KTMGYSVDVSASDVLM 522
              G+S DV  S V++
Sbjct: 429 TERGFSPDVEISKVIL 444



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/406 (20%), Positives = 165/406 (40%), Gaps = 22/406 (5%)

Query: 98  ESGSVIYTGKGIRSVEPG-FDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWG---PELET 153
           E    ++ G   +   P  F   +++ G+ +       V +  E++N    G   P + T
Sbjct: 69  EEARSVFRGMAAQGCSPNVFSYSILIAGLCR----GQKVDEAAELLNEMIDGGHQPNVVT 124

Query: 154 QLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213
               L  + KM  + +A+ +      S  ++R         P    Y +L D  ++  D 
Sbjct: 125 YGSLLSGLCKMGKLKEAVDLF-----SRMVYRGCP------PDGVVYNVLIDGFSKKGDM 173

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
                LF+EM+    K  I     YN ++   ++  +       FK +L   C  +  ++
Sbjct: 174 GEAYRLFEEMLE---KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTF 230

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N L+  F   G   +A  ++  M    C  D  +Y  +I  +   G+   A +L +EM  
Sbjct: 231 NNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIR 290

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    +  L+D   K+G LD ++K++ E+   G  P A  Y ++I+   +AGK+  
Sbjct: 291 SGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGA 350

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  ++ +M   G  P+  +   ++    +  +L  +  +F  M +   +P    Y+ L+ 
Sbjct: 351 AFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMY 410

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
               + + D   ++++ +T  G  P +     +L  L +    D A
Sbjct: 411 KLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKDAA 456


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 174/362 (48%), Gaps = 1/362 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           VI  L  + +   +   F+++ ++  +  T++YN L+  ++  G    A  +   MEK  
Sbjct: 298 VILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAG 357

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              D  TY L+I + A +GR ++A  + +EM+  N  P+  +++ ++ S    G    S 
Sbjct: 358 VKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSF 417

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +V  +M+  G +P    Y  +I+++ K   LD A+  ++ M   G RP+   +  +I  H
Sbjct: 418 QVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCH 477

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            KSG+ ++A  +F +M++ G+ P  +TY+ ++       + +      + M S GL P  
Sbjct: 478 CKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNS 537

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRF 539
            TYT L+ +  K      A + L  +K+ G+    +  + L+  Y + G  + A+   R 
Sbjct: 538 ITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRL 597

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           M + G+  +   +  L  +  ++     A  +L+   E+  + D+V YT+++  L+R + 
Sbjct: 598 MTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEK 657

Query: 600 EQ 601
            Q
Sbjct: 658 FQ 659



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 174/401 (43%), Gaps = 16/401 (3%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC-- 256
            Y  L      + D +  L+L  +M  D  +     F  Y+ +IQYL +++K++      
Sbjct: 187 TYNALIGACARNGDVEKALNLMSKMRRDGYQPD---FVNYSSIIQYLTRSNKIDSPILQK 243

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            + ++     +ID    N ++  F   G P +A       +    +   ST   +I +L 
Sbjct: 244 LYTEIETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALG 303

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
            SGR   A  LF+E++E    P    + +L+    K G L  +  V  EM+  G +P   
Sbjct: 304 NSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQ 363

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y  LI++YA AG+ ++A  +  EM  +   PN  +++ I+ S+   G+   +  +  DM
Sbjct: 364 TYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDM 423

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +  G  P    Y+ +++       +D AM  +  M S G+RP   T+  L+    K    
Sbjct: 424 KSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRH 483

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW------LRFMGSSGIRTNNF 550
           ++A ++  EM+  GYS  ++  ++++      S+    RW      L  M S G+  N+ 
Sbjct: 484 NMAEELFGEMQQRGYSPCITTYNIMI-----NSMGEQQRWEQVSLFLSKMQSQGLLPNSI 538

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               L +   K+  +  A   LE    +  K    +Y +++
Sbjct: 539 TYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALI 579



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 167/367 (45%), Gaps = 4/367 (1%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +LF+E+  + S+       AYN +++   K   L+ +     ++  +  K D Q+Y++L+
Sbjct: 313 ALFEEIRENGSEPRTR---AYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLI 369

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             + + G    A  + + ME      +   Y  ++ S    G    + ++ ++MK    +
Sbjct: 370 DAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQ 429

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P  + +  ++D+ GK   LD +M  +  M   G RP    + +LI  + K+G+ + A  L
Sbjct: 430 PDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEEL 489

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           + EM+  G+ P    + ++I S  +  + +      + M+  G LP   TY+ L++++  
Sbjct: 490 FGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGK 549

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           SG+   A++    + S G +P  + Y AL+   A+R L ++A      M T G +  + A
Sbjct: 550 SGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLA 609

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            + L+  + +D     A   L++M  + I  +      L ++ ++   ++    + E  V
Sbjct: 610 LNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMV 669

Query: 577 ESAAKVD 583
            S    D
Sbjct: 670 TSGCTPD 676



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 143/327 (43%), Gaps = 3/327 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P ++ Y +L D    +  ++    +  EM    + N       Y+R++       + + S
Sbjct: 360 PDEQTYSLLIDAYAHAGRWESARIVLKEM---EASNVEPNSYVYSRILASYRDKGEWQKS 416

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +   K +  +  + D   YNV++  F        A   +E M       D  T+  +I  
Sbjct: 417 FQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINC 476

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             KSGR + A +LF EM++R + P    +  +++SMG+  R +       +MQ  G  P+
Sbjct: 477 HCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPN 536

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           +  Y +L++ Y K+G+   A+   + ++  GF+P   ++  +I ++A+ G  ++A++ F 
Sbjct: 537 SITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFR 596

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G  P+    + L+       +   A  +   M    + P + TYT L+  L + +
Sbjct: 597 LMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVE 656

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVL 521
                  +  EM T G + D  A  +L
Sbjct: 657 KFQKVPAVYEEMVTSGCTPDRKARAML 683



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 153/340 (45%), Gaps = 41/340 (12%)

Query: 272 SYNVLMTLFLNK-GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           SY +L ++ +N  G   K +E +   ++    L   TY  +I + A++G ++ A+ L  +
Sbjct: 153 SYELLYSILINALGRSEKLYEAFLLSQRQ--VLTPLTYNALIGACARNGDVEKALNLMSK 210

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSM--KVYMEM---------------------- 366
           M+   ++P F  ++S++  + ++ ++D+ +  K+Y E+                      
Sbjct: 211 MRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYTEIETDKIEIDGHLMNDIILGFSKA 270

Query: 367 -------------QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
                        Q  G  P     V++I +   +G+   A  L++E+R  G  P    +
Sbjct: 271 GDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAY 330

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +++ + K+G L  A  + ++ME+AG  P   TYS L++ +A +G+ +SA  +   M +
Sbjct: 331 NALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEA 390

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDH 532
           + + P    Y+ +L     +     + ++L +MK+ G   D    +V++  + K   +DH
Sbjct: 391 SNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDH 450

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           A+     M S GIR +      L     K+  +  A+ L 
Sbjct: 451 AMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELF 490


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 140/636 (22%), Positives = 267/636 (41%), Gaps = 61/636 (9%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCC 257
            +  L     +S  FD  + +F+ M     K  +     YN VI    K   + +     
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLV---TYNAVIDACGKGGVEFKRVVEI 280

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           F+++L +  + D  +YN L+ +    GL   A  ++  M       D  TY  ++ ++ K
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G++D A ++  EM  +   P+   ++++ D   KAGRL+ ++ +Y EM+  G       
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +L+  YAK G+ + AL++  EM  +G + +   +  +++ + K GK +    +F +M+
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           +    P   TYS L+++++     + AM+++     AGL+  +  Y+ L+  L K  LVD
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVD 520

Query: 498 VAAKILLEMKTMGYS---------VDVSASDVLMVYIKDG--------SVDHALRWLRFM 540
            A  +L EM   G           +D         ++ DG        S   +   +  +
Sbjct: 521 SAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPSFMLIEGV 580

Query: 541 GSSGIRTNNFIVRQLFESCM--------KNAL-YESAKPLLETYV---ESAAKVDLVLYT 588
             S I  ++  V + ++  +        K  L  E  + +L  +    E   K ++V ++
Sbjct: 581 DESEINWDDGHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFS 640

Query: 589 SVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDY 648
           ++L    RC+  ++   L+  L    ++ +    GL  G  +    V    +  F  +  
Sbjct: 641 AILNACSRCKSIEDASMLLEELRLFDNQVYGVAHGLLMGFSEN---VWIQAQYLFDEVK- 696

Query: 649 ELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWS---LDVR 705
           +++   A  F N L + L   GQ   A+ V       K++           WS   LD+ 
Sbjct: 697 QMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRKVW--------ETLWSDSCLDLH 748

Query: 706 NLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSS 755
            +S GAA   V   L      +     +P+ + ++TG            L+  I  +L+S
Sbjct: 749 LMSSGAARAMVHAWLLGIHSVVFEGHQLPKLLSILTGWGKHSKVVGDGALRRAIEALLTS 808

Query: 756 VESPFEVSKVVLR---APGDSVMEWFKKPIVQQFLL 788
           + +PF V+K  +    + G  V  W K+    + L+
Sbjct: 809 MGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLV 844



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 189/404 (46%), Gaps = 5/404 (1%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFD-EMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           G E Y  L   L    +    +  FD  +V +  KN     ++   +I  L +  K+E++
Sbjct: 149 GSEDYTFLLRELGNRGECWKAIRCFDFALVREGRKNERGKLAS--AMISTLGRLGKVELA 206

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F+  L         +++ L++ +   G   +A +++ESM+      +  TY  +I +
Sbjct: 207 KGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDA 266

Query: 315 LAKSG-RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
             K G      +++F+EM     +P    + SL+    + G  + +  ++ EM   G   
Sbjct: 267 CGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQ 326

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y +L+++  K G++D A  +  EM      PN   ++ + + +AK+G+L+ A++++
Sbjct: 327 DVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLY 386

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +M+  G      +Y+ LL ++A  G+ + A+K+   M S+G++  + TY ALL    K+
Sbjct: 387 NEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQ 446

Query: 494 KLVDVAAKILLEMKT-MGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
              +   ++  EMK    +   ++ S ++ VY K    + A+   R    +G++ +  + 
Sbjct: 447 GKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLY 506

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            +L  +  KN L +SA  LL+   +   + ++V Y S++    R
Sbjct: 507 SELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 162/372 (43%), Gaps = 75/372 (20%)

Query: 300 ECSLDGST-YELMIPSLAKSGRLDAAIKLFQEMKERNFRPS--FNIFASLVDSMGKAGRL 356
           E  L GS  Y  ++  L   G    AI+ F     R  R +    + ++++ ++G+ G++
Sbjct: 144 ESKLCGSEDYTFLLRELGNRGECWKAIRCFDFALVREGRKNERGKLASAMISTLGRLGKV 203

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +  V+      G+  +   + +LI +Y K+G  D A+++++ M+++G +PN   +  +
Sbjct: 204 ELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAV 263

Query: 417 IESHAKSG-KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I++  K G +    + IF +M R G  P   TY+ LL + +  G  ++A  L+N M   G
Sbjct: 264 IDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRG 323

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILL------------------------------- 504
           +   + TY  LL  + K   +D+A +I+L                               
Sbjct: 324 IDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDAL 383

Query: 505 ----EMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN----------- 548
               EMK +G  +D VS + +L +Y K G  + AL+  + MGSSG++ +           
Sbjct: 384 NLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGY 443

Query: 549 ------NFIVR------------------QLFESCMKNALYESAKPLLETYVESAAKVDL 584
                 N + R                   L +   K +LYE A  +   + ++  K D+
Sbjct: 444 GKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADV 503

Query: 585 VLYTSVLAHLVR 596
           VLY+ ++  L +
Sbjct: 504 VLYSELINALCK 515


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 140/636 (22%), Positives = 266/636 (41%), Gaps = 61/636 (9%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCC 257
            +  L     +S  FD  + +F+ M     K  +     YN VI    K   + +     
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLV---TYNAVIDACGKGGVEFKRVVEI 280

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           F+++L +  + D  +YN L+ +    GL   A  ++  M       D  TY  ++ ++ K
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G++D A ++  EM  +   P+   ++++ D   KAGRL+ ++ +Y EM+  G       
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +L+  YAK G+ + AL++  EM  +G + +   +  +++ + K GK +    +F +M+
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           +    P   TYS L+++++     + AM+++     AGL+  +  Y+ L+  L K  LVD
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVD 520

Query: 498 VAAKILLEMKTMGYS---------VDVSASDVLMVYIKDG--------SVDHALRWLRFM 540
            A  +L EM   G           +D         ++ DG        S       +  +
Sbjct: 521 SAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPTFMLIEGV 580

Query: 541 GSSGIRTNNFIVRQLFESCM--------KNAL-YESAKPLLETYV---ESAAKVDLVLYT 588
             S I  ++  V + ++  +        K  L  E  + +L  +    E   K ++V ++
Sbjct: 581 DESEINWDDGHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFS 640

Query: 589 SVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDY 648
           ++L    RC+  ++   L+  L    ++ +    GL  G  +    V    +  F  +  
Sbjct: 641 AILNACSRCKSIEDASMLLEELRLFDNQVYGVAHGLLMGFSEN---VWIQAQYLFDEVK- 696

Query: 649 ELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWS---LDVR 705
           +++   A  F N L + L   GQ   A+ V       K++           WS   LD+ 
Sbjct: 697 QMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRKVW--------ETLWSDSCLDLH 748

Query: 706 NLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSS 755
            +S GAA   V   L      +     +P+ + ++TG            L+  I  +L+S
Sbjct: 749 LMSSGAARAMVHAWLLGIHSVVFEGHQLPKLLSILTGWGKHSKVVGDGALRRAIEALLTS 808

Query: 756 VESPFEVSKVVLR---APGDSVMEWFKKPIVQQFLL 788
           + +PF V+K  +    + G  V  W K+    + L+
Sbjct: 809 MGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLV 844



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 189/404 (46%), Gaps = 5/404 (1%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFD-EMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           G E Y  L   L    +    +  FD  +V +  KN     ++   +I  L +  K+E++
Sbjct: 149 GSEDYTFLLRELGNRGECWKAIRCFDFALVREGRKNERGKLAS--AMISTLGRLGKVELA 206

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F+  L         +++ L++ +   G   +A +++ESM+      +  TY  +I +
Sbjct: 207 KGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDA 266

Query: 315 LAKSG-RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
             K G      +++F+EM     +P    + SL+    + G  + +  ++ EM   G   
Sbjct: 267 CGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQ 326

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y +L+++  K G++D A  +  EM      PN   ++ + + +AK+G+L+ A++++
Sbjct: 327 DVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLY 386

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +M+  G      +Y+ LL ++A  G+ + A+K+   M S+G++  + TY ALL    K+
Sbjct: 387 NEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQ 446

Query: 494 KLVDVAAKILLEMKT-MGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
              +   ++  EMK    +   ++ S ++ VY K    + A+   R    +G++ +  + 
Sbjct: 447 GKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLY 506

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            +L  +  KN L +SA  LL+   +   + ++V Y S++    R
Sbjct: 507 SELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 162/372 (43%), Gaps = 75/372 (20%)

Query: 300 ECSLDGST-YELMIPSLAKSGRLDAAIKLFQEMKERNFRPS--FNIFASLVDSMGKAGRL 356
           E  L GS  Y  ++  L   G    AI+ F     R  R +    + ++++ ++G+ G++
Sbjct: 144 ESKLCGSEDYTFLLRELGNRGECWKAIRCFDFALVREGRKNERGKLASAMISTLGRLGKV 203

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +  V+      G+  +   + +LI +Y K+G  D A+++++ M+++G +PN   +  +
Sbjct: 204 ELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAV 263

Query: 417 IESHAKSG-KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I++  K G +    + IF +M R G  P   TY+ LL + +  G  ++A  L+N M   G
Sbjct: 264 IDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRG 323

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILL------------------------------- 504
           +   + TY  LL  + K   +D+A +I+L                               
Sbjct: 324 IDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDAL 383

Query: 505 ----EMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN----------- 548
               EMK +G  +D VS + +L +Y K G  + AL+  + MGSSG++ +           
Sbjct: 384 NLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGY 443

Query: 549 ------NFIVR------------------QLFESCMKNALYESAKPLLETYVESAAKVDL 584
                 N + R                   L +   K +LYE A  +   + ++  K D+
Sbjct: 444 GKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADV 503

Query: 585 VLYTSVLAHLVR 596
           VLY+ ++  L +
Sbjct: 504 VLYSELINALCK 515


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 138/278 (49%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I+      +L+    CF ++  + C  +  +YN L+  +   G   +AF + +SM
Sbjct: 12  TYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSM 71

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  +  +Y ++I  L + G +  A ++ +EM  + F P    + +L++   K G  
Sbjct: 72  SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNF 131

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ ++ EM   G  PS   Y +LI S  KA  L+ A+  +D+MRI G RPN   +T +
Sbjct: 132 HQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTL 191

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+  ++ G L+ A  I  +M  +GF P+  TY+  +  H    +++ A+ +   M   GL
Sbjct: 192 IDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 251

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
            P + +Y+ +++   ++  +D A ++  EM   G S D
Sbjct: 252 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPD 289



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 145/321 (45%), Gaps = 1/321 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN+L+  F + G   K    +  ME+  C  +  TY  +I +  K GR+D A  L + M
Sbjct: 12  TYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSM 71

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             +  +P+   +  +++ + + G +  + ++  EM   G  P    Y +L+  Y K G  
Sbjct: 72  SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNF 131

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             AL +  EM   G  P+   +T +I S  K+  L+ AM  F  M   G  P   TY+ L
Sbjct: 132 HQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTL 191

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++  +  G ++ A ++ N MT +G  P + TY A +      + ++ A  ++ EM   G 
Sbjct: 192 IDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 251

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           + D VS S ++  + + G +D A +  + M   G+  +      L +   +      A  
Sbjct: 252 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 311

Query: 571 LLETYVESAAKVDLVLYTSVL 591
           L +  ++     D   YT+++
Sbjct: 312 LSQEMLDMGLPPDEFTYTTLI 332



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 118/265 (44%), Gaps = 11/265 (4%)

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P+   +  L+      G L   +  + EM+  G  P+   Y +LI++Y K G++D A  L
Sbjct: 8   PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
              M   G +PN   + +II    + G +  A  I  +M   GF P   TY+ LL  +  
Sbjct: 68  LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCK 127

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G    A+ ++  M   G+ P + TYTAL+  + K + ++ A +   +M+  G   +   
Sbjct: 128 EGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERT 187

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSG-----IRTNNFIVRQLFESCMKNALYESAKPL 571
              L+  + + G ++ A R L  M  SG     +  N FI        M+ AL      +
Sbjct: 188 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL-----GV 242

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
           ++  VE     D+V Y+++++   R
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCR 267



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 133/311 (42%), Gaps = 5/311 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKL 251
           + P +  Y  L +   +  +F   L +  EMV    +NG+S     Y  +I  + KA  L
Sbjct: 111 FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV----RNGVSPSVVTYTALINSMCKARNL 166

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
             +   F ++     + + ++Y  L+  F  +GL  +A+ I   M +   S    TY   
Sbjct: 167 NRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAF 226

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I       R++ A+ + QEM E+   P    +++++    + G LD + ++  EM   G 
Sbjct: 227 IHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGV 286

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P A  Y SLI+   +  +L  A  L  EM   G  P+   +T +I ++   G L+ A+ 
Sbjct: 287 SPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALH 346

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +  +M   GFLP   TYS L+       +   A +L   +      P   TY  L+   +
Sbjct: 347 LHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCS 406

Query: 492 KRKLVDVAAKI 502
             +   V A I
Sbjct: 407 NIEFKSVVALI 417



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 115/270 (42%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++    K      +     +++ +       +Y  L+          +A E ++ M
Sbjct: 117 TYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM 176

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  +  TY  +I   ++ G L+ A ++  EM E  F PS   + + +       R+
Sbjct: 177 RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERM 236

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + ++ V  EM   G  P    Y ++I  + + G+LD A ++  EM   G  P+   ++ +
Sbjct: 237 EEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSL 296

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   +  +L  A  +  +M   G  P   TY+ L+  +   G ++ A+ L++ M   G 
Sbjct: 297 IQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGF 356

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            P   TY+ L+  L K+     A ++L ++
Sbjct: 357 LPDAVTYSVLINGLNKQARTREAKRLLFKL 386



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 130/314 (41%), Gaps = 31/314 (9%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +IQ L +  +L  +    +++LD     D  +Y  L+  +  +G   KA  +++ M
Sbjct: 292 TYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEM 351

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS---------------FN 341
                  D  TY ++I  L K  R   A +L  ++      PS               F 
Sbjct: 352 IHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFK 411

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
              +L+      G +  + +V+  M    H+P   +Y  +I  + + G L  A  L+ EM
Sbjct: 412 SVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 471

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
             +GF P+      +I++  K G  +    +  D  R+  L        L+E++   G +
Sbjct: 472 IHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNM 531

Query: 462 DSAM---KLYNSMT----SAGLRPGLSTYTALLTLLAK------RKLVDVAAKILLE--- 505
           ++ +   +LYN ++    ++ + PG  T T+    L++         VD AA +      
Sbjct: 532 EAVLNVSRLYNKLSLKCVASSVPPGALTQTSQKIFLSRIIANFDGTAVDGAAHVGEGGEL 591

Query: 506 MKTMGYSVDVSASD 519
            K +G  V+ +A+D
Sbjct: 592 FKGLGGFVETAATD 605



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 1/165 (0%)

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M R+   P   TY+ L+    S G++   +  +  M   G  P + TY  L+    K   
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           +D A  +L  M + G   ++ + +V++  + ++GS+  A   L  MG  G   +      
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           L     K   +  A  +    V +     +V YT+++  + + ++
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARN 165


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 175/379 (46%), Gaps = 5/379 (1%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           + D  L+LFD+M    +K  +     YN +I    K  K++  +   + +     + +  
Sbjct: 220 NIDVALTLFDKM---ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLI 276

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           SYNV++     +G   +   +   M +   SLD  TY  +I    K G    A+ +  EM
Sbjct: 277 SYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
                 PS   + SL+ SM KAG ++ +M+   +M+  G  P+   Y +L++ +++ G +
Sbjct: 337 LRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYM 396

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A R+  EM   GF P+   +  +I  H  +GK++ A+++  DM+  G  P   +YS +
Sbjct: 397 NEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTV 456

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           L     S  VD A+++   M   G++P   TY++L+    +++    A  +  EM  +G 
Sbjct: 457 LSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGL 516

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D  + + ++  Y  +G ++ AL+    M   G+  +      L     K +    AK 
Sbjct: 517 PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKR 576

Query: 571 -LLETYVESAAKVDLVLYT 588
            LL+ + E +   D+  +T
Sbjct: 577 LLLKLFYEESVPSDVTYHT 595



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 191/430 (44%), Gaps = 17/430 (3%)

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVM--LFDVLNESRDFDGMLSLFDE---MV 224
           A K ++D   SL    +   Q  Y   D CY    +FD++ +S      LSL D+   +V
Sbjct: 107 AAKTLDDEYASLV---FKSLQETY---DLCYSTSSVFDLVVKSY---SRLSLIDKALSIV 157

Query: 225 HDSSKNG-ISLFSAYNRVIQYLAKADK-LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           H +  +G +    +YN V+    ++ + +  +   FK++L+S    +  +YN+L+  F  
Sbjct: 158 HLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCF 217

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
            G    A  +++ ME   C  +  TY  +I    K  ++D   KL + M  +   P+   
Sbjct: 218 AGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLIS 277

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           +  +++ + + GR+     V  EM   G+      Y +LI+ Y K G    AL +  EM 
Sbjct: 278 YNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEML 337

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             G  P+   +T +I S  K+G ++ AM     M   G  P   TY+ L++  +  G ++
Sbjct: 338 RHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMN 397

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVL 521
            A ++   M   G  P + TY AL+        ++ A  +L +MK  G S D VS S VL
Sbjct: 398 EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVL 457

Query: 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             + +   VD ALR  R M   GI+ +      L +   +    + A  L E  +     
Sbjct: 458 SGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLP 517

Query: 582 VDLVLYTSVL 591
            D   YT+++
Sbjct: 518 PDEFTYTALI 527



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 139/363 (38%), Gaps = 51/363 (14%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++   ++   +  +Y   +++ D+       +YN L+      G    A  + E M
Sbjct: 382 TYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDM 441

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++   S D  +Y  ++    +S  +D A+++ +EM E+  +P    ++SL+    +  R 
Sbjct: 442 KEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRT 501

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  +Y EM   G  P    Y +LI +Y   G L+ AL+L +EM   G  P+   ++++
Sbjct: 502 KEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVL 561

Query: 417 IESHAKS--------------------------------------------------GKL 426
           I    K                                                   G +
Sbjct: 562 INGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMM 621

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A  +F  M      P  + Y+ ++  H  +G +  A  LY  M  +G      T  AL
Sbjct: 622 TEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIAL 681

Query: 487 LTLLAKR-KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           +  L K  K+ ++ + I+  +++   S    A  ++ +  ++G++D  L  L  M   G 
Sbjct: 682 VKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGF 741

Query: 546 RTN 548
             N
Sbjct: 742 LPN 744



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 119/288 (41%), Gaps = 19/288 (6%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
           S D D  L +  EMV    K     +S+   +IQ   +  + + +   ++++L      D
Sbjct: 463 SYDVDEALRVKREMVEKGIKPDTITYSS---LIQGFCEQRRTKEACDLYEEMLRVGLPPD 519

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA----I 325
             +Y  L+  +  +G   KA +++  M +     D  TY ++I  L K  R   A    +
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579

Query: 326 KLFQE-----------MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           KLF E           + E      F    SL+      G +  + +V+  M G  H+P 
Sbjct: 580 KLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPD 639

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  +I  + +AG +  A  L+ EM  +GF  +      ++++  K GK++   S+  
Sbjct: 640 GTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIV 699

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLS 481
            + R+  L        L+E++   G +D  + +   M   G  P G+S
Sbjct: 700 HVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 19/232 (8%)

Query: 194 VPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK-- 250
           +P DE  Y  L +      D +  L L +EMV    K  +     Y+ +I  L K  +  
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVE---KGVLPDVVTYSVLINGLNKQSRTR 572

Query: 251 ------LEMSY-------CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
                 L++ Y         +  ++++   I+ +S   L+  F  KG+  +A +++ESM 
Sbjct: 573 EAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESML 632

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 DG+ Y +MI    ++G +  A  L++EM +  F        +LV ++ K G+++
Sbjct: 633 GKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVN 692

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
               V + +        A     L+E   + G +D  L +  EM   GF PN
Sbjct: 693 ELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 179/396 (45%), Gaps = 3/396 (0%)

Query: 151 LETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNES 210
           L ++ D L     +  + +AL++    + +L+L RW  R            M+   L   
Sbjct: 104 LSSRKDDLLRAADVPSLLKALELSGHWEWALALVRWV-RAEGGAADAAALEMVVRTLARE 162

Query: 211 RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
              D +  L DEM+     +      AY  V+  L+   + E +   F ++         
Sbjct: 163 GQHDAVCDLLDEMLPLPPGSPGLDVRAYTTVLHALSHEGRYERALELFAELKREGVAPTH 222

Query: 271 QSYNVLMTLFLNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             YNV++ ++   G  + +   + E M       DG T   +I +  + G +D A+  F+
Sbjct: 223 VMYNVMLDVYGRMGRSWPQIVAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFE 282

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           ++K R   P    + +L+   GKAG    +++V  EM+  G +P A  Y  L  SYA+AG
Sbjct: 283 DLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAG 342

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
             + A +  D M   G  PN   +  I+ ++  +GK+D A+++F  M++ GF+P  +TY+
Sbjct: 343 FYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYN 402

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            +L M     + +  +++   M+ +G  P   T+  +L +  KR +     ++L  MK+ 
Sbjct: 403 LILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSC 462

Query: 510 GYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG 544
           G  +     + L+  Y + GS  +A +    M ++G
Sbjct: 463 GVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAG 498



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 176/408 (43%), Gaps = 12/408 (2%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           D  ++ F+++    S+  +     YN ++Q   KA     +    K++ +S CK D  +Y
Sbjct: 275 DEAVAFFEDL---KSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTY 331

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N L   +   G   +A +  ++M       +  TY  ++ +   +G++D A+ LF  MK+
Sbjct: 332 NELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKK 391

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
             F P  N +  ++  +GK  R +  +++  EM   G  P+   + +++    K G    
Sbjct: 392 NGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGY 451

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
             R+ + M+  G       F  +I ++ + G    A  ++ +M  AGF P  +TY+ LL 
Sbjct: 452 VTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLS 511

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
           + +  G   +A  + N M + G +P   +Y+ LL   AK    + A    +E +   Y  
Sbjct: 512 VLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGG--NAAGIEAIEKEV--YEG 567

Query: 514 DVSASDVLMVYI-----KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
            V  S V++  +     K   ++   R  + + + G + +  I   +     KN +Y  A
Sbjct: 568 TVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKA 627

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616
             + ++  +     DL+ Y S++    +  +      ++  L  ++ K
Sbjct: 628 GEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLK 675



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 174/402 (43%), Gaps = 52/402 (12%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L+LF W K+   ++P    Y ++  +L +   F+ ML +  EM    S++G +    
Sbjct: 380 DEALALFDWMKKNG-FIPYVNTYNLILGMLGKKSRFNVMLEMLGEM----SRSGCTP--- 431

Query: 238 YNRVI--QYLAKADKLEMSYCCFKKVLD--SDCKID--TQSYNVLMTLFLNKGLPYKAFE 291
            NRV     LA   K  M      +VL+    C ++    ++N L++ +   G    AF+
Sbjct: 432 -NRVTWNTMLAVCGKRGME-GYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFK 489

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP------------- 338
           +Y+ M     +   +TY  ++  L++ G   AA  +  +MK   F+P             
Sbjct: 490 MYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHA 549

Query: 339 ----------------------SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
                                 S+ I  +LV S  K  RL+   + + E+   GH+P   
Sbjct: 550 KGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLV 609

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           ++ S++  YAK G    A  ++D ++  G  P+   +  +++ +AKS +   A  I   +
Sbjct: 610 IFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRL 669

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           + +   P   +Y+ ++      G +  A ++ + M + G+RP + TY  L+   A R++ 
Sbjct: 670 KTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMF 729

Query: 497 DVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWL 537
             A +++  M     S ++++   V+  Y K    D A  +L
Sbjct: 730 SEAREVVSYMIQRNLSPMELTYRRVVDSYCKAKRFDEARGFL 771



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 120/288 (41%), Gaps = 3/288 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           ++DEM   ++       + YN ++  L++      +     K+ +   K +  SY++L+ 
Sbjct: 490 MYDEM---TAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQ 546

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
                G       I + + +G           ++ S  K  RL+   + FQE+  R  +P
Sbjct: 547 CHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKP 606

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
              IF S++    K G    + +++  ++  G  P    Y S+++ YAK+ +   A ++ 
Sbjct: 607 DLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKIL 666

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             ++ +  +P+   +  ++    K G +  A  I ++M   G  P   TY  L+  +AS 
Sbjct: 667 KRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASR 726

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
                A ++ + M    L P   TY  ++    K K  D A   L E+
Sbjct: 727 EMFSEAREVVSYMIQRNLSPMELTYRRVVDSYCKAKRFDEARGFLYEI 774


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 152/332 (45%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  K+  ++VP D C  +L + L + + F  +   + E++       +  F   N
Sbjct: 85  AIQCFRLTKKHKFWVPFDTCRKVL-EHLMKLKYFKLVWDFYKEILECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            V+    K  ++  +   F  +     +    S+N LM  ++  G   + F +  +M   
Sbjct: 141 IVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +R   P+   F +L+D   K G +D++
Sbjct: 201 GVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M   G  P    Y +LI    K G L     L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+ D A K++  M S GL+P 
Sbjct: 321 CCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
             TYT ++    K+  V  A+++L EM+  G+
Sbjct: 381 NGTYTMIINEFCKKGDVRTASRLLKEMQRDGH 412



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 152/348 (43%), Gaps = 1/348 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ LMT +L  G  + A + +   +K +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  ++    K G +  +  V+  +   G RPS   + +L+  Y + 
Sbjct: 125 KEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+++H  +G VDSAM++Y  M S G  P L TY  L+  L K+  +     ++ EM  
Sbjct: 245 TTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR +N     L     +    + 
Sbjct: 305 NGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           A+ +    +    K D   YT ++    +  D +    L+  +    H
Sbjct: 365 AEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGH 412



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 144/311 (46%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  +K++L+         +N++M  F  +G   +A  +++
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        ++  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 161 AITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKES 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K G +D+A+ ++ +M   GF P+   + 
Sbjct: 221 KVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L    ++  +M   G  P   TY+ L++     G +++A +    M   
Sbjct: 281 TLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +    D A K+  EM ++G   D     +++  + K G V  A
Sbjct: 341 SIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTA 400

Query: 534 LRWLRFMGSSG 544
            R L+ M   G
Sbjct: 401 SRLLKEMQRDG 411



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 141/303 (46%), Gaps = 3/303 (0%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  ++ +  +SG +  AI+ F+  K+  F   F+    +++ + K     
Sbjct: 59  KGTQRSDIYVFSGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  ++  + K G++  A  ++D +   G RP+   F  ++
Sbjct: 119 LVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       +VD A +L+N M   GL 
Sbjct: 179 NGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+ +  K  +VD A +I  +M + G+S D+   + L+  + K G +      
Sbjct: 239 PNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRAL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M  +G++ +      L + C K    E+A    +  ++ + ++D V YT++++ L  
Sbjct: 299 IDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGL-- 356

Query: 597 CQD 599
           CQ+
Sbjct: 357 CQE 359



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 95/211 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD     +  ++  L+ +    G+   A EIY+ M
Sbjct: 208 TYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L     L  EM     +P    + +L+D   K G L
Sbjct: 268 LSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +L+    + G+ D A +++ EM   G +P+ G +TMI
Sbjct: 328 ETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +  A  +  +M+R G +P   T
Sbjct: 388 INEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  132 bits (332), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 166/371 (44%), Gaps = 4/371 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AYN V+  L+ A  L  +   F  +L      +  +YN+L+     +G   +A  +   M
Sbjct: 125 AYNAVLLALSDA-SLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDM 183

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  TY  ++ +  ++G +D A +L   M+E   +P+   F S+V+ + KAGR+
Sbjct: 184 RGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRM 243

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + KV+ EM   G  P    Y +L+  Y K G    AL ++ EM   G  P+   FT +
Sbjct: 244 EDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSL 303

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+G L+ A+ +  +M   G      T++ L++     G +D A+     M    +
Sbjct: 304 IHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRI 363

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +P +  Y AL+        +D A +++ EM+  G   D V+ S +L  Y K+G    A +
Sbjct: 364 QPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQ 423

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             + M  +G+  +      L     +      A  L +  +    + D V YTS++    
Sbjct: 424 LNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDG-- 481

Query: 596 RCQDEQNERHL 606
            C++   ER L
Sbjct: 482 HCKEGNVERAL 492



 Score =  132 bits (332), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 159/357 (44%), Gaps = 14/357 (3%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H  +AL V+ D            R +   P    Y  L      + + D    L D M  
Sbjct: 172 HRKEALSVLRD-----------MRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMRE 220

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
              K  +  F   N V+  + KA ++E +   F +++      D  SYN L+  +   G 
Sbjct: 221 GGLKPNLVTF---NSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGC 277

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
            ++A  ++  M +     D  T+  +I  + K+G L+ A+ L +EM+ER  + +   F +
Sbjct: 278 SHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTA 337

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+D   K G LD ++    EM+ C  +PS   Y +LI  Y   G++D A  L  EM   G
Sbjct: 338 LIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKG 397

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +P+   ++ I+ ++ K+G    A  +   M   G LP   TYS L+ +     ++  A 
Sbjct: 398 VKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAH 457

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            L+ +M S GL+P   TYT+L+    K   V+ A  +  EM   G   DV    VL+
Sbjct: 458 VLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLI 514



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 162/364 (44%), Gaps = 23/364 (6%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LS+F EM        +  F++   +I  + KA  LE +    +++ +   +++  ++  L
Sbjct: 282 LSVFAEMTRKGIMPDVVTFTS---LIHVMCKAGNLERAVGLVREMRERGLQMNEITFTAL 338

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  F  KG    A      M +         Y  +I      GR+D A +L +EM+ +  
Sbjct: 339 IDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGV 398

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P    +++++ +  K G   ++ ++  +M   G  P A  Y SLI    +  +L  A  
Sbjct: 399 KPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHV 458

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+  M   G +P+   +T +I+ H K G ++ A+S+  +M +AG LP   TYS L+   +
Sbjct: 459 LFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLS 518

Query: 457 SSGQVDSAMKL---------------YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            S +   A +L               Y+++        L +  ALL     + L++ A K
Sbjct: 519 KSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADK 578

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF----IVRQLF 556
           +   +    +++D S   VL+  + ++G+V  AL + + M   G   N+     ++R LF
Sbjct: 579 VYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLF 638

Query: 557 ESCM 560
           E  M
Sbjct: 639 EKGM 642



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 102/256 (39%), Gaps = 15/256 (5%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I+ L +  +L  ++  FK ++    + D  +Y  L+     +G   +A  +++ M 
Sbjct: 440 YSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMV 499

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA---- 353
           K     D  TY ++I  L+KS R   A +L  ++      P+   + +L+     A    
Sbjct: 500 KAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKS 559

Query: 354 -----------GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
                      G ++ + KVY  +          +Y  LI  + + G +  AL    +M 
Sbjct: 560 VLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQML 619

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             GF PN      +I    + G +  A  +   +     L        L++++   G VD
Sbjct: 620 QCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVD 679

Query: 463 SAMKLYNSMTSAGLRP 478
           + + + + M   GL P
Sbjct: 680 AVLDVLHGMARDGLLP 695



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 20/231 (8%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKL-E 252
           P +  Y  L D   +  + +  LSL DEMV    K G+      Y+ +I  L+K+ +  E
Sbjct: 470 PDEVTYTSLIDGHCKEGNVERALSLHDEMV----KAGVLPDVVTYSVLINGLSKSARTKE 525

Query: 253 MSYCCFK----KVLDSDCKIDT----------QSYNVLMTLFLNKGLPYKAFEIYESMEK 298
                FK    + + ++ K D           +S   L+  F  KGL  +A ++Y+S+  
Sbjct: 526 AQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILD 585

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              +LDGS Y ++I    + G +  A+   ++M +  F P+     SL+  + + G +  
Sbjct: 586 RNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVE 645

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + +V  ++  C     A    +LI+   K G +D  L +   M   G  P+
Sbjct: 646 ADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLPS 696


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 182/420 (43%), Gaps = 4/420 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L +VL ++     + S    MV    ++ +S F   N +I+ L KA ++  +
Sbjct: 166 PDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTF---NILIKALCKAHQVRPA 222

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               +++       D  ++  +M  ++  G    A  I E M +  C     T  ++I  
Sbjct: 223 ILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLING 282

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K GR+D A+   QE     FRP    + +LV+ + K G    +M+V   M   G  P 
Sbjct: 283 FCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPD 342

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y SLI    K G+++ A+++ D+M      PN   +  II S  K  ++D A  I  
Sbjct: 343 IYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIAR 402

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            +   G LP   T++ L++    S    SAM L+  M   G RP   TY  L+  L   +
Sbjct: 403 LLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSR 462

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            ++ A  +L EM+  G + +V   + L+  + K+  ++ A      M   G+  ++    
Sbjct: 463 KLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYN 522

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
            L +   K+   E A  L++  +    + D   Y S+L H  +  D +    ++  ++++
Sbjct: 523 TLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSS 582



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 113/450 (25%), Positives = 199/450 (44%), Gaps = 39/450 (8%)

Query: 160 FVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSL 219
           F PK   + + L+   D   +L +F WA +Q  +VP    Y  +   L ++  F+ M  +
Sbjct: 62  FTPK--QLIETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRV 119

Query: 220 FDEMVHDSSK--NGISL--------FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI- 268
            +EM     +   GI L        F  Y+ V+  +              KV++ + +I 
Sbjct: 120 LEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIV--------------KVMEDEYRIK 165

Query: 269 -DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            DT+ YNVL+ + ++          + SM +     D ST+ ++I +L K+ ++  AI +
Sbjct: 166 PDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILM 225

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM--QGCGHRPSAPMYVS-LIES 384
            +EM      P    F +++    + G LD ++++  +M   GC   P   + V+ LI  
Sbjct: 226 MEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGC---PCTDVTVNVLING 282

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           + K G++D AL    E    GFRP+   +  ++    K G    AM +   M   G  P 
Sbjct: 283 FCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPD 342

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TY+ L+      G+++ A+K+ + M S    P   TY A+++ L K   VD A +I  
Sbjct: 343 IYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIAR 402

Query: 505 EMKTMGYSVDVSASDVLMVYIKDGSVDH--ALRWLRFMGSSGIRTNNFIVRQLFES-CMK 561
            + + G   DV   + L+  +   S +H  A+     M   G R + F    L +S C  
Sbjct: 403 LLTSKGILPDVCTFNSLIQGLCLSS-NHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSS 461

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVL 591
             L E+   L E  +   A+ ++V+Y +++
Sbjct: 462 RKLEEALNLLKEMELNGCAR-NVVIYNTLI 490



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 169/359 (47%), Gaps = 9/359 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++  L K    + +      +L      D  +YN L++     G   +A +I + M
Sbjct: 310 TYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQM 369

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
              +CS +  TY  +I SL K  R+D A ++ + +  +   P    F SL+  +  +   
Sbjct: 370 VSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNH 429

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            ++M ++ EM+G G RP    Y  LI+S   + KL+ AL L  EM + G   N  ++  +
Sbjct: 430 KSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTL 489

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K+ +++ A  IF +ME  G      TY+ L++    S +V+ A +L + M   GL
Sbjct: 490 IDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGL 549

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           RP   TY +LLT   K   +  AA I+  M + G + D V+ + ++    K G V  A R
Sbjct: 550 RPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASR 609

Query: 536 WLRFMGSSGI----RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
            LR +   G+       N +++ LF+   +N  +E+ + L    ++ +   D + Y  V
Sbjct: 610 LLRSIQMKGMVLTPHAYNPVIQALFK---RNRTHEAMR-LFREMLDKSEPPDAITYKIV 664



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 118/257 (45%)

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
           +SK  +     +N +IQ L  +   + +   F+++    C+ D  +YN+L+    +    
Sbjct: 405 TSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKL 464

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +A  + + ME   C+ +   Y  +I    K+ R++ A ++F EM+ +        + +L
Sbjct: 465 EEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTL 524

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +D + K+ R++ + ++  +M   G RP    Y SL+  + K G +  A  +   M  +G 
Sbjct: 525 IDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGC 584

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P+   +  +I    K+G++ +A  +   ++  G + TP  Y+ +++      +   AM+
Sbjct: 585 NPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMR 644

Query: 467 LYNSMTSAGLRPGLSTY 483
           L+  M      P   TY
Sbjct: 645 LFREMLDKSEPPDAITY 661



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 121/305 (39%), Gaps = 2/305 (0%)

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK-ERNFRPSFNIFASLVDSM 350
           + E M+   C  D   + + + S  K    D  + + + M+ E   +P    +  L++ +
Sbjct: 119 VLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVL 178

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
             A +L      +  M     R     +  LI++  KA ++  A+ + +EM   G  P+ 
Sbjct: 179 VDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDE 238

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             FT I++ + + G LD A+ I   M   G   T  T + L+      G++D A+     
Sbjct: 239 TTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQE 298

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGS 529
             S G RP   TY  L+  L K      A +++  M   G   D+   + L+  + K G 
Sbjct: 299 AVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGE 358

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           ++ A++ L  M S     N      +  S  K    + A  +           D+  + S
Sbjct: 359 IEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNS 418

Query: 590 VLAHL 594
           ++  L
Sbjct: 419 LIQGL 423



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 135/337 (40%), Gaps = 40/337 (11%)

Query: 143 NRWKWGPELETQLDKLQFVPKMV---HITQALKVINDSDTSLSLFRWAKRQSWYVPGDEC 199
           NR     E+   L     +P +     + Q L + ++  +++ LF   K +    P +  
Sbjct: 392 NRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCR-PDEFT 450

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA---------------------- 237
           Y ML D L  SR  +  L+L  EM  +     + +++                       
Sbjct: 451 YNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEME 510

Query: 238 ----------YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
                     YN +I  L K+ ++E +     +++    + D  +YN L+T F   G   
Sbjct: 511 LQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIK 570

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           KA +I ++M    C+ D  TY  +I  L K+GR+  A +L + ++ +    + + +  ++
Sbjct: 571 KAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVI 630

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK-AGKLDTALRLWDEMRIAGF 406
            ++ K  R   +M+++ EM      P A  Y  +        G +  A+    EM   G 
Sbjct: 631 QALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGN 690

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTD--MERAGF 441
            P F  F M+ E    +  +D  +    D  ME+A F
Sbjct: 691 IPEFSSFVMLAEGLC-TLSMDDTLVKLVDMIMEKAKF 726


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 220/470 (46%), Gaps = 17/470 (3%)

Query: 135 VAKIV--EVVNRWKWGPELETQLDKLQ--FVPKMVHITQALKVINDSDTSLSLFRWAKRQ 190
           +A+I+  +VV+  + G  +E  L       VP +V   + +  I D +T+  +F+WA +Q
Sbjct: 38  LAEIILRQVVDSKRAGEGIEKSLGLYGDILVPDLV--GKVIHRIPDPNTAWEVFQWAGKQ 95

Query: 191 SWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           S +      C  +L   +   R  D  L     M +    + +S    YN ++    KA 
Sbjct: 96  SKFTHNRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVS----YNTLMNGFFKAG 151

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            ++ +   F ++ DS   +  +S+N+++    + G    A+E+++ M  G  S +  +Y 
Sbjct: 152 DVKKALALFGEMKDSGIAV-LRSHNIVLRGLCSGGKISMAWEVFKDMS-GIFSPNLISYT 209

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           +MI  L KS ++D AI LF++M ++   P    + +L+D +GK  R+  +  ++ E +  
Sbjct: 210 IMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 269

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFTMIIESHAKSGKLDI 428
           G  P+   Y ++I+   K G+++ AL L+D+M R    +P+   ++ +I     S + + 
Sbjct: 270 GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEK 329

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL-RPGLSTYTALL 487
           A  ++ +M   G  P   TY+ LL+    SG  D AM+++  M    +  P + TYT L+
Sbjct: 330 AYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLI 389

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
               K   +  A K+  EM+      D V+ + V+    K+  +D A      +G +  +
Sbjct: 390 DRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKT-CK 448

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            ++ +   +     K    + AK L +  ++S     L  YT+++    R
Sbjct: 449 PDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCR 498



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 150/315 (47%), Gaps = 8/315 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D L +SR  D  ++LF +MV  +    +  + A   +I  L K  +++ +Y  F+
Sbjct: 208 YTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGA---LIDGLGKQRRVKEAYDLFE 264

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKS 318
           +     C     +YN ++      G    A  +Y+ M  +     D  TY  +I  L  S
Sbjct: 265 EARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLS 324

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH--RPSAP 376
            R + A +L++EM +    P    + +L+D + K+G  D +M+++ +M G G+   P+  
Sbjct: 325 NRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKM-GVGNVCDPNVI 383

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y  LI+ + K  +L  A++L  EM      P+   FT +I+   K  ++D A  +F  +
Sbjct: 384 TYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESI 443

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            +    P    ++ +L  +    ++D A KL++ M  +G  P L+TYTAL+T   +    
Sbjct: 444 GKT-CKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRY 502

Query: 497 DVAAKILLEMKTMGY 511
             A  +  EM  MG+
Sbjct: 503 SDALIMYHEMIEMGF 517



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 149/324 (45%), Gaps = 10/324 (3%)

Query: 160 FVPKMVHITQALKVINDS---DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
           F P ++  T  +  +  S   D +++LF+    ++ Y P    Y  L D L + R     
Sbjct: 201 FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIY-PDVVTYGALIDGLGKQRRVKEA 259

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK-VLDSDCKIDTQSYNV 275
             LF+E     +K        YN +I  L K  ++E +   +   V +   K D  +Y+ 
Sbjct: 260 YDLFEEA---RAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSA 316

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+          KA+E+YE M    CS D  TY  ++  L KSG  D A+++F++M   N
Sbjct: 317 LINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGN 376

Query: 336 F-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
              P+   +  L+D   K  RL  ++K+  EM+G    P A  + ++I+   K  ++D A
Sbjct: 377 VCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEA 436

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             L++ +     +P+  LF  ++  + K  ++D A  +   M  +G  PT +TY+ L+  
Sbjct: 437 HELFESIG-KTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTG 495

Query: 455 HASSGQVDSAMKLYNSMTSAGLRP 478
              +G+   A+ +Y+ M   G  P
Sbjct: 496 FCRTGRYSDALIMYHEMIEMGFPP 519


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 167/357 (46%), Gaps = 3/357 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ VI    K   L+ +Y  + ++LD     +  +YN ++          KA E+  +M
Sbjct: 90  SYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 149

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     D  TY  ++     SG+   AI   ++M+     P    + SL+D + K GR 
Sbjct: 150 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 209

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + K++  M   G +P    Y +L++ YA  G L     L D M   G  PN  +F+++
Sbjct: 210 TEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 269

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + ++AK  K++ AM +F+ M + G  P   TY  ++ +   SG+V+ AM  +  M   GL
Sbjct: 270 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL 329

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            PG   Y +L+  L      + A +++LEM   G  ++ +  + ++  + K+G V  + +
Sbjct: 330 SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 389

Query: 536 WLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               M   G++ +      L +  C+   + E+ K LL + V    K D V Y++++
Sbjct: 390 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK-LLASMVSVGMKPDCVTYSTLI 445



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 172/382 (45%), Gaps = 4/382 (1%)

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           M  L D MV +       +FS    ++   AK +K+E +   F K+       +  +Y  
Sbjct: 247 MHGLLDLMVRNGIHPNHYVFSI---LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGA 303

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           ++ +    G    A   +E M     S     Y  +I  L    + + A +L  EM +R 
Sbjct: 304 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 363

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
              +   F S++DS  K GR+  S K++  M   G +P    Y +LI+ Y  AGK+D A 
Sbjct: 364 ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 423

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           +L   M   G +P+   ++ +I  + K  ++  A+ +F +ME +G  P   TY+ +L+  
Sbjct: 424 KLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGL 483

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             + +  +A +LY  +T +G +  LSTY  +L  L K KL D A ++   +  M   ++ 
Sbjct: 484 FQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEA 543

Query: 516 SASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
              ++++   +K G  D A        S+G+  N +  R + E+ +   L E    L  +
Sbjct: 544 RTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLS 603

Query: 575 YVESAAKVDLVLYTSVLAHLVR 596
             ++   VD  +   ++  L++
Sbjct: 604 MEDNGCTVDSGMLNFIVRELLQ 625



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 138/286 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++ YL K  +   +   F  +     K +  +Y  L+  +  KG   +   + + M
Sbjct: 195 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 254

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     +   + +++ + AK  +++ A+ +F +M+++   P+   + +++  + K+GR+
Sbjct: 255 VRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRV 314

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +M  + +M   G  P   +Y SLI       K + A  L  EM   G   N   F  I
Sbjct: 315 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 374

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+SH K G++  +  +F  M R G  P   TYS L++ +  +G++D A KL  SM S G+
Sbjct: 375 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 434

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           +P   TY+ L+    K   +  A  +  EM++ G S D+   ++++
Sbjct: 435 KPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIIL 480



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 130/318 (40%), Gaps = 1/318 (0%)

Query: 221 DEMVHDSSKNGISLFSAY-NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           +E++ +    GI L + + N +I    K  ++  S   F  ++    K D  +Y+ L+  
Sbjct: 353 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 412

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           +   G   +A ++  SM       D  TY  +I    K  R+  A+ LF+EM+     P 
Sbjct: 413 YCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPD 472

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              +  ++  + +  R   + ++Y+ +   G +     Y  ++    K    D ALR++ 
Sbjct: 473 IITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQ 532

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            + +   +     F ++I++  K G+ D A  +F      G +P   TY  + E     G
Sbjct: 533 NLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQG 592

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
            ++   +L+ SM   G          ++  L +R  +  A   L  +    +S++ S + 
Sbjct: 593 LLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTAS 652

Query: 520 VLMVYIKDGSVDHALRWL 537
           + +  +  G      R+L
Sbjct: 653 LFIDLLSGGKYQEYHRFL 670


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 192/422 (45%), Gaps = 22/422 (5%)

Query: 170 ALKVINDSDTSLSL--FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
            L  + +S T L L  F+ A    + +    C  +L  ++ E+ +F G+  ++ EM+   
Sbjct: 167 VLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKEN-EFGGVEFVYKEMIRRK 225

Query: 228 -SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI-----DTQSYNVLMTLFL 281
            S N I+    +N VI  L K  KL  +      V+D D K+     +  +YN L+  + 
Sbjct: 226 ISPNLIT----FNTVINGLCKVGKLNKA----GDVVD-DMKVWGFWPNVVTYNTLIDGYC 276

Query: 282 NKGLP---YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
             G     YKA  I + M + + S +  T+ ++I    K   L AA+K+F+EM+ +  +P
Sbjct: 277 KMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKP 336

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +   + SLV+ +   G+L+ +  +  EM     +P+   Y +LI  Y K   L+ A  L+
Sbjct: 337 TVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELF 396

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           D +   G  PN   F  ++  + K GK++ A  +   M   GFLP  STY+CL+      
Sbjct: 397 DNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCRE 456

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G+++    L N M   G++    TY  L++   ++K    AA+++ EM   G        
Sbjct: 457 GKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTY 516

Query: 519 DVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           ++L+  Y  +G++  AL   + M   G   N      L +   +    E A  LL   +E
Sbjct: 517 NILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLE 576

Query: 578 SA 579
             
Sbjct: 577 KG 578



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 135/289 (46%), Gaps = 3/289 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    + +L D   +  +    L +F+EM     K  +     YN ++  L    KL  +
Sbjct: 301 PNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVV---TYNSLVNGLCNEGKLNEA 357

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                ++L S+ K +  +YN L+  +  K L  +A E+++++ K   + +  T+  ++  
Sbjct: 358 KVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHG 417

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K G+++ A  L + M E+ F P+ + +  L+    + G+++    +  EMQ  G +  
Sbjct: 418 YCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKAD 477

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI ++ +  +   A RL DEM   G +P+   + +++  +   G L  A+++  
Sbjct: 478 TVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRK 537

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
            ME+ G      TY+ L++ +   G+++ A  L N M   GL P  +TY
Sbjct: 538 QMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTY 586



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 136/337 (40%), Gaps = 39/337 (11%)

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           S+  G+   +    ++++ +  ++ +    ++ F+   +  ++ S      L+ ++ K  
Sbjct: 150 SVCSGQFCANSIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKEN 209

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
                  VY EM      P+   + ++I    K GKL+ A  + D+M++ GF PN   + 
Sbjct: 210 EFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYN 269

Query: 415 MIIESHAKSGK--------------------------------------LDIAMSIFTDM 436
            +I+ + K G+                                      L  A+ +F +M
Sbjct: 270 TLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEM 329

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +  G  PT  TY+ L+    + G+++ A  L + M S+ L+P + TY AL+    K+KL+
Sbjct: 330 QSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLL 389

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           + A ++   +   G + +V   + L+  Y K G ++ A    + M   G   N      L
Sbjct: 390 EEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCL 449

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
                +    E  K LL        K D V Y  +++
Sbjct: 450 IVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILIS 486



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 84/190 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++    K  K+E ++   K +L+     +  +YN L+  F  +G   +   +   M
Sbjct: 410 TFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEM 469

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +      D  TY ++I +  +      A +L  EM ++  +PS   +  L++     G L
Sbjct: 470 QCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNL 529

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ +  +M+  G   +   Y  LI+ Y + GKL+ A  L +EM   G  PN   + +I
Sbjct: 530 RAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEII 589

Query: 417 IESHAKSGKL 426
            E   + G L
Sbjct: 590 KEEMMEKGFL 599


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 171/360 (47%), Gaps = 6/360 (1%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I   AK+  +  +      V  +     T +   ++T   N G   +A  I+E +++
Sbjct: 331 NDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKE 390

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
           G        Y  ++    K+G L  A  +  EM+   F P  + ++ L+D+   AGR ++
Sbjct: 391 GGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWES 450

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  V  EM+  G RP++ ++  ++ SY   GK   + ++  EMR +G  P+   + ++I+
Sbjct: 451 ARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMID 510

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +  K   LD A++ F  M   G  P   T++ L++ H  SG  + A +L+ +M  +G  P
Sbjct: 511 TFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSP 570

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLR 538
             +TY  ++    +++  +    +L +M++ G   +V      + Y   G  + A+   R
Sbjct: 571 CTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANV------VTYTTLGLSEQAINAFR 624

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
            M + G++ +  ++  L  +  ++     A  +L+   E+  K D+V YT+++  L+R +
Sbjct: 625 VMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVE 684



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 173/423 (40%), Gaps = 75/423 (17%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVL---NESRDFDGMLSLFDEM 223
           I Q+L   N SD+S+    +A+ +S  +  D    +L D++    +S D +  +S F  M
Sbjct: 296 IIQSLTRTNKSDSSMLQKIYAEIESDKIELDG--QLLNDIIVGFAKSGDVNRAMS-FLAM 352

Query: 224 VHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           V     NG+S  +A    VI  L  A + E +   F+++ +      T++YN L+  ++ 
Sbjct: 353 VQG---NGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVK 409

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
            G    A  I   ME+   S D  TY L+I + A +GR ++A  + +EM+    RP+  +
Sbjct: 410 TGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYV 469

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           F+ ++ S    G+   S +V  EM+  G  P    Y  +I+++ K   LD AL  +D MR
Sbjct: 470 FSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMR 529

Query: 403 I-----------------------------------AGFRPNFGLFTMIIESHAKSGKLD 427
           +                                   +G  P    + ++I S  +  + +
Sbjct: 530 MEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWE 589

Query: 428 IAMSIFTDMERAGFLPTPSTYSCL---------LEMHASSGQVDSAMKLYNSMTSA---- 474
              ++   M+  G L    TY+ L           +  + G   S + L NS+ +A    
Sbjct: 590 DVKTLLGKMQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVL-NSLINAFGED 648

Query: 475 ----------------GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
                            L+P + TYT L+  L + +  D    +  EM   G + D  A 
Sbjct: 649 RRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKAR 708

Query: 519 DVL 521
            +L
Sbjct: 709 AML 711


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 168/365 (46%), Gaps = 4/365 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSD-CKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
            +  +I+ L   +K++ +   FKK++  + C+ D   Y  +M     KG   KAF++   
Sbjct: 144 TFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRL 203

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+G    D   Y ++I +  K G LD A  L  EMK++N  P    + SL+D +GK  +
Sbjct: 204 MEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQ 263

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +    +++EM      P    + S+I+   K GK++ A  +   M   G  PN   + +
Sbjct: 264 WEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNV 323

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++ +   G++  A  IF  M   G  P   +Y+ L+  +    ++D AM+L+  ++  G
Sbjct: 324 VMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNG 383

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHAL 534
           L+P + T + LL  L +    + A     EM+  G+  ++ +   +L  Y K+G V+ A+
Sbjct: 384 LKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAM 443

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                +      TN  I   +     KN   + A    E         D++ YT++++  
Sbjct: 444 SHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGY 503

Query: 595 VRCQD 599
             CQ+
Sbjct: 504 --CQE 506



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 162/351 (46%), Gaps = 6/351 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           D + SL    K+++  +P D   Y  L D L +   ++ + +LF EM+H +    +  F 
Sbjct: 230 DGATSLLNEMKQKN--IPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTF- 286

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             N VI  L K  K+E +      +++   + +  +YNV+M  +  +G   +A  I++SM
Sbjct: 287 --NSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSM 344

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  +Y  +I    +  ++D A++LF+E+ +   +PS    + L+  + + GR 
Sbjct: 345 IDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRT 404

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +   + EMQ  GH P+   + +L+  Y K G ++ A+  + ++       N  ++T +
Sbjct: 405 ECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAV 464

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+GKLD A + F  +   G  P   TY+ ++  +   G +D A  +   M   G 
Sbjct: 465 INGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGC 524

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
            P   TY  ++    +   V      L E+    +S + +  ++LM  I +
Sbjct: 525 LPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMDIIAE 575



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/306 (18%), Positives = 127/306 (41%), Gaps = 4/306 (1%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           AF ++  M   +      ++  ++ +L       + + +F+E+ +          +++V+
Sbjct: 56  AFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALSTVVN 115

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM-RIAGFR 407
           S     R D    V       G   +   + +LI       K+  A+ L+ ++ R     
Sbjct: 116 SCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICE 175

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+  ++  +++   K G    A  +   ME+    P    Y+ +++     G +D A  L
Sbjct: 176 PDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSL 235

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIK 526
            N M    + P + TYT+L+  L K    +    + LEM  +    DV   + V+    K
Sbjct: 236 LNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCK 295

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLV 585
           +G V+ A   + +M   G+  N      + +  C++  +   A+ + ++ ++   + D++
Sbjct: 296 EGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQM-GRARRIFDSMIDKGIEPDII 354

Query: 586 LYTSVL 591
            YT+++
Sbjct: 355 SYTALI 360


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 186/409 (45%), Gaps = 42/409 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++N ++Q L +  K   +   F+  L + C+ D  SYN++++ F N G  + A E+ E M
Sbjct: 79  SWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEM 138

Query: 297 EKG------------------ECSLDGS--------------TYELMIPSLAKSGRLDAA 324
           +                       LDG+              TY  +I + A++ +L+ A
Sbjct: 139 KSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEA 198

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
           +KL +EM+ER   P+   +  LVD++ K   +  +  V  +M   G  P+   + SL++ 
Sbjct: 199 MKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDG 258

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           + K G +D A +L   M   G RPN   ++ +I+   KS K   A  +  +M+  G  P 
Sbjct: 259 FCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPD 318

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TYS L+     + +++ A ++   M  +G  P +  Y++++    K   +  A K L 
Sbjct: 319 AFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQ 378

Query: 505 EMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSG-----IRTNNFIVRQLFES 558
           EM+    S D V+ + V+    K G +  A   L  M  SG     + T + ++  L   
Sbjct: 379 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGL--- 435

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           C  + L E+ K LL+   ++    D+V YT+++  L +C   +   +L+
Sbjct: 436 CKSDMLVEAQK-LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLL 483



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 148/317 (46%), Gaps = 8/317 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           Y  L D L +S+ F     + +EM       G++  +  Y+ +I  L KADK+E +    
Sbjct: 287 YSALIDGLCKSQKFLEAKEVLEEM----KTRGVTPDAFTYSALIHGLCKADKIEEAEQML 342

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +++  S C  D   Y+ ++  F   G   +A +  + M K   S D  TY  +I  L K 
Sbjct: 343 RRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKL 402

Query: 319 GRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           G++  A  + ++M+E  +  P    ++++++ + K+  L  + K+   M   G  P    
Sbjct: 403 GKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVT 462

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y ++I+   K G+L+ A  L   M+ AG  PN   +T +I    K+ K+D A  +  +M 
Sbjct: 463 YTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMR 522

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS--AGLRPGLSTYTALLTLLAKRKL 495
            AG  P   TY+ ++     SG++  A +L   M    A   P  +TY  ++  L    L
Sbjct: 523 NAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDL 582

Query: 496 VDVAAKILLEMKTMGYS 512
           V  A ++L +MK+   S
Sbjct: 583 VQEAEQLLEQMKSTTSS 599



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 172/413 (41%), Gaps = 42/413 (10%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L      ++  +  + L +EM        +     YN ++  L K   +  +    K
Sbjct: 182 YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLV---TYNVLVDALCKLSMVGAAQDVVK 238

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+++     +  ++N L+  F  +G    A ++   M       +  TY  +I  L KS 
Sbjct: 239 KMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ 298

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +   A ++ +EMK R   P    +++L+  + KA +++ + ++   M G G  P   +Y 
Sbjct: 299 KFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 358

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME-- 437
           S+I ++ K+GKL  A +   EMR     P+   +  +I+   K GK+  A  I   M+  
Sbjct: 359 SIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQES 418

Query: 438 ----------------------------------RAGFLPTPSTYSCLLEMHASSGQVDS 463
                                             +AG  P   TY+ +++     G+++ 
Sbjct: 419 GDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEE 478

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLM 522
           A  L   M  AG  P + TYT L++ L K + VD A +++ EM+  G   + V+ + ++ 
Sbjct: 479 AEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVN 538

Query: 523 VYIKDGSVDHALRWLRFM--GSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
                G +  A + ++ M  G +    +    R +  + M + L + A+ LLE
Sbjct: 539 GLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLE 591



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 140/319 (43%), Gaps = 4/319 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +  + P    +  L D   +  + D    L   MV    +  +  +SA   +I  L K+ 
Sbjct: 242 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSA---LIDGLCKSQ 298

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           K   +    +++       D  +Y+ L+          +A ++   M    C+ D   Y 
Sbjct: 299 KFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 358

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I +  KSG+L  A K  QEM+++   P    + +++D + K G++  +  +  +MQ  
Sbjct: 359 SIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQES 418

Query: 370 GH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           G   P    Y ++I    K+  L  A +L D M  AG  P+   +T II+   K G+L+ 
Sbjct: 419 GDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEE 478

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +   M+RAG  P   TY+ L+     + +VD A ++   M +AG  P L TY  ++ 
Sbjct: 479 AEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVN 538

Query: 489 LLAKRKLVDVAAKILLEMK 507
            L     +  A +++  MK
Sbjct: 539 GLCVSGRIKEAQQLVQRMK 557



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 107/240 (44%), Gaps = 4/240 (1%)

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           + P  V  + +  K  KL  A   W    I GF      +  +++   +  K   A  +F
Sbjct: 41  TTPRIVGRVVNSLKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLF 100

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
                A   P   +Y+ ++    ++G + +A++L   M SAG  P   T+T ++T +A  
Sbjct: 101 RSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANA 160

Query: 494 KLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
             +D A   +  +++MG   + V+ + ++  + +   ++ A++ L  M   G   N    
Sbjct: 161 GDLDGA---MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTY 217

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
             L ++  K ++  +A+ +++  +E     +++ + S++    +  +  + R L+ I+ A
Sbjct: 218 NVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVA 277


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 179/412 (43%), Gaps = 11/412 (2%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLN-ESRDFDGMLSLFDEMVHDSSKNGISLFSAY 238
           ++  FR   +  + VP   C  +L  V+     + +   +L+ E++       I  F   
Sbjct: 195 AVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALYLEVLDSGYPPKIYFF--- 251

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++    KA  +  +   F ++     +    S+N L++     G   + F +   ME 
Sbjct: 252 NVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMES 311

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  T+  +I  L K GRLD    LF EM  R   P+   F +L+D   K G++D 
Sbjct: 312 EGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDL 371

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++K +  M   G RP    Y +LI    K G L  A RL +EM  +G +P+   FT +I+
Sbjct: 372 ALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLID 431

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
              K G ++ A+ I   M   G       ++ L+      G+V  A ++   M SAG +P
Sbjct: 432 GCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKP 491

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
              TYT ++    K+  V +  K+L EM++ G+   V   + LM  + K G + +A   L
Sbjct: 492 DDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLL 551

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNA------LYESAKPLLETYVESAAKVD 583
             M + G+  N+     L +   K+       ++ S K L+  Y    A V+
Sbjct: 552 DAMLNVGVAPNDITYNILLDGHSKHGSSVDVDIFNSEKGLVTDYASYTALVN 603



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 155/343 (45%), Gaps = 1/343 (0%)

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           ++E S+  + +VLDS        +NVLM  F   G    A  +++ + K        ++ 
Sbjct: 228 EIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFN 287

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I    KSG ++   +L   M+     P    F++L++ + K GRLD    ++ EM G 
Sbjct: 288 TLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGR 347

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   + +LI+   K GK+D AL+ +  M   G RP+   +  +I    K G L  A
Sbjct: 348 GLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEA 407

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             +  +M  +G  P   T++ L++     G ++SA+++   M   G+      +TAL++ 
Sbjct: 408 RRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISG 467

Query: 490 LAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
           L +   V  A ++L +M + G+   D + + V+  + K G V    + L+ M S G    
Sbjct: 468 LCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPG 527

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                 L     K    ++AK LL+  +      + + Y  +L
Sbjct: 528 VVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILL 570



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 140/301 (46%), Gaps = 1/301 (0%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           + +++    K+G +  A  +F E+ +R  RP+   F +L+    K+G ++   ++   M+
Sbjct: 251 FNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVME 310

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P    + +LI    K G+LD    L+DEM   G  PN   FT +I+   K GK+D
Sbjct: 311 SEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVD 370

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           +A+  F  M   G  P   TY+ L+      G +  A +L N MT++GL+P   T+T L+
Sbjct: 371 LALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLI 430

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
               K   ++ A +I   M   G  +D V+ + ++    ++G V  A R L  M S+G +
Sbjct: 431 DGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFK 490

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            ++     + +   K    +    LL+          +V Y +++  L +    +N + L
Sbjct: 491 PDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKML 550

Query: 607 M 607
           +
Sbjct: 551 L 551



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 34/270 (12%)

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           L+ E+ +  + P    F  L+    KAG +  +  V+ E+   G RP+   + +LI    
Sbjct: 235 LYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCC 294

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K+G ++   RL   M   G  P+   F+ +I    K G+LD    +F +M   G +P   
Sbjct: 295 KSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGV 354

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           T++ L++     G+VD A+K +  M + G+RP L TY AL+  L K              
Sbjct: 355 TFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKV------------- 401

Query: 507 KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
                                G +  A R +  M +SG++ +      L + C K+   E
Sbjct: 402 ---------------------GDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDME 440

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           SA  +    VE   ++D V +T++++ L R
Sbjct: 441 SALEIKRRMVEEGIELDDVAFTALISGLCR 470


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 136/571 (23%), Positives = 242/571 (42%), Gaps = 48/571 (8%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           P   TQL +  F PK   +  AL+  +D D+ L L  WA +Q  +VP    Y  +   L 
Sbjct: 60  PSPTTQLPQ-NFTPK--QLRDALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLG 116

Query: 209 ESRDFDGMLSLFDEMVHDSS--KNG-----ISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           +   F  M  +  EM H     + G     I  ++ +    + +A  D +E  +      
Sbjct: 117 KDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEF------ 170

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES-MEKGECSLDGSTYELMIPSLAKSGR 320
                K+D  +YN L+ + ++ G   K  EI  S M       D +T+ ++I +L ++ +
Sbjct: 171 ---GLKLDAFTYNFLLNVLVD-GNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQ 226

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +  AI + +EM      P    F +L+    + G ++ ++++  +M   G  PS+ + V+
Sbjct: 227 IRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGC-PSSNVTVN 285

Query: 381 -LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            L+  Y K G+++  L   DEM   GFRP+   F  ++    + G +  A+ I   M + 
Sbjct: 286 VLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQE 345

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           GF P   TY+ L+      G+V+ A+++ N M      P   TY  L++ L K   V+ A
Sbjct: 346 GFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEA 405

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYIKDGSVDH--ALRWLRFMGSSGIRTNNFIVRQLFE 557
            ++   + + G   DV   + L+  +   + +H  A+     M + G   + F    L +
Sbjct: 406 TELARVLTSKGILPDVCTFNSLIQGLCLTN-NHRLAMELFEEMKTKGCHPDEFTYNMLID 464

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ--------NERHLMAI 609
           S       E A  LL+    S    ++V Y +++     C++++        +E  L  I
Sbjct: 465 SLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF--CKNKRIEEAEEIFDEMELQGI 522

Query: 610 LSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEG--AARYFVNVLLNYLV 667
            S      +  + GL    + R+      V E    +D  L EG    ++  N LL Y  
Sbjct: 523 -SRNVVTYNTLIDGLC---KNRR------VEEAAQLMDQMLMEGLKPDKFTYNSLLTYFC 572

Query: 668 LMGQINRARCVWKVAYENKLFPKAIVFDQHI 698
             G I +A  + +    N   P ++ +   I
Sbjct: 573 RAGDIKKAADIVQTMTSNGCEPDSVTYGTLI 603



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 143/309 (46%), Gaps = 1/309 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L K  ++E +     +++  D   +T +YN L++    +    +A E+   +
Sbjct: 353 TYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVL 412

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  T+  +I  L  +     A++LF+EMK +   P    +  L+DS+   GRL
Sbjct: 413 TSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRL 472

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + ++ +  EM+  G   +   Y +LI+ + K  +++ A  ++DEM + G   N   +  +
Sbjct: 473 EEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTL 532

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K+ +++ A  +   M   G  P   TY+ LL     +G +  A  +  +MTS G 
Sbjct: 533 IDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGC 592

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P   TY  L+  L+K   V++A+++L  ++  G  +     + V+    ++     A+R
Sbjct: 593 EPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVR 652

Query: 536 WLRFMGSSG 544
             R M   G
Sbjct: 653 LFREMMEKG 661



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 169/384 (44%), Gaps = 12/384 (3%)

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           +LS  DEM ++  +     F   N ++  L +   ++ +      +L      D  +YN 
Sbjct: 300 VLSFIDEMSNEGFRPDRFTF---NSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNS 356

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+      G   +A EI   M   + S +  TY  +I +L K  +++ A +L + +  + 
Sbjct: 357 LIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 416

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    F SL+  +        +M+++ EM+  G  P    Y  LI+S    G+L+ AL
Sbjct: 417 ILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEAL 476

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            L  EM  +G   N   +  +I+   K+ +++ A  IF +ME  G      TY+ L++  
Sbjct: 477 SLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGL 536

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD- 514
             + +V+ A +L + M   GL+P   TY +LLT   +   +  AA I+  M + G   D 
Sbjct: 537 CKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDS 596

Query: 515 VSASDVLMVYIKDGSVDHALRWLRFMGSSGI----RTNNFIVRQLFESCMKNALYESAKP 570
           V+   +++   K G V+ A R LR +   G+    +T N +++ LF    +      A  
Sbjct: 597 VTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALF----REKRTSEAVR 652

Query: 571 LLETYVESAAKVDLVLYTSVLAHL 594
           L    +E     D V Y  V   L
Sbjct: 653 LFREMMEKGDPPDAVTYKVVFRGL 676



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 1/268 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L    +LE +    K++  S C  +  +YN L+  F       +A EI++ M
Sbjct: 458 TYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEM 517

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E    S +  TY  +I  L K+ R++ A +L  +M     +P    + SL+    +AG +
Sbjct: 518 ELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDI 577

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  +   M   G  P +  Y +LI   +KAG+++ A RL   +++ G       +  +
Sbjct: 578 KKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPV 637

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE-MHASSGQVDSAMKLYNSMTSAG 475
           I++  +  +   A+ +F +M   G  P   TY  +   + +  G +  A+     MT  G
Sbjct: 638 IKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKG 697

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKIL 503
             P  S++  L   L    + D   K++
Sbjct: 698 FLPDFSSFLMLAEGLCALSMEDTLIKLV 725


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/560 (22%), Positives = 234/560 (41%), Gaps = 40/560 (7%)

Query: 237 AYNRVIQYLAKADK-LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           +YN ++  + +  K +  +   +++++ S   ++  SYN+L+  F   G        +E 
Sbjct: 169 SYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEE 228

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+  C  +  TY  +I +  K  R+D A KL + M      P+   +  +++ + + GR
Sbjct: 229 MERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGR 288

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           ++ +  V  EM   G  P    Y +L+  Y K G    AL L  EM   G  P+   +T 
Sbjct: 289 IEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTS 348

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I +  K+G L+ AM  F  M   G  P   TY+ L+   +  G +D A ++++ M  +G
Sbjct: 349 LINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSG 408

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHAL 534
             P + TY ALL        ++ A  +L  M+  G S D VS S ++  + +   +D A 
Sbjct: 409 FPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAF 468

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           +    M   G+  +      L +   +      A  L +  +  +   D   YTS++   
Sbjct: 469 QMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGY 528

Query: 595 VRCQDEQNERHL------MAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFF----- 643
            +  D     +L         L  T    +  + GL      R+   L  ++ F+     
Sbjct: 529 CKEGDLNEALNLHDEMIKKGFLPDTV-TYNVLINGLNKQARTREAKRL-LLKLFYDESIP 586

Query: 644 HGIDYE--LEEGAARYFVNV--LLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIA 699
           +GI Y+  +E  +   F +V  L+    + G +N A  V++   +    P   V++  I 
Sbjct: 587 NGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIH 646

Query: 700 WSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVT----------GPTLKIVI 749
                     G      +H  H+  K M+ +G +P  + ++              L +VI
Sbjct: 647 ----------GHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVI 696

Query: 750 AQMLSSVE-SPFEVSKVVLR 768
             +L S + S  E+SK +++
Sbjct: 697 RDILRSCKLSDAELSKALVQ 716



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 161/357 (45%), Gaps = 4/357 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L  F+EM  +     +     YN VI    K  +++ ++   + +     + +  +YN++
Sbjct: 223 LRFFEEMERNRCLPNVV---TYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMV 279

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +      G   +   +   M++   + DG TY  ++    K G    A+ L  EM     
Sbjct: 280 INGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGL 339

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + SL+++M KAG L+ +M+ + +M   G RP+   Y SLI  +++ G +D A R
Sbjct: 340 PPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYR 399

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +WDEM  +GF P    +  ++  H  SG+++ A+ +   ME  G  P   +YS ++    
Sbjct: 400 IWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFC 459

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-V 515
              ++D A ++   M   G+ P   TY++L+  L +++ ++ A  +  EM       D  
Sbjct: 460 RYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEF 519

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           + + ++  Y K+G ++ AL     M   G   +      L     K A    AK LL
Sbjct: 520 TYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLL 576



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 138/336 (41%), Gaps = 37/336 (11%)

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP---------------------- 338
           C+   + ++L++ S +    ++ A+ +    K   F P                      
Sbjct: 128 CNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFA 187

Query: 339 ------------SFNIFAS--LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
                       S N+F+   L+     AG L+  ++ + EM+     P+   Y ++I +
Sbjct: 188 EKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGA 247

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           Y K  ++D A +L   M + G  PN   + M+I    + G+++    +  +M+R GF P 
Sbjct: 248 YCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPD 307

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TY+ L+  +   G    A+ L++ M   GL P + TYT+L+  + K   ++ A +   
Sbjct: 308 GVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFD 367

Query: 505 EMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
           +M   G   + V+ + ++  + + G +D A R    M  SG          L      + 
Sbjct: 368 QMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSG 427

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
             E A  LL          D+V Y++++A   R Q+
Sbjct: 428 RMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQE 463



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 149/376 (39%), Gaps = 34/376 (9%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L + + ++ + +  +  FD+M V     NG++    Y  +I   ++   ++ +Y  +
Sbjct: 346 YTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVT----YTSLINGFSQKGFMDEAYRIW 401

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            +++ S       +YN L+      G   +A  +   ME    S D  +Y  +I    + 
Sbjct: 402 DEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRY 461

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
             LD A ++  EM E+   P    ++SL+  + +  RL+ +  ++ EM      P    Y
Sbjct: 462 QELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTY 521

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SLI  Y K G L+ AL L DEM   GF P+   + ++I    K  +   A  +   +  
Sbjct: 522 TSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFY 581

Query: 439 AGFLPTPSTYSCLLEMHAS---------------SGQVDSAMKLYNSMTSAGLRPGLSTY 483
              +P   TY  L+E  +                 G ++ A +++ SM     +P  + Y
Sbjct: 582 DESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVY 641

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSS 543
             ++    +   V  A K+  EM   G+         L+  +    +D  L         
Sbjct: 642 NVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQL--------- 692

Query: 544 GIRTNNFIVRQLFESC 559
                N ++R +  SC
Sbjct: 693 -----NLVIRDILRSC 703



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 22/267 (8%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L   L E R  +    LF EM++   K+ +     Y  +I    K   L  +
Sbjct: 481 PDAITYSSLIQGLCEQRRLNEACDLFQEMLN---KSLLPDEFTYTSLINGYCKEGDLNEA 537

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                +++      DT +YNVL+     +    +A  +   +   E   +G TY+ +I S
Sbjct: 538 LNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIES 597

Query: 315 LAK---------------SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
            +                 G ++ A ++F+ M +RN +P+  ++  ++    + G +  +
Sbjct: 598 CSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKA 657

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW--DEMRIAGFRPNFGLFTMII 417
            K+Y EM   G  P     ++L+++    G +D  L L   D +R      +  L   ++
Sbjct: 658 HKLYKEMVDFGFIPHTVTIIALVKALYSEG-MDEQLNLVIRDILRSCKL-SDAELSKALV 715

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPT 444
           + + K G +D   ++ T+M + GFLP+
Sbjct: 716 QINHKEGNIDAVFNLLTEMAKDGFLPS 742


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 182/418 (43%), Gaps = 15/418 (3%)

Query: 151 LETQLDK------LQFVPKMVH-ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVML 203
           +E+ LD       ++  P  V  I ++ ++    D ++  F WA +Q  Y    ECYV L
Sbjct: 91  MESNLDTFCHMFLIKLSPSFVSFILRSTELQTKPDVAIRFFTWAGKQKKYTHNLECYVSL 150

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263
            DVL  +   D + S+F +         I    + N +I+       +E     ++++ +
Sbjct: 151 IDVLATNGVLDSVKSVFSKF---KEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKE 207

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
           +  +    SYN L+   +N      A  ++E ME G+   D  TY  MI    + G+   
Sbjct: 208 NGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRK 267

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A +  + M+ RN  P    + +L+ +    G  D+ + +Y EM   G      +Y  +I 
Sbjct: 268 AFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIG 327

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
              K GK      +++ M   G + N  ++T +I+S+AK G +  AM +F  M++ G  P
Sbjct: 328 GLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEP 387

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              TY  ++     SG++D A++     +  G+      Y++L+  L K   VD A +I 
Sbjct: 388 DEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIF 447

Query: 504 LEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG----IRTNNFIVRQLF 556
            EM   G   D    + L+    K G +D AL   + M   G    + T   ++  LF
Sbjct: 448 YEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLF 505



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 163/346 (47%), Gaps = 7/346 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEM 253
           P    Y+ L        DFD  L L+ EM     + G+ +    Y+ VI  L K  K   
Sbjct: 282 PDKITYMTLIQACYAEGDFDSCLGLYHEM----DEKGLEIPPHVYSLVIGGLCKDGKRVE 337

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
            Y  F+ ++   CK +   Y  L+      G   +A  +++ M+K     D  TY +++ 
Sbjct: 338 GYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVN 397

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           SL KSGRLD A++  +    +    +   ++SL+D +GK+GR+D + +++ EM   G  P
Sbjct: 398 SLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPP 457

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
            +  Y +LI++ AK GK+D AL L   M + G       +T++I    +  + + A++++
Sbjct: 458 DSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLW 517

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G  PT + +  L      SG+V  A K+ + M   G+ P  + +  ++ +L K 
Sbjct: 518 DLMIDKGITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGVIPE-TAFDDMINILCKA 576

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
             +  A K+   +   G  +      VL+  + K G+ D AL+ +R
Sbjct: 577 GRIKEACKLADGIVDRGREIPGRVRTVLINALRKAGNADLALKLMR 622



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/279 (17%), Positives = 100/279 (35%), Gaps = 35/279 (12%)

Query: 322 DAAIKLFQ-EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           D AI+ F    K++ +  +   + SL+D +   G LD+   V+ + +  G   +     S
Sbjct: 125 DVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNS 184

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI+S+   G ++  L +W  M+  G  P+   +  ++     S  ++ A  +F  ME   
Sbjct: 185 LIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGK 244

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY+ +++ +   G+   A +   +M    + P   TY  L+             
Sbjct: 245 IGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLI------------- 291

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
                                     +G  D  L     M   G+     +   +     
Sbjct: 292 ---------------------QACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLC 330

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           K+        + E  +    K ++ +YT+++    +C +
Sbjct: 331 KDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGN 369



 Score = 43.1 bits (100), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 43/209 (20%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           Y  L D L +S   D    +F EMV    K G    S  YN +I  LAK  K++ +    
Sbjct: 427 YSSLIDGLGKSGRVDEAERIFYEMV----KKGCPPDSYCYNALIDALAKCGKIDEALALS 482

Query: 259 KKVLDSDCKIDTQSYNVLMT----------------LFLNKGLPYKAFEIYESMEKGECS 302
           K++    C     +Y +L+T                L ++KG+   A   + ++  G C 
Sbjct: 483 KRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTA-AAFRALSTGLC- 540

Query: 303 LDG--------------------STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           L G                    + ++ MI  L K+GR+  A KL   + +R       +
Sbjct: 541 LSGKVARACKILDEMAPMGVIPETAFDDMINILCKAGRIKEACKLADGIVDRGREIPGRV 600

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
              L++++ KAG  D ++K+     G G+
Sbjct: 601 RTVLINALRKAGNADLALKLMRSKIGIGY 629


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 189/406 (46%), Gaps = 42/406 (10%)

Query: 167 ITQALKVINDSD-TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           I + LK ++++   +LS FRWA++Q  +    E Y +L + L + + F+ + +L    V 
Sbjct: 125 IVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNL----VS 180

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
           D  + GI     +  + +  A+A K++ +   F+K+     ++    +N L+        
Sbjct: 181 DMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRN 240

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE------------ 333
             KA E+++ M+ G    D  +Y +++    +   L    ++++EM++            
Sbjct: 241 VKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGI 300

Query: 334 -----------------------RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
                                  +N +PS ++F +L++ +G   RL  +++ + +++  G
Sbjct: 301 LINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSG 360

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P AP Y +++ +Y  + K+  A R+ DEMR +G  PN   + +I+    K  K   A 
Sbjct: 361 FAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAY 420

Query: 431 SIFTDMERA-GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           S+F  M R  G  PT STY  ++ M  +  +VD A+++++ M + G+ PG+  ++ L+  
Sbjct: 421 SVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINS 480

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHAL 534
           L     ++ A     EM  +G     +  S++    + DG  D AL
Sbjct: 481 LCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTAL 526



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS----AYNRVIQYLAKADK 250
           P    +  L + L   +     L  F+++        +S F+     YN V+     + K
Sbjct: 328 PSPHVFCTLINGLGSEKRLKEALEFFEQL-------KLSGFAPEAPTYNAVVGAYCWSMK 380

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-CSLDGSTYE 309
           +  +Y    ++  S    ++++Y++++   +      +A+ +++ M +   C    STY+
Sbjct: 381 MAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYD 440

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           +MI       R+D AI+++ EMK +   P  ++F++L++S+    +L+ +   + EM   
Sbjct: 441 IMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDV 500

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
           G RP A M+ +L ++    G+ DTAL + +++
Sbjct: 501 GIRPPATMFSNLKQALLDDGRKDTALLMAEKI 532


>gi|356521196|ref|XP_003529243.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Glycine max]
          Length = 601

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 182/374 (48%), Gaps = 2/374 (0%)

Query: 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV 224
           +HI +A   +N+ +  + LFR  + +S  + G  C   ++++L ES    G  S   +  
Sbjct: 224 LHIMEAYSKLNECEKVVQLFR--EFESRKLRGPTCLAQIYEILCESLARCGRASEALDYF 281

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
            + +K GIS +S Y+++I   A   +++++    ++        D + Y  L+ +++ +G
Sbjct: 282 REMTKKGISEYSIYSKLIYSFASLGEVDVAEELVREAKGKTTIKDPEVYLKLVHMYIEEG 341

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           L  K  E+ + ME  +  +       ++   +K     AA+K+F+E+  +   P    +A
Sbjct: 342 LLEKTLEVVKEMEDADVKVSDCILCTVVNGFSKKRGFSAAVKVFEELISKGNEPGQVTYA 401

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           S++++  + G+   + +V++EM+  G       Y ++I  Y + G++ +A++L  +M+  
Sbjct: 402 SVINAYWRLGQYSKAEEVFLEMEQKGFDKCVYAYSTMIVMYGRTGRVRSAMKLVAKMKER 461

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G +PN  ++  +I+ H +   L     ++ +M+R    P   +Y+ ++  ++ +G+ ++ 
Sbjct: 462 GCKPNVWIYNSLIDMHGRDKNLKQLEKLWKEMKRRRVAPDKVSYTSIIGAYSKAGEFETC 521

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
           +KL+N     G     +    ++ + +K   VD   K+L +MKT G  +D          
Sbjct: 522 VKLFNEYRMNGGLIDRALAGIMVGVFSKVGQVDELVKLLQDMKTEGTRLDQRLYQSAWNA 581

Query: 525 IKDGSVDHALRWLR 538
            KD  +    RW++
Sbjct: 582 FKDAGLQLQARWMK 595



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 148/336 (44%), Gaps = 5/336 (1%)

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           V  SD K+   +++  M  +    +      ++E +      LD   Y  ++ + +K   
Sbjct: 176 VFKSDSKVAFMAFSSAMRSYNKLHMFRNTVLVFERIRSSNVVLDSRGYLHIMEAYSKLNE 235

Query: 321 LDAAIKLFQEMKERNFR-PSF--NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            +  ++LF+E + R  R P+    I+  L +S+ + GR   ++  + EM   G    + +
Sbjct: 236 CEKVVQLFREFESRKLRGPTCLAQIYEILCESLARCGRASEALDYFREMTKKGISEYS-I 294

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  LI S+A  G++D A  L  E +      +  ++  ++  + + G L+  + +  +ME
Sbjct: 295 YSKLIYSFASLGEVDVAEELVREAKGKTTIKDPEVYLKLVHMYIEEGLLEKTLEVVKEME 354

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
            A    +      ++   +      +A+K++  + S G  PG  TY +++    +     
Sbjct: 355 DADVKVSDCILCTVVNGFSKKRGFSAAVKVFEELISKGNEPGQVTYASVINAYWRLGQYS 414

Query: 498 VAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A ++ LEM+  G+   V A S ++++Y + G V  A++ +  M   G + N +I   L 
Sbjct: 415 KAEEVFLEMEQKGFDKCVYAYSTMIVMYGRTGRVRSAMKLVAKMKERGCKPNVWIYNSLI 474

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           +   ++   +  + L +         D V YTS++ 
Sbjct: 475 DMHGRDKNLKQLEKLWKEMKRRRVAPDKVSYTSIIG 510


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 172/404 (42%), Gaps = 4/404 (0%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           C  +L  + NE R  +  L L   M  D   N       YN +I  L KA  ++ +    
Sbjct: 164 CNTLLKGLCNEKR-VEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVL 222

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           + ++D   K+D  +Y+ ++          +A  + + M       D  TY  +I  L K+
Sbjct: 223 QHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKA 282

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
             +D A  + Q M ++  +P    + +++D + KA  +D +  V   M     +P    Y
Sbjct: 283 QAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTY 342

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI  Y   G+    +R  +EM   G  P+   ++++++   K+GK   A  IF  M R
Sbjct: 343 NCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIR 402

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P  + Y  LL  +A+ G +     L + M + G+ P    +  +L   AK+ ++D 
Sbjct: 403 KGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDE 462

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A  I   M   G S DV    +L+    K G VD A+     M + G+  N+ +   L  
Sbjct: 463 AMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVY 522

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
                  +E A+ L     +   + ++V + +++ +L  C + Q
Sbjct: 523 GLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNL--CNEGQ 564



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 172/394 (43%), Gaps = 6/394 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  + D L +++  D    +   M+    K  +     YN +I  L KA  ++ +    +
Sbjct: 237 YSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVV---TYNTIIDGLCKAQAVDRAEGVLQ 293

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++D   K D  +YN ++          +A  + + M   +   D  TY  +I     +G
Sbjct: 294 HMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTG 353

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
                ++  +EM  R   P    ++ L+D + K G+   + K++  M   G +P+  +Y 
Sbjct: 354 EWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYG 413

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            L+  YA  G +     L D M   G  PN  +F +++ ++AK   +D AM IF+ M + 
Sbjct: 414 ILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQH 473

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   TY  L++     G+VD A+  +N M + G+ P    + +L+  L      + A
Sbjct: 474 GLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKA 533

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            ++  EM   G   +V   + +M  +  +G V  A R +  M   G+R N      L   
Sbjct: 534 EELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGG 593

Query: 559 -CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            C+     E+A+ LL+  V    K DL+ Y ++L
Sbjct: 594 HCLAGRTDEAAQ-LLDVMVSVGLKPDLISYDTLL 626



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 150/325 (46%), Gaps = 1/325 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +N+++  +  K +  +A  I+  M +   S D  TY ++I +L K GR+D A+  F +M 
Sbjct: 447 FNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI 506

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P+  +F SLV  +    R + + +++ EM   G RP+   + +++ +    G++ 
Sbjct: 507 NDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVM 566

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A RL D M   G RPN   +  +I  H  +G+ D A  +   M   G  P   +Y  LL
Sbjct: 567 VAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLL 626

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +  +G++D+A  L+  M   G+ PG  TY+ +L  L   +    A ++ L M   G  
Sbjct: 627 RGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQ 686

Query: 513 VDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D+   ++++  + K   VD A +  + + S  +R N      + +   K    + A  L
Sbjct: 687 WDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDL 746

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
             +        ++V Y  ++ ++++
Sbjct: 747 FASIPSHGLVPNVVTYCIMMKNIIQ 771



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 4/335 (1%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK---GECSLDGSTYELMIPSLAKSGRLD 322
           C  +  S N L+    N+    +A E+  +M +   G C+ +  TY  +I  L K+  +D
Sbjct: 157 CMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVD 216

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A  + Q M ++  +     +++++D + KA  +D +  V   M   G +P    Y ++I
Sbjct: 217 RAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTII 276

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           +   KA  +D A  +   M   G +P+   +  II+   K+  +D A  +   M      
Sbjct: 277 DGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVK 336

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   TY+CL+  + S+G+    ++    M + GL P + TY+ LL  L K      A KI
Sbjct: 337 PDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKI 396

Query: 503 LLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
              M   G   +V+   +L+  Y   G++      L  M ++GI  NN+I   +  +  K
Sbjct: 397 FYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAK 456

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            A+ + A  +     +     D+V Y  ++  L +
Sbjct: 457 KAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCK 491



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 153/370 (41%), Gaps = 44/370 (11%)

Query: 237 AYNRVIQYLAKADKL----EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
            Y+ ++ YL K  K     ++ YC  +K +  +  I    Y +L+  +  +G      ++
Sbjct: 376 TYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTI----YGILLHGYAARGAIADLTDL 431

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            + M     S +   + +++ + AK   +D A+ +F  M +    P    +  L+D++ K
Sbjct: 432 LDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCK 491

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            GR+D ++  + +M   G  P++ ++ SL+       + + A  L+ EM   G RPN   
Sbjct: 492 LGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVF 551

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           F  I+ +    G++ +A  +   MER G  P   +Y+ L+  H  +G+ D A +L + M 
Sbjct: 552 FNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMV 611

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDH 532
           S GL+P L +Y  LL                                    Y K G +D+
Sbjct: 612 SVGLKPDLISYDTLLR----------------------------------GYCKTGRIDN 637

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A    R M   G+         + +       +  AK L    ++S  + D+  Y  +L 
Sbjct: 638 AYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILN 697

Query: 593 HLVR--CQDE 600
            L +  C DE
Sbjct: 698 GLCKTNCVDE 707



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 151/360 (41%), Gaps = 42/360 (11%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L D L +    D  +  F++M++D  + N +     +N ++  L   D+ E +   F
Sbjct: 482 YGILIDALCKLGRVDDAVLKFNQMINDGVTPNSV----VFNSLVYGLCTVDRWEKAEELF 537

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK---------------GECSL 303
            ++ D   + +   +N +M    N+G    A  + +SME+               G C L
Sbjct: 538 FEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHC-L 596

Query: 304 DGST---------------------YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
            G T                     Y+ ++    K+GR+D A  LF+EM  +   P    
Sbjct: 597 AGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVT 656

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           +++++  +    R   + ++Y+ M   G +     Y  ++    K   +D A +++  + 
Sbjct: 657 YSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLC 716

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
               RPN   FT++I+   K G+   AM +F  +   G +P   TY  +++     G +D
Sbjct: 717 SKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLD 776

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
               L+ +M  +G  P      A++  L  R  +  A   L ++  M +S++ S + +L+
Sbjct: 777 EFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLI 836



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 172/403 (42%), Gaps = 23/403 (5%)

Query: 309 ELMIPSLAKSGRL--DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS---MKVY 363
           E +I   A+SG L  D A+KLF E+       S   F  L++ + +A    TS   + ++
Sbjct: 16  ERVIADRARSGSLGIDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLF 75

Query: 364 MEM-QGCGH--RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             M + C +  RP    Y  L   + + G+++     +  +   G+R N  +   ++   
Sbjct: 76  NRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGL 135

Query: 421 AKSGKLDIAMSIF-TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG---L 476
             + ++D AM I    M   G +P   + + LL+   +  +V+ A++L ++M   G    
Sbjct: 136 CDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNC 195

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
            P + TY  ++  L K + VD A  +L  M   G  +DV + S ++    K  +VD A  
Sbjct: 196 TPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEG 255

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L+ M   G++ +      + +   K    + A+ +L+  ++   K D+V Y +++  L 
Sbjct: 256 VLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLC 315

Query: 596 RCQ--DEQNERHLMAILSATKHKAHAFLCGL--FTGPEQRKQPVLSFVREFFHGIDYELE 651
           + Q  D  +      I    K     + C +  +    + K+ V      +  G+D ++ 
Sbjct: 316 KAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDV- 374

Query: 652 EGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVF 694
                   ++LL+YL   G+   AR ++       + P   ++
Sbjct: 375 -----VTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIY 412



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 105/218 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +++   K  +++ +YC F+++L         +Y+ ++    +     +A E+Y +M
Sbjct: 621 SYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNM 680

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     D  TY +++  L K+  +D A K+FQ +  ++ RP+   F  ++D + K GR 
Sbjct: 681 IKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRK 740

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +M ++  +   G  P+   Y  ++++  + G LD    L+  M  +G  P+  +   I
Sbjct: 741 KDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAI 800

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           I S    G++  A +  + ++   F    ST S L+ +
Sbjct: 801 IRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISL 838



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 123/298 (41%), Gaps = 5/298 (1%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY ++     + GR++     F  + +  +R +  +   L++ +  A R+D +M + 
Sbjct: 89  DLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDIL 148

Query: 364 M-EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG---FRPNFGLFTMIIES 419
           +  M   G  P+     +L++      +++ AL L   M   G     PN   +  II+ 
Sbjct: 149 LRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDG 208

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K+  +D A  +   M   G      TYS +++    +  VD A  +   M   G++P 
Sbjct: 209 LCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPD 268

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
           + TY  ++  L K + VD A  +L  M   G   DV   + ++  + K  +VD A   L+
Sbjct: 269 VVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQ 328

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            M    ++ +      L    +    ++     LE         D+V Y+ +L +L +
Sbjct: 329 HMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCK 386


>gi|168040538|ref|XP_001772751.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675976|gb|EDQ62465.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 526

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 193/470 (41%), Gaps = 80/470 (17%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  +  +L ++R FD + +L D+M  D  +   ++F     VI+   KA+++E S   F 
Sbjct: 2   YSTMLRLLGDARRFDYLWALLDDMKRDGHRVTPTIFLG---VIRSYVKANQIEDSLKTFH 58

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +   DCK  T  YN ++ +    G   +A +++ SM    C+ D  TY +MI  + K+G
Sbjct: 59  AMDKYDCKPTTLVYNSMIDILRTSGDYVQAEKLFRSMNPSSCAPDTITYTMMIDCMGKAG 118

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            + AA  LFQEM    ++ +   ++SL+ S+ KAGR+  +  +   M+  G  P+   Y 
Sbjct: 119 HIQAAFDLFQEMHRMGYKANVITYSSLIRSLCKAGRISEACNLLSGMRINGCNPNDVTYN 178

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPN------------------------------ 409
            LI     AG+ D     + EM+  G  PN                              
Sbjct: 179 GLIVGLGGAGQADLVCSYYKEMKSFGLIPNLPTQAVVISSLVRIGKLSEAHSLFQTAALK 238

Query: 410 -----FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
                F +   ++ S  KS + ++    F D +++G++P+    S L+   +  G V  A
Sbjct: 239 SSTFDFDVMKSVVGSLCKSNRCEVGFKFFQDAKKSGYVPSSGACSVLIYSLSKVGMVAEA 298

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAK--------------------------RKLVDV 498
           + +Y   T  G+ P L    AL   L K                           +LVD+
Sbjct: 299 LCVYGESTRGGVSPDLMALNALTNSLVKEEKLEAAIDVVRFINKHRIGDDAYAHERLVDL 358

Query: 499 AAK-------ILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGI----R 546
             K       I  E+   G++ +V   + L+  + + G ++ AL+    M S       R
Sbjct: 359 LCKTHRFEDVISQELPKQGFAPNVHLYNKLIYQLGEAGRINDALKTFERMCSESCYPDTR 418

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           T N ++  L     K  L   A  L E   E   K +L  Y  ++ HLVR
Sbjct: 419 TYNVVI-NLLGGVGKVDL---AHQLFEQMKEKGCKPNLQTYNIMVGHLVR 464



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 160/402 (39%), Gaps = 45/402 (11%)

Query: 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN 230
           L+   D   +  LFR     S   P    Y M+ D + ++        LF EM     K 
Sbjct: 79  LRTSGDYVQAEKLFRSMNPSSC-APDTITYTMMIDCMGKAGHIQAAFDLFQEMHRMGYKA 137

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
            +  +S+   +I+ L KA ++  +      +  + C  +  +YN L+      G      
Sbjct: 138 NVITYSS---LIRSLCKAGRISEACNLLSGMRINGCNPNDVTYNGLIVGLGGAGQADLVC 194

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
             Y+ M+      +  T  ++I SL + G+L  A  LFQ    ++    F++  S+V S+
Sbjct: 195 SYYKEMKSFGLIPNLPTQAVVISSLVRIGKLSEAHSLFQTAALKSSTFDFDVMKSVVGSL 254

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K+ R +   K + + +  G+ PS+     LI S +K G +  AL ++ E    G  P+ 
Sbjct: 255 CKSNRCEVGFKFFQDAKKSGYVPSSGACSVLIYSLSKVGMVAEALCVYGESTRGGVSPDL 314

Query: 411 GLFTMIIESHAKSGKLDIAMSI----------------------------FTD-----ME 437
                +  S  K  KL+ A+ +                            F D     + 
Sbjct: 315 MALNALTNSLVKEEKLEAAIDVVRFINKHRIGDDAYAHERLVDLLCKTHRFEDVISQELP 374

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           + GF P    Y+ L+     +G+++ A+K +  M S    P   TY  ++ LL     VD
Sbjct: 375 KQGFAPNVHLYNKLIYQLGEAGRINDALKTFERMCSESCYPDTRTYNVVINLLGGVGKVD 434

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRF 539
           +A ++  +MK  G   ++   +++        V H +R  R+
Sbjct: 435 LAHQLFEQMKEKGCKPNLQTYNIM--------VGHLVRAGRY 468



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 119/261 (45%), Gaps = 4/261 (1%)

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
           ++++++  +G A R D    +  +M+  GHR +  +++ +I SY KA +++ +L+ +  M
Sbjct: 1   MYSTMLRLLGDARRFDYLWALLDDMKRDGHRVTPTIFLGVIRSYVKANQIEDSLKTFHAM 60

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
                +P   ++  +I+    SG    A  +F  M  +   P   TY+ +++    +G +
Sbjct: 61  DKYDCKPTTLVYNSMIDILRTSGDYVQAEKLFRSMNPSSCAPDTITYTMMIDCMGKAGHI 120

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDV 520
            +A  L+  M   G +  + TY++L+  L K   +  A  +L  M+  G +  DV+ + +
Sbjct: 121 QAAFDLFQEMHRMGYKANVITYSSLIRSLCKAGRISEACNLLSGMRINGCNPNDVTYNGL 180

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           ++     G  D    + + M S G+  N      +  S ++      A  L +T    ++
Sbjct: 181 IVGLGGAGQADLVCSYYKEMKSFGLIPNLPTQAVVISSLVRIGKLSEAHSLFQTAALKSS 240

Query: 581 KVDLVLYTSVLAHLV---RCQ 598
             D  +  SV+  L    RC+
Sbjct: 241 TFDFDVMKSVVGSLCKSNRCE 261



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 111/254 (43%), Gaps = 6/254 (2%)

Query: 225 HDSSKNGISLFSAYNRVIQY-LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
            D+ K+G    S    V+ Y L+K   +  + C + +        D  + N L    + +
Sbjct: 268 QDAKKSGYVPSSGACSVLIYSLSKVGMVAEALCVYGESTRGGVSPDLMALNALTNSLVKE 327

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
                A ++   + K     D   +E ++  L K+ R +  I   QE+ ++ F P+ +++
Sbjct: 328 EKLEAAIDVVRFINKHRIGDDAYAHERLVDLLCKTHRFEDVIS--QELPKQGFAPNVHLY 385

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
             L+  +G+AGR++ ++K +  M      P    Y  +I      GK+D A +L+++M+ 
Sbjct: 386 NKLIYQLGEAGRINDALKTFERMCSESCYPDTRTYNVVINLLGGVGKVDLAHQLFEQMKE 445

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH--ASSGQV 461
            G +PN   + +++    ++G+  +   +  +M      P       +L+ H  AS G  
Sbjct: 446 KGCKPNLQTYNIMVGHLVRAGRYQLGPKLCREMVANHIEPREGALK-ILQFHEKASGGHD 504

Query: 462 DSAMKLYNSMTSAG 475
           + AM   + +   G
Sbjct: 505 ELAMTCMDILKGDG 518



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 2/244 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F     V+  L K+++ E+ +  F+    S     + + +VL+      G+  +A  +Y 
Sbjct: 244 FDVMKSVVGSLCKSNRCEVGFKFFQDAKKSGYVPSSGACSVLIYSLSKVGMVAEALCVYG 303

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
              +G  S D      +  SL K  +L+AAI + + + +            LVD + K  
Sbjct: 304 ESTRGGVSPDLMALNALTNSLVKEEKLEAAIDVVRFINKHRIGDDAYAHERLVDLLCKTH 363

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R +  +   +  QG    P+  +Y  LI    +AG+++ AL+ ++ M      P+   + 
Sbjct: 364 RFEDVISQELPKQG--FAPNVHLYNKLIYQLGEAGRINDALKTFERMCSESCYPDTRTYN 421

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I      GK+D+A  +F  M+  G  P   TY+ ++     +G+     KL   M + 
Sbjct: 422 VVINLLGGVGKVDLAHQLFEQMKEKGCKPNLQTYNIMVGHLVRAGRYQLGPKLCREMVAN 481

Query: 475 GLRP 478
            + P
Sbjct: 482 HIEP 485



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 7/145 (4%)

Query: 196 GDECYV--MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           GD+ Y    L D+L ++  F+ ++S   E+        + L   YN++I  L +A ++  
Sbjct: 346 GDDAYAHERLVDLLCKTHRFEDVIS--QELPKQGFAPNVHL---YNKLIYQLGEAGRIND 400

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F+++    C  DT++YNV++ L    G    A +++E M++  C  +  TY +M+ 
Sbjct: 401 ALKTFERMCSESCYPDTRTYNVVINLLGGVGKVDLAHQLFEQMKEKGCKPNLQTYNIMVG 460

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRP 338
            L ++GR     KL +EM   +  P
Sbjct: 461 HLVRAGRYQLGPKLCREMVANHIEP 485


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 189/406 (46%), Gaps = 42/406 (10%)

Query: 167 ITQALKVINDSD-TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           I + LK ++++   +LS FRWA++Q  +    E Y +L + L + + F+ + +L    V 
Sbjct: 125 IVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNL----VS 180

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
           D  + GI     +  + +  A+A K++ +   F+K+     ++    +N L+        
Sbjct: 181 DMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRN 240

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE------------ 333
             KA E+++ M+ G    D  +Y +++    +   L    ++++EM++            
Sbjct: 241 VKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGI 300

Query: 334 -----------------------RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
                                  +N +PS ++F +L++ +G   RL  +++ + +++  G
Sbjct: 301 LINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSG 360

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P AP Y +++ +Y  + K+  A R+ DEMR +G  PN   + +I+    K  K   A 
Sbjct: 361 FAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAY 420

Query: 431 SIFTDMERA-GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           S+F  M R  G  PT STY  ++ M  +  +VD A+++++ M + G+ PG+  ++ L+  
Sbjct: 421 SVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINS 480

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHAL 534
           L     ++ A     EM  +G     +  S++    + DG  D AL
Sbjct: 481 LCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTAL 526


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 186/425 (43%), Gaps = 22/425 (5%)

Query: 148 GP-ELETQLDK------LQFVPKMVH-ITQALKVINDSDTSLSLFRWAKRQSWYVPGDEC 199
           GP ++E++LD       ++  P  V  + +++++    D +L  F WA +Q  Y    +C
Sbjct: 40  GPVDMESRLDLFCNKFLIKLSPNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNLQC 99

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF---SAYNRVIQYLAKADKLEMSYC 256
           YV   DVL  + D D + S+F +        G+      SA N +I+       +E    
Sbjct: 100 YVSSIDVLAINGDLDNVKSVFCKF------RGMGFLMNVSAANSLIKSFGSLGMVEELLW 153

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            ++ + ++  +    +YN L+   +N      A  + E ME G+   D  TY  MI    
Sbjct: 154 VWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYC 213

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           + G+   A + F++M+ RN  P    + +L+ +    G  D  + +Y EM   G      
Sbjct: 214 QVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPH 273

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y  +I    K GK      ++++M   G + N  ++T +I+S+AK G +  AM +F  M
Sbjct: 274 AYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERM 333

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           ++ G  P   TY  ++     SG++D AM+        G+      Y++L+  L K   V
Sbjct: 334 KKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRV 393

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG----IRTNNFI 551
             A K+  EM   G   D    + L+    K G  D AL + + M   G    + T   +
Sbjct: 394 HEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIM 453

Query: 552 VRQLF 556
           +  LF
Sbjct: 454 INGLF 458



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 197/438 (44%), Gaps = 20/438 (4%)

Query: 103 IYTGKGIRSVEPG-FDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFV 161
           ++ G     VEP  F  + ++ G+       SA  +++EV+   K GP++ T    ++  
Sbjct: 154 VWRGMKENGVEPSLFTYNFLLNGLVNSVFIESA-ERVLEVMENGKIGPDVVTYNTMIKGY 212

Query: 162 PKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFD 221
            ++    +A +   D +                P    Y+ L        DFD  LSL+ 
Sbjct: 213 CQVGKTQKAFEKFRDMELR-----------NVAPDKITYMTLIQACYAEGDFDLCLSLYH 261

Query: 222 EMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           EM     +NG+ +   AY+ VI  L K  K    Y  F+K++   CK++   Y  L+   
Sbjct: 262 EM----DENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSN 317

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   +A  ++E M+K     D  TY +++  + KSGRLD A++  +  +      + 
Sbjct: 318 AKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNA 377

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
            +++SL+D +GKAGR+  + K++ EM   G  P +  Y +LI++ AK GK D AL  +  
Sbjct: 378 MLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKR 437

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M   G       +T++I    +  K + A+ ++  M   G  PT + +  L      SG+
Sbjct: 438 MEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGK 497

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           V  A KL + +   G+ P  + +  +L +L K   +  A K+       G  +      V
Sbjct: 498 VARACKLLDELAPMGVIPE-TAFEDMLNVLCKAGRIKEACKLADGFVDRGREIPGRVRTV 556

Query: 521 LMVYI-KDGSVDHALRWL 537
           L+  + K G+ D AL+ +
Sbjct: 557 LINALRKAGNADLALKLM 574



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 92/223 (41%), Gaps = 1/223 (0%)

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           YVS I+  A  G LD    ++ + R  GF  N      +I+S    G ++  + ++  M+
Sbjct: 100 YVSSIDVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMK 159

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P+  TY+ LL    +S  ++SA ++   M +  + P + TY  ++    +     
Sbjct: 160 ENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQ 219

Query: 498 VAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A +   +M+    + D ++   ++     +G  D  L     M  +G+         + 
Sbjct: 220 KAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVI 279

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
               K         + E  ++   KV++ +YT+++    +C +
Sbjct: 280 GGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGN 322



 Score = 42.4 bits (98), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 43/209 (20%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           Y  L D L ++        LF+EMV    K G    S  YN +I  LAK  K + +   F
Sbjct: 380 YSSLIDGLGKAGRVHEAEKLFEEMV----KKGCPPDSYCYNALIDALAKCGKTDEALAFF 435

Query: 259 KKVLDSDCKIDTQSYNVLMT----------------LFLNKGLPYKAFEIYESMEKGECS 302
           K++ D  C     +Y +++                 + ++KG+   A   + ++  G C 
Sbjct: 436 KRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTA-AAFRALSIGLC- 493

Query: 303 LDG--------------------STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           L G                    + +E M+  L K+GR+  A KL     +R       +
Sbjct: 494 LSGKVARACKLLDELAPMGVIPETAFEDMLNVLCKAGRIKEACKLADGFVDRGREIPGRV 553

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
              L++++ KAG  D ++K+     G G+
Sbjct: 554 RTVLINALRKAGNADLALKLMHSKIGIGY 582


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/511 (20%), Positives = 217/511 (42%), Gaps = 34/511 (6%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
           V  +  V++ + WG  LE  L+    +P+   +   ++ + D   +L  FRW +R++  +
Sbjct: 70  VHDVCRVLDTYPWGAALEDALNTFDEMPQPELVVGVIRRLKDVRVALHYFRWVERKTKQL 129

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEM----VHDSSKNGISL---------------- 234
              E Y  L  ++  +R+ + +  + +EM       S+   I +                
Sbjct: 130 HSPEAYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGV 189

Query: 235 ------------FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
                       +SAY  +I  L+ A + +      +++ +   ++    +  L+ +F  
Sbjct: 190 IETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAR 249

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           +G    A  + + M+    + D   Y + I    K G++D A K F E+K +   P    
Sbjct: 250 EGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVT 309

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           F S++  + KA R+D +++++ E+      P    Y ++I  Y   GK + A  L +  +
Sbjct: 310 FTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQK 369

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             G  P+   +  I+    + GK++ A+ I   M +    P  ++Y+ L++M   +G+++
Sbjct: 370 RKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM-KMDAAPNLTSYNILIDMLCKAGELE 428

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVL 521
           +A+K+ +SM  AGL P + T   ++  L K + +D A  I L +     + D V+   ++
Sbjct: 429 AALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLI 488

Query: 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
               + G V+ A      M  SG   N  +   L  +  K    E    + +  +     
Sbjct: 489 DGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCS 548

Query: 582 VDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
            DL+L  + +  + +  + +  R L   + A
Sbjct: 549 PDLMLLNNYMDCVFKAGEIEKGRALFEEIKA 579



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/462 (23%), Positives = 196/462 (42%), Gaps = 41/462 (8%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           +   D +   F   K Q   VP D  +  +  VL ++   D  + LF+E+  DS+K+ + 
Sbjct: 285 VGKVDMAWKFFHELKSQGL-VPDDVTFTSMIGVLCKAERVDEAVELFEEL--DSNKS-VP 340

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
              AYN +I       K   +Y   ++     C     +YN ++T    KG   +A  I 
Sbjct: 341 CVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIL 400

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP---SFNI-------- 342
           E+M K + + + ++Y ++I  L K+G L+AA+K+   MKE    P   + NI        
Sbjct: 401 EAM-KMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKA 459

Query: 343 ------------------------FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
                                   F SL+D +G+ G+++ +  +Y +M   G  P+A +Y
Sbjct: 460 QRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVY 519

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SLI ++ K G+ +   +++ EM   G  P+  L    ++   K+G+++   ++F +++ 
Sbjct: 520 TSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKA 579

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P   +YS L+      G      KL+  M   GL      Y  ++    K   V+ 
Sbjct: 580 QGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNK 639

Query: 499 AAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A ++L EMKT G     V+   V+    K   +D A        S  +  N  +   L +
Sbjct: 640 AYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLID 699

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              K    + A  +LE  ++     +   +  +L  LV+ ++
Sbjct: 700 GFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEE 741



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 146/301 (48%), Gaps = 4/301 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            R  DG   ++ EM+H      + L + Y   +  + KA ++E     F+++       D
Sbjct: 530 GRKEDGH-KIYKEMMHRGCSPDLMLLNNY---MDCVFKAGEIEKGRALFEEIKAQGLTPD 585

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            +SY++L+   +  G     ++++  M++    LD   Y ++I    KSG+++ A +L +
Sbjct: 586 VRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLE 645

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EMK +  +P+   + S++D + K  RLD +  ++ E +      +  +Y SLI+ + K G
Sbjct: 646 EMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVG 705

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++D A  + +E+   G  PN   +  ++++  K+ ++D A+  F +M+     P   TYS
Sbjct: 706 RIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYS 765

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            ++       + + A   +  M   GL+P   TYT +++ LA+   V  A  +    K+ 
Sbjct: 766 IMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSS 825

Query: 510 G 510
           G
Sbjct: 826 G 826



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 127/255 (49%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I  L K    + +Y  F ++ +    +DT++YN+++  F   G   KA+++ E M
Sbjct: 588 SYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEM 647

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +         TY  +I  LAK  RLD A  LF+E K +    +  +++SL+D  GK GR+
Sbjct: 648 KTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRI 707

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  +  E+   G  P+   +  L+++  KA ++D AL  +  M+     PN   ++++
Sbjct: 708 DEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIM 767

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K  K + A   + +M++ G  P   TY+ ++   A  G V  A  L+    S+G 
Sbjct: 768 VNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGG 827

Query: 477 RPGLSTYTALLTLLA 491
            P  + Y A++  L+
Sbjct: 828 IPDSACYNAMIEGLS 842



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 162/354 (45%), Gaps = 5/354 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            P    +  L D L      +    L+++M+ DS +   ++   Y  +I+   K  + E 
Sbjct: 478 TPDSVTFCSLIDGLGRHGKVNDAYMLYEKML-DSGQTPNAV--VYTSLIRNFFKCGRKED 534

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
            +  +K+++   C  D    N  M      G   K   ++E ++    + D  +Y ++I 
Sbjct: 535 GHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIH 594

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K G      KLF EMKE+        +  ++D   K+G+++ + ++  EM+  G +P
Sbjct: 595 GLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQP 654

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y S+I+  AK  +LD A  L++E +      N  +++ +I+   K G++D A  I 
Sbjct: 655 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLIL 714

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            ++ + G  P   T++CLL+    + ++D A+  + +M +    P   TY+ ++  L K 
Sbjct: 715 EELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKV 774

Query: 494 KLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL-RFMGSSGI 545
           +  + A     EM+  G   + ++ + ++    + G+V  A     RF  S GI
Sbjct: 775 RKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGI 828


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 158/332 (47%), Gaps = 2/332 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N VI +L K  +L  +   F ++    C  D  +YN L+  +   G   +   +   M 
Sbjct: 202 FNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMR 261

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K  C+ D  TY  +I   +K G ++ A   F EMK      +    ++ VD+  K G + 
Sbjct: 262 KSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVR 321

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +MK++ +M+  G  P+   Y SL++   KAG+LD A+ L DEM   G  PN   +T+++
Sbjct: 322 EAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMV 381

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K GK+ +A  + + MERAG       Y+ L+  H  +   + A+ L N M + G+ 
Sbjct: 382 DGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGME 441

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
             +S Y  L+  L K + +D A  +L +M   G   + V  + ++  + K G    A+  
Sbjct: 442 LDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVAL 501

Query: 537 LRFMGSSGIRTNNFIVRQLFES-CMKNALYES 567
           L  +  SG++ N      L +  C   ++YE+
Sbjct: 502 LHKIPDSGLQPNVVTYCALIDGLCKAGSIYEA 533



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 171/412 (41%), Gaps = 36/412 (8%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    K  +LE       ++  S C  D  +YN L+  F   G   KA+  +  M+
Sbjct: 237 YNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMK 296

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     +  T    + +  K G +  A+KLF +M+ R   P+   + SLVD   KAGRLD
Sbjct: 297 RLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLD 356

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  EM   G  P+   Y  +++   K GK+  A  +   M  AG + N  L+T +I
Sbjct: 357 DAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLI 416

Query: 418 ESH-----------------------------------AKSGKLDIAMSIFTDMERAGFL 442
             H                                    K  KLD A S+   M+  G  
Sbjct: 417 HGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLR 476

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P    Y+ +++    +G+   A+ L + +  +GL+P + TY AL+  L K   +  A   
Sbjct: 477 PNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISH 536

Query: 503 LLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             +M+ +G   +V     L+  + K GS+  A+  +  M   G+  +  +   L +  MK
Sbjct: 537 FDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMK 596

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
               + A  L    +E+  ++DL  YT  ++        Q  R +++ +  T
Sbjct: 597 QGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGT 648



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 159/347 (45%), Gaps = 6/347 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R    +P +  Y  L D   ++   D  + L DEMVH   +  +     Y  ++  L K 
Sbjct: 331 RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVH---QGLVPNVVTYTVMVDGLCKE 387

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEIYESMEKGECSLDGST 307
            K+ ++      +  +  K +   Y  L+   F+NK    +A ++   M+     LD S 
Sbjct: 388 GKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKN-SERALDLLNEMKNKGMELDVSL 446

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  +I  L K  +LD A  L  +M +   RP+  I+ +++D+  KAG+   ++ +  ++ 
Sbjct: 447 YGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIP 506

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G +P+   Y +LI+   KAG +  A+  +D+MR  G  PN  ++T +I+   K G L 
Sbjct: 507 DSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLS 566

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+ +  +M   G       Y+ L++ H   G +  A  L   M   GL+  L  YT  +
Sbjct: 567 KAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFI 626

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           +      ++  A  +L EM   G + D +A + L+  Y K G+++ A
Sbjct: 627 SGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEA 673



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 151/326 (46%), Gaps = 1/326 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++N+++     +G   +A  ++  M+   CS D  TY  +I    K G L+    L  EM
Sbjct: 201 TFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEM 260

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           ++         + +L++   K G ++ +   + EM+  G   +     + ++++ K G +
Sbjct: 261 RKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLV 320

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A++L+ +MR+ G  PN   +T +++   K+G+LD A+ +  +M   G +P   TY+ +
Sbjct: 321 REAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVM 380

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++     G+V  A  + + M  AG++     YT L+      K  + A  +L EMK  G 
Sbjct: 381 VDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGM 440

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
            +DVS    L+    K   +D A   L  M   G+R N  I   + ++  K      A  
Sbjct: 441 ELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVA 500

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           LL    +S  + ++V Y +++  L +
Sbjct: 501 LLHKIPDSGLQPNVVTYCALIDGLCK 526



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 5/336 (1%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           ++ L++L  + GL   A      + +     +  T   ++  LA++ +     +LF+ + 
Sbjct: 136 FDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHLP 195

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
             N   +FNI   ++D + K G L  +  +++ M+  G  P    Y SLI+ Y K G+L+
Sbjct: 196 APNVF-TFNI---VIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELE 251

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
               L  EMR +G   +   +  +I   +K G ++ A S F +M+R G +    T S  +
Sbjct: 252 EVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFV 311

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           +     G V  AMKL+  M   G+ P   TYT+L+    K   +D A  +L EM   G  
Sbjct: 312 DAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLV 371

Query: 513 VDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            +V    V++  + K+G V  A   L  M  +G++ N  +   L      N   E A  L
Sbjct: 372 PNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDL 431

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           L        ++D+ LY +++  L + Q     + L+
Sbjct: 432 LNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLL 467



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 111/257 (43%), Gaps = 3/257 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L L +EM +   +  +SL   Y  +I  L K  KL+ +     K+ D   + +T  Y  +
Sbjct: 429 LDLLNEMKNKGMELDVSL---YGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTI 485

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  F   G   +A  +   +       +  TY  +I  L K+G +  AI  F +M+E   
Sbjct: 486 MDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGL 545

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+  ++ +L+D   K G L  ++ +  EM   G      +Y SLI+ + K G L  A  
Sbjct: 546 DPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFA 605

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +M   G + +   +T  I        +  A  + ++M   G  P  + Y+CL+  + 
Sbjct: 606 LKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQ 665

Query: 457 SSGQVDSAMKLYNSMTS 473
             G ++ A  L N M S
Sbjct: 666 KLGNMEEASSLQNEMES 682


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 197/420 (46%), Gaps = 13/420 (3%)

Query: 184 FRWAKRQSWY---VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNR 240
           F   KR  +Y   +    C  ++  +L E+R  D +  ++ EM+    +  +  F   N 
Sbjct: 173 FEAFKRSGYYGYKLSALSCKPLMIALLKENRSAD-VEYVYKEMIRRKIQPNVFTF---NV 228

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL---NKGLPYKAFEIYESME 297
           VI  L K  K+  +    + +    C  +  SYN L+  +      G  YKA  + + M 
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           + + S + +T+ ++I    K   L  ++K+F+EM +++ +P+   + SL++ +   G++ 
Sbjct: 289 ENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKIS 348

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  +M   G +P+   Y +LI  + K   L  AL ++  ++  G  P   ++ M+I
Sbjct: 349 EAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLI 408

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +++ K GK+D   ++  +MER G +P   TY+CL+     +G +++A KL++ +TS GL 
Sbjct: 409 DAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL- 467

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P L T+  L+    ++     AA +L EM  MG        +++M  Y K+G++  A   
Sbjct: 468 PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNM 527

Query: 537 LRFMGSS-GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
              M     +R N      L +   +    E A  LL   +E     + + Y  V   +V
Sbjct: 528 RTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMV 587



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 176/426 (41%), Gaps = 28/426 (6%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SL 234
           D D  L  + W  + S      E    L   L  ++ +  + S  D  V + S + + S+
Sbjct: 80  DPDLCLRYYSWLVKNSDISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSI 139

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F A               +S C      D+ C +++   ++L+  + N       FE ++
Sbjct: 140 FHA---------------ISMC------DNVC-VNSIIADMLVLAYANNSRFELGFEAFK 177

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
                   L   + + ++ +L K  R      +++EM  R  +P+   F  +++++ K G
Sbjct: 178 RSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTG 237

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK---AGKLDTALRLWDEMRIAGFRPNFG 411
           +++ +  V  +M+  G  P+   Y +LI+ Y K    GK+  A  +  EM      PN  
Sbjct: 238 KMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLT 297

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            F ++I+   K   L  +M +F +M      P   +Y+ L+    + G++  A+ + + M
Sbjct: 298 TFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKM 357

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSV 530
            SAG++P L TY AL+    K  ++  A  +   +K  G        ++L+  Y K G +
Sbjct: 358 VSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKI 417

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D        M   GI  +      L     +N   E+AK L +  + S    DLV +  +
Sbjct: 418 DDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQ-LTSKGLPDLVTFHIL 476

Query: 591 LAHLVR 596
           +    R
Sbjct: 477 MEGYCR 482



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 3/240 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    K D L+ +   F  V        T+ YN+L+  +   G     F + E M
Sbjct: 368 TYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+     D  TY  +I  L ++G ++AA KLF ++  +   P    F  L++   + G  
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGES 486

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFTM 415
             +  +  EM   G +P    Y  +++ Y K G L  A  +  +M +    R N   + +
Sbjct: 487 RKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNV 546

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV-DSAMKLYNSMTSA 474
           +++ +++ GKL+ A  +  +M   G +P   TY  + E     G V D    L+N  T +
Sbjct: 547 LLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVPDIEGHLFNVSTKS 606


>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 193/407 (47%), Gaps = 10/407 (2%)

Query: 167 ITQALKVI-NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           + Q LK   ND   +  +F+WAK Q  Y    E Y  + D+L ++++F  M  L DEM H
Sbjct: 199 VAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMVDILGKAKNFRLMWELVDEMNH 258

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
            +    +   S   +VI+ LA+A + + +   F+ +       DT + NVLM   + +  
Sbjct: 259 LAGSVSLETMS---KVIRRLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEAS 315

Query: 286 PYKAFEIYESMEKGECSL--DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
              A  ++  ++   CS+  + +++ ++I    K+ +LD A K+  E+++    P    +
Sbjct: 316 VEDAHNVFRELK---CSIPFNLASFNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISY 372

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            + +++  +        KV ++M+  G +P+   +  ++ +  KA +++ AL+++++M+ 
Sbjct: 373 TAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVYEKMKK 432

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G  P+   ++ +I    K+G+L     I  DME+ G  P   TY+ L+    +  Q ++
Sbjct: 433 EGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEET 492

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523
           A+ L   M     +P L TY  LL +  ++K + V   +L  M     S++     +L+ 
Sbjct: 493 ALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVR 552

Query: 524 YI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            + ++G +  A  +   M S  +   +   + L E   + ++ E  K
Sbjct: 553 GLCENGKLHLACSFFGEMLSKAMVPKDSTFKMLKEELERKSMLEEMK 599


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 173/383 (45%), Gaps = 5/383 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  ++ +  +P   C   LFD L +        + ++E++       +  F   N
Sbjct: 174 AIQCFRLVRKHNLQIPFHSCGY-LFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKF---N 229

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++  L K  K+  +   F ++     +    S+N L+  +   G   + F +   M + 
Sbjct: 230 VLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMEN 289

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K G+LD A KLF EM +R   P+   F +L++     GR D  
Sbjct: 290 RVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLG 349

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M   G +P    Y +LI    K G L  A +L  EM   G +P+   +TM+I+ 
Sbjct: 350 MEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDG 409

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A+ I  +M + G       ++ L+      GQV  A +    M  AG++P 
Sbjct: 410 CCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPD 469

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
            +TYT ++    K+  V    K+L EM+  G+   V   +VL+  + K G + +A   L 
Sbjct: 470 DATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLD 529

Query: 539 FMGSSGIRTNNFIVRQLFESCMK 561
            M + G+  ++     L E  ++
Sbjct: 530 AMLNLGVVPDDITYNILLERTLQ 552



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 153/345 (44%), Gaps = 3/345 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           ++VLM  + + G    A + +  + K    +   +   +   L K      A   ++E+ 
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +  + P    F  L+  + K  +++ +  ++ E+   G RP+   + +LI  Y K+G LD
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
              RL   M      P+   ++++I    K G+LD A  +F +M   G +P   T++ L+
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             H  +G+ D  M++Y  M   G++P + TY  L+  L K   +  A K+++EM   G  
Sbjct: 338 NGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK 397

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKP 570
            D     +L+    K+G ++ AL   + M   GI  +N     L    C +  + E+ + 
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           L E  +E+  K D   YT V+    +  D +    L+  +    H
Sbjct: 458 LRE-MLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGH 501



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 161/390 (41%), Gaps = 5/390 (1%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           + +++ +   SG    AI+ F+ +++ N +  F+    L D + K      +   Y E+ 
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
            CG+ P    +  L+    K  K++ A  L+ E+   G RP    F  +I  + KSG LD
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
               +   M      P   TYS L+      GQ+D A KL+  M   GL P   T+T L+
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIR 546
                    D+  +I  +M   G   DV   + L+  + K G +  A + +  M   G++
Sbjct: 338 NGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK 397

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR-CQDEQNERH 605
            + F    L + C K    ESA  + +  V+   ++D V +T++++   R  Q  + ER 
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 606 LMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNY 665
           L  +L A      A    +  G  ++      F        D  +  G   Y  NVLLN 
Sbjct: 458 LREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHV-PGVVTY--NVLLNG 514

Query: 666 LVLMGQINRARCVWKVAYENKLFPKAIVFD 695
           L   GQ+  A  +        + P  I ++
Sbjct: 515 LCKQGQMKNANMLLDAMLNLGVVPDDITYN 544



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 3/232 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP D  +  L +    +   D  + ++ +M+    K  +     YN +I  L K   L  
Sbjct: 327 VPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVI---TYNTLINGLCKVGDLRE 383

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++     K D  +Y +L+     +G    A EI + M K    LD   +  +I 
Sbjct: 384 AKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALIS 443

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              + G++  A +  +EM E   +P    +  ++    K G + T  K+  EMQ  GH P
Sbjct: 444 GFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVP 503

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
               Y  L+    K G++  A  L D M   G  P+   + +++E   ++ K
Sbjct: 504 GVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTLQAWK 555


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/491 (24%), Positives = 204/491 (41%), Gaps = 48/491 (9%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           + D  +YN L++    +GL  +A  ++ +M +G    D +TY  ++ +  K  RL+   +
Sbjct: 7   QADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSE 66

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           L +EM+     P    +  L+++  ++G +  +M V+ +MQG G  P+A  Y  L+  Y 
Sbjct: 67  LLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYG 126

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           + G+ D    L+ EM+++   PN   + ++I    + G     +++F DM      P   
Sbjct: 127 RHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNME 186

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TY  L+      G  + A K+   M   G+ P    YT ++    +  L + A      M
Sbjct: 187 TYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTM 246

Query: 507 KTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
             +G    V   + L+ ++ K G    +   L  MG SG+  N      + E+  +   +
Sbjct: 247 NEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQF 306

Query: 566 ESAKPLLETYVE-SAAKVD-------LVLYTSVLAHLVRCQDEQ-NERHLMAILSATK-- 614
           E A   ++ YVE   A+ D        VL     A LV   +EQ  E   + IL +    
Sbjct: 307 EEA---IKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCY 363

Query: 615 -------------HKAHAFLCGLFTGPEQRKQPVLSFVREFFHG----------IDYELE 651
                          AH  L  +FT    R   +   + +   G          ++Y  E
Sbjct: 364 CMMLAVYAKADRWDDAHQLLDEMFT---NRVSNIHQVIGQMIRGDYDDDSNWQMVEYVFE 420

Query: 652 ----EGAAR--YFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVR 705
               EG +    F N LL  L  +GQ  RA  V   A +  LFP+ +     + WS+DV 
Sbjct: 421 KLKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNEATKRGLFPE-LFRKNKLVWSVDVH 479

Query: 706 NLSVGAALIAV 716
            +  GAA  A+
Sbjct: 480 RMWEGAACTAI 490



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 104/475 (21%), Positives = 206/475 (43%), Gaps = 21/475 (4%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y  L +   +    + +  L  EM    S       ++YN +++  A++  ++ 
Sbjct: 42  LPDITTYSYLVETFGKLNRLEKVSELLKEM---ESGGSFPDITSYNVLLEAHAQSGSIKE 98

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F+++  + C  +  +Y++L+ L+   G      +++  M+      + +TY ++I 
Sbjct: 99  AMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILIN 158

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              + G     + LF +M E N  P+   +  L+ + GK G  + + K+ + M   G  P
Sbjct: 159 VFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVP 218

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           S+  Y  +IE+Y +A   + AL  ++ M   G +P    +  +I+  AK G    + +I 
Sbjct: 219 SSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAIL 278

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M ++G      T++ ++E     GQ + A+K Y  M  A   P   T  A+L++    
Sbjct: 279 LKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFA 338

Query: 494 KLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
            LV+ + +   E+K +G    V     +L VY K    D A + L  M ++ +   + ++
Sbjct: 339 GLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVI 398

Query: 553 RQLFESCM-KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
            Q+       ++ ++  + + E        + +  Y ++L  L      Q ER    +  
Sbjct: 399 GQMIRGDYDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLG--QKERATRVLNE 456

Query: 612 ATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYL 666
           ATK        GLF  PE  ++  L +  +      + + EGAA   ++V LN +
Sbjct: 457 ATKR-------GLF--PELFRKNKLVWSVDV-----HRMWEGAACTAISVWLNNM 497



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 1/262 (0%)

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M+    +     + +L+ +  + G  D +  V+  M   G  P    Y  L+E++ K  +
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNR 60

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           L+    L  EM   G  P+   + +++E+HA+SG +  AM +F  M+ AG +P  +TYS 
Sbjct: 61  LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSI 120

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           LL ++   G+ D    L+  M  +   P  +TY  L+ +  +         +  +M    
Sbjct: 121 LLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEEN 180

Query: 511 YSVDVSASDVLMVYIKDGSV-DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
              ++   + L+     G + + A + L  M   G+  ++     + E+  + ALYE A 
Sbjct: 181 VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEAL 240

Query: 570 PLLETYVESAAKVDLVLYTSVL 591
               T  E  +K  +  Y S++
Sbjct: 241 VAFNTMNEVGSKPTVETYNSLI 262


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 199/462 (43%), Gaps = 5/462 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN VI  L K  +L  +   FK++   +CK ++ +++ L+  F   G   + F + E M
Sbjct: 166 SYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEM 225

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           EK     D   Y  +I      G ++   +LF EM  +N  P+   ++ L++++ K  + 
Sbjct: 226 EKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKW 285

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++   M GC  RP    Y  L +  +K G+   A+++ D M   G  PN   +  I
Sbjct: 286 KEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAI 345

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-- 474
           I    K G++D A+ I   M + G  P   TYS L++     G++D A+ L N + S   
Sbjct: 346 INGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEF 405

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            ++P +  +  ++  L K++ +  A ++   M   G+  ++   ++L+  Y+  G +  A
Sbjct: 406 HIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKA 465

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L   +    SGI  N      L     K  +   AK L      S  +  +  Y +++A 
Sbjct: 466 LELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMAS 525

Query: 594 LVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEG 653
           L R    +  R+L   +    H        +      +   V S        ++  L   
Sbjct: 526 LCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPD 585

Query: 654 AARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFD 695
              +  ++L+N  + +GQ++ A  +++        P A++FD
Sbjct: 586 NITF--SILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFD 625



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 170/389 (43%), Gaps = 6/389 (1%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           L D L +++ +D ++S+  +M   +S +    F++ + +I+      K   ++     ++
Sbjct: 65  LIDNLRKAKHYDHVISVHSKM---ASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIM 121

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
                ++  ++N+L+  F   G  +KA +++  M++     D  +Y  +I  L K  RL 
Sbjct: 122 KRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLV 181

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A +LF+EMK    +P+   F++L+D   K G ++    +  EM+  G      +Y +LI
Sbjct: 182 EAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALI 241

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
             +   G ++    L++EM      PN   ++ ++ +  K  K   A  +   M      
Sbjct: 242 SGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVR 301

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P    Y+ L +  + +G+   A+K+ + M   G  P   TY A++  L K   VD A  I
Sbjct: 302 PDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGI 361

Query: 503 LLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSS--GIRTNNFIVRQLFESC 559
           L  M   G   DV     L+  +   G +D A+  L  + S    I+ + F    + +  
Sbjct: 362 LETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQEL 421

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYT 588
            K      AK +  T VE     ++V Y 
Sbjct: 422 CKQRRLRHAKRVYYTMVERGFPSNIVTYN 450



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 175/413 (42%), Gaps = 9/413 (2%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           ++   +I S   + +   A  +   + +R F  +   F  L+    ++G    +M ++  
Sbjct: 95  TSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCM 154

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M+     P    Y ++I    K  +L  A  L+ EM+    +PN   F+ +I+   K+G 
Sbjct: 155 MKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGD 214

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           ++    +  +ME+ G       YS L+    S G ++   +L+N M    + P + TY+ 
Sbjct: 215 VEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSC 274

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSG 544
           L+  L K++    AA++L  M       DV A  VL   + K+G    A++ L  M   G
Sbjct: 275 LMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRG 334

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
              NN     +     K    + A  +LET  +   K D+V Y++++  L          
Sbjct: 335 EEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAV 394

Query: 605 HLMAILSATKH--KAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV--N 660
            L+ +L + +   K   F   L    E  KQ  L   +  ++ +   +E G     V  N
Sbjct: 395 DLLNLLMSKEFHIKPDVFAFNLVI-QELCKQRRLRHAKRVYYTM---VERGFPSNIVTYN 450

Query: 661 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
           +L++  +  G++ +A  +WK A ++ + P A  +   I     ++ LS+   L
Sbjct: 451 ILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGL 503



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 115/235 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           A+N VIQ L K  +L  +   +  +++     +  +YN+L+  +L+ G   KA E+++  
Sbjct: 413 AFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDA 472

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S + +TY ++I  L K   L  A  LF + +    RP+ + + +L+ S+ +   +
Sbjct: 473 VDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSV 532

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +  ++ EM+   H P    +  +I+   KAG +++A  L  EM      P+   F+++
Sbjct: 533 EQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSIL 592

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           I    K G+LD A S++  M   G +P    +  LL+ ++  G+ +  + +   M
Sbjct: 593 INRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQM 647



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 100/487 (20%), Positives = 202/487 (41%), Gaps = 33/487 (6%)

Query: 68  KPNYVR------SYCSGKSGDGEKCNEWTEEIEYLDESGSVI--------YTGKGIRSVE 113
           KPN V        +C  K+GD E+     EE+E +   G V         +  KG   +E
Sbjct: 196 KPNSVTFSALIDGFC--KNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKG--DIE 251

Query: 114 PGFD--DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQAL 171
            G +  + ++   +    +  S +   +    +WK   ++   +   +  P +V  T   
Sbjct: 252 RGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLA 311

Query: 172 KVIND----SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
             ++     SD    L    KR     P +  Y  + + L +    D  L + + M    
Sbjct: 312 DGLSKNGRASDAIKVLDLMVKRGEE--PNNVTYNAIINGLCKEGRVDDALGILETMAKKG 369

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI--DTQSYNVLMTLFLNKGL 285
            K  +     Y+ +++ L    K++ +      ++  +  I  D  ++N+++     +  
Sbjct: 370 KKPDVV---TYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRR 426

Query: 286 PYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
              A  +Y +M E+G  S +  TY ++I     +G+L  A++L+++  +    P+   + 
Sbjct: 427 LRHAKRVYYTMVERGFPS-NIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYT 485

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
            L++ + K   L  +  ++ + +  G RP+   Y +L+ S  +   ++ A  L+ EMR A
Sbjct: 486 VLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNA 545

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
              P+   F +II+   K+G ++ A  +  +M     +P   T+S L+      GQ+D A
Sbjct: 546 NHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEA 605

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
             LY  M S G  P    + +LL   + +   +    +L +M      +D   +  ++  
Sbjct: 606 ASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILAC 665

Query: 525 IKDGSVD 531
           + + S D
Sbjct: 666 LCNMSKD 672



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 2/259 (0%)

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
           N  PS++   +L+D++ KA   D  + V+ +M      P      +LIES+    K   A
Sbjct: 54  NSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFA 113

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             +   +   GF  N   F ++++   +SG    AM +F  M+R   +P   +Y+ ++  
Sbjct: 114 FGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVING 173

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
                ++  A +L+  M     +P   T++AL+    K   V+    +L EM+ MG   D
Sbjct: 174 LCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGD 233

Query: 515 VSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           V     L+  +   G ++        M    +  N      L  +  K   ++ A  +L+
Sbjct: 234 VFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLD 293

Query: 574 TYVESAAKVDLVLYTSVLA 592
           T      + D+V YT VLA
Sbjct: 294 TMTGCKVRPDVVAYT-VLA 311


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 176/383 (45%), Gaps = 12/383 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMV---HDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
           Y ++ D   ++R+ +  L+   EM    H  + +      AY+ ++Q   K   +  +  
Sbjct: 101 YNIIIDGYCKARNIEKALAFLREMEELGHPPTPH------AYSSIVQSFCKTGNVSKAMD 154

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            F ++    C+ D  ++NVL++        ++A E++ SM    C  D  TY  MI  L 
Sbjct: 155 VFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLC 214

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           K  +LD A+ L + MK+ +  P+F  + +L+D + K  RL  + +V+ +M       + P
Sbjct: 215 KWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEP 274

Query: 377 MY--VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
            Y  + LI    KA +   A  ++ EMR  G  P    +  ++E    + KL  AM +  
Sbjct: 275 AYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTY 334

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M      P   TY  L+     + QV+ A KL ++M   G  P L  +  LL+ LA+  
Sbjct: 335 FMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAG 394

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +D A ++  EM  +     V +S++L+  I + GSVD A  +L+ M  +GI  + F   
Sbjct: 395 RLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYD 454

Query: 554 QLFESCMKNALYESAKPLLETYV 576
           +L          + A+ L+E  V
Sbjct: 455 KLVVGLCWQGKADQARKLVEELV 477



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 11/253 (4%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A  I E M+    S D  ++ L+I    KSG           M E    P+  ++ +L+
Sbjct: 12  QAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLI 71

Query: 348 DSMGKAGRLDTSMKVYMEM-QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
             + KAG L  +      M Q C   P+   Y  +I+ Y KA  ++ AL    EM   G 
Sbjct: 72  SCLCKAGMLAEAESYLKRMPQHCA--PNVVSYNIIIDGYCKARNIEKALAFLREMEELGH 129

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P    ++ I++S  K+G +  AM +F +M   G  P    ++ LL     + ++  A +
Sbjct: 130 PPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARE 189

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK 526
           L+ SM S G +P + TY  ++  L K K +D A  +L  MK      DVS + V    + 
Sbjct: 190 LFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMK----QEDVSPTFVTYTTL- 244

Query: 527 DGSVDHALRWLRF 539
              +DH  ++ R 
Sbjct: 245 ---IDHLCKFARL 254



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 2/243 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL--FLNKGLPYKAFEI 292
           F  Y  +I +L K  +L+ +Y  F+K+ +  C     +Y+VL+ +        P +A E+
Sbjct: 238 FVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEM 297

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           ++ M     S    TY  ++  L  + +L  A++L   M ++   P+   +  L+ S+ K
Sbjct: 298 FQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCK 357

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
             +++ + K+   M+  G  PS  ++  L+   A+AG+LD A  L+ EM     +   G 
Sbjct: 358 TDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGS 417

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
             ++++   + G +D A      M   G +P   TY  L+      G+ D A KL   + 
Sbjct: 418 SNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELV 477

Query: 473 SAG 475
             G
Sbjct: 478 RDG 480



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 137/327 (41%), Gaps = 4/327 (1%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN L++     G+  +A E Y       C+ +  +Y ++I    K+  ++ A+   +EM+
Sbjct: 67  YNNLISCLCKAGMLAEA-ESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREME 125

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           E    P+ + ++S+V S  K G +  +M V+ EM   G  P    +  L+    +A K+ 
Sbjct: 126 ELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIH 185

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A  L+  M   G +P+   +  +I    K  KLD A+ +   M++    PT  TY+ L+
Sbjct: 186 EARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLI 245

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL--LAKRKLVDVAAKILLEMKTMG 510
           +      ++  A +++  M           Y+ L+ +  L K +    A ++  EM+  G
Sbjct: 246 DHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRG 305

Query: 511 YSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            S  V   + L+   +    +  A+    FM       N F    L  S  K    E A 
Sbjct: 306 ISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAF 365

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVR 596
            LL    +      L ++  +L+ L R
Sbjct: 366 KLLSAMRDKGFVPSLKIWEVLLSRLAR 392



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 2/268 (0%)

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L ++  +  A  + +EMK   F P       L+    K+G           M   G 
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+A +Y +LI    KAG L  A      M      PN   + +II+ + K+  ++ A++
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRMP-QHCAPNVVSYNIIIDGYCKARNIEKALA 119

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
              +ME  G  PTP  YS +++    +G V  AM ++  M + G  P +  +  LL+ L 
Sbjct: 120 FLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLW 179

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNF 550
           + + +  A ++   M + G   DV   + ++  + K   +D A+  L  M    +     
Sbjct: 180 RARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFV 239

Query: 551 IVRQLFESCMKNALYESAKPLLETYVES 578
               L +   K A  + A  + E   E 
Sbjct: 240 TYTTLIDHLCKFARLQQAYEVFEKMAEG 267



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 2/216 (0%)

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I    +A  +  A  + +EM+ AGF P+     ++I    KSG      S    M  AG 
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P    Y+ L+     +G +  A      M      P + +Y  ++    K + ++ A  
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYCKARNIEKALA 119

Query: 502 ILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
            L EM+ +G+     A S ++  + K G+V  A+     M + G   +      L     
Sbjct: 120 FLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLW 179

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +      A+ L  +      K D+V Y +++A L +
Sbjct: 180 RARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCK 215


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 170/371 (45%), Gaps = 39/371 (10%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K  T  YN ++ +F   G+  +A  I + ME   C  D  TY  +  +  ++G LD  + 
Sbjct: 319 KPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMA 378

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           +   M  +   P+   + +++D+ GKAGR D +++++ +M+  G  P+   Y S++    
Sbjct: 379 VIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLG 438

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K  + +  +++  EM++ G  PN   +  ++   ++ GK +    +  +M+  GF P   
Sbjct: 439 KKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKD 498

Query: 447 TYSCLLEMHASSG-QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
           T++ L+  +A  G +VDSA K+Y  M  +G  P ++TY ALL  LA R     A  ++ +
Sbjct: 499 TFNTLISSYARCGSEVDSA-KMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQD 557

Query: 506 MKTMGYSV-DVSASDVLMVYIKDGSV----------------------------DHALRW 536
           M+T G+   + S S +L  Y K G+V                            +H  R 
Sbjct: 558 MQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRH 617

Query: 537 LRFMGSS-------GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           LR M  +       G + +  ++  +     +N ++  A+ +L    E   + +L  Y  
Sbjct: 618 LRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNC 677

Query: 590 VLAHLVRCQDE 600
           ++   VR +DE
Sbjct: 678 LMDLYVR-EDE 687



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 150/333 (45%), Gaps = 37/333 (11%)

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
           D + ++D Q   +++ +   +     A ++++ +   + SLD   Y  ++ + A+SG+  
Sbjct: 174 DQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYK 233

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR--------------------------- 355
            AI LF +M+     P+   +  ++D  GK GR                           
Sbjct: 234 RAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTV 293

Query: 356 ---------LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
                    LD + K   E++  G++P   MY S+++ + KAG    AL +  EM     
Sbjct: 294 ISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNC 353

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P+   +  +  ++ ++G LD  M++   M   G +P   TY+ +++ +  +G+ D A++
Sbjct: 354 PPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALR 413

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYI 525
           L++ M   G  P + TY ++L +L K+   +   K+L EMK  G + +  + + +L V  
Sbjct: 414 LFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCS 473

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
           ++G  ++  + LR M + G   +      L  S
Sbjct: 474 EEGKHNYVNKVLREMKNCGFEPDKDTFNTLISS 506



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 168/411 (40%), Gaps = 39/411 (9%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            D  +++ D M   +SK  +     Y  VI    KA + + +   F K+ D  C  +  +
Sbjct: 373 LDEGMAVIDTM---TSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYT 429

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN ++ +   K       ++   M+   C+ + +T+  M+   ++ G+ +   K+ +EMK
Sbjct: 430 YNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMK 489

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
              F P  + F +L+ S  + G    S K+Y EM   G  P    Y +L+ + A  G   
Sbjct: 490 NCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWK 549

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL----DIAMSIFTD------------- 435
            A  +  +M+  GF+PN   +++++  ++K+G +     +   I+               
Sbjct: 550 AAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLV 609

Query: 436 -----------MERA-------GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                      MERA       G+ P     + +L M + +     A ++ + +   GL+
Sbjct: 610 LSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQ 669

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P L TY  L+ L  +      A ++L  ++      D VS + V+  + + G +  A+R 
Sbjct: 670 PNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRV 729

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           L  M + GI+                 L++ A  ++   +E   +   + Y
Sbjct: 730 LSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTY 780



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 150/351 (42%), Gaps = 13/351 (3%)

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           EM  C F+         D  ++N L++ +   G    + ++Y  M K   +   +TY  +
Sbjct: 487 EMKNCGFEP--------DKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNAL 538

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           + +LA  G   AA  + Q+M+ + F+P+   ++ L+    KAG +    KV  E+     
Sbjct: 539 LNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQV 598

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            PS  +  +L+ S  K   L    R +D+++  G++P+  +   ++   +++     A  
Sbjct: 599 FPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKARE 658

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +   +   G  P   TY+CL++++    +   A ++   + ++   P + +Y  ++    
Sbjct: 659 MLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFC 718

Query: 492 KRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           ++ L+  A ++L EM T G     V+ +  L  Y      D A   +RFM     R +  
Sbjct: 719 RKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSEL 778

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
             + L +   K   +E A      +V    ++D+      +  L  C  E+
Sbjct: 779 TYKILVDGYCKAGKHEEAM----DFVTKIKEIDISFDDKSVKRLGSCIREK 825



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 97/200 (48%), Gaps = 2/200 (1%)

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A +L+D + +  +  +   +T I+ ++A+SGK   A+ +F  ME  G  PT  TY+ +L+
Sbjct: 200 ASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLD 259

Query: 454 MHASSGQV-DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           ++   G+     ++L + M S GL     T + +++   +  ++D A K L E+K  GY 
Sbjct: 260 VYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYK 319

Query: 513 VD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
              V  + +L V+ K G    AL  L+ M  +    ++    +L  + ++    +    +
Sbjct: 320 PGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAV 379

Query: 572 LETYVESAAKVDLVLYTSVL 591
           ++T        + + YT+V+
Sbjct: 380 IDTMTSKGVMPNAITYTTVI 399


>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 214/480 (44%), Gaps = 36/480 (7%)

Query: 268 IDTQSYNVLMTLFLN---KGLPY-KAFEIYESMEKGECS----LDGSTYELMIPSLAKSG 319
           I TQ+   + T+F N   K L + + F++ E +     S    LD  TY  +I    +  
Sbjct: 189 IKTQNLFPMETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTIITCAKRCN 248

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+K F+ M +    P    +++++D   K G+++  + +Y   +  G +P    + 
Sbjct: 249 LFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIAFA 308

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            L + + +AG  D    +  EM+  G +PN  ++  ++E+  K+GK  +A S+F +M  +
Sbjct: 309 VLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGS 368

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G +P   T + L++++  +     A++L+  M S G       Y  LL++ A   L + A
Sbjct: 369 GVIPDAKTLTALVKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEA 428

Query: 500 AKILLEMKTMGYSVDVSAS--DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
            K+  +MK   +    S S   +L +Y   G+VD A++    M   G++ N      L +
Sbjct: 429 EKLFEDMKKSEHCRPDSWSYTAMLNIYGSGGNVDRAMQLFDEMSELGVQINVMGCTCLSQ 488

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA 617
              +    +    + E  +E   K D  L   +L+ +  C+  ++   ++A L     K 
Sbjct: 489 CLGRARRIDDLVKVFEVSLERGVKPDDRLCGCLLSVVSFCEGAEDANKVLACLQQANPKL 548

Query: 618 HAFLCGLFTGPEQRKQPVLSF--VREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRA 675
            AF+  L        +  +SF  ++E F GI  +    A R F N L++       I R 
Sbjct: 549 VAFVNLL--------EEKISFEALKEEFRGILTDTAVEARRPFCNCLID-------ICRN 593

Query: 676 RCVWKVAYENKLFPKAIVFDQHI------AWSLDVRNLSVGAALIAV---MHTLHRFRKR 726
           R + + A+E             +       W LDVR+LSVGAA  A+   M TL +  +R
Sbjct: 594 RSLHERAHELLYLGTLYGLYPGLHNRTADEWCLDVRSLSVGAAHTALEEWMGTLSKIVQR 653


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 121/594 (20%), Positives = 263/594 (44%), Gaps = 28/594 (4%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           S ++ ++ R+ K    +   DE    +  ++ ++ + +  L  +D+ +  S+KN +++ +
Sbjct: 64  SASAKTIPRYTKWTPQFARVDE----VLKIVQKTGNVEAALESWDKSL--SAKNIVTVLN 117

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             NR  + LA  + L+     ++        I+  +YNV++ +  N      + ++ E M
Sbjct: 118 NINRWEKALAFFEWLKARPELYE--------INRYTYNVMLKILRNGRQLELSEKLVEEM 169

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  T+  +I    +  + + A+K F+ MK     P    + S++D  G+ GR+
Sbjct: 170 TGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRV 229

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + ++++Y +++    +     Y ++   YA+AG   + ++L  EMR +G  PN  +   +
Sbjct: 230 NEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTL 289

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + + +K+GK++ A  +F +M  +G  PTP T S L+EM+   G  D A ++Y ++ + G 
Sbjct: 290 MGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGW 349

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +  ++ Y +L+    +   V+ A  IL EMK  G + D ++    +  Y   G VD A R
Sbjct: 350 KCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARR 409

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA-AKVDLVLYTSVLAHL 594
               + +   + +  +   +  +C      E A  + +  +ES     D  +   +L+ +
Sbjct: 410 MFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLLSCM 469

Query: 595 VRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQR-KQPVLSFVREFFHGIDYELEEG 653
              + +     ++  L       H  +  +    E R +  V   V +F    DY  E  
Sbjct: 470 AMAKSDDERLAILDCLDKFNAPLHELMSAIVRKEEPRSRDEVAEMVEKFIS--DYP-ETD 526

Query: 654 AARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
           + +   N L++    +G  + A  ++ +      +   +  +    W L++R LS+ AA 
Sbjct: 527 SRKPLCNCLIDICSSVGMKHAAHKIFAMGVAVGAY-DGLQTNLPSLWRLNLRTLSMPAAE 585

Query: 714 IAVMHTLHRFRKRMLYYGVVPRRI-------KLVTGPTLKIVIAQMLSSVESPF 760
            A+   +   +  +     +P  +       ++ +G  L  ++  +L  + +PF
Sbjct: 586 CAIEAWVSSLKAAVREGDELPEDLIIETGVGRVRSGQRLNPIVGTLLKKLGAPF 639


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 161/312 (51%), Gaps = 5/312 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D L +++  +  ++L +++    + NG +   + YN ++  L K  +LE +    
Sbjct: 270 YTAIVDWLAKNKKIEEAVALMEKI----TANGCTPTIATYNALLNGLCKMGRLEEAIDLL 325

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +K++D+ C  D  +Y  L+     +   ++A+++++ M     +LD   Y  +I  L ++
Sbjct: 326 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQT 385

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G++  A  +++ M      P     ++++D + KAGR+  +++++  M+  G  P+  +Y
Sbjct: 386 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 445

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +LI    KA K+D AL +  +M+ A   P+   + ++I+   KSG ++ A + F +M  
Sbjct: 446 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLE 505

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
           AG  P   TY+ L+     +G  D+A  +++ M+S+     + TY AL++ L KR+ +  
Sbjct: 506 AGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTK 565

Query: 499 AAKILLEMKTMG 510
           A+     MK  G
Sbjct: 566 ASLYFQHMKERG 577



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 181/372 (48%), Gaps = 3/372 (0%)

Query: 228 SKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
           + NG +   + YN ++  L K  +LE +    +K++D+ C  D  +Y  L+     +   
Sbjct: 13  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRS 72

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
           ++A+++++ M     +LD   Y  +I  L ++G++  A  +++ M      P     +++
Sbjct: 73  FEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTM 132

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +D + KAGR+  +++++  M+  G  P+  +Y +LI    KA K+D AL +  +M+ A  
Sbjct: 133 IDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 192

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM- 465
            P+   + ++I+   KSG ++ A + F +M  AG  P   TY+ L+     +G  D+A  
Sbjct: 193 TPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASH 252

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
            L    T  G    + TYTA++  LAK K ++ A  ++ ++   G +  ++  + L+  +
Sbjct: 253 SLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGL 312

Query: 526 -KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
            K G ++ A+  LR +  +G   +      L +   K      A  L +        +D 
Sbjct: 313 CKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDT 372

Query: 585 VLYTSVLAHLVR 596
           V YT+++  L++
Sbjct: 373 VCYTALIRELLQ 384



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 161/371 (43%), Gaps = 34/371 (9%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-------- 229
           D +L +    K+ ++  P    Y +L D L +S D +   + FDEM+    K        
Sbjct: 178 DCALEMLAQMKK-AFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNI 236

Query: 230 ------------------------NGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264
                                   NG ++    Y  ++ +LAK  K+E +    +K+  +
Sbjct: 237 LISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITAN 296

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
            C     +YN L+      G   +A ++   +    C+ D  TY  +I  L K  R   A
Sbjct: 297 GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 356

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
            KLF+EM  R        + +L+  + + G++  +  VY  M   G  P      ++I+ 
Sbjct: 357 YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 416

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
            +KAG++  A+R++  M   G  PN  +++ +I    K+ K+D A+ +   M++A   P 
Sbjct: 417 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 476

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TY+ L++    SG V++A   ++ M  AG +P + TY  L++   K    D A  +  
Sbjct: 477 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFD 536

Query: 505 EMKTMGYSVDV 515
           +M +   S +V
Sbjct: 537 DMSSSRCSANV 547



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 161/347 (46%), Gaps = 2/347 (0%)

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           K+E +    +K+  + C     +YN L+      G   +A ++   +    C+ D  TY 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I  L K  R   A KLF+EM  R        + +L+  + + G++  +  VY  M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P      ++I+  +KAG++  A+R++  M   G  PN  +++ +I    K+ K+D A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           + +   M++A   P   TY+ L++    SG V++A   ++ M  AG +P + TY  L++ 
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 240

Query: 490 LAKRKLVDVAAKILLEMKTM-GYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRT 547
             K    D A+  L +  T+ G ++D+     ++ ++ K+  ++ A+  +  + ++G   
Sbjct: 241 FCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTP 300

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                  L     K    E A  LL   V++    D+V YTS++  L
Sbjct: 301 TIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGL 347


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 177/369 (47%), Gaps = 9/369 (2%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           S   FRWA     +      Y  +  +L ++R F+ M+++  EM     K G     A+ 
Sbjct: 213 SYRFFRWATASGGFTHTTITYCKMLHILGKTRQFEMMVAIIQEM----GKVGALSMDAFK 268

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
             I+  A A +++ +   F+ +  +      +S+N L+    N+GL  +A ++++ M  G
Sbjct: 269 VAIKSFAAAGEIKNAVGVFELMKKNGFDDGVESFNCLLVALANEGLGREARQVFDKMH-G 327

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
           + S D  +Y  ++ +   +  L  A +++ EM E+  +P   +  ++++ + +  R   +
Sbjct: 328 QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRRPEA 387

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           +K++  M+  G  P+   Y  LI  + K GK+D A+  ++EM+ A  +P+   +T ++  
Sbjct: 388 LKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVG 447

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           +  + ++D   ++  +M + G  P   TY+ L+++  +    D A ++Y  M   GL P 
Sbjct: 448 YGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPT 507

Query: 480 LSTYTALLT--LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           + TY  ++    L  R    +   +  EM   G   DV++  V +  +I+ G  + A ++
Sbjct: 508 IHTYNMMMKSYFLGDRNYA-MGCAVWEEMHRRGICPDVNSYTVFINGHIRHGRPEEAYKY 566

Query: 537 LRFMGSSGI 545
           +  M + G+
Sbjct: 567 IEEMINKGM 575



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/276 (19%), Positives = 112/276 (40%), Gaps = 4/276 (1%)

Query: 188 KRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247
           K    Y P    Y  L      +R+      +++EM+    K  + +   +N +I+ L +
Sbjct: 324 KMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVV---HNTMIEGLLR 380

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
             +   +   F+ +       +  +Y +L+     +G    A E +E M++  C  D +T
Sbjct: 381 GQRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVAT 440

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  ++     + R+D    + +EM ++   P    + +L+  +      D + ++Y +M 
Sbjct: 441 YTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMI 500

Query: 368 GCGHRPSAPMYVSLIESYAKAGK-LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
             G  P+   Y  +++SY    +       +W+EM   G  P+   +T+ I  H + G+ 
Sbjct: 501 KKGLEPTIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTVFINGHIRHGRP 560

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
           + A     +M   G       Y+      + +G+ D
Sbjct: 561 EEAYKYIEEMINKGMTAPQIDYNKFAADFSKAGKPD 596



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 51/297 (17%)

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           I E  + G  S+D   +++ I S A +G +  A+ +F+ MK+  F      F  L+ ++ 
Sbjct: 253 IQEMGKVGALSMD--AFKVAIKSFAAAGEIKNAVGVFELMKKNGFDDGVESFNCLLVALA 310

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
             G    + +V+ +M G  + P    Y +L+ ++  A  L  A R+W+EM   G +P+  
Sbjct: 311 NEGLGREARQVFDKMHG-QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVV 369

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           +   +IE                     G L                 +   A+K++  M
Sbjct: 370 VHNTMIE---------------------GLL--------------RGQRRPEALKMFELM 394

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSV 530
            + G  P + TYT L+    KR  +D+A +   EM+      DV+    L+V Y     +
Sbjct: 395 KAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRM 454

Query: 531 DHALRWLRFMGSSGI----RTNNFIVRQLFESCM--------KNALYESAKPLLETY 575
           D     L  M   G     RT N +++ L    M        K  + +  +P + TY
Sbjct: 455 DRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTY 511



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 4/207 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ML     +    D  +  F+EM     +  ++ ++    ++ Y   A +++      +
Sbjct: 406 YTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCL--LVGY-GNAKRMDRVTAVLE 462

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++    C  D ++YN L+ L  N+ +P  A  IY+ M K        TY +M+ S     
Sbjct: 463 EMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGD 522

Query: 320 RLDA-AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           R  A    +++EM  R   P  N +   ++   + GR + + K   EM   G       Y
Sbjct: 523 RNYAMGCAVWEEMHRRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMTAPQIDY 582

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAG 405
                 ++KAGK D    L  +++ AG
Sbjct: 583 NKFAADFSKAGKPDILYELALKVKFAG 609


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 195/430 (45%), Gaps = 10/430 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE-SRDFDGMLSLFDEMVH 225
           I  A   I   + ++++F    R++   P    Y ++ DV  +  R ++ +L L DEM  
Sbjct: 215 ILHAYSRIGKYERAITMFE-KMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEM-- 271

Query: 226 DSSKNGISL--FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
               NG+    F+  + VI    +   L+ +   F ++        T +YN L+ +F   
Sbjct: 272 --RSNGLEFDEFTC-STVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKA 328

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           G+  +A  I + MEK  C  D  TY  ++ +  ++G  +        M  +   P+   +
Sbjct: 329 GIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITY 388

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +++++ GKAG+ D ++  + +M+  G  P+   Y +++    K  +L+  + +  +MR 
Sbjct: 389 TTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRS 448

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G  PN   +  ++      G       +F +M+  GF P   T++ L+  +   G    
Sbjct: 449 NGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQID 508

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLM 522
            +K+Y  M  AG  P ++TY ALL  LA+R   + A  ++L+MK+ G+   + S S +L 
Sbjct: 509 VVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLN 568

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            Y K G+     +    + +  I  +  ++R L  +  K       +   + + +   K 
Sbjct: 569 CYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKP 628

Query: 583 DLVLYTSVLA 592
           DLVL+ S+L+
Sbjct: 629 DLVLFNSMLS 638



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 146/338 (43%), Gaps = 2/338 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYES 295
           A+  ++   ++  K E +   F+K+  +       +YNV++ ++   G  + K   + + 
Sbjct: 211 AWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDE 270

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M       D  T   +I +  + G LD A K F  +K   +      + SL+   GKAG 
Sbjct: 271 MRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGI 330

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              ++ +  EM+     P    Y  L+ +Y +AG  +      D M   G  PN   +T 
Sbjct: 331 YSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTT 390

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I ++ K+GK D A+S F  M+ +G +P   TY+ +L M     +++  + +   M S G
Sbjct: 391 VINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNG 450

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
             P   T+  +L +   + +     ++  EMK+ G+  +    + L+  Y + GS    +
Sbjct: 451 CAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVV 510

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           +    M  +G          L  +  +   +E+A+ ++
Sbjct: 511 KMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVI 548



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 36/346 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  VI    KA K + +   F+++ +S C  +  +YN ++ +   K    +  ++   M
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDM 446

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C+ +  T+  M+      G      ++F+EMK   F P+ + F +L+ + G+ G  
Sbjct: 447 RSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQ 506

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
              +K+Y EM   G  P    Y +L+ + A+ G  + A  +  +M+  GF+PN   ++++
Sbjct: 507 IDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLM 566

Query: 417 IESHAKSGK----------------------------LDIAMSIFTDMERA-------GF 441
           +  +AK G                              +        MERA       G+
Sbjct: 567 LNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGY 626

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P    ++ +L + A +   D A ++   +  +GL+P L TY +L+ + A+        +
Sbjct: 627 KPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEE 686

Query: 502 ILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
           IL  ++  G   D VS + V+  + + G +  A+R L  M  SGIR
Sbjct: 687 ILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIR 732



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/370 (19%), Positives = 152/370 (41%), Gaps = 37/370 (10%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           KID Q   +++ +   +     A  + + +   E SLD   +  ++ + ++ G+ + AI 
Sbjct: 171 KIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAIT 230

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGR------------------------------- 355
           +F++M++    P+   +  ++D  GK GR                               
Sbjct: 231 MFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISAC 290

Query: 356 -----LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
                LD + K +  ++  G+      Y SL++ + KAG    AL +  EM      P+ 
Sbjct: 291 GREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDL 350

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +  ++ ++ ++G  +        M R G +P   TY+ ++  +  +G+ D A+  +  
Sbjct: 351 VTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQ 410

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGS 529
           M  +G  P + TY A+L +L K+  ++    +L +M++ G + + V+ + +L +    G 
Sbjct: 411 MKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGM 470

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
             +  R  R M S G   N      L  +  +         + E  +++     +  Y +
Sbjct: 471 HKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNA 530

Query: 590 VLAHLVRCQD 599
           +L  L R  D
Sbjct: 531 LLNALARRGD 540



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/357 (18%), Positives = 148/357 (41%), Gaps = 41/357 (11%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +  A       D +LS FR  K +S  VP    Y  +  +L +    + M+    +M+ D
Sbjct: 391 VINAYGKAGKEDKALSFFRQMK-ESGCVPNVCTYNAILGMLGKKSRLEEMI----DMLCD 445

Query: 227 SSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
              NG +  S  +N ++         +     F+++     + +  ++N L+  +   G 
Sbjct: 446 MRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGS 505

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
                ++YE M K   +   +TY  ++ +LA+ G  +AA  +  +MK + F+P+   ++ 
Sbjct: 506 QIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSL 565

Query: 346 LVDSMGKAGR-----------------------------------LDTSMKVYMEMQGCG 370
           +++   K G                                    L    + + E    G
Sbjct: 566 MLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHG 625

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           ++P   ++ S++  +AK    D A  +   +R +G +P+   +  +++ +A+ G+     
Sbjct: 626 YKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGE 685

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            I   ++++G  P   +Y+ +++     G +  A++  + MT +G+RP + TY   +
Sbjct: 686 EILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFV 742



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/313 (18%), Positives = 128/313 (40%), Gaps = 5/313 (1%)

Query: 216 MLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           ++ +++EM+    K G +   + YN ++  LA+    E +      +     K +  SY+
Sbjct: 509 VVKMYEEMI----KAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYS 564

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           +++  +   G      +I E +  G           ++ +  K   L    + FQE  + 
Sbjct: 565 LMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKH 624

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
            ++P   +F S++    K    D + ++   ++  G +P    Y SL++ YA+ G+    
Sbjct: 625 GYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKG 684

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             +   ++ +G +P+   +  +I+   + G +  A+   ++M  +G  P   TY+  +  
Sbjct: 685 EEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAG 744

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           ++  G      ++ + M     RP   TY  ++    K K    A   +  +  M  S D
Sbjct: 745 YSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEMDKSFD 804

Query: 515 VSASDVLMVYIKD 527
             +   L   I++
Sbjct: 805 DQSLRRLTFRIRE 817


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 177/402 (44%), Gaps = 43/402 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L KA K + +     +++D     DT ++N +M      G   +A  +   M
Sbjct: 12  TYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM 71

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C     TY  +I  L K   +D A  L  E     F P    ++ L D + K GR+
Sbjct: 72  AERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRI 131

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++  EM G G  P+   Y +LI+   KA K + A  L + +  +GF P+   +T+I
Sbjct: 132 DEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTII 191

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-- 474
           ++   K G+LD A+ +   M + G  P+  TY+ L+E    +G+VD A  ++  M S   
Sbjct: 192 VDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDC 251

Query: 475 ----------------------------GLR--PGLSTYTALLTLLAKRKLVDVAAKILL 504
                                       G+R  P +  Y AL+    K   +D    +  
Sbjct: 252 TADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFE 311

Query: 505 EMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSG----IRTNNFIVRQLFESC 559
           +M   G   ++   +++M  + K G VD A  +L  M S+G    + + N I+  LF   
Sbjct: 312 DMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLF--- 368

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
            K +  + A+ +L+  +++    D V Y +++A    C++E+
Sbjct: 369 -KASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF--CKEER 407



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 188/449 (41%), Gaps = 44/449 (9%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKAD 249
           S +VP    Y +L D L +    D    L  EM    S NG +     YN +I  L KA 
Sbjct: 109 SGFVPDVVTYSILADGLCKRGRIDEAFELVKEM----SGNGCTPNLVTYNTLIDGLCKAS 164

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           K E +Y   + ++ S    D  +Y +++     +G   KA ++ E M K  C+    TY 
Sbjct: 165 KTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYT 224

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFR-------------------------------- 337
            ++  L ++GR+D A  +F+EM  ++                                  
Sbjct: 225 ALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT 284

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P  +++ +L+D   K GRLD    V+ +M   G  P+   Y  +++   K GK+D A   
Sbjct: 285 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 344

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
            + M  AG  P+   + +II+   K+ K   A  +   M +AG  P   TY+ L+     
Sbjct: 345 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 404

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
             + D A+ +  +M  AG+ P   TY  L++ L++   +  A +++ EM   G  V    
Sbjct: 405 EERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACT 464

Query: 518 S--DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           +   ++    K+G +  AL  +  M   G+  N        +   K    + A  LL   
Sbjct: 465 TYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLS-- 522

Query: 576 VESAAKVDLVLYTSVLAHLVRCQDEQNER 604
            E     D V YT+V+  L  C+ EQ +R
Sbjct: 523 -EMDTLRDEVSYTTVIIGL--CKAEQLDR 548



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 152/376 (40%), Gaps = 41/376 (10%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN+L+          KA E+   M     + D  T+  ++  L K+G+ + A  L 
Sbjct: 9   DVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLL 68

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             M ERN RPS   + +L+  + K   +D +  +  E    G  P    Y  L +   K 
Sbjct: 69  AVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKR 128

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G++D A  L  EM   G  PN   +  +I+   K+ K + A  +   +  +GF+P   TY
Sbjct: 129 GRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTY 188

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + +++     G++D A+K+   M   G  P + TYTAL+  L +   VD A  I  EM +
Sbjct: 189 TIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS 248

Query: 509 MGYSVD--------------------------------VSASDVLM-VYIKDGSVDHALR 535
              + D                                +   + LM  Y K+G +D    
Sbjct: 249 KDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPN 308

Query: 536 WLRFMGSSG----IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               M   G    I+T N ++  L     K+   + A P LE+   +    D+V Y  ++
Sbjct: 309 VFEDMACRGCVPNIKTYNIVMDGL----CKHGKVDEAFPFLESMHSAGCVPDVVSYNIII 364

Query: 592 AHLVRCQDEQNERHLM 607
             L +    +  R ++
Sbjct: 365 DGLFKASKPKEARQVL 380



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 155/413 (37%), Gaps = 72/413 (17%)

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
           G      YN ++    K  +L+     F+ +    C  + ++YN++M      G   +AF
Sbjct: 283 GTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAF 342

Query: 291 EIYESMEKGECSLDGSTYELMIPSL----------------------------------- 315
              ESM    C  D  +Y ++I  L                                   
Sbjct: 343 PFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF 402

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            K  R D A+ + + M +    P    + +L+  + +  RL  + ++  EM   G   SA
Sbjct: 403 CKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSA 462

Query: 376 -PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y ++I+   K G L  AL L D M   G   N   + + I+   K G+LD A S+ +
Sbjct: 463 CTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLS 522

Query: 435 DM----------------------ERA-----------GFLPTPSTYSCLLEMHASSGQV 461
           +M                      +RA           G   T  T++ L++    + ++
Sbjct: 523 EMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRL 582

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           D A+ L   M   G  P + TY  ++T L K   VD A ++  EM   G  V  S S  +
Sbjct: 583 DEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGI-VASSVSYTV 641

Query: 522 MVY--IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           ++Y     G    AL+ L  M SS    ++   R+L+ +       E A  LL
Sbjct: 642 LIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELL 694



 Score = 46.2 bits (108), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 79/185 (42%), Gaps = 7/185 (3%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE 209
           E++T  D++ +   ++ + +A ++    D +  L R              + +L D   +
Sbjct: 523 EMDTLRDEVSYTTVIIGLCKAEQL----DRASKLAREMVAVKGLCITSHTFNLLIDAFTK 578

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
           ++  D  L+L + MV       +     YN VI  L K DK++ ++  F ++        
Sbjct: 579 TKRLDEALTLLELMVQRGCSPSVI---TYNMVITCLCKLDKVDKAWELFDEMAVRGIVAS 635

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           + SY VL+     +G   +A ++ E M   +C +D      +  +L   GR + A +L +
Sbjct: 636 SVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLR 695

Query: 330 EMKER 334
            M  +
Sbjct: 696 RMTTK 700


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 195/430 (45%), Gaps = 10/430 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE-SRDFDGMLSLFDEMVH 225
           I  A   I   + ++++F    R++   P    Y ++ DV  +  R ++ +L L DEM  
Sbjct: 215 ILHAYSRIGKYERAITMFE-KMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEM-- 271

Query: 226 DSSKNGISL--FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
               NG+    F+  + VI    +   L+ +   F ++        T +YN L+ +F   
Sbjct: 272 --RSNGLEFDEFTC-STVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKA 328

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           G+  +A  I + MEK  C  D  TY  ++ +  ++G  +        M  +   P+   +
Sbjct: 329 GIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITY 388

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +++++ GKAG+ D ++  + +M+  G  P+   Y +++    K  +L+  + +  +MR 
Sbjct: 389 TTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRS 448

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G  PN   +  ++      G       +F +M+  GF P   T++ L+  +   G    
Sbjct: 449 NGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQID 508

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLM 522
            +K+Y  M  AG  P ++TY ALL  LA+R   + A  ++L+MK+ G+   + S S +L 
Sbjct: 509 VVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLN 568

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            Y K G+     +    + +  I  +  ++R L  +  K       +   + + +   K 
Sbjct: 569 CYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKP 628

Query: 583 DLVLYTSVLA 592
           DLVL+ S+L+
Sbjct: 629 DLVLFNSMLS 638



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 146/338 (43%), Gaps = 2/338 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYES 295
           A+  ++   ++  K E +   F+K+  +       +YNV++ ++   G  + K   + + 
Sbjct: 211 AWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDE 270

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M       D  T   +I +  + G LD A K F  +K   +      + SL+   GKAG 
Sbjct: 271 MRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGI 330

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              ++ +  EM+     P    Y  L+ +Y +AG  +      D M   G  PN   +T 
Sbjct: 331 YSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTT 390

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I ++ K+GK D A+S F  M+ +G +P   TY+ +L M     +++  + +   M S G
Sbjct: 391 VINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNG 450

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
             P   T+  +L +   + +     ++  EMK+ G+  +    + L+  Y + GS    +
Sbjct: 451 CAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVV 510

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           +    M  +G          L  +  +   +E+A+ ++
Sbjct: 511 KMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVI 548



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 36/346 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  VI    KA K + +   F+++ +S C  +  +YN ++ +   K    +  ++   M
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDM 446

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C+ +  T+  M+      G      ++F+EMK   F P+ + F +L+ + G+ G  
Sbjct: 447 RSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQ 506

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
              +K+Y EM   G  P    Y +L+ + A+ G  + A  +  +M+  GF+PN   ++++
Sbjct: 507 IDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLM 566

Query: 417 IESHAKSGK----------------------------LDIAMSIFTDMERA-------GF 441
           +  +AK G                              +        MERA       G+
Sbjct: 567 LNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGY 626

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P    ++ +L + A +   D A ++   +  +GL+P L TY +L+ + A+        +
Sbjct: 627 KPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEE 686

Query: 502 ILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
           IL  ++  G   D VS + V+  + + G +  A+R L  M  SGIR
Sbjct: 687 ILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIR 732



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/370 (19%), Positives = 152/370 (41%), Gaps = 37/370 (10%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           KID Q   +++ +   +     A  + + +   E SLD   +  ++ + ++ G+ + AI 
Sbjct: 171 KIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAIT 230

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGR------------------------------- 355
           +F++M++    P+   +  ++D  GK GR                               
Sbjct: 231 MFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISAC 290

Query: 356 -----LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
                LD + K +  ++  G+      Y SL++ + KAG    AL +  EM      P+ 
Sbjct: 291 GREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDL 350

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +  ++ ++ ++G  +        M R G +P   TY+ ++  +  +G+ D A+  +  
Sbjct: 351 VTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQ 410

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGS 529
           M  +G  P + TY A+L +L K+  ++    +L +M++ G + + V+ + +L +    G 
Sbjct: 411 MKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGM 470

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
             +  R  R M S G   N      L  +  +         + E  +++     +  Y +
Sbjct: 471 HKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNA 530

Query: 590 VLAHLVRCQD 599
           +L  L R  D
Sbjct: 531 LLNALARRGD 540



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/357 (18%), Positives = 148/357 (41%), Gaps = 41/357 (11%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +  A       D +LS FR  K +S  VP    Y  +  +L +    + M+    +M+ D
Sbjct: 391 VINAYGKAGKEDKALSFFRQMK-ESGCVPNVCTYNAILGMLGKKSRLEEMI----DMLCD 445

Query: 227 SSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
              NG +  S  +N ++         +     F+++     + +  ++N L+  +   G 
Sbjct: 446 MRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGS 505

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
                ++YE M K   +   +TY  ++ +LA+ G  +AA  +  +MK + F+P+   ++ 
Sbjct: 506 QIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSL 565

Query: 346 LVDSMGKAGR-----------------------------------LDTSMKVYMEMQGCG 370
           +++   K G                                    L    + + E    G
Sbjct: 566 MLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHG 625

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           ++P   ++ S++  +AK    D A  +   +R +G +P+   +  +++ +A+ G+     
Sbjct: 626 YKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGE 685

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            I   ++++G  P   +Y+ +++     G +  A++  + MT +G+RP + TY   +
Sbjct: 686 EILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFV 742



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/313 (18%), Positives = 128/313 (40%), Gaps = 5/313 (1%)

Query: 216 MLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           ++ +++EM+    K G +   + YN ++  LA+    E +      +     K +  SY+
Sbjct: 509 VVKMYEEMI----KAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYS 564

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           +++  +   G      +I E +  G           ++ +  K   L    + FQE  + 
Sbjct: 565 LMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKH 624

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
            ++P   +F S++    K    D + ++   ++  G +P    Y SL++ YA+ G+    
Sbjct: 625 GYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKG 684

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             +   ++ +G +P+   +  +I+   + G +  A+   ++M  +G  P   TY+  +  
Sbjct: 685 EEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAG 744

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           ++  G      ++ + M     RP   TY  ++    K K    A   +  +  M  S D
Sbjct: 745 YSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEMDKSFD 804

Query: 515 VSASDVLMVYIKD 527
             +   L   I++
Sbjct: 805 DQSLRRLTFRIRE 817


>gi|356562139|ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 689

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 122/533 (22%), Positives = 235/533 (44%), Gaps = 51/533 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K+  L+     F ++L    + D  S++ +++      LP KA E +E M 
Sbjct: 169 YNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVSFSTIISCARICSLPNKAVEWFEKMP 228

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  D  TY  MI +  ++G +D A++L+   +   +R     F++L+   G AG  D
Sbjct: 229 SFRCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDSVTFSTLIKMYGLAGNYD 288

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + VY EM+  G + +  +Y +L+++  +A +   A  ++ EM   GF PN+  +  ++
Sbjct: 289 GCLNVYQEMKALGVKSNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLL 348

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-TSAGL 476
            ++ +    + A+ ++ +M+  G       Y+ LL M A  G  D A K++  M +SA  
Sbjct: 349 RAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLADDAFKIFEDMKSSATC 408

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
                T+++L+T+ +    V  A ++L EM   G+   +   + ++  Y K G  D  L+
Sbjct: 409 LCDSWTFSSLITIYSCSGNVSEAERMLNEMIESGFQPTIFVLTSLVQCYGKVGRTDDVLK 468

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   GI  ++      F  C+ N + ++ K  L    +   K +  L  SVL +LV
Sbjct: 469 TFNQLLDLGISPDD-----RFCGCLLNVMTQTPKEELGKLNDCVEKANPKL-GSVLRYLV 522

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
              +E +                          E RK+       E F+ I  E++    
Sbjct: 523 EGLEEGD-------------------------GEFRKE-----ASELFNSIADEVK---- 548

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
           + F N L++  V +  +++A  +  +    +++   I       WSL +++LS+GA+L A
Sbjct: 549 KPFCNSLIDLCVNLNLLDKACELLDLGLTLEIYTD-IQSKSQTQWSLHLKSLSLGASLTA 607

Query: 716 VMHTLHRFRKRMLYYGVVPRRIKLVTG--------PTLKIVIAQMLSSVESPF 760
           +   ++   K +     +P  + + TG          L  V+   L+ + +PF
Sbjct: 608 LHAWINDLSKTLESGEDLPPLLGINTGHGKHRYSDKGLANVVESHLNELNAPF 660


>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 193/407 (47%), Gaps = 10/407 (2%)

Query: 167 ITQALKVI-NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           + Q LK   ND   +  +F+WAK Q  Y    E Y  + D+L ++++F  M  L DEM H
Sbjct: 176 VAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMVDILGKAKNFRLMWELVDEMNH 235

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
            +    +   S   +VI+ LA+A + + +   F+ +       DT + NVLM   + +  
Sbjct: 236 LAGSVSLETMS---KVIRRLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEAS 292

Query: 286 PYKAFEIYESMEKGECSL--DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
              A  ++  ++   CS+  + +++ ++I    K+ +LD A K+  E+++    P    +
Sbjct: 293 VEDAHNVFRELK---CSIPFNLASFNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISY 349

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            + +++  +        KV ++M+  G +P+   +  ++ +  KA +++ AL+++++M+ 
Sbjct: 350 TAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVYEKMKK 409

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G  P+   ++ +I    K+G+L     I  DME+ G  P   TY+ L+    +  Q ++
Sbjct: 410 EGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEET 469

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523
           A+ L   M     +P L TY  LL +  ++K + V   +L  M     S++     +L+ 
Sbjct: 470 ALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVR 529

Query: 524 YI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            + ++G +  A  +   M S  +   +   + L E   + ++ E  K
Sbjct: 530 GLCENGKLHLACSFFGEMLSKAMVPKDSTFKMLKEELERKSMLEEMK 576


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 169/371 (45%), Gaps = 5/371 (1%)

Query: 175  NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
            ND   +   F W   Q  Y    + Y ++ D+L + + FD M  L ++MV      G+  
Sbjct: 1423 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVE---VGGLMS 1479

Query: 235  FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
                 +V++ LA A +   +   F K+       DT++ NVL+     +    +A  +++
Sbjct: 1480 LMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQ 1539

Query: 295  SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
             + +G    D +++  ++    K+  L  A+   +EMK+  F PS   + SLV++     
Sbjct: 1540 EL-RGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEK 1598

Query: 355  RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
               T   +  EM+     P+   Y  L+ +  KAG+   AL  +D+++  G  P+   + 
Sbjct: 1599 DFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYN 1658

Query: 415  MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
             +I    ++G+L+ A S+  +M   G  P  +T++ L+       Q ++A+KL   M   
Sbjct: 1659 SLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQ 1718

Query: 475  GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
               P + TYT LL L  KR+ V +   ++  M     S D S   +L+ ++ ++G V  +
Sbjct: 1719 SCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQS 1778

Query: 534  LRWLRFMGSSG 544
              +L  M S G
Sbjct: 1779 CLFLEEMVSKG 1789


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 192/417 (46%), Gaps = 6/417 (1%)

Query: 131 NASAVAKIVEVVNRWKWGPELET-QLDKLQFVPKMVHITQAL-KVINDSDTSLSLFRWAK 188
           N   +  I +V+ +    PEL    LD L F P    ++Q L +  ND   +L  F+WAK
Sbjct: 90  NLDELDAITKVLKKRYPSPELAALALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAK 149

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
            Q+ Y    E   ++ D+L + + FD M  L +EM     + G        +VI+ LAKA
Sbjct: 150 SQTGYRHSPELCNLMVDILGKCKSFDPMSDLVEEMA--KLEQGYVTLETMAKVIRRLAKA 207

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K E +   F+++       DT + NVL+   +       A ++     KG   L   ++
Sbjct: 208 RKHEDAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEF-KGLIPLSSHSF 266

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            +++    ++ + D A K  ++MKE  F P    + S +++           +V  EM+ 
Sbjct: 267 NVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMRE 326

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+A  Y +++    KAG+L  AL ++++M+  G   +  +++ +I    K+G+L  
Sbjct: 327 NGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKD 386

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +F DM + G +    TY+ ++    +  + ++A++L   M     +P + TY  LL 
Sbjct: 387 ACDVFEDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLLK 446

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG 544
           +  K+K + V   +L  M     S D++   +L+    K G V  A  +L  M   G
Sbjct: 447 MCCKKKRMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADAYSFLEEMVLKG 503



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 91/194 (46%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
            +++ ++ C  +  +Y  +M      G   KA E+YE M+   C  D   Y  MI  L K
Sbjct: 321 LEEMRENGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGK 380

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           +GRL  A  +F++M ++        + +++ +     R +T++++  EM+    +P+   
Sbjct: 381 AGRLKDACDVFEDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGT 440

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  L++   K  ++     L D M      P+   +++++ +  K+GK+  A S   +M 
Sbjct: 441 YHPLLKMCCKKKRMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADAYSFLEEMV 500

Query: 438 RAGFLPTPSTYSCL 451
             GF P PST   L
Sbjct: 501 LKGFTPKPSTLKGL 514



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 130/302 (43%), Gaps = 4/302 (1%)

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +E+G  +L+  T   +I  LAK+ + + AI+ F+ M +            L+D++ K   
Sbjct: 187 LEQGYVTLE--TMAKVIRRLAKARKHEDAIEAFRRMDKFGVNKDTAALNVLIDALVKGDS 244

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           ++ + KV +E +G     S    V L+  + +A K D A +  ++M+  GF P+   +T 
Sbjct: 245 VEHAHKVVLEFKGLIPLSSHSFNV-LMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTS 303

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
            IE++           +  +M   G  P   TY+ ++     +GQ+  A+++Y  M   G
Sbjct: 304 FIEAYCHERDFRKVDQVLEEMRENGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDG 363

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
                  Y+ ++ +L K   +  A  +  +M   G   DV   + ++         + AL
Sbjct: 364 CVADTPVYSCMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTYNTMISTACAHSREETAL 423

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           R L+ M     + N      L + C K    +  K LL+   ++    DL  Y+ ++  L
Sbjct: 424 RLLKEMEDGSCKPNVGTYHPLLKMCCKKKRMKVLKFLLDHMFKNDISPDLATYSLLVNAL 483

Query: 595 VR 596
            +
Sbjct: 484 CK 485


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 129/596 (21%), Positives = 247/596 (41%), Gaps = 56/596 (9%)

Query: 237 AYNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           +YN +I   AK +   ++    F ++L      D  +YN L+++  +KG+   A ++   
Sbjct: 250 SYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSE 309

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M++     D  TY   + +L K G++D A ++ +EM  R   P+   +++++D   KA  
Sbjct: 310 MDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANL 369

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           L+ ++ +Y EM+          Y +++  YAK G+ D A+    EM   G + +   +  
Sbjct: 370 LEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNA 429

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           ++  + + G  D    +F +M+     P   TYS +++++   G    AM +Y     A 
Sbjct: 430 LLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQ 489

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS---------VDVSASDVLMVYIK 526
           L   +  YT+++  L K  LV+ +  +L+ M   G           +D S     + Y  
Sbjct: 490 LEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLEYGV 549

Query: 527 DGS---VDHALRWLRFM---GSSGIRTNNFIVRQLFESCMKNALYESAKP---------- 570
            GS   V++    L  M   G+   +T +  + ++FE           K           
Sbjct: 550 HGSSQAVEYPTEQLSSMLIDGAFQNKTGDDRILKMFEQLAAEKAGHREKDRKGRQDQHCI 609

Query: 571 --LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGP 628
             L +   E   K ++V ++++L    RC   ++   L+  L    ++ +    GL  G 
Sbjct: 610 LWLFQKMHELNIKPNVVTFSAILNACSRCNSFEDASMLLGALRLFDNQVYGVTHGLLMG- 668

Query: 629 EQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF 688
              ++ V    +  F  +   ++   A  F N L + L   GQ   A  V        ++
Sbjct: 669 --YREQVWFQAQTLFDEMR-RMDSSTASAFYNALTDMLWQFGQRRGAEMVVTEGRRRNVW 725

Query: 689 PKAIVFDQHIAWS---LDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG--- 742
                      WS   LD+  +S GAA   V   L      +     +P+ + ++TG   
Sbjct: 726 KGE--------WSISCLDLHLMSCGAACAMVHSWLLNMHSTLFEGSELPKIVTILTGWGK 777

Query: 743 -------PTLKIVIAQMLSSVESPFEVSKVVLR---APGDSVMEWFKKPIVQQFLL 788
                   TLK  +  +L+ + SPF +++  L    +PG+ +  W ++P +   L+
Sbjct: 778 HSKVMGDGTLKRAVEALLNGMGSPFRIAEGNLGRYYSPGNLLATWLRQPSIFNLLV 833



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 178/383 (46%), Gaps = 43/383 (11%)

Query: 269 DTQSYNVLMTLFLNKG---LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           + + Y  ++  F N G   L  K F+     + G  +  G     MI +L + G ++ A+
Sbjct: 140 EVEDYIYMLKEFGNTGHFLLATKCFDFIIWKQNGRIA-KGKLVSTMIGTLGRLGEINHAL 198

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +LF+  +      +   F++++ + G+ G    ++ ++  M+  G  P+   Y SLI++ 
Sbjct: 199 RLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAG 258

Query: 386 AKAG-KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           AK     D  ++ +DEM   G  P+   +  ++   A  G  + A  + ++M++ G +  
Sbjct: 259 AKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRD 318

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TY+  L+     GQ+D A ++   M+S  + P + TY+ ++   AK  L++ A  +  
Sbjct: 319 AFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYE 378

Query: 505 EMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR----TNNFI-------- 551
           EMK    SVD VS + ++ +Y K G  D A+   + M S G++    T N +        
Sbjct: 379 EMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYG 438

Query: 552 ----VRQLFE--------------SCM-----KNALYESAKPLLETYVESAAKVDLVLYT 588
               VR+LFE              S M     K  +++ A  + + + ++  +VD+V YT
Sbjct: 439 MYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYT 498

Query: 589 SVLAHLVRCQDEQNERHLMAILS 611
           S++  L  C++   E  +M +++
Sbjct: 499 SIIDSL--CKNGLVESSIMLLIA 519



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 148/322 (45%), Gaps = 2/322 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG-RLDAAIKLFQE 330
           S++ +++ +   G    A +++ SM       +  +Y  +I + AK     D  +K F E
Sbjct: 215 SFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDE 274

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M      P    + SL+      G  +T+ K+  EM   G    A  Y + +++  K G+
Sbjct: 275 MLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQ 334

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +D A R+ +EM      P    ++ +I+  AK+  L+ A++++ +M+         +Y+ 
Sbjct: 335 IDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNT 394

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           ++ ++A  G+ D A+     M S G++  + TY ALL+   +  + D   ++  EMK   
Sbjct: 395 MVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWN 454

Query: 511 -YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            Y   ++ S ++ VY K G    A+   +    + +  +      + +S  KN L ES+ 
Sbjct: 455 IYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGLVESSI 514

Query: 570 PLLETYVESAAKVDLVLYTSVL 591
            LL   +E   K ++V + S++
Sbjct: 515 MLLIAMIEKGIKPNVVTFNSII 536



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 3/228 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y    D L +    D    + +EM   SS+        Y+ +I   AKA+ LE +   ++
Sbjct: 322 YNTYLDTLCKGGQIDLARRVLEEM---SSRRVWPTVVTYSTMIDGCAKANLLEDALNLYE 378

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++      +D  SYN ++ ++   G   +A    + ME      D  TY  ++    + G
Sbjct: 379 EMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYG 438

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D   +LF+EMK  N  P+   +++++D   K G    +M VY + +          Y 
Sbjct: 439 MYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYT 498

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
           S+I+S  K G +++++ L   M   G +PN   F  II++  +S  L+
Sbjct: 499 SIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLE 546



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 119/269 (44%), Gaps = 12/269 (4%)

Query: 215 GMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           GM     +++ +  + GI   +  YN  +  L K  +++++    +++          +Y
Sbjct: 298 GMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTY 357

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + ++       L   A  +YE M+    S+D  +Y  M+   AK GR D AI   +EM+ 
Sbjct: 358 STMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMES 417

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
              +     + +L+   G+ G  D   +++ EM+     P+   Y ++I+ Y K G    
Sbjct: 418 CGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQE 477

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A+ ++ + + A    +   +T II+S  K+G ++ ++ +   M   G  P   T++ +++
Sbjct: 478 AMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSIID 537

Query: 454 -----------MHASSGQVDSAMKLYNSM 471
                      +H SS  V+   +  +SM
Sbjct: 538 ASRQSPTLEYGVHGSSQAVEYPTEQLSSM 566


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 145/326 (44%), Gaps = 36/326 (11%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T+ +MI  L K G L  A  L   MK     P    + SL+D  GK G L+   K+  EM
Sbjct: 196 TFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEM 255

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +GCG RP    Y +L+  + K G+++ A   + EM+  G   N   F+  +++  K+G +
Sbjct: 256 RGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMV 315

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             AM +F  M   G  P   TY+CL++    +G++D A+ L N M   G+   + TYT L
Sbjct: 316 REAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVL 375

Query: 487 LTLLAKRKLV----DV-------------------------------AAKILLEMKTMGY 511
           +  L K   V    DV                               A  +L EMK  G 
Sbjct: 376 VDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGM 435

Query: 512 SVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
            +DVS    L+  + +   +D A   L  M   G++ NN I   + ++C K      A  
Sbjct: 436 ELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIA 495

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           LL+  ++S  + ++V Y +++  L +
Sbjct: 496 LLQKMMDSGFRPNIVTYCALVDGLCK 521



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 162/387 (41%), Gaps = 36/387 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    K  +LE       ++    C+ D  +YN L+  F   G   +A+  +  M+
Sbjct: 232 YNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMK 291

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     +  T+   + +  K+G +  A+KLF +M+ +  +P+   +  LVD   KAGRLD
Sbjct: 292 REGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLD 351

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  EM   G   +   Y  L++   K GK+  A  ++  M  AG R N  L+T +I
Sbjct: 352 DALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLI 411

Query: 418 ESH-----------------------------------AKSGKLDIAMSIFTDMERAGFL 442
             H                                       KLD A S+   M+  G  
Sbjct: 412 HGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLK 471

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P    Y+ +++    + +   A+ L   M  +G RP + TY AL+  L K   +D A   
Sbjct: 472 PNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISH 531

Query: 503 LLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             +M  +G   +V A   L+  + K+G +D A+  L  M   G+  +N +   L +  +K
Sbjct: 532 FNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLK 591

Query: 562 NALYESAKPLLETYVESAAKVDLVLYT 588
               + A  L    + S  ++DL  YT
Sbjct: 592 QGNLQDAFALKAKMINSGLQLDLYGYT 618



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 147/335 (43%), Gaps = 5/335 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAK 247
           R     P +  Y  L D   ++   D  L L +EMV    + G+ L    Y  ++  L K
Sbjct: 326 RMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMV----QQGVPLNVVTYTVLVDGLCK 381

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
             K+  +   F+ +  +  + +   Y  L+          +A  +   M+     LD S 
Sbjct: 382 EGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSL 441

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  +I  L    +LD A  L  +M E   +P+  I+ +++D+  KA +   ++ +  +M 
Sbjct: 442 YGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMM 501

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G RP+   Y +L++   KAG +D A+  +++M   G  PN   +T +++   K+G+LD
Sbjct: 502 DSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLD 561

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+ +  +M   G        + L++ H   G +  A  L   M ++GL+  L  YT  +
Sbjct: 562 KAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFV 621

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
                  ++  A ++L EM   G + D    + L+
Sbjct: 622 WGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLI 656



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 118/258 (45%), Gaps = 4/258 (1%)

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL--DGSTYELMIPSLAKSGR 320
           D   ++D   Y  L+    N     +A  +   M+  EC L  +   Y  ++ +  K+ +
Sbjct: 432 DKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMD--ECGLKPNNVIYTNIMDACFKARK 489

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
              AI L Q+M +  FRP+   + +LVD + KAG +D ++  + +M   G  P+   Y +
Sbjct: 490 ESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTA 549

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++   K G+LD A+ L DEM   G   +  + T +++ H K G L  A ++   M  +G
Sbjct: 550 LVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSG 609

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
                  Y+C +    +   +  A ++ + M   G+ P    Y  L+    K   ++ AA
Sbjct: 610 LQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAA 669

Query: 501 KILLEMKTMGYSVDVSAS 518
            +  EM+++    +  A+
Sbjct: 670 ILQNEMESLLSCTNADAA 687



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 80/200 (40%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++    KA K   +    +K++DS  + +  +Y  L+      G   +A   +  M 
Sbjct: 477 YTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMV 536

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +   Y  ++  L K+GRLD A+ L  EM ++       +  SL+D   K G L 
Sbjct: 537 DLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQ 596

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  +  +M   G +     Y   +  +     +  A  +  EM   G  P+  ++  +I
Sbjct: 597 DAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLI 656

Query: 418 ESHAKSGKLDIAMSIFTDME 437
               K G ++ A  +  +ME
Sbjct: 657 NKCQKLGNMEEAAILQNEME 676


>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 706

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 139/608 (22%), Positives = 250/608 (41%), Gaps = 95/608 (15%)

Query: 170 ALKVINDSDTSLSL---FRWAKRQSWYVPGDEC--YVMLFDVLNESRDFDGMLSLFDEMV 224
           A+ +IN+ + S+ +    ++ +R+S  +P  E   Y +   V  + +D DG   +F EM+
Sbjct: 151 AVIIINNMENSVVVPFVLQYVQRKS--IPTREVILYNVTLKVFRKCKDLDGAEKVFGEML 208

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
               K     FS      +     DK   +   F+K+    C+ D  +Y+V++  +   G
Sbjct: 209 QRGVKPDNVTFSTIISCARSCYLPDK---AVEWFEKMPLFGCEPDDVTYSVMIDSYGKAG 265

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
               A  +Y+     +  ++ +T+  +I     +G  D  + +++EMK    +P+  ++ 
Sbjct: 266 DIDMALNLYDRARTEKWRIEPATFSTLIKMYGVAGNYDGCLNVYEEMKALGVKPNLVVYN 325

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +L+D+MG+A R   +  +Y EM      P+   Y SL+ +Y +A   + AL ++ EMR  
Sbjct: 326 TLLDAMGRAKRPWQARTIYKEMINNDILPNRATYASLLHAYGRARFCEDALVVYREMREK 385

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PTPSTYSCLLEMHASSGQVDS 463
               N  L+  ++   A  G  D+A  IF DM+ +    P   T+S L+ +++ SG+V  
Sbjct: 386 EMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSGRVSE 445

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523
           A ++ N M  +G  P +   T+L+    K K  D   K   ++  MG   D         
Sbjct: 446 AERMMNEMIESGFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLLDMGIEPDD-------- 497

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
                         RF G                 C+ N + ++ K  L   ++   K +
Sbjct: 498 --------------RFCG-----------------CLLNVMTQTPKEELGKLIDCVEKAN 526

Query: 584 LVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFF 643
             L + V+ +LV                           GL    E RK+ +     E F
Sbjct: 527 PKL-SFVVRYLVE--------------------------GLEGDGEFRKEAL-----ELF 554

Query: 644 HGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLD 703
             I     +G  R F N L++  + +  ++RAR +  +    +++   I       WSL 
Sbjct: 555 SSI----TDGVKRAFCNSLIDLCINLDLLDRARVLLDLGLTLEIYTD-IQSRSQTQWSLI 609

Query: 704 VRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG--------PTLKIVIAQMLSS 755
           +R LSVGA+L A    ++   K       +P  + + TG          L  VI   +  
Sbjct: 610 LRGLSVGASLTAFHVWINDLSKAFESGEDLPPLLGIHTGHGKHRYSDKGLAGVIESHMKE 669

Query: 756 VESPFEVS 763
           +++PF  S
Sbjct: 670 LDAPFRES 677


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 203/459 (44%), Gaps = 54/459 (11%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y  L D L ++   D  +++ ++MV    K        Y  VI  L+KA ++E 
Sbjct: 74  LPTTVTYTALVDGLLKAGRLDEAMAVLEQMVE---KGNSPTLKTYTVVIDGLSKAGRVEE 130

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK----GECSLDGSTYE 309
           +   F  +L + C+ D   Y  L+      G P +A+ +Y+             D  TY 
Sbjct: 131 ARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYT 190

Query: 310 LMIPSLAKSGRLDAAIKLFQ-EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            +I  L K+GR+  A ++F  E  ER F P    + S++D + K GR++   + + EM+ 
Sbjct: 191 SLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRN 250

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G+ P A  Y +LI+ + KA  +  A R++ +M  +G   +   + +I++   K+G++  
Sbjct: 251 RGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAE 310

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL- 487
           A + F  ME  G + T  TYS L++   S G V +A++L+  M   G  P L +Y  ++ 
Sbjct: 311 AYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIR 370

Query: 488 ----------------TLLAKRKLVDV-------------------AAKILLEMKTMGYS 512
                            LL +R   DV                     ++   M + G S
Sbjct: 371 GLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTS 430

Query: 513 VDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTN----NFIVRQLFESCMKNALYES 567
            ++ +  +LM  I + G ++ AL   R M S G+  +    N ++R L   C+   + E+
Sbjct: 431 PNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWL---CIAGRVDEA 487

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            +   E  +E  +  D   Y S+L  L RC+  +  R L
Sbjct: 488 LEVFRE--LERRSAPDAWSYWSLLDGLSRCERMEEARLL 524



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 167/367 (45%), Gaps = 15/367 (4%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           + ++ + L   +  D   S+ +  V    +     +  YN  I  L KA++++ ++   K
Sbjct: 10  FTVVINGLCREKRLDEAFSVLERAVRAGCEPD---YVTYNVFIDGLCKAERVDDAFQLLK 66

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKS 318
           K+ +  C   T +Y  L+   L  G   +A  + E M EKG  S    TY ++I  L+K+
Sbjct: 67  KMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGN-SPTLKTYTVVIDGLSKA 125

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR----PS 374
           GR++ A ++F +M     RP   ++ +L+  + K+G+ + +  +Y E     H     P 
Sbjct: 126 GRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPD 185

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
              Y SLI+   KAG++  A +++D+  +  GF P+   +T II+   K G+++     F
Sbjct: 186 VVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERF 245

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +M   G+ P   TY+ L++    +  +  A ++Y  M  +G      TY  +L  L K 
Sbjct: 246 HEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKA 305

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTN---- 548
             V  A    L M+  G    V     LM  +  +G+V  A+   R M   G   N    
Sbjct: 306 GRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSY 365

Query: 549 NFIVRQL 555
           N I+R L
Sbjct: 366 NIIIRGL 372



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 159/332 (47%), Gaps = 6/332 (1%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C  D  ++ V++     +    +AF + E   +  C  D  TY + I  L K+ R+D A 
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +L ++M E+   P+   + +LVD + KAGRLD +M V  +M   G+ P+   Y  +I+  
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM----ERAGF 441
           +KAG+++ A R++ +M   G RP+  ++T +I+   KSGK + A +++ +       A  
Sbjct: 123 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATA 182

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLY-NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           +P   TY+ L++    +G++  A +++ +     G  P   TYT+++  L K   V+   
Sbjct: 183 VPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGC 242

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           +   EM+  GY  D V+ + ++  ++K   +  A R  R M  SG   +      + +  
Sbjct: 243 ERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGL 302

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            K      A        E      +V Y++++
Sbjct: 303 CKAGRVAEAYATFLAMEERGCVATVVTYSALM 334



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 82/213 (38%), Gaps = 36/213 (16%)

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+   FT++I    +  +LD A S+     RAG  P   TY+  ++    + +VD A +L
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-K 526
              M      P   TYTAL+  L K   +D A  +L +M   G S  +    V++  + K
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
            G V+ A R    M  +G R + F+                                   
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDAFV----------------------------------- 149

Query: 587 YTSVLAHLVRCQDEQNERHLMAILSATKHKAHA 619
           YT+++  L +    +    L    +A KH A A
Sbjct: 150 YTALIKGLCKSGKPEEAYALYKEANARKHHATA 182


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 170/378 (44%), Gaps = 42/378 (11%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YNVL+          +A E+  S+     + D  TY  ++    +  + +A I+L  EM
Sbjct: 262 TYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEM 321

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            E  F P+    + LVD + K G++D + ++ +++   G  P+  +Y +LI S  K G L
Sbjct: 322 VELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDL 381

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM--------------------- 430
           D A  L+  M +   RPN   ++++I+S  +SG+LD+A+                     
Sbjct: 382 DKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSL 441

Query: 431 --------------SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
                         S+F +M   G  PT +T++ L+  +    QV  A KLYN M   G+
Sbjct: 442 INGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGI 501

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALR 535
            P + T+TAL++ L     +  A+++  E+        +V+ + ++  Y +DG +D A  
Sbjct: 502 TPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFE 561

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L  M   G+  + +  R L            AK  ++   +   K++ + Y+++L    
Sbjct: 562 LLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGY- 620

Query: 596 RCQDEQNERHLMAILSAT 613
            CQ    E  LM  LSA+
Sbjct: 621 -CQ----EGRLMEALSAS 633



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 173/383 (45%), Gaps = 6/383 (1%)

Query: 211 RDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
           + F+  + L DEMV    + G S   +A + ++  L K  K++ +Y    KV       +
Sbjct: 309 QQFEAGIQLMDEMV----ELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPN 364

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
              YN L+      G   KA  +Y +M       +G TY ++I S  +SGRLD AI  F 
Sbjct: 365 LFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFD 424

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
            M +     +   + SL++   K G L  +  +++EM   G  P+A  + SLI  Y K  
Sbjct: 425 RMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDL 484

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++  A +L+++M   G  PN   FT +I     + K+  A  +F ++      PT  TY+
Sbjct: 485 QVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYN 544

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+E +   G++D A +L   M   GL P   TY  L++ L     V  A   + ++   
Sbjct: 545 VLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQ 604

Query: 510 GYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
              + ++  S +L  Y ++G +  AL     M   GI  +      L +  +K    ++ 
Sbjct: 605 NVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTF 664

Query: 569 KPLLETYVESAAKVDLVLYTSVL 591
             LL+   +   + D V+YTS++
Sbjct: 665 FDLLKDMHDQGLRPDNVIYTSMI 687



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 148/351 (42%), Gaps = 5/351 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           LFDE+V    K        YN +I+   +  K++ ++   + +       DT +Y  L++
Sbjct: 527 LFDELVERKIK---PTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLIS 583

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
              + G   KA +  + + K    L+   Y  ++    + GRL  A+    EM +R    
Sbjct: 584 GLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINM 643

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
                A L+D   K     T   +  +M   G RP   +Y S+I++Y+K G    A   W
Sbjct: 644 DLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECW 703

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           D M      PN   +T ++    K+G++D A  +F  M+ A   P   TY C L+     
Sbjct: 704 DLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKE 763

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSA 517
           G +  A+ L+++M   GL     T+  ++    K      A K+L EM   G   D V+ 
Sbjct: 764 GNMKEAIGLHHAMLK-GLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTY 822

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           S ++  Y + G+V  +++    M + G+  +      L   C  N   + A
Sbjct: 823 STLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKA 873



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 132/311 (42%), Gaps = 3/311 (0%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A E    ME     L   TY ++I  L K  R+  A+++ + +  +        + +LV
Sbjct: 243 RAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLV 302

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
               +  + +  +++  EM   G  P+      L++   K GK+D A  L  ++   GF 
Sbjct: 303 LGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFV 362

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           PN  ++  +I S  K G LD A  ++++M      P   TYS L++    SG++D A+  
Sbjct: 363 PNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISY 422

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIK 526
           ++ M   G+   +  Y +L+    K   +  A  + +EM   G     +  + ++  Y K
Sbjct: 423 FDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCK 482

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLV 585
           D  V  A +    M  +GI  N +    L    C  N + E A  L +  VE   K   V
Sbjct: 483 DLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAE-ASELFDELVERKIKPTEV 541

Query: 586 LYTSVLAHLVR 596
            Y  ++    R
Sbjct: 542 TYNVLIEGYCR 552



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/441 (20%), Positives = 173/441 (39%), Gaps = 46/441 (10%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L D    S   D  +S FD M+ D     +    AYN +I    K   L  +
Sbjct: 398 PNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVY---AYNSLINGQCKFGDLSAA 454

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F ++ +   +    ++  L++ +       KAF++Y  M     + +  T+  +I  
Sbjct: 455 ESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISG 514

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L  + ++  A +LF E+ ER  +P+   +  L++   + G++D + ++  +M   G  P 
Sbjct: 515 LCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPD 574

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS--- 431
              Y  LI      G++  A    D++     + N   ++ ++  + + G+L  A+S   
Sbjct: 575 TYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASC 634

Query: 432 --------------------------------IFTDMERAGFLPTPSTYSCLLEMHASSG 459
                                           +  DM   G  P    Y+ +++ ++  G
Sbjct: 635 EMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEG 694

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSAS 518
               A + ++ M +    P + TYTAL+  L K   +D A  +   M+      + ++  
Sbjct: 695 SFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYG 754

Query: 519 DVLMVYIKDGSVDHALRWLRFMGS---SGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
             L    K+G++  A+     M     +   T+N I+R     C     +E+ K L E  
Sbjct: 755 CFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGF---CKLGRFHEATKVLSEM- 810

Query: 576 VESAAKVDLVLYTSVLAHLVR 596
            E+    D V Y++++    R
Sbjct: 811 TENGIFPDCVTYSTLIYEYCR 831



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 34/220 (15%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
            K + D   + D   Y  ++  +  +G   KAFE ++ M   EC  +  TY  ++  L K
Sbjct: 668 LKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCK 727

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG----------------------- 354
           +G +D A  LF+ M+  N  P+   +   +D++ K G                       
Sbjct: 728 AGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTH 787

Query: 355 -----------RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
                      R   + KV  EM   G  P    Y +LI  Y ++G +  +++LWD M  
Sbjct: 788 NIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLN 847

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            G  P+   + ++I     +G+LD A  +  DM R G +P
Sbjct: 848 RGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIP 887



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 4/215 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y  + D  ++   F      +D MV +     +  ++A   ++  L KA +++ +
Sbjct: 678 PDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTA---LMNGLCKAGEMDRA 734

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              FK++  ++   ++ +Y   +     +G   +A  ++ +M KG  + +  T+ ++I  
Sbjct: 735 GLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLA-NTVTHNIIIRG 793

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K GR   A K+  EM E    P    +++L+    ++G +  S+K++  M   G  P 
Sbjct: 794 FCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPD 853

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
              Y  LI      G+LD A  L D+M   G  P+
Sbjct: 854 LVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 183/397 (46%), Gaps = 41/397 (10%)

Query: 172 KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           ++ N    +LS F+WA++Q  ++   E Y  L D L + + F+ + +L    V+D  + G
Sbjct: 122 RLSNAGALALSFFKWAEKQKGFMYNTESYNALIDSLGKIKQFNMIWNL----VNDMKRKG 177

Query: 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291
           +     +  + +  A++ K++ +   F+K+     KI++  +N L+   +       A  
Sbjct: 178 VLTKETFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQN 237

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE------------------ 333
           +++ M+      D  +Y +++    +   L    ++++EMK+                  
Sbjct: 238 VFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYC 297

Query: 334 -----------------RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
                            +N +PS +IF +L++ +G   RL  +++ +   +  G  P  P
Sbjct: 298 KVRKYDDAIELFREMESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETP 357

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +++ +Y  + ++D A R+ DEMR +G  PN   + +I+    K+ K   A S+F  M
Sbjct: 358 TYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKM 417

Query: 437 -ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
                  PT STY  ++ M  +  +V+SA+K+++ M + G+ PG+  ++ L+  L     
Sbjct: 418 SSEEECEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENK 477

Query: 496 VDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVD 531
           +D+A K   EM  +G     +  S +    I+DG  D
Sbjct: 478 LDIACKYFQEMLDVGIRPPAALFSHLKQALIEDGRKD 514



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 126/289 (43%), Gaps = 8/289 (2%)

Query: 159 QFVPKMVHITQALKVINDSDTSLSL---FRWAKRQSWYVPGDECYVMLFDVLNESRDFDG 215
           +FVP +   T  L+        L L   +R  K +  + P    Y +L +   + R +D 
Sbjct: 246 RFVPDIKSYTILLEGWGQEKNLLKLDEVYREMKDEG-FEPDVVTYGILINAYCKVRKYDD 304

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
            + LF EM    SKN       +  +I  L    +L  +   F++   S    +T +YN 
Sbjct: 305 AIELFREM---ESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNA 361

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK-ER 334
           ++  +        A+ + + M K     +  TY++++  L K+ +   A  +F++M  E 
Sbjct: 362 VVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEE 421

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
              P+ + +  +V       ++++++KV+  M+  G  P   M+  LI S     KLD A
Sbjct: 422 ECEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIA 481

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            + + EM   G RP   LF+ + ++  + G+ D  + +   +++    P
Sbjct: 482 CKYFQEMLDVGIRPPAALFSHLKQALIEDGRKDTVVLLAQKIDKLRKTP 530


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 181/393 (46%), Gaps = 5/393 (1%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++L  + +E+R  + +  L  +M+ D   +      +Y  VI    K   L+ +Y  + +
Sbjct: 167 ILLKGLCDENRSQEALELL--QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +LD     +  +Y+ ++          KA E+  SM K     +  TY  ++     SG+
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
              AI   ++M      P    + SL+D + K GR   + K++  M   G +P    Y +
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++ YA  G L     L D M   G  PN  +F+++I ++AK GK+D AM +F+ M + G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY  ++ +   SG+V+ AM+ +  M    L PG   Y +L+  L      D A 
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES- 558
           +++LEM   G  +D +  + ++  + K+G V  + +    M   G++ +      L +  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           C+   + E+ K LL + V    K D V Y +++
Sbjct: 525 CLAGKMDEATK-LLASMVSVGMKPDCVTYNTLI 556



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 173/378 (45%), Gaps = 3/378 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++ YL K  +   +   F  +     K +  +Y  L+  +  KG   +   + + M
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     +   + ++I + AK G++D A+ +F +M+++   P    + +++  + K+GR+
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +M+ + +M      P   +Y SLI S     K D A  L  EM   G   +   F  I
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+SH K G++  +  +F  M R G  P   TYS L++ +  +G++D A KL  SM S G+
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
           +P   TY  L+    K   ++ A  +  EM++ G S D+   ++++  +       A + 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 537 LRFMG--SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           L ++G   SG +        +     KN L + A  + +    +  +++   +  ++  L
Sbjct: 606 L-YVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 595 VRCQDEQNERHLMAILSA 612
           ++       + L A LSA
Sbjct: 665 LKVGRNDEAKDLFAALSA 682



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 146/327 (44%), Gaps = 7/327 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYES 295
            Y  VI  L K+ ++E +   F++++D         YN L+          KA E I E 
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +++G C LD   +  +I S  K GR+  + KLF  M     +P    +++L+D    AG+
Sbjct: 471 LDRGIC-LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D + K+   M   G +P    Y +LI  Y K  +++ AL L+ EM  +G  P+   + +
Sbjct: 530 MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I++   ++ +   A  ++  +  +G     STY+ +L     +   D A++++ ++    
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHAL 534
           L+    T+  ++  L K    D A  +   +   G   DV    ++    I+ G ++   
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 709

Query: 535 RWLRFMGSSGIRTN----NFIVRQLFE 557
                M  +G   N    N IVR+L +
Sbjct: 710 DLFLSMEENGCTANSRMLNSIVRKLLQ 736



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 133/353 (37%), Gaps = 42/353 (11%)

Query: 286 PYKAFEIYESMEKG---ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +    E + +  TY ++I S   +GRLD        + ++ FR     
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIA 128

Query: 343 FASLVDSMGKAGRLDTSMKVY---MEMQGC------------------------------ 369
           F  L+  +    R   +M +    M   GC                              
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188

Query: 370 -----GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
                   P    Y ++I  + K G LD A   + EM   G  PN   ++ II +  K+ 
Sbjct: 189 PDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQ 248

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
            +D AM + T M + G +P   TY+ ++  + SSGQ   A+     M S G+ P + TY 
Sbjct: 249 AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSS 543
           +L+  L K      A K+   M   G   +++    +L  Y   G++      L  M  +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           GI  N+++   L  +  K    + A  +     +     D V Y +V+  L +
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 75/375 (20%), Positives = 144/375 (38%), Gaps = 38/375 (10%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    Y  +  +L +S   +  +  F++M+ +    G  +   YN +I  L   
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV---YNSLIHSLCIF 457

Query: 249 DK-----------LEMSYCC----FKKVLDSDCK--------------------IDTQSY 273
           DK           L+   C     F  ++DS CK                     D  +Y
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 517

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + L+  +   G   +A ++  SM       D  TY  +I    K  R++ A+ LF+EM+ 
Sbjct: 518 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES 577

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    +  ++  + +  R   + ++Y+ +   G +     Y  ++    K    D 
Sbjct: 578 SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDE 637

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           ALR++  + +   +     F ++I +  K G+ D A  +F  +   G +P   TYS + E
Sbjct: 638 ALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G ++    L+ SM   G         +++  L +R  +  A   L  +    +S+
Sbjct: 698 NLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSL 757

Query: 514 DVSASDVLMVYIKDG 528
           + S + + +  +  G
Sbjct: 758 EASTASLFLDLLSGG 772


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/473 (22%), Positives = 207/473 (43%), Gaps = 39/473 (8%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++N ++  L K  K++ +   F+ V+  D + ++ +YN+++ +    G   +A+ I + M
Sbjct: 90  SFNSILTCLGKKRKVDEALSLFE-VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEM 148

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      +  T  +M+  L K+ +L+ A K+F+   +R   P    + SL+D +GK G++
Sbjct: 149 EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV 208

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + +++ +M   GH  +  +Y SLI ++   G+ +   +++ E+   G +P+  L    
Sbjct: 209 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTY 268

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K+G+++    IF D+   GFLP   +YS L+     +GQ      ++++M   G 
Sbjct: 269 MDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGF 328

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
                 Y A++    K   V  A +IL EMK       V+    ++  + K   +D A  
Sbjct: 329 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 388

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
                 S GI  N  +   L +   K    + A  +LE  ++     ++  + S+L  LV
Sbjct: 389 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 448

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
           + + E NE               A +C  F   ++ K P                     
Sbjct: 449 KAE-EINE---------------ALVC--FQSMKEMKCP-------------------PN 471

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLS 708
            Y  ++L+N L  + + N+A   W+   +  L P  + +   I+    V N++
Sbjct: 472 TYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNIT 524



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 193/411 (46%), Gaps = 5/411 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+   +P    +  +   L + R  D  LSLF+ M  D+  N     S YN +I  L   
Sbjct: 80  RERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNS----STYNIIIDMLCLG 135

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            ++E +Y    ++  +    +  + N+++          +A++I+ES  +  C+ D  TY
Sbjct: 136 GRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTY 195

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I  L K G++D A +LF++M +     +  ++ SL+ +    GR +   K++ E+  
Sbjct: 196 CSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIR 255

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G +P   +  + ++   KAG+++    +++++R  GF P+   ++++I    K+G+   
Sbjct: 256 RGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARE 315

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             +IF  M++ GF      Y+ +++    SG+V  A ++   M    ++P ++TY A++ 
Sbjct: 316 TSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVD 375

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
            LAK   +D A  +  E K+ G  ++V   S ++  + K G +D A   L  M   G+  
Sbjct: 376 GLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTP 435

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
           N +    L ++ +K      A    ++  E     +   Y+ ++  L R Q
Sbjct: 436 NVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQ 486



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 150/313 (47%), Gaps = 4/313 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            R  DG   +F E++    K  ++L + Y   +  + KA ++E     F+ +       D
Sbjct: 241 GRKEDGH-KIFKELIRRGCKPDLTLLNTY---MDCVFKAGEVEKGRMIFEDIRSYGFLPD 296

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            +SY++L+      G   +   I+ +M++   +LD   Y  ++    KSG++  A ++ +
Sbjct: 297 VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 356

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EMKE+  +P+   + ++VD + K  RLD +  ++ E +  G   +  +Y SLI+ + K G
Sbjct: 357 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 416

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++D A  + +EM   G  PN   +  ++++  K+ +++ A+  F  M+     P   TYS
Sbjct: 417 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 476

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+       + + A   +  M   GL P + TYT +++ LAK   +  A  +    K  
Sbjct: 477 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 536

Query: 510 GYSVDVSASDVLM 522
           G   D ++ + L+
Sbjct: 537 GGIPDAASFNALI 549



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 157/348 (45%), Gaps = 5/348 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D L +    D    LF++M+ D+  N   +   Y  +I+      + E  +  FK
Sbjct: 195 YCSLIDGLGKKGQVDEAYRLFEKML-DAGHNANPV--VYTSLIRNFFIHGRKEDGHKIFK 251

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++   CK D    N  M      G   K   I+E +       D  +Y ++I  L K+G
Sbjct: 252 ELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAG 311

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +      +F  MK++ F      + ++VD   K+G++  + ++  EM+    +P+   Y 
Sbjct: 312 QARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYG 371

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           ++++  AK  +LD A  L++E +  G   N  L++ +I+   K G++D A  I  +M + 
Sbjct: 372 AIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 431

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   T++ LL+    + +++ A+  + SM      P   TY+ L+  L + +  + A
Sbjct: 432 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKA 491

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL-RFMGSSGI 545
                +M+  G   +V     ++  + K G++  A     RF  + GI
Sbjct: 492 FVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI 539



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 151/340 (44%), Gaps = 22/340 (6%)

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A K F E+K +  +P    + S++  + KAGRL  + +++ +M+     P A  Y ++I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            Y  AG+ + A +L + +R  G  P+   F  I+    K  K+D A+S+F  M++    P
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EP 120

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
             STY+ +++M    G+V+ A ++ + M  A L P L T   ++  L K + ++ A KI 
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 504 LEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
                 G + D V+   ++    K G VD A R    M  +G   N  +   L  +   +
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 240

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLC 622
              E    + +  +    K DL L  + +  + +  + +  R +   +     +++ FL 
Sbjct: 241 GRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI-----RSYGFL- 294

Query: 623 GLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVL 662
                P+ R   +L       HG+    + G AR   N+ 
Sbjct: 295 -----PDVRSYSIL------IHGL---TKAGQARETSNIF 320



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 125/282 (44%), Gaps = 2/282 (0%)

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
           M++  F ++     K D  SY  ++ +    G   +A E++  ME          Y  MI
Sbjct: 1   MAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMI 60

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
                +GR + A KL + ++ER   PS   F S++  +GK  ++D ++ ++  M+     
Sbjct: 61  MGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAE 119

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P++  Y  +I+     G+++ A R+ DEM  A   PN     ++++   K+ KL+ A  I
Sbjct: 120 PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKI 179

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F    + G  P   TY  L++     GQVD A +L+  M  AG       YT+L+     
Sbjct: 180 FESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI 239

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
               +   KI  E+   G   D++  +  M    K G V+  
Sbjct: 240 HGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKG 281



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 129/289 (44%), Gaps = 14/289 (4%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAK 247
           R   ++P    Y +L   L ++    G       + H   + G +L + AYN V+    K
Sbjct: 289 RSYGFLPDVRSYSILIHGLTKA----GQARETSNIFHAMKQQGFALDARAYNAVVDGFCK 344

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
           + K+  +Y   +++ +   +    +Y  ++          +A+ ++E  +     L+   
Sbjct: 345 SGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVL 404

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  +I    K GR+D A  + +EM ++   P+   + SL+D++ KA  ++ ++  +  M+
Sbjct: 405 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK 464

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
                P+   Y  LI    +  K + A   W +M+  G  PN   +T +I   AK G + 
Sbjct: 465 EMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNIT 524

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLE--------MHA-SSGQVDSAMKL 467
            A S+F   +  G +P  ++++ L+E        M A  +G +D+ M+L
Sbjct: 525 DAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQAGWLDTTMRL 573


>gi|297789717|ref|XP_002862796.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297308523|gb|EFH39054.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 378

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 177/407 (43%), Gaps = 47/407 (11%)

Query: 98  ESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFL---NASAVAKIVEVVNRWKWGPELETQ 154
           +S  V+   K + S+    ++H      +KP+    N   V  I  V+    WG   E  
Sbjct: 16  KSSRVVAVCKHLSSLSDNGENH------EKPYTFEGNRQIVNDICNVLETGAWGSSAENA 69

Query: 155 LDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFD 214
           L  L F P+   +   L+ + D + ++  FRW +R++      E Y  L  V+   R+FD
Sbjct: 70  LSALFFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFD 129

Query: 215 GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
            +  +  EM    +  G S+ +    V+    KA+KL                       
Sbjct: 130 ALDQILGEM--SVAGFGPSVNTCIEMVLS-CVKANKLR---------------------- 164

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
                        + F++ ++M K +     S Y  +I + +     D  + LFQ+M+E 
Sbjct: 165 -------------EGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLALFQQMQEL 211

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
            + P+ ++F +L+    K GR+D+++ +  EM+         +Y   I+S+ K GK+D A
Sbjct: 212 GYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMA 271

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            + + E+   G +P+   +T +I    K+ +LD A+ +F  +E+   +P    Y+ ++  
Sbjct: 272 WKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMG 331

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           + S+G+ D A  L     + G  P +  Y  +LT L K   VD A +
Sbjct: 332 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALR 378



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 121/243 (49%), Gaps = 6/243 (2%)

Query: 299 GECSLDG-----STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           GE S+ G     +T   M+ S  K+ +L     + Q M++  FRP+F+ + +L+ +    
Sbjct: 136 GEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAV 195

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
              D  + ++ +MQ  G+ P+  ++ +LI  +AK G++D+AL L DEM+ +    +  L+
Sbjct: 196 NHSDMMLALFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLY 255

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
            + I+S  K GK+D+A   F ++E  G  P   TY+ ++ +   + ++D A++++  +  
Sbjct: 256 NVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK 315

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDH 532
               P    Y  ++         D A  +L   +  G    V A + ++  ++  G VD 
Sbjct: 316 NRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDE 375

Query: 533 ALR 535
           ALR
Sbjct: 376 ALR 378


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 181/393 (46%), Gaps = 5/393 (1%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++L  + +E+R  + +  L  +M+ D   +      +Y  VI    K   L+ +Y  + +
Sbjct: 167 ILLKGLCDENRSQEALELL--QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +LD     +  +Y+ ++          KA E+  SM K     +  TY  ++     SG+
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
              AI   ++M      P    + SL+D + K GR   + K++  M   G +P    Y +
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++ YA  G L     L D M   G  PN  +F+++I ++AK GK+D AM +F+ M + G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY  ++ +   SG+V+ AM+ +  M    L PG   Y +L+  L      D A 
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES- 558
           +++LEM   G  +D +  + ++  + K+G V  + +    M   G++ +      L +  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           C+   + E+ K LL + V    K D V Y +++
Sbjct: 525 CLAGKMDEATK-LLASMVSVGMKPDCVTYNTLI 556



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 173/377 (45%), Gaps = 3/377 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++ YL K  +   +   F  +     K +  +Y  L+  +  KG   +   + + M 
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 366

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     +   + ++I + AK G++D A+ +F +M+++   P    + +++  + K+GR++
Sbjct: 367 RNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +M+ + +M      P   +Y SLI S     K D A  L  EM   G   +   F  II
Sbjct: 427 DAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSII 486

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +SH K G++  +  +F  M R G  P   TYS L++ +  +G++D A KL  SM S G++
Sbjct: 487 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537
           P   TY  L+    K   ++ A  +  EM++ G S D+   ++++  +       A + L
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606

Query: 538 RFMG--SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            ++G   SG +        +     KN L + A  + +    +  +++   +  ++  L+
Sbjct: 607 -YVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALL 665

Query: 596 RCQDEQNERHLMAILSA 612
           +       + L A LSA
Sbjct: 666 KVGRNDEAKDLFAALSA 682



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 146/326 (44%), Gaps = 7/326 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYESM 296
           Y  VI  L K+ ++E +   F++++D         YN L+          KA E I E +
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++G C LD   +  +I S  K GR+  + KLF  M     +P    +++L+D    AG++
Sbjct: 472 DRGIC-LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + K+   M   G +P    Y +LI  Y K  +++ AL L+ EM  +G  P+   + +I
Sbjct: 531 DEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNII 590

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   ++ +   A  ++  +  +G     STY+ +L     +   D A++++ ++    L
Sbjct: 591 LQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDL 650

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALR 535
           +    T+  ++  L K    D A  +   +   G   DV    ++    I+ G ++    
Sbjct: 651 QLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDD 710

Query: 536 WLRFMGSSGIRTN----NFIVRQLFE 557
               M  +G   N    N IVR+L +
Sbjct: 711 LFLSMEENGCTANSRMLNSIVRKLLQ 736



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 133/353 (37%), Gaps = 42/353 (11%)

Query: 286 PYKAFEIYESMEKG---ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +    E + +  TY ++I S   +GRLD        + ++ FR     
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIA 128

Query: 343 FASLVDSMGKAGRLDTSMKVY---MEMQGC------------------------------ 369
           F  L+  +    R   +M +    M   GC                              
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188

Query: 370 -----GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
                   P    Y ++I  + K G LD A   + EM   G  PN   ++ II +  K+ 
Sbjct: 189 PDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQ 248

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
            +D AM + T M + G +P   TY+ ++  + SSGQ   A+     M S G+ P + TY 
Sbjct: 249 AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSS 543
           +L+  L K      A K+   M   G   +++    +L  Y   G++      L  M  +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           GI  N+++   L  +  K    + A  +     +     D V Y +V+  L +
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 75/375 (20%), Positives = 144/375 (38%), Gaps = 38/375 (10%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    Y  +  +L +S   +  +  F++M+ +    G  +   YN +I  L   
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV---YNSLIHSLCIF 457

Query: 249 DK-----------LEMSYCC----FKKVLDSDCK--------------------IDTQSY 273
           DK           L+   C     F  ++DS CK                     D  +Y
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 517

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + L+  +   G   +A ++  SM       D  TY  +I    K  R++ A+ LF+EM+ 
Sbjct: 518 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES 577

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    +  ++  + +  R   + ++Y+ +   G +     Y  ++    K    D 
Sbjct: 578 SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDE 637

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           ALR++  + +   +     F ++I +  K G+ D A  +F  +   G +P   TYS + E
Sbjct: 638 ALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G ++    L+ SM   G         +++  L +R  +  A   L  +    +S+
Sbjct: 698 NLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSL 757

Query: 514 DVSASDVLMVYIKDG 528
           + S + + +  +  G
Sbjct: 758 EASTASLFLDLLSGG 772


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 183/381 (48%), Gaps = 6/381 (1%)

Query: 167 ITQALKVI-NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           + Q LK   ND   +   F+WAK Q+ Y      Y  + D+L + + FD M  L +EM  
Sbjct: 122 VEQVLKRFSNDWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELVEEM-- 179

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
           D     +SL +   +V++ LA+A + + +   F+ +     K DT + N LM   + +  
Sbjct: 180 DRLGGYVSL-ATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKENS 238

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
              A +++    K    L+  T+ ++I    K+ ++D A+K   EMKE  F P    + S
Sbjct: 239 VEHANDVFVEF-KDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTS 297

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           +V++  +         V  EM+  G  P+   Y  ++ +  K  ++  AL ++++M+ + 
Sbjct: 298 IVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSS 357

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             P+   ++ +I   +K+G+L  A  +F DM + G +P   TY+ ++       Q + A+
Sbjct: 358 CVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDAL 417

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
           KL   M  +  +P L+TY+ LL +  +   + V + +L  M     S++V    +L+  +
Sbjct: 418 KLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGL 477

Query: 526 -KDGSVDHALRWLRFMGSSGI 545
            K G ++HA  +   M S G+
Sbjct: 478 CKSGKLEHACLFFEEMVSKGL 498


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 172/365 (47%), Gaps = 2/365 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           +A   +I  L  A ++  +   F +  L  + K  T++YN L+  ++  G    A ++ +
Sbjct: 264 NAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLD 323

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M +   + D +TY L++ +  ++GR ++A  L +EM+    +PS  +F+ ++      G
Sbjct: 324 EMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRG 383

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
               +  V  EMQ  G RP    Y  +I+++ K   L  A+  +D MR     P+   + 
Sbjct: 384 DWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWN 443

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I++H K G+ D AM +F +M  +   P  +TY+ ++ +     + +    + + M   
Sbjct: 444 TLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQ 503

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           GL P + TYT L+ +  +      A   +  MK  G     +    L+  Y + G  DHA
Sbjct: 504 GLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHA 563

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L  ++ M + G+  +  ++  L  +  ++     A  +L+   E+  + D++ YT+++  
Sbjct: 564 LNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKA 623

Query: 594 LVRCQ 598
           L+R +
Sbjct: 624 LIRVE 628



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 157/351 (44%), Gaps = 12/351 (3%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q    P +  Y +L D    +  ++    L  EM  D  K    +FS   R++       
Sbjct: 327 QCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFS---RILAGFRDRG 383

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
             + ++   +++  S  + D   YNV++  F        A + ++ M + E   D  T+ 
Sbjct: 384 DWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWN 443

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I +  K GR D A++LF+EM+E N  P    +  +++ +G+  R +    +  EM+  
Sbjct: 444 TLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQ 503

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   Y +L++ Y ++G+   A+   + M+  G +P+  ++  ++ ++A+ G  D A
Sbjct: 504 GLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHA 563

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           +++   M+  G   +    + L+       +V  A  +   M   GLRP + TYT L+  
Sbjct: 564 LNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKA 623

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
           L + +  D    I  EM T G + D  A  +L           ALR+++ M
Sbjct: 624 LIRVEQFDKVPVIYEEMITSGCAPDRKARAMLR---------SALRYMKHM 665



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 120/262 (45%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    K + L  +   F ++ + + + D  ++N L+      G   +A E++E M 
Sbjct: 407 YNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMR 466

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C    +TY +MI  L +  R +    +  EMKE+   P+   + +LVD  G++GR  
Sbjct: 467 ESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYK 526

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++     M+  G +PS  MY +L+ +YA+ G  D AL +   M+  G   +  +   +I
Sbjct: 527 EAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLI 586

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  +  ++  A S+   M+  G  P   TY+ L++      Q D    +Y  M ++G  
Sbjct: 587 NAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCA 646

Query: 478 PGLSTYTALLTLLAKRKLVDVA 499
           P       L + L   K + VA
Sbjct: 647 PDRKARAMLRSALRYMKHMRVA 668



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 143/332 (43%), Gaps = 13/332 (3%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAF---EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           D  SY+ L+   LN   P  A     +   + +     D   +  +I + A++   DAA+
Sbjct: 189 DLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAAL 248

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIES 384
           +L    +     P  N   +L+ ++G AGR+  +  +++E    G  +P    Y +L++ 
Sbjct: 249 ELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKG 308

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           Y + G L  A ++ DEM   G  P+   ++++++++ ++G+ + A  +  +ME  G  P+
Sbjct: 309 YVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPS 368

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
              +S +L      G    A  +   M ++G+RP    Y  ++    K   +  A     
Sbjct: 369 SYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFD 428

Query: 505 EMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS----GIRTNNFIVRQLFESC 559
            M+      DV   + L+  + K G  D A+     M  S    G  T N ++  L E  
Sbjct: 429 RMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGE-- 486

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                +E  + +L    E     +++ YT+++
Sbjct: 487 --QERWEGVEAMLSEMKEQGLVPNIITYTTLV 516



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 130/286 (45%), Gaps = 9/286 (3%)

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSM-GKAGRLDTSM--KVYMEMQGCGHRPSAPMYVSL 381
           ++L   ++E +F P    ++ L+ S+       D ++  ++  +++     P AP++  L
Sbjct: 175 LRLLSLLREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDL 234

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I ++A+A   D AL L    +  G  P     T +I +   +G++  A ++F +   AG 
Sbjct: 235 ISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGE 294

Query: 442 L-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           + P    Y+ LL+ +   G + +A ++ + M+  G+ P  +TY+ L+    +    + A 
Sbjct: 295 IKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESAR 354

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +L EM+  G          ++   +D G    A   LR M +SG+R +      + ++ 
Sbjct: 355 ILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTF 414

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQNER 604
            K      A    +   E   + D+V + +++ AH   C+  +++R
Sbjct: 415 GKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAH---CKGGRHDR 457



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 14/227 (6%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++ LF    R+S   PG   Y ++ ++L E   ++G+ ++  EM     +  +     
Sbjct: 456 DRAMELFE-EMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEM---KEQGLVPNIIT 511

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++    ++ + + +  C + +     K     Y+ L+  +  +GL   A  + ++M+
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK 571

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                +       +I +  +  R+  A  + Q MKE   RP    + +L+ ++ +  + D
Sbjct: 572 ADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFD 631

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
               +Y EM   G  P         +  A+A  L +ALR    MR+A
Sbjct: 632 KVPVIYEEMITSGCAP---------DRKARA-MLRSALRYMKHMRVA 668


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 169/371 (45%), Gaps = 5/371 (1%)

Query: 175  NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
            ND   +   F W   Q  Y    + Y ++ D+L + + FD M  L ++MV      G+  
Sbjct: 1464 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVE---VGGLMS 1520

Query: 235  FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
                 +V++ LA A +   +   F K+       DT++ NVL+     +    +A  +++
Sbjct: 1521 LMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQ 1580

Query: 295  SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
             + +G    D +++  ++    K+  L  A+   +EMK+  F PS   + SLV++     
Sbjct: 1581 EL-RGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEK 1639

Query: 355  RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
               T   +  EM+     P+   Y  L+ +  KAG+   AL  +D+++  G  P+   + 
Sbjct: 1640 DFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYN 1699

Query: 415  MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
             +I    ++G+L+ A S+  +M   G  P  +T++ L+       Q ++A+KL   M   
Sbjct: 1700 SLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQ 1759

Query: 475  GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
               P + TYT LL L  KR+ V +   ++  M     S D S   +L+ ++ ++G V  +
Sbjct: 1760 SCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQS 1819

Query: 534  LRWLRFMGSSG 544
              +L  M S G
Sbjct: 1820 CLFLEEMVSKG 1830


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 152/332 (45%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  +   ++VP D C  +L + L + + F  + S + E++       +  F   N
Sbjct: 85  AIECFRLTRENKYWVPFDTCRKVL-EHLMKLKYFKLVWSFYKEILECRYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M   
Sbjct: 141 ILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A KLF EM +R   P+   F +L+D   K G+LD +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M   G  P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +        +Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
             TYT ++    K   V + +K+L EM+  G+
Sbjct: 381 TGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGH 412



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 1/348 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E +    + +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFKLVWSFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+D   K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 KEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G++D AM++Y  M S G  P   TY  L+  L K+  +  A  +  EM  
Sbjct: 245 TTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     K      
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           A+ +L   +    K D   YT V+    +  D +    L+  +    H
Sbjct: 365 AEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGH 412



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 143/311 (45%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  +K++L+         +N+LM  F  +G    A  +++
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWSFYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            + K        ++  ++    K G LD   +L   M     +P    ++ L++ + K  
Sbjct: 161 GITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKES 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + K++ EM   G  P+   + +LI+ + K GKLD A+ ++ +M   GF P+   + 
Sbjct: 221 KMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +++A +    M   
Sbjct: 281 TLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R    +YTAL++ L K      A K+L EM ++G   D     ++M  + K+G V   
Sbjct: 341 NIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMG 400

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 401 SKLLKEMQRDG 411



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 134/300 (44%), Gaps = 1/300 (0%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ F+  +E  +   F+    +++ + K     
Sbjct: 59  KGAQRSDIYVFSGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  C +  S   +  L++ + K G++  A  ++D +   G RP+   F  ++
Sbjct: 119 LVWSFYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K G LD    + + M  +G  P   TYS L+       ++D A KL++ M   GL 
Sbjct: 179 NGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   +D+A +I  +M + G+S D    + L+  + K G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              M   G++ +      L +   K    E+A    +  ++   ++D V YT++++ L +
Sbjct: 299 XDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCK 358



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 95/214 (44%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y+VL+     +    +A ++++ M       +G T+  +I    K+G+LD A++++
Sbjct: 205 DVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIY 264

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           ++M  + F P    + +L+  + K G L  +  +  EM   G +P    Y +LI+   K 
Sbjct: 265 KQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKE 324

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+TA      M     R +   +T +I    K G+   A  +  +M   G  P   TY
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTY 384

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           + ++     +G V    KL   M   G  P + T
Sbjct: 385 TIVMHEFCKNGDVKMGSKLLKEMQRDGHVPCVIT 418


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 182/389 (46%), Gaps = 13/389 (3%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           SL+ F WA     +    E Y  + D+  + R FD    L D M     +  +S FS   
Sbjct: 126 SLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSV-- 183

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +++   +A     +   F ++ D  CK D  S++++++    K    +A   ++S+ K 
Sbjct: 184 -LVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSL-KH 241

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
           +   D   Y  ++    ++G +  A ++F +MKE   +P+   ++ ++DS+ + G++  +
Sbjct: 242 KFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRA 301

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             V+ EM   G  P+A  + SL+  + KAG+ +  L+++++M+  G   +   +  +IES
Sbjct: 302 HDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIES 361

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYS----CLLEMHASSGQVDSAMKLYNSMTSAG 475
           H K   LD A+ +   M + G  P  ST++    C+ E+H     V+ A ++Y  M    
Sbjct: 362 HCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELH----DVNGAHRMYAKMKELK 417

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL-MVYIKDGSVDHAL 534
             P   TY  L+ + A  K +D+  K+  EM       +V+   +L +++ + G  ++A 
Sbjct: 418 CMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAY 477

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
             ++ M        N  + +     ++NA
Sbjct: 478 NLMKEMVEEKCLKPNLSIYETVLELLRNA 506



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 126/264 (47%), Gaps = 2/264 (0%)

Query: 215 GMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           G ++  +E+  D  + G+      Y+ VI  L +  ++  ++  F +++D+ C  +  ++
Sbjct: 261 GDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTF 320

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N LM + +  G   K  ++Y  M++  C+ D  +Y  +I S  K   LD A+K+   M +
Sbjct: 321 NSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVK 380

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           +   P+ + F S+   + +   ++ + ++Y +M+     P+   Y  L+  +A +  +D 
Sbjct: 381 KGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDM 440

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM-ERAGFLPTPSTYSCLL 452
            L+L  EM  +   PN   + ++I    + G  + A ++  +M E     P  S Y  +L
Sbjct: 441 VLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVL 500

Query: 453 EMHASSGQVDSAMKLYNSMTSAGL 476
           E+  ++GQ+    +L   M + G 
Sbjct: 501 ELLRNAGQLKKHEELVEKMVARGF 524


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 198/480 (41%), Gaps = 65/480 (13%)

Query: 155 LDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVL-----NE 209
           L +L FVPK                +L+L   A R   + P    Y  + D L     + 
Sbjct: 142 LSRLGFVPK----------------ALTLLHLANRHG-FAPTVLSYNAVLDALLRRSSSN 184

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
            RD+D    +F +MV    +NG+S     YN +I+ +     LE      +K+       
Sbjct: 185 HRDYDDAERVFRDMV----RNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISP 240

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +  +YN L+     K    +A  +  +M  G  + +  +Y  +I  L   GR+    +L 
Sbjct: 241 NVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELV 300

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM+ +   P    + +LV+   K G L   + +  EM G G  P+   Y +LI    KA
Sbjct: 301 EEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKA 360

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L  A+ ++D+MR+ G RPN   +T +I+   + G ++ A  + ++M  +GF P+  TY
Sbjct: 361 GNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTY 420

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT-------------------- 488
           + L+  +   G+V  A+ +   M   GL P + +Y+ ++                     
Sbjct: 421 NALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVE 480

Query: 489 ----------------LLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVD 531
                           L  ++KLV+ A  +  EM   G   D V+ + ++  Y  DG + 
Sbjct: 481 KGVLPDTVTYSSLIQGLCLQQKLVE-AFDLFREMMRRGLPPDEVTYTSLINAYCVDGELS 539

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            ALR    M   G   +N     L     K A  + AK LL       +  D V Y +++
Sbjct: 540 KALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLI 599



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/402 (20%), Positives = 160/402 (39%), Gaps = 56/402 (13%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAK 247
           R    VP +  Y  L +   +  +    L L  EMV    S N ++    Y  +I  + K
Sbjct: 304 RGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVT----YTTLINCMCK 359

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI--------------- 292
           A  L  +   F ++     + + ++Y  L+  F  KGL  +A+++               
Sbjct: 360 AGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVT 419

Query: 293 YESMEKGECSL--------------------DGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y ++  G C L                    D  +Y  +I    +   L  A ++ +EM 
Sbjct: 420 YNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMV 479

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           E+   P    ++SL+  +    +L  +  ++ EM   G  P    Y SLI +Y   G+L 
Sbjct: 480 EKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELS 539

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            ALRL DEM   GF P+   ++++I    K  +  +A  +   +     +P   TY+ L+
Sbjct: 540 KALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLI 599

Query: 453 EMHASS---------------GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           E  +++               G ++ A +++ +M     +P  + Y  ++   ++   V 
Sbjct: 600 ENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVH 659

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLR 538
            A  + +E++   ++    A   L+    ++G  D   R L+
Sbjct: 660 KAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQ 701



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/289 (19%), Positives = 123/289 (42%), Gaps = 15/289 (5%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ VI    +  +L  ++   +++++     DT +Y+ L+     +    +AF+++  M
Sbjct: 454 SYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREM 513

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D  TY  +I +    G L  A++L  EM +R F P    ++ L++ + K  R 
Sbjct: 514 MRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKART 573

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIES---------------YAKAGKLDTALRLWDEM 401
             + ++ +++      P    Y +LIE+               +   G ++ A R++  M
Sbjct: 574 KVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTM 633

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
                +PN  ++ ++I  H++ G +  A +++ ++E + F         L++  A  G  
Sbjct: 634 LQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMN 693

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           D   +L  ++  +           L+ +  K   +D    +L EM   G
Sbjct: 694 DELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDG 742



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 115/271 (42%), Gaps = 26/271 (9%)

Query: 180 SLSLFRWAKRQSWYVPGDEC-YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY 238
           +  LFR   R+   +P DE  Y  L +      +    L L DEMV    +  +     Y
Sbjct: 506 AFDLFREMMRRG--LPPDEVTYTSLINAYCVDGELSKALRLHDEMVQ---RGFLPDNVTY 560

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           + +I  L K  + +++     K+   +   D  +YN L+     +      F+  E + K
Sbjct: 561 SVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLI-----ENCSNNEFKSVEGLVK 615

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
           G C                 G ++ A ++F+ M +RN +P+  I+  ++    + G +  
Sbjct: 616 GFC---------------MKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHK 660

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  +YME++           ++L+++ A+ G  D   RL   +  +    +  +  +++E
Sbjct: 661 AYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVE 720

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
            + K G +D  +++ T+M + G LP    +S
Sbjct: 721 VNFKEGNMDAVLNVLTEMAKDGLLPDGGIHS 751


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/521 (21%), Positives = 220/521 (42%), Gaps = 42/521 (8%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  +      +  F+    L D++     +  I    ++N ++  L K  K++ 
Sbjct: 319 VPCAYAYNTMIMGYGSAGQFENAYKLLDQL---KERGCIPSVVSFNSILTCLGKKRKVDE 375

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F+  +  D + ++ +YN+++ +    G   +A+ I + ME      +  T  +M+ 
Sbjct: 376 ALTLFE-AMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVD 434

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K+ + + A ++F+   +R   P+   + SL+D +GK G +D + +++  M   GH  
Sbjct: 435 RLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNA 494

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +  +Y SLI ++   G+ +   +++ EM   G +P+  L    ++   K+G ++   +IF
Sbjct: 495 NPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIF 554

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            D++  GFLP   +YS L+     +GQ      ++++M   G       Y A++    K 
Sbjct: 555 EDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKS 614

Query: 494 KLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
             +D A ++L EMK       V+    ++    K   +D A        S GI  N  + 
Sbjct: 615 GKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVY 674

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
             L +   K    + A  +LE  ++     ++  + S++  LV+ + E NE         
Sbjct: 675 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAE-EINE--------- 724

Query: 613 TKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQI 672
                 A +C                    F  +  E++     Y  ++L+N L  + + 
Sbjct: 725 ------ALIC--------------------FQSMK-EMKCSPNTYTYSILINGLCRVQKY 757

Query: 673 NRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
           N+A   W+   +  L P  + +   IA    V N++   +L
Sbjct: 758 NKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSL 798



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 147/313 (46%), Gaps = 4/313 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            R  DG   +F EM     +  ++L + Y   +  + KA  +E     F+ +       D
Sbjct: 510 GRKEDGH-KIFKEMNRRGCQPDLTLLNTY---MDCVFKAGDVEKGRAIFEDIKGYGFLPD 565

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            +SY++L+      G   +   I+ +M++   +LD   Y  ++    KSG+LD A ++ +
Sbjct: 566 VRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLE 625

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EMK +   P+   + S++D + K  RLD +  ++ E +  G   +  +Y SLI+ + K G
Sbjct: 626 EMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVG 685

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++D A  + +EM   G  PN   +  ++++  K+ +++ A+  F  M+     P   TYS
Sbjct: 686 RIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYS 745

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+       + + A   +  M   GL P + TYT ++  LAK   +  A  +    K  
Sbjct: 746 ILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKAN 805

Query: 510 GYSVDVSASDVLM 522
           G + D ++ + L+
Sbjct: 806 GGTPDAASFNALI 818



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 164/343 (47%), Gaps = 18/343 (5%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           S Y ++I ++A++ + + A++L ++M+E  +     +F +LV ++ + GR++ ++ +  E
Sbjct: 183 SAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDE 242

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           ++G    P   +Y   I+ + KAG +D A + + E++  G +P+   +T +I    K+G+
Sbjct: 243 VKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGR 302

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           L  A  +F  ME    +P    Y+ ++  + S+GQ ++A KL + +   G  P + ++ +
Sbjct: 303 LSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNS 362

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           +LT L K++ VD A  +   MK        + + ++ +    G V+ A      M  +G+
Sbjct: 363 ILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGL 422

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
             N   V  + +   K   +E A  + ET  +     + V Y S++  L +  +  +   
Sbjct: 423 FPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYR 482

Query: 606 LMAILSATKHKAHAFLCGLFTGPEQRKQPVL--SFVREFF-HG 645
           L   +  T H A+               PV+  S +R FF HG
Sbjct: 483 LFENMLDTGHNAN---------------PVVYTSLIRNFFMHG 510



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 172/374 (45%), Gaps = 4/374 (1%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           FSAY  +I  +A+A + E +    +++ +   ++    +  L+     +G    A  + +
Sbjct: 182 FSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVD 241

Query: 295 SMEKGEC-SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            + KG C   D   Y + I    K+G +D A K F E+K +  +P    + S++  + KA
Sbjct: 242 EV-KGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKA 300

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           GRL  + +++ +M+     P A  Y ++I  Y  AG+ + A +L D+++  G  P+   F
Sbjct: 301 GRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSF 360

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             I+    K  K+D A+++F  M++    P  STY+ +++M   +G+V+ A  + + M  
Sbjct: 361 NSILTCLGKKRKVDEALTLFEAMKKDA-EPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEH 419

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
           AGL P L T   ++  L K K  + A ++       G + + V+   ++    K G+VD 
Sbjct: 420 AGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDD 479

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A R    M  +G   N  +   L  +   +   E    + +       + DL L  + + 
Sbjct: 480 AYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMD 539

Query: 593 HLVRCQDEQNERHL 606
            + +  D +  R +
Sbjct: 540 CVFKAGDVEKGRAI 553



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/496 (21%), Positives = 216/496 (43%), Gaps = 21/496 (4%)

Query: 128 PFL--NASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFR 185
           PFL  + +A+ K++E ++   +G       D +  + +   +  A +VI           
Sbjct: 122 PFLSHDLAAMEKVLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIA---------- 171

Query: 186 WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245
            A R+  + P    Y +L   + E+R  +  L L  +M     + G+ LF+    +++ L
Sbjct: 172 -AMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTT---LVRAL 227

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
           A+  ++E +     +V  S  + D   YNV +  F   G    A++ +  ++      D 
Sbjct: 228 AREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDD 287

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            +Y  MI  L K+GRL  A +LF +M+     P    + +++   G AG+ + + K+  +
Sbjct: 288 VSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQ 347

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           ++  G  PS   + S++    K  K+D AL L++ M+     PN   + +II+    +GK
Sbjct: 348 LKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMK-KDAEPNSSTYNIIIDMLCMAGK 406

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           ++ A  I  +ME AG  P   T + +++    + + + A +++ + +  G  P   TY +
Sbjct: 407 VEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCS 466

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
           L+  L K+  VD A ++   M   G++ + V  + ++  +   G  +   +  + M   G
Sbjct: 467 LIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRG 526

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
            + +  ++    +   K    E  + + E         D+  Y+ ++  L +       R
Sbjct: 527 CQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKA---GQAR 583

Query: 605 HLMAILSATKHKAHAF 620
              +I  A K +  A 
Sbjct: 584 ETSSIFHAMKQQGFAL 599



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I  L KA +   +   F  +      +D ++YN ++  F   G   KA+E+ E M
Sbjct: 568 SYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEM 627

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +        +TY  +I  LAK  RLD A  LF+E K +    +  +++SL+D  GK GR+
Sbjct: 628 KVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRI 687

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  +  EM   G  P+   + SL+++  KA +++ AL  +  M+     PN   ++++
Sbjct: 688 DEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSIL 747

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    +  K + A   + +M++ G +P   TY+ ++   A  G +  A  L+    + G 
Sbjct: 748 INGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGG 807

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            P  +++ AL+  ++       A  +  E +  G  ++V A   L+
Sbjct: 808 TPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLL 853



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 119/243 (48%), Gaps = 3/243 (1%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           L    Y  ++P L  S  L A  K+ +EM    +       A LV ++ +  RLD + +V
Sbjct: 112 LPADAYNAVLPFL--SHDLAAMEKVLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERV 169

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
              M+    RP+   Y  LI + A+A + + AL L  +M+  G+     LFT ++ + A+
Sbjct: 170 IAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAR 229

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            G+++ A+++  +++ +   P    Y+  ++    +G VD A K ++ + S GL+P   +
Sbjct: 230 EGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVS 289

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKT-MGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541
           YT+++ +L K   +  A ++  +M+T        + + ++M Y   G  ++A + L  + 
Sbjct: 290 YTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLK 349

Query: 542 SSG 544
             G
Sbjct: 350 ERG 352


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 168/378 (44%), Gaps = 9/378 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++  L K  +L+ +     ++ D  C+ +  +YN L+        P +A E++E M+
Sbjct: 82  YTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMK 141

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER-------NFRPSFNIFASLVDSM 350
             ECS    TY  ++  L ++G+L+ A+ LFQEM +R          P+   ++ L+D +
Sbjct: 142 SVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGL 201

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            KA R+  ++++   M+  G  P    Y  L++   K  K+  A  +  EM  AG  PN 
Sbjct: 202 CKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNL 261

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +  ++    ++ ++  A+++  DM   G  P   TY  L++     G+V  A  +   
Sbjct: 262 VTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLAD 321

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGS 529
           M   G  P L  Y  L+  L K   VD +  +L    + G   D V+ S V+    +   
Sbjct: 322 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNR 381

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +D A R L ++ S G   +  +   L +   K    + A  L E         D+V Y++
Sbjct: 382 LDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYST 441

Query: 590 VLAHLVRCQDEQNERHLM 607
           ++  L +     +E HL+
Sbjct: 442 LIDGLCK-AGRVDEAHLL 458



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 183/409 (44%), Gaps = 19/409 (4%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L        + D     FDEM    SKN +      + +I  L KA +   +  CF+
Sbjct: 12  YAALLRGFCRGGEIDQAQRCFDEM---RSKNLVPNVFLCSILIDGLCKAKRSIDALRCFR 68

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +  S    DT  Y  L++    +    +A  I   M    C  +  TY  +I  L K+ 
Sbjct: 69  AMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNN 128

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM---------QGCG 370
             D A +LF+ MK     PS   + +L+D + + G+L+ +M ++ EM           C 
Sbjct: 129 EPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCS 188

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P+   Y  LI+   KA ++  A+ L + M+  G  P+   +T++++   K  K+  A 
Sbjct: 189 --PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAW 246

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +  +M  AG +P   TY+ LL     + +V  A+ L   MT  G  P + TY  L+  L
Sbjct: 247 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 306

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K   V  A  +L +M   G + D+   ++L+  + K   VD ++  LR   S GI+ + 
Sbjct: 307 CKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDV 366

Query: 550 FIVRQ-LFESCMKNALYESAKPLLETYVES-AAKVDLVLYTSVLAHLVR 596
                 ++  C  N L E+ + LL  YV+S     D++LY++++  L +
Sbjct: 367 VTYSSVIYGLCRSNRLDEACRLLL--YVKSRGCPPDVILYSTLIDGLCK 413



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 178/432 (41%), Gaps = 11/432 (2%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV----HDSSKN 230
           N+ D +  LF   K      P    Y  L D L  +   +  ++LF EM+    HD    
Sbjct: 128 NEPDRAQELFEHMKSVECS-PSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDR 186

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
                  Y+ +I  L KA+++  +    + +    C  D  +Y +L+     +     A+
Sbjct: 187 CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAW 246

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           E+   M    C  +  TY  ++  L ++ R+  A+ L ++M  R   P+   + +L+D +
Sbjct: 247 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 306

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K GR+  +  +  +M   G  P   +Y  LI    KA ++D ++ L       G +P+ 
Sbjct: 307 CKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDV 366

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             ++ +I    +S +LD A  +   ++  G  P    YS L++    +G+VD A  LY  
Sbjct: 367 VTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEV 426

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GS 529
           M   G    + TY+ L+  L K   VD A  +L  M  MG        + L+  + D   
Sbjct: 427 MAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNH 486

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE-----TYVESAAKVDL 584
           +D A+  +  M  S    +      L     +    +SA  LLE             +D 
Sbjct: 487 LDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDT 546

Query: 585 VLYTSVLAHLVR 596
           + Y+S++  L +
Sbjct: 547 IAYSSLIDGLCK 558



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 8/304 (2%)

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           C  D  TY  ++    + G +D A + F EM+ +N  P+  + + L+D + KA R   ++
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           + +  MQG G      +Y +L+    K  +LD AL +  EMR  G  PN   +  +I+  
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-------TS 473
            K+ + D A  +F  M+     P+  TY+ LL+    +G+++ AM L+  M         
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMD 184

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDH 532
               P + TY+ L+  L K   V  A ++L  MK  G S DV    +L+  + K+  V  
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 244

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A   LR M  +G   N      L     +      A  L+          ++V Y +++ 
Sbjct: 245 AWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLID 304

Query: 593 HLVR 596
            L +
Sbjct: 305 GLCK 308



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 141/319 (44%), Gaps = 11/319 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D L +        ++  +M+    K G      YN +I  L KAD+++ S    +
Sbjct: 299 YGTLIDGLCKVGRVKDACAMLADMI---DKGGTPDLMIYNMLINGLCKADQVDESIALLR 355

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           + +    K D  +Y+ ++          +A  +   ++   C  D   Y  +I  L K+G
Sbjct: 356 RAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAG 415

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           ++D A  L++ M           +++L+D + KAGR+D +  +   M   G  PS   Y 
Sbjct: 416 KVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYN 475

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SLI+       LD A+ L +EM  +   P+   + ++I    +  ++D A+ +  +  +A
Sbjct: 476 SLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAV-VLLEQAKA 534

Query: 440 GFLPTPST------YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             +    T      YS L++    +G+V  A+  +  M   G+ P   TY+ LL  L K 
Sbjct: 535 RCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKS 594

Query: 494 K-LVDVAAKILLEMKTMGY 511
           K L ++   +L +M  +GY
Sbjct: 595 KDLHELRHLVLDQMVQLGY 613



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 9/214 (4%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D L ++   D    L++ M  D     +     Y+ +I  L KA +++ ++    
Sbjct: 404 YSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVV---TYSTLIDGLCKAGRVDEAHLLLA 460

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++       T +YN L+    +     +A E+ E ME+  C+    TY ++I  + +  
Sbjct: 461 RMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRME 520

Query: 320 RLDAAIKLFQEMKERNFRPSFNI-----FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           R+D+A+ L ++ K R             ++SL+D + KAGR+  ++  + EM   G  P 
Sbjct: 521 RVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPD 580

Query: 375 APMYVSLIESYAKAGKLDTALRL-WDEMRIAGFR 407
              Y  L+E   K+  L     L  D+M   G+R
Sbjct: 581 HITYSILLEGLKKSKDLHELRHLVLDQMVQLGYR 614


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 198/463 (42%), Gaps = 27/463 (5%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           PE+ T    L  + K  H   A+++ +D      +     R   Y+     Y  +   L 
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFDD------MINVGIRPDVYI-----YTGVIRSLC 238

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK 267
           E +D    LS   EM+      G  +    YN +I  L K  K+  +    K +   + K
Sbjct: 239 ELKD----LSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELK 294

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            D  +Y  L+             E+ + M +   S   +    ++  L K G+++ A+ L
Sbjct: 295 PDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNL 354

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
            + + E    P+  ++ +L+DS+ K    D +  ++  M   G  P+   Y  LI+ + +
Sbjct: 355 VKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCR 414

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            GKLDTAL    EM   G +P+   +  +I  H K G +  A S+  +M      PT  T
Sbjct: 415 RGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVT 474

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+  + S G+++ A++LY+ MT  G+ P + T+T LL+ L +  L+  A K+  EM 
Sbjct: 475 YTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMA 534

Query: 508 TMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
                 +    +V++  Y ++G++  A  +L  M   GI  + +  R L           
Sbjct: 535 EWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQAS 594

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVR----------CQD 599
            AK  ++   +   +++ + YT +L    R          CQD
Sbjct: 595 EAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQD 637



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/463 (21%), Positives = 184/463 (39%), Gaps = 51/463 (11%)

Query: 142 VNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWY--VPGDEC 199
           V  ++ G E+  ++ +L+F P    ++  ++ +             KR + +   P    
Sbjct: 310 VQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFV 369

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           Y  L D L + R+FD    LFD M     K G+      Y+ +I    +  KL+ +    
Sbjct: 370 YNALIDSLCKGRNFDEAELLFDRM----GKIGLCPNDVTYSILIDMFCRRGKLDTALSFL 425

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            +++D   K     YN L+                     G C               K 
Sbjct: 426 GEMIDMGLKPSVYPYNSLIN--------------------GHC---------------KF 450

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G + AA  L  EM  +   P+   + SL+      G+++ ++++Y EM G G  PS   +
Sbjct: 451 GDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTF 510

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +L+    +AG +  A++L+ EM     +PN   + ++IE + + G +  A     +M  
Sbjct: 511 TTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIE 570

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G +P   +Y  L+     +GQ   A    + +           YT LL    +   ++ 
Sbjct: 571 KGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEE 630

Query: 499 AAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHA-----LRWLRFMGSSGIRTNNFIVR 553
           A  +  +M   G  +D+    VL+    DGS+ H      L  L+ M   G++ ++ I  
Sbjct: 631 ALSVCQDMGLRGVDLDLVCYGVLI----DGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYT 686

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            + ++  K   ++ A  + +  +      + V YT+V+  L +
Sbjct: 687 SMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCK 729



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 141/325 (43%), Gaps = 3/325 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I+   +   +  ++    ++++     DT SY  L+      G   +A    + +
Sbjct: 544 TYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGL 603

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            KG C L+   Y  ++    + G+L+ A+ + Q+M  R        +  L+D   K    
Sbjct: 604 HKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDR 663

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
              + +  EM   G +P   +Y S+I++ +K G    A  +WD M   G  PN   +T +
Sbjct: 664 KVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAV 723

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS-GQVDSAMKLYNSMTSAG 475
           I    K+G ++ A  + + M     +P   TY C L++     G +  A++L+N++   G
Sbjct: 724 INGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILK-G 782

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHAL 534
           L    +TY  L+    ++  ++ A++++  M   G S D ++ + ++    +   V  A+
Sbjct: 783 LLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAI 842

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESC 559
                M   GIR +      L   C
Sbjct: 843 ELWNSMTEKGIRPDRVAYNTLIHGC 867



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 96/475 (20%), Positives = 174/475 (36%), Gaps = 88/475 (18%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P D  Y +L D+       D  LS   EM+    K  +     YN +I    K   +  +
Sbjct: 400 PNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVY---PYNSLINGHCKFGDISAA 456

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                ++++   +    +Y  LM  + +KG   KA  +Y  M          T+  ++  
Sbjct: 457 ESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSG 516

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L ++G +  A+KLF EM E N +P+   +  +++   + G +  + +   EM   G  P 
Sbjct: 517 LFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPD 576

Query: 375 A----PM-------------------------------YVSLIESYAKAGKLDTALR--- 396
                P+                               Y  L+  + + GKL+ AL    
Sbjct: 577 TYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQ 636

Query: 397 --------------------------------LWDEMRIAGFRPNFGLFTMIIESHAKSG 424
                                           L  EM   G +P+  ++T +I++ +K+G
Sbjct: 637 DMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTG 696

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
               A  I+  M   G +P   TY+ ++     +G V+ A  L + M      P   TY 
Sbjct: 697 DFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYG 756

Query: 485 ALLTLLAK-----RKLVDVAAKIL--LEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537
             L +L K     +K V++   IL  L   T  Y++ +        + + G ++ A   +
Sbjct: 757 CFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRG------FCRQGRMEEASELI 810

Query: 538 RFMGSSGIRTNNFIVRQLF-ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             M   G+  +      +  E C +N + + A  L  +  E   + D V Y +++
Sbjct: 811 TRMIGDGVSPDCITYTTMISELCRRNDV-KKAIELWNSMTEKGIRPDRVAYNTLI 864



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 98/226 (43%), Gaps = 2/226 (0%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
            K++ D   K D   Y  ++      G   +AF I++ M    C  +  TY  +I  L K
Sbjct: 670 LKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCK 729

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA-GRLDTSMKVYMEMQGCGHRPSAP 376
           +G ++ A  L  +M+  N  P+   +   +D + K  G +  +++++  +   G   +  
Sbjct: 730 AGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILK-GLLANTA 788

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y  LI  + + G+++ A  L   M   G  P+   +T +I    +   +  A+ ++  M
Sbjct: 789 TYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSM 848

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
              G  P    Y+ L+     +G++  A +L N M   GL+P   T
Sbjct: 849 TEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTET 894



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 9/218 (4%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS-KNGISLFSAYNRVIQYLAKADKLEM 253
           P D  Y  + D  +++ DF     ++D M+++    N ++    Y  VI  L KA  +  
Sbjct: 680 PDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVT----YTAVINGLCKAGFVNE 735

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP--YKAFEIYESMEKGECSLDGSTYELM 311
           +     K+   +   +  +Y   + + L KG+    KA E++ ++ KG  + + +TY ++
Sbjct: 736 AEILCSKMRPGNSVPNQVTYGCFLDI-LTKGVGDMKKAVELHNAILKGLLA-NTATYNML 793

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I    + GR++ A +L   M      P    + +++  + +   +  +++++  M   G 
Sbjct: 794 IRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGI 853

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           RP    Y +LI     AG++  A  L +EM   G +PN
Sbjct: 854 RPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPN 891



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 1/219 (0%)

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           LD  +   M M      P      +L+    K      A+ L+D+M   G RP+  ++T 
Sbjct: 173 LDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTG 232

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I S  +   L  A  +   ME  G       Y+ L++      +V  A+ +   +    
Sbjct: 233 VIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKE 292

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHAL 534
           L+P + TY  L+  L K +  +V  +++ EM  + +S   +A   L+  + K G V+ AL
Sbjct: 293 LKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEAL 352

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
             ++ +   G+  N F+   L +S  K   ++ A+ L +
Sbjct: 353 NLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFD 391



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 104/261 (39%), Gaps = 5/261 (1%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           CY +L D   + +D    L L  EM HD       +   Y  +I   +K    + ++  +
Sbjct: 649 CYGVLIDGSLKHKDRKVFLGLLKEM-HDRGLKPDDVI--YTSMIDAKSKTGDFKEAFGIW 705

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             +++  C  +  +Y  ++      G   +A  +   M  G    +  TY   +  L K 
Sbjct: 706 DLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKG 765

Query: 319 -GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G +  A++L   +  +    +   +  L+    + GR++ + ++   M G G  P    
Sbjct: 766 VGDMKKAVELHNAIL-KGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCIT 824

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y ++I    +   +  A+ LW+ M   G RP+   +  +I     +G++  A  +  +M 
Sbjct: 825 YTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEML 884

Query: 438 RAGFLPTPSTYSCLLEMHASS 458
           R G  P   T    +   +SS
Sbjct: 885 RQGLKPNTETSETTISNDSSS 905


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 181/393 (46%), Gaps = 5/393 (1%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++L  + +E+R  + +  L  +M+ D   +      +Y  VI    K   L+ +Y  + +
Sbjct: 167 ILLKGLCDENRSQEALELL--QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +LD     +  +Y+ ++          KA E+  SM K     +  TY  ++     SG+
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
              AI   ++M      P    + SL+D + K GR   + K++  M   G +P    Y +
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++ YA  G L     L D M   G  PN  +F+++I ++AK GK+D AM +F+ M + G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY  ++ +   SG+V+ AM+ +  M    L PG   Y +L+  L      D A 
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES- 558
           +++LEM   G  +D +  + ++  + K+G V  + +    M   G++ +      L +  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           C+   + E+ K LL + V    K D V Y +++
Sbjct: 525 CLAGKMDEATK-LLASMVSVGMKPDCVTYNTLI 556



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 173/378 (45%), Gaps = 3/378 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++ YL K  +   +   F  +     K +  +Y  L+  +  KG   +   + + M
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     +   + ++I + AK G++D A+ +F +M+++   P    + +++  + K+GR+
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +M+ + +M      P   +Y SLI S     K D A  L  EM   G   +   F  I
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+SH K G++  +  +F  M R G  P   TYS L++ +  +G++D A KL  SM S G+
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
           +P   TY  L+    K   ++ A  +  EM++ G S D+   ++++  +       A + 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 537 LRFMG--SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           L ++G   SG +        +     KN L + A  + +    +  +++   +  ++  L
Sbjct: 606 L-YVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 595 VRCQDEQNERHLMAILSA 612
           ++       + L A LSA
Sbjct: 665 LKVGRNDEAKDLFAALSA 682



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 146/327 (44%), Gaps = 7/327 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYES 295
            Y  VI  L K+ ++E +   F++++D         YN L+          KA E I E 
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +++G C LD   +  +I S  K GR+  + KLF  M     +P    +++L+D    AG+
Sbjct: 471 LDRGIC-LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D + K+   M   G +P    Y +LI  Y K  +++ AL L+ EM  +G  P+   + +
Sbjct: 530 MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I++   ++ +   A  ++  +  +G     STY+ +L     +   D A++++ ++    
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHAL 534
           L+    T+  ++  L K    D A  +   +   G   DV    ++    I+ G ++   
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 709

Query: 535 RWLRFMGSSGIRTN----NFIVRQLFE 557
                M  +G   N    N IVR+L +
Sbjct: 710 DLFLSMEENGCTANSRMLNSIVRKLLQ 736



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 133/353 (37%), Gaps = 42/353 (11%)

Query: 286 PYKAFEIYESMEKG---ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +    E + +  TY ++I S   +GRLD        + ++ FR     
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIA 128

Query: 343 FASLVDSMGKAGRLDTSMKVY---MEMQGC------------------------------ 369
           F  L+  +    R   +M +    M   GC                              
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188

Query: 370 -----GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
                   P    Y ++I  + K G LD A   + EM   G  PN   ++ II +  K+ 
Sbjct: 189 PDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQ 248

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
            +D AM + T M + G +P   TY+ ++  + SSGQ   A+     M S G+ P + TY 
Sbjct: 249 AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSS 543
           +L+  L K      A K+   M   G   +++    +L  Y   G++      L  M  +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           GI  N+++   L  +  K    + A  +     +     D V Y +V+  L +
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 147/384 (38%), Gaps = 38/384 (9%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    Y  +  +L +S   +  +  F++M+ +    G  +   YN +I  L   
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV---YNSLIHSLCIF 457

Query: 249 DK-----------LEMSYCC----FKKVLDSDCK--------------------IDTQSY 273
           DK           L+   C     F  ++DS CK                     D  +Y
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 517

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + L+  +   G   +A ++  SM       D  TY  +I    K  R++ A+ LF+EM+ 
Sbjct: 518 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES 577

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    +  ++  + +  R   + ++Y+ +   G +     Y  ++    K    D 
Sbjct: 578 SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDE 637

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           ALR++  + +   +     F ++I +  K G+ D A  +F  +   G +P   TYS + E
Sbjct: 638 ALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G ++    L+ SM   G         +++  L +R  +  A   L  +    +S+
Sbjct: 698 NLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSL 757

Query: 514 DVSASDVLMVYIKDGSVDHALRWL 537
           + S + + +  +  G      R+L
Sbjct: 758 EASTASLFLDLLSGGKYQEYHRFL 781


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 127/535 (23%), Positives = 216/535 (40%), Gaps = 46/535 (8%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQ-YLAKADKLEMSYCCF 258
           ++L  + +E+R    +  L   MV D ++ G      +YN VI   L +  +L+ +Y  F
Sbjct: 167 ILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLF 226

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++LD     D  +YN +++         KA  +   M K     +  T+  ++     S
Sbjct: 227 DQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSS 286

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G+ + AI +F+ M      P    + +L+  + K GR   + K++  M   GH+P++  Y
Sbjct: 287 GKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATY 346

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +L+  YA  G L     L D M   G +P+  +F ++I ++ K GK+D AM +F+ M R
Sbjct: 347 GTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRR 406

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P   TY  +++     G+VD AM  +  + S GL P    +  L+  L  R   D 
Sbjct: 407 QGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDK 466

Query: 499 AAKILLEMKTMGYS-------------------------------VDVSASDVLMV---- 523
           A ++ +EM   G                                 VDV   DV+      
Sbjct: 467 AEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQ-RDVITYNTLI 525

Query: 524 --YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             Y   G VD A + L  M   G++ N      +     KN   E A  L          
Sbjct: 526 DGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVN 585

Query: 582 VDLVLYTSVLAHL--VRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFV 639
             +V Y+++L  L   R      E +L  I S  K     +   L    +         +
Sbjct: 586 PGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRI 645

Query: 640 REFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVF 694
            +  + ID+ LE    R F N++++ L+  G+ + A+ ++       L P  + +
Sbjct: 646 FQNLYLIDFHLEN---RTF-NIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTY 696



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 131/295 (44%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N ++ +L K   +  +   F  ++  D + D  +YN L+  +   G   +A ++ E M 
Sbjct: 486 FNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMV 545

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +  TY  MI    K+GR++ A  LF++M  +   P    +++++  + +A R  
Sbjct: 546 LDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTA 605

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + ++Y+ M   G +     Y  ++    +    D ALR++  + +  F      F ++I
Sbjct: 606 AAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMI 665

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           ++  K G+ D A  +F  +   G +P   TY  +++     G ++    L+ S+   G  
Sbjct: 666 DALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCT 725

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDH 532
                  AL+  L ++  V  A   L ++    +S++ S ++ L++ +  G  D 
Sbjct: 726 ANSRMLNALVGKLLQKGEVRKAGVYLSKIDENNFSLEASTAESLVLLVSSGKYDQ 780



 Score = 44.7 bits (104), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 97/234 (41%), Gaps = 13/234 (5%)

Query: 371 HRPSAPMYVSLIESYAKAGKLD--TALRLWDEMRIAG---FRPNFGLFTMIIESHAKSGK 425
           HRP+    V L  + + A +     A+ L+  M +       PN   ++++I+  ++ G 
Sbjct: 47  HRPTTSSIVDLNRALSDAARHSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGH 106

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL-YNSMTSAGLRPGLSTYT 484
           LD+A +    + R+G+     T+S LL+      +   AM +    M   G  P + +YT
Sbjct: 107 LDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYT 166

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTM-----GYSVD-VSASDVLMVYIKDG-SVDHALRWL 537
            LL  L        A  +L  M        GY  D VS + V+   +++G  +D A    
Sbjct: 167 ILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLF 226

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             M   G+  +      +  +  K    + A  +L   V++ A  + + + S+L
Sbjct: 227 DQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLL 280


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 160/342 (46%), Gaps = 3/342 (0%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           SLF  M+ D  +  +  ++    +  YL +  KL+ +    + + +S  K D   YN L+
Sbjct: 3   SLFYRMMKDGCEATVVTYTVI--IHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLV 60

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
              +N G    A +I + M++ + S +  TY  +I   A +GRL    KLFQEMK++   
Sbjct: 61  NGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGES 120

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P+   + +L+   G+ G    ++++Y EM G G       Y   I  Y K G L+   RL
Sbjct: 121 PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERL 180

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
            DEM   G  P+   +  +++ +AK      A  I  +M  AG+ P   TY+ +L     
Sbjct: 181 LDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARK 240

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVS 516
              V  A +L+ ++ S G+ P + TY+A+L+L  +  L   AAK+  EM   G     ++
Sbjct: 241 EQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIA 300

Query: 517 ASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            S ++  Y   G    AL   + M  SGI  +  I   L ++
Sbjct: 301 YSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDA 342



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 149/338 (44%), Gaps = 6/338 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFS 236
           D +L L    K +S   P +  Y  L + L  S   +    + D+M  D  S N ++   
Sbjct: 35  DHALRLLEVMK-ESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKRDKVSANLVT--- 90

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I+  A   +L+     F+++ D     ++ +YN L+  +  KGL  +A E+Y+ M
Sbjct: 91  -YTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEM 149

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +   C+ D  TY + I    K G L+   +L  EM  +   P    + +L+D   K    
Sbjct: 150 DGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYF 209

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++  EM   G+RP+   Y  ++ S  K   +  A +L++ ++  G  PN   ++ +
Sbjct: 210 VKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAM 269

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  + + G    A  ++ +M  AG +P    YS L+E +   G    A+  +  M  +G+
Sbjct: 270 LSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGI 329

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
            P    YTAL+    K      A  +  EM   G+  D
Sbjct: 330 VPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPD 367



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 17/256 (6%)

Query: 213 FDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCK- 267
           F   L L+DEM      +G+        YN  I    K   LE      +++LD  D K 
Sbjct: 139 FKEALELYDEM------DGVGCAKDVHTYNIAIAMYGKRGLLED----MERLLDEMDTKG 188

Query: 268 --IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
              D  +YN L+ ++  K    KA EI   M +     +  TY +M+ S  K   +  A 
Sbjct: 189 VPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEAT 248

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +LF+ +K +   P+   +++++   G+ G    + K++ EM   G  P    Y  LIESY
Sbjct: 249 QLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESY 308

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
              G    AL  + +MR +G  P+  ++T +++++ K+G+   A  ++ +M + GF+P  
Sbjct: 309 GHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDG 368

Query: 446 STYSCLLEMHASSGQV 461
            TY  L+   A++G++
Sbjct: 369 ITYGILVRAFANAGRL 384


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 177/393 (45%), Gaps = 4/393 (1%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++L  + +E+R  +  L L   M  D          +Y  VI    K    + +Y  + +
Sbjct: 163 ILLKGLCDENRSQEA-LELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHE 221

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +LD     D  +YN ++          KA E+  +M K     D  TY  ++     SG+
Sbjct: 222 MLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 281

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
              AI   ++M+     P    ++ L+D + K GR   + K++  M   G +P    Y +
Sbjct: 282 PKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGT 341

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++ YA  G L     L D M   G  P+  +F+++I ++AK GK+D AM +F+ M + G
Sbjct: 342 LLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 401

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY  ++ +   SG+V+ AM  +  M   GL PG   Y +L+  L      + A 
Sbjct: 402 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE 461

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES- 558
           +++LEM   G  ++ +  + ++  + K+G V  + +    M   G++ N      L    
Sbjct: 462 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGY 521

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           C+   + E+ K LL   V    K + V Y++++
Sbjct: 522 CLAGKMDEAMK-LLSGMVSVGLKPNTVTYSTLI 553



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 173/382 (45%), Gaps = 4/382 (1%)

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           M  L D MV +       +FS    +I   AK  K++ +   F K+       +  +Y  
Sbjct: 355 MHGLLDLMVRNGIHPDHYVFSI---LICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           ++ +    G    A   +E M     S     Y  +I  L    + + A +L  EM +R 
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
              +   F S++DS  K GR+  S K++  M   G +P+   Y +LI  Y  AGK+D A+
Sbjct: 472 ICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAM 531

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           +L   M   G +PN   ++ +I  + K  +++ A+ +F +ME +G  P   TY+ +L+  
Sbjct: 532 KLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             + +  +A +LY  +T +G +  LSTY  +L  L K KL D A ++   +  M   ++ 
Sbjct: 592 FQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEA 651

Query: 516 SASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
              ++++   +K G  D A        S+G+  N +  R + E+ +   L E    L  +
Sbjct: 652 RTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLS 711

Query: 575 YVESAAKVDLVLYTSVLAHLVR 596
             ++   VD  +   ++  L++
Sbjct: 712 MEDNGCTVDSGMLNFIVRELLQ 733



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 140/286 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ ++ YL K  +   +   F  +     K +  +Y  L+  +  KG   +   + + M
Sbjct: 303 TYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D   + ++I + AK G++D A+ +F +M+++   P+   + +++  + K+GR+
Sbjct: 363 VRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRV 422

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +M  + +M   G  P   +Y SLI       K + A  L  EM   G   N   F  I
Sbjct: 423 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 482

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+SH K G++  +  +F  M R G  P   TY+ L+  +  +G++D AMKL + M S GL
Sbjct: 483 IDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           +P   TY+ L+    K   ++ A  +  EM++ G S D+   ++++
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 132/354 (37%), Gaps = 43/354 (12%)

Query: 286 PYKAFEIYESMEKG---ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +    E + D  TY ++I    ++GRLD        + ++ FR     
Sbjct: 65  PAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIA 124

Query: 343 FASLVDSMGKAGRLDTSMKVYM-------------------------------------- 364
           F  L+  +    R   +M + +                                      
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMM 184

Query: 365 -EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            + +G G  P    Y ++I  + K G  D A   + EM   G  P+   +  II +  K+
Sbjct: 185 ADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKA 244

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
             +D AM +   M + G +P   TY+ +L  + SSGQ   A+     M S G+ P + TY
Sbjct: 245 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY 304

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGS 542
           + L+  L K      A KI   M   G   +++    +L  Y   G++      L  M  
Sbjct: 305 SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR 364

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +GI  ++++   L  +  K    + A  +     +     + V Y +V+  L +
Sbjct: 365 NGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCK 418



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/384 (19%), Positives = 148/384 (38%), Gaps = 38/384 (9%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    Y  +  +L +S   +  +  F++M+ +    G  +   YN +I  L   
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIV---YNSLIHGLCTC 454

Query: 249 DK-----------LEMSYCC----FKKVLDSDCK----IDTQ----------------SY 273
           +K           L+   C     F  ++DS CK    I+++                +Y
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N L+  +   G   +A ++   M       +  TY  +I    K  R++ A+ LF+EM+ 
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    +  ++  + +  R   + ++Y+ +   G +     Y  ++    K    D 
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           AL+++  + +   +     F ++I++  K G+ D A  +F      G +P   TY  + E
Sbjct: 635 ALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 694

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G ++   +L+ SM   G          ++  L +R  +  A   L  +    +S+
Sbjct: 695 NIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSL 754

Query: 514 DVSASDVLMVYIKDGSVDHALRWL 537
           + S + + +  +  G      R+L
Sbjct: 755 EASTASLFIDLLSGGKYQEYYRFL 778


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 175/400 (43%), Gaps = 4/400 (1%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           C ++L  + +E+R  +  L L   M  D          +Y  VI    K    + +Y  +
Sbjct: 161 CTILLKGLCDENRSQEA-LELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTY 219

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++LD     D  +Y+ ++          KA E+  +M K     +  TY  ++     S
Sbjct: 220 HEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSS 279

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
            +   AI   ++M+     P    + SL+D + K GR   + K++  M   G  P    Y
Sbjct: 280 EQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATY 339

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +L++ YA  G L     L D M   G  P+  +F ++I ++AK  K+D AM +F+ M +
Sbjct: 340 CTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQ 399

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P   TY  ++ +   SG VD AM  +  M   GL P +  YT+L+  L      D 
Sbjct: 400 HGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDK 459

Query: 499 AAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A +++LEM   G  ++ +  + ++  + K+G V  + +    M   G++ N      L +
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLID 519

Query: 558 S-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             C+   + E+ K LL +      K D V Y +++    R
Sbjct: 520 GYCLAGKMDEATK-LLSSMFSVGMKPDCVTYNTLINGYCR 558



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 137/286 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++ YL K  +   +   F  +     + D  +Y  L+  +  KG   +   + + M
Sbjct: 303 TYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLM 362

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D   + ++I + AK  ++D A+ +F +M++    P+   + +++  + K+G +
Sbjct: 363 VRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSV 422

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +M  + +M   G  P+  +Y SLI S     K D A  L  EM   G   N   F  I
Sbjct: 423 DDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSI 482

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I SH K G++  +  +F  M R G  P   TYS L++ +  +G++D A KL +SM S G+
Sbjct: 483 IHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGM 542

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           +P   TY  L+    +   +D A  +  EM + G S ++   ++++
Sbjct: 543 KPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIIL 588



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 147/294 (50%), Gaps = 5/294 (1%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   +N+L+  +  +    +A  ++  M +   + +  TY  +I  L KSG +D A+  F
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYF 429

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           ++M +    P+  ++ SL+ S+    + D + ++ +EM   G   +   + S+I S+ K 
Sbjct: 430 EQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKE 489

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G++  + +L+D M   G +PN   ++ +I+ +  +GK+D A  + + M   G  P   TY
Sbjct: 490 GRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTY 549

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+  +    ++D A+ L+  M S+G+ P + TY  +L  L   +    A ++ + +  
Sbjct: 550 NTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITK 609

Query: 509 MGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGI----RTNNFIVRQLFE 557
            G  +++S  ++++  + K+   D ALR  + +  + +    RT N ++  L +
Sbjct: 610 SGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 663



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 150/331 (45%), Gaps = 15/331 (4%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYES 295
            Y  VI  L K+  ++ +   F++++D     +   Y  L+          KA E I E 
Sbjct: 408 TYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEM 467

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +++G C L+   +  +I S  K GR+  + KLF  M     +P+   +++L+D    AG+
Sbjct: 468 LDRGIC-LNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGK 526

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D + K+   M   G +P    Y +LI  Y +  ++D AL L+ EM  +G  PN   + +
Sbjct: 527 MDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNI 586

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I++    + +   A  ++  + ++G     STY+ +L     +   D A++++ ++    
Sbjct: 587 ILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 646

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-----YSVDVSASDVLMVYIKDGSV 530
           L+    T+  ++  L K    D A  + +   + G     ++  + A ++    I  G +
Sbjct: 647 LQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI----IGQGLL 702

Query: 531 DHALRWLRFMGSSGIRTN----NFIVRQLFE 557
           +   +    M  +G   +    NFIVR+L +
Sbjct: 703 EELDQLFFSMEDNGCTVDSGMLNFIVRELLQ 733



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 131/354 (37%), Gaps = 43/354 (12%)

Query: 286 PYKAFEIYESMEK---GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +   G+ +    TY ++I    ++GRLD        + ++ FR     
Sbjct: 65  PAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAIT 124

Query: 343 FASLVDSMGKAGRLDTSMKVYM-------------------------------------- 364
           F  L+  +    R   +M + +                                      
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMM 184

Query: 365 -EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            + +G G  P    Y ++I  + K G  D A   + EM      P+   ++ II +  K 
Sbjct: 185 ADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKG 244

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
             +D AM + T M + G +P   TY+ +L  + SS Q   A+     M S G+ P + TY
Sbjct: 245 QAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTY 304

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGS 542
            +L+  L K      A KI   M   G   D++    +L  Y   G++      L  M  
Sbjct: 305 NSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVR 364

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +GI  ++ +   L  +  K    + A  +     +     ++V Y +V+  L +
Sbjct: 365 NGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCK 418



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/381 (19%), Positives = 147/381 (38%), Gaps = 32/381 (8%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    Y  +  +L +S   D  +  F++M+ +     I ++++    +    K 
Sbjct: 398 RQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKW 457

Query: 249 DK-----LEM-----------------SYCCFKKVLDSD----------CKIDTQSYNVL 276
           DK     LEM                 S+C   +V++S+           K +  +Y+ L
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  +   G   +A ++  SM       D  TY  +I    +  R+D A+ LF+EM     
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV 577

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   +  ++  +    R   + ++Y+ +   G +     Y  ++    K    D ALR
Sbjct: 578 SPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALR 637

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++  + +   +     F ++I +  K G+ D A  +F      G +P   TY  + E   
Sbjct: 638 MFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENII 697

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G ++   +L+ SM   G          ++  L +R  +  A   L  +    +S++ S
Sbjct: 698 GQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEAS 757

Query: 517 ASDVLMVYIKDGSVDHALRWL 537
            + + +  +  G      R+L
Sbjct: 758 TASLFIDLLSGGKYQEYHRFL 778



 Score = 42.4 bits (98), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 122/311 (39%), Gaps = 46/311 (14%)

Query: 429 AMSIFTDMERAG---FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           A+S +  M RAG     PT  TY  L+     +G++D       ++   G R    T+T 
Sbjct: 68  AVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTP 127

Query: 486 LLT-LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFM--- 540
           LL  L A ++  D    +L  M  +    DV +  +L+  + D      AL  L  M   
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADD 187

Query: 541 --GSSG--IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             G S   + +   ++   F+    +  Y +   +L+  +      D+V Y+S++A L  
Sbjct: 188 RGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISP----DVVTYSSIIAAL-- 241

Query: 597 CQDEQNERHLMAILSATKHKA-------HAFLCGLFTGPEQRKQPVLSFVREFFHGIDYE 649
           C+ +  ++ +  + +  K+         ++ L G +   EQ K+ +    +    G+   
Sbjct: 242 CKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHG-YCSSEQPKEAIGFLKKMRSDGV--- 297

Query: 650 LEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFP--------------KAIVFD 695
            E     Y  N L++YL   G+   AR ++    +  L P              K  + +
Sbjct: 298 -EPDVVTY--NSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVE 354

Query: 696 QHIAWSLDVRN 706
            H    L VRN
Sbjct: 355 MHALLDLMVRN 365


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 143/289 (49%), Gaps = 1/289 (0%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  +Y  +I      G L   +KL QEM+ +  +P+   + S++  + K+G++D + +V 
Sbjct: 9   DVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVL 68

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            EM   G  P   +Y +LI+ + K G +  A +L+DEM      P+F  +T +I    + 
Sbjct: 69  REMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRC 128

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           GK+  A  +F  M   G  P   TY+ L++ +  SG+++ A  L+N M  +GL P + TY
Sbjct: 129 GKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTY 188

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGS 542
           TAL   L K   VD A ++L EM   G  +++   + L+  + K G++  A++ +  M  
Sbjct: 189 TALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEV 248

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +G+  +      L ++  K      A  LL   ++   +  ++ +  ++
Sbjct: 249 AGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLM 297



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 137/286 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L K+ K++ +    +++++     DT  Y  L+  F   G    A+++++ M
Sbjct: 47  TYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEM 106

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           EK     D   Y  +I  L + G++  A K+F +M  R   P    + +L+D   K+G +
Sbjct: 107 EKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEM 166

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +  ++ +M   G  P+   Y +L +   K G++DTA  L  EM   G + N   +  +
Sbjct: 167 EKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSL 226

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    KSG +  A+ +  +ME AG  P   T++ L++ +  +G++  A +L   M   GL
Sbjct: 227 VNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGL 286

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           +P + T+  L+       +++   ++L  M   G   + +  + LM
Sbjct: 287 QPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLM 332



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 171/396 (43%), Gaps = 13/396 (3%)

Query: 131 NASAVAKIVEVVNRWKWGPELETQLDKLQ------FVPKMVHITQALKVINDS---DTSL 181
           +A  V     V+N +  G EL+  L  +Q        P +      + ++  S   D + 
Sbjct: 6   DAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAE 65

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
            + R    Q   VP    Y  L D   +  +      LFDEM     +  +  F AY  V
Sbjct: 66  RVLREMINQG-IVPDTVVYTTLIDGFCKLGNIQAAYKLFDEM---EKQRIVPDFIAYTAV 121

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           I  L +  K+  +   F K+     + D  +Y  L+  +   G   KAF ++  M +   
Sbjct: 122 ICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGL 181

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           + +  TY  +   L K G++D A +L  EM  +  + +   + SLV+ + K+G +  ++K
Sbjct: 182 TPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVK 241

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           +  EM+  G  P    + +L+++Y K G++  A  L  EM   G +P    F +++    
Sbjct: 242 LMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFC 301

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
            SG L+    +   M   G +P  +TY+ L++ +     +    ++Y  M + G+ P  +
Sbjct: 302 MSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSN 361

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           TY  L+    K + +  A  +  EM   G+++  S+
Sbjct: 362 TYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASS 397



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 1/228 (0%)

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P    Y ++I  Y   G+L   L+L  EM++ G +PN   +  II    KSGK+D A
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDA 64

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             +  +M   G +P    Y+ L++     G + +A KL++ M    + P    YTA++  
Sbjct: 65  ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICG 124

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
           L +   +  A K+  +M + G   D V+ + ++  Y K G ++ A      M  SG+  N
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPN 184

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                 L +   K    ++A  LL        ++++  Y S++  L +
Sbjct: 185 VVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCK 232



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 34/162 (20%)

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M+  G  P   +YS ++  +   G++   +KL   M   GL+P L TY +++ LL K   
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCK--- 57

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
                                           G VD A R LR M + GI  +  +   L
Sbjct: 58  -------------------------------SGKVDDAERVLREMINQGIVPDTVVYTTL 86

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
            +   K    ++A  L +   +     D + YT+V+  L RC
Sbjct: 87  IDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRC 128


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/494 (22%), Positives = 208/494 (42%), Gaps = 58/494 (11%)

Query: 125 IKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLF 184
           I+ P L + ++  I E++++  W  EL+  L   +       + Q L    DS+  L  F
Sbjct: 10  IQGPILQSLSIPTISELLSKQHWS-ELKPHL---RVTKPATFLDQLLNAGVDSELVLRFF 65

Query: 185 RWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF--------- 235
           +W++++     G E    +   L  S+ +  + S  D  V +      S+F         
Sbjct: 66  KWSQKEYRLSYGLEPTSKVLHFLANSKRYSKVRSFLDSFVKNEKHTVSSVFHSLLLDGGR 125

Query: 236 -SAYNRVIQYL----AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
             A   +I  L     K  +L  +Y  F +  D   K+   S N L++  + +       
Sbjct: 126 PGATALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVE 185

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            +Y+ M K     + +T+ + I  L ++G+L+ A    ++MK     P+   + +LVD  
Sbjct: 186 YVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGY 245

Query: 351 ---GKAGRL-----------------------------------DTSMKVYMEMQGCGHR 372
              G AG++                                     + K + EMQ  G +
Sbjct: 246 CKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLK 305

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y SLI      GKL+ A+ LWD+M   G +PN   +  +I    K   +  A  +
Sbjct: 306 PNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKV 365

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F D+ +   +P   T++ +++ +   G ++    L +SM   G+ P +STY  L+  L +
Sbjct: 366 FDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCR 425

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFI 551
           ++ +  A ++L EM+  G   DV   ++L+  + K+    +A + L  M + G++ N+  
Sbjct: 426 KQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVT 485

Query: 552 VRQLFES-CMKNAL 564
              L +  CM+  L
Sbjct: 486 YNTLMDGYCMEGKL 499



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 182/411 (44%), Gaps = 8/411 (1%)

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243
           F  AK   + +    C  +L  ++ E++  D +  ++ EM+       ++ F+ +   I 
Sbjct: 153 FTRAKDYGFKLSLTSCNPLLSALVKENKIGD-VEYVYKEMIKRRIHTNLNTFNIF---IN 208

Query: 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP---YKAFEIYESMEKGE 300
            L +A KL  +    + +       +  +YN L+  +  +G     YKA    + M   +
Sbjct: 209 GLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANK 268

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              +  T+  +I    K   + AA K F+EM+++  +P+   + SL++ +   G+L+ ++
Sbjct: 269 ICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAI 328

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            ++ +M G G +P+   Y +LI  + K   +  A +++D++      PN   F  +I+++
Sbjct: 329 DLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAY 388

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K G ++   S+ + M   G LP  STY+CL+        + +A +L N M + GL+  +
Sbjct: 389 CKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDV 448

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRF 539
            TY  L+  L K      A K+L EM  +G   +    + LM  Y  +G +  AL     
Sbjct: 449 VTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTR 508

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           M     + N      L +   K    E+A  LL   +E     +   Y  V
Sbjct: 509 MEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 172/365 (47%), Gaps = 2/365 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           +A   +I  L  A ++  +   F +  L  + K  T++YN L+  ++  G    A ++ +
Sbjct: 264 NAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLD 323

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M +   + D +TY L++ +  ++GR ++A  L +EM+    +PS  +F+ ++      G
Sbjct: 324 EMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRG 383

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
               +  V  EMQ  G RP    Y  +I+++ K   L  A+  +++MR  G  P+   + 
Sbjct: 384 DWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWN 443

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I++H K G+ D A  +F +M  +   P  +TY+ ++ +       +    + + M   
Sbjct: 444 TLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQ 503

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           GL P + TYT L+ +  +      A   +  MK  G     +    L+  Y + G  DHA
Sbjct: 504 GLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHA 563

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L  ++ M + G+  +  ++  L  +  ++     A  +L+   E+  + D++ YT+++  
Sbjct: 564 LNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKA 623

Query: 594 LVRCQ 598
           L+R +
Sbjct: 624 LIRVE 628



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 150/340 (44%), Gaps = 6/340 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q    P +  Y +L D    +  ++    L  EM  D  K    +FS   R++       
Sbjct: 327 QCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFS---RILAGFRDRG 383

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
             + ++   +++  S  + D   YNV++  F        A + +  M +     D  T+ 
Sbjct: 384 DWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWN 443

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I +  K GR D A +LF+EM+E N  P    +  +++ +G+    +    +  EM+  
Sbjct: 444 TLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQ 503

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   Y +L++ Y ++G+   A+   + M+  G +P+  ++  ++ ++A+ G  D A
Sbjct: 504 GLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHA 563

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           +++   M+  G   +    + L+       +V  A  +   M   GLRP + TYT L+  
Sbjct: 564 LNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKA 623

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVL---MVYIK 526
           L + +  D    I  EM T G + D  A  +L   + YIK
Sbjct: 624 LIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSGLKYIK 663



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 144/332 (43%), Gaps = 13/332 (3%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAF---EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           D  SY+ L+   LN   P  A     +   + +     D   +  +I + A++   DAA+
Sbjct: 189 DLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAAL 248

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIES 384
           +L    +     P  N   +L+ ++G AGR+  +  +++E    G  +P    Y +L++ 
Sbjct: 249 ELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKG 308

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           Y + G L  A ++ DEM   G  P+   ++++++++ ++G+ + A  +  +ME  G  P+
Sbjct: 309 YVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPS 368

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
              +S +L      G    A  +   M ++G+RP    Y  ++    K   +  A     
Sbjct: 369 SYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFN 428

Query: 505 EMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS----GIRTNNFIVRQLFESC 559
           +M+  G   DV   + L+  + K G  D A      M  S    G  T N ++  L E  
Sbjct: 429 KMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGE-- 486

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                +E  + +L    E     +++ YT+++
Sbjct: 487 --QEHWEGVEAMLSEMKEQGLVPNIITYTTLV 516



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 129/286 (45%), Gaps = 9/286 (3%)

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSM-GKAGRLDTSM--KVYMEMQGCGHRPSAPMYVSL 381
           ++L   ++E +F P    ++ L+ S+       D ++  ++  +++     P AP++  L
Sbjct: 175 LRLLSLLREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDL 234

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I ++A+A   D AL L    +  G  P     T +I +   +G++  A ++F +   AG 
Sbjct: 235 ISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGE 294

Query: 442 L-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           + P    Y+ LL+ +   G + +A ++ + M+  G+ P  +TY+ L+    +    + A 
Sbjct: 295 IKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESAR 354

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +L EM+  G          ++   +D G    A   LR M +SG+R +      + ++ 
Sbjct: 355 ILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTF 414

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQNER 604
            K      A        E   + D+V + +++ AH   C+  +++R
Sbjct: 415 GKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAH---CKGGRHDR 457



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/185 (18%), Positives = 78/185 (42%), Gaps = 3/185 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+S   PG   Y ++ ++L E   ++G+ ++  EM     +  +     Y  ++    ++
Sbjct: 466 RESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEM---KEQGLVPNIITYTTLVDVYGRS 522

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            + + +  C + +     K     Y+ L+  +  +GL   A  + ++M+     +     
Sbjct: 523 GRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVL 582

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I +  +  R+  A  + Q M+E   RP    + +L+ ++ +  + D    +Y EM  
Sbjct: 583 NSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMIT 642

Query: 369 CGHRP 373
            G  P
Sbjct: 643 SGCAP 647


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 169/366 (46%), Gaps = 5/366 (1%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           ++++   L++    D  +S+  W   +S + P   CY +L D     R  +   S++  +
Sbjct: 154 ILNVAVQLRLNRQWDPIISVCEWIVYRSSFRPDIICYNLLIDAYGRKRQLNKAESIYAAV 213

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           +       +     Y  +++    A  L  +     ++ +         YN  +   L  
Sbjct: 214 LEAQC---VPTEDTYALLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKA 270

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
               KA E+Y+ M+K  C  +  TY LMI    KS +  +A+K+F EM+    + +   +
Sbjct: 271 RCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTY 330

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +LV++  + G  + + +V+ +MQ  GH P    Y +L+E+Y++AG    A  ++  M+ 
Sbjct: 331 TALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQH 390

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G  P+   + ++++++ ++G    A + F  +++ G  PT  ++  LL  HA SG V  
Sbjct: 391 MGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGR 450

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM- 522
             ++   +  +GLRP      A+L   A+   +D   ++L  M   G S DV + +V + 
Sbjct: 451 CEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERLLAAMDLAG-SADVGSHNVAVN 509

Query: 523 VYIKDG 528
            Y + G
Sbjct: 510 AYARAG 515



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 176/358 (49%), Gaps = 12/358 (3%)

Query: 205 DVLNES------RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           D+LN +      R +D ++S+ + +V+ SS     +   YN +I    +  +L  +   +
Sbjct: 153 DILNVAVQLRLNRQWDPIISVCEWIVYRSSFRPDII--CYNLLIDAYGRKRQLNKAESIY 210

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             VL++ C     +Y +L+  + N    ++A  +   M++       + Y   +  L K+
Sbjct: 211 AAVLEAQCVPTEDTYALLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKA 270

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
                A++++Q MK+   R +   +  +++  GK+ +  ++MK++ EMQ  G + +   Y
Sbjct: 271 RCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTY 330

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +L+ ++A+ G  + A  ++++M+ AG  P+   +  ++E+++++G    A  IF+ M+ 
Sbjct: 331 TALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQH 390

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P  ++Y+ L++ +  +G    A   + S+   G+ P + ++  LL+  A+   V  
Sbjct: 391 MGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGR 450

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFM---GSSGIRTNNFIV 552
             +++ ++   G   D  A + ++  Y + G +D   R L  M   GS+ + ++N  V
Sbjct: 451 CEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERLLAAMDLAGSADVGSHNVAV 508


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 182/421 (43%), Gaps = 41/421 (9%)

Query: 208 NESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           N + D +   S+F+ M     + N +S    Y  +I  L +  +++     FKK+ + DC
Sbjct: 15  NLNNDVNSAFSVFNMMPKKGCRRNEVS----YTNLIHGLCEVGRVDEGINIFKKMREDDC 70

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
               ++Y V++      G   +A  ++  M +  C  +  TY +MI ++ K  +L+   +
Sbjct: 71  YPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRR 130

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG--------------CG-- 370
           +  EM E+   PS   + +L+D   K G ++ + ++   M                CG  
Sbjct: 131 ILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFC 190

Query: 371 -----HR--------------PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
                HR              PS   Y SLI    K G LD+A RL + M   G  P+  
Sbjct: 191 RKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQW 250

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +++ I++  K G+++ A  +F  ++  G       Y+ L++ +  +G++D A  L + M
Sbjct: 251 TYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRM 310

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSV 530
            +    P  STY AL+  L K + V  A  ++  M   G    V    +L+V  +K+G  
Sbjct: 311 LTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDF 370

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D+A R L  M SSG + + +I      +       + A+ ++    E     D + YT V
Sbjct: 371 DYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLV 430

Query: 591 L 591
           +
Sbjct: 431 I 431



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 189/433 (43%), Gaps = 5/433 (1%)

Query: 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV 224
            ++   L  +   D  +++F+  +    Y P    Y ++   L ES      ++LF EM 
Sbjct: 43  TNLIHGLCEVGRVDEGINIFKKMREDDCY-PTVRTYTVIVHALFESGRRMEAINLFSEMR 101

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
               +  I     Y  +I  + K  KLE       ++++        +YN L+  +  +G
Sbjct: 102 ERGCEPNIH---TYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEG 158

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           +   A EI + M    C+ +  TY  +I    +   +  A+ L  +M E    PS   + 
Sbjct: 159 MVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYN 218

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           SL+    K G LD++ ++   M   G  P    Y   I++  K G+++ A  L++ ++  
Sbjct: 219 SLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEK 278

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G + N  ++T +I+ + K+GK+D A S+   M     LP  STY+ L++      +V  A
Sbjct: 279 GIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEA 338

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMV 523
           + L  SM   GL+  + TYT L+  + K    D A +IL +M + GY  DV   +  +  
Sbjct: 339 LLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHA 398

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           +   G++  A   +  M   G+  +      + ++     L   A  +L+   ++     
Sbjct: 399 FCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPS 458

Query: 584 LVLYTSVLAHLVR 596
              Y+ ++ HL++
Sbjct: 459 HHTYSCLIKHLLK 471



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 154/332 (46%), Gaps = 1/332 (0%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C+ +  SY  L+      G   +   I++ M + +C     TY +++ +L +SGR   AI
Sbjct: 35  CRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAI 94

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            LF EM+ER   P+ + +  ++++M K  +L+   ++  EM   G  PS P Y +LI+ Y
Sbjct: 95  NLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGY 154

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K G ++ A  + D M      PN   +  +I    +   +  AM++ + M  +   P+ 
Sbjct: 155 CKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSV 214

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ L+      G +DSA +L N M   G+ P   TY+  +  L K+  ++ A  +   
Sbjct: 215 VTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNS 274

Query: 506 MKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           +K  G    +V  + ++  Y K G +D A   L  M +     N+     L +   K   
Sbjct: 275 LKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERK 334

Query: 565 YESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            + A  L+E+ ++   K  +  YT ++  +++
Sbjct: 335 VQEALLLMESMIQKGLKCTVPTYTILIVAMLK 366



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/493 (20%), Positives = 186/493 (37%), Gaps = 111/493 (22%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+    P    Y ++ + + +    +    + DEMV    K  +     YN +I    K 
Sbjct: 101 RERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVE---KGLVPSVPTYNALIDGYCKE 157

Query: 249 DKLEMSYCCFKKVLD----SDCKIDTQSYNVLMTLFLNKGLPYKAFEI------------ 292
             +E +    +++LD    + C  + ++YN L+  F  K   ++A  +            
Sbjct: 158 GMVEAA----QEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPS 213

Query: 293 ---YESMEKGECSL--------------------DGSTYELMIPSLAKSGRLDAAIKLFQ 329
              Y S+  G+C +                    D  TY + I +L K GR++ A  LF 
Sbjct: 214 VVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFN 273

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLD--TSMKVYMEMQGC------------------ 369
            +KE+  + +  I+ +L+D   KAG++D   S+   M  + C                  
Sbjct: 274 SLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKER 333

Query: 370 ---------------GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
                          G + + P Y  LI +  K G  D A R+ D+M  +G++P+  ++T
Sbjct: 334 KVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYT 393

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
             I +    G +  A  + + M   G +P   TY+ +++ +   G ++ A  +   M   
Sbjct: 394 AFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDT 453

Query: 475 GLRPGLSTYTALLTLLAKRKLV-----------------------------DVAAKILLE 505
           G  P   TY+ L+  L K +L                              + A ++  +
Sbjct: 454 GCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEK 513

Query: 506 MKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           M   G S +++    L++ + K G +  A +    M   G+  +  I   L   C +  +
Sbjct: 514 MLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGI 573

Query: 565 YESAKPLLETYVE 577
           Y  A  L+   +E
Sbjct: 574 YGDAVRLVGAMME 586



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 147/389 (37%), Gaps = 33/389 (8%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D   ++   D   SL D M+   +++ +   S YN +I  L K  K++ +    +
Sbjct: 287 YTALIDGYCKAGKMDDANSLLDRML---TEDCLPNSSTYNALIDGLCKERKVQEALLLME 343

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++    K    +Y +L+   L +G    A  I + M       D   Y   I +    G
Sbjct: 344 SMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRG 403

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            +  A  +   M ER   P    +  ++D+ G  G L+ +  V   M   G  PS   Y 
Sbjct: 404 NIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYS 463

Query: 380 SLIESYAKAG-----------------------------KLDTALRLWDEMRIAGFRPNF 410
            LI+   K                               K +TAL L+++M   G  PN 
Sbjct: 464 CLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNI 523

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +  +I    K G+L +A  +F  M   G  P+ + Y+ LL      G    A++L  +
Sbjct: 524 NTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGA 583

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS 529
           M   G  P L +   L   L +    + A  +   +   GY+ D  A  +L+   +K+G 
Sbjct: 584 MMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGL 643

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            D     L  M + G + +    R L E 
Sbjct: 644 SDGCSELLGVMEARGCQIHPQTYRMLIEG 672


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 187/450 (41%), Gaps = 18/450 (4%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE 209
           +LETQL  L   P     T+A+ + + +     L  WA               L D L  
Sbjct: 39  DLETQLRSLCQKPN-SQFTEAVSLFHSALDFNLLPSWATCN-----------FLVDALAR 86

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
           SR++    S++  M H    + +  F + + +I+  A A K ++ +     VL     ++
Sbjct: 87  SRNYGLAFSVYRRMTH---VDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVN 143

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
               N+++      G  ++A  +   M +   S D  +Y  +I  L K+ +L  A+ L  
Sbjct: 144 VFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLL 203

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EM+     P+     +L+D + K GR+D +M++   M+  G      +Y +LI  +   G
Sbjct: 204 EMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNG 263

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
            LD    L+DEM   G   N   ++ ++    + G+   A ++   M   G  P   TY+
Sbjct: 264 NLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYT 323

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L++     G+   AM L N M   G  P   TY  LL+ L K  LV  A KIL  M   
Sbjct: 324 GLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK 383

Query: 510 GYSVDVSASDVLMVYIKD-GSVDHALRWLR--FMGSSGIRTNNFIVRQLFESCMKNALYE 566
           G   DV   + LM  + D G VD AL+     F   + +  N F    L     K     
Sbjct: 384 GKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLT 443

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            A  +    V+  +  +LV Y  +L   ++
Sbjct: 444 KAVKIHRKMVKKGSCGNLVTYNMLLGGCLK 473



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 165/349 (47%), Gaps = 5/349 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++  L K   +  ++   + +++   K D  +YN LM    +KG   +A +++ SM
Sbjct: 356 TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM 415

Query: 297 EKGECSLDGS--TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
              E  L+ +  T+ ++I  L K GRL  A+K+ ++M ++    +   +  L+    KAG
Sbjct: 416 FDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAG 475

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++  +M+++ ++   G  P++  Y  LI+ + K   L+ A  L+ EMR  G  P    + 
Sbjct: 476 KIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYN 535

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++ S  K G L+ A S+F +M  A   P   +++ +++    +G      +L   M   
Sbjct: 536 TLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEM 595

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHA 533
           GLRP   T++ L+  L+K   +D A   L  M   G++ D    D L+  +   G     
Sbjct: 596 GLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEI 655

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE-SAKPLLETYVESAAK 581
           +  L  M + G   +  IV  +  +C+ +++ E     LL T+ +  ++
Sbjct: 656 INLLHQMAAKGTVLDRKIVSTIL-TCLCHSIQEVDVMELLPTFFQGTSE 703



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 158/362 (43%), Gaps = 3/362 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I        L+     F ++L      +  +Y+ L+      G   +A  +  +M 
Sbjct: 252 YGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMA 311

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D  TY  +I  L K GR   A+ L   M E+   PS   +  L+  + K G + 
Sbjct: 312 EHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVI 371

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM--RIAGFRPNFGLFTM 415
            + K+   M   G +     Y +L++     GK+D AL+L++ M        PN   F M
Sbjct: 372 DAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNM 431

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I    K G+L  A+ I   M + G      TY+ LL     +G++  AM+L+  +   G
Sbjct: 432 LIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLG 491

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHAL 534
             P   TY+ L+    K +++++A  +  EM+T G +  +   + LM  + K+GS++ A 
Sbjct: 492 FVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAK 551

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
              + MG++    +      + +  +K   ++  K L    VE   + D + +++++  L
Sbjct: 552 SLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRL 611

Query: 595 VR 596
            +
Sbjct: 612 SK 613



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 113/497 (22%), Positives = 203/497 (40%), Gaps = 19/497 (3%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +I  L KA KL+ +     ++  + C  ++ +   LM      G   +A E+ E+M
Sbjct: 181 SYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAM 240

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +K     D   Y  +I     +G LD   +LF EM  +    +   ++ LV  + + G+ 
Sbjct: 241 KKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQW 300

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  V   M   G  P    Y  LI+   K G+   A+ L + M   G  P+   + ++
Sbjct: 301 KEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVL 360

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM--TSA 474
           +    K G +  A  I   M   G      TY+ L++     G+VD A+KL+NSM     
Sbjct: 361 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 420

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHA 533
            L P + T+  L+  L K   +  A KI  +M   G   ++   ++L+   +K G +  A
Sbjct: 421 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 480

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           +   + +   G   N+F    L +   K  +   AK L            L  Y +++A 
Sbjct: 481 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMAS 540

Query: 594 LVRCQD---EQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREF-FHGIDYE 649
           L  C++   EQ +     + +A           +  G    K     FV+E     ++  
Sbjct: 541 L--CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDG--TLKAGDFQFVKELQMKMVEMG 596

Query: 650 LEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSV 709
           L   A  +  + L+N L  +G+++ A+   +    +   P A+V+D  +      + LS 
Sbjct: 597 LRPDALTF--STLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLL------KGLSS 648

Query: 710 GAALIAVMHTLHRFRKR 726
                 +++ LH+   +
Sbjct: 649 KGDTTEIINLLHQMAAK 665



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 154/388 (39%), Gaps = 23/388 (5%)

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A+ LF    + N  PS+     LVD++ ++     +  VY  M      PS     +LIE
Sbjct: 58  AVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIE 117

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            +A A K      +   +   GF  N  +  ++++   ++G +  AM +  +M R    P
Sbjct: 118 CFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSP 177

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              +Y+ L+     + ++  A+ L   M +AG  P   T T L+  L K   +D A ++L
Sbjct: 178 DIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELL 237

Query: 504 LEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
             MK  G+  DV     L+  +  +G++D        M   GI  N      L     + 
Sbjct: 238 EAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRL 297

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLC 622
             ++ A  +L    E     D+V YT ++  L  C+D +   H M +L+    K      
Sbjct: 298 GQWKEANTVLNAMAEHGIHPDVVTYTGLIDGL--CKDGR-ATHAMDLLNLMVEKGEE--- 351

Query: 623 GLFTGPEQRKQPVL-------SFVREFFHGIDYELEEGAARYFV--NVLLNYLVLMGQIN 673
                P      VL         V + F  +   +E+G     V  N L+  L   G+++
Sbjct: 352 -----PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVD 406

Query: 674 RARCVWKVAY--ENKLFPKAIVFDQHIA 699
            A  ++   +  EN L P    F+  I 
Sbjct: 407 EALKLFNSMFDNENCLEPNVFTFNMLIG 434


>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic [Vitis vinifera]
          Length = 701

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/509 (21%), Positives = 229/509 (44%), Gaps = 48/509 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K   L+ +   F ++L+   K D  +++ +++      LP KA E +E M 
Sbjct: 179 YNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMP 238

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  D  TY  MI +  ++G +D A+KL+   +   +R     F++L+   G +G  D
Sbjct: 239 EFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFD 298

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + VY EM+  G +P+  +Y +L+++  +A +   A  ++ EM   G +P++G +  ++
Sbjct: 299 GCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALL 358

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-L 476
            ++ ++   + A+ ++ +M+  G   +   Y+ LL M A  G  + A  ++  M S+G  
Sbjct: 359 RAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNC 418

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P   T+++L+T+ +    V  A  +L  M   G+  ++   + ++  Y K    D  +R
Sbjct: 419 MPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVR 478

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +    I  ++      F  CM N + +S K                     L  L+
Sbjct: 479 TFDRLLELDITPDD-----RFCGCMLNVMTQSPK-------------------EELGKLI 514

Query: 596 RCQDEQNER--HLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEG 653
            C D+ N +  +++ +L   ++    F          RK+       E F  I  ++++ 
Sbjct: 515 DCIDKANPKLGNVVKLLLEEQNGEGTF----------RKE-----ASELFDSISADVKKA 559

Query: 654 AARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
               + N L++  V +  + +A  ++ +    +++   I       WSL +++LS+GAAL
Sbjct: 560 ----YCNCLIDLCVNLNLLEKACELFDLGLTLEIYID-IQSKSPTQWSLHLKSLSLGAAL 614

Query: 714 IAVMHTLHRFRKRMLYYGVVPRRIKLVTG 742
            A+   ++   K +     +P  + + TG
Sbjct: 615 TALHIWMNDLSKAVEVGEELPAVLGINTG 643



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 118/282 (41%), Gaps = 40/282 (14%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L L+  A+ + W +     +  L  +   S +FDG L++++EM     K  + +   
Sbjct: 263 DMALKLYDRARTEKWRI-DPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVI--- 318

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++  + +A +                                   P++A  IY+ M 
Sbjct: 319 YNTLLDAMGRAKR-----------------------------------PWQAKNIYKEMT 343

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                    TY  ++ +  ++   + A+ +++EMKE+    S  ++ +L+      G  +
Sbjct: 344 NNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTE 403

Query: 358 TSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            +  ++ +M+  G+  P +  + SLI  Y+ +GK+  A  + + M  AGF PN  + T +
Sbjct: 404 EAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSL 463

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           I+ + K+ + D  +  F  +      P      C+L +   S
Sbjct: 464 IQCYGKANRTDEVVRTFDRLLELDITPDDRFCGCMLNVMTQS 505



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y   ++ + K   LD A +L+DEM   G +P+   F+ II     S   + A+  F  M
Sbjct: 178 LYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKM 237

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   TYS +++ +  +G VD A+KLY+   +   R    T++ L+ +       
Sbjct: 238 PEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNF 297

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD-HALRWLRFMGSSGIRTNNFIVRQL 555
           D    +  EMK +G   ++   + L+  +        A    + M ++G++ +      L
Sbjct: 298 DGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAAL 357

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
             +  +    E A  + +   E   ++ +VLY ++LA
Sbjct: 358 LRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLA 394


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 139/280 (49%), Gaps = 4/280 (1%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
             ++N ++  L K+ ++EM+Y  FK V     + D  SYNV++  +       KA E+ +
Sbjct: 171 LQSFNTILDVLCKSKRVEMAYNLFK-VFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLK 229

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M K   + + ++Y  M+    ++G+++ A   F EMK+R+       + +++   G AG
Sbjct: 230 EMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAG 289

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            +  + KV+  M   G  PS   Y + I+   K   +D A+ +++EM + G+ PN   + 
Sbjct: 290 EIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYN 349

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I      G+++ AM     M+  G  P   TY+ ++      G++D A+ L+  MTS 
Sbjct: 350 LVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSG 409

Query: 475 GLRPGLSTYTALLTLLAKRKLVD---VAAKILLEMKTMGY 511
              P L TY  L++ +  RK  D   VA  +L+EM   G+
Sbjct: 410 DCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGF 449



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 148/308 (48%), Gaps = 6/308 (1%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           +++ ++   + + G P++A +++ SM +  C  D  ++  ++  L KS R++ A  LF+ 
Sbjct: 137 KTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKV 196

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
            K + FR     +  +V+      R + ++++  EM   G  P+   Y ++++ Y +AG+
Sbjct: 197 FKGK-FRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQ 255

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           ++ A   + EM+      +   +T +I     +G++  A  +F  M + G LP+ +TY+ 
Sbjct: 256 INEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNA 315

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            +++      VD+A+ ++  M   G  P   TY  ++  L  R  ++ A + +  MK  G
Sbjct: 316 FIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDG 375

Query: 511 YSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSS----GIRTNNFIVRQLFESCMKNALY 565
              +V   ++++ Y  D G +D AL   + M S      + T N ++  +F     + L 
Sbjct: 376 CEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLL 435

Query: 566 ESAKPLLE 573
            +   L+E
Sbjct: 436 VAGNLLIE 443



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 117/236 (49%), Gaps = 4/236 (1%)

Query: 222 EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           EM+ +  K G++   ++YN +++   +A ++  ++  F ++   DC+ID  +Y  ++  F
Sbjct: 226 EMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGF 285

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   +A +++++M K       +TY   I  L K   +D AI +F+EM  + + P+ 
Sbjct: 286 GVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNS 345

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             +  ++  +   G ++ +M+    M+  G  P+   Y  +I  +   G++D AL L+ +
Sbjct: 346 ITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQK 405

Query: 401 MRIAGFRPNFGLFTMIIES---HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           M      PN   + ++I +     KS  L +A ++  +M   GF+P   T++ +L 
Sbjct: 406 MTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNRVLN 461



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 112/266 (42%), Gaps = 39/266 (14%)

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ--GCGH------------- 371
           L   M+     P+   FA + +    AG+   ++KV++ M   GC               
Sbjct: 123 LVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLC 182

Query: 372 -------------------RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
                              R     Y  ++  +    + + AL +  EM   G  PN   
Sbjct: 183 KSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTS 242

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  +++ + ++G+++ A   F +M++        TY+ ++     +G++  A K++++M 
Sbjct: 243 YNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMV 302

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVD 531
             G+ P ++TY A + +L K+  VD A  I  EM   GY  + ++ + V+      G ++
Sbjct: 303 KKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEME 362

Query: 532 HALRWLRFMGSSG----IRTNNFIVR 553
            A+ ++  M   G    ++T N ++R
Sbjct: 363 RAMEFMGRMKDDGCEPNVQTYNLVIR 388



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 99/220 (45%), Gaps = 7/220 (3%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   +  + E YA AGK   A++++  M   G   +   F  I++   KS ++++A ++
Sbjct: 134 PTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNL 193

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  + +  F     +Y+ ++       + + A+++   M   GL P L++Y  +L    +
Sbjct: 194 F-KVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFR 252

Query: 493 RKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGI-----R 546
              ++ A    LEMK     +DV + + V+  +   G +  A +    M   G+      
Sbjct: 253 AGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVAT 312

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
            N FI     +  + NA+    + +++ YV ++   +LV+
Sbjct: 313 YNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVI 352



 Score = 46.6 bits (109), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 72/161 (44%)

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           S+   M  A   PTP T++ + E +AS+G+   A+K++ SM   G    L ++  +L +L
Sbjct: 122 SLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVL 181

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
            K K V++A  +    K    +  VS + ++  +      + AL  L+ M   G+  N  
Sbjct: 182 CKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLT 241

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               + +   +      A        +   ++D++ YT+V+
Sbjct: 242 SYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVI 282


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 169/371 (45%), Gaps = 5/371 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           ND   +   F W   Q  Y    + Y ++ D+L + + FD M  L ++MV      G+  
Sbjct: 203 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVE---VGGLMS 259

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
                +V++ LA A +   +   F K+       DT++ NVL+     +    +A  +++
Sbjct: 260 LMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQ 319

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            + +G    D +++  ++    K+  L  A+   +EMK+  F PS   + SLV++     
Sbjct: 320 EL-RGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEK 378

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
              T   +  EM+     P+   Y  L+ +  KAG+   AL  +D+++  G  P+   + 
Sbjct: 379 DFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYN 438

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    ++G+L+ A S+  +M   G  P  +T++ L+       Q ++A+KL   M   
Sbjct: 439 SLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQ 498

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
              P + TYT LL L  KR+ V +   ++  M     S D S   +L+ ++ ++G V  +
Sbjct: 499 SCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQS 558

Query: 534 LRWLRFMGSSG 544
             +L  M S G
Sbjct: 559 CLFLEEMVSKG 569


>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 862

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 132/578 (22%), Positives = 237/578 (41%), Gaps = 24/578 (4%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD +L LF EM HD S       + YN ++   A     + +    + +L++    DT S
Sbjct: 223 FDMLLGLFAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTAS 282

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y  ++  F   G   +  E++  M     + D S Y  ++ +  + G    A+ + ++M+
Sbjct: 283 YRHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQ 342

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P+   +  L+D  G+ GR D   +++ EM+     P    Y  L   +   G   
Sbjct: 343 ADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMR-TAVPPDTATYNVLFSVFGDGGFFK 401

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             + L+ +M   G  P+      ++ +  + G  + A  +   + + G +PT   Y+ L+
Sbjct: 402 EVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLV 461

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGY 511
           E    +   + A   +N MT  G  P + TY +L  + AK  L   A  I   M  + G 
Sbjct: 462 EALGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGI 521

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
             +  + D L+  Y +   +D A++    M  S    +   +  +  + C+   + ES K
Sbjct: 522 QKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDES-K 580

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL-----SATKHKAHAFLCGL 624
              E    + A   ++ Y  +L+   R     +   L+  +     S+T     + + G 
Sbjct: 581 EQFEEIQSNMAVPSIIAYCMMLSLYARNDRWADAYDLLEEMKTNRASSTHQVIASMIQGE 640

Query: 625 FTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYE 684
           +      +    +       G DY L       F N LL+ L   GQ  RA  V   A  
Sbjct: 641 YDDSSNWQMVEYALDSSNLEGCDYSLR------FFNALLDVLWWFGQKARAARVLDHAVN 694

Query: 685 NKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPT 744
           + LFP+ +  D  + WSLDV  +SVG AL+AV   L++   R+     +P+   +V    
Sbjct: 695 SGLFPE-LSRDTKLVWSLDVHRMSVGGALVAVSVWLNKLYARLKGEKDLPQLASVV---- 749

Query: 745 LKIVIAQM-LSSVESPFEVSKVVLRAPGDSVMEWFKKP 781
             ++  +M  S++     ++KVV     D++   F  P
Sbjct: 750 --VLRGKMEKSTITRGLPIAKVVYSFLNDTLSSSFHYP 785



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 134/318 (42%), Gaps = 13/318 (4%)

Query: 266 CKIDTQSYNVLMTLFLNKG--LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
           C+ D   + +++ +   +G  L  K  E++  +     S    +Y  +I + A++   + 
Sbjct: 129 CRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAD--SRTALSYTSLIAAYARNALHEE 186

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGR----LDTSMKVYMEMQ---GCGHRPSAP 376
           A  L  +MK     P+   + +++ +  +A       D  + ++ EM+       RP   
Sbjct: 187 ARALLDQMKAAGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDVSPAVRPDLT 246

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +L+ + A     D A  L   M  AG  P+   +  I+++ A++G L     +F +M
Sbjct: 247 TYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVDAFARAGDLSRVAELFREM 306

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P PS Y  L+E H   G    A+ +   M + G  P  +TY  LL L  ++   
Sbjct: 307 ADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRF 366

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRTNNFIVRQL 555
           D   ++  EM+T     D +  +VL     DG      +     M  +GI  +      +
Sbjct: 367 DGVRELFREMRT-AVPPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGV 425

Query: 556 FESCMKNALYESAKPLLE 573
             +C +  L+E A+ +L+
Sbjct: 426 LVACGQGGLHEDAREVLD 443


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 160/342 (46%), Gaps = 3/342 (0%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           SLF  M+ D  +  +  ++    +  YL +  KL+ +    + + +S  K D   YN L+
Sbjct: 3   SLFYRMMKDGCEATVVTYTVI--IHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLV 60

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
              +N G    A +I + M++ + S +  TY  +I   A +GRL    KLFQEMK++   
Sbjct: 61  NGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGES 120

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P+   + +L+   G+ G    ++++Y EM G G       Y   I  Y K G L+   RL
Sbjct: 121 PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERL 180

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
            DEM   G  P+   +  +++ +AK      A  I  +M  AG+ P   TY+ +L     
Sbjct: 181 LDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARK 240

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVS 516
              V  A +L+ ++ S G+ P + TY+A+L+L  +  L   AAK+  EM   G     ++
Sbjct: 241 EQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIA 300

Query: 517 ASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            S ++  Y   G    AL   + M  SGI  +  I   L ++
Sbjct: 301 YSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDA 342



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 150/338 (44%), Gaps = 6/338 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFS 236
           D +L L    K +S   P +  Y  L + L  S   +    + D+M  D  S N ++   
Sbjct: 35  DHALRLLEVMK-ESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQDKVSANLVT--- 90

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I+  A A +L+     F+++ D     ++ +YN L+  +  KGL  +A E+Y+ M
Sbjct: 91  -YTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEM 149

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +   C+ D  TY + I    K G L+   +L  EM  +   P    + +L+D   K    
Sbjct: 150 DGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYF 209

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++  EM   G+RP+   Y  ++ S  K   +  A +L++ ++  G  PN   ++ +
Sbjct: 210 VKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAM 269

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  + + G    A  ++ +M  AG +P    YS L+E +   G    A+  +  M  +G+
Sbjct: 270 LSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGI 329

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
            P    YTAL+    K      A  +  EM   G+  D
Sbjct: 330 VPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPD 367



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 17/256 (6%)

Query: 213 FDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCK- 267
           F   L L+DEM      +G+        YN  I    K   LE      +++LD  D K 
Sbjct: 139 FKEALELYDEM------DGVGCAKDVHTYNIAIAMYGKRGLLED----MERLLDEMDTKG 188

Query: 268 --IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
              D  +YN L+ ++  K    KA EI   M +     +  TY +M+ S  K   +  A 
Sbjct: 189 VPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEAT 248

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +LF+ +K +   P+   +++++   G+ G    + K++ EM   G  P    Y  LIESY
Sbjct: 249 QLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESY 308

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
              G    AL  + +MR +G  P+  ++T +++++ K+G+   A  ++ +M + GF+P  
Sbjct: 309 GHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDG 368

Query: 446 STYSCLLEMHASSGQV 461
            TY  L+   A++G++
Sbjct: 369 ITYGILVRAFANAGRL 384


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 165/357 (46%), Gaps = 3/357 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  VI    K   L+ +Y  + ++LD     +  +Y+ ++          KA E+  SM
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     +  TY  ++     SG+   AI   ++M      P    + SL+D + K GR 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + K++  M   G +P    Y +L++ YA  G L     L D M   G  PN  +F+++
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++AK GK+D AM +F+ M + G  P   TY  ++ +   SG+V+ AM+ +  M    L
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            PG   Y +L+  L      D A +++LEM   G  +D +  + ++  + K+G V  + +
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEK 500

Query: 536 WLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               M   G++ +      L +  C+   + E+ K LL + V    K D V Y +++
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK-LLASMVSVGMKPDCVTYNTLI 556



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 153/329 (46%), Gaps = 3/329 (0%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESM--EKGECSLDGSTYELMIPSLAKSGRLDA 323
           C  +  SYN+L+    +     +A E+ + M  + G+C  D  +Y  +I    K G LD 
Sbjct: 158 CIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A   + EM +R   P+   ++S++ ++ KA  +D +M+V   M   G  P+   Y S++ 
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVH 277

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            Y  +G+   A+    +M   G  P+   +  +++   K+G+   A  +F  M + G  P
Sbjct: 278 GYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKP 337

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
             +TY  LL+ +A+ G +     L + M   G+ P    ++ L+   AK+  VD A  + 
Sbjct: 338 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVF 397

Query: 504 LEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            +M+  G + D V+   V+ +  K G V+ A+R+   M    +   N +   L  S    
Sbjct: 398 SKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVL 591
             ++ AK L+   ++    +D + + S++
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSII 486



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 177/382 (46%), Gaps = 11/382 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++ YL K  +   +   F  +     K +  +Y  L+  +  KG   +   + + M
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     +   + ++I + AK G++D A+ +F +M+++   P    + +++  + K+GR+
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +M+ + +M      P   +Y SLI S     K D A  L  EM   G   +   F  I
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+SH K G++  +  +F  M R G  P   TYS L++ +  +G++D A KL  SM S G+
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
           +P   TY  L+    K   ++ A  +  EM++ G S D+   ++++  +       A + 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 537 LRFMG--SSG----IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           L ++G   SG    + T N I+  L     KN L + A  + +    +  +++   +  +
Sbjct: 606 L-YVGITESGTQLELSTYNIILHGL----CKNNLTDEALRMFQNLCLTDLQLETRTFNIM 660

Query: 591 LAHLVRCQDEQNERHLMAILSA 612
           +  L++       + L A LSA
Sbjct: 661 IGALLKVGRNDEAKDLFAALSA 682



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 146/327 (44%), Gaps = 7/327 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYES 295
            Y  VI  L K+ ++E +   F++++D         YN L+          KA E I E 
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +++G C LD   +  +I S  K GR+  + KLF  M     +P    +++L+D    AG+
Sbjct: 471 LDRGIC-LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D + K+   M   G +P    Y +LI  Y K  +++ AL L+ EM  +G  P+   + +
Sbjct: 530 MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I++   ++ +   A  ++  +  +G     STY+ +L     +   D A++++ ++    
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHAL 534
           L+    T+  ++  L K    D A  +   +   G   DV    ++    I+ G ++   
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 709

Query: 535 RWLRFMGSSGIRTN----NFIVRQLFE 557
                M  +G   N    N IVR+L +
Sbjct: 710 DLFLSMEENGCTANSRMLNSIVRKLLQ 736



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 147/384 (38%), Gaps = 38/384 (9%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    Y  +  +L +S   +  +  F++M+ +    G  +   YN +I  L   
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV---YNSLIHSLCIF 457

Query: 249 DK-----------LEMSYCC----FKKVLDSDCK--------------------IDTQSY 273
           DK           L+   C     F  ++DS CK                     D  +Y
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 517

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + L+  +   G   +A ++  SM       D  TY  +I    K  R++ A+ LF+EM+ 
Sbjct: 518 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES 577

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    +  ++  + +  R   + ++Y+ +   G +     Y  ++    K    D 
Sbjct: 578 SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDE 637

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           ALR++  + +   +     F ++I +  K G+ D A  +F  +   G +P   TYS + E
Sbjct: 638 ALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G ++    L+ SM   G         +++  L +R  +  A   L  +    +S+
Sbjct: 698 NLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSL 757

Query: 514 DVSASDVLMVYIKDGSVDHALRWL 537
           + S + + +  +  G      R+L
Sbjct: 758 EASTASLFLDLLSGGKYQEYHRFL 781



 Score = 42.4 bits (98), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 125/334 (37%), Gaps = 12/334 (3%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y  L+ S   AG+LD        +   GF  +   FT +++      +   AM I
Sbjct: 89  PNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDI 148

Query: 433 -FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LRPGLSTYTALLTL 489
               M + G +P   +Y+ LL+      +   A++L   M   G    P + +YT ++  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
             K   +D A     EM   G   +V + S ++    K  ++D A+  L  M  +G+  N
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
                 +      +   + A   L+       + D+V Y S++ +L +       R +  
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 609 ILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHG-IDYELEEG--AARYFVNVLLNY 665
            ++    K      G        K  ++       HG +D  +  G     Y  ++L+  
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVE-----MHGLLDLMVRNGIHPNHYVFSILICA 383

Query: 666 LVLMGQINRARCVWKVAYENKLFPKAIVFDQHIA 699
               G++++A  V+    +  L P  + +   I 
Sbjct: 384 YAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 152/332 (45%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  +     VP D C  +L + L + + F  +   + E++       +  F   N
Sbjct: 85  AIECFRLTREHKLRVPFDTCRKVL-EHLMKLKYFKLVWGFYKEILECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F++  +M   
Sbjct: 141 ILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  +++ A  LF EM ++   P+   F +L+D   K G++D++
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M+ Y +M      P    Y +LI    K G L  A  L DEMR+ G +P+   +T +I+ 
Sbjct: 261 METYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G LD A  +   M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
             TYT ++    K++ V  AAK+L EM+  G+
Sbjct: 381 NGTYTMIINEFCKKEDVKTAAKLLKEMQRQGH 412



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 1/348 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+  +L  G    A E +    + +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   + +L+  Y + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   +L + M  +G +P+   ++++I    K  K++ A  +F +M   G +P   T+
Sbjct: 185 GDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VDSAM+ Y  M S    P L TY  L+  L K+  +  A  +L EM+ 
Sbjct: 245 TTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A      M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           A+ +L   +    K D   YT ++    + +D +    L+  +    H
Sbjct: 365 AEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGH 412



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 144/311 (46%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  +K++L+         +N+LM  F  +G  + A  +++
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           S+ K        ++  ++    + G LD   KL   M     +P    ++ L++ + K  
Sbjct: 161 SITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKES 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           +++ +  ++ EM   G  P+   + +LI+ + K GK+D+A+  + +M    F P+   + 
Sbjct: 221 KMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++ +   G +DSA +L  +M   
Sbjct: 281 TLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   D     +++  + K   V  A
Sbjct: 341 SIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTA 400

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 401 AKLLKEMQRQG 411



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 135/303 (44%), Gaps = 3/303 (0%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG +  AI+ F+  +E   R  F+    +++ + K     
Sbjct: 59  KGTQRSDIYVFSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G++  A  ++D +   G RP+   F  ++
Sbjct: 119 LVWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    +   M  +G  P   TYS L+       +++ A  L+N M   GL 
Sbjct: 179 NGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD A +   +M +  +  D+   + L+  + K G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M   G++ +      L +   K    +SA  L ET V+ + ++D V YT++++ L  
Sbjct: 299 LDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGL-- 356

Query: 597 CQD 599
           CQ+
Sbjct: 357 CQE 359



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 97/214 (45%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y+VL+     +    +A +++  M       +G T+  +I    K+G++D+A++ +
Sbjct: 205 DVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETY 264

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           ++M  + F P    + +L+  + K G L  +  +  EM+  G +P    Y +LI+   K 
Sbjct: 265 KQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKE 324

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD+A  L + M     R +   +T +I    + G+   A  +  +M   G  P   TY
Sbjct: 325 GDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTY 384

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           + ++        V +A KL   M   G  P + T
Sbjct: 385 TMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/459 (21%), Positives = 200/459 (43%), Gaps = 11/459 (2%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           +V++   L++    +  +++  W  R+S + P   CY +L D   + R      + +  +
Sbjct: 139 IVNVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMAL 198

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           +       +     Y  +++    + +L  +     ++  +        YN  +   L  
Sbjct: 199 LEARC---VPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKA 255

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
               KA E+Y+ M+K  C  +  TY LMI    K+ +  +++++F+EMK    +P+   +
Sbjct: 256 RCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTY 315

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +LV++  + G  + + +V+ EMQ  GH P    Y +L+E+Y++AG    A  ++  M  
Sbjct: 316 TALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEH 375

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G  P+   + +++++  ++G    A + F ++++ G  PT  ++  LL  HA SG V  
Sbjct: 376 MGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVAR 435

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGYSV---DVSASD 519
             ++   +  +GLRP      A+L    +   +D   ++   M +  G S    D S  +
Sbjct: 436 CEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYN 495

Query: 520 VLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
           VL+  Y + G +D      R + + G+  +         +  +   Y     + E  V++
Sbjct: 496 VLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDA 555

Query: 579 AAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA 617
               D      +LA    C DE+    + AI+ +    A
Sbjct: 556 GCYPDAGTAKVLLAA---CSDERQVEQVTAIVRSMHKDA 591


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 193/416 (46%), Gaps = 33/416 (7%)

Query: 128 PFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDT-SLSLFRW 186
           P +  S  AK+V  +   +  P++ + LD L        + + LK ++++   +L+ FRW
Sbjct: 91  PPVGMSEAAKMVCRIVSTQPEPKIASTLDALGVAVSPELVAEVLKNLSNAGMLALAFFRW 150

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM------VHDSSK----------- 229
           A+RQ  +    E +  L + L + + F  + SL + M        D+ K           
Sbjct: 151 AERQEGFSYTAEGFHNLIEALGKIKQFRLVWSLVETMRCRGLLSKDTFKLIVRRYARARK 210

Query: 230 --------NGISLF------SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI-DTQSYN 274
                     +S+F      S YN +I  L+K+ +++ +   +K++      + D ++Y 
Sbjct: 211 VKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYT 270

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           VLM  + ++        +Y+ M       D   Y ++I +  KSG+ D AIK+F EM+  
Sbjct: 271 VLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEAS 330

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
              PS +++  L++ +G   RLD ++K +   +  G     P   +++ +Y +A K   A
Sbjct: 331 GCMPSPHVYCMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHA 390

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            ++ DEMR     PN   + +I+    KS K + A +IF  M   G  P  +TY+ ++ M
Sbjct: 391 FKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGM 450

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             S+G+VD A+K++  M   G+ P +  ++AL+  L     ++ A     EM   G
Sbjct: 451 FCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKG 506



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 139/310 (44%), Gaps = 2/310 (0%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D L++S+      +++ EM        +     Y  +++       L M    ++
Sbjct: 233 YNWLIDTLSKSKQVKKAQAIYKEMKRKG--KFVPDLKTYTVLMEGWGHEKDLLMVKTMYQ 290

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++D+  + D  +Y +L++ F   G   +A +++  ME   C      Y ++I  L    
Sbjct: 291 EMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEE 350

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           RLD A+K F+  K+  F        ++V +  +A +   + K+  EM+ C   P++  Y 
Sbjct: 351 RLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSRTYD 410

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            ++    K+ K + A  ++  M I G  P    +TM++     +G++D+A+ ++  M   
Sbjct: 411 VILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVWKQMGEK 470

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G LP    +S L+       +++ A   +  M   G+RP    ++ L   L +   + +A
Sbjct: 471 GVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVQGGRISLA 530

Query: 500 AKILLEMKTM 509
            ++ L++  +
Sbjct: 531 QEVALKLDAI 540



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 117/244 (47%), Gaps = 2/244 (0%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           L   T++L++   A++ ++  A++ F++M     +   + +  L+D++ K+ ++  +  +
Sbjct: 193 LSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAI 252

Query: 363 YMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           Y EM+  G   P    Y  L+E +     L     ++ EM  AG RP+   + M+I +  
Sbjct: 253 YKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFC 312

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           KSGK D A+ +F +ME +G +P+P  Y  L+    S  ++D A+K +     +G    + 
Sbjct: 313 KSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEHYKKSGFPMEVP 372

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY-IKDGSVDHALRWLRFM 540
           T  A++    +      A K++ EM+      +    DV++ Y IK    + A    + M
Sbjct: 373 TCNAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRM 432

Query: 541 GSSG 544
           G  G
Sbjct: 433 GIDG 436



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 4/266 (1%)

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           S  + A ++ ++  AG L  +   + E Q  G   +A  + +LIE+  K  +      L 
Sbjct: 126 SPELVAEVLKNLSNAGMLALAFFRWAERQE-GFSYTAEGFHNLIEALGKIKQFRLVWSLV 184

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           + MR  G       F +I+  +A++ K+  A+  F  M   G     S Y+ L++  + S
Sbjct: 185 ETMRCRGLLSK-DTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKS 243

Query: 459 GQVDSAMKLYNSMTSAG-LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            QV  A  +Y  M   G   P L TYT L+      K + +   +  EM   G   DV A
Sbjct: 244 KQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVA 303

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
             +L+  + K G  D A++    M +SG   +  +   L          + A    E Y 
Sbjct: 304 YGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEHYK 363

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +S   +++    +V+    R    Q+
Sbjct: 364 KSGFPMEVPTCNAVVGAYCRASKFQH 389



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 94/203 (46%), Gaps = 18/203 (8%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM----VHDSSKNGIS 233
           D +L  F   K+  + +    C  ++      S+ F     + DEM    V  +S+    
Sbjct: 353 DEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASK-FQHAFKMVDEMRKCKVGPNSRT--- 408

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
               Y+ ++ YL K+ K E +Y  F+++    C+    +Y +++ +F + G    A +++
Sbjct: 409 ----YDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVW 464

Query: 294 ESM-EKG--ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           + M EKG   C      +  +I  L    RL+ A   FQEM ++  RP   +F++L +++
Sbjct: 465 KQMGEKGVLPCM---HMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEAL 521

Query: 351 GKAGRLDTSMKVYMEMQGCGHRP 373
            + GR+  + +V +++      P
Sbjct: 522 VQGGRISLAQEVALKLDAIRKTP 544



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 3/163 (1%)

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           K+   +   G   S  +   ++++ + AG L  A   W E R  GF      F  +IE+ 
Sbjct: 113 KIASTLDALGVAVSPELVAEVLKNLSNAGMLALAFFRWAE-RQEGFSYTAEGFHNLIEAL 171

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K  +  +  S+   M   G L +  T+  ++  +A + +V  A++ +  M+  GL+  L
Sbjct: 172 GKIKQFRLVWSLVETMRCRGLL-SKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTEL 230

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLM 522
           S Y  L+  L+K K V  A  I  EMK  G  V D+    VLM
Sbjct: 231 SDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLM 273


>gi|297804554|ref|XP_002870161.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315997|gb|EFH46420.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 702

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/496 (21%), Positives = 220/496 (44%), Gaps = 43/496 (8%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K+  LE S   F ++L+   K D  ++  +++     G+P +A E +E M 
Sbjct: 178 YNVTLKVFRKSKNLEKSEKLFDEMLERGVKPDNATFTTIISCARQSGVPKRAVEWFEKMS 237

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  D  T   MI +  ++G ++ A+ L+   +   +R     F++L+   G +G  D
Sbjct: 238 SFGCEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYD 297

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + +Y EM+  G +P+  +Y  L++S  +A +   A  +  ++   GF PN+  +  +I
Sbjct: 298 GCLNIYEEMKALGVKPNLVIYNRLLDSMGRAKRPWQAKIIHKDLISNGFTPNWSTYAALI 357

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GL 476
            ++ ++   D A+ I+ +M+  G   T   Y+ LL M A  G VD A +++  M +    
Sbjct: 358 RAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETC 417

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P   T+++L+T+ +    V  A   LL+M+  G+   +   + V+  Y K   VD  +R
Sbjct: 418 DPDSWTFSSLITVYSCSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVR 477

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   GI  ++      F  C+ N + ++                    +  +  L+
Sbjct: 478 TFDQVLELGITPDD-----RFCGCLLNVMTQTP-------------------SEEIGKLI 513

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
            C ++   +++  +              +    +  ++ V  F +E    ID  +     
Sbjct: 514 GCVEKAKPQNIGQV-------------KMLVEEQNGEEGV--FKKETSELID-SIGSDVK 557

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
           + ++N L++  V + ++ RA  + ++  E  ++   +       WSL +++LS+GAAL A
Sbjct: 558 KAYLNCLIDLCVNLNKLERACEILQLGLEYDIY-TGLQSKSATQWSLHLKSLSLGAALTA 616

Query: 716 VMHTLHRFRKRMLYYG 731
           +   ++   +  L  G
Sbjct: 617 LHVWINDLSEAALESG 632



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 144/316 (45%), Gaps = 4/316 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +   V  +S++ +    LFDEM+    K   + F+    +I    ++   + +   F+
Sbjct: 178 YNVTLKVFRKSKNLEKSEKLFDEMLERGVKPDNATFTT---IISCARQSGVPKRAVEWFE 234

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+    C+ D  +   ++  +   G    A  +Y+     +  +D  T+  +I     SG
Sbjct: 235 KMSSFGCEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSG 294

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D  + +++EMK    +P+  I+  L+DSMG+A R   +  ++ ++   G  P+   Y 
Sbjct: 295 NYDGCLNIYEEMKALGVKPNLVIYNRLLDSMGRAKRPWQAKIIHKDLISNGFTPNWSTYA 354

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI +Y +A   D AL ++ EM+  G      L+  ++   A  G +D A  IF DM+  
Sbjct: 355 ALIRAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNC 414

Query: 440 GFL-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
               P   T+S L+ +++ SG+V  A      M  AG  P L   T+++    K K VD 
Sbjct: 415 ETCDPDSWTFSSLITVYSCSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDD 474

Query: 499 AAKILLEMKTMGYSVD 514
             +   ++  +G + D
Sbjct: 475 VVRTFDQVLELGITPD 490



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 124/278 (44%), Gaps = 40/278 (14%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           + +LSL+  A+ + W +     +  L  +   S ++DG L++++EM     K  + +   
Sbjct: 262 EMALSLYDRARTEKWRIDA-VTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVI--- 317

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YNR++  + +A +                                   P++A  I++ + 
Sbjct: 318 YNRLLDSMGRAKR-----------------------------------PWQAKIIHKDLI 342

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + + STY  +I +  ++   D A+ +++EMKE+    +  ++ +L+      G +D
Sbjct: 343 SNGFTPNWSTYAALIRAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCADIGYVD 402

Query: 358 TSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            + +++ +M+ C    P +  + SLI  Y+ +G++  A     +MR AGF P   + T +
Sbjct: 403 EAFEIFQDMKNCETCDPDSWTFSSLITVYSCSGRVSEAEAALLQMREAGFEPTLFVLTSV 462

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           I+ + K+ ++D  +  F  +   G  P      CLL +
Sbjct: 463 IQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNV 500



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%)

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y   ++ + K+  L+ + +L+DEM   G +P+   FT II    +SG    A+  F  M
Sbjct: 177 LYNVTLKVFRKSKNLEKSEKLFDEMLERGVKPDNATFTTIISCARQSGVPKRAVEWFEKM 236

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   T + +++ +  +G V+ A+ LY+   +   R    T++ L+ +       
Sbjct: 237 SSFGCEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 296

Query: 497 DVAAKILLEMKTMG 510
           D    I  EMK +G
Sbjct: 297 DGCLNIYEEMKALG 310


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/444 (23%), Positives = 201/444 (45%), Gaps = 44/444 (9%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           +VPG  C+  L   +  S  F+   S F+E   + SK  + ++S +  +I+   +A ++E
Sbjct: 125 FVPGSNCFNYLLTFVVGSSSFNQWWSFFNE---NKSKVVLDVYS-FGILIKGCCEAGEIE 180

Query: 253 MSY---------------CCFKKVLDSDCK--------------------IDTQSYNVLM 277
            S+                 +  ++D  CK                     + ++Y VL+
Sbjct: 181 KSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI 240

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                 G+  + FE+YE M++     +  TY  ++  L K GR   A ++F EM+ER   
Sbjct: 241 NGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVS 300

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
            +   + +L+  + +  +L+ + KV  +M+  G  P+   Y +LI+ +   GKL  AL L
Sbjct: 301 CNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSL 360

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
             +++  G  P+   + +++    + G    A  +  +ME  G  P+  TY+ L++  A 
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVS 516
           S  ++ A++L  SM   GL P + TY+ L+     +  ++ A+++   M        +V 
Sbjct: 421 SDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVI 480

Query: 517 ASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            + +++ Y K+GS   AL+ L+ M    +  N    R + E   K    + A+ L+E  +
Sbjct: 481 YNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMI 540

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDE 600
           +S         TS+L+ + R +++
Sbjct: 541 DSGIDPS----TSILSLISRAKND 560



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 43/328 (13%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRP----------------SFN---------- 341
           YE++I S  +S  L+ +I  F EM +  F P                SFN          
Sbjct: 97  YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENK 156

Query: 342 --------IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
                    F  L+    +AG ++ S  + +E+   G  P+  +Y +LI+   K G+++ 
Sbjct: 157 SKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEK 216

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  L+ EM   G   N   +T++I    K+G       ++  M+  G  P   TY+C++ 
Sbjct: 217 AKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMN 276

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G+   A ++++ M   G+   + TY  L+  L +   ++ A K++ +MK+ G + 
Sbjct: 277 QLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINP 336

Query: 514 DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR----TNNFIVRQLFESCMKNALYESA 568
           ++   + L+  +   G +  AL   R + S G+     T N +V      C K     +A
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGF---CRKGDTSGAA 393

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVR 596
           K +++   E   K   V YT ++    R
Sbjct: 394 K-MVKEMEERGIKPSKVTYTILIDTFAR 420



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 2/221 (0%)

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y  +I SY ++  L+ ++  ++EM   GF P    F  ++     S   +   S F + 
Sbjct: 96  LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNEN 155

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +    L   S +  L++    +G+++ +  L   +T  G  P +  YT L+    K+  +
Sbjct: 156 KSKVVLDVYS-FGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEI 214

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           + A  +  EM  +G   +     VL+  + K+G           M   G+  N +    +
Sbjct: 215 EKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCV 274

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                K+   + A  + +   E     ++V Y +++  L R
Sbjct: 275 MNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCR 315


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 188/432 (43%), Gaps = 12/432 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L D   +    D    L++EMV    +  I     YN ++    K  K++ +   FK
Sbjct: 46  YNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIY---TYNSLLNAFCKETKMKEAMELFK 102

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI--YESMEKGECSLDGSTYELMIPSLAK 317
            + +   + D  +Y+ +++     G   +A E+  ++ +E+G CS +   Y  +I  L K
Sbjct: 103 TMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERG-CSANTVAYNALINGLCK 161

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
              ++ A KL +EM  + + P    + +++  + + G++  + + +  M   G+ P    
Sbjct: 162 DENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVA 221

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  L+++  K GK D A++L+ ++   G+ P+   +  I+   A+   +D A  +F  M 
Sbjct: 222 YNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMV 281

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
            +G  P  +TYS +L  H  + +VD A K+   M+  G  P + TY  LL  L K  LVD
Sbjct: 282 ASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVD 341

Query: 498 VAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A ++   M   G + D VS S VL    K   V  A      M    +  +      L 
Sbjct: 342 KAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILM 401

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616
           +   K    + AK LL+    S    D V Y +++  L      +  RH+ A       K
Sbjct: 402 DGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGL-----RKQGRHIQADRLTQAMK 456

Query: 617 AHAFLCGLFTGP 628
              FL   F  P
Sbjct: 457 EKGFLSDCFKAP 468



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 170/370 (45%), Gaps = 6/370 (1%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           V++   K  KL   Y  F+++LD+    D   YN+L+  +  KG   +A  +YE M    
Sbjct: 14  VLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVG 73

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
                 TY  ++ +  K  ++  A++LF+ M E+ F P    +++++  + K G++  ++
Sbjct: 74  LEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEAL 133

Query: 361 KVY---MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           ++    M  +GC     A  Y +LI    K   ++ A +L +EM   G+ P+   +  I+
Sbjct: 134 EMLFHKMIERGCSANTVA--YNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTIL 191

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               + GK+  A   F  M   G+ P    Y+ LL+     G+ D AMKL+  + + G  
Sbjct: 192 SGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYM 251

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P   TY ++L  LA++  +D A ++  +M   G + +  + S VL  + +   VD A + 
Sbjct: 252 PDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKV 311

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M   G   +      L +   K  L + A  L  T V++    D+V Y+ VL  L +
Sbjct: 312 LEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCK 371

Query: 597 CQDEQNERHL 606
                + R L
Sbjct: 372 TNKVHDARVL 381



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 184/435 (42%), Gaps = 43/435 (9%)

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
           +C  +  ++ V++  F  +G     ++++E M     S DG  Y ++I   AK GR+D A
Sbjct: 3   ECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEA 62

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
            +L++EM      PS   + SL+++  K  ++  +M+++  M   G  P    Y ++I  
Sbjct: 63  NRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISG 122

Query: 385 YAKAGKLDTALR-LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
             K GK+  AL  L+ +M   G   N   +  +I    K   ++ A  +  +M   G++P
Sbjct: 123 LCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVP 182

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              TY+ +L      G+V  A + ++SM S G  P +  Y  LL  L K    D A K+ 
Sbjct: 183 DNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLF 242

Query: 504 LEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            ++   GY  D V+ + +L+   +  ++D A    + M +SG   N      +     + 
Sbjct: 243 KDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRA 302

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLC 622
              + A  +LE   +  A  D+V Y  +L  L +              +    KAH    
Sbjct: 303 KKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCK--------------TNLVDKAH---- 344

Query: 623 GLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV--NVLLNYLVLMGQINRARCVWK 680
                             E F  +   ++ G A   V  +V+LN L    +++ AR ++ 
Sbjct: 345 ------------------ELFSTM---VDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFD 383

Query: 681 VAYENKLFPKAIVFD 695
              E KL P  + F+
Sbjct: 384 RMIERKLVPDVVTFN 398



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 122/265 (46%), Gaps = 2/265 (0%)

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R   P+   F  ++ S  K G+L    K++ +M   G  P    Y  LI+ YAK G++D 
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDE 61

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A RL++EM   G  P+   +  ++ +  K  K+  AM +F  M   GF P   TYS ++ 
Sbjct: 62  ANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121

Query: 454 MHASSGQVDSAMK-LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
               +G+V  A++ L++ M   G       Y AL+  L K + ++ A K+L EM + GY 
Sbjct: 122 GLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYV 181

Query: 513 VD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D ++ + +L    + G V  A ++   M S G   +      L ++  K    + A  L
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL 241

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
            +  +      D V Y S+L  L R
Sbjct: 242 FKDVIAKGYMPDTVTYNSILLGLAR 266


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 170/365 (46%), Gaps = 4/365 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSD-CKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
            +  +I+ L   +K++ +   FKK++  + C+ +   Y  +M     KG   KAF++   
Sbjct: 144 TFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRL 203

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+G    +  TY ++I +  K G LD A  L  EMK+++  P    +++L+D++ K  +
Sbjct: 204 MEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQ 263

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +    +++EM      P+   + S+I+   K GK++ A  +   M   G  P+   + M
Sbjct: 264 WENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNM 323

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           II+ +   G++D A  IF  M      P   +Y+ L+  +A   ++D AM++   ++  G
Sbjct: 324 IIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKG 383

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHAL 534
           L+P + T   LL  L +      A     EM + G+  D+ +   +L  Y K+G V+ A+
Sbjct: 384 LKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAM 443

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                +      TN  I   + +   KN   + A    E         D++ YT++++  
Sbjct: 444 SHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGY 503

Query: 595 VRCQD 599
             CQ+
Sbjct: 504 --CQE 506



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 169/364 (46%), Gaps = 7/364 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           D + SL    K++S  +P D   Y  L D L +   ++ + +LF EM+H +    +  F 
Sbjct: 230 DGATSLLNEMKQKS--IPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTF- 286

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             N VI  L K  K+E +    + +++     D  +YN+++  +  +G   +A EI++SM
Sbjct: 287 --NSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  +Y ++I   A+  ++D A+++ +E+ ++  +PS      L+  + + GR 
Sbjct: 345 INKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRT 404

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            ++   + EM   GH P    + +L+  Y K G ++ A+  + ++       N  ++T +
Sbjct: 405 KSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAV 464

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K+GKLD A + F  +   G  P   TY+ ++  +   G +D A  +   M   G 
Sbjct: 465 IDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGC 524

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
                TY  ++    +   V      L E+    +S + +  ++LM +  +D S+   + 
Sbjct: 525 LADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAEDPSITRKMH 584

Query: 536 WLRF 539
           W++ 
Sbjct: 585 WIKL 588


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 16/420 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D L + R  D    LF EM    ++  +    +Y  +I    ++ K E + C F 
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEM---KAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFN 180

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++LD   + D  + ++L+ +   +G   +A E+ E M +  C LD  TY  +I  L    
Sbjct: 181 EMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKH 240

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM------QGCGHRP 373
           R+  A +LF  M++   RP    + +L+  + + G ++T+++++ EM       G   +P
Sbjct: 241 RISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKP 300

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y  +I+   K  + D A  L+ EM+  G  P+   +T +I     SGK + A  +F
Sbjct: 301 TLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLF 360

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +M   G  P  +T S L++M    G+V  A KL   +   G  P + T T L+  L  +
Sbjct: 361 NEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMK 420

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSS----GI--R 546
             +  A ++ L+M+ +G   +V     LM  + + G++  AL   + M S     GI  +
Sbjct: 421 HRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCK 480

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            N      + +   K    + A+ L +         D++ YTS++    R    ++ ++L
Sbjct: 481 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 540



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 156/336 (46%), Gaps = 13/336 (3%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +  VL+ +F  +G   +A E+ E M +  C LD  TY  +I  L    R+  A +LF
Sbjct: 9   DVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLF 68

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM------QGCGHRPSAPMYVSLI 382
             MK+   RP    + +L+  + + G+++ ++ ++ EM       G   +P+   Y  +I
Sbjct: 69  MSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIII 128

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           +   K  + D A  L+ EM+  G  P+   +T +I    +SGK + A  +F +M   G  
Sbjct: 129 DGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIR 188

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
              +T S L+++    G+V  A +L   M   G    + TY+ L+  L  +  +  A ++
Sbjct: 189 SDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRL 248

Query: 503 LLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFM----GSSGIRTNNFIVRQ--L 555
            + M+ +G   D  A   LM  + + G+++ AL+  + M    G  GI+    ++    +
Sbjct: 249 FMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSII 308

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +   K+   + A+ L +         D++ YT+++
Sbjct: 309 IDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLI 344



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 156/332 (46%), Gaps = 9/332 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKLEMSYC 256
           Y  L   L ++   +  L L  EM++D+S+ GI       +Y+ +I  L K  + + +  
Sbjct: 83  YGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARE 142

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            FK++       D  SY  L+  F   G   KA  ++  M       D +T  ++I  L 
Sbjct: 143 LFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILC 202

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           K G++  A +L + M +R        +++L+  +    R+  + +++M MQ  G RP A 
Sbjct: 203 KEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAI 262

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFR------PNFGLFTMIIESHAKSGKLDIAM 430
            Y +L++   + G ++TAL+L  EM     R      P    +++II+   K  + D A 
Sbjct: 263 AYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEAR 322

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +F +M+  G +P   +Y+ L+     SG+ + A  L+N M   G++P ++T + L+ +L
Sbjct: 323 ELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDML 382

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            K+  V  A K+L  +   G   DV     L+
Sbjct: 383 CKKGKVIEANKLLEVVIQRGCIPDVVTCTTLV 414



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 156/343 (45%), Gaps = 14/343 (4%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C +D  +Y+ L+     K    +A +++ SM+K  C  D   Y  ++  L ++G+++ A+
Sbjct: 41  CILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIAL 100

Query: 326 KLFQEMKERN------FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            L QEM           +P+   ++ ++D + K  R D + +++ EM+  G  P    Y 
Sbjct: 101 HLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYT 160

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SLI  + ++GK + A  L++EM   G R +    +M+I+   K GK+  A  +   M + 
Sbjct: 161 SLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQR 220

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G +    TYS L++      ++  A +L+ SM   G RP    Y  L+  L +   ++ A
Sbjct: 221 GCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTA 280

Query: 500 AKILLEM--KTMGYSVD-----VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
            ++  EM   T  Y +      +S S ++    KD   D A    + M + GI  +    
Sbjct: 281 LQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISY 340

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             L      +  +E AK L    ++   + D V  +SVL  ++
Sbjct: 341 TTLIHGFCLSGKWEKAKCLFNEMLDVGIQPD-VTTSSVLIDML 382



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 135/293 (46%), Gaps = 18/293 (6%)

Query: 274 NVLMTLFLNKGLPYK-----AFEIYESMEKG------ECSLDGSTYELMIPSLAKSGRLD 322
           NV+    L KGL        A E++++M          C  +  +Y ++I  L K GR D
Sbjct: 441 NVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRED 500

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A +LF+EMK     P    + SL+    ++G+   +  ++ EM   G +P    +  LI
Sbjct: 501 EARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLI 560

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           +   K GK+  A  L + M   G  PN   +T +++    + ++  A  +F  M++ G L
Sbjct: 561 DMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCL 620

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTS------AGLRPGLSTYTALLTLLAKRKLV 496
           P   TY  L++    +G + +A++L+  M S         +P + +Y+ ++  L K    
Sbjct: 621 PDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGRE 680

Query: 497 DVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
           D A ++  EMK +G   +V S + ++  + + G ++ A      M   G++ N
Sbjct: 681 DEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLN 733



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 127/272 (46%), Gaps = 9/272 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D L +    D    LF EM    +   I    +Y  +I    ++ K + +   F 
Sbjct: 486 YSIIIDGLCKCGREDEARELFKEM---KALGVIPDVISYTSLIHGFCRSGKWKDAKYLFN 542

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++D   + D  +++VL+ +   +G   +A E+ E M +  C  +  TY  ++  L  + 
Sbjct: 543 EMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMND 602

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM------QGCGHRP 373
           R+  A +LF +M++    P    + +L+  + + G + T+++++ +M       G   +P
Sbjct: 603 RISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKP 662

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  +I+   K G+ D A  L+ EM+  G  PN   +T +I    +SGKL+ A  +F
Sbjct: 663 DVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLF 722

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +M   G      TYS ++      GQ+D A+
Sbjct: 723 NEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 754



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 172/406 (42%), Gaps = 16/406 (3%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           ML D+L +         L + M+    +  I     Y+ +I+ L    ++  +   F  +
Sbjct: 196 MLIDILCKEGKVIEANELLEVMIQ---RGCILDIVTYSTLIKGLCMKHRISEATRLFMSM 252

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM--EKG----ECSLDGSTYELMIPSL 315
               C+ D  +Y  LM      G    A ++++ M  + G    +C     +Y ++I  L
Sbjct: 253 QKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGL 312

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            K  R D A +LF+EMK +   P    + +L+     +G+ + +  ++ EM   G +P  
Sbjct: 313 CKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDV 372

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
                LI+   K GK+  A +L + +   G  P+    T +++      ++  A  +F  
Sbjct: 373 TTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLK 432

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS------AGLRPGLSTYTALLTL 489
           M++ G +P   T + L++    SG +  A++L+ +M S         +P   +Y+ ++  
Sbjct: 433 MQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDG 492

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
           L K    D A ++  EMK +G   DV S + ++  + + G    A      M   G++ +
Sbjct: 493 LCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPD 552

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                 L +   K      A  LLE  ++     + V YT+++  L
Sbjct: 553 VTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGL 598



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 41/276 (14%)

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
           +CK +  SY++++      G   +A E+++ M+      D  +Y  +I    +SG+   A
Sbjct: 478 NCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDA 537

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAG------------------------------ 354
             LF EM +   +P    F+ L+D + K G                              
Sbjct: 538 KYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKG 597

Query: 355 -----RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI------ 403
                R+  + +++M+MQ  G  P    Y +L++   + G + TAL L  +M        
Sbjct: 598 LCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYG 657

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
             F+P+   +++II+   K G+ D A  +F +M+  G +P   +Y+ L+     SG+++ 
Sbjct: 658 TNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLED 717

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           A  L+N M   G++    TY+ ++    K   +D A
Sbjct: 718 AKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 753



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 113/225 (50%), Gaps = 11/225 (4%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           LF+EMV    +  ++ FS    +I  L K  K+  +    + ++   C  +T +Y  L+ 
Sbjct: 540 LFNEMVDIGVQPDVTTFSV---LIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVK 596

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE----- 333
                    +A +++  M+K  C  D  TY  ++  L ++G +  A++L ++M       
Sbjct: 597 GLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQY 656

Query: 334 -RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
             NF+P    ++ ++D + K GR D + +++ EM+  G  P+   Y SLI  + ++GKL+
Sbjct: 657 GTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLE 716

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
            A  L++EM   G + N   ++++I    K G++D A+  F  ME
Sbjct: 717 DAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL--FQKME 759



 Score = 47.4 bits (111), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 7/200 (3%)

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G +P+     ++I+   K GK+  A  +   M + G +    TYS L++      ++  
Sbjct: 4   VGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISE 63

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM--KTMGYSVD-----VS 516
           A +L+ SM   G RP    Y  L+  L +   +++A  +  EM   T  Y +      VS
Sbjct: 64  ATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVS 123

Query: 517 ASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            S ++    KD   D A    + M + G+  +      L     ++  +E AK L    +
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEML 183

Query: 577 ESAAKVDLVLYTSVLAHLVR 596
           +   + D+   + ++  L +
Sbjct: 184 DVGIRSDVTTSSMLIDILCK 203



 Score = 42.4 bits (98), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M   G  P  +T   L++M    G+V  A +L   M   G    + TY+ L+  L  +  
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFM----GSSGIRTNNF 550
           +  A ++ + MK +G   D  A   LM  + + G ++ AL   + M       GI+    
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 551 IVRQ--LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +V    + +   K+   + A+ L +         D++ YTS++    R
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCR 168


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 164/347 (47%), Gaps = 3/347 (0%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            D  L +F+E++ D+  N       Y  +I+       ++ +     ++L    + DT +
Sbjct: 95  IDLALKVFEELLKDN--NCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFT 152

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YNV+      +G   +AFE   ++    C  D  TY +++ +L   G+ D   K   E+ 
Sbjct: 153 YNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIF 212

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
            R   P+   ++ L+ S+ + G+++ S+ +   M+  G  P A  Y  LI ++ + GKLD
Sbjct: 213 SRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLD 272

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A+   D M   GF P+   +  I+ +  K+G  D A+ IF  ++  G  P  S+Y+ +L
Sbjct: 273 MAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTML 332

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
               SSG    A+ + + M S G+ P + TY +L++ L +  +VD A  +L +M +  + 
Sbjct: 333 SALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQ 392

Query: 513 VD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            + VS   VL+   K   +D A+  L  M  +G + N      L E 
Sbjct: 393 PNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEG 439



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 159/362 (43%), Gaps = 2/362 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AYN VI    KA+++E +     ++       D  ++N+++  F  KG    A +++E +
Sbjct: 46  AYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEEL 105

Query: 297 EK-GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
            K   C     TY ++I +    G +D A+KL  EM  R   P    +  +   + K G+
Sbjct: 106 LKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGK 165

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D + +    +   G +P    Y  L+ +    GK D   +   E+   G  PN   +++
Sbjct: 166 VDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSI 225

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I S  + GK++ ++++   M+  G  P    Y  L+      G++D A++  + M   G
Sbjct: 226 LISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDG 285

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHAL 534
             P +  Y  ++  L K    D A +I  ++  +G   +VS+ + ++  +   G    AL
Sbjct: 286 FLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRAL 345

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             +  M S GI  +      L     ++ + + A  LL   +    + ++V Y +VL  L
Sbjct: 346 GMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGL 405

Query: 595 VR 596
            +
Sbjct: 406 CK 407



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 149/338 (44%), Gaps = 2/338 (0%)

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +L+   K D  +YN +++ F        A  + + M++   S D  T+ +MI +    G+
Sbjct: 35  ILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGK 94

Query: 321 LDAAIKLFQE-MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +D A+K+F+E +K+ N +P+   +  L+++    G +D ++K+  EM   G  P    Y 
Sbjct: 95  IDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYN 154

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            +     K GK+D A      +   G +P+   + +++ +    GK D      +++   
Sbjct: 155 VITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSR 214

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   TYS L+      G+++ ++ L   M   GL P    Y  L+    +   +D+A
Sbjct: 215 GCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMA 274

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            + L  M   G+  D+   + +M  + K+G+ DHA+     +   G   N      +  +
Sbjct: 275 IEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSA 334

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +     A  ++   +      D++ Y S+++ L R
Sbjct: 335 LWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCR 372



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 123/268 (45%), Gaps = 3/268 (1%)

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M  ++++P   +   L+     +  +D + +V   ++  G +P    Y ++I  + KA +
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANR 59

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PTPSTYS 449
           +++A  + D M+  GF P+     ++I +    GK+D+A+ +F ++ +     PT  TY+
Sbjct: 60  IESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYT 119

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+E +   G +D A+KL + M S GL P   TY  +   L K   VD A + +  + + 
Sbjct: 120 ILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSR 179

Query: 510 GYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G   DV   ++L+   +  G  D   +W+  + S G   N      L  S  ++   E +
Sbjct: 180 GCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEES 239

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L++   E     D   Y  ++A   R
Sbjct: 240 VNLVKVMKEKGLTPDAYCYDPLIAAFCR 267



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 108/235 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L +  K+E S    K + +     D   Y+ L+  F  +G    A E  + M
Sbjct: 222 TYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCM 281

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D   Y  ++ +L K+G  D A+++F ++ E    P+ + + +++ ++  +G  
Sbjct: 282 ICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDR 341

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ +  +M   G  P    Y SLI    + G +D A+ L  +M    F+PN   +  +
Sbjct: 342 YRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTV 401

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           +    K+ ++D A+ +   M   G  P  +TY+ L+E    SG    AM+L NS+
Sbjct: 402 LLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSL 456



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 4/226 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           + S++L +  K +    P   CY  L          D  +   D M+ D     I     
Sbjct: 237 EESVNLVKVMKEKGL-TPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIV---N 292

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++  L K    + +   F K+ +  C  +  SYN +++   + G  Y+A  +   M 
Sbjct: 293 YNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQML 352

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  TY  +I  L + G +D AI L  +M    F+P+   + +++  + KA R+D
Sbjct: 353 SKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRID 412

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +++V   M   G +P+   Y  LIE    +G    A+ L + + I
Sbjct: 413 DAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYI 458


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/473 (22%), Positives = 207/473 (43%), Gaps = 39/473 (8%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++N ++  L K  K++ +   F+ V+  D + ++ +YN+++ +    G   +A+ I + M
Sbjct: 356 SFNSILTCLGKKRKVDEALSLFE-VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEM 414

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      +  T  +M+  L K+ +L+ A K+F+   +R   P    + SL+D +GK G++
Sbjct: 415 EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV 474

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + +++ +M   GH  +  +Y SLI ++   G+ +   +++ E+   G +P+  L    
Sbjct: 475 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTY 534

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K+G+++    IF D+   GFLP   +YS L+     +GQ      ++++M   G 
Sbjct: 535 MDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGF 594

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
                 Y A++    K   V  A +IL EMK       V+    ++  + K   +D A  
Sbjct: 595 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 654

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
                 S GI  N  +   L +   K    + A  +LE  ++     ++  + S+L  LV
Sbjct: 655 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 714

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
           + + E NE               A +C  F   ++ K P                     
Sbjct: 715 KAE-EINE---------------ALVC--FQSMKEMKCP-------------------PN 737

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLS 708
            Y  ++L+N L  + + N+A   W+   +  L P  + +   I+    V N++
Sbjct: 738 TYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNIT 790



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 193/411 (46%), Gaps = 5/411 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+   +P    +  +   L + R  D  LSLF+ M  D+  N     S YN +I  L   
Sbjct: 346 RERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNS----STYNIIIDMLCLG 401

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            ++E +Y    ++  +    +  + N+++          +A++I+ES  +  C+ D  TY
Sbjct: 402 GRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTY 461

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I  L K G++D A +LF++M +     +  ++ SL+ +    GR +   K++ E+  
Sbjct: 462 CSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIR 521

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G +P   +  + ++   KAG+++    +++++R  GF P+   ++++I    K+G+   
Sbjct: 522 RGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARE 581

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             +IF  M++ GF      Y+ +++    SG+V  A ++   M    ++P ++TY A++ 
Sbjct: 582 TSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVD 641

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
            LAK   +D A  +  E K+ G  ++V   S ++  + K G +D A   L  M   G+  
Sbjct: 642 GLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTP 701

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
           N +    L ++ +K      A    ++  E     +   Y+ ++  L R Q
Sbjct: 702 NVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQ 752



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 165/359 (45%), Gaps = 4/359 (1%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           FSAY  +I  LA+A + E +    +++ +   ++    +  L+     +G    A  + +
Sbjct: 179 FSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVD 238

Query: 295 SMEKGEC-SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            + KG C   D   Y + I    K+G +D A K F E+K +  +P    + S++  + KA
Sbjct: 239 EV-KGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKA 297

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           GRL  + +++ +M+     P A  Y ++I  Y  AG+ + A +L + +R  G  P+   F
Sbjct: 298 GRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSF 357

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             I+    K  K+D A+S+F  M++    P  STY+ +++M    G+V+ A ++ + M  
Sbjct: 358 NSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH 416

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
           A L P L T   ++  L K + ++ A KI       G + D V+   ++    K G VD 
Sbjct: 417 ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDE 476

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           A R    M  +G   N  +   L  +   +   E    + +  +    K DL L  + +
Sbjct: 477 AYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYM 535



 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 150/313 (47%), Gaps = 4/313 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            R  DG   +F E++    K  ++L + Y   +  + KA ++E     F+ +       D
Sbjct: 507 GRKEDGH-KIFKELIRRGCKPDLTLLNTY---MDCVFKAGEVEKGRMIFEDIRSYGFLPD 562

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            +SY++L+      G   +   I+ +M++   +LD   Y  ++    KSG++  A ++ +
Sbjct: 563 VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 622

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EMKE+  +P+   + ++VD + K  RLD +  ++ E +  G   +  +Y SLI+ + K G
Sbjct: 623 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 682

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++D A  + +EM   G  PN   +  ++++  K+ +++ A+  F  M+     P   TYS
Sbjct: 683 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 742

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+       + + A   +  M   GL P + TYT +++ LAK   +  A  +    K  
Sbjct: 743 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 802

Query: 510 GYSVDVSASDVLM 522
           G   D ++ + L+
Sbjct: 803 GGIPDAASFNALI 815



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 140/286 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I  L KA +   +   F  +      +D ++YN ++  F   G  +KA+EI E M
Sbjct: 565 SYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEM 624

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++       +TY  ++  LAK  RLD A  LF+E K +    +  +++SL+D  GK GR+
Sbjct: 625 KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRI 684

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  +  EM   G  P+   + SL+++  KA +++ AL  +  M+     PN   ++++
Sbjct: 685 DEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSIL 744

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    +  K + A   + DM++ G +P   TY+ ++   A  G +  A  L+    + G 
Sbjct: 745 INGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGG 804

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            P  +++ AL+  ++       A ++  E +  G  +++ +   L+
Sbjct: 805 IPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLL 850



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 157/348 (45%), Gaps = 5/348 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D L +    D    LF++M+ D+  N   +   Y  +I+      + E  +  FK
Sbjct: 461 YCSLIDGLGKKGQVDEAYRLFEKML-DAGHNANPV--VYTSLIRNFFIHGRKEDGHKIFK 517

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++   CK D    N  M      G   K   I+E +       D  +Y ++I  L K+G
Sbjct: 518 ELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAG 577

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +      +F  MK++ F      + ++VD   K+G++  + ++  EM+    +P+   Y 
Sbjct: 578 QARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYG 637

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           ++++  AK  +LD A  L++E +  G   N  L++ +I+   K G++D A  I  +M + 
Sbjct: 638 AIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 697

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   T++ LL+    + +++ A+  + SM      P   TY+ L+  L + +  + A
Sbjct: 698 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKA 757

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL-RFMGSSGI 545
                +M+  G   +V     ++  + K G++  A     RF  + GI
Sbjct: 758 FVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI 805



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 143/319 (44%), Gaps = 35/319 (10%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +  +L ++ RLD A+     M+   FRP+F+ +  L+ ++ +A R + ++++  +MQ  G
Sbjct: 150 LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 209

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           +     ++ +L+ + A+ G++  AL L DE++ +   P+  L+ + I+   K+G +D+A 
Sbjct: 210 YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAW 269

Query: 431 SIFTDMERAGFLPTPSTYSCLL-----------------EMHA----------------- 456
             F +++  G  P   +Y+ ++                 +M A                 
Sbjct: 270 KFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 329

Query: 457 -SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
            S+G+ + A KL   +   G  P + ++ ++LT L K++ VD A  +   MK        
Sbjct: 330 GSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSS 389

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           + + ++ +    G V+ A R L  M  + +  N   V  + +   K    E A  + E+ 
Sbjct: 390 TYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESA 449

Query: 576 VESAAKVDLVLYTSVLAHL 594
            +     D V Y S++  L
Sbjct: 450 SQRGCNPDCVTYCSLIDGL 468



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 148/331 (44%), Gaps = 5/331 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAK 247
           R   ++P    Y +L   L ++    G       + H   + G +L + AYN V+    K
Sbjct: 555 RSYGFLPDVRSYSILIHGLTKA----GQARETSNIFHAMKQQGFALDARAYNAVVDGFCK 610

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
           + K+  +Y   +++ +   +    +Y  ++          +A+ ++E  +     L+   
Sbjct: 611 SGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVL 670

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  +I    K GR+D A  + +EM ++   P+   + SL+D++ KA  ++ ++  +  M+
Sbjct: 671 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK 730

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
                P+   Y  LI    +  K + A   W +M+  G  PN   +T +I   AK G + 
Sbjct: 731 EMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNIT 790

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A S+F   +  G +P  ++++ L+E  +++ +   A +++      G R  + +  +LL
Sbjct: 791 DAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLL 850

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
             L K + ++ AA +   ++ +  S   S S
Sbjct: 851 DALNKSECLEQAAIVGAVLREIAKSQHASRS 881



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 101/206 (49%), Gaps = 2/206 (0%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           L    Y  ++P L     L A  K+ +EM    +       A L  ++ +A RLD ++  
Sbjct: 109 LPADAYHAVLPFLHHD--LAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLA 166

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
              M+    RP+   Y  LI + A+A + + AL L  +M+  G+     LFT ++ + A+
Sbjct: 167 VAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAR 226

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            G++  A+++  +++ +   P    Y+  ++    +G VD A K ++ + + GL+P   +
Sbjct: 227 EGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVS 286

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKT 508
           YT+++ +L K   +  A ++  +M+ 
Sbjct: 287 YTSMIWVLCKAGRLGEAEELFAQMEA 312



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 1/235 (0%)

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           KV  EM   G+         L  +  +A +LD A+     MR   FRP F  +T++I + 
Sbjct: 130 KVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGAL 189

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
           A++ + + A+ +   M+  G+      ++ L+   A  GQV  A+ L + +  + L P +
Sbjct: 190 AEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDI 249

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRF 539
             Y   +    K   VD+A K   E+K  G    DVS + ++ V  K G +  A      
Sbjct: 250 VLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQ 309

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           M +       +    +         +E A  LLE   E      +V + S+L  L
Sbjct: 310 MEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL 364


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 175/394 (44%), Gaps = 4/394 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L   L + +     L L   M     +  + +  AY  VI  L +  +L+ +Y  F 
Sbjct: 174 YTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVV-AYTTVINGLLREGQLDKAYSLFD 232

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +LD     D  +Y+ +++         KA +++  M K     D   Y  ++     SG
Sbjct: 233 AMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSG 292

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +   AI +F++M      P    + +L+D + K G+   + K++  +   GH+P +  Y 
Sbjct: 293 KPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYG 352

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +L+  YA  G L     L D M   G +    +F MI+ ++AK  K+D A+ +F++M + 
Sbjct: 353 TLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQ 412

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P    Y  +L++  ++G+VD A+  +NS+ S GL P +  +T L+  L      D  
Sbjct: 413 GLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKV 472

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            ++  EM   G  +D    + +M  + K G V  A      M   GI  N      L + 
Sbjct: 473 EELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDG 532

Query: 559 -CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            C+   + E+ K LL   V +  K   V Y +++
Sbjct: 533 YCLDGKMDEAMK-LLGVMVFNGVKPSDVTYNTII 565



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 134/285 (47%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++ YL K  K   +   F  ++    K D+ +Y  L+  +  +G   +  ++ + M 
Sbjct: 316 YTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMM 375

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K    L    + +++ + AK  ++D A+ +F  M+++   P    + +++D +  AGR+D
Sbjct: 376 KKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVD 435

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++  +  ++  G  P+  ++ +LI       K D    L  EM   G   +   F  I+
Sbjct: 436 DALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIM 495

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  K G++  A ++F  M R G  P  +TY+ L++ +   G++D AMKL   M   G++
Sbjct: 496 GNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVK 555

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           P   TY  ++   ++   ++    +L EM   G +  +   ++L+
Sbjct: 556 PSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLL 600


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 170/364 (46%), Gaps = 4/364 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSD-CKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +N +++ L   +K++ +   FKK++  + C+ +   Y  +M     KG   KAF++   M
Sbjct: 145 FNTLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLM 204

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+G    +   Y ++I +  K G LD A  L  EMK+++  P    +++L+D++ K  + 
Sbjct: 205 EQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQW 264

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +    +++EM      P+   + S+I+   K GK++ A  +   M   G  P+   + MI
Sbjct: 265 ENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMI 324

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ +   G++D A  IF  M      P   +Y+ L+  +A   ++D AM++   ++  GL
Sbjct: 325 IDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGL 384

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
           +P + T   LL  L +      A     EM + G+  D+ +   +L  Y K+G V+ A+ 
Sbjct: 385 KPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMS 444

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +      TN  I   + +   KN   + A    E         D++ YT++++   
Sbjct: 445 HFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGY- 503

Query: 596 RCQD 599
            CQ+
Sbjct: 504 -CQE 506



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 162/351 (46%), Gaps = 6/351 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           D + SL    K++S  +P D   Y  L D L +   ++ + +LF EM+H +    +  F 
Sbjct: 230 DGATSLLNEMKQKS--IPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTF- 286

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             N VI  L K  K+E +    + +++     D  +YN+++  +  +G   +A EI++SM
Sbjct: 287 --NSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  +  +Y ++I   A+  ++D A+++ +E+ ++  +PS      L+  + + GR 
Sbjct: 345 INKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRT 404

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            ++   + EM   GH P    + +L+  Y K G ++ A+  + ++       N  ++T +
Sbjct: 405 KSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAV 464

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K+GKLD A + F  +   G  P   TY+ ++  +   G +D A  +   M   G 
Sbjct: 465 IDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGC 524

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
                TY  ++    +   V      L E+    +S + +  ++LM  I +
Sbjct: 525 LADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAE 575


>gi|357476703|ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509692|gb|AES90834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 715

 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 114/472 (24%), Positives = 200/472 (42%), Gaps = 19/472 (4%)

Query: 268 IDTQSYNVLMTLFLNKGLPYKAF--------EIYESMEKGECSLDGSTYELMIPSLAKSG 319
           I TQ+   + T+F N  +    F        E+   M  G   LD  TY  +I    K  
Sbjct: 180 IKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCN 239

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+  F+ M +    P    F++++D   + G+++  + ++   +  G +P    + 
Sbjct: 240 LFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFS 299

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            L + + +AG  D    +  EM+  G +PN  ++  ++E+  K+GK   A S+F +M  +
Sbjct: 300 VLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDS 359

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   T + +++++  +     A++L+  M   G       Y  LL + A   L++ A
Sbjct: 360 GIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEA 419

Query: 500 AKILLEMKTMGYSVDVSAS--DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
             +  +MK   +    S S   +L +Y  +G+VD A++    M   GI  N      L +
Sbjct: 420 ETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQ 479

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA 617
              K    +    + +  VE   K D  L   +L+ +   Q  +++  ++A L     K 
Sbjct: 480 CLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPKL 539

Query: 618 HAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARC 677
            AF+  +       ++     V+E F  I         R F N L++       + RA  
Sbjct: 540 VAFIQLIVD-----EETSFETVKEEFKAIMSNAVVEVRRPFCNCLIDICRNKDLVERAHE 594

Query: 678 VWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAV---MHTLHRFRKR 726
           +  +      +P      Q+  W LDVR LSVGAAL A+   M TL +  KR
Sbjct: 595 LLYLGTLYGFYPSLHNKTQY-EWCLDVRTLSVGAALTALEEWMTTLTKIVKR 645



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 198/447 (44%), Gaps = 24/447 (5%)

Query: 158 LQFVPKMVHITQALKVIND---SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFD 214
           L+ +P  +    AL V+N       +   F W K Q+  +P +    + ++V  +S  F 
Sbjct: 148 LEEIPSSLTRGNALLVLNSLRPWQKTHMFFNWIKTQN-LLPME---TIFYNVTMKSLRFG 203

Query: 215 GMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
               + +E+ H     G+ L +  Y+ +I    K +  + +   F+++  +    D  ++
Sbjct: 204 RQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTF 263

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + ++ ++   G   +   ++E         D  T+ ++     ++G  D    + QEMK 
Sbjct: 264 SAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKS 323

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
              +P+  ++ +L+++MGKAG+   +  ++ EM   G  P+     ++I+ Y KA     
Sbjct: 324 LGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKD 383

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PTPSTYSCLL 452
           AL LW  M+  G+  +F L+  ++   A  G ++ A ++F DM+++    P   +Y+ +L
Sbjct: 384 ALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAML 443

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
            ++ S G VD AMKL+  M+  G+   +   T L+  L K   +D   K+       G  
Sbjct: 444 NIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVK 503

Query: 513 VDVSASDVLM--VYIKDGSVDHALRWLRFMGSSGIRTNNFI------------VRQLFES 558
            D      L+  V +  GS D   + L  +  +  +   FI            V++ F++
Sbjct: 504 PDDRLCGCLLSVVSLSQGSKDQE-KVLACLQRANPKLVAFIQLIVDEETSFETVKEEFKA 562

Query: 559 CMKNALYESAKPLLETYVESAAKVDLV 585
            M NA+ E  +P     ++     DLV
Sbjct: 563 IMSNAVVEVRRPFCNCLIDICRNKDLV 589


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/473 (22%), Positives = 207/473 (43%), Gaps = 39/473 (8%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++N ++  L K  K++ +   F+ V+  D + ++ +YN+++ +    G   +A+ I + M
Sbjct: 222 SFNSILTCLGKKRKVDEALSLFE-VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEM 280

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      +  T  +M+  L K+ +L+ A K+F+   +R   P    + SL+D +GK G++
Sbjct: 281 EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV 340

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + +++ +M   GH  +  +Y SLI ++   G+ +   +++ E+   G +P+  L    
Sbjct: 341 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTY 400

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K+G+++    IF D+   GFLP   +YS L+     +GQ      ++++M   G 
Sbjct: 401 MDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGF 460

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
                 Y A++    K   V  A +IL EMK       V+    ++  + K   +D A  
Sbjct: 461 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 520

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
                 S GI  N  +   L +   K    + A  +LE  ++     ++  + S+L  LV
Sbjct: 521 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 580

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
           + + E NE               A +C  F   ++ K P                     
Sbjct: 581 KAE-EINE---------------ALVC--FQSMKEMKCP-------------------PN 603

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLS 708
            Y  ++L+N L  + + N+A   W+   +  L P  + +   I+    V N++
Sbjct: 604 TYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNIT 656



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 193/411 (46%), Gaps = 5/411 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+   +P    +  +   L + R  D  LSLF+ M  D+  N     S YN +I  L   
Sbjct: 212 RERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNS----STYNIIIDMLCLG 267

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            ++E +Y    ++  +    +  + N+++          +A++I+ES  +  C+ D  TY
Sbjct: 268 GRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTY 327

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I  L K G++D A +LF++M +     +  ++ SL+ +    GR +   KV+ E+  
Sbjct: 328 CSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIR 387

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G +P   +  + ++   KAG+++    +++++R  GF P+   ++++I    K+G+   
Sbjct: 388 RGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARE 447

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             +IF  M++ GF      Y+ +++    SG+V  A ++   M    ++P ++TY A++ 
Sbjct: 448 TSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVD 507

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
            LAK   +D A  +  E K+ G  ++V   S ++  + K G +D A   L  M   G+  
Sbjct: 508 GLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTP 567

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
           N +    L ++ +K      A    ++  E     +   Y+ ++  L R Q
Sbjct: 568 NVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQ 618



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 171/374 (45%), Gaps = 4/374 (1%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           FSAY  +I  LA+A + E +    +++ +   ++    +  L+     +G    A  + +
Sbjct: 45  FSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVD 104

Query: 295 SMEKGEC-SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            + KG C   D   Y + I    K+G +D A K F E+K +  +P    + S++  + KA
Sbjct: 105 EV-KGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKA 163

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           GRL  + +++ +M+     P A  Y ++I  Y  AG+ + A +L + +R  G  P+   F
Sbjct: 164 GRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSF 223

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             I+    K  K+D A+S+F  M++    P  STY+ +++M    G+V+ A ++ + M  
Sbjct: 224 NSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH 282

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
           A L P L T   ++  L K + ++ A KI       G + D V+   ++    K G VD 
Sbjct: 283 ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDE 342

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A R    M  +G   N  +   L  +   +   E    + +  +    K DL L  + + 
Sbjct: 343 AYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMD 402

Query: 593 HLVRCQDEQNERHL 606
            + +  + +  R +
Sbjct: 403 CVFKAGEVEKGRMI 416



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 150/313 (47%), Gaps = 4/313 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            R  DG   +F E++    K  ++L + Y   +  + KA ++E     F+ +       D
Sbjct: 373 GRKEDGH-KVFKELIRRGCKPDLTLLNTY---MDCVFKAGEVEKGRMIFEDIRSYGFLPD 428

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            +SY++L+      G   +   I+ +M++   +LD   Y  ++    KSG++  A ++ +
Sbjct: 429 VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 488

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EMKE+  +P+   + ++VD + K  RLD +  ++ E +  G   +  +Y SLI+ + K G
Sbjct: 489 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 548

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++D A  + +EM   G  PN   +  ++++  K+ +++ A+  F  M+     P   TYS
Sbjct: 549 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 608

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+       + + A   +  M   GL P + TYT +++ LAK   +  A  +    K  
Sbjct: 609 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 668

Query: 510 GYSVDVSASDVLM 522
           G   D ++ + L+
Sbjct: 669 GGIPDAASFNALI 681



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 157/348 (45%), Gaps = 5/348 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D L +    D    LF++M+ D+  N   +   Y  +I+      + E  +  FK
Sbjct: 327 YCSLIDGLGKKGQVDEAYRLFEKML-DAGHNANPV--VYTSLIRNFFIHGRKEDGHKVFK 383

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++   CK D    N  M      G   K   I+E +       D  +Y ++I  L K+G
Sbjct: 384 ELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAG 443

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +      +F  MK++ F      + ++VD   K+G++  + ++  EM+    +P+   Y 
Sbjct: 444 QARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYG 503

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           ++++  AK  +LD A  L++E +  G   N  L++ +I+   K G++D A  I  +M + 
Sbjct: 504 AIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 563

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   T++ LL+    + +++ A+  + SM      P   TY+ L+  L + +  + A
Sbjct: 564 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKA 623

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL-RFMGSSGI 545
                +M+  G   +V     ++  + K G++  A     RF  + GI
Sbjct: 624 FVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI 671



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 143/319 (44%), Gaps = 35/319 (10%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +  +L ++ RLD A+     M+   FRP+F+ +  L+ ++ +A R + ++++  +MQ  G
Sbjct: 16  LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 75

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           +     ++ +L+ + A+ G++  AL L DE++ +   P+  L+ + I+   K+G +D+A 
Sbjct: 76  YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAC 135

Query: 431 SIFTDMERAGFLPTPSTYSCLL-----------------EMHA----------------- 456
             F +++  G  P   +Y+ ++                 +M A                 
Sbjct: 136 KFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 195

Query: 457 -SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
            S+G+ + A KL   +   G  P + ++ ++LT L K++ VD A  +   MK        
Sbjct: 196 GSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSS 255

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           + + ++ +    G V+ A R L  M  + +  N   V  + +   K    E A  + E+ 
Sbjct: 256 TYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESA 315

Query: 576 VESAAKVDLVLYTSVLAHL 594
            +     D V Y S++  L
Sbjct: 316 SQRGCNPDCVTYCSLIDGL 334



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 128/283 (45%), Gaps = 8/283 (2%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAK 247
           R   ++P    Y +L   L ++    G       + H   + G +L + AYN V+    K
Sbjct: 421 RSYGFLPDVRSYSILIHGLTKA----GQARETSNIFHAMKQQGFALDARAYNAVVDGFCK 476

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
           + K+  +Y   +++ +   +    +Y  ++          +A+ ++E  +     L+   
Sbjct: 477 SGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVL 536

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  +I    K GR+D A  + +EM ++   P+   + SL+D++ KA  ++ ++  +  M+
Sbjct: 537 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK 596

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
                P+   Y  LI    +  K + A   W +M+  G  PN   +T +I   AK G + 
Sbjct: 597 EMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNIT 656

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
            A S+F   +  G +P  ++++ L+E  +++   + AM+ Y +
Sbjct: 657 DAYSLFERFKANGGIPDAASFNALIEGMSNA---NRAMEAYQT 696



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 87/165 (52%)

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
           A L  ++ +A RLD ++     M+    RP+   Y  LI + A+A + + AL L  +M+ 
Sbjct: 14  ADLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQE 73

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G+     LFT ++ + A+ G++  A+++  +++ +   P    Y+  ++    +G VD 
Sbjct: 74  VGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDM 133

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           A K ++ + + GL+P   +YT+++ +L K   +  A ++  +M+ 
Sbjct: 134 ACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEA 178


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 169/371 (45%), Gaps = 5/371 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           ND   +   F W   Q  Y    + Y ++ D+L + + FD M  L ++MV      G+  
Sbjct: 144 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVE---VGGLMS 200

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
                +V++ LA A +   +   F K+       DT++ NVL+     +    +A  +++
Sbjct: 201 LMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQ 260

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            + +G    D +++  ++    K+  L  A+   +EMK+  F PS   + SLV++     
Sbjct: 261 EL-RGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEK 319

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
              T   +  EM+     P+   Y  L+ +  KAG+   AL  +D+++  G  P+   + 
Sbjct: 320 DFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYN 379

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    ++G+L+ A S+  +M   G  P  +T++ L+       Q ++A+KL   M   
Sbjct: 380 SLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQ 439

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
              P + TYT LL L  KR+ V +   ++  M     S D S   +L+ ++ ++G V  +
Sbjct: 440 SCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQS 499

Query: 534 LRWLRFMGSSG 544
             +L  M S G
Sbjct: 500 CLFLEEMVSKG 510


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 153/326 (46%), Gaps = 7/326 (2%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           T ++N+++    + G P +A E+   M +     +  TY  +I      GR+ AA+ + +
Sbjct: 488 TTTFNIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMR 543

Query: 330 EMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAK 387
           EM+ER    P+   + +++    K GR+D ++KV+ EM   G  +P A MY +LI  Y  
Sbjct: 544 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 603

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            GKLDTAL   D M   G       + +++ +    G+   A  +  +M   G  P   T
Sbjct: 604 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 663

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+  H   G V  A++++ +M+  G+R  + TYTAL+  L+K+  V    K+  E  
Sbjct: 664 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV 723

Query: 508 TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G   D+   + L+  +   G++D A   +  M    I  ++     L          +
Sbjct: 724 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 783

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLA 592
            A+ L++   E   + DLV Y ++++
Sbjct: 784 EARKLIDEMTERGIQPDLVTYNTLIS 809



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 152/337 (45%), Gaps = 2/337 (0%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L + R  + +    P    Y  +     +    D  + +FDEM+        ++   YN
Sbjct: 538 ALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM--YN 595

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I       KL+ +     ++++    +   +YN+L+      G   +A+E+ E M   
Sbjct: 596 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 655

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             + D  TY ++I    K G +  A+++F+ M  R  R +   + +L+ ++ K G++  +
Sbjct: 656 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQET 715

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            K++ E    G RP   +Y +LI S++ +G +D A  +  EM      P+   +  ++  
Sbjct: 716 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRG 775

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
               G++D A  +  +M   G  P   TY+ L+  ++  G V  A+++ N M + G  P 
Sbjct: 776 LCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPT 835

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           L TY AL+  L K    D A  ++ EM   G + D S
Sbjct: 836 LLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 872



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 5/276 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
            D  L   D MV    + G+++  + YN ++  L    +   +Y   +++       D  
Sbjct: 607 LDTALLYRDRMV----ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 662

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN+L+     +G   KA EI+E+M +        TY  +I +L+K G++    KLF E 
Sbjct: 663 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 722

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             R  RP   ++ +L++S   +G +D + ++  EM+     P    Y +L+      G++
Sbjct: 723 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 782

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D A +L DEM   G +P+   +  +I  ++  G +  A+ I  +M   GF PT  TY+ L
Sbjct: 783 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 842

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           ++    +GQ D A  +   M   G+ P  STY +L+
Sbjct: 843 IQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 878


>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
 gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 182/387 (47%), Gaps = 9/387 (2%)

Query: 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY 238
           T+L +F WAK Q+ YV     Y ++ D+L + + F  M  + +EM   +  NG   FS  
Sbjct: 81  TALGVFIWAKNQTGYVHTPRLYDLVVDILGKCKKFGIMWKVVNEM---NELNGQVSFSTM 137

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           + V++ LA +   +      + +     K DT + N++M     +G    A+ ++    K
Sbjct: 138 SIVVRRLASSGMYKDVIDVLRGLEKYRVKKDTVALNMVMHALAKQGGAKDAYSVFLEF-K 196

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              +LD  ++ ++I    ++  LD A K  +EM++  FRP  + +   + +  K      
Sbjct: 197 DSITLDSHSFNILIHGYCEARMLDDARKTMEEMEKHGFRPDASSYTCFIKAYCKQKDFRN 256

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
              +  EM   G  P    Y   I +  KA K++ AL ++++M     +P+   F+ +I 
Sbjct: 257 VEVILNEMGEKGCEPDVIAYSIYIRALGKARKINEALEVYEKMNKNSCKPDAKFFSTLIY 316

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
              +SG+L+ A  +F DME  G      TY+ ++    ++ Q +SA+KL   M     +P
Sbjct: 317 VLGRSGRLNDAWYVFEDMENHGVSRDLWTYNAMIYHACANRQGNSALKLLERMEVNSCKP 376

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWL 537
            L TY  LL +  K K + V   +L  M      +D+S   +L+  + + G ++HA  + 
Sbjct: 377 DLETYQPLLKMCCKMKDMKVLKFLLSHMFNNNVRIDLSTYALLIRELAESGKLEHACFFF 436

Query: 538 RFMGSSGI----RTNNFIVRQLFESCM 560
           +    +GI    RT   ++++L ++ M
Sbjct: 437 QDAVLNGIVPKDRTYEILLKELGQNNM 463


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 175/394 (44%), Gaps = 4/394 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L   L + +     L L   M     +  + +  AY  VI  L +  +L+ +Y  F 
Sbjct: 173 YTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVV-AYTTVINGLLREGQLDKAYSLFD 231

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +LD     D  +Y+ +++         KA +++  M K     D   Y  ++     SG
Sbjct: 232 AMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSG 291

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +   AI +F++M      P    + +L+D + K G+   + K++  +   GH+P +  Y 
Sbjct: 292 KPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYG 351

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +L+  YA  G L     L D M   G +    +F MI+ ++AK  K+D A+ +F++M + 
Sbjct: 352 TLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQ 411

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P    Y  +L++  ++G+VD A+  +NS+ S GL P +  +T L+  L      D  
Sbjct: 412 GLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKV 471

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            ++  EM   G  +D    + +M  + K G V  A      M   GI  N      L + 
Sbjct: 472 EELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDG 531

Query: 559 -CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            C+   + E+ K LL   V +  K   V Y +++
Sbjct: 532 YCLDGKMDEAMK-LLGVMVFNGVKPSDVTYNTII 564



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 134/285 (47%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++ YL K  K   +   F  ++    K D+ +Y  L+  +  +G   +  ++ + M 
Sbjct: 315 YTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMM 374

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K    L    + +++ + AK  ++D A+ +F  M+++   P    + +++D +  AGR+D
Sbjct: 375 KKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVD 434

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++  +  ++  G  P+  ++ +LI       K D    L  EM   G   +   F  I+
Sbjct: 435 DALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIM 494

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  K G++  A ++F  M R G  P  +TY+ L++ +   G++D AMKL   M   G++
Sbjct: 495 GNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVK 554

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           P   TY  ++   ++   ++    +L EM   G +  +   ++L+
Sbjct: 555 PSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLL 599



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 131/325 (40%), Gaps = 39/325 (12%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           +TY ++I    + GRLD A      +     R S  +F+ L+  +    R   +M + + 
Sbjct: 100 ATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLR 159

Query: 366 MQ---GC-------------------------------GHRPSAPM----YVSLIESYAK 387
                GC                                H+   P+    Y ++I    +
Sbjct: 160 RMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLR 219

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            G+LD A  L+D M   G  P+   ++ II + +K+  +D A  +FT M + G +P    
Sbjct: 220 EGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIM 279

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+  + SSG+   A+ ++  M   G+ P + TYTAL+  L K      A KI   + 
Sbjct: 280 YTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLV 339

Query: 508 TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G+  D +    L+  Y  +G++      L  M   G++  + I   +  +  K+   +
Sbjct: 340 KRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVD 399

Query: 567 SAKPLLETYVESAAKVDLVLYTSVL 591
            A  +     +     D+V Y +VL
Sbjct: 400 EALLVFSNMRQQGLNPDIVNYGTVL 424



 Score = 45.4 bits (106), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 58/303 (19%), Positives = 114/303 (37%), Gaps = 48/303 (15%)

Query: 324 AIKLFQEMKE---RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS----AP 376
           AI LF  M      +  P+   +  ++    + GRLD +      +   G R S    +P
Sbjct: 80  AISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSP 139

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +   L +    +  +D  LR   E+   G +P+   +T++++          A+ +   M
Sbjct: 140 LLKGLCDRRRTSDAMDIVLRRMPEL---GCKPDLFSYTILLKGLCDDKTSQQALDLLHIM 196

Query: 437 -ERAGFLPTPS-TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            +  G  P     Y+ ++      GQ+D A  L+++M   G  P + TY+++++ L+K +
Sbjct: 197 ADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQ 256

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +D A ++   M   G   D +  + ++  Y   G    A+   + M   G+        
Sbjct: 257 AMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEP------ 310

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
                                        D+V YT+++ +L +       R +   L   
Sbjct: 311 -----------------------------DVVTYTALMDYLCKNGKSTEARKIFDSLVKR 341

Query: 614 KHK 616
            HK
Sbjct: 342 GHK 344


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 164/357 (45%), Gaps = 3/357 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ES 295
           AYN V+  L+ A  L  +      +L      +  +YN+L+     +G   +A  +  + 
Sbjct: 122 AYNAVLLALSDA-SLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDD 180

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M    C+ +  TY  ++ +  ++G +DAA +L   M+E   RPS   F ++V+ + KAGR
Sbjct: 181 MRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGR 240

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           ++ + K++ EM   G  P    Y +L+  Y KAG L  AL ++ EM   G  P+   FT 
Sbjct: 241 MEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTS 300

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I +  ++G L+ A+++   M   G      T++ L++    +G +D A+     M    
Sbjct: 301 LIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECR 360

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHAL 534
           ++P +  Y  L+    K   +D A +++ EM+  G   D V+ S +L  Y K G  D A 
Sbjct: 361 IQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAF 420

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              R M   G+  +      L     +      A  L E  ++   + D   YT+++
Sbjct: 421 ELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLI 477



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 135/285 (47%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N V+  L KA ++E +   F ++       D  SYN L++ +   G  ++A  ++  M 
Sbjct: 228 FNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMA 287

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D  T+  +I ++ ++G L+ A+ L  +M+ER  R +   F +L+D   + G LD
Sbjct: 288 QKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLD 347

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++    EM+ C  +PS   Y  LI  Y K G++D A  L  EM   G +P+   ++ I+
Sbjct: 348 DALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTIL 407

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K G  D A  +   M + G +P   TYS L+       ++  A +L+  M   GL+
Sbjct: 408 SGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQ 467

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           P   TYT L+    K   V  A  +  EM   G   DV    VL+
Sbjct: 468 PDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLI 512



 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 161/336 (47%), Gaps = 1/336 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++    +A +++ +      + +   +    ++N ++      G    A ++++ M 
Sbjct: 193 YNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMA 252

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +   + DG +Y  ++    K+G L  A+ +F EM ++   P    F SL+ +M +AG L+
Sbjct: 253 REGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLE 312

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  +M+  G R +   + +LI+ + + G LD AL    EMR    +P+   + ++I
Sbjct: 313 RAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLI 372

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K G++D A  +  +ME  G  P   TYS +L  +   G  DSA +L   M   G+ 
Sbjct: 373 NGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVV 432

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P   TY++L+  L + + +  A ++  +M  +G   D  + + ++  + K+G+V  AL  
Sbjct: 433 PDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSL 492

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
              M   G+  +      L +   K+A  + A+ LL
Sbjct: 493 HDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLL 528



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 156/345 (45%), Gaps = 1/345 (0%)

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
           + C  +  +YN L+  F   G    A  +   M +G       T+  ++  L K+GR++ 
Sbjct: 184 AGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMED 243

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A K+F EM      P    + +LV    KAG L  ++ V+ EM   G  P    + SLI 
Sbjct: 244 ARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIH 303

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           +  +AG L+ A+ L  +MR  G R N   FT +I+   ++G LD A+    +M      P
Sbjct: 304 AMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQP 363

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
           +   Y+ L+  +   G++D A +L + M + G++P + TY+ +L+   K    D A ++ 
Sbjct: 364 SVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELN 423

Query: 504 LEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            +M   G   D ++ S ++    ++  +  A      M   G++ + F    L +   K 
Sbjct: 424 RKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKE 483

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
              + A  L +  ++     D+V Y+ ++  L +    +  + L+
Sbjct: 484 GNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLL 528



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 135/289 (46%), Gaps = 5/289 (1%)

Query: 219 LFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +FDEM  +  + +G+S    YN ++    KA  L  +   F ++       D  ++  L+
Sbjct: 247 MFDEMAREGLTPDGVS----YNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLI 302

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                 G   +A  +   M +    ++  T+  +I    ++G LD A+   +EM+E   +
Sbjct: 303 HAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQ 362

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           PS   +  L++   K GR+D + ++  EM+  G +P    Y +++  Y K G  D+A  L
Sbjct: 363 PSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFEL 422

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
             +M   G  P+   ++ +I    +  +L  A  +F  M + G  P   TY+ L++ H  
Sbjct: 423 NRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCK 482

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            G V  A+ L++ M   G+ P + TY+ L+  L+K      A ++L ++
Sbjct: 483 EGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL 531



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 163/366 (44%), Gaps = 27/366 (7%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L++F EM        +  F++   +I  + +A  LE +     ++ +   +++  ++  L
Sbjct: 280 LAVFAEMAQKGVVPDVVTFTS---LIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTAL 336

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGST--YELMIPSLAKSGRLDAAIKLFQEMKER 334
           +  F   G    A    + M   EC +  S   Y ++I    K GR+D A +L  EM+ +
Sbjct: 337 IDGFCRNGFLDDALLAMKEMR--ECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAK 394

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
             +P    +++++    K G  D++ ++  +M   G  P A  Y SLI    +  +L  A
Sbjct: 395 GMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDA 454

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             L+++M   G +P+   +T +I+ H K G +  A+S+  +M + G LP   TYS L++ 
Sbjct: 455 CELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDG 514

Query: 455 HASSGQVDSAMKL---------------YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
            + S +   A +L               Y ++          +  ALL   + + L++ A
Sbjct: 515 LSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQA 574

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF----IVRQ 554
            K+   M    + +D S   VL+  + + G++  AL + + +   G   N+     +VR 
Sbjct: 575 DKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRG 634

Query: 555 LFESCM 560
           LFE  M
Sbjct: 635 LFEEGM 640



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/263 (18%), Positives = 110/263 (41%), Gaps = 16/263 (6%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFK 259
           V+ ++VL       G +    E++H+    G+      Y+ ++    K    + ++   +
Sbjct: 365 VVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNR 424

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+L      D  +Y+ L+     +     A E++E M +     D  TY  +I    K G
Sbjct: 425 KMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEG 484

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV---------------YM 364
            +  A+ L  EM ++   P    ++ L+D + K+ R   + ++               Y 
Sbjct: 485 NVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYE 544

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
            +  C         V+L++ ++  G ++ A +++  M    ++ +  +++++I  H + G
Sbjct: 545 ALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGG 604

Query: 425 KLDIAMSIFTDMERAGFLPTPST 447
            +  A+S    + R GF P  ++
Sbjct: 605 NIMKALSFHKQLLRCGFSPNSTS 627



 Score = 46.6 bits (109), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 15/237 (6%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I+ L +  +L  +   F+K+L    + D  +Y  L+     +G   KA  +++ M 
Sbjct: 438 YSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMI 497

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS---------------FNI 342
           K     D  TY ++I  L+KS R   A +L  ++   +  P                F  
Sbjct: 498 KKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKS 557

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
             +L+      G ++ + KVY  M     +    +Y  LI  + + G +  AL    ++ 
Sbjct: 558 VVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLL 617

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
             GF PN      ++    + G    A ++  ++     L    T   L++++   G
Sbjct: 618 RCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLNCCSLADAETSKALIDLNRKEG 674



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 18/210 (8%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y  L D   +  +    LSL DEM+    K  +     Y+ +I  L+K+ + + +
Sbjct: 468 PDEFTYTTLIDGHCKEGNVQKALSLHDEMI---KKGVLPDVVTYSVLIDGLSKSARTKEA 524

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTL---------------FLNKGLPYKAFEIYESMEKG 299
                K+   D   D   Y  LM                 F  KGL  +A ++Y+SM   
Sbjct: 525 QRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDR 584

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
              LDGS Y ++I    + G +  A+   +++    F P+     SLV  + + G    +
Sbjct: 585 HWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEA 644

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
             V  E+  C     A    +LI+   K G
Sbjct: 645 DNVIQELLNCCSLADAETSKALIDLNRKEG 674


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 2/308 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  L K+ +LE +   F++       +D  +Y+ LM  F   G   KA E++ +M+
Sbjct: 304 YNLLIA-LCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQ 362

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K  C  D   Y ++I  L K G++D A++L ++M  +   P    +  ++D +   GR +
Sbjct: 363 KAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYE 422

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +   +  M+   H P    Y +L+    K  + D A  L+DEM+     P+   F  +I
Sbjct: 423 KAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLI 482

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           ++ AK+G+++ A+     + + G  P    Y+ L+     SGQVD   +L+  M      
Sbjct: 483 DTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCF 542

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK-DGSVDHALRW 536
           P   TYT L+   ++R    +A ++L EM   G++  ++  +VL+  +   G V+ A   
Sbjct: 543 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTL 602

Query: 537 LRFMGSSG 544
            + M + G
Sbjct: 603 FKEMIAKG 610



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 133/259 (51%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  L K  K++ +    + +       D ++YN+++ +  + G   KA+  +  M+
Sbjct: 373 YNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMK 432

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           + + S D  TY  ++  L K  R D A  LF EM+     P    F +L+D++ KAGR++
Sbjct: 433 RRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRME 492

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +++    +   GH P++ +Y +LI  + ++G++D    L+ +M      P+   +T+++
Sbjct: 493 DALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILV 552

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              ++ G   +AM +  +M R G  P  +TY+ L+   + +GQV+ A  L+  M + G  
Sbjct: 553 LGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFN 612

Query: 478 PGLSTYTALLTLLAKRKLV 496
           P + TY+AL  L    K V
Sbjct: 613 PDMQTYSALPNLSTPNKSV 631



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 5/320 (1%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKV 261
           L   L +S+  +  L+LF E    + + G+ L    Y+ ++    KA +   +   F  +
Sbjct: 306 LLIALCKSKQLEEALTLFQE----AEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNM 361

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
             + C  DT  YNVL++    +G   +A E+ E M +     D  TY ++I  L+  GR 
Sbjct: 362 QKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRY 421

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           + A   F  MK R   P    + +L++ + K  R D +  ++ EMQ     P    + +L
Sbjct: 422 EKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTL 481

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I++ AKAG+++ AL     +   G  PN  ++  +I    +SG++D    +F DM     
Sbjct: 482 IDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSC 541

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   TY+ L+   +  G    AM+L   M   G  P L+TY  L+  L+    V+ A  
Sbjct: 542 FPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYT 601

Query: 502 ILLEMKTMGYSVDVSASDVL 521
           +  EM   G++ D+     L
Sbjct: 602 LFKEMIAKGFNPDMQTYSAL 621



 Score = 99.4 bits (246), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 98/490 (20%), Positives = 192/490 (39%), Gaps = 71/490 (14%)

Query: 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM----- 223
           QA     D D ++ +    +R ++  P    +      L E R  +  ++LFD+M     
Sbjct: 61  QAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCD 120

Query: 224 -----------VHDSSKNG-----ISLFS-------------AYNRVIQYLAKADKLEMS 254
                      +    K G     + +F              +++ ++ +L K  +   +
Sbjct: 121 CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDA 180

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM--- 311
              F+++L +  K D    N L+      G+  +A  +   M    C+ D  TY ++   
Sbjct: 181 LAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNA 240

Query: 312 --------------------------------IPSLAKSGRLDAAIKLFQEMKERNFRPS 339
                                           I    + GRL  A +LF+    +   P 
Sbjct: 241 HCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPD 300

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              +  L+ ++ K+ +L+ ++ ++ E +  G       Y  L++++ KAG+   AL ++ 
Sbjct: 301 VFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFY 359

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            M+ AG  P+  ++ ++I    K GK+D A+ +  DM R G +P   TY+ ++++ +S G
Sbjct: 360 NMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCG 419

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           + + A   +  M      P + TY  LL  L K +  D A  +  EM+      D++   
Sbjct: 420 RYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFG 479

Query: 520 VLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
            L+    K G ++ AL     +   G   N++I   L     ++   +    L +  +E 
Sbjct: 480 TLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIEC 539

Query: 579 AAKVDLVLYT 588
           +   D + YT
Sbjct: 540 SCFPDSITYT 549



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 99/490 (20%), Positives = 199/490 (40%), Gaps = 16/490 (3%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDT 270
           D D  + + D+M   +     ++  A+   + +L +  ++E +   F  + ++ DC  D 
Sbjct: 68  DLDAAMGMLDDMRRGNFCQPDTV--AFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDV 125

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            +YN L+  +   G   +A +++  + ++G C  +  +++ ++  L K  R   A+ +FQ
Sbjct: 126 VAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQ 185

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EM     +   N+  +L+    + G L  + ++   M        A  Y  L+ ++ +AG
Sbjct: 186 EMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAG 245

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++       +  R  G   +   +  II+   + G+L  A  +F        +P   TY+
Sbjct: 246 QMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYN 305

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+ +   S Q++ A+ L+      G+   + TY+ L+    K      A ++   M+  
Sbjct: 306 LLIAL-CKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKA 364

Query: 510 GYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGI----RTNNFIVRQLFESCMKNAL 564
           G   D    +VL+  + K G VD AL  L  M   GI    RT N ++  +  SC +   
Sbjct: 365 GCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVI-DVLSSCGR--- 420

Query: 565 YESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGL 624
           YE A              D+V Y ++L  L + +       L   + A K        G 
Sbjct: 421 YEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGT 480

Query: 625 FTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYE 684
                 +   +   + +    +  ++      Y  N L++     GQ+++   +++   E
Sbjct: 481 LIDTLAKAGRMEDALEQSARLV--KMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIE 538

Query: 685 NKLFPKAIVF 694
              FP +I +
Sbjct: 539 CSCFPDSITY 548



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 382 IESYAKAGKLDTALRLWDEMRIAGF-RPNFGLFTMIIESHAKSGKLDIAMSIFTDM-ERA 439
           I+++ +AG LD A+ + D+MR   F +P+   FT  +    +  +++ AM++F DM E  
Sbjct: 60  IQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETC 119

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-LRPGLSTYTALLTLLAKRKLVDV 498
              P    Y+ L+  +  +G  D A+ ++  +   G  +P   ++  L+  L K      
Sbjct: 120 DCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATD 179

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A  +  EM   G   DV+  + L+    + G +  A R L  M +     + F    L  
Sbjct: 180 ALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVN 239

Query: 558 S-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
           + C    ++E A   +E        +  V Y  ++   +RC
Sbjct: 240 AHCRAGQMHEVAS-FMELARHDGCALSAVNYNFIIQGFIRC 279



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 6/234 (2%)

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++  Y  +   G    A    ++++   K G+ +    L  E+R  G   +    T  I+
Sbjct: 2   ALATYKHLLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQ 61

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH--ASSGQVDSAMKLYNSM-TSAG 475
           +  ++G LD AM +  DM R  F   P T +    MH      +V+ AM L++ M  +  
Sbjct: 62  AFGRAGDLDAAMGMLDDMRRGNFCQ-PDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCD 120

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS-DVLMVYI-KDGSVDHA 533
             P +  Y  L+    K    D A  +   +K  G     + S D L++++ K      A
Sbjct: 121 CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDA 180

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           L   + M  +G++ +  +   L     +  +   A+ LL      A   D   Y
Sbjct: 181 LAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTY 234


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 207/464 (44%), Gaps = 14/464 (3%)

Query: 128 PFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDT-SLSLFRW 186
           P +  S  AK+V  +   +  P + + LD L        + + LK ++++   +L+ FRW
Sbjct: 95  PPVGISEAAKMVCRIVSTQPEPRIASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFRW 154

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
           A+RQ  +    E +  L + L + + F  + SL + M       G+     +  +++  A
Sbjct: 155 AERQEGFSYTAEGFHNLIEALGKIKQFKLVWSLVETM----RCRGLLSKDTFKLIVRRYA 210

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-KGECSLDG 305
           +A K++ +   F+K+     K +   YN L+          KA  IY+ M+ KG+   D 
Sbjct: 211 RARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDL 270

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            TY +++        L     ++QEM +   RP    +  L+ +  K+G+ D ++KV+ E
Sbjct: 271 KTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYE 330

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M+  G  PS  +Y  LI       +LD AL+ +++ + +GF         ++ ++ ++ K
Sbjct: 331 MEASGCMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASK 390

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
            + A  +  +M      P   TY  +L     S + + A  ++  M   G  P L+TYT 
Sbjct: 391 FEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTM 450

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK-DGSVDHALRWLRFMGSSG 544
           ++ +      VD+A  +  +M   G    +     L+  +  +  ++ A  + + M   G
Sbjct: 451 MVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKG 510

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
           IR       QLF S +K AL E  +  L    E A+K+D +  T
Sbjct: 511 IRPPG----QLF-SNLKEALVEGGRISLAQ--EMASKLDAIRKT 547



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 107/260 (41%), Gaps = 4/260 (1%)

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           S  + A ++ ++  AG L  +   + E Q  G   +A  + +LIE+  K  +      L 
Sbjct: 130 SPELVAEVLKNLSNAGMLALAFFRWAERQE-GFSYTAEGFHNLIEALGKIKQFKLVWSLV 188

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           + MR  G       F +I+  +A++ K+  A+  F  M   G     S Y+ L++  + S
Sbjct: 189 ETMRCRGLLSK-DTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKS 247

Query: 459 GQVDSAMKLYNSMTSAG-LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            QV  A  +Y  M   G   P L TYT L+      K + +   +  EM   G   DV A
Sbjct: 248 KQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVA 307

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
             +L+  + K G  D A++    M +SG   +  +   L          + A    E Y 
Sbjct: 308 YGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEQYK 367

Query: 577 ESAAKVDLVLYTSVLAHLVR 596
           +S   +++    +V+    R
Sbjct: 368 KSGFPMEVPTCNAVVGAYCR 387


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 158/326 (48%), Gaps = 1/326 (0%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K D   +N+LM  +       +A   +  M+K +C    +++ +++ + ++ G+L+ A +
Sbjct: 98  KPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAER 157

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           +  EMKE N  P    + + ++ + K+G    +  V+ EMQ  G  P+   +  +I  Y 
Sbjct: 158 VLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYG 217

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           KA     A  L+  MR A   P+   +T +I +HA+ G    A  IF +++  GF+P   
Sbjct: 218 KAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIY 277

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TY+ LLE ++  G    A +++ +M  AG++    +Y  L+    +  L+  A  I   M
Sbjct: 278 TYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSM 337

Query: 507 KTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
           K +G+   + +  +L+  ++K G V  A  ++R + S G+  + F+   L  +   +   
Sbjct: 338 KKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRM 397

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVL 591
           +  + L E+   S  K D++   +++
Sbjct: 398 DKMESLYESMQGSVCKPDIITLNTLI 423



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 172/406 (42%), Gaps = 14/406 (3%)

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
           L  AY R  Q+     + E ++   KK     C     S+NVLM  +   G   +A  + 
Sbjct: 107 LMDAYGRTKQW----TEAENTFHLMKKF---QCLPTETSFNVLMAAYSRGGQLERAERVL 159

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
             M++  CS    TY   +  L KSG    A  +F+EM+ R   P+ N F  +++  GKA
Sbjct: 160 HEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKA 219

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
                +  ++  M+     PS   Y +LI ++A+ G    A  ++ E++  GF P+   +
Sbjct: 220 HHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTY 279

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             ++E++++ G    A  +F  M  AG      +Y+ L++    +G +  A  +Y+SM  
Sbjct: 280 NALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKK 339

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDH 532
            G +P + ++  LL+   K   V  A   +  +++MG   D    + +L  Y   G +D 
Sbjct: 340 VGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDK 399

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
                  M  S  + +   +  L     +    E A+ +  +        D++ +TS++ 
Sbjct: 400 MESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMG 459

Query: 593 -----HLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQ 633
                 L R      ++ L+A     +  A   L     GPEQ K+
Sbjct: 460 AYSKRKLYRKCVSVYQKMLIAGCIPDRATAKVLLSSC-RGPEQVKE 504



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 153/328 (46%), Gaps = 3/328 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           PG   Y    +VLN+S  +     +F EM +      ++ F+    +      + K E  
Sbjct: 169 PGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHL 228

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +   +K L   C     +Y  L+     +G   +A EI+  ++      D  TY  ++ +
Sbjct: 229 FQSMRKAL---CPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEA 285

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            ++ G    A ++F+ M E   +     +  L+D+ G+AG +  +  +Y  M+  G +P+
Sbjct: 286 YSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPT 345

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              ++ L+ ++ KAG++  A      +   G  P+  +F  ++ ++  SG++D   S++ 
Sbjct: 346 MKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYE 405

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M+ +   P   T + L+ ++A  G ++ A +++NS+ S G  P + ++T+L+   +KRK
Sbjct: 406 SMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRK 465

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLM 522
           L      +  +M   G   D + + VL+
Sbjct: 466 LYRKCVSVYQKMLIAGCIPDRATAKVLL 493



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 139/305 (45%), Gaps = 7/305 (2%)

Query: 305 GSTYELM--IPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMK 361
           GS  +LM  +    +  +  +AI +++ + + + F+P    F  L+D+ G+  +   +  
Sbjct: 63  GSWEDLMETVAEFRRQRKWRSAIVIYEWILQGSMFKPDVGCFNMLMDAYGRTKQWTEAEN 122

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
            +  M+     P+   +  L+ +Y++ G+L+ A R+  EM+ +   P    +   +E   
Sbjct: 123 TFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLN 182

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           KSG   +A  +F +M+  G  P  +T++ ++ ++  +     A  L+ SM  A   P L 
Sbjct: 183 KSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLF 242

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFM 540
           TYTAL+   A+      A +I  E++++G+  D+   + L+  Y + G    A      M
Sbjct: 243 TYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETM 302

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL---VLYTSVLAHLVRC 597
             +G++ ++     L ++  +  L   A+ + ++  +   K  +   +L  S      R 
Sbjct: 303 LEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRV 362

Query: 598 QDEQN 602
            D +N
Sbjct: 363 TDAEN 367


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 192/453 (42%), Gaps = 45/453 (9%)

Query: 190 QSWYV-------PGDECYVMLFDVLNESRDFDGMLSLF-DEMVHDSSKNGISLFSAYNRV 241
           Q W++       P +  Y  L D L +  +F+G  +L+ D +    +K+ I+    +N +
Sbjct: 458 QIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT----FNTM 513

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           I  L K  K+  +   F K+ D  C  D  +Y  L+  +       +AF++  +ME+   
Sbjct: 514 ISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPI 573

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           S     Y  +I  L KS RL     L  EM  R   P+   + +L+D   K G LD +  
Sbjct: 574 SPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFS 633

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF--------------- 406
            Y EM   G   +  +  +++    + G++D A  L  +M   GF               
Sbjct: 634 SYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYA 693

Query: 407 -----------------RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
                             PN  ++ + I    K+GK+D A   F+ +   GF+P   TY 
Sbjct: 694 AIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYC 753

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+  ++++G VD A +L + M   GL P + TY AL+  L K + VD A ++  ++   
Sbjct: 754 TLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQK 813

Query: 510 GYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G   +V   + L+  Y K G++D A +    M   GI  +      L     K+   E +
Sbjct: 814 GLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERS 873

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
             LL   +++     L+ Y +++   +R  + Q
Sbjct: 874 MKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQ 906



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 120/565 (21%), Positives = 234/565 (41%), Gaps = 33/565 (5%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +  + R  + ++  VP +  Y +L D    +   D  + L DEM+    K  + +   
Sbjct: 313 DEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC-- 370

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            N +I    K  ++  +     +++D + K D+ SYN L+  +  +G   +AF + + M 
Sbjct: 371 -NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 429

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +        TY  ++  L + G  D A++++  M +R   P    +++L+D + K    +
Sbjct: 430 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFE 489

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  ++ ++   G   S   + ++I    K GK+  A  ++D+M+  G  P+   +  +I
Sbjct: 490 GASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 549

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           + + K+  +  A  +   MER    P+   Y+ L+     S ++     L   M   GL 
Sbjct: 550 DGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLT 609

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P + TY AL+    K  ++D A     EM   G S ++     ++  + + G +D A   
Sbjct: 610 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 669

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNAL-YESAKPLLETYVESAAKVDL---VLYTSVLA 592
           ++ M   G   ++       E  +K+ + Y + + + ++  ES     L   ++Y   +A
Sbjct: 670 MQKMVDHGFFPDH-------ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIA 722

Query: 593 HLVRCQDEQNERHLMAILSATKHKAHAFL-CGLFTGPEQRKQPVLSFVREFFHGIDYELE 651
            L +     + R   ++LS        F  C L  G           V E F   D  L 
Sbjct: 723 GLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGN-----VDEAFRLRDEMLR 777

Query: 652 EGAARYFV--NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSV 709
            G     V  N L+N L     ++RA+ ++   ++  LFP  + ++  I           
Sbjct: 778 RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLID---------- 827

Query: 710 GAALIAVMHTLHRFRKRMLYYGVVP 734
           G   I  M    + + +M+  G+ P
Sbjct: 828 GYCKIGNMDAAFKLKDKMIEEGISP 852



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 2/265 (0%)

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R F  S  +F  ++    + G    ++ V+  M  CG  PS     SL+ +  K G+  T
Sbjct: 150 REFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHT 209

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  ++ +M   G  P+  + ++++ +  K GK+D A      ME  G  P   TY  L+ 
Sbjct: 210 AHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLIN 269

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            + S G V++A  +   M+  G+   + TYT L+    K+  +D A K+L  M+     V
Sbjct: 270 GYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALV 329

Query: 514 -DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D  A  VL+  Y + G +D A+R L  M   G++TN FI   L     K      A+ +
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
           +   V+   K D   Y ++L    R
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCR 414



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 7/229 (3%)

Query: 250 KLEMSYCCFKKV---LDSDCKI----DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
           K ++ Y   +K+   LD  CK     +   YN+ +      G    A   +  +      
Sbjct: 687 KSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFV 746

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
            D  TY  +I   + +G +D A +L  EM  R   P+   + +L++ + K+  +D + ++
Sbjct: 747 PDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRL 806

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           + ++   G  P+   Y +LI+ Y K G +D A +L D+M   G  P+   ++ +I    K
Sbjct: 807 FHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCK 866

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            G ++ +M +   M +AG       Y  L++ +  SG++    KLY+ M
Sbjct: 867 HGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMM 915



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 36/280 (12%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           +S N L+   +  G  + A  +Y+ M +     D     +M+ +  K G++D A    ++
Sbjct: 192 RSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKK 251

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK--- 387
           M+     P+   + SL++     G ++ +  V   M   G   +   Y  LI+ Y K   
Sbjct: 252 MENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCK 311

Query: 388 ---------------------------------AGKLDTALRLWDEMRIAGFRPNFGLFT 414
                                             GK+D A+RL DEM   G + N  +  
Sbjct: 312 MDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICN 371

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I  + K G++  A  + T M      P   +Y+ LL+ +   G    A  L + M   
Sbjct: 372 SLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE 431

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           G+ P + TY  LL  L +    D A +I   M   G + D
Sbjct: 432 GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPD 471



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 124/293 (42%), Gaps = 2/293 (0%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           + +++++    + G    A+ +F  M +    PS     SL++++ K G   T+  VY +
Sbjct: 157 TVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQ 216

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G  P   M   ++ ++ K GK+D A     +M   G  PN   +  +I  +   G 
Sbjct: 217 MIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGD 276

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT-SAGLRPGLSTYT 484
           ++ A  +   M   G      TY+ L++ +    ++D A K+   M   A L P    Y 
Sbjct: 277 VEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYG 336

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS 543
            L+    +   +D A ++L EM  +G   ++   + L+  Y K G +  A   +  M   
Sbjct: 337 VLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDW 396

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            ++ +++    L +   +      A  L +  ++   +  ++ Y ++L  L R
Sbjct: 397 NLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 128/273 (46%), Gaps = 1/273 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           ++    K  K++ +    KK+ +   + +  +Y+ L+  +++ G    A  + + M +  
Sbjct: 232 MVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKG 291

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTS 359
            S +  TY L+I    K  ++D A K+ + M+E     P    +  L+D   + G++D +
Sbjct: 292 VSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDA 351

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           +++  EM   G + +  +  SLI  Y K G++  A  +   M     +P+   +  +++ 
Sbjct: 352 VRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDG 411

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + + G    A ++   M + G  PT  TY+ LL+     G  D A+++++ M   G+ P 
Sbjct: 412 YCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPD 471

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
              Y+ LL  L K +  + A+ +  ++   G++
Sbjct: 472 EVGYSTLLDGLFKMENFEGASTLWKDILARGFT 504



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY  +I    K G +DAA KL  +M E    PS   +++L++ + K G ++ SMK+  +M
Sbjct: 821 TYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQM 880

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
              G       Y +L++ Y ++G++    +L+D M I
Sbjct: 881 IKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHI 917


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/459 (20%), Positives = 200/459 (43%), Gaps = 11/459 (2%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           +V++   L++    +  +++  W  R+S + P   CY +L D   + R      + +  +
Sbjct: 139 IVNVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMAL 198

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           +       +     Y  +++    + +L  +     ++  +        YN  +   L  
Sbjct: 199 LEARC---VPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKA 255

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
               KA E+Y+ M+K  C  +  TY LMI    K+ +  +++++F+EMK    +P+   +
Sbjct: 256 RCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTY 315

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +LV++  + G  + + +V+ EMQ  GH P    Y +L+E+Y++AG    A  ++  M  
Sbjct: 316 TALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEH 375

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G  P+   + +++++  ++G    A + F ++++ G  PT  ++  LL  HA SG V  
Sbjct: 376 MGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVAR 435

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK----TMGYSVDVSASD 519
             ++   +  +GLRP      A+L    +   +D   ++   M+     +  + D S  +
Sbjct: 436 CEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYN 495

Query: 520 VLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
           V++  Y + G +D      R + + G+  +         +  +   Y     + E  V++
Sbjct: 496 VMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDA 555

Query: 579 AAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA 617
               D      +LA    C DE+    + AI+ +    A
Sbjct: 556 GCYPDAGTAKVLLAA---CSDERQVEQVKAIVRSMHKDA 591


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 175/400 (43%), Gaps = 4/400 (1%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           C ++L  + +E+R  +  L L   M  D          +Y  VI    K    + +Y  +
Sbjct: 161 CTILLKGLCDENRSQEA-LELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTY 219

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++LD     D  +Y+ ++          KA E+  +M K     +  TY  ++     S
Sbjct: 220 HEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSS 279

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
            +   AI   ++M+     P    + SL+D + K GR   + K++  M   G  P    Y
Sbjct: 280 EQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATY 339

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +L++ YA  G L     L D M   G  P+  +F ++I ++AK  K+D AM +F+ M +
Sbjct: 340 CTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQ 399

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P   TY  ++ +   SG VD AM  +  M   GL P +  YT+L+  L      D 
Sbjct: 400 HGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDK 459

Query: 499 AAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A +++LEM   G  ++ +  + ++  + K+G V  + +    M   G++ N      L +
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLID 519

Query: 558 S-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             C+   + E+ K LL +      K D V Y +++    R
Sbjct: 520 GYCLAGKMDEATK-LLSSMFSVGMKPDCVTYNTLINGYCR 558



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 171/377 (45%), Gaps = 3/377 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++ YL K  +   +   F  +     + D  +Y  L+  +  KG   +   + + M 
Sbjct: 304 YNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMV 363

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D   + ++I + AK  ++D A+ +F +M++    P+   + +++  + K+G +D
Sbjct: 364 RNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVD 423

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +M  + +M   G  P+  +Y SLI S     K D A  L  EM   G   N   F  II
Sbjct: 424 DAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSII 483

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            SH K G++  +  +F  M R G  P   TYS L++ +  +G++D A KL +SM S G++
Sbjct: 484 HSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMK 543

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537
           P   TY  L+    +   +D A  +  EM + G S ++   ++++  +       A + L
Sbjct: 544 PDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603

Query: 538 RFMG--SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            ++G   SG +        +     KN L + A  + +    +  +++   +  ++  L+
Sbjct: 604 -YVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALL 662

Query: 596 RCQDEQNERHLMAILSA 612
           +       + L A LSA
Sbjct: 663 KVGRNDEAKDLFAALSA 679



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 146/326 (44%), Gaps = 7/326 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYESM 296
           Y  VI  L K+  ++ +   F++++D     +   Y  L+          KA E I E +
Sbjct: 409 YGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEML 468

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++G C L+   +  +I S  K GR+  + KLF  M     +P+   +++L+D    AG++
Sbjct: 469 DRGIC-LNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKM 527

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + K+   M   G +P    Y +LI  Y +  ++D AL L+ EM  +G  PN   + +I
Sbjct: 528 DEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNII 587

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++    + +   A  ++  + ++G     STY+ +L     +   D A++++ ++    L
Sbjct: 588 LQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDL 647

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALR 535
           +    T+  ++  L K    D A  +   +   G   DV    ++    I+ G ++    
Sbjct: 648 QLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDD 707

Query: 536 WLRFMGSSGIRTN----NFIVRQLFE 557
               M  +G   N    N IVR+L +
Sbjct: 708 LFLSMEENGCTANSRMLNSIVRKLLQ 733



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 131/354 (37%), Gaps = 43/354 (12%)

Query: 286 PYKAFEIYESMEK---GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +   G+ +    TY ++I    ++GRLD        + ++ FR     
Sbjct: 65  PAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAIT 124

Query: 343 FASLVDSMGKAGRLDTSMKVYM-------------------------------------- 364
           F  L+  +    R   +M + +                                      
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMM 184

Query: 365 -EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            + +G G  P    Y ++I  + K G  D A   + EM      P+   ++ II +  K 
Sbjct: 185 ADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKG 244

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
             +D AM + T M + G +P   TY+ +L  + SS Q   A+     M S G+ P + TY
Sbjct: 245 QAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTY 304

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGS 542
            +L+  L K      A KI   M   G   D++    +L  Y   G++      L  M  
Sbjct: 305 NSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVR 364

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +GI  ++ +   L  +  K    + A  +     +     ++V Y +V+  L +
Sbjct: 365 NGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCK 418



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/365 (20%), Positives = 144/365 (39%), Gaps = 32/365 (8%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    Y  +  +L +S   D  +  F++M+ +     I ++++    +    K 
Sbjct: 398 RQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKW 457

Query: 249 DK-----LEM-----------------SYCCFKKVLDSD----------CKIDTQSYNVL 276
           DK     LEM                 S+C   +V++S+           K +  +Y+ L
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  +   G   +A ++  SM       D  TY  +I    +  R+D A+ LF+EM     
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV 577

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   +  ++  +    R   + ++Y+ +   G +     Y  ++    K    D ALR
Sbjct: 578 SPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALR 637

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++  + +   +     F ++I +  K G+ D A  +F  +   G +P   TYS + E   
Sbjct: 638 MFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLI 697

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G ++    L+ SM   G         +++  L +R  +  A   L  +    +S++ S
Sbjct: 698 EQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLSMIDEKHFSLEAS 757

Query: 517 ASDVL 521
            + +L
Sbjct: 758 TASLL 762



 Score = 41.6 bits (96), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 122/311 (39%), Gaps = 46/311 (14%)

Query: 429 AMSIFTDMERAG---FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           A+S +  M RAG     PT  TY  L+     +G++D       ++   G R    T+T 
Sbjct: 68  AVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTP 127

Query: 486 LLT-LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFM--- 540
           LL  L A ++  D    +L  M  +    DV +  +L+  + D      AL  L  M   
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADD 187

Query: 541 --GSSG--IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             G S   + +   ++   F+    +  Y +   +L+  +      D+V Y+S++A L  
Sbjct: 188 RGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISP----DVVTYSSIIAAL-- 241

Query: 597 CQDEQNERHLMAILSATKHKA-------HAFLCGLFTGPEQRKQPVLSFVREFFHGIDYE 649
           C+ +  ++ +  + +  K+         ++ L G +   EQ K+ +    +    G+   
Sbjct: 242 CKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHG-YCSSEQPKEAIGFLKKMRSDGV--- 297

Query: 650 LEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFP--------------KAIVFD 695
            E     Y  N L++YL   G+   AR ++    +  L P              K  + +
Sbjct: 298 -EPDVVTY--NSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVE 354

Query: 696 QHIAWSLDVRN 706
            H    L VRN
Sbjct: 355 MHALLDLMVRN 365


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 128/560 (22%), Positives = 241/560 (43%), Gaps = 66/560 (11%)

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYESME-------KGECSLDGSTYELMIPS 314
           DS  K +  +YN ++      G+ + +A EI++ M        +G    D  TY  ++ +
Sbjct: 163 DSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRG-IEQDIFTYNTLLDA 221

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           + K G++D A ++  EM  ++  P+   +++++D   KAGRLD ++ ++ EM+       
Sbjct: 222 VCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLD 281

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +L+  YAK G+ + AL +  EM  +G + +   +  ++  + K GK +    +F 
Sbjct: 282 RVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFE 341

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M+     P   TYS L+++++  G    AM+++     AGL+  +  Y+AL+  L K  
Sbjct: 342 EMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNG 401

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
           LV+ A   L EM   G   + V+ + ++  + + G V+ A          G + +N I++
Sbjct: 402 LVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATE-----SEVGDKEDNQIIK 456

Query: 554 ---QLF--ESCMKNALYESAKPLL------ETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
              QL   ++C         + +L          E   K ++V ++++L    RC   ++
Sbjct: 457 IFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFED 516

Query: 603 ERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVL 662
              L+  L    ++ +    GL  G       V    +  F  +  +++   A  F N L
Sbjct: 517 ASMLLEELRLFDNQVYGVAHGLLMG---YGDNVWVQAQSLFDEVK-QMDSSTASAFYNAL 572

Query: 663 LNYLVLMGQINRA---------RCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
            + L   GQ   A         R VW+  + N                LD+  +S GAA 
Sbjct: 573 TDMLWHFGQRRGAQLVVLEGKRRHVWENMWSNS--------------CLDLHLMSSGAAR 618

Query: 714 IAVMHTLHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSSVESPFEVS 763
             V   L   R  +     +P+ + ++TG            L+  I  +L+ + +PF V+
Sbjct: 619 AMVHAWLLNIRSIVFEGHELPQLLSILTGWGKHSKVVGDGALRRAIEALLTGMGAPFRVA 678

Query: 764 KVVLR---APGDSVMEWFKK 780
           K  L    + G  V  W ++
Sbjct: 679 KCNLGRFISTGAVVAAWLRE 698



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 150/331 (45%), Gaps = 9/331 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D + +    D    +  EM     K+ +     Y+ VI   AKA +L+ +   F 
Sbjct: 215 YNTLLDAVCKGGQMDLAFQIMSEM---PRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFN 271

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++  +   +D  SYN L++++   G   +A  + + ME      D  TY  ++    K G
Sbjct: 272 EMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQG 331

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           + +   ++F+EMK     P+   +++L+D   K G    +M+V+ E +  G +    +Y 
Sbjct: 332 KYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYS 391

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL-DIAMSIFTDMER 438
           +LI++  K G +++A+   DEM   G RPN   +  II++  +SG + D   S   D E 
Sbjct: 392 ALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKED 451

Query: 439 AGFLPTPSTYSCLLEMHA-----SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
              +      +     HA        ++   + +++ M    ++P + T++A+L   ++ 
Sbjct: 452 NQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRC 511

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
              + A+ +L E++     V   A  +LM Y
Sbjct: 512 NSFEDASMLLEELRLFDNQVYGVAHGLLMGY 542


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 166/353 (47%), Gaps = 13/353 (3%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
           S+D D    +F+EM    ++N +S    YN++I  L +A +++ +   F ++ D  C  +
Sbjct: 240 SKDVDSAFRVFEEM---PNRNEVS----YNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPN 292

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             +Y  L+     K + +KA  + + M +     D  TY  +I    ++G LD+A +L  
Sbjct: 293 VYTYTALIKGLCRKNV-HKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLS 351

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
            MKER   P    +   +D + K+ R++ + +++  +   G   +  MY  LI+ Y K G
Sbjct: 352 LMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVG 411

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           K+D A  L+++M      PN   F  +I     +G L  A+S+F  M + G  PT  T++
Sbjct: 412 KVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFN 471

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+      G  D A K    M S+G +P   TY A + +      V  A  ++++MK  
Sbjct: 472 ILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEE 531

Query: 510 GYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF----IVRQLFE 557
           G    D + + ++  Y K G    A   L+ M  +    ++     +++QLF+
Sbjct: 532 GVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFD 584



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 111/517 (21%), Positives = 203/517 (39%), Gaps = 70/517 (13%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++SLF   K    Y P    Y  L   L   ++    + L DEM+    +N +     
Sbjct: 275 DEAVSLFVRMKDDCCY-PNVYTYTALIKGLCR-KNVHKAMGLLDEMLE---RNLVPDLIT 329

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    +A  L+ +Y     + +     D ++Y   +          +A  +++S+ 
Sbjct: 330 YNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLT 389

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +   S +   Y ++I    K G++D A  LF++M  +N  P+   F +L+  +  AG L 
Sbjct: 390 EEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLK 449

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ ++ +M   G +P+   +  LI    K G  D A +   +M  +G +P    +   I
Sbjct: 450 EALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFI 509

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E +  +GK+  A  +   M+  G  P   TY+ L++ +   G   SA  +  SM  A   
Sbjct: 510 EVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCE 569

Query: 478 PGLSTYTALLTLLAKRKLV-----------------------------DVAAKILLEMKT 508
           P   T+ +L+  L  ++ V                             D+  ++  EM+ 
Sbjct: 570 PSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEK 629

Query: 509 MGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G + D    + L+  I K  ++  AL+ L  M   GI  +  +   +   C K      
Sbjct: 630 HGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCK------ 683

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLF-T 626
               L+ Y E+A  V+ ++ +     L  C+                      +CGL+  
Sbjct: 684 ----LQKYGEAANIVEDMICSGHSPQLEHCK--------------------TLICGLYEE 719

Query: 627 GPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLL 663
           G  +R   V   +R    G  Y  +E A +  ++ +L
Sbjct: 720 GETERGNSVFKKLR----GCGYNDDEIAWKILIDGML 752



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 103/474 (21%), Positives = 192/474 (40%), Gaps = 62/474 (13%)

Query: 144 RWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVML 203
            W+  P L++ L  +   P   H++    +  D  T+L    W  +   +    + Y  L
Sbjct: 52  NWQNNPSLKSLLPAI--TPS--HVSSLFSLNLDPHTALQFSYWISQTPNFKHNVDSYASL 107

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263
             +++  +           +V D  K  +S+           +  D L +S  C K   D
Sbjct: 108 LTLIDHHK-----------IVSDVPKIIVSMIKCC------YSAPDALFVSDICRKMSKD 150

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG---- 319
              K+  + YN L+TL    GL  +  ++Y  M +   S+D  T+ LMI    K G    
Sbjct: 151 DITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKE 210

Query: 320 -------------------------------RLDAAIKLFQEMKERNFRPSFNIFASLVD 348
                                           +D+A ++F+EM  RN   S+N    L+ 
Sbjct: 211 AKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRN-EVSYN---QLIH 266

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
            + +AGR+D ++ +++ M+     P+   Y +LI+   +   +  A+ L DEM      P
Sbjct: 267 GLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRK-NVHKAMGLLDEMLERNLVP 325

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +   +  +I    ++G LD A  + + M+  G +P   TY C ++    S +V+ A +L+
Sbjct: 326 DLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLF 385

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KD 527
           +S+T  G+   +  Y+ L+    K   VD A  +  +M +   S +    + L+  +   
Sbjct: 386 DSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSA 445

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
           G++  AL     M   G++   +    L    +K   ++ A   L+  + S  K
Sbjct: 446 GNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEK 499



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 134/323 (41%), Gaps = 32/323 (9%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LSLFD+MV    K  +  F   N +I  + K    + ++ C +K++ S  K   ++YN  
Sbjct: 452 LSLFDQMVKMGLKPTVYTF---NILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAF 508

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           + ++ + G   +A ++   M++     D  TY  +I +  K G   +A  + + M + + 
Sbjct: 509 IEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADC 568

Query: 337 RPSFNIFASLVDSM----------GKAG-------------------RLDTSMKVYMEMQ 367
            PS + F SL+  +          G+ G                     D  ++++ EM+
Sbjct: 569 EPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEME 628

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P +  Y  LI    K   L  AL+L D+M+  G  P+  +F  +I    K  K  
Sbjct: 629 KHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYG 688

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A +I  DM  +G  P       L+      G+ +    ++  +   G       +  L+
Sbjct: 689 EAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILI 748

Query: 488 TLLAKRKLVDVAAKILLEMKTMG 510
             + K+ LV+  +++  EM+  G
Sbjct: 749 DGMLKQGLVEEFSQLFEEMEKNG 771



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 79/163 (48%)

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           E++E MEK  C+ D   YE +I  + K   L  A+KL  +M++    PS  +F +++   
Sbjct: 622 ELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCC 681

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K  +   +  +  +M   GH P      +LI    + G+ +    ++ ++R  G+  + 
Sbjct: 682 CKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDE 741

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
             + ++I+   K G ++    +F +ME+ G   +P TYS L +
Sbjct: 742 IAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQ 784



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 116/304 (38%), Gaps = 32/304 (10%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           DFD       +M+    K    +   YN  I+    A K++ +     ++ +     D  
Sbjct: 482 DFDDAHKCLQKMMSSGEK---PVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDF 538

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL-------AKSGR---- 320
           +Y  L+  +   GL Y AF++ +SM   +C     T+  +I  L        KSG     
Sbjct: 539 TYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVE 598

Query: 321 ------------------LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
                              D  I+LF+EM++    P    +  L+  + K   L  ++K+
Sbjct: 599 SVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKL 658

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
             +MQ  G  PS  ++ ++I    K  K   A  + ++M  +G  P       +I    +
Sbjct: 659 LDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYE 718

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            G+ +   S+F  +   G+      +  L++     G V+   +L+  M   G      T
Sbjct: 719 EGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRT 778

Query: 483 YTAL 486
           Y+ L
Sbjct: 779 YSIL 782



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 90/436 (20%), Positives = 170/436 (38%), Gaps = 42/436 (9%)

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS-LIESYAKAGKLDT 393
           NF+ + + +ASL+  +     +    K+ + M  C +     ++VS +    +K      
Sbjct: 96  NFKHNVDSYASLLTLIDHHKIVSDVPKIIVSMIKCCYSAPDALFVSDICRKMSKDDITKL 155

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           +L+ ++E           L T++    A+ G +D    ++T+M          T++ ++ 
Sbjct: 156 SLKCYNE-----------LLTLL----ARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMIN 200

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
           ++   G V  A +    M  AGL P   T T+ +    + K VD A ++  EM       
Sbjct: 201 VYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRN--- 257

Query: 514 DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLL 572
           +VS + ++    + G +D A+     M       N +    L +  C KN     A  LL
Sbjct: 258 EVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNV--HKAMGLL 315

Query: 573 ETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRK 632
           +  +E     DL+ Y S++A   R     +   L++++            GL   P+QR 
Sbjct: 316 DEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKER---------GLV--PDQRT 364

Query: 633 QPVL-------SFVREFFHGIDYELEEGAARYFV--NVLLNYLVLMGQINRARCVWKVAY 683
                      + V E     D   EEG +   +  +VL++    +G+++ A C+++   
Sbjct: 365 YGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKML 424

Query: 684 ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGP 743
                P A  F+  I       NL    +L   M  +        +  ++ R +K     
Sbjct: 425 SKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFD 484

Query: 744 TLKIVIAQMLSSVESP 759
                + +M+SS E P
Sbjct: 485 DAHKCLQKMMSSGEKP 500


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 187/415 (45%), Gaps = 10/415 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L D    +   +  L+ F +++    +  I +    N +++   +A + + +
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIII---ANHLLKGFCEAKRTDEA 165

Query: 255 Y-CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE--CSLDGSTYELM 311
                 +  +  C  D  SY++L+    ++G   +A ++   M +G   CS D   Y  +
Sbjct: 166 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTV 225

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I    K G ++ A  LF+EM +R   P F  ++S+V ++ KA  +D +     +M   G 
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+   Y +LI  Y+  G+   A+R++ EMR     P+    +M++ S  K GK+  A  
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 345

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +F  M   G  P   +Y+ +L  +A+ G +     L++ M   G+ P + T+  L+   A
Sbjct: 346 VFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYA 405

Query: 492 KRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
              ++D A  I  EM+  G   D V+   V+    + G +D A+     M   G+  + +
Sbjct: 406 NCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKY 465

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV---RCQDEQN 602
               L +    +     AK L+   + +   +D+V ++S++ +L    R  D QN
Sbjct: 466 AYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQN 520



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 172/389 (44%), Gaps = 8/389 (2%)

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           M  LFD M+ D     I  F   N +I+  A    L+ +   F ++ D   K D  +Y  
Sbjct: 378 MTDLFDLMLGDGIAPDIYTF---NVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 434

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           ++      G    A E +  M     + D   Y  +I      G L  A +L  E+    
Sbjct: 435 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 494

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
                  F+S+++++ K GR+  +  ++      G  P+A +Y  L++ Y   GK++ AL
Sbjct: 495 MHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKAL 554

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           R++D M  AG  PN  ++  ++  + K G++D  +S+F +M + G  P+   Y+ +++  
Sbjct: 555 RVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             +G+   A   ++ MT +G+     TY  +L  L K +  D A  +  E++ M   +++
Sbjct: 615 FEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 674

Query: 516 SASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
              + ++    +   V+ A      +  SG+         +  + +K  L E A+ +  +
Sbjct: 675 ITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSS 734

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
              +  + D    + +L H+VR   ++NE
Sbjct: 735 MQNAGCEPD----SRLLNHVVRELLKKNE 759



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 164/350 (46%), Gaps = 19/350 (5%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           SY +++  +  KG      ++++ M     + D  T+ ++I + A  G LD A+ +F EM
Sbjct: 361 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           ++   +P    + +++ ++ + G++D +M+ + +M   G  P    Y  LI+ +   G L
Sbjct: 421 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A  L  E+   G   +   F+ II +  K G++  A +IF      G  PT   YS L
Sbjct: 481 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSML 540

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++ +   G+++ A++++++M SAG+ P    Y  L+    K   +D    +  EM   G 
Sbjct: 541 MDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKG- 599

Query: 512 SVDVSASDVLMVYIKDG------SVDHALRWLRFMGSSGIRTN----NFIVRQLFESCMK 561
              +  S +L   I DG      +V   +++   M  SGI  N    N ++R LF    K
Sbjct: 600 ---IKPSTILYNIIIDGLFEAGRTVPAKVKFHE-MTESGIAMNKCTYNIVLRGLF----K 651

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
           N  ++ A  L +       K++++   +++A + + +  +  + L A +S
Sbjct: 652 NRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASIS 701



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 144/318 (45%), Gaps = 2/318 (0%)

Query: 222 EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           E++ +   NG+ L    ++ +I  L K  ++  +   F   ++         Y++LM  +
Sbjct: 485 ELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGY 544

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   KA  ++++M       +   Y  ++    K GR+D  + LF+EM ++  +PS 
Sbjct: 545 CLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 604

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
            ++  ++D + +AGR   +   + EM   G   +   Y  ++    K    D A+ L+ E
Sbjct: 605 ILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKE 664

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           +R    + N      +I    ++ +++ A  +F  + R+G +P   TYS ++      G 
Sbjct: 665 LRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGL 724

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           V+ A  +++SM +AG  P       ++  L K+  +  A   L ++    +S++   + +
Sbjct: 725 VEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTML 784

Query: 521 LM-VYIKDGSVDHALRWL 537
           L+ ++   G+    +R+L
Sbjct: 785 LVDLFSSKGTCREHIRFL 802


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 170/380 (44%), Gaps = 2/380 (0%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +L + +V     +G+ +   +N +I    K   +  +    +++      +D   YN L+
Sbjct: 171 ALAEMLVRGRGIDGLDVV-GWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLV 229

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             F + G    A E+ E M+      +  TY  +I    K   +D A  L++ M      
Sbjct: 230 AGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVL 289

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P     ++LVD + + G+   +  ++ EM   G  P+   Y +LI+S AKA +   +L L
Sbjct: 290 PDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGL 349

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
             EM   G   +  ++T +++   K GK++ A  +    +     P   TY+ L++ H  
Sbjct: 350 LGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCR 409

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           +G +D A ++   M    + P + T+++++  L KR  +  AA  + +MK  G + +V  
Sbjct: 410 AGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVT 469

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
              L+  + K    + AL   R M   G+  NNF+V  L     KN   E A+ L +   
Sbjct: 470 YGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMD 529

Query: 577 ESAAKVDLVLYTSVLAHLVR 596
           E    +D V YT+++  L +
Sbjct: 530 ERGLLLDHVNYTTLMDGLFK 549



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 142/312 (45%), Gaps = 1/312 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I    K    E +   ++ +L    + +    + L+      G    A  +++ M+
Sbjct: 470 YGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMD 529

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +    LD   Y  ++  L K+G + AA K+ QE+ E+N  P   ++   ++ +   G+  
Sbjct: 530 ERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFS 589

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +     EM+  G  P    Y ++I +  + GK   AL+L  EM+    +PN   +T ++
Sbjct: 590 EAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLV 649

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               ++G +  A  +  +M  AGF PT  T+  +L+  + S + D  ++++  M  AGL 
Sbjct: 650 VGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLH 709

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
             ++ Y  L+ +L    +   A  +L EM T G + D ++ + +++ + K   +D+A   
Sbjct: 710 ADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAI 769

Query: 537 LRFMGSSGIRTN 548
              M   G+  N
Sbjct: 770 YAQMLHQGLSPN 781



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 1/309 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  I  L    K   +    K++ ++  + D  +YN ++     +G   KA ++ + M+
Sbjct: 575 YNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMK 634

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     +  TY  ++  L ++G +  A  L  EM    F P+      ++ +   + R D
Sbjct: 635 RNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPD 694

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             ++++  M G G      +Y +L+      G    A  + DEM   G  P+   F  +I
Sbjct: 695 VILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALI 754

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             H KS  LD A +I+  M   G  P  +T++ LL    S+G++  A  + + M   GL 
Sbjct: 755 LGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLE 814

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P   TY  L+T  AK+     A ++  EM + G+    S  + LM  + K G ++ A   
Sbjct: 815 PNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKEL 874

Query: 537 LRFMGSSGI 545
              M   G+
Sbjct: 875 FSEMKRRGV 883



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 171/397 (43%), Gaps = 7/397 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
           D + SL+    R S  +P       L D L     F    +LF EM     K G++    
Sbjct: 274 DEAFSLYEGMVR-SGVLPDVVTLSALVDGLCRDGQFSEAYALFREM----DKIGVAPNHV 328

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  LAKA +   S     +++     +D   Y  LM     +G   +A ++    
Sbjct: 329 TYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHA 388

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +    + +  TY +++ +  ++G +D A ++  +M+E++  P+   F+S+++ + K G L
Sbjct: 389 QSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCL 448

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +     +M+  G  P+   Y +LI+ + K    + AL ++ +M   G   N  +   +
Sbjct: 449 GKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSL 508

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K+G ++ A ++F DM+  G L     Y+ L++    +G + +A K+   +    L
Sbjct: 509 VNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNL 568

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY-IKDGSVDHALR 535
            P    Y   +  L        A   L EM+  G   D +  + ++    ++G    AL+
Sbjct: 569 SPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALK 628

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
            L+ M  + I+ N      L    ++  + + AK LL
Sbjct: 629 LLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLL 665



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 159/396 (40%), Gaps = 4/396 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L D    + + DG   +  +M   S    +  FS+   +I  L K   L  +    +
Sbjct: 400 YTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSS---IINGLVKRGCLGKAADYMR 456

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+ DS    +  +Y  L+  F        A ++Y  M       +    + ++  L K+G
Sbjct: 457 KMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNG 516

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            ++ A  LF++M ER        + +L+D + K G +  + KV  E+      P A +Y 
Sbjct: 517 NIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYN 576

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
             I      GK   A     EMR  G  P+   +  +I +  + GK   A+ +  +M+R 
Sbjct: 577 VFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRN 636

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
              P   TY+ L+     +G V  A  L N M SAG  P   T+  +L   +  +  DV 
Sbjct: 637 SIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVI 696

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            +I   M   G   D++  + L+ V    G   +A   L  M + GI  +      L   
Sbjct: 697 LEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILG 756

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             K++  ++A  +    +      ++  + ++L  L
Sbjct: 757 HCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGL 792



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 127/287 (44%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + YN +I    +  K   +    K++  +  K +  +Y  L+   L  G+  KA  +   
Sbjct: 608 ATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNE 667

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M     +    T++ ++ + + S R D  +++ + M          ++ +LV  +   G 
Sbjct: 668 MASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGM 727

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              +  V  EM   G  P    + +LI  + K+  LD A  ++ +M   G  PN   F  
Sbjct: 728 ARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNT 787

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           ++     +G++  A ++ +DM++ G  P   TY  L+  +A       A++LY  M S G
Sbjct: 788 LLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKG 847

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             P  STY +L++  AK  +++ A ++  EMK  G     S  D+L+
Sbjct: 848 FIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILL 894



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 4/228 (1%)

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           P    EI+E M       D + Y  ++  L   G    A  +  EM  R   P    F +
Sbjct: 693 PDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNA 752

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+    K+  LD +  +Y +M   G  P+   + +L+     AG++  A  +  +M+  G
Sbjct: 753 LILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVG 812

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             PN   + +++  +AK      A+ ++ +M   GF+P  STY+ L+   A +G ++ A 
Sbjct: 813 LEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAK 872

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAK-RKLVDVAAKILL-EMKTMGY 511
           +L++ M   G+    STY  LL   +K R  ++V  +ILL +MK +G+
Sbjct: 873 ELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEV--RILLKDMKELGF 918



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 35/269 (13%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           + RV+Q  + + + ++     + ++ +    D   YN L+ +    G+   A  + + M 
Sbjct: 680 HQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEML 739

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + D  T+  +I    KS  LD A  ++ +M  +   P+   F +L+  +  AGR+ 
Sbjct: 740 TRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIG 799

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  V  +M+  G  P+   Y  L+  YAK      ALRL+ EM   GF P    +  ++
Sbjct: 800 EADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLM 859

Query: 418 ESHAKSGKLDIAMSIFTDMERA-----------------------------------GFL 442
              AK+G ++ A  +F++M+R                                    GF 
Sbjct: 860 SDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFK 919

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           P+  T S +    +  G    A +L  ++
Sbjct: 920 PSKGTISSMSRAFSRPGMTGEARRLLKTL 948


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 124/579 (21%), Positives = 241/579 (41%), Gaps = 41/579 (7%)

Query: 237 AYNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           +YN VI    K    L  +   F+++L      D +++N L+      G    A  +++ 
Sbjct: 60  SYNAVIDACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDE 119

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M       D  TY   + ++ K G ++ A ++  +M+  N +P+   +++L+D   K  +
Sbjct: 120 MIHLGSGRDIYTYNTFVDAICKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEK 179

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            D ++K+  +M+  G +     Y +L+  Y K GK D    + ++M   G   +   +  
Sbjct: 180 YDEALKLREKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNS 239

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I  + K G+LD+   +  DM   G  P+  TYS L+++++ +G    A  +Y     +G
Sbjct: 240 LINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESG 299

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV----- 530
           L+  +  +++ +  LAK  LV+ A  +L EM  MG   +V   + ++       +     
Sbjct: 300 LKADVVLFSSFIDTLAKNGLVECALSLLDEMIKMGIKPNVVTYNTIIDAFGKSKILTEED 359

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK-----PLLETYVESAAKVDLV 585
              +  +   G   +R  N + R    S     +  S +      L +  V+   + ++V
Sbjct: 360 PGNMGIVGVYGGQIVRATNPVTRG-GRSATDVRMRRSQELFFILELFQKMVQQGVRPNVV 418

Query: 586 LYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHG 645
            ++++L    RC + ++   L+  L    +  +    GL  G  +      S  R  F+ 
Sbjct: 419 TFSAILNACSRCNNFEDAALLLEQLRLFDNSVYGVAYGLLMGHLE----AWSQARSLFNQ 474

Query: 646 IDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWS---L 702
           +   ++   +  F N L + L   GQ   A+ V       +++           W    L
Sbjct: 475 LG-RMDSPTSSAFYNALTDVLWHFGQRQGAQQVVLEGVNRRVWENT--------WGDFCL 525

Query: 703 DVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQM 752
           D+  +S GAA   V   L   R  +     +P  + ++TG           TL+ VI  +
Sbjct: 526 DLHLMSCGAAQAMVHAWLLNVRSIVFEGRAMPEFLSILTGWGKHSKIAGSSTLRRVIEAL 585

Query: 753 LSSVESPFEVSKVVLR---APGDSVMEWFKKPIVQQFLL 788
           L S+ +PF+V +  +    +P   V  W ++      LL
Sbjct: 586 LLSIGAPFQVERFNIGRFVSPSALVAAWLRESGTVNILL 624



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 164/380 (43%), Gaps = 46/380 (12%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q    P  + +  L    + +   +   ++FDEM+H  S   I     YN  +  + K  
Sbjct: 87  QDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDI---YTYNTFVDAICKCG 143

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            +E++      +  ++ K +  +Y+ LM  F       +A ++ E M+     LD   Y 
Sbjct: 144 NMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYN 203

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++    K+G+ D    + ++M+          + SL++  GK GRLD    +  +M+  
Sbjct: 204 TLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQ 263

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  PS   Y +LI+ Y+KAG    A  ++ + + +G + +  LF+  I++ AK+G ++ A
Sbjct: 264 GVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECA 323

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASS------------------GQVDSA------- 464
           +S+  +M + G  P   TY+ +++    S                  GQ+  A       
Sbjct: 324 LSLLDEMIKMGIKPNVVTYNTIIDAFGKSKILTEEDPGNMGIVGVYGGQIVRATNPVTRG 383

Query: 465 ------------------MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
                             ++L+  M   G+RP + T++A+L   ++    + AA +L ++
Sbjct: 384 GRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNNFEDAALLLEQL 443

Query: 507 KTMGYSVDVSASDVLMVYIK 526
           +    SV   A  +LM +++
Sbjct: 444 RLFDNSVYGVAYGLLMGHLE 463



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 2/291 (0%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG-RLDTSMKVYMEM 366
           +  +I + A+SG    A+ + + MK    RP+   + +++D+ GK G  L  ++  + +M
Sbjct: 26  HSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQM 85

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G  P    + SL+ + ++AG L+ A  ++DEM   G   +   +   +++  K G +
Sbjct: 86  LQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNM 145

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           ++A  +  DME     P   TYS L++  +   + D A+KL   M S G++     Y  L
Sbjct: 146 ELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYNTL 205

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           L +  K    D  A +  +M+ +G   D V+ + ++  Y K G +D     ++ M + G+
Sbjct: 206 LAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGV 265

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             +      L +   K  ++  A  +   + ES  K D+VL++S +  L +
Sbjct: 266 APSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAK 316


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 134/555 (24%), Positives = 228/555 (41%), Gaps = 16/555 (2%)

Query: 211 RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
           R F   L LFDE+V    +  + +++A   V++ L +      +     ++  S C +  
Sbjct: 194 RQFRMALHLFDEIVSSGLRPDVYVYTA---VVRSLCELKDFIRAREVIGRMESSGCDLSV 250

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            +YNV +         ++A EI   +       D  TY  ++  L K    +A  ++  E
Sbjct: 251 ATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNE 310

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M E  F PS    ++LVD + K G + ++  +  +++  G  PS  +Y +LI S  K GK
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           LD A  L++ M   G  PN   ++++I+S  K GKLD+A+     M   G   T   YS 
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L+  H   G++ +A  L++ M + GL+P +  YT+L++   K   +  A ++  EM   G
Sbjct: 431 LISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKG 490

Query: 511 YSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            S +      L+  +   + +  A +    M    +  N      L E   K      A 
Sbjct: 491 ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF-LCGLFTG- 627
            LL+  VE     D   Y  +++ L         R  M  L   + K +      L  G 
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGY 610

Query: 628 -PEQRKQPVLSFVREFFHGIDYELEEGAARYFVNV-LLNYLVLMGQINRARC-VWKVAYE 684
             E R    L   RE        L  G A   V   +L Y +L  Q  R+   + K  ++
Sbjct: 611 CKEGRLDDALDACREM-------LGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHD 663

Query: 685 NKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPT 744
             L P  +++   I  +    NL +   L  +M +       + Y  ++    K+     
Sbjct: 664 QGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDK 723

Query: 745 LKIVIAQMLSSVESP 759
            +++  +ML+S   P
Sbjct: 724 AELLCREMLASNSLP 738



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 168/372 (45%), Gaps = 11/372 (2%)

Query: 223 MVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           + H+ +  GIS  +  +  +I  L  A+++  +   F ++++ +   +  +YNVL+    
Sbjct: 482 LYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHC 541

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
            +G   +AFE+ + M +     D  TY  +I  L  +GR+  A +   +++    + +  
Sbjct: 542 KEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEM 601

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            F++L+    K GRLD ++    EM G G       Y  LI    +     + + L  +M
Sbjct: 602 CFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQM 661

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G RP+  L+T +I+++AK+G L +A  ++  M   G LP   TY+ L+      G +
Sbjct: 662 HDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLM 721

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK---ILLEMKTMGYSVDVSAS 518
           D A  L   M ++   P  +TY   L  L     ++ A +   +LLE    G+  +    
Sbjct: 722 DKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE----GFLANTVTY 777

Query: 519 DVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ-LFESCMKNALYESAKPLLETYV 576
           ++L+  + K G +  A   L  M  SGI  +       ++E C +  L E+ K L E+ +
Sbjct: 778 NILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIK-LWESML 836

Query: 577 ESAAKVDLVLYT 588
                 D V Y 
Sbjct: 837 NRGVNPDTVAYN 848



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 6/255 (2%)

Query: 199 CY-VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCC 257
           CY V+++ +L + +D   ++ L  +M HD      ++   Y  +I   AKA  L+M++  
Sbjct: 637 CYSVLIYGILRQ-QDRRSIIDLLKQM-HDQGLRPDNVL--YTTMIDANAKAGNLKMAFGL 692

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           +  ++   C  +  +Y  L+      GL  KA  +   M       + +TY   +  L  
Sbjct: 693 WDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTS 752

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G ++ AI+L   + E  F  +   +  L+    K GR+  + +V + M   G  P    
Sbjct: 753 EGNIEKAIQLHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCIS 811

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y ++I  Y + G L  A++LW+ M   G  P+   +  +I     +G+L  A  +  DM 
Sbjct: 812 YSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMM 871

Query: 438 RAGFLPTPSTYSCLL 452
           R G  P  +TY+ L+
Sbjct: 872 RRGVKPNRATYNSLI 886



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 94/210 (44%), Gaps = 1/210 (0%)

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M  CG  P       ++    +  +   AL L+DE+  +G RP+  ++T ++ S  +   
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
              A  +   ME +G   + +TY+  +     + +V  A+++ N ++  GLR  + TY  
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGY-SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
           L+  L K +  +   +++ EM   G+   + + S+++    K G++  A   +  +   G
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFG 350

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLET 574
           +  + F+   L  S  K+   + A+ L   
Sbjct: 351 VAPSLFVYNALINSMCKDGKLDEAESLFNN 380


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 155/329 (47%), Gaps = 3/329 (0%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL--DAAIKLF 328
           Q +N +M ++   G      ++ ++M   E   D  ++  +I + AKSG L   +A  L 
Sbjct: 64  QVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLL 123

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            E+++   RP    + +L+ +  +   LD ++ V+ EM     RP    Y +++  + + 
Sbjct: 124 LEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRC 183

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           GK   A R++ E+   GF+P+   +  ++ + AK G  D    +  ++ RAGF     TY
Sbjct: 184 GKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITY 243

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + ++ M+   G++D A+ LY+ M + G  P   TYT L+  L K   +  A K+L EM  
Sbjct: 244 NTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMAD 303

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G     V+ S ++  Y K G  + A+R    M +SG++ +      + +   ++     
Sbjct: 304 AGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRK 363

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              L +T +    + D  LY  +LA L +
Sbjct: 364 LMALYQTMMNDGYRPDNALYQVMLAALAK 392



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 163/350 (46%), Gaps = 7/350 (2%)

Query: 184 FRWAKRQSWYVPGDECYVM--LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
            RW   +  ++PG    V   +  V   S  FD +  L D M     +  +    ++N +
Sbjct: 48  IRWPHLRFPHLPGATVQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLV---SFNTL 104

Query: 242 IQYLAKADKLE--MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
           I   AK+  L    ++    +V     + D  +YN L++          A  ++E M   
Sbjct: 105 INARAKSGCLAPGSAFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMAS 164

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
           EC  D  TY  M+    + G+   A ++F+E+ E+ F+P    + SL+ +  K G  DT 
Sbjct: 165 ECRPDLWTYNAMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTV 224

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            +V  E+   G +     Y ++I  Y K G+LD AL L+DEMR  G  P+   +T++I+S
Sbjct: 225 ERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDS 284

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K  ++  A  +  +M  AG  PT  T+S L+  +A  G+ + A++ ++ M ++G++P 
Sbjct: 285 LGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPD 344

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS 529
              Y  +L ++A+   +     +   M   GY  D +   V++  +  G+
Sbjct: 345 RLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGN 394



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 138/272 (50%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I   ++   L+ +   F++++ S+C+ D  +YN ++++    G    A  ++  + 
Sbjct: 138 YNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFRELV 197

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D  TY  ++ + AK G  D   ++ +E+    F+     + +++   GK GRLD
Sbjct: 198 EKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLD 257

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +Y EM+  G  P A  Y  LI+S  K  ++  A ++ +EM  AG +P    F+ +I
Sbjct: 258 LALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALI 317

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            ++AK G+ + A+  F+ M  +G  P    Y  +L++ A SG +   M LY +M + G R
Sbjct: 318 CAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYR 377

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
           P  + Y  +L  LAK    D    ++ +M+ +
Sbjct: 378 PDNALYQVMLAALAKGNEYDEIEAVVQDMEVV 409



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 147/649 (22%), Positives = 259/649 (39%), Gaps = 98/649 (15%)

Query: 196  GDEC--YVMLFDVLNESRDFDGMLSLFDEM----VHDSSKNGISLFSAYNRVIQYLAKAD 249
            G +C  Y  L   L E+  F     +F +M    +  S K   S+ SAY        K  
Sbjct: 516  GQDCNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAY-------CKLG 568

Query: 250  KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
              E ++    + + S   ++  S  V M     K   ++  E +    K E S+D   + 
Sbjct: 569  FPETAHQLMDEAVQSGISLNILSSRVTMIEAYGKIKLWQHAENFVKGLKQEPSIDRRIWN 628

Query: 310  LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
             +I + A+SG  + A  +F  M E+   P+ +    ++ ++   GRLD    +  E+Q  
Sbjct: 629  ALIHAYAESGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDM 688

Query: 370  GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
            G + S    + +++++ KAG +   +++++ M+ AG+ PN  ++  +I    ++ +    
Sbjct: 689  GFKISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDV 748

Query: 430  MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL-- 487
              +  +MERAGF P  +  + LL M+  +G  D  +++Y+S+  AGL P   TY  L+  
Sbjct: 749  ELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVM 808

Query: 488  ------------------------------TLLA---KRKLVDVAAKILLEMKTMGYSVD 514
                                          +LLA   K KL + A ++  E+++ GY ++
Sbjct: 809  YSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLN 868

Query: 515  VSASDVLMVYIKD------------------------------------GSVDHALRWLR 538
             S   +LM   +D                                    G  D A + L 
Sbjct: 869  RSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEAEKVLN 928

Query: 539  FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
             + SS +  +      +F + +KN  Y      L        K D  ++T  +     C+
Sbjct: 929  SLKSSSLEVSTLPYSTVFNAYLKNGDYNLGITKLLEMKADGVKPDHQVWTCFIRAASLCE 988

Query: 599  DEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYF 658
               +    + +L++ +         L T   +R   +L+ V  F   +D  LE+ AA  F
Sbjct: 989  RTADA---ILLLNSLRDCEFDLPIRLLT---ERTSSLLTEVSNFLEELD-ALEDSAALNF 1041

Query: 659  VNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMH 718
            VN L + L        A  V+++A +  ++   +       W  D R LS GAAL A+  
Sbjct: 1042 VNALEDLLWAFECRATASYVFQLAVDKSIYRHNVFRVVEKDWGADFRKLSAGAALTALTL 1101

Query: 719  TLHRFRKRMLYYG-VVPRRIKLVTGP------TLKIVIAQMLSSVESPF 760
             L + +   L      P+ I LVTG       +L+  I   L  + SPF
Sbjct: 1102 WLDQMQDASLQGSPESPKSIVLVTGEGEYNMVSLRKTIRAYLLEMGSPF 1150



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 103/503 (20%), Positives = 196/503 (38%), Gaps = 108/503 (21%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA---DKL 251
           P    Y+++ D++  S D   +++L+  M++D  +   +L   Y  ++  LAK    D++
Sbjct: 343 PDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNAL---YQVMLAALAKGNEYDEI 399

Query: 252 E-----MSYCC-------------------FKKVLDSDC----KIDTQSYNVLMTLFLNK 283
           E     M   C                     K+L   C    + D++S   ++  +   
Sbjct: 400 EAVVQDMEVVCQMNPQLVSSILIKAECISQGAKLLKKACLQGHEPDSKSLLSILDAYETT 459

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF---QEMKERNFRPSF 340
           G   +   + + + +   S      E  I  L K+ ++ AA++ +   Q +K  +F    
Sbjct: 460 GKHEEGLSLLQFIREHVPSSCNLISECSIMLLCKNQKIAAAMQEYSSMQMLKCGSFGQDC 519

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
           N++  L+  + +A     + +V+ +MQ  G  PS  +Y S+I +Y K G  +TA +L DE
Sbjct: 520 NLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLMDE 579

Query: 401 MRIAGFRPN-----------FG------------------------LFTMIIESHAKSGK 425
              +G   N           +G                        ++  +I ++A+SG 
Sbjct: 580 AVQSGISLNILSSRVTMIEAYGKIKLWQHAENFVKGLKQEPSIDRRIWNALIHAYAESGL 639

Query: 426 LDIAMSIFTDMERAGFLPT-----------------------------------PSTYSC 450
            + A ++F  M   G LPT                                    ST   
Sbjct: 640 YEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVIL 699

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           +L+    +G +   MK+YN M  AG  P +  Y ++++LL + K       +++EM+  G
Sbjct: 700 MLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAG 759

Query: 511 YSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
           +  D++  + +L++Y  +G+ D  +     +  +G+  N      L     +N   E   
Sbjct: 760 FEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGF 819

Query: 570 PLLETYVESAAKVDLVLYTSVLA 592
            LL    +      L  Y S+LA
Sbjct: 820 TLLNEMGKKGLTPKLESYKSLLA 842


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 153/326 (46%), Gaps = 7/326 (2%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           T ++N+++    + G P +A E+   M +     +  TY  +I      GR+ AA+ + +
Sbjct: 483 TTTFNIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMR 538

Query: 330 EMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAK 387
           EM+ER    P+   + +++    K GR+D ++KV+ EM   G  +P A MY +LI  Y  
Sbjct: 539 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 598

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            GKLDTAL   D M   G       + +++ +    G+   A  +  +M   G  P   T
Sbjct: 599 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 658

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+  H   G V  A++++ +M+  G+R  + TYTAL+  L+K+  V    K+  E  
Sbjct: 659 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV 718

Query: 508 TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G   D+   + L+  +   G++D A   +  M    I  ++     L          +
Sbjct: 719 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 778

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLA 592
            A+ L++   E   + DLV Y ++++
Sbjct: 779 EARKLIDEMTERGIQPDLVTYNTLIS 804



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 152/337 (45%), Gaps = 2/337 (0%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L + R  + +    P    Y  +     +    D  + +FDEM+        ++   YN
Sbjct: 533 ALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM--YN 590

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I       KL+ +     ++++    +   +YN+L+      G   +A+E+ E M   
Sbjct: 591 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 650

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             + D  TY ++I    K G +  A+++F+ M  R  R +   + +L+ ++ K G++  +
Sbjct: 651 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQET 710

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            K++ E    G RP   +Y +LI S++ +G +D A  +  EM      P+   +  ++  
Sbjct: 711 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRG 770

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
               G++D A  +  +M   G  P   TY+ L+  ++  G V  A+++ N M + G  P 
Sbjct: 771 LCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPT 830

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           L TY AL+  L K    D A  ++ EM   G + D S
Sbjct: 831 LLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 867



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 5/276 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
            D  L   D MV    + G+++  + YN ++  L    +   +Y   +++       D  
Sbjct: 602 LDTALLYRDRMV----ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 657

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN+L+     +G   KA EI+E+M +        TY  +I +L+K G++    KLF E 
Sbjct: 658 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 717

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             R  RP   ++ +L++S   +G +D + ++  EM+     P    Y +L+      G++
Sbjct: 718 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 777

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D A +L DEM   G +P+   +  +I  ++  G +  A+ I  +M   GF PT  TY+ L
Sbjct: 778 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 837

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           ++    +GQ D A  +   M   G+ P  STY +L+
Sbjct: 838 IQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 873


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 153/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  ML + L + R F  +   ++E++       +  F   N
Sbjct: 73  AIECYRLTREHKLWVPFDTCRKML-EHLMKLRYFKLVWGFYEEILECGYPASLYFF---N 128

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 129 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAN 188

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 189 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLA 248

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y  M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 249 MEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 308

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      GQ   A K+   M S GL+P 
Sbjct: 309 CCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPD 368

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           + TYT ++    K+  V   +K+L EM+  G++  V   +VLM
Sbjct: 369 IGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 411



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 147/348 (42%), Gaps = 1/348 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   M+  L K          +
Sbjct: 53  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFY 112

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 113 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 172

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M   G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 173 GDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTF 232

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K   +  A  ++ EM  
Sbjct: 233 TTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSM 292

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D  + + ++    K+G +D A +  + M    IR ++     L     +      
Sbjct: 293 KGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVD 352

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           A+ +L   +    K D+  YT ++    +  D      L+  +    H
Sbjct: 353 AEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 400



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 141/311 (45%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +++++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 89  FDTCRKMLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 148

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 149 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKES 208

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K G++D A+ ++  M      P+   + 
Sbjct: 209 KMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYN 268

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K+G L  A  +  +M   G  P   TY+ L++     G +D+A K    M   
Sbjct: 269 TLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQE 328

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   D+    +++  + K G V   
Sbjct: 329 NIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKG 388

Query: 534 LRWLRFMGSSG 544
            + L+ M  +G
Sbjct: 389 SKLLKEMQRNG 399



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 142/319 (44%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  +E      F+    +++ + K     
Sbjct: 47  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFK 106

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 107 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 166

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M   G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 167 NGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLI 226

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I   M +     D+   + L+  + K+G +  A   
Sbjct: 227 PNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDL 286

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ + F    L + C K    ++A    +  ++   ++D V YT++++ L  
Sbjct: 287 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGL-- 344

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ Q+   E+ L  +LS 
Sbjct: 345 CQEGQSVDAEKMLREMLSV 363



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/287 (19%), Positives = 119/287 (41%), Gaps = 40/287 (13%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLDTA 394
           R    +F+ L+ +  ++G L  +++ Y   +   H+   P      ++E   K       
Sbjct: 51  RSDIYVFSGLITAYLESGFLRDAIECYRLTRE--HKLWVPFDTCRKMLEHLMKLRYFKLV 108

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              ++E+   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+  
Sbjct: 109 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 168

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +   G +D   +L ++M + G++P + TY+ L+  L K   +D A ++  EM   G   +
Sbjct: 169 YIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPN 228

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V+ + ++  + K+G VD A+   + M                       L +S  P   
Sbjct: 229 GVTFTTLIDGHCKNGRVDLAMEIYKRM-----------------------LSQSLLP--- 262

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF 620
                    DL+ Y +++  L +  D +    L+  +S    K   F
Sbjct: 263 ---------DLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKF 300


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 162/343 (47%), Gaps = 15/343 (4%)

Query: 281 LNKGLPYKA-FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           LNK   Y+A   ++  +E    S D  ++  +I    +  RL  A+    +M +  F PS
Sbjct: 92  LNK---YEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPS 148

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              F SLV+      R   +M +  ++ G G+ P+  +Y ++I+S  + G+++TAL +  
Sbjct: 149 IVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLK 208

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            M+  G RP+   +  +I     SG   ++  I +DM R G  P   T+S L++++   G
Sbjct: 209 HMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEG 268

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSAS 518
           Q+  A K YN M    + P + TY +L+  L    L+D A K+L  + + G+  + V+ +
Sbjct: 269 QLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYN 328

Query: 519 DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
            ++  Y K   VD  ++ L  M   G+  + F    L++   +   + +A+ +L   V  
Sbjct: 329 TLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSC 388

Query: 579 AAKVDL----VLYTSVLAH------LVRCQDEQNERHLMAILS 611
               D+    +L   +  H      LVR +D Q  + ++ I++
Sbjct: 389 GVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIIT 431



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 141/309 (45%), Gaps = 5/309 (1%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY-- 363
           S Y   + S   S + + A+ LF +M E +  PS   F+ L+ ++ K  + +  + ++  
Sbjct: 45  SDYRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRH 104

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
           +EM G  H   +  + +LI+ + +  +L  AL    +M   GF P+   F  ++      
Sbjct: 105 LEMLGISHDLYS--FTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHV 162

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
            +   AMS+   +   G+ P    Y+ +++     GQV++A+ +   M   G+RP + TY
Sbjct: 163 NRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTY 222

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGS 542
            +L+T L       V+A+IL +M  MG S DV + S ++ VY K+G +  A +    M  
Sbjct: 223 NSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQ 282

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
             +  N      L      + L + AK +L   V      + V Y +++    + +   +
Sbjct: 283 RSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDD 342

Query: 603 ERHLMAILS 611
              ++ ++S
Sbjct: 343 GMKILCVMS 351



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 98/215 (45%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN ++     KG    A ++ + M+K     D  TY  +I  L  SG    + ++  +M 
Sbjct: 187 YNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMM 246

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P    F++L+D  GK G+L  + K Y EM      P+   Y SLI      G LD
Sbjct: 247 RMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLD 306

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A ++ + +   GF PN   +  +I  + K+ ++D  M I   M R G      TY+ L 
Sbjct: 307 EAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLY 366

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           + +  +G+  +A K+   M S G+ P + T+  LL
Sbjct: 367 QGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILL 401



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 136/310 (43%), Gaps = 3/310 (0%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +SL D++V    +  + +   YN +I  L +  ++  +    K +     + D  +YN L
Sbjct: 169 MSLVDQIVGLGYEPNVVI---YNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSL 225

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +T   + G    +  I   M +   S D  T+  +I    K G+L  A K + EM +R+ 
Sbjct: 226 ITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSV 285

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   + SL++ +   G LD + KV   +   G  P+A  Y +LI  Y KA ++D  ++
Sbjct: 286 NPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMK 345

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +   M   G   +   +  + + + ++GK   A  +   M   G  P   T++ LL+   
Sbjct: 346 ILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLC 405

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G++  A+     +  +    G+ TY  ++  L K   V+ A  +   +   G S DV 
Sbjct: 406 DHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVI 465

Query: 517 ASDVLMVYIK 526
               +M+ ++
Sbjct: 466 TYITMMIGLR 475



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 133/304 (43%), Gaps = 5/304 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKL 251
           Y P    Y  + D L E    +  L +   M     K GI      YN +I  L  +   
Sbjct: 180 YEPNVVIYNTIIDSLCEKGQVNTALDVLKHM----KKMGIRPDVVTYNSLITRLFHSGTW 235

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
            +S      ++      D  +++ L+ ++  +G   +A + Y  M +   + +  TY  +
Sbjct: 236 GVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSL 295

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L   G LD A K+   +  + F P+   + +L++   KA R+D  MK+   M   G 
Sbjct: 296 INGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGV 355

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
                 Y +L + Y +AGK   A ++   M   G  P+   F ++++     GK+  A+ 
Sbjct: 356 DGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALV 415

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
              D++++  +    TY+ +++    + +V+ A  L+ S+   G+ P + TY  ++  L 
Sbjct: 416 RLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLR 475

Query: 492 KRKL 495
           +++L
Sbjct: 476 RKRL 479



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/367 (17%), Positives = 132/367 (35%), Gaps = 79/367 (21%)

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           + + ++ ++ +M      PS   +  L+ + AK  K +  + L+  + + G   +   FT
Sbjct: 59  KFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFT 118

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+   +  +L +A+S    M + GF P+  T+  L+       +   AM L + +   
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGL 178

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534
           G  P +  Y  ++  L ++                                  G V+ AL
Sbjct: 179 GYEPNVVIYNTIIDSLCEK----------------------------------GQVNTAL 204

Query: 535 RWLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
             L+ M   GIR    T N ++ +LF S      +  +  +L   +      D++ ++++
Sbjct: 205 DVLKHMKKMGIRPDVVTYNSLITRLFHS----GTWGVSARILSDMMRMGISPDVITFSAL 260

Query: 591 LAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYEL 650
           +                                   G E +   +L   +++   I   +
Sbjct: 261 ID--------------------------------VYGKEGQ---LLEAKKQYNEMIQRSV 285

Query: 651 EEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVG 710
                 Y  N L+N L + G ++ A+ V  V      FP A+ ++  I      + +  G
Sbjct: 286 NPNIVTY--NSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDG 343

Query: 711 AALIAVM 717
             ++ VM
Sbjct: 344 MKILCVM 350


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 197/464 (42%), Gaps = 50/464 (10%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS----SKN 230
           +D+     +F+ A +   Y  GD  +  L +    S DF  +  +FD M  +      KN
Sbjct: 42  SDAPIPDQIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKN 101

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKA 289
            I +F AY        KA   E +   F +++D   C+   +S+N ++ + + +GL ++A
Sbjct: 102 FILVFRAY-------GKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRA 154

Query: 290 FEIYESMEKGECSLDGS--TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
            E YE    G+ ++  +  ++ L+I ++ K G +D AI++F+EM  +   P    + +L+
Sbjct: 155 LEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLM 214

Query: 348 DSMGKAGRLDTSMKVYMEMQ--GC---------------------------------GHR 372
           D + K  R+D ++ +  EMQ  GC                                 G  
Sbjct: 215 DGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCV 274

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y ++I      GKLD A+ L D M  +   PN   +  +I    K G+    + +
Sbjct: 275 PNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHL 334

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
            + +E  G       YS L+       + + AM L+  M   G +P +  Y+AL+  L +
Sbjct: 335 LSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCR 394

Query: 493 RKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
              +D A +IL EM   G + +  + S ++  + K G+   A+R  + M  +    N   
Sbjct: 395 EGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEIC 454

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
              L     ++     A  +    +    + D+V Y+S++  L 
Sbjct: 455 YSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLC 498



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 144/293 (49%), Gaps = 2/293 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L    KL+ +     +++ S C  +  +Y  L+   + +G       +  S+
Sbjct: 279 TYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSL 338

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+     +   Y  +I  L K  + + A+ L+++M E+  +P+  ++++L+D + + G+L
Sbjct: 339 EERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKL 398

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++  EM   G  P+A  Y SLI+ + K G    A+R+W EM      PN   ++++
Sbjct: 399 DEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVL 458

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM--TSA 474
           I    + GKL  AM ++T M   G  P    YS ++    ++G V+  +KL+N M    +
Sbjct: 459 IHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQES 518

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
             +P + TY  LL  L K+  +  A  +L  M   G + D+   ++ +  +++
Sbjct: 519 DSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALRE 571



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 165/388 (42%), Gaps = 12/388 (3%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++  L K D+++ +     ++    C   + ++NVL+     KG   +  ++ ++M
Sbjct: 209 TYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNM 268

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  TY  +I  L   G+LD A+ L   M      P+   + +L++ + K GR 
Sbjct: 269 FLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRS 328

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
              + +   ++  GH  +   Y +LI    K  K + A+ LW +M   G +PN  +++ +
Sbjct: 329 VDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSAL 388

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   + GKLD A  I  +M   G  P   TYS L++    +G    A++++  M     
Sbjct: 389 IDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNC 448

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P    Y+ L+  L +   +  A  +   M   G   DV A S ++      GSV+  L+
Sbjct: 449 VPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLK 508

Query: 536 WLRFM------GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
               M          + T N ++R L   C +N++   A  LL + ++     DL+    
Sbjct: 509 LFNEMLCQESDSQPDVVTYNILLRAL---CKQNSI-SHAIDLLNSMLDRGCNPDLITCNI 564

Query: 590 VLAHL-VRCQDEQNERHLMAILSATKHK 616
            L  L  +    Q+ R  +  L    HK
Sbjct: 565 FLNALREKLNPPQDGREFLDELVVRLHK 592


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 154/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   + E++       +  F   N
Sbjct: 89  AIECYRLTREHKFWVPFDTCRKVL-EHLMKLKYFKLVWXFYKEILECGYPASLYFF---N 144

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    S+N LM  ++  G   + F +  +M   
Sbjct: 145 ILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS 204

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM ++   P+   F +L+D   K GR+D +
Sbjct: 205 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 264

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M+VY +M      P    Y +LI    K G L  A  L DEMR+ G +P+   +T +I+ 
Sbjct: 265 MEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDG 324

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M S GLRP 
Sbjct: 325 CCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPD 384

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 385 TGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 427



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 150/348 (43%), Gaps = 1/348 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 69  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFY 128

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  ++ V+  +   G RPS   + +L+  Y + 
Sbjct: 129 KEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRL 188

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 189 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTF 248

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM+ 
Sbjct: 249 TTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRM 308

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D +S + ++    K+G ++ A    + M    IR ++     L     +      
Sbjct: 309 KGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSID 368

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           A+ +L   +    + D   YT ++    +  D      L+  +    H
Sbjct: 369 AEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH 416


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 200/420 (47%), Gaps = 10/420 (2%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++FD+L +    + ML   + +   +  +GI L   + N +++ L + ++++     F+ 
Sbjct: 137 VVFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEV 196

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPY-----KAFEIYESMEKGECSLDGSTYELMIPSL 315
           ++    + +  +Y ++M  F  +G+       +A EI   +     + +  TY   I  L
Sbjct: 197 LIKFGPRPNIHTYTIMMNFFC-RGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYIKGL 255

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            K G    A +L Q +  +N   + + F +++  + + G LD + +V+ EM+  G  P  
Sbjct: 256 CKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDV 315

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y  LI+ + + G++D A  ++ EMR +G  PN   ++++I+   K G++D A+ +F +
Sbjct: 316 YSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEE 375

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M+ +G LP   +YS L++     G +DSA+K +  MTS    P    Y +L+    K K 
Sbjct: 376 MKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQ 435

Query: 496 VDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
              A K    M+ +G   D ++ + +L +Y +    + AL        +G+  N +   +
Sbjct: 436 FANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNE 495

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK 614
                 + ++ E A  LL   ++     D+V Y+++++   +     +E+ +M  +  TK
Sbjct: 496 FIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAK--RLNSEKAVMLFIKMTK 553



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 168/370 (45%), Gaps = 2/370 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N VI  L +   L+ +   FK++ +S    D  SY++L+  F  KG   +A E+++ M
Sbjct: 282 CFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEM 341

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  +  +Y ++I    K GR+D A+++F+EMK     P    ++ L+D   + G +
Sbjct: 342 RNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDM 401

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D+++K + EM      PSA  Y SLI+ Y K+ +   AL+ +  M+  G  P+      I
Sbjct: 402 DSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHI 461

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  + +    + A+++    +  G    P +Y+  +         + A++L   M    +
Sbjct: 462 LSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNV 521

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P +  Y+ L++  AKR   + A  + ++M  +G + +V    +L+ ++I D  +D A R
Sbjct: 522 LPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYR 581

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             + M  S +  +      L            A+ L +         ++V YT  +   +
Sbjct: 582 LFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYL 641

Query: 596 RCQDEQNERH 605
           +  ++ N+ H
Sbjct: 642 K-LNKNNQAH 650



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 163/381 (42%), Gaps = 4/381 (1%)

Query: 215 GMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           G+L    E+  +   +GI   ++S Y+ +I    +  +++ +   FK++ +S    +  S
Sbjct: 294 GILDEASEVFKEMKNSGILPDVYS-YSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYS 352

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y++L+  F  +G   KA E++E M+      D  +Y ++I    + G +D+AIK ++EM 
Sbjct: 353 YSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMT 412

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
             NF PS   + SL+    K+ +   ++K +  MQ  G  P       ++  Y +    +
Sbjct: 413 SNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFN 472

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            AL L ++ +  G   N   +   I    +    + A+ +   M +   LP    YS L+
Sbjct: 473 KALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLI 532

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK-TMGY 511
              A     + A+ L+  MT  G+   + TYT L+ L      +DVA ++   MK +  Y
Sbjct: 533 SCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVY 592

Query: 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
              ++ + ++  +   G +  A      M   G   N           +K      A  L
Sbjct: 593 PDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKL 652

Query: 572 LETYVESAAKVDLVLYTSVLA 592
            E   E     D +LYT ++A
Sbjct: 653 YEKMKERGVYPDQILYTMLIA 673



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 160/374 (42%), Gaps = 14/374 (3%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD----SSKNGIS 233
           D +L +F   K  S  +P    Y +L D      D D  +  ++EM  +    S+ N  S
Sbjct: 367 DKALEVFEEMK-NSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCS 425

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
           L   Y +  Q+   A+ L+     F+ +       DT + N +++++  K    KA  + 
Sbjct: 426 LIKGYYKSKQF---ANALKE----FRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALS 478

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           E  ++     +  +Y   I  + +    + A++L   M +RN  P    +++L+    K 
Sbjct: 479 EKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKR 538

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
              + ++ ++++M   G   +   Y  LI  +    K+D A RL+  M+ +   P+   +
Sbjct: 539 LNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAY 598

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
           T ++     +G++  A ++F +M R G  P   TY+C +  +    + + A KLY  M  
Sbjct: 599 TSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKE 658

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD--VSASDVLMVYIKDGSVD 531
            G+ P    YT L+        ++ A  +  EMK  G      V  + ++  YIK    D
Sbjct: 659 RGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRD 718

Query: 532 HALRWLRFMGSSGI 545
            A +    M + G+
Sbjct: 719 QAEKLYEEMRAKGL 732


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/489 (23%), Positives = 218/489 (44%), Gaps = 31/489 (6%)

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKV-------------INDSDTSL 181
           V++IVE++   +   + +  L  ++   K     QAL V             I   +T L
Sbjct: 62  VSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLL 121

Query: 182 SLF----RWAKRQSWYV--------PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
           + F    +W K +S +         P  + Y +L  +  + ++F+      D M  +  K
Sbjct: 122 NAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFK 181

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
             +  FS Y+ VI  LAKA KL+ +   F ++ +     D   YN+L+  FL +     A
Sbjct: 182 PDV--FS-YSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTA 238

Query: 290 FEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
            E+++ + E      +  T+ +MI  L+K GR+D  +K+++ MK+         ++SL+ 
Sbjct: 239 MELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIH 298

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
            +  AG +D +  V+ E+           Y +++  + + GK+  +L LW  M       
Sbjct: 299 GLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SV 357

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           N   + ++I+   ++GK+D A  I+  M   G+    +TY   +     +G V+ A+ + 
Sbjct: 358 NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVM 417

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKD 527
             + S+G    +  Y +++  L K+K ++ A+ ++ EM   G  ++    + L+   I+D
Sbjct: 418 QEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRD 477

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
             +  A  +LR MG +G R        L     K   +  A   ++  +E+  K DL  Y
Sbjct: 478 SRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTY 537

Query: 588 TSVLAHLVR 596
           + +L  L R
Sbjct: 538 SILLCGLCR 546



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 110/537 (20%), Positives = 221/537 (41%), Gaps = 29/537 (5%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H+ + LK   +   + +LF  A R   Y      Y  +   L+E+R  + +  + + +  
Sbjct: 12  HVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRS 71

Query: 226 DSSK--NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLN 282
              K    ++L      VI+   K    + +   FK++ +   C+   +SYN L+  F+ 
Sbjct: 72  QECKCDEDVAL-----SVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVE 126

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
                K   ++   E    + +  TY ++I    K    + A      M +  F+P    
Sbjct: 127 AKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFS 186

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE-M 401
           ++++++ + KAG+LD +++++ EM   G  P    Y  LI+ + K     TA+ LWD  +
Sbjct: 187 YSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLL 246

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
             +   PN     ++I   +K G++D  + I+  M++        TYS L+     +G V
Sbjct: 247 EDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNV 306

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI--LLEMKTMGYSVDVSASD 519
           D A  ++N +        + TY  +L    +   +  + ++  ++E K    SV++ + +
Sbjct: 307 DKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN---SVNIVSYN 363

Query: 520 VLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
           +L+   +++G +D A    R M + G   +             N     A  +++    S
Sbjct: 364 ILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESS 423

Query: 579 AAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGP---EQRKQPV 635
              +D+  Y S++  L + +  +   +L+  +S    + ++ +C    G    + R    
Sbjct: 424 GGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEA 483

Query: 636 LSFVREFFHGIDYELEEGAARYFV---NVLLNYLVLMGQINRARCVWKVAYENKLFP 689
             F+R        E+ +   R  V   N+L+  L   G+   A    K   EN   P
Sbjct: 484 SFFLR--------EMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKP 532



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 157/348 (45%), Gaps = 5/348 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L ++ + D   S+F+E+  D  K  I + + YN ++    +  K++ S   ++
Sbjct: 293 YSSLIHGLCDAGNVDKAESVFNEL--DERKASIDVVT-YNTMLGGFCRCGKIKESLELWR 349

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +++    ++  SYN+L+   L  G   +A  I+  M     + D +TY + I  L  +G
Sbjct: 350 -IMEHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNG 408

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            ++ A+ + QE++          +AS++D + K  RL+ +  +  EM   G   ++ +  
Sbjct: 409 YVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCN 468

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI    +  +L  A     EM   G RP    + ++I    K+GK   A +   +M   
Sbjct: 469 ALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLEN 528

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G+ P   TYS LL       ++D A++L++    +GL   +  +  L+  L     +D A
Sbjct: 529 GWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDA 588

Query: 500 AKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIR 546
             ++  M+    + ++   + LM  + K G  + A     +M   G++
Sbjct: 589 MTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQ 636



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 111/264 (42%)

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           ++V  S   +D  +Y  ++     K    +A  + + M K    L+      +I  L + 
Sbjct: 418 QEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRD 477

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
            RL  A    +EM +   RP+   +  L+  + KAG+   +     EM   G +P    Y
Sbjct: 478 SRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTY 537

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             L+    +  K+D AL LW +   +G   +  +  ++I      GKLD AM++  +ME 
Sbjct: 538 SILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEH 597

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
                   TY+ L+E     G  + A  ++  M   GL+P + +Y  ++  L   + V  
Sbjct: 598 RNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSY 657

Query: 499 AAKILLEMKTMGYSVDVSASDVLM 522
           A +   + +  G    V   ++L+
Sbjct: 658 AMEFFDDARNHGIFPTVYTWNILV 681



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 110/257 (42%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AY  +I  L K  +LE +    K++     ++++   N L+   +      +A      M
Sbjct: 431 AYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREM 490

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K  C     +Y ++I  L K+G+   A    +EM E  ++P    ++ L+  + +  ++
Sbjct: 491 GKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKI 550

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +++++ +    G      M+  LI      GKLD A+ +   M       N   +  +
Sbjct: 551 DLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTL 610

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +E   K G  + A  I+  M + G  P   +Y+ +++       V  AM+ ++   + G+
Sbjct: 611 MEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGI 670

Query: 477 RPGLSTYTALLTLLAKR 493
            P + T+  L+  +  R
Sbjct: 671 FPTVYTWNILVRAVVNR 687


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 180/399 (45%), Gaps = 5/399 (1%)

Query: 200 YVMLFDVLNE-SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y ++ DV  +  R ++ +L L DEM   S   G   F+  + VI    +   L+ +   F
Sbjct: 247 YNVMLDVYGKMGRSWNKILGLLDEM--RSKGLGFDEFTC-STVISACGREGLLDEAKEFF 303

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             +        T +YN L+ +F   G+  +A  I + ME   C  D  TY  ++ +  ++
Sbjct: 304 VGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRA 363

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G  +    L   M E   +P+   + +++++ G+A ++D ++ +Y +M+  G  P+   Y
Sbjct: 364 GFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTY 423

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +++    K  + +  +++  +M++ G  PN   +  ++      G       +F +M+ 
Sbjct: 424 NAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKS 483

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            GF P   T++ L+      G    A K+Y+ M  AG  P ++TY ALL  LA+R     
Sbjct: 484 CGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRT 543

Query: 499 AAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A  ++ +MK  G+   + S S +L  Y K G V    R  + +    I  +  ++R L  
Sbjct: 544 AESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLIL 603

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  K       +   +   +   K DLV++ S+L+   R
Sbjct: 604 ANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSR 642



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 163/355 (45%), Gaps = 8/355 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE-- 252
           P    Y  + +    +   D  LSL+D+M        +     YN ++  L K  + E  
Sbjct: 383 PNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVC---TYNAILGMLGKKSQSEEM 439

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
           M   C  KV    C  +  ++N ++++  NKG+      +++ M+      D  T+  +I
Sbjct: 440 MKILCDMKV--DGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLI 497

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            +  + G    A K++ EM E  F PS   + +L++++ + G   T+  V  +M+  G +
Sbjct: 498 TASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFK 557

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           PS   Y  ++ SYAK G +    R+  ++      P++ L   +I ++ K   L      
Sbjct: 558 PSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERA 617

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  +++ G+ P    ++ +L M +     D A ++ + +   GL+P L TY +L+ L A+
Sbjct: 618 FQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYAR 677

Query: 493 RKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
                 A +IL E++  G   D +S + V+  + + G +  ALR L  M S GIR
Sbjct: 678 GGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIR 732



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/407 (21%), Positives = 185/407 (45%), Gaps = 13/407 (3%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           + +   L+ S D +  + LF+ +V +     ++L    N+ ++ +A+    E  +    K
Sbjct: 139 IGVLKALDLSGDCERAILLFEWLVLNLGTGNVNL---DNQAVELMARILGRESQHSIASK 195

Query: 261 VLD----SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
           + D     D  +D ++Y  ++  +   G   +A  I+E M +   S    TY +M+    
Sbjct: 196 LFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYG 255

Query: 317 KSGR-LDAAIKLFQEMKERNFRPSFNIF--ASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           K GR  +  + L  EM+ +     F+ F  ++++ + G+ G LD + + ++ ++  G+ P
Sbjct: 256 KMGRSWNKILGLLDEMRSKGL--GFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAP 313

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y +L++ + KAG    AL +  EM      P+   +  ++ ++ ++G  +   ++ 
Sbjct: 314 GTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALI 373

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G  P   TY+ ++  +  + QVD A+ LY+ M  +G  P + TY A+L +L K+
Sbjct: 374 DTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKK 433

Query: 494 KLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
              +   KIL +MK  G + + ++ + +L +    G   +  R  + M S G   +    
Sbjct: 434 SQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTF 493

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
             L  +  +      A+ + +  +E+     +  Y ++L  L R  D
Sbjct: 494 NTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGD 540



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/276 (19%), Positives = 116/276 (42%), Gaps = 3/276 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           ++DEM+       ++    YN ++  LA+      +    K + +   K    SY++++ 
Sbjct: 512 IYDEMLEAGFTPSVA---TYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILN 568

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +   G       I + +  G           +I +  K   L    + FQ +++  ++P
Sbjct: 569 SYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKP 628

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
              +F S++    +    D + ++   +Q CG +P    Y SL++ YA+ G+   A  + 
Sbjct: 629 DLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEIL 688

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
            E++ +G + +   +  +I+   + G +  A+   ++M   G  P   TY+  +  +A+ 
Sbjct: 689 RELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAK 748

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           G      ++ + MT    RP   TY  ++    K K
Sbjct: 749 GMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAK 784



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/180 (18%), Positives = 77/180 (42%)

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +++++K     D   +  M+   ++    D A ++   ++E   +P    + SL+D   +
Sbjct: 618 FQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYAR 677

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G    + ++  E+Q  G +     Y ++I+ + + G +  ALR   EM   G RP    
Sbjct: 678 GGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVT 737

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +   +  +A  G       + + M +    P   TY  +++ +  + +   AM   +++T
Sbjct: 738 YNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEAMDFVSTIT 797



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN LM L+   G  +KA EI   ++      D  +Y  +I    + G +  A++  
Sbjct: 664 DLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTL 723

Query: 329 QEMKERNFRP---SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            EM  R  RP   ++N F     + G    +D  +  YM    C  RP+   Y  +++ Y
Sbjct: 724 SEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLS-YMTKHDC--RPNELTYKIVVDGY 780

Query: 386 AKAGKLDTAL 395
            KA K   A+
Sbjct: 781 CKAKKFKEAM 790


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 176/393 (44%), Gaps = 4/393 (1%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++L  + +E+R  +  L L   M  D          +Y  VI    K    + +Y  + +
Sbjct: 163 ILLKGLCDENRSQEA-LELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHE 221

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +LD     D  +YN ++          KA E+  +M K     D  TY  ++     SG+
Sbjct: 222 MLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 281

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
              AI   ++M+     P    ++ L+D + K GR   + K++  M   G +P    Y +
Sbjct: 282 PKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGT 341

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++ YA  G L     L D M   G  P+  +F+++I ++A  GK+D AM +F+ M + G
Sbjct: 342 LLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQG 401

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY  ++ +   SG+V+ AM  +  M   GL PG   Y +L+  L      + A 
Sbjct: 402 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE 461

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES- 558
           +++LEM   G  ++ +  + ++  + K+G V  + +    M   G++ N      L    
Sbjct: 462 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGY 521

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           C+   + E+ K LL   V    K + V Y++++
Sbjct: 522 CLAGKMDEAMK-LLSGMVSVGLKPNTVTYSTLI 553



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/444 (23%), Positives = 192/444 (43%), Gaps = 39/444 (8%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R     P    Y +L D L ++        +FD M     K  I+    Y  ++Q  A  
Sbjct: 293 RSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT---TYGTLLQGYATK 349

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             L   +     ++ +    D   +++L+  + N+G   +A  ++  M +   + +  TY
Sbjct: 350 GALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTY 409

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPS---FN------------------------ 341
             +I  L KSGR++ A+  F++M +    P    +N                        
Sbjct: 410 GAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD 469

Query: 342 --------IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
                    F S++DS  K GR+  S K++  M   G +P+   Y +LI  Y  AGK+D 
Sbjct: 470 RGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDE 529

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A++L   M   G +PN   ++ +I  + K  +++ A+ +F +ME +G  P   TY+ +L+
Sbjct: 530 AMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ 589

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
               + +  +A +LY  +T +G +  LSTY  +L  L K KL D A ++   +  M   +
Sbjct: 590 GLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKL 649

Query: 514 DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           +    ++++   +K G  D A        S+G+  N +  R + E+ +   L E    L 
Sbjct: 650 EARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 709

Query: 573 ETYVESAAKVDLVLYTSVLAHLVR 596
            +  ++   VD  +   ++  L++
Sbjct: 710 LSMEDNGCTVDSGMLNFIVRELLQ 733



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 131/354 (37%), Gaps = 43/354 (12%)

Query: 286 PYKAFEIYESMEKG---ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +    E + D  TY ++I    ++GRLD        + ++ FR     
Sbjct: 65  PAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIA 124

Query: 343 FASLVDSMGKAGRLDTSMKVYM-------------------------------------- 364
           F  L+  +    R   +M + +                                      
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMM 184

Query: 365 -EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            + +G G  P    Y ++I  + K G  D A   + EM   G  P+   +  II +  K+
Sbjct: 185 ADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKA 244

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
             +D AM +   M + G +P   TY+ +L  + SSGQ   A+     M S G+ P + TY
Sbjct: 245 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY 304

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGS 542
           + L+  L K      A KI   M   G   +++    +L  Y   G++      L  M  
Sbjct: 305 SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR 364

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +GI  ++++   L  +       + A  +     +     + V Y +V+  L +
Sbjct: 365 NGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCK 418



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/384 (19%), Positives = 148/384 (38%), Gaps = 38/384 (9%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    Y  +  +L +S   +  +  F++M+ +    G  +   YN +I  L   
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIV---YNSLIHGLCTC 454

Query: 249 DK-----------LEMSYCC----FKKVLDSDCK----IDTQ----------------SY 273
           +K           L+   C     F  ++DS CK    I+++                +Y
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N L+  +   G   +A ++   M       +  TY  +I    K  R++ A+ LF+EM+ 
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    +  ++  + +  R   + ++Y+ +   G +     Y  ++    K    D 
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           AL+++  + +   +     F ++I++  K G+ D A  +F      G +P   TY  + E
Sbjct: 635 ALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 694

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G ++   +L+ SM   G          ++  L +R  +  A   L  +    +S+
Sbjct: 695 NIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSL 754

Query: 514 DVSASDVLMVYIKDGSVDHALRWL 537
           + S + + +  +  G      R+L
Sbjct: 755 EASTASLFIDLLSGGKYQEYYRFL 778


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 187/408 (45%), Gaps = 11/408 (2%)

Query: 172 KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           K +N  D   +  R   +++  VP +E + +L +    +  F+    LF +M     K G
Sbjct: 116 KSLNIEDAEKTFNR--MQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQM----QKRG 169

Query: 232 ISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
            S    A N  +  L  A +   +   F+ +   +C+ +  +YN ++ ++   G P KA 
Sbjct: 170 YSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAE 229

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            +Y SM +  C  +  T+  ++ + A+ G    A + F +++E +++P    + +L+++ 
Sbjct: 230 MLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAY 289

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            + G    +++++  MQ  G  P    +  LI +Y +AG  + A +++  M+ AGF PN 
Sbjct: 290 SQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNL 349

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
               +++ ++A++G+++ A  + + MER G  P    Y+ L+  +  SG+ +    L   
Sbjct: 350 KSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHEDMEALLAK 409

Query: 471 M---TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIK 526
           M   +S   +P + TY  L+ + A+   +  A ++   +  +    D +    LM  Y K
Sbjct: 410 MVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYAK 469

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
                     L+ M  SG R +    R LF +C      E    L+E+
Sbjct: 470 KKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVEQVTQLMES 517



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 139/327 (42%), Gaps = 39/327 (11%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D   Y L+I +  KS  ++ A K F  M+E    P+   F  L++    AG  + + +++
Sbjct: 103 DLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEELF 162

Query: 364 MEMQGCGH-----------------------------------RPSAPMYVSLIESYAKA 388
           ++MQ  G+                                    P+   Y  +I  Y KA
Sbjct: 163 VQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKA 222

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+   A  L+  MR A   PN   FT ++ + A+ G    A   F  ++   + P    Y
Sbjct: 223 GEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAY 282

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+E ++  G    A++++ +M   G  P   ++  L+    +  L + A KI   M++
Sbjct: 283 NALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQS 342

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G+S ++ ++ +L+  Y + G V+ A   +  M   G + +  I   L  +   +  +E 
Sbjct: 343 AGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHED 402

Query: 568 AKPLLETYVESAAKV---DLVLYTSVL 591
            + LL   V+S++K    D+  Y +++
Sbjct: 403 MEALLAKMVKSSSKQTKPDIGTYNTLI 429



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 109/240 (45%), Gaps = 1/240 (0%)

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
           FRP    +  L+D+ GK+  ++ + K +  MQ     P+   +  LI  Y  AG  + A 
Sbjct: 100 FRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAE 159

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            L+ +M+  G+ P        +     + +   A ++F D+E+    P   TY+ ++ ++
Sbjct: 160 ELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIY 219

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             +G+   A  LY SM  A   P + T+TAL+   A++ L   A +   +++   Y  D 
Sbjct: 220 GKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDH 279

Query: 516 SASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
            A + LM  Y + GS   AL   + M  +G   +      L  +  +  LYE A+ + ++
Sbjct: 280 YAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKS 339



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 111/238 (46%), Gaps = 3/238 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AYN +++  ++      +   F+ +  + C  DT S+N+L+  +   GL   A +I++SM
Sbjct: 281 AYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSM 340

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +    S +  +  L++ + A++GR++ A +L   M+    +P   I+ +L+++ G +GR 
Sbjct: 341 QSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRH 400

Query: 357 DTSMKVYMEMQGCGHRPSAP---MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           +    +  +M     + + P    Y +LI+ YA+AG +  A  L+  +      P+   +
Sbjct: 401 EDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARLKLVPDATTW 460

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           T ++  +AK        SI   M  +G      T   L     S  QV+   +L  S+
Sbjct: 461 TALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVEQVTQLMESL 518


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 124/581 (21%), Positives = 243/581 (41%), Gaps = 43/581 (7%)

Query: 237 AYNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           +YN VI    K    L  +   F+++L      D +++N L+      G    A  +++ 
Sbjct: 281 SYNAVIDACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDE 340

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M       D  TY   + ++ K G +  A+++  +M+  N +P+   +++L+D   K  +
Sbjct: 341 MIHLGSGRDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEK 400

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            D ++K+  +M+    +     Y +L+  Y K GK D    + +EM   G   +   +  
Sbjct: 401 YDEALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNS 460

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I  + K G+LD+   +  DM   G  P+  TYS L+++++ +G    A  +Y     +G
Sbjct: 461 LINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESG 520

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-------VYIKDG 528
           L+  +  +++ +  LAK  LV+ A  +L EM  MG   +V   + ++       ++ ++ 
Sbjct: 521 LKADVVLFSSFIDTLAKNGLVECALSLLDEMMKMGIKPNVVTYNTIIDAFGKSKIFTEED 580

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK-----PLLETYVESAAKVD 583
           S    +  +   G   +R  N ++R    S     +  S +      L +  V+   + +
Sbjct: 581 SDIGDMGIVGVYGGQVVRVTNPVIRG-GRSATDVRMRRSQELFFILELFQKMVQQGVRPN 639

Query: 584 LVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFF 643
           +V ++++L    RC   ++   L+  L    +  +    GL  G  +      S  R  F
Sbjct: 640 VVTFSAILNACSRCNSFEDAALLLEQLRLFDNSVYGVAYGLLMGHRE----AWSQARSLF 695

Query: 644 HGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWS-- 701
           + +   ++   +  F N L + L   GQ   A+ V       +++           W   
Sbjct: 696 NQLG-RMDSPTSSAFYNALTDVLWHFGQRQGAQQVVLEGVNRRVWEN--------TWGDF 746

Query: 702 -LDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIA 750
            LD+  +S GAA   V   L   R  +     +P  + ++TG           TL+ VI 
Sbjct: 747 CLDLHLMSCGAAQAMVHAWLLNVRSIVFEGRAMPEFLSILTGWGKHSKVAGSSTLRRVIE 806

Query: 751 QMLSSVESPFEVSKVVLR---APGDSVMEWFKKPIVQQFLL 788
            +L S+ +PF+  +  +    +P   V  W ++      LL
Sbjct: 807 ALLLSIGAPFQAERFNIGRFVSPSALVSAWLRESGTINILL 847



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 161/378 (42%), Gaps = 48/378 (12%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q    P  + +  L    + +   +   ++FDEM+H  S   I     YN  +  + K  
Sbjct: 308 QDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDI---YTYNTFVDAICKCG 364

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            + ++      +  ++ K +  +Y+ LM  F       +A ++ E M+     LD   Y 
Sbjct: 365 NMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYN 424

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++    K+G+ D    + +EM++         + SL++  GK GRLD    +  +M+  
Sbjct: 425 TLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQ 484

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  PS   Y +LI+ Y+KAG    A  ++ + + +G + +  LF+  I++ AK+G ++ A
Sbjct: 485 GVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECA 544

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASS--------------------GQV-------- 461
           +S+  +M + G  P   TY+ +++    S                    GQV        
Sbjct: 545 LSLLDEMMKMGIKPNVVTYNTIIDAFGKSKIFTEEDSDIGDMGIVGVYGGQVVRVTNPVI 604

Query: 462 -------DSAMK----------LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
                  D  M+          L+  M   G+RP + T++A+L   ++    + AA +L 
Sbjct: 605 RGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNSFEDAALLLE 664

Query: 505 EMKTMGYSVDVSASDVLM 522
           +++    SV   A  +LM
Sbjct: 665 QLRLFDNSVYGVAYGLLM 682



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 144/349 (41%), Gaps = 40/349 (11%)

Query: 288 KAFEIYES---MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           +AFE++ +   +  G     G      I +L K GR D A + F      ++  +    +
Sbjct: 189 RAFEVFYAALPLVGGGAVDKGKLLTAAIGALGKMGRPDLARRAFDTGIAGSYGNTVFAHS 248

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----------------- 387
           +L+ +  ++G    +M V   M+G G RP+   Y ++I++  K                 
Sbjct: 249 ALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLQ 308

Query: 388 -------------------AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
                              AG L+ A  ++DEM   G   +   +   +++  K G + +
Sbjct: 309 DGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMGL 368

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+ +  DME     P   TYS L++  +   + D A+KL   M S  ++     Y  LL 
Sbjct: 369 ALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLA 428

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
           +  K    D  A +  EM+ +G   D V+ + ++  Y K G +D     ++ M + G+  
Sbjct: 429 IYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAP 488

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +      L +   K  ++  A  +   + ES  K D+VL++S +  L +
Sbjct: 489 SVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAK 537


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 166/357 (46%), Gaps = 5/357 (1%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFD-VLNESRDFDGMLSLFDEMVH 225
           + ++   +N  + +LS+   AK    ++PG   Y  + D V+   +       +F EMV 
Sbjct: 138 VVKSCARVNLINKALSIVNLAKSYG-FMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVE 196

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
                 +     YN +I+    A  LEM    F ++  + C  +  +YN ++  +     
Sbjct: 197 SGVSPNVY---TYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +AF++   M     + +  +Y ++I  L + G++    ++ +EM +R + P    F +
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNT 313

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L++     G    ++ ++ EM   G  P+   Y +LI S  KAG L+ A+   D+MR  G
Sbjct: 314 LINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRG 373

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             PN   +T +I+  ++ G L  A  I  +M   GF PT  TY+ L+  H   G+++ A 
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            L   M   G  P + +Y+ +++   + + ++ A ++ +EM   G S DV+    L+
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 172/398 (43%), Gaps = 23/398 (5%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFS 236
           +TS  L   +KR+  YVP    +  L +      +F   L L  EMV    KNG+S    
Sbjct: 291 ETSEILEEMSKRR--YVPDRVTFNTLINGYCNVGNFHQALVLHAEMV----KNGLSPNVV 344

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  + KA  L  +     ++ D     + ++Y  L+  F  +G   +A++I + M
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   +    TY  +I      GR++ A  L QEM ER F P    +++++    +   L
Sbjct: 405 VENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQEL 464

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + ++ +EM   G  P    Y SLI+   K  +L     L+ EM   G  P+   +T +
Sbjct: 465 EKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSL 524

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL--------- 467
           I ++   G LD A+ +  +M + GF P   TY+ L+       +   A +L         
Sbjct: 525 INAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEES 584

Query: 468 ------YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
                 YN++          +  AL+     + L++ A ++L  M   GY ++    +V+
Sbjct: 585 VPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVI 644

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
           +  + K G+++ A    + M  SG   ++  +  L +S
Sbjct: 645 IHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKS 682



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 140/337 (41%), Gaps = 37/337 (10%)

Query: 300 ECSLDGSTYELMIPSLAK--------------------------SGRLDAAIK------- 326
           +C    + ++L++ S A+                          +  LDA I+       
Sbjct: 127 QCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKI 186

Query: 327 ---LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
              +F+EM E    P+   +  L+     AG L+  +  + EM+  G  P+   Y ++I+
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIID 246

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           +Y K  K+  A +L   M + G  PN   + ++I    + G++     I  +M +  ++P
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP 306

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              T++ L+  + + G    A+ L+  M   GL P + TYT L+  + K   ++ A + L
Sbjct: 307 DRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFL 366

Query: 504 LEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            +M+  G   +      L+  + + G +  A + ++ M  +G          L       
Sbjct: 367 DQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCIL 426

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              E A  LL+  +E     D+V Y+++++   R Q+
Sbjct: 427 GRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQE 463



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 119/308 (38%), Gaps = 55/308 (17%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKA 248
           +  ++P    Y  +      +++ +    L  EMV      GIS   + Y+ +IQ L K 
Sbjct: 441 ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMV----AKGISPDVATYSSLIQGLCKQ 496

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            +L      F+++L      D  +Y  L+  +  +G   KA  +++ M +   S D  TY
Sbjct: 497 RRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTY 556

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK---------------A 353
            ++I    K  R   A +L  ++      P+   + +L+D+                   
Sbjct: 557 NVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMK 616

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN---- 409
           G ++ + +V   M   G++ +  +Y  +I  ++K G ++ A  L+ EM  +GF P+    
Sbjct: 617 GLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTI 676

Query: 410 -------------------------------FGLFTMIIESHAKSGKLDIAMSIFTDMER 438
                                            L  ++I  ++K G +D   ++  DM  
Sbjct: 677 MALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMAL 736

Query: 439 AGFLPTPS 446
           +G LP  S
Sbjct: 737 SGLLPYSS 744


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 168/367 (45%), Gaps = 2/367 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L K  +   +    ++V  +  + +   YN ++       L  +AF+++  M
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I      G+L  AI LF +M   N +P    F  LV++  K G++
Sbjct: 252 VSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
                V+  M   G +P+   Y SL++ Y    +++ A  +++ M   G  P+   ++++
Sbjct: 312 KEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K  K D AM++F +M R   +P   TYS L++  + SG++  A++L + M   G+
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P + TY ++L  L K   VD A  +L + K  G+  D+S   +L+  + + G ++ A +
Sbjct: 432 PPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARK 491

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   G   + +    + +      L+  A  LL    ++    D   Y  ++  L 
Sbjct: 492 VFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLF 551

Query: 596 RCQDEQN 602
           + +DE +
Sbjct: 552 K-KDEND 557



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/433 (22%), Positives = 194/433 (44%), Gaps = 5/433 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           ND D ++SLF    R++   P  E +  +   L +S+ +  +L L  +M     K  +  
Sbjct: 64  NDVDDAVSLFNRLLRRNTTPPAFE-FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLV- 121

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
               N +I    +   +  ++  F K+L      DT ++  L      KG   +AF  ++
Sbjct: 122 --NCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHD 179

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            +       D  +Y  +I  L K G   AA+ L Q +     +P+  ++ +++DSM K  
Sbjct: 180 KVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVK 239

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            ++ +  ++ EM   G  P    Y +LI  +   GKL  A+ L+++M +   +P+   F 
Sbjct: 240 LVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFN 299

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           +++ +  K GK+    ++F  M + G  P   TY+ L++ +    +V+ A  ++N+M   
Sbjct: 300 ILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG 359

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHA 533
           G+ P + +Y+ ++    K K  D A  +  EM       D V+ S ++    K G + +A
Sbjct: 360 GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYA 419

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L+ +  M   G+  N      + ++  K    + A  LL  + +   + D+  Y+ ++  
Sbjct: 420 LQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKG 479

Query: 594 LVRCQDEQNERHL 606
           L +    ++ R +
Sbjct: 480 LCQSGKLEDARKV 492



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 154/307 (50%), Gaps = 6/307 (1%)

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263
           F +L + +D    + LF++M+ ++ K  +  F   N ++    K  K++     F  ++ 
Sbjct: 270 FCILGKLKD---AIDLFNKMILENIKPDVYTF---NILVNAFCKDGKMKEGKTVFDMMMK 323

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
              K +  +YN LM  +       KA  I+ +M +G  + D  +Y +MI    K  + D 
Sbjct: 324 QGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDE 383

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A+ LF+EM  +N  P    ++SL+D + K+GR+  ++++  +M   G  P+   Y S+++
Sbjct: 384 AMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILD 443

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           +  K  ++D A+ L  + +  GF+P+   ++++I+   +SGKL+ A  +F D+   G+  
Sbjct: 444 ALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNL 503

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
               Y+ +++     G  + A+ L + M   G  P   TY  ++  L K+   D+A K+L
Sbjct: 504 DVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLL 563

Query: 504 LEMKTMG 510
            EM   G
Sbjct: 564 REMIARG 570



 Score =  102 bits (255), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 143/296 (48%), Gaps = 9/296 (3%)

Query: 201 VMLFDVLNESRDFDGML----SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
           V  F++L  +   DG +    ++FD M+    K     F  YN ++       ++  +  
Sbjct: 295 VYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN---FVTYNSLMDGYCLVKEVNKAKS 351

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            F  +       D QSY++++  F       +A  +++ M +     D  TY  +I  L+
Sbjct: 352 IFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLS 411

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           KSGR+  A++L  +M +R   P+   + S++D++ K  ++D ++ +  + +  G +P   
Sbjct: 412 KSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDIS 471

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y  LI+   ++GKL+ A ++++++ + G+  +   +T++I+     G  + A+++ + M
Sbjct: 472 TYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKM 531

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           E  G +P   TY  ++       + D A KL   M + GL   L+ Y   LT LA+
Sbjct: 532 EDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLP--LNFYDLYLTRLAQ 585



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/308 (18%), Positives = 120/308 (38%), Gaps = 44/308 (14%)

Query: 328 FQEMKER--NFRP------SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           FQ +K    NF P      +F  ++S   +      +D ++ ++  +      P A  + 
Sbjct: 30  FQFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFN 89

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            ++ S  K+    T L L  +M   G +PN     ++I    + G +  A S+F  + + 
Sbjct: 90  KILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKM 149

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG------------------------ 475
           G++P   T++ L +     GQ+  A   ++ + + G                        
Sbjct: 150 GYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAA 209

Query: 476 -----------LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMV 523
                      ++P +  Y  ++  + K KLV+ A  +  EM + G S D V+ S ++  
Sbjct: 210 LDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISG 269

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           +   G +  A+     M    I+ + +    L  +  K+   +  K + +  ++   K +
Sbjct: 270 FCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN 329

Query: 584 LVLYTSVL 591
            V Y S++
Sbjct: 330 FVTYNSLM 337



 Score = 44.7 bits (104), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 68/349 (19%), Positives = 132/349 (37%), Gaps = 17/349 (4%)

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y S   ++     +D A+ L++ +      P    F  I+ S  KS      + +   ME
Sbjct: 53  YSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKME 112

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P     + L+      G +  A  ++  +   G  P   T+T L   L  +  + 
Sbjct: 113 FRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQ 172

Query: 498 VAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A     ++  +G+  D +S   ++    K G    AL  L+ +  + ++ N  +   + 
Sbjct: 173 QAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTII 232

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH---LVRCQDEQNERHLMAILSAT 613
           +S  K  L   A  L    V      D+V Y+++++    L + +D  +  + M IL   
Sbjct: 233 DSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKM-ILENI 291

Query: 614 KHKAHAF--LCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV--NVLLNYLVLM 669
           K   + F  L   F    + K+    F        D  +++G    FV  N L++   L+
Sbjct: 292 KPDVYTFNILVNAFCKDGKMKEGKTVF--------DMMMKQGIKPNFVTYNSLMDGYCLV 343

Query: 670 GQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMH 718
            ++N+A+ ++    +  + P    +   I     ++       L   MH
Sbjct: 344 KEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMH 392


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 182/412 (44%), Gaps = 5/412 (1%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           SLF   K     +P    +  L D   +  + D +  L +EM     K  +     YN +
Sbjct: 209 SLFSRMKEMGC-LPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVV---TYNAL 264

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           I    K  ++E +Y  F  +       +  +++  +  F  +GL  +A +++  M     
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           +L+  TY  +I    K+GRLD AI L  EM  +    +   +  LVD + K  ++  +  
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAED 384

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           V   M+  G R +  +Y +LI  +      + AL L  EM+  G   +  L+  +I+   
Sbjct: 385 VLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLC 444

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
              KLD A S+ T M+ +G  P    Y+ +++    SG+V  A+ +   +  +G +P + 
Sbjct: 445 NVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVI 504

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFM 540
           TY AL+  L K   +D A     +M+ +G   +V A   L+  + K+G ++ A++    M
Sbjct: 505 TYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM 564

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
              G+  +  +   L +  +K      A  L    ++S  ++DL  YT  ++
Sbjct: 565 VHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFIS 616



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 143/312 (45%), Gaps = 1/312 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N VI +L K  +L  +   F ++ +  C  D  ++N L+  +   G   +  ++ E M 
Sbjct: 191 FNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMR 250

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  D  TY  +I    K GR++ A   F  MK      +   F++ VD+  K G + 
Sbjct: 251 RSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVR 310

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +MK++ +M+  G   +   Y  LI+   KAG+LD A+ L DEM   G   N   +T+++
Sbjct: 311 EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLV 370

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K  K+  A  +   ME+AG       Y+ L+  H  +   + A+ L + M + GL 
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
             +S Y AL+  L     +D A  +L +M   G   +      +M    K G V  A+  
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 537 LRFMGSSGIRTN 548
           L+ +  SG + N
Sbjct: 491 LQKILDSGFQPN 502



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 143/326 (43%), Gaps = 36/326 (11%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T+ ++I  L K G L  A  LF  MKE    P    F SL+D  GK G LD   ++  EM
Sbjct: 190 TFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEM 249

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G +     Y +LI  + K G+++TA   +  M+  G   N   F+  +++  K G +
Sbjct: 250 RRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLV 309

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             AM +F  M   G      TY+CL++    +G++D A+ L + M   G+   + TYT L
Sbjct: 310 REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVL 369

Query: 487 LTLLAKRKLV----DV-------------------------------AAKILLEMKTMGY 511
           +  L K + V    DV                               A  +L EMK  G 
Sbjct: 370 VDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL 429

Query: 512 SVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
            +D+S    L+  + +   +D A   L  M  SG+  N  I   + ++C K+     A  
Sbjct: 430 ELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIA 489

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           +L+  ++S  + +++ Y +++  L +
Sbjct: 490 MLQKILDSGFQPNVITYCALIDGLCK 515



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 159/338 (47%), Gaps = 8/338 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L D   ++   D  + L DEMV    + G+ L    Y  ++  L K  K+  +    
Sbjct: 331 YTCLIDGTCKAGRLDDAIVLLDEMV----RQGVPLNVVTYTVLVDGLCKERKVAEAEDVL 386

Query: 259 KKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + +  +  + +   Y  L+   F+NK    KA  +   M+     LD S Y  +I  L  
Sbjct: 387 RMMEKAGVRANELLYTTLIHGHFMNKN-SEKALGLLSEMKNKGLELDISLYGALIQGLCN 445

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
             +LD A  L  +M E    P++ I+ +++D+  K+G++  ++ +  ++   G +P+   
Sbjct: 446 VHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVIT 505

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI+   KAG +D A+  +++MR  G  PN   +T +++   K+G L+ A+ +F +M 
Sbjct: 506 YCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMV 565

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G       Y+ LL+ +   G +  A  L   M  +GL+  L  YT  ++      ++ 
Sbjct: 566 HKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMP 625

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHAL 534
            A ++  EM   G + D +  + L+  Y K G+++ A+
Sbjct: 626 EAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAI 663



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 131/279 (46%), Gaps = 7/279 (2%)

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           +SGRL    +LF+++   N   +FNI   ++D + K G L  +  ++  M+  G  P   
Sbjct: 171 RSGRL--VRRLFEQLPAPNVF-TFNI---VIDFLCKEGELAEARSLFSRMKEMGCLPDVV 224

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            + SLI+ Y K G+LD   +L +EMR +G + +   +  +I    K G+++ A   F  M
Sbjct: 225 TFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAM 284

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +R G +    T+S  ++     G V  AMKL+  M   G+     TYT L+    K   +
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           D A  +L EM   G  ++V    VL+  + K+  V  A   LR M  +G+R N  +   L
Sbjct: 345 DDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTL 404

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                 N   E A  LL        ++D+ LY +++  L
Sbjct: 405 IHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL 443



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 121/262 (46%), Gaps = 3/262 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
           +++ +  L L  EM +   +  ISL+ A   +IQ L    KL+ +     K+ +S  + +
Sbjct: 411 NKNSEKALGLLSEMKNKGLELDISLYGA---LIQGLCNVHKLDEAKSLLTKMDESGLEPN 467

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
              Y  +M      G   +A  + + +       +  TY  +I  L K+G +D AI  F 
Sbjct: 468 YIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFN 527

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           +M++    P+   + +LVD + K G L+ +++++ EM   G      +Y +L++ Y K G
Sbjct: 528 KMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQG 587

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
            L  A  L  +M  +G + +   +T  I        +  A  +F++M   G  P  + Y+
Sbjct: 588 NLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYN 647

Query: 450 CLLEMHASSGQVDSAMKLYNSM 471
           CL+  +   G ++ A+ L + M
Sbjct: 648 CLISKYQKLGNLEEAISLQDEM 669



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 87/201 (43%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++    K+ K+  +    +K+LDS  + +  +Y  L+      G   +A   +  M 
Sbjct: 471 YTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMR 530

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +   Y  ++  L K+G L+ A++LF EM  +       ++ +L+D   K G L 
Sbjct: 531 DLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLH 590

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  +  +M   G +     Y   I  +     +  A  ++ EM   G  P+  ++  +I
Sbjct: 591 DAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 650

Query: 418 ESHAKSGKLDIAMSIFTDMER 438
             + K G L+ A+S+  +MER
Sbjct: 651 SKYQKLGNLEEAISLQDEMER 671



 Score = 43.9 bits (102), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 3/177 (1%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           S + P    Y  L D L ++   D  +S F++M        +    AY  ++  L K   
Sbjct: 497 SGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ---AYTALVDGLCKNGC 553

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           L  +   F +++     +D   Y  L+  +L +G  + AF +   M      LD   Y  
Sbjct: 554 LNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTC 613

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
            I        +  A ++F EM      P   ++  L+    K G L+ ++ +  EM+
Sbjct: 614 FISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEME 670


>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
          Length = 544

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 175/367 (47%), Gaps = 6/367 (1%)

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           SL + Y  +I  LAK     ++     ++ +    I  Q    L+  ++   +P +A ++
Sbjct: 143 SLPALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDL 202

Query: 293 YESMEK-GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +  ME+ G  + D +T   ++ +L+K      A  +F   K   F P   ++ +LV +  
Sbjct: 203 FRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKS-VFTPDVVLYTTLVHAWC 261

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           ++GRLD + +V+ EMQ  G  P+   Y ++I++  +AG++  A  L  +M  +G  PN  
Sbjct: 262 RSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTA 321

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ--VDSAMKLYN 469
            F  I+ +H K+G+ +  + +   M + G  P   TY+ L+E H   GQ  +D+AMK+  
Sbjct: 322 TFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLT 381

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
            M + G  P   T+  +L L+     V+ A K+   M+ +    +V   ++LM ++  + 
Sbjct: 382 RMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEK 441

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLY 587
           S+D  LR  R M + G+  N      L E+ C +     +   L E   E A K    +Y
Sbjct: 442 SMDMVLRIKRDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVY 501

Query: 588 TSVLAHL 594
             VLA L
Sbjct: 502 DMVLALL 508



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 121/295 (41%), Gaps = 8/295 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +S + P    Y  L      S   D    +F EM        +  ++A   VI  + +A 
Sbjct: 243 KSVFTPDVVLYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTA---VIDAMYRAG 299

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           ++  +     +++DS C  +T ++N +M   +  G   +  +++  M +  C  D  TY 
Sbjct: 300 QVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYN 359

Query: 310 LMIPSLAKSGR--LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
            ++ +    G+  LDAA+K+   M  +   P  + F  ++  +   G ++ + K+Y  MQ
Sbjct: 360 FLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQ 419

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
               +P+   Y  L+  +     +D  LR+  +M   G  PN   +  +IE+    G   
Sbjct: 420 ELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEPNVNTYAALIEAFCGRGNWK 479

Query: 428 IAMSIFTDM-ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL--RPG 479
            A     +M E     PT   Y  +L +   +GQ+    +L   M   G   RP 
Sbjct: 480 RAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEELVEMMVDRGFISRPA 534


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/521 (22%), Positives = 218/521 (41%), Gaps = 28/521 (5%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           SW +PG +    +F++L  +R+                   +  F  ++ +   L +   
Sbjct: 39  SWVLPGSD----VFEILWTTRNV-----------------CVPGFGVFDALFSVLVELGM 77

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           LE +  CF ++         +S N  +      G    + + +  M     +    TY +
Sbjct: 78  LEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNI 137

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           MI  + K G +  A  LF++MK+    P    + +L+D  GK G LD S+ ++ EM+  G
Sbjct: 138 MIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMG 197

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P    Y +LI S+ K   +  A   + EM+    +PN   ++ +I++  K G + +A+
Sbjct: 198 CEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAI 257

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
             F DM R G LP   TYS L++ +  +G +  A  L + M    +   + TYT LL  L
Sbjct: 258 KFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGL 317

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNN 549
            +  +++ A ++   M   G + ++ A   L+  +IK  S+D A+     M    I+ + 
Sbjct: 318 CEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDI 377

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609
            +   +       +  E  K ++    ES    + V+YT+++    +  +     +L+  
Sbjct: 378 LLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEE 437

Query: 610 LS--ATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLV 667
           +    T+     F C L  G  +R   V   +  F    D++L+   A Y    L++ L 
Sbjct: 438 MRDLGTEVTVVTF-CALIDGLCKRGL-VQEAIYYFGRMPDHDLQPNVAVY--TALIDGLC 493

Query: 668 LMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLS 708
               I  A+ ++    +  + P  I +   I  +L   N  
Sbjct: 494 KNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQ 534



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 187/434 (43%), Gaps = 5/434 (1%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           D  T+ SLF   K+     P    Y  L D   +    D  + LF+EM     +  +   
Sbjct: 147 DMLTARSLFEQMKKMGL-TPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVI-- 203

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
             YN +I    K   +  ++  F+++ D D K +  SY+ L+     +G+   A + +  
Sbjct: 204 -TYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVD 262

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +     +  TY  +I +  K+G L  A  L  EM + +   +   + +L+D + + G 
Sbjct: 263 MTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGM 322

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           ++ + +++  M   G  P+   Y +LI  + K   +D A+ L++EMR    +P+  L+  
Sbjct: 323 MNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGT 382

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I+       KL+    I T+M+ +G    P  Y+ L++ +  +G    A+ L   M   G
Sbjct: 383 IVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLG 442

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHAL 534
               + T+ AL+  L KR LV  A      M       +V+    L+  + K+  +  A 
Sbjct: 443 TEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAK 502

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           +    M    +  +      + +  +K+  ++ A  +    +E   ++DL  YTS++  L
Sbjct: 503 KLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGL 562

Query: 595 VRCQDEQNERHLMA 608
            +C   Q  R  +A
Sbjct: 563 SQCGQVQQARKFLA 576



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 163/360 (45%), Gaps = 8/360 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAKADKLEMSYCC 257
           Y  L D L +    +GM+ +  +   D ++ G+  + F+ Y+ +I    KA  L  ++  
Sbjct: 240 YSTLIDALCK----EGMMQMAIKFFVDMTRVGLLPNEFT-YSSLIDANCKAGNLGEAFML 294

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
             ++L     ++  +Y  L+     +G+  +A E++ +M K   + +   Y  +I    K
Sbjct: 295 ADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIK 354

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
              +D A++LF EM+E++ +P   ++ ++V  +    +L+    +  EM+  G   +  +
Sbjct: 355 VRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVI 414

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +L+++Y KAG    A+ L +EMR  G       F  +I+   K G +  A+  F  M 
Sbjct: 415 YTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMP 474

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
                P  + Y+ L++    +  +  A KL++ M    + P    YTA++    K     
Sbjct: 475 DHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQ 534

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  +  +M  MG  +D+ A   L+  +   G V  A ++L  M   GI  +  +  +L 
Sbjct: 535 EALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLL 594



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 127/301 (42%), Gaps = 4/301 (1%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
            LFR A  ++   P  + Y  L     + R  D  + LF+EM     K  I L   +  +
Sbjct: 328 ELFR-AMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILL---WGTI 383

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           +  L    KLE       ++ +S    +   Y  LM  +   G   +A  + E M     
Sbjct: 384 VWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGT 443

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
            +   T+  +I  L K G +  AI  F  M + + +P+  ++ +L+D + K   +  + K
Sbjct: 444 EVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKK 503

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           ++ EMQ     P    Y ++I+   K G    AL + ++M   G   +   +T ++   +
Sbjct: 504 LFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLS 563

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           + G++  A     +M   G +P  +  + LL  H   G +D A++L N +   GL  G S
Sbjct: 564 QCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLIHGNS 623

Query: 482 T 482
            
Sbjct: 624 N 624


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 187/408 (45%), Gaps = 11/408 (2%)

Query: 172 KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           K +N  D   +  R   +++  VP +E + +L +    +  F+    LF +M     K G
Sbjct: 116 KSLNIEDAEKTFNR--MQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQM----QKRG 169

Query: 232 ISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
            S    A N  +  L  A +   +   F+ +   +C+ +  +YN ++ ++   G P KA 
Sbjct: 170 YSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAE 229

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            +Y SM +  C  +  T+  ++ + A+ G    A + F +++E +++P    + +L+++ 
Sbjct: 230 MLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAY 289

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            + G    +++++  MQ  G  P    +  LI +Y +AG  + A +++  M+ AGF PN 
Sbjct: 290 SQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNL 349

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
               +++ ++A++G+++ A  + + MER G  P    Y+ L+  +  SG+ +    L   
Sbjct: 350 KSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAK 409

Query: 471 M---TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIK 526
           M   +S   +P + TY  L+ + A+   +  A ++   +  +    D +    LM  Y K
Sbjct: 410 MVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYAK 469

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
                     L+ M  SG R +    R LF +C      E    L+E+
Sbjct: 470 KKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVEQVTQLMES 517



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 139/327 (42%), Gaps = 39/327 (11%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D   Y L+I +  KS  ++ A K F  M+E    P+   F  L++    AG  + + +++
Sbjct: 103 DLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEELF 162

Query: 364 MEMQGCGH-----------------------------------RPSAPMYVSLIESYAKA 388
           ++MQ  G+                                    P+   Y  +I  Y KA
Sbjct: 163 VQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKA 222

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+   A  L+  MR A   PN   FT ++ + A+ G    A   F  ++   + P    Y
Sbjct: 223 GEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAY 282

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+E ++  G    A++++ +M   G  P   ++  L+    +  L + A KI   M++
Sbjct: 283 NALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQS 342

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G+S ++ ++ +L+  Y + G V+ A   +  M   G + +  I   L  +   +  +E 
Sbjct: 343 AGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHED 402

Query: 568 AKPLLETYVESAAKV---DLVLYTSVL 591
            + LL   V+S++K    D+  Y +++
Sbjct: 403 MEALLAKMVKSSSKQTKPDIGTYNTLI 429



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 109/240 (45%), Gaps = 1/240 (0%)

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
           FRP    +  L+D+ GK+  ++ + K +  MQ     P+   +  LI  Y  AG  + A 
Sbjct: 100 FRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAE 159

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            L+ +M+  G+ P        +     + +   A ++F D+E+    P   TY+ ++ ++
Sbjct: 160 ELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIY 219

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             +G+   A  LY SM  A   P + T+TAL+   A++ L   A +   +++   Y  D 
Sbjct: 220 GKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDH 279

Query: 516 SASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
            A + LM  Y + GS   AL   + M  +G   +      L  +  +  LYE A+ + ++
Sbjct: 280 YAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKS 339



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 111/238 (46%), Gaps = 3/238 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AYN +++  ++      +   F+ +  + C  DT S+N+L+  +   GL   A +I++SM
Sbjct: 281 AYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSM 340

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +    S +  +  L++ + A++GR++ A +L   M+    +P   I+ SL+++ G +GR 
Sbjct: 341 QSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRH 400

Query: 357 DTSMKVYMEMQGCGHRPSAP---MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           +    +  +M     + + P    Y +LI+ YA+AG +  A  L+  +      P+   +
Sbjct: 401 EDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTW 460

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           T ++  +AK        SI   M  +G      T   L     S  QV+   +L  S+
Sbjct: 461 TALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVEQVTQLMESL 518


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 182/412 (44%), Gaps = 5/412 (1%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           SLF   K     +P    +  L D   +  + D +  L +EM     K  +     YN +
Sbjct: 209 SLFSRMKEMGC-LPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVV---TYNAL 264

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           I    K  ++E +Y  F  +       +  +++  +  F  +GL  +A +++  M     
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           +L+  TY  +I    K+GRLD AI L  EM  +    +   +  LVD + K  ++  +  
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAED 384

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           V   M+  G R +  +Y +LI  +      + AL L  EM+  G   +  L+  +I+   
Sbjct: 385 VLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLC 444

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
              KLD A S+ T M+ +G  P    Y+ +++    SG+V  A+ +   +  +G +P + 
Sbjct: 445 NVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVI 504

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFM 540
           TY AL+  L K   +D A     +M+ +G   +V A   L+  + K+G ++ A++    M
Sbjct: 505 TYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM 564

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
              G+  +  +   L +  +K      A  L    ++S  ++DL  YT  ++
Sbjct: 565 VHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFIS 616



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 162/390 (41%), Gaps = 36/390 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N VI +L K  +L  +   F ++ +  C  D  ++N L+  +   G   +  ++ E M 
Sbjct: 191 FNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMR 250

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  D  TY  +I    K GR++ A   F  MK      +   F++ VD+  K G + 
Sbjct: 251 RSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVR 310

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +MK++ +M+  G   +   Y  LI+   KAG+LD A+ L DEM   G   N   +T+++
Sbjct: 311 EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLV 370

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K  K+  A  +   ME+AG       Y+ L+  H  +   + A+ L + M + GL 
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG----YSVDVSASDV------------- 520
             +S Y AL+  L     +D A  +L +M   G    Y +  +  D              
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 521 ------------LMVY-------IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
                       ++ Y        K GS+D A+     M   G+  N      L +   K
Sbjct: 491 LQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCK 550

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVL 591
           N     A  L    V     +D V+YT++L
Sbjct: 551 NGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 143/326 (43%), Gaps = 36/326 (11%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T+ ++I  L K G L  A  LF  MKE    P    F SL+D  GK G LD   ++  EM
Sbjct: 190 TFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEM 249

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G +     Y +LI  + K G+++TA   +  M+  G   N   F+  +++  K G +
Sbjct: 250 RRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLV 309

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             AM +F  M   G      TY+CL++    +G++D A+ L + M   G+   + TYT L
Sbjct: 310 REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVL 369

Query: 487 LTLLAKRKLV----DV-------------------------------AAKILLEMKTMGY 511
           +  L K + V    DV                               A  +L EMK  G 
Sbjct: 370 VDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL 429

Query: 512 SVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
            +D+S    L+  + +   +D A   L  M  SG+  N  I   + ++C K+     A  
Sbjct: 430 ELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIA 489

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           +L+  ++S  + +++ Y +++  L +
Sbjct: 490 MLQKILDSGFQPNVITYCALIDGLCK 515



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 159/338 (47%), Gaps = 8/338 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L D   ++   D  + L DEMV    + G+ L    Y  ++  L K  K+  +    
Sbjct: 331 YTCLIDGTCKAGRLDDAIVLLDEMV----RQGVPLNVVTYTVLVDGLCKERKVAEAEDVL 386

Query: 259 KKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + +  +  + +   Y  L+   F+NK    KA  +   M+     LD S Y  +I  L  
Sbjct: 387 RMMEKAGVRANELLYTTLIHGHFMNKN-SEKALGLLSEMKNKGLELDISLYGALIQGLCN 445

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
             +LD A  L  +M E    P++ I+ +++D+  K+G++  ++ +  ++   G +P+   
Sbjct: 446 VHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVIT 505

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI+   KAG +D A+  +++MR  G  PN   +T +++   K+G L+ A+ +F +M 
Sbjct: 506 YCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMV 565

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G       Y+ LL+ +   G +  A  L   M  +GL+  L  YT  ++      ++ 
Sbjct: 566 HKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMP 625

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHAL 534
            A ++  EM   G + D +  + L+  Y K G+++ A+
Sbjct: 626 EAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAI 663



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 131/279 (46%), Gaps = 7/279 (2%)

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           +SGRL    +LF+++   N   +FNI   ++D + K G L  +  ++  M+  G  P   
Sbjct: 171 RSGRL--VRRLFEQLPAPNVF-TFNI---VIDFLCKEGELAEARSLFSRMKEMGCLPDVV 224

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            + SLI+ Y K G+LD   +L +EMR +G + +   +  +I    K G+++ A   F  M
Sbjct: 225 TFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAM 284

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +R G +    T+S  ++     G V  AMKL+  M   G+     TYT L+    K   +
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           D A  +L EM   G  ++V    VL+  + K+  V  A   LR M  +G+R N  +   L
Sbjct: 345 DDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTL 404

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                 N   E A  LL        ++D+ LY +++  L
Sbjct: 405 IHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL 443



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 3/255 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L L  EM +   +  ISL+ A   +IQ L    KL+ +     K+ +S  + +   Y  +
Sbjct: 418 LGLLSEMKNKGLELDISLYGA---LIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTM 474

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M      G   +A  + + +       +  TY  +I  L K+G +D AI  F +M++   
Sbjct: 475 MDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGL 534

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   + +LVD + K G L+ +++++ EM   G      +Y +L++ Y K G L  A  
Sbjct: 535 DPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFA 594

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +M  +G + +   +T  I        +  A  +F++M   G  P  + Y+CL+  + 
Sbjct: 595 LKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQ 654

Query: 457 SSGQVDSAMKLYNSM 471
             G ++ A+ L + M
Sbjct: 655 KLGNLEEAISLQDEM 669



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 2/207 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++    K+ K+  +    +K+LDS  + +  +Y  L+      G   +A   +  M 
Sbjct: 471 YTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMR 530

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +   Y  ++  L K+G L+ A++LF EM  +       ++ +L+D   K G L 
Sbjct: 531 DLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLH 590

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  +  +M   G +     Y   I  +     +  A  ++ EM   G  P+  ++  +I
Sbjct: 591 DAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 650

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPT 444
             + K G L+ A+S+  +MER   LP+
Sbjct: 651 SKYQKLGNLEEAISLQDEMERV--LPS 675



 Score = 43.5 bits (101), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 3/177 (1%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           S + P    Y  L D L ++   D  +S F++M        +    AY  ++  L K   
Sbjct: 497 SGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ---AYTALVDGLCKNGC 553

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           L  +   F +++     +D   Y  L+  +L +G  + AF +   M      LD   Y  
Sbjct: 554 LNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTC 613

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
            I        +  A ++F EM      P   ++  L+    K G L+ ++ +  EM+
Sbjct: 614 FISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEME 670


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 199/455 (43%), Gaps = 27/455 (5%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           PE+ T    L  + K  H   A+++ ND      +     R   Y+     Y  +   L 
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFND------MVSVGIRPDVYI-----YTGVIRSLC 238

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK 267
           E +D    LS   EM+      G  +    YN +I  L K  K+  +    K +   D K
Sbjct: 239 ELKD----LSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLK 294

Query: 268 IDTQSYNVLMTLFLNKGL-PYKAFEI-YESMEKGEC---SLDGSTYELMIPSLAKSGRLD 322
            D  +Y  L+      GL   + FEI  E M++  C   S   +    ++  L K G+++
Sbjct: 295 PDVVTYCTLVY-----GLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIE 349

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A+ L + + +    P+  ++ +L+DS+ K  +   +  ++  M   G RP+   Y  LI
Sbjct: 350 EALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILI 409

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           + + + GKLDTAL    EM   G + +   +  +I  H K G +  A     +M      
Sbjct: 410 DMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLE 469

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           PT  TY+ L+  + S G+++ A++LY+ MT  G+ P + T+T LL+ L +  L+  A K+
Sbjct: 470 PTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKL 529

Query: 503 LLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             EM       +    +V++  Y ++G +  A  +L+ M   GI  + +  R L      
Sbjct: 530 FNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCL 589

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                 AK  ++   +   +++ + YT +L    R
Sbjct: 590 TGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCR 624



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 154/365 (42%), Gaps = 9/365 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L K  K   +   F ++     + +  +Y++L+ +F  +G    A      M
Sbjct: 369 VYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEM 428

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                 L    Y  +I    K G + AA     EM  +   P+   + SL+      G++
Sbjct: 429 VDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKI 488

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + ++++Y EM G G  PS   + +L+    +AG +  A++L++EM     +PN   + ++
Sbjct: 489 NKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVM 548

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           IE + + G +  A     +M   G +P   +Y  L+     +GQ   A    + +     
Sbjct: 549 IEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNC 608

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
                 YT LL    +   ++ A  +  EM   G  +D+    VL+    DGS+ H  R 
Sbjct: 609 ELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLI----DGSLKHKDRK 664

Query: 537 LRF-----MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           L F     M   G++ ++ I   + ++  K   ++ A  + +  +      + V YT+V+
Sbjct: 665 LFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724

Query: 592 AHLVR 596
             L +
Sbjct: 725 NGLCK 729



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 156/347 (44%), Gaps = 10/347 (2%)

Query: 217 LSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           + LF+EM   + K N ++    YN +I+   +   +  ++   K++ +     DT SY  
Sbjct: 527 VKLFNEMAEWNVKPNRVT----YNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRP 582

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+      G   +A    + + KG C L+   Y  ++    + G+L+ A+ + QEM +R 
Sbjct: 583 LIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRG 642

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
                  +  L+D   K         +  EM   G +P   +Y S+I++ +K G    A 
Sbjct: 643 VDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAF 702

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            +WD M   G  PN   +T +I    K+G ++ A  + + M+    +P   TY C L++ 
Sbjct: 703 GIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDI- 761

Query: 456 ASSGQVD--SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            + G+VD   A++L+N++   GL    +TY  L+    ++  ++ A++++  M   G S 
Sbjct: 762 LTKGEVDMQKAVELHNAILK-GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSP 820

Query: 514 D-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           D ++ + ++    +   V  A+     M   GIR +      L   C
Sbjct: 821 DCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGC 867



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS-KNGISLFSAYNRVIQYLAKADKLEM 253
           P D  Y  + D  +++ DF     ++D M+++    N ++    Y  VI  L KA  +  
Sbjct: 680 PDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVT----YTAVINGLCKAGFVNE 735

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP--YKAFEIYESMEKGECSLDGSTYELM 311
           +     K+       +  +Y   + + L KG     KA E++ ++ KG  + + +TY ++
Sbjct: 736 AEVLCSKMQPVSSVPNQVTYGCFLDI-LTKGEVDMQKAVELHNAILKGLLA-NTATYNML 793

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I    + GR++ A +L   M      P    + ++++ + +   +  +++++  M   G 
Sbjct: 794 IRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGI 853

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           RP    Y +LI     AG++  A  L +EM   G  PN
Sbjct: 854 RPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 106/285 (37%), Gaps = 40/285 (14%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCC 257
           CY  L          +  LS+  EMV    + G+ L    Y  +I    K    ++ +  
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQEMV----QRGVDLDLVCYGVLIDGSLKHKDRKLFFGL 669

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
            K++ D   K D   Y  ++      G   +AF I++ M    C  +  TY  +I  L K
Sbjct: 670 LKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCK 729

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA------------------------ 353
           +G ++ A  L  +M+  +  P+   +   +D + K                         
Sbjct: 730 AGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTAT 789

Query: 354 -----------GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
                      GR++ + ++   M G G  P    Y ++I    +   +  A+ LW+ M 
Sbjct: 790 YNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMT 849

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
             G RP+   +  +I     +G++  A  +  +M R G +P   T
Sbjct: 850 EKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894



 Score = 47.8 bits (112), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)

Query: 413 FTMIIESHAKSGKLDIAMSIFTDM-ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           F ++I+ + +S ++   + +F  M  +   LP   T S LL           AM+L+N M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            S G+RP +  YT ++  L + K +  A +++  M+  G  V++   +VL+
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLI 269


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 156/380 (41%), Gaps = 37/380 (9%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + LFDEMV    +  +     Y+ +I  L K     M+    KK+ +  CK +  +YN +
Sbjct: 30  VKLFDEMVKMGHEPDVI---TYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTI 86

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +       L  +A + +  M K     D  TY  ++      GR++ A  LF++M ERN 
Sbjct: 87  IDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNV 146

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   F  L+D + K   +  +  V+  M   G  P    Y +L++ Y    ++D A +
Sbjct: 147 IPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQK 206

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L++ M   G  PN   + ++I  H KSG++D A  +  +M      P   TYS L+    
Sbjct: 207 LFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFC 266

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G+   A +L   M S GL P L TY+ +L  L K                        
Sbjct: 267 QVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKH----------------------- 303

Query: 517 ASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
                      G +D A   L+ M  S I  N FI   L E        E+A+ L     
Sbjct: 304 -----------GHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLF 352

Query: 577 ESAAKVDLVLYTSVLAHLVR 596
               +  +V YT +++ L++
Sbjct: 353 VKGIQPTVVTYTVMISGLLK 372



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 155/340 (45%), Gaps = 1/340 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++N L++   +K     A ++++ M K     D  TY  +I  L K G    A++L ++M
Sbjct: 12  TFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKM 71

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           +E+  +P+   + +++DS+ K   +  +M  + EM   G  P    Y S++  +   G++
Sbjct: 72  EEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRV 131

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A  L+ +M      PN   FT++I+   K   +  A  +F  M   G  P   TY+ L
Sbjct: 132 NEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNAL 191

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++ + S  Q+D A KL+N M   G  P + +Y  L+    K   +D A  +L EM     
Sbjct: 192 VDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSL 251

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           + D+     LM  + + G    A   L+ M S G+  N      + +   K+   + A  
Sbjct: 252 TPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFE 311

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
           LL+   ES  + ++ +YT ++  +      +  R L + L
Sbjct: 312 LLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNL 351



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 1/273 (0%)

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
            +P+   F +L+  +    ++  ++K++ EM   GH P    Y ++I    K G    AL
Sbjct: 6   LQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMAL 65

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           +L  +M   G +PN   +  II+S  K   +  AM  F++M + G  P   TYS +L   
Sbjct: 66  QLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGF 125

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
            + G+V+ A  L+  M    + P   T+T L+  L K++++  A  +   M   G   DV
Sbjct: 126 CNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDV 185

Query: 516 SASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
              + L+  Y     +D A +    M   G   N      L     K+   + AK LL  
Sbjct: 186 YTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAE 245

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
               +   D+  Y++++    +    Q  + L+
Sbjct: 246 MSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELL 278


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 166/359 (46%), Gaps = 12/359 (3%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG-RLDAAIKLFQEM 331
           YN L+T   N        E+Y ++   E   D  T+ +++ S  K G  L     L+Q+M
Sbjct: 108 YNTLITCLTN--CNRYDLELYHNLAFYEVFPDSVTFSVLMNSAVKGGGSLKEVWALYQDM 165

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            +R   PS ++F + + +   AGRL  ++ +  EM+      +  +Y  LI++Y + G+L
Sbjct: 166 VQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQL 225

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG---KLDIAMSIFTDMERAGFLPTPSTY 448
           + A  L  EMR  G +PN G +  +I  + ++    +  +A  +  +ME +G  P   T+
Sbjct: 226 EEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTF 285

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + LL  +   G  + A +++N M + G++P   +YTAL+   A+R+  + AA+    ++ 
Sbjct: 286 TMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRK 345

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G +  V     L+  Y + G ++      + M   G          + ++  K   Y+ 
Sbjct: 346 QGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRYKE 405

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFT 626
           A+ L+E +     K DL++Y  +L   +R       RH+ A     + K   FL   FT
Sbjct: 406 ARDLIEEFKNQGHKPDLMVYNMLLNSYMR-----GGRHVKASDILLEMKTAGFLPDSFT 459



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 143/294 (48%), Gaps = 4/294 (1%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQ-YLAKADKLE--MSYC 256
           V+++++L ++    G L   + ++ +  + GI      YN +I  YL    K +  ++  
Sbjct: 209 VVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEG 268

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
             +++  S    D  ++ +L+  + ++GL  +A +++  M+      +  +Y  +I + A
Sbjct: 269 LIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYA 328

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           +    + A + F+ ++++   P+   + +L+D+  +AG L+    V+  M+  G   +  
Sbjct: 329 ERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRV 388

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y+++++++ K G+   A  L +E +  G +P+  ++ M++ S+ + G+   A  I  +M
Sbjct: 389 TYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEM 448

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           + AGFLP   TY  L+           A+K +  M + G  P   TY  L  +L
Sbjct: 449 KTAGFLPDSFTYCTLIYGFLRVRDQTKALKYHREMMNRGQLPDPKTYAKLRAIL 502


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 173/353 (49%), Gaps = 2/353 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I  L +  ++E++   F+  L+        +++ L++ +   G   +A +++E+M+   
Sbjct: 191 MISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSG 250

Query: 301 CSLDGSTYELMIPSLAKSG-RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
              +  TY  +I +  K G   + A ++F EM     +P    F SL+   G+ G  + +
Sbjct: 251 LKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAA 310

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             ++ EM   G       Y +L+++  K G++D A ++  EM      PN   ++ +I+ 
Sbjct: 311 RNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDG 370

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           +AK+G+LD A+++F +M+ A       +Y+ LL ++A  G+ + A+ +   M S+G++  
Sbjct: 371 YAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKD 430

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHALRWLR 538
             TY ALL    K+   +   ++  EMK    +   ++ S ++ VY K G    A+   R
Sbjct: 431 AVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFR 490

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               +G++ +  +   L ++  KN L ESA   L+   +   + ++V Y S++
Sbjct: 491 EFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSII 543



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 133/596 (22%), Positives = 249/596 (41%), Gaps = 71/596 (11%)

Query: 238 YNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           YN VI    K       +   F ++L +  + D  ++N L+ +    GL   A  ++  M
Sbjct: 258 YNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEM 317

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  ++ ++ K G++D A ++  EM  ++  P+   +++++D   KAGRL
Sbjct: 318 LYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRL 377

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ ++ EM+          Y +L+  YAK G+ + AL +  EM  +G + +   +  +
Sbjct: 378 DEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNAL 437

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  + K GK +    +F +M+     P   TYS L+++++  G    AM+++     AGL
Sbjct: 438 LGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGL 497

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHAL- 534
           +  +  Y+AL+  L K  LV+ A   L EM   G   + V+ + ++  + + GS +  + 
Sbjct: 498 KADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVID 557

Query: 535 ----RWLRFMGSS-------------GIRTNNFIVR---QLF--ESCMKNALYESAKPLL 572
                 +  M SS             G + +N I++   QL   ++C         + +L
Sbjct: 558 PPYETNVSKMSSSSLKVVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEIL 617

Query: 573 ------ETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFT 626
                     E   K ++V ++++L    RC   ++   L+  L    ++ +    GL  
Sbjct: 618 CILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLM 677

Query: 627 GPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRA---------RC 677
           G       V    +  F  +  +++   A  F N L + L   GQ   A         R 
Sbjct: 678 G---YGDNVWVQAQSLFDEVK-QMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEGKRRH 733

Query: 678 VWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRI 737
           VW+  + N                LD+  +S GAA   V   L   R  +     +P+ +
Sbjct: 734 VWENMWSNSC--------------LDLHLMSSGAARAMVHAWLLNIRSIVFEGHELPQLL 779

Query: 738 KLVTG----------PTLKIVIAQMLSSVESPFEVSKVVLR---APGDSVMEWFKK 780
            ++TG            L+  I  +L+ + +PF V+K  L    + G  V  W ++
Sbjct: 780 SILTGWGKHSKVVGDGALRRAIEALLTGMGAPFRVAKCNLGRFISTGAVVAAWLRE 835



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 146/292 (50%), Gaps = 2/292 (0%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG-RLDTSMKVYME 365
            +  +I +  +SG  D AIK+F+ MK    +P+   + +++D+ GK G   + + +++ E
Sbjct: 222 AFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDE 281

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G +P    + SL+    + G  + A  L+ EM   G   +   +  ++++  K G+
Sbjct: 282 MLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQ 341

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           +D+A  I ++M R   +P   TYS +++ +A +G++D A+ L+N M  A +     +Y  
Sbjct: 342 MDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNT 401

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
           LL++ AK    + A  +  EM++ G   D V+ + +L  Y K G  +   R    M +  
Sbjct: 402 LLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAER 461

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           I  N      L +   K  LY+ A  +   + ++  K D+VLY++++  L +
Sbjct: 462 IFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCK 513



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 140/299 (46%), Gaps = 7/299 (2%)

Query: 300 ECSLDGST-YELMIPSLAKSGRLDAAIKLFQEMKERNFR--PSFNIFASLVDSMGKAGRL 356
           E  L GS  Y  ++  L   G    AI+ F+    R  R      + ++++  +G+ G++
Sbjct: 142 ESRLCGSDDYTFLLRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLASAMISILGRLGQV 201

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +  V+      G+  +   + +LI +Y ++G  D A+++++ M+ +G +PN   +  +
Sbjct: 202 ELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAV 261

Query: 417 IESHAKSG-KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I++  K G   + A  IF +M R G  P   T++ LL +    G  ++A  L++ M   G
Sbjct: 262 IDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRG 321

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEM--KTMGYSVDVSASDVLMVYIKDGSVDHA 533
           +   + TY  LL  + K   +D+A +I+ EM  K +  +V V+ S V+  Y K G +D A
Sbjct: 322 IEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNV-VTYSTVIDGYAKAGRLDEA 380

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           L     M  + I  +      L     K   +E A  + +    S  K D V Y ++L 
Sbjct: 381 LNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLG 439



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 38/237 (16%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y  + D   ++   D  L+LF+EM   S   G+   S YN ++   AK  + E 
Sbjct: 358 MPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASI--GLDRVS-YNTLLSIYAKLGRFEE 414

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +    K++  S  K D  +YN L+  +                                 
Sbjct: 415 ALNVCKEMESSGIKKDAVTYNALLGGY--------------------------------- 441

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              K G+ +   ++F+EMK     P+   +++L+D   K G    +M+V+ E +  G + 
Sbjct: 442 --GKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKA 499

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
              +Y +LI++  K G +++A+   DEM   G RPN   +  II++  +SG  +  +
Sbjct: 500 DVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVI 556


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 183/414 (44%), Gaps = 11/414 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV---IQYLA 246
           +S   P    +  L      +R  D  L L       +S   I L    N V   I  L 
Sbjct: 214 ESRLEPDAPLFSDLISAFARARLPDAALELL------ASAQAIGLTPRSNAVTALISSLG 267

Query: 247 KADKLEMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
            A ++  +   F +  L  + K  T++YN L+  ++  G    A ++ + M +   + D 
Sbjct: 268 SARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDE 327

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           +TY L++ +  ++GR ++A  L +EM+    +PS  +F+ ++      G    +  V  E
Sbjct: 328 ATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLRE 387

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G RP    Y  +I+++ K   L  A+  +D MR  G  P+   +  +I++H K G+
Sbjct: 388 MHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 447

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
            D A+ +F +M  +      +TY+ ++ +     + +    +   M   GL P + TYT 
Sbjct: 448 HDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTT 507

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG 544
           L+ +  +      A   +  MK  G     +    L+  Y + G  DHAL  ++ M + G
Sbjct: 508 LVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADG 567

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
           +  +  ++  L  +  ++     A  +L+   E+  + D++ YT+++  L+R +
Sbjct: 568 LEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVE 621



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 154/351 (43%), Gaps = 12/351 (3%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q    P +  Y +L D    +  ++    L  EM  D  K    +FS   R++       
Sbjct: 320 QCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFS---RILAGFRDRG 376

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           + + ++   +++  S  + D   YNV++  F        A + ++ M +     D  T+ 
Sbjct: 377 EWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWN 436

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I +  K GR D AI+LF EM+E N       +  +++ +G+  R +    +  EM+  
Sbjct: 437 TLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQ 496

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   Y +L++ Y ++G+   A+   + M+  G +P+  ++  ++ ++A+ G  D A
Sbjct: 497 GLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHA 556

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           +++   M   G   +    + L+       ++  A  +   M   GLRP + TYT L+  
Sbjct: 557 LNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKA 616

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
           L + +  +    I  EM T G + D  A  +L           ALR+++ M
Sbjct: 617 LIRVEQFEKVPVIYEEMITSGCAPDRKARAMLR---------SALRYMKHM 658



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 120/262 (45%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    K + L  +   F ++ +   + D  ++N L+      G   +A E+++ M 
Sbjct: 400 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMR 459

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C L  +TY +MI  L +  R +    +  EMKE+   P+   + +LVD  G++GR  
Sbjct: 460 ESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFK 519

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++     M+  G +PS  MY +L+ +YA+ G  D AL +   MR  G   +  +   +I
Sbjct: 520 EAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLI 579

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  +  ++  A S+   M+  G  P   TY+ L++      Q +    +Y  M ++G  
Sbjct: 580 NAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCA 639

Query: 478 PGLSTYTALLTLLAKRKLVDVA 499
           P       L + L   K + VA
Sbjct: 640 PDRKARAMLRSALRYMKHMRVA 661



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 146/332 (43%), Gaps = 13/332 (3%)

Query: 269 DTQSYNVLMTLFLN-KGLPYKAFEIYESMEKGECSL--DGSTYELMIPSLAKSGRLDAAI 325
           D  SY+ L+ L LN +  P  A       +  E  L  D   +  +I + A++   DAA+
Sbjct: 182 DLASYSHLLALLLNTRDPPEAALLDRLLGDLRESRLEPDAPLFSDLISAFARARLPDAAL 241

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIES 384
           +L    +     P  N   +L+ S+G A R+  +  +++E    G  +P    Y +L++ 
Sbjct: 242 ELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKG 301

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           Y K G L  A ++ DEM   G  P+   ++++++++ ++G+ + A  +  +ME  G  P+
Sbjct: 302 YVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPS 361

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
              +S +L      G+   A  +   M ++G+RP    Y  ++    K   +  A     
Sbjct: 362 SYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFD 421

Query: 505 EMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS----GIRTNNFIVRQLFESC 559
            M+  G   DV   + L+  + K G  D A+     M  S    G  T N ++  L E  
Sbjct: 422 RMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGE-- 479

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                +E  + +L    E     +++ YT+++
Sbjct: 480 --EQRWEGVEAMLAEMKEQGLVPNIITYTTLV 509



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 6/235 (2%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P AP++  LI ++A+A   D AL L    +  G  P     T +I S   + ++  A ++
Sbjct: 219 PDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEAL 278

Query: 433 FTDMERAGFL-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           F +   AG + P    Y+ LL+ +   G + +A ++ + M+  G+ P  +TY+ L+    
Sbjct: 279 FLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYT 338

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNF 550
           +    + A  +L EM+  G          ++   +D G    A   LR M +SG+R +  
Sbjct: 339 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRH 398

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQNER 604
               + ++  K      A    +   E   + D+V + +++ AH   C+  +++R
Sbjct: 399 FYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAH---CKGGRHDR 450



 Score = 40.0 bits (92), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 19/210 (9%)

Query: 395 LRLWDEMRIAGFRPNFG----LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           LRL   +R   F P+      L  +++ +        +   +    E +   P    +S 
Sbjct: 168 LRLLGLLREHSFLPDLASYSHLLALLLNTRDPPEAALLDRLLGDLRE-SRLEPDAPLFSD 226

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM---- 506
           L+   A +   D+A++L  S  + GL P  +  TAL++ L   + V  A  + LE     
Sbjct: 227 LISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAG 286

Query: 507 ----KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
               +T  Y+       +L  Y+K GS+ +A + L  M   G+  +      L ++  + 
Sbjct: 287 EIKPRTRAYNA------LLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRA 340

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLA 592
             +ESA+ LL+       K    +++ +LA
Sbjct: 341 GRWESARILLKEMEADGVKPSSYVFSRILA 370


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 166/357 (46%), Gaps = 5/357 (1%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFD-VLNESRDFDGMLSLFDEMVH 225
           + ++   +N  + +LS+   AK    ++PG   Y  + D V+   +       +F EMV 
Sbjct: 138 VVKSCARVNLINKALSIVNLAKSYG-FMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVE 196

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
                 +     YN +I+    A  LEM    F ++  + C  +  +YN ++  +     
Sbjct: 197 SGVSPNVY---TYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +AF++   M     + +  +Y ++I  L + G++    ++ +EM +R + P    F +
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNT 313

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L++     G    ++ ++ EM   G  P+   Y +LI S  KAG L+ A+   D+MR  G
Sbjct: 314 LINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRG 373

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             PN   +T +I+  ++ G L  A  I  +M   GF PT  TY+ L+  H   G+++ A 
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            L   M   G  P + +Y+ +++   + + ++ A ++ +EM   G S DV+    L+
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 172/398 (43%), Gaps = 23/398 (5%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFS 236
           +TS  L   +KR+  YVP    +  L +      +F   L L  EMV    KNG+S    
Sbjct: 291 ETSEILEEMSKRR--YVPDRVTFNTLINGYCNVGNFHQALVLHAEMV----KNGLSPNVV 344

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  + KA  L  +     ++ D     + ++Y  L+  F  +G   +A++I + M
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   +    TY  +I      GR++ A  L QEM ER F P    +++++    +   L
Sbjct: 405 VENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQEL 464

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + ++ +EM   G  P    Y SLI+   K  +L     L+ EM   G  P+   +T +
Sbjct: 465 EKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSL 524

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL--------- 467
           I ++   G LD A+ +  +M + GF P   TY+ L+       +   A +L         
Sbjct: 525 INAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEES 584

Query: 468 ------YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
                 YN++          +  AL+     + L++ A ++L  M   GY ++    +V+
Sbjct: 585 VPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVI 644

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
           +  + K G+++ A    + M  SG   ++  +  L +S
Sbjct: 645 IHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKS 682



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 140/337 (41%), Gaps = 37/337 (10%)

Query: 300 ECSLDGSTYELMIPSLAK--------------------------SGRLDAAIK------- 326
           +C    + ++L++ S A+                          +  LDA I+       
Sbjct: 127 QCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKI 186

Query: 327 ---LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
              +F+EM E    P+   +  L+     AG L+  +  + EM+  G  P+   Y ++I+
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIID 246

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           +Y K  K+  A +L   M + G  PN   + ++I    + G++     I  +M +  ++P
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP 306

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              T++ L+  + + G    A+ L+  M   GL P + TYT L+  + K   ++ A + L
Sbjct: 307 DRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFL 366

Query: 504 LEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            +M+  G   +      L+  + + G +  A + ++ M  +G          L       
Sbjct: 367 DQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCIL 426

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              E A  LL+  +E     D+V Y+++++   R Q+
Sbjct: 427 GRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQE 463



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 119/308 (38%), Gaps = 55/308 (17%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKA 248
           +  ++P    Y  +      +++ +    L  EMV      GIS   + Y+ +IQ L K 
Sbjct: 441 ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMV----AKGISPDVATYSSLIQGLCKQ 496

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            +L      F+++L      D  +Y  L+  +  +G   KA  +++ M +   S D  TY
Sbjct: 497 RRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTY 556

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK---------------A 353
            ++I    K  R   A +L  ++      P+   + +L+D+                   
Sbjct: 557 NVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMK 616

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN---- 409
           G ++ + +V   M   G++ +  +Y  +I  ++K G ++ A  L+ EM  +GF P+    
Sbjct: 617 GLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTI 676

Query: 410 -------------------------------FGLFTMIIESHAKSGKLDIAMSIFTDMER 438
                                            L  ++I  ++K G +D   ++  DM  
Sbjct: 677 MALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMAL 736

Query: 439 AGFLPTPS 446
           +G LP  S
Sbjct: 737 SGLLPYSS 744


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 202/469 (43%), Gaps = 65/469 (13%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           D  TS+++F+WA  Q  Y    + Y +L D L  +++F     + D+++    + GI+  
Sbjct: 81  DVSTSMAIFQWAGSQKGYCHTFDVYHVLIDKLGAAKEF----KVIDKLLLQIKEEGIAFR 136

Query: 236 -SAYNRVIQYLAKAD----------KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
            S +  +++Y  +A+           ++  YC         C+   +SYNV++ + ++  
Sbjct: 137 ESLFICIMKYYGRANLPGQATRMLLDMKGVYC---------CEPTFKSYNVVLDILVSAN 187

Query: 285 LPYKAFEI-YESMEKG-----------------------ECSL-----------DGSTYE 309
            P  A  + YE + KG                        CSL           +   Y+
Sbjct: 188 CPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQ 247

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I +L+K  R++ A+KL +EM      P  + F  ++  + +  R+    K+   M   
Sbjct: 248 TLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFR 307

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   Y  L+    + GK+D A  L +++      PN   FT++I  + KSG+LD A
Sbjct: 308 GFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP----TPNDVHFTILINGYVKSGRLDEA 363

Query: 430 MSIFTD-MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
            +   D M + G  P   T++ L+      G + SA+ + N M++ G  P L TYT LL 
Sbjct: 364 NAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLD 423

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT 547
              K+  ++ A  +L EM   G+ +++   +VL+    K+G V  AL  L  M   G + 
Sbjct: 424 GFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKP 483

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           + F    L     K    E A  L    +      + V Y +++   +R
Sbjct: 484 DIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLR 532



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 134/305 (43%), Gaps = 1/305 (0%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFK 259
           V  F+ L       G++    +MV+D S NG +     Y  ++    K ++LE +     
Sbjct: 380 VFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLN 439

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++     +++   YNVL+      G   KA ++   M    C  D  T+  +I  L K  
Sbjct: 440 EMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVD 499

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R + A+ L+++M       +   + +L+ +  + G +  ++K+  +M   G       Y 
Sbjct: 500 RKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYN 559

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            LI+++ K G  + AL L+DEM      P+     ++I    + GK+  A+ +  DM   
Sbjct: 560 GLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHR 619

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   TY+ L+      G +  A  L+N + + G++P   TY  L+    +  + D A
Sbjct: 620 GLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDA 679

Query: 500 AKILL 504
             +LL
Sbjct: 680 YLLLL 684



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 145/316 (45%), Gaps = 4/316 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           L+D+M+ +  +  +  F   N +I  L K   +  +      +  + C  +  +Y  L+ 
Sbjct: 367 LYDKMIKNGCRPDVFTF---NTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLD 423

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            F  K    +A  +   M      L+   Y +++ +L K+G++  A+ +  EM ++  +P
Sbjct: 424 GFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKP 483

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               F +L+  + K  R + ++ +Y +M   G   +   Y +LI ++ + G +  AL+L 
Sbjct: 484 DIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLV 543

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           ++M   G   +   +  +I++  K G  + A+ +F +M R   +P+  + + L+      
Sbjct: 544 NDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRV 603

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G+V +A++L   M   GL P + TY +L+  L K   +  A  +  +++  G   D    
Sbjct: 604 GKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITY 663

Query: 519 DVLMVY-IKDGSVDHA 533
           + L+ +  + G  D A
Sbjct: 664 NTLICWHCRAGMFDDA 679



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 157/360 (43%), Gaps = 20/360 (5%)

Query: 96  LDESGSVIYTGKGIRSVEPG-FDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQ 154
           LDE+ + +Y         P  F  + ++ G+ K  L  SAV  +V  ++     P L T 
Sbjct: 360 LDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAV-DMVNDMSANGCTPNLITY 418

Query: 155 LDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFD 214
              L    K   + +A  V+N+                   G E  +M ++VL  +   +
Sbjct: 419 TTLLDGFCKKNQLEEAGYVLNEMSAK---------------GFELNIMGYNVLLRALCKN 463

Query: 215 GMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           G +    +M+ + S  G    +F+ +N +I  L K D+ E +   ++ +L      +T +
Sbjct: 464 GKVPKALDMLGEMSDKGCKPDIFT-FNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVT 522

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN L+  FL  G   +A ++   M    C LD  TY  +I +  K G  + A+ LF EM 
Sbjct: 523 YNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMV 582

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
            ++  PS      L++ + + G++  ++++  +M   G  P    Y SLI    K G + 
Sbjct: 583 RKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIR 642

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A  L+++++  G +P+   +  +I  H ++G  D A  +        F+P   T+  L+
Sbjct: 643 EAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILV 702


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 151/331 (45%), Gaps = 4/331 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  K+    VP D C  +L + L E R F  +   + E++       +  F   N
Sbjct: 85  AVQCFRLTKQHKIRVPFDTCRKVL-EHLMEFRYFKLVWDFYKEVLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++Q   K  ++ ++   F  +     +    S+N L+  ++  G   + F +  +M   
Sbjct: 141 ILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K G+LD A +LF EM +    P+   F +L+    K  ++D +
Sbjct: 201 GAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M   G  P    Y +LI    K G+L     L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+IA+ +   M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             TYT ++    K++    A+K+L EM+  G
Sbjct: 381 NGTYTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 146/336 (43%), Gaps = 1/336 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           ++ LM  +L  G    A + +   ++ +  +   T   ++  L +          ++E+ 
Sbjct: 69  FSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVL 128

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           E  +  S   F  L+    K G +  +  V+  +   G RPS   + +LI  Y K G LD
Sbjct: 129 ECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLD 188

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
              RL   M  +G +P+   ++++I    K GKLD A  +F +M   G +P   T++ L+
Sbjct: 189 EGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLI 248

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             H  + +VD AM++Y  M S GL P L TY  L+  L K+  +     ++ EM   G  
Sbjct: 249 HGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLK 308

Query: 513 VD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D +S + ++    K+G ++ AL     M    IR ++     L     +      A+ +
Sbjct: 309 PDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKM 368

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           L   +    K D   YT ++    + +D +    L+
Sbjct: 369 LREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLL 404



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 141/311 (45%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L +    ++ +  +K+VL+         +N+LM  F  +G    A  +++
Sbjct: 101 FDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        ++  +I    K G LD   +L   M     +P    ++ L++ + K G
Sbjct: 161 AITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEG 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           +LD + +++ EM   G  P+   + +LI  + K  K+D A+ ++ +M   G  P+   + 
Sbjct: 221 KLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G+L     +  +M   G  P   +Y+ L++     G ++ A++L N M   
Sbjct: 281 TLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   D    + ++  + K      A
Sbjct: 341 SIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTA 400

Query: 534 LRWLRFMGSSG 544
            + LR M   G
Sbjct: 401 SKLLREMQRDG 411


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 195/448 (43%), Gaps = 15/448 (3%)

Query: 132 ASAVAKIVEVVNRWKWGPELETQLDKL--QFVPKMVHITQALKVINDSDTSLSLFRWAKR 189
           AS V+ IV ++      PE E  L K     VP  V   + L+VI D D SL  FRW  R
Sbjct: 2   ASDVSGIVAILTSVGDRPEAEAALAKYSRNLVPNTV--GRVLQVIKDVDVSLFFFRWVTR 59

Query: 190 --QSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYL 245
             +   +  +  C  +L  ++   R         DE++      N I+    YN +I   
Sbjct: 60  SHRGESIHNNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHIT----YNTLIGGF 115

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
            KA  +E ++    ++ +     D  +++ ++    N G   +A + +   E  EC+ D 
Sbjct: 116 CKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFR--ESVECAPDS 173

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
             + +++  L K+ +L  A ++ +EM ER   P    + SL+D + K+ R++ + ++   
Sbjct: 174 VLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLET 233

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M     RP+   Y +LI  Y K G    A +L + M  +G  P+   F  +I    +  K
Sbjct: 234 MVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSK 293

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           +D A  +   M++    P   TY+ L+     +G+ + A +L + M   G+ P + TY +
Sbjct: 294 IDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNS 353

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
           L+ +  +   ++ A +I   M   G   D +S   + +  +K    D A   L  M  +G
Sbjct: 354 LIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAG 413

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLL 572
              N F    L E    +   + A+ LL
Sbjct: 414 AIPNLFTFNSLMEGLCCSRRLDEARHLL 441



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 3/306 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  L D L +S   +    L + MV    +  +     YN +I    K     +
Sbjct: 205 VPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLV---TYNTLIYGYCKTGCTGL 261

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++   ++++ S    D  ++N L++ F  K    KA E+   M+KG C+ +  TY ++I 
Sbjct: 262 AHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLIS 321

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L  +GR + A +L  EM  R   P    + SL+    +  +++ + ++   M   G  P
Sbjct: 322 GLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIP 381

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y +L  +  K+ + D A  L D M  AG  PN   F  ++E    S +LD A  + 
Sbjct: 382 DGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLL 441

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M R G  P  STY  L+     +G+VD A ++   M S G++P +S+   ++  LA+ 
Sbjct: 442 AVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLARE 501

Query: 494 KLVDVA 499
              D+A
Sbjct: 502 GKQDLA 507



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 157/337 (46%), Gaps = 2/337 (0%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           +LF++L         LS   +M+ + S+ GI      YN +I  L K+ ++E +    + 
Sbjct: 174 VLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLET 233

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           ++    + +  +YN L+  +   G    A ++ E M +     D  T+  +I    +  +
Sbjct: 234 MVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSK 293

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +D A ++   MK+    P+   +  L+  +  AGR + + ++  EM G G  P    Y S
Sbjct: 294 IDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNS 353

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI  + +  +++ A ++ + M   G  P+   +  +  +  KS + D A ++  +M  AG
Sbjct: 354 LIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAG 413

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
            +P   T++ L+E    S ++D A  L   M   G  P  STY  L+T L K   VD A 
Sbjct: 414 AIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAK 473

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           ++L+ M + G    VS+S  ++    ++G  D AL +
Sbjct: 474 EVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHY 510



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN L+ +F       +AF+I   M +     DG +Y  +  +L KS R D A  L 
Sbjct: 347 DIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALL 406

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             M +    P+   F SL++ +  + RLD +  +   M+  G  P+A  Y  L+    KA
Sbjct: 407 DNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKA 466

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G++D A  +   M   G +P       I+ + A+ GK D+A+  F  +  A       +Y
Sbjct: 467 GRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPSY 526

Query: 449 SCLLE 453
             LLE
Sbjct: 527 QKLLE 531



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 43/235 (18%)

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI  + KAG ++ A +L  EM+  G  P+    + I+++   +G L  AM  F   E
Sbjct: 108 YNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFR--E 165

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
                P    ++ L+     + Q+  A ++   M+  G+ P + TY +L+  L K     
Sbjct: 166 SVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSY--- 222

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
                                           ++ A + L  M    +R N      L  
Sbjct: 223 -------------------------------RMEEARQLLETMVKRKVRPNLVTYNTLIY 251

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER-----HLM 607
              K      A  L+E  ++S    D+V + S+++    CQ  + ++     HLM
Sbjct: 252 GYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGF--CQKSKIDKACEVLHLM 304


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 173/374 (46%), Gaps = 5/374 (1%)

Query: 173 VINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           +    DTSL+L    K     V  D   Y  + D L      D  +SLF EM    +K  
Sbjct: 180 ICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM---ETKGI 236

Query: 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291
            S    YN ++  L KA K        K +       +  ++NVL+ +F+ +G   +A E
Sbjct: 237 KSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANE 296

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +Y+ M     S +  TY  ++       RL  A  +   M   N  P    F SL+    
Sbjct: 297 LYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYC 356

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K  R+D  MK++ ++   G   +   Y  L++ + ++GKL+ A  L+ EM   G  P+  
Sbjct: 357 KVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVM 416

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            + ++++    +GKL+ A+ IF D++++        Y+ ++E     G+V+ A  L+ S+
Sbjct: 417 TYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSL 476

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSV 530
              G++P + TYT +++ L K+  +  A  +L +M+  G    D + + ++  +++DG +
Sbjct: 477 PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDL 536

Query: 531 DHALRWLRFMGSSG 544
             + + +  M S G
Sbjct: 537 TASAKLIEEMKSCG 550



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 166/359 (46%), Gaps = 1/359 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I    +  K   +Y    KV+    + DT ++N L+     +    +A  +   M +
Sbjct: 104 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVE 163

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
             C  +  TY  ++  + KSG    A+ L ++M ERN +     +++++DS+ + G +D 
Sbjct: 164 NGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDA 223

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++ ++ EM+  G + S   Y SL+    KAGK +  ++L  +M      PN   F ++I+
Sbjct: 224 AISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLID 283

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
              K GKL  A  ++ +M   G  P   TY+ L++ +    ++  A  + + M      P
Sbjct: 284 VFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSP 343

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL 537
            + T+T+L+    K K VD   K+  ++   G   + V+ S ++  + + G ++ A    
Sbjct: 344 DIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELF 403

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           + M S G+  +      L +    N   E A  + E   +S   +D+V+YT ++  + +
Sbjct: 404 QEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCK 462



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 169/362 (46%), Gaps = 1/362 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + +N +I  L    K+  +     +++++ C+ +  +YN ++      G    A ++   
Sbjct: 136 TTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRK 195

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M++     D  TY  +I SL + G +DAAI LF+EM+ +  + S   + SLV  + KAG+
Sbjct: 196 MDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGK 255

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +  +++  +M      P+   +  LI+ + K GKL  A  L+ EM   G  PN   +  
Sbjct: 256 WNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNS 315

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++ +    +L  A ++   M R    P   T++ L++ +    +VD  MKL+  ++  G
Sbjct: 316 LMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRG 375

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHAL 534
           L     TY+ L+    +   +++A ++  EM ++G   DV    +L+  + D G ++ AL
Sbjct: 376 LVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKAL 435

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                +  S +  +  +   + E   K    E A  L  +      K +++ YT +++ L
Sbjct: 436 EIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 495

Query: 595 VR 596
            +
Sbjct: 496 CK 497



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 1/292 (0%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFK 259
           V+ F+VL +    +G L   +E+  +    GIS  +  YN ++      ++L  +     
Sbjct: 275 VITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLD 334

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++ ++C  D  ++  L+  +       +  +++  + K     +  TY +++    +SG
Sbjct: 335 LMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSG 394

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +L+ A +LFQEM      P    +  L+D +   G+L+ +++++ ++Q         MY 
Sbjct: 395 KLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYT 454

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            +IE   K GK++ A  L+  +   G +PN   +T++I    K G L  A  +   ME  
Sbjct: 455 IIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 514

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           G  P   TY+ L+  H   G + ++ KL   M S G     S+   ++ +L+
Sbjct: 515 GNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLS 566



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 116/241 (48%), Gaps = 3/241 (1%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           ++ D MV ++    I  F++   +I+   K  +++     F+K+       +T +Y++L+
Sbjct: 331 NMLDLMVRNNCSPDIVTFTS---LIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILV 387

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             F   G    A E+++ M       D  TY +++  L  +G+L+ A+++F+++++    
Sbjct: 388 QGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMN 447

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
               ++  +++ M K G+++ +  ++  +   G +P+   Y  +I    K G L  A  L
Sbjct: 448 LDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANIL 507

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
             +M   G  PN   +  +I +H + G L  +  +  +M+  GF    S+   +++M +S
Sbjct: 508 LRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLSS 567

Query: 458 S 458
           +
Sbjct: 568 A 568


>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
 gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 168/369 (45%), Gaps = 6/369 (1%)

Query: 167 ITQALKVI-NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           ++Q LK   N    +L +F WAK Q+ YV   E Y  + D+L +SR F  M  L  EM  
Sbjct: 140 VSQLLKRFSNQWLIALGVFIWAKNQTGYVHKPEIYNSMIDILGKSRKFSLMWDLVQEM-- 197

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
            S  NG        +V++ L +  K   +   F+ +        T++ NVLM +    G 
Sbjct: 198 -SGLNGYVSLVTMGKVMKRLVRDGKYNEAIDAFRGLEKFGLSKSTEAMNVLMDILARNGR 256

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
              A  +    E G  +LD  +Y ++     K+     A K  +EM+ER F P+   + +
Sbjct: 257 VEDARAVALEFE-GCLTLDYRSYNILSSGYCKARMFGDARKTMEEMEERGFHPNVVSYTA 315

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
            +++ G+         +  EMQ  G  P    Y   I +  KA +++ AL + +E++  G
Sbjct: 316 FIEAYGEQKDFRNVEIILNEMQEKGCPPDLITYTVYIRALGKARQINKALEICEEIKRNG 375

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
           F      +  +I S   SG+L  A +IF D+E+ G       Y  ++    +  Q +SA+
Sbjct: 376 FVLGTQFYCSLIHSLCLSGRLKDAWNIFEDVEKQGVGRDLGMYKAMISAACALSQDESAL 435

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
           KL + M     +P + TY  LL +  ++K + +   +L  M     S+D+   D+L+  +
Sbjct: 436 KLLHKMEEDSCKPDVQTYAPLLKMCCRKKSMKMLKFLLNHMFENDVSIDIVTYDLLVHGL 495

Query: 526 -KDGSVDHA 533
            K G + +A
Sbjct: 496 RKQGKLKYA 504



 Score = 40.8 bits (94), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 113/300 (37%), Gaps = 35/300 (11%)

Query: 66  FRKPNYVRS-YCSGKS-GDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVG 123
           +R  N + S YC  +  GD  K  E  EE              +G       +   +   
Sbjct: 275 YRSYNILSSGYCKARMFGDARKTMEEMEE--------------RGFHPNVVSYTAFIEAY 320

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSL 183
           G +K F N   V  I+  +      P+L T    ++ + K   I +AL++  +       
Sbjct: 321 GEQKDFRN---VEIILNEMQEKGCPPDLITYTVYIRALGKARQINKALEICEEI------ 371

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVI 242
                +++ +V G + Y  L   L  S       ++F+    D  K G+      Y  +I
Sbjct: 372 -----KRNGFVLGTQFYCSLIHSLCLSGRLKDAWNIFE----DVEKQGVGRDLGMYKAMI 422

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
                  + E +     K+ +  CK D Q+Y  L+ +   K        +   M + + S
Sbjct: 423 SAACALSQDESALKLLHKMEEDSCKPDVQTYAPLLKMCCRKKSMKMLKFLLNHMFENDVS 482

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           +D  TY+L++  L K G+L  A   FQE   +   P    +  L++ + +    +   K+
Sbjct: 483 IDIVTYDLLVHGLRKQGKLKYACFFFQEAVLKGMVPCDKTYKILLEELERKNMAEMKGKI 542


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 168/380 (44%), Gaps = 2/380 (0%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +L + +V     +G+ +   +N +I    K   +  +    +++      +D   YN L+
Sbjct: 173 ALAEMLVRGRGIDGLGVV-GWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLV 231

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             F   G    A+E+ E M+         T+  +I    K  R++ A  L++ M      
Sbjct: 232 AGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVL 291

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P     ++LVD + + GR   +  ++ EM   G  P+   Y + I+S AK  +++ +L L
Sbjct: 292 PDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGL 351

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
             EM   G   +  ++T +++   K GK++ A  +          P   TY+ L++ H  
Sbjct: 352 LGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCR 411

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           +G +D A ++   M    + P + T++++L  L KR  +  AA  + +MK  G + +V  
Sbjct: 412 AGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVT 471

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
              L+  + K    + AL   R M   G+  NNFIV  L     KN   E A+ L +   
Sbjct: 472 YGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMG 531

Query: 577 ESAAKVDLVLYTSVLAHLVR 596
           E    +D V Y +++  L +
Sbjct: 532 ERGLLLDHVNYATLMDGLFK 551



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 144/312 (46%), Gaps = 1/312 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I    K    E +   ++ +L    + +    + L+      G   +A  +++ M 
Sbjct: 472 YGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMG 531

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +    LD   Y  ++  L K+G + AA+K+ QE+ ERN  P   ++   ++ + + G+  
Sbjct: 532 ERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFS 591

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +     EM+  G  P    Y ++I +  + G    AL+L +EM+ +  +PN   +T ++
Sbjct: 592 EAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLV 651

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               ++G ++ A  +  +M  AGF PTP TY  +L+  + S      ++++  M  AGL 
Sbjct: 652 VGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLH 711

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
             ++ Y  L+ +L    +   A  +L EM   G + D ++ + +++ + K   +D+A   
Sbjct: 712 ADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFAT 771

Query: 537 LRFMGSSGIRTN 548
              M   G+  N
Sbjct: 772 YAQMLHQGLSPN 783



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 166/391 (42%), Gaps = 6/391 (1%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKV 261
           L D L     F    +LF EM     K G++     Y   I  LAK  ++  S     ++
Sbjct: 300 LVDGLCRDGRFSEAYALFREM----DKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEM 355

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           +     +D   Y  +M     +G   +A ++         + +  TY +++ +  ++G +
Sbjct: 356 VSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNI 415

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           D A ++  +M+E++  P+   F+S+++ + K G +  +     +M+  G  P+   Y +L
Sbjct: 416 DGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTL 475

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I+ + K    + AL ++ +M   G   N  +   ++    K+G ++ A ++F DM   G 
Sbjct: 476 IDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGL 535

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           L     Y+ L++    +G + +A+K+   +    L P    Y   +  L +      A  
Sbjct: 536 LLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKS 595

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
            L EM+  G   D +  + ++    ++G+   AL+ L  M  S I+ N      L    +
Sbjct: 596 FLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLL 655

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +  + E AK LL     +      + Y  VL
Sbjct: 656 EAGVVEKAKYLLNEMASAGFTPTPLTYRRVL 686



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 136/329 (41%), Gaps = 3/329 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            P    Y +L D    + + DG   +  +M   S    +  FS+   ++  L K   +  
Sbjct: 396 TPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSS---ILNGLVKRGCIAK 452

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +    +K+ DS    +  +Y  L+  F        A ++Y  M       +    + ++ 
Sbjct: 453 AAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVN 512

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K+G ++ A  LF++M ER        +A+L+D + K G +  ++KV  E+      P
Sbjct: 513 GLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSP 572

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
            A +Y   I    + GK   A     EMR  G  P+   +  +I +  + G    A+ + 
Sbjct: 573 DAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLL 632

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +M+ +   P   TY+ L+     +G V+ A  L N M SAG  P   TY  +L   +  
Sbjct: 633 NEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGS 692

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           +   V  ++   M   G   D++  + L+
Sbjct: 693 RSPYVILEVHELMMGAGLHADITVYNTLV 721



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 117/266 (43%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y RV+Q  + +    +     + ++ +    D   YN L+ +    G+  KA  + + M 
Sbjct: 682 YRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEML 741

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + D  T+  +I    KS  LD A   + +M  +   P+   F +L+  +  AGR+ 
Sbjct: 742 GRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIG 801

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  V  EM+  G  P+   Y  L+  YAK      ALRL+ EM   GF P    +  +I
Sbjct: 802 EADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLI 861

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              AK+G ++ A  +F++M+R G L T STY  LL   +          L   M   G +
Sbjct: 862 SDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFK 921

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKIL 503
           P   T +++    +K  +   A ++L
Sbjct: 922 PSKGTISSMSRAFSKPGMTWEARRLL 947



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 159/396 (40%), Gaps = 7/396 (1%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMS 254
           G E    + D L      +G +   + +  D  + G+ L    Y  ++  L K   +  +
Sbjct: 499 GVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAA 558

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               +++++ +   D   YNV +      G   +A    + M       D +TY  MI +
Sbjct: 559 LKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISA 618

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             + G    A+KL  EMK  + +P+   + +LV  + +AG ++ +  +  EM   G  P+
Sbjct: 619 QCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPT 678

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  ++++ + +      L + + M  AG   +  ++  ++      G    A  +  
Sbjct: 679 PLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLD 738

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M   G  P   T++ L+  H  S  +D+A   Y  M   GL P ++T+  LL  L    
Sbjct: 739 EMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAG 798

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +  A  ++ EMK MG   +    D+L+  Y K  +   ALR    M S G         
Sbjct: 799 RIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYN 858

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
            L     K  +   AK L      S  K   VL+TS
Sbjct: 859 SLISDFAKAGMMNQAKELF-----SEMKRRGVLHTS 889



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 147/359 (40%), Gaps = 40/359 (11%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L D L ++ +    L +  E++  + S + +     YN  I  L +  K   +    
Sbjct: 542 YATLMDGLFKTGNMPAALKVGQELMERNLSPDAV----VYNVFINCLCRLGKFSEAKSFL 597

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           K++ ++  + D  +YN +++    +G   KA ++   M+      +  TY  ++  L ++
Sbjct: 598 KEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEA 657

Query: 319 GRLDAAIKLFQEMKERNFRPS-----------------------------------FNIF 343
           G ++ A  L  EM    F P+                                     ++
Sbjct: 658 GVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVY 717

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +LV  +   G    +  V  EM G G  P    + +LI  + K+  LD A   + +M  
Sbjct: 718 NTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLH 777

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G  PN   F  ++     +G++  A ++  +M++ G  P   TY  L+  +A       
Sbjct: 778 QGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVE 837

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           A++LY  M S G  P  STY +L++  AK  +++ A ++  EMK  G     S  D+L+
Sbjct: 838 ALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILL 896



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 103/226 (45%)

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           PY   E++E M       D + Y  ++  L   G    A  +  EM  R   P    F +
Sbjct: 695 PYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNA 754

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+    K+  LD +   Y +M   G  P+   + +L+     AG++  A  +  EM+  G
Sbjct: 755 LILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMG 814

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             PN   + +++  +AK      A+ ++ +M   GF+P  STY+ L+   A +G ++ A 
Sbjct: 815 LEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAK 874

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +L++ M   G+    STY  LL   +K +       +L +MK +G+
Sbjct: 875 ELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGF 920



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 97/237 (40%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
            + YN ++  L        +     ++L      DT ++N L+           AF  Y 
Sbjct: 714 ITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYA 773

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M     S + +T+  ++  L  +GR+  A  +  EMK+    P+   +  LV    K  
Sbjct: 774 QMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKS 833

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
               ++++Y EM   G  P A  Y SLI  +AKAG ++ A  L+ EM+  G       + 
Sbjct: 834 NKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYD 893

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           +++   +K         +  DM+  GF P+  T S +    +  G    A +L  ++
Sbjct: 894 ILLNGWSKLRNGTEVRILLKDMKELGFKPSKGTISSMSRAFSKPGMTWEARRLLKTL 950


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 183/414 (44%), Gaps = 11/414 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV---IQYLA 246
           +S   P    +  L      +R  D  L L       +S   I L    N V   I  L 
Sbjct: 214 ESRLEPDAPLFSDLISAFARARLPDAALELL------ASAQAIGLTPRSNAVTALISSLG 267

Query: 247 KADKLEMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
            A ++  +   F +  L  + K  T++YN L+  ++  G    A ++ + M +   + D 
Sbjct: 268 SARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDE 327

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           +TY L++ +  ++GR ++A  L +EM+    +PS  +F+ ++      G    +  V  E
Sbjct: 328 ATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLRE 387

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G RP    Y  +I+++ K   L  A+  +D MR  G  P+   +  +I++H K G+
Sbjct: 388 MHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 447

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
            D A+ +F +M  +      +TY+ ++ +     + +    +   M   GL P + TYT 
Sbjct: 448 HDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTT 507

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG 544
           L+ +  +      A   +  MK  G     +    L+  Y + G  DHAL  ++ M + G
Sbjct: 508 LVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADG 567

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
           +  +  ++  L  +  ++     A  +L+   E+  + D++ YT+++  L+R +
Sbjct: 568 LEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVE 621



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 154/351 (43%), Gaps = 12/351 (3%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q    P +  Y +L D    +  ++    L  EM  D  K    +FS   R++       
Sbjct: 320 QCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFS---RILAGFRDRG 376

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           + + ++   +++  S  + D   YNV++  F        A + ++ M +     D  T+ 
Sbjct: 377 EWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWN 436

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I +  K GR D AI+LF EM+E N       +  +++ +G+  R +    +  EM+  
Sbjct: 437 TLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQ 496

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   Y +L++ Y ++G+   A+   + M+  G +P+  ++  ++ ++A+ G  D A
Sbjct: 497 GLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHA 556

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           +++   M   G   +    + L+       ++  A  +   M   GLRP + TYT L+  
Sbjct: 557 LNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKA 616

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
           L + +  +    I  EM T G + D  A  +L           ALR+++ M
Sbjct: 617 LIRVEQFEKVPVIYEEMITSGCAPDRKARAMLR---------SALRYMKHM 658



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 120/262 (45%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    K + L  +   F ++ +   + D  ++N L+      G   +A E+++ M 
Sbjct: 400 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMR 459

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C L  +TY +MI  L +  R +    +  EMKE+   P+   + +LVD  G++GR  
Sbjct: 460 ESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFK 519

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++     M+  G +PS  MY +L+ +YA+ G  D AL +   MR  G   +  +   +I
Sbjct: 520 EAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLI 579

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  +  ++  A S+   M+  G  P   TY+ L++      Q +    +Y  M ++G  
Sbjct: 580 NAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCA 639

Query: 478 PGLSTYTALLTLLAKRKLVDVA 499
           P       L + L   K + VA
Sbjct: 640 PDRKARAMLRSALRYMKHMRVA 661



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 145/332 (43%), Gaps = 13/332 (3%)

Query: 269 DTQSYNVLMTLFLN-KGLPYKAFEIYESMEKGECSL--DGSTYELMIPSLAKSGRLDAAI 325
           D  SY+ L+   LN +  P  A       +  E  L  D   +  +I + A++   DAA+
Sbjct: 182 DLASYSHLLASLLNTRDPPDAALLDRLLGDLRESRLEPDAPLFSDLISAFARARLPDAAL 241

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIES 384
           +L    +     P  N   +L+ S+G A R+  +  +++E    G  +P    Y +L++ 
Sbjct: 242 ELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKG 301

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           Y K G L  A ++ DEM   G  P+   ++++++++ ++G+ + A  +  +ME  G  P+
Sbjct: 302 YVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPS 361

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
              +S +L      G+   A  +   M ++G+RP    Y  ++    K   +  A     
Sbjct: 362 SYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFD 421

Query: 505 EMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS----GIRTNNFIVRQLFESC 559
            M+  G   DV   + L+  + K G  D A+     M  S    G  T N ++  L E  
Sbjct: 422 RMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGE-- 479

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                +E  + +L    E     +++ YT+++
Sbjct: 480 --EQRWEGVEAMLAEMKEQGLVPNIITYTTLV 509



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 126/286 (44%), Gaps = 9/286 (3%)

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSM-GKAGRLDTSMKVYMEMQGCGHR--PSAPMYVSL 381
           ++L   ++E +F P    ++ L+ S+       D ++   +       R  P AP++  L
Sbjct: 168 LRLLGLLREHSFLPDLASYSHLLASLLNTRDPPDAALLDRLLGDLRESRLEPDAPLFSDL 227

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I ++A+A   D AL L    +  G  P     T +I S   + ++  A ++F +   AG 
Sbjct: 228 ISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGE 287

Query: 442 L-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           + P    Y+ LL+ +   G + +A ++ + M+  G+ P  +TY+ L+    +    + A 
Sbjct: 288 IKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESAR 347

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +L EM+  G          ++   +D G    A   LR M +SG+R +      + ++ 
Sbjct: 348 ILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTF 407

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQNER 604
            K      A    +   E   + D+V + +++ AH   C+  +++R
Sbjct: 408 GKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAH---CKGGRHDR 450


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 151/331 (45%), Gaps = 4/331 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  K+    VP D C  +L + L E R F  +   + E++       +  F   N
Sbjct: 85  AVQCFRLTKQHKIRVPFDTCRKVL-EHLMEFRYFKLVWDFYKEVLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++Q   K  ++ ++   F  +     +    S+N L+  ++  G   + F +  +M   
Sbjct: 141 ILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K G+LD A +LF EM +    P+   F +L+    K  ++D +
Sbjct: 201 GAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M   G  P    Y +LI    K G+L     L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+IA+ +   M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             TYT ++    K++    A+K+L EM+  G
Sbjct: 381 NGTYTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 147/340 (43%), Gaps = 1/340 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ LM  +L  G    A + +   ++ +  +   T   ++  L +          +
Sbjct: 65  DFYVFSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   + +LI  Y K 
Sbjct: 125 KEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K GKLD A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+  H  + +VD AM++Y  M S GL P L TY  L+  L K+  +     ++ EM  
Sbjct: 245 TTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D +S + ++    K+G ++ AL     M    IR ++     L     +      
Sbjct: 305 NGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           A+ +L   +    K D   YT ++    + +D +    L+
Sbjct: 365 AEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLL 404



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 130/280 (46%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L +    ++ +  +K+VL+         +N+LM  F  +G    A  +++
Sbjct: 101 FDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        ++  +I    K G LD   +L   M     +P    ++ L++ + K G
Sbjct: 161 AITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEG 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           +LD + +++ EM   G  P+   + +LI  + K  K+D A+ ++ +M   G  P+   + 
Sbjct: 221 KLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G+L     +  +M   G  P   +Y+ L++     G ++ A++L N M   
Sbjct: 281 TLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
            +R     YTAL++ L +      A K+L EM ++G   D
Sbjct: 341 SIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPD 380


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 202/475 (42%), Gaps = 57/475 (12%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
            + + L++  D +TS+ +F+WA  Q  Y      Y +L D L  +  F     + D ++ 
Sbjct: 73  QLCKLLELPLDVETSMEIFKWAGAQKGYCHSFSVYYLLIDKLGAAAGF----KVIDRLLL 128

Query: 226 DSSKNGISLF-SAYNRVIQYLAKAD----------KLEMSYCCFKKVLDSDCKIDTQSYN 274
              + GI    S +  +++Y  +A            ++  YCC         +   +SYN
Sbjct: 129 QMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCC---------EPSFRSYN 179

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           V++ + +    P  A  ++  M     S +  T+ L++ +L     +D A  L ++M + 
Sbjct: 180 VVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKH 239

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
              P+  I+ +L+D++ K  R+D ++K+  EM   G  P    + ++I  + +  ++   
Sbjct: 240 GCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEG 299

Query: 395 LRLWDEMRIAGFRPN--------FGL-----------------------FTMIIESHAKS 423
            +L D M + GF PN         GL                       F  ++    ++
Sbjct: 300 AKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRN 359

Query: 424 GKLDIAMS-IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           G+L+ A + ++  M   G++P   T+S L+      G   SA++L N M + G +P L+T
Sbjct: 360 GRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNT 419

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMG 541
           YT L+    K+  ++ A  IL EM T G+S++    + L+    K G +  AL     M 
Sbjct: 420 YTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMS 479

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           S G + + F    L     +    E A  L    V      + V + +++   +R
Sbjct: 480 SKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLR 534



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 157/328 (47%), Gaps = 9/328 (2%)

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           LNE+  F     ++D+M+++     +  FS    ++  L K      +      +    C
Sbjct: 362 LNEATAF-----VYDKMINNGYVPDVFTFST---LVNGLCKKGLFGSALELVNDMDAKGC 413

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K +  +Y +L+  F  KG   +A  I   M     SL+   Y  +I +L K G++  A+ 
Sbjct: 414 KPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALD 473

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           +F EM  +  +P    F SL+  + +   ++ ++ +Y +M   G   ++  + +LI ++ 
Sbjct: 474 MFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFL 533

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           + G++  AL+L ++M   G   +   +  +I++  K+G ++  + +F +M R G  P+  
Sbjct: 534 RRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSII 593

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           T + L+    ++G+V +A++    M   G  P + TY +L+  L KR  +  A  +  ++
Sbjct: 594 TCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKL 653

Query: 507 KTMGYSVDVSASDVLMVYI-KDGSVDHA 533
           +  G   D    + L+ ++ ++G+ D A
Sbjct: 654 QAEGIQPDSITYNTLICWLCREGAFDDA 681



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 150/345 (43%), Gaps = 6/345 (1%)

Query: 162 PKMVHITQALK--VINDSDTSLSLFRWAKR-QSWYVPGDECYVMLFDVLNESRDFDGMLS 218
           P +VH    +   V N      + F + K   + YVP    +  L + L +   F   L 
Sbjct: 344 PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALE 403

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           L ++M     K  ++    Y  +I    K  +LE +    +++L     ++T  YN L++
Sbjct: 404 LVNDMDAKGCKPNLN---TYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALIS 460

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
                G  ++A +++  M    C  D  T+  +I  L +   ++ A+ L+++M       
Sbjct: 461 ALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIA 520

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +   F +L+ +  + G +  ++K+  +M   G       Y  LI++  K G ++  L L+
Sbjct: 521 NSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLF 580

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           +EM   G  P+     ++I     +GK+  A+    DM   GF P   TY+ L+      
Sbjct: 581 EEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKR 640

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
           G++  A+ L+  + + G++P   TY  L+  L +    D A  +L
Sbjct: 641 GRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLL 685



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 3/236 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L +F EM     K  I  F   N +I  L + D++E +   ++ ++      ++ ++N L
Sbjct: 472 LDMFGEMSSKGCKPDIFTF---NSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTL 528

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  FL +G   +A ++   M    C LD  TY  +I +L K+G ++  + LF+EM  +  
Sbjct: 529 IHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGL 588

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            PS      L++    AG++  +++   +M   G  P    Y SLI    K G++  AL 
Sbjct: 589 TPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALN 648

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
           L+++++  G +P+   +  +I    + G  D A  +       GF+P   T++ L+
Sbjct: 649 LFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILV 704



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 130/325 (40%), Gaps = 16/325 (4%)

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
           AL+++ND D      +  K      P    Y +L D   +    +    +  EM+     
Sbjct: 401 ALELVNDMDA-----KGCK------PNLNTYTILIDGFCKKGQLEEAGLILREML----T 445

Query: 230 NGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
            G SL +  YN +I  L K  K+  +   F ++    CK D  ++N L+           
Sbjct: 446 KGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMED 505

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A  +Y  M       +  T+  +I +  + G +  A+KL  +M  R        +  L+ 
Sbjct: 506 ALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIK 565

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
           ++ K G ++  + ++ EM   G  PS      LI  +  AGK+  AL    +M   GF P
Sbjct: 566 ALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSP 625

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +   +  +I    K G++  A+++F  ++  G  P   TY+ L+      G  D A  L 
Sbjct: 626 DIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLL 685

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKR 493
                 G  P   T+  L+    K+
Sbjct: 686 YRGVENGFVPNDVTWNILVYNFGKQ 710



 Score = 43.9 bits (102), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 78/201 (38%), Gaps = 16/201 (7%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMV 224
            I +ALK++ND      LFR         P DE  Y  L   L ++   +  L LF+EM+
Sbjct: 537 EIQEALKLVNDM-----LFRGC-------PLDEITYNGLIKALCKTGAVEKGLGLFEEMI 584

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
                  I      N +I     A K+  +    + ++      D  +YN L+     +G
Sbjct: 585 RKGLTPSII---TCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRG 641

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
              +A  ++E ++      D  TY  +I  L + G  D A  L     E  F P+   + 
Sbjct: 642 RIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWN 701

Query: 345 SLVDSMGKAGRLDTSMKVYME 365
            LV + GK    +     Y +
Sbjct: 702 ILVYNFGKQSNSEGQTITYAQ 722


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 171/361 (47%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++    +A   E +      ++    K    +YN ++      G+  KA+E+++ M
Sbjct: 132 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 191

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +    + D  ++ ++I    + G ++ A+K+++EM+ R  +P    F+ L+    + G++
Sbjct: 192 DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKM 251

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +M    EM+  G  P   +Y  +I  + +AG +  ALR+ DEM   G  P+   +  +
Sbjct: 252 DHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTL 311

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K  +L  A  +  +M   G  P   T++ L+  +   G++D A++L+++M +  L
Sbjct: 312 LNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL 371

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHALR 535
           RP + TY  L+  + ++  +D A  +  +M +   +   V+ S ++  + + G V+ A  
Sbjct: 372 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 431

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           +L  M + GI  N      + +   ++      +  L+  + +    DL+ Y +++   +
Sbjct: 432 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYI 491

Query: 596 R 596
           +
Sbjct: 492 K 492



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 4/335 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L ++ EM H   K  +  FS    +I   A+  K++ +    +++       D   Y ++
Sbjct: 220 LKIYKEMRHRGIKPDLVSFSC---LIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMV 276

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  F   GL   A  + + M    C  D  TY  ++  L K  RL  A  L  EM+ER  
Sbjct: 277 IGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGV 336

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    F +L+      G+LD +++++  M     RP    Y +LI+   + G LD A  
Sbjct: 337 PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAND 396

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           LWD+M      PN   ++++I+SH + G+++ A     +M   G LP   TY+ +++ + 
Sbjct: 397 LWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYC 456

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            SG V    K    M    + P L TY  L+    K   +  A K+L  M+      DV 
Sbjct: 457 RSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVV 516

Query: 517 ASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF 550
             ++L+  +   G+V  A      M + GI  + +
Sbjct: 517 TYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRY 551



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 155/317 (48%), Gaps = 5/317 (1%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLA 316
           ++ V  S+ +++T + N+++  +  K L + K   +   MEK     D  T+ +M+ +  
Sbjct: 83  YRLVFSSNSEVNTYTLNIMVHNYC-KALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARF 141

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           ++G  +AA+ L   M  +  +P    + S++  + ++G  D + +V+ EM   G  P   
Sbjct: 142 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 201

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            +  LI  + + G+++ AL+++ EMR  G +P+   F+ +I   A+ GK+D AM+   +M
Sbjct: 202 SFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 261

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK-RKL 495
              G +P    Y+ ++     +G +  A+++ + M   G  P + TY  LL  L K R+L
Sbjct: 262 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRL 321

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           +D A  +L EM+  G   D+     L+  Y  +G +D AL+    M +  +R +      
Sbjct: 322 LD-AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNT 380

Query: 555 LFESCMKNALYESAKPL 571
           L +   +    + A  L
Sbjct: 381 LIDGMCRQGDLDKANDL 397



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 162/364 (44%), Gaps = 3/364 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           ++ +I+   ++ K   ++  F+ +LD    I   + N L+      G P+ A + Y  + 
Sbjct: 28  FDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADAYRLVF 87

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                ++  T  +M+ +  K+   D    +  EM++R   P       +VD+  +AG  +
Sbjct: 88  SSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAE 147

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +M +   M   G +P    Y S+++   ++G  D A  ++ EM   G  P+   FT++I
Sbjct: 148 AAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILI 207

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               + G+++ A+ I+ +M   G  P   ++SCL+ + A  G++D AM     M   GL 
Sbjct: 208 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 267

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P    YT ++    +  L+  A ++  EM   G   DV   + L+  + K+  +  A   
Sbjct: 268 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 327

Query: 537 LRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           L  M   G+  +      L    C++  L + A  L +T +    + D+V Y +++  + 
Sbjct: 328 LNEMRERGVPPDLCTFTTLIHGYCIEGKL-DKALQLFDTMLNQRLRPDIVTYNTLIDGMC 386

Query: 596 RCQD 599
           R  D
Sbjct: 387 RQGD 390



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 126/295 (42%), Gaps = 3/295 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y M+      +      L + DEMV       +     YN ++  L K  +L  
Sbjct: 267 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMV---GCGCLPDVVTYNTLLNGLCKERRLLD 323

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++ +     D  ++  L+  +  +G   KA +++++M       D  TY  +I 
Sbjct: 324 AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID 383

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            + + G LD A  L+ +M  R   P+   ++ L+DS  + G+++ +     EM   G  P
Sbjct: 384 GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILP 443

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y S+I+ Y ++G +    +   +M +    P+   +  +I  + K  K+  A  + 
Sbjct: 444 NIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLL 503

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             ME+    P   TY+ L+   +  G V  A  ++  M + G+ P   TY +++ 
Sbjct: 504 NMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMIN 558



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 114/276 (41%), Gaps = 3/276 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L + L + R       L +EM        +  F+    +I       KL+ +   F 
Sbjct: 308 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTT---LIHGYCIEGKLDKALQLFD 364

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +L+   + D  +YN L+     +G   KA ++++ M   E   +  TY ++I S  + G
Sbjct: 365 TMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKG 424

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +++ A     EM  +   P+   + S++    ++G +    K   +M      P    Y 
Sbjct: 425 QVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYN 484

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI  Y K  K+  A +L + M     +P+   + M+I   +  G +  A  IF  M   
Sbjct: 485 TLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAK 544

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           G  P   TY  ++  H ++G    A +L++ M   G
Sbjct: 545 GIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 4/224 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L LF     Q    P    Y  L D +    D D    L+D+M    S+        
Sbjct: 357 DKALQLFDTMLNQRLR-PDIVTYNTLIDGMCRQGDLDKANDLWDDM---HSREIFPNHVT 412

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I    +  ++E ++    ++++     +  +YN ++  +   G   K  +  + M 
Sbjct: 413 YSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM 472

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
             + S D  TY  +I    K  ++  A KL   M++   +P    +  L++     G + 
Sbjct: 473 VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQ 532

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            +  ++ +M   G  P    Y+S+I  +  AG    A +L DEM
Sbjct: 533 EAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 576


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 171/365 (46%), Gaps = 2/365 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           +A   +I  L  A ++  +   F +  L  + K  T++YN L+  ++       A ++ +
Sbjct: 264 NAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLD 323

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M +   + D +TY L++ +  ++GR ++A  L +EM+    +PS  +F+ ++      G
Sbjct: 324 EMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRG 383

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
               +  V  EMQ  G RP    Y  +I+++ K   L  A+  +++MR  G  P+   + 
Sbjct: 384 DWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWN 443

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I++H K G+ D A  +F +M  +   P  +TY+ ++ +       +    + + M   
Sbjct: 444 TLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQ 503

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           GL P + TYT L+ +  +      A   +  MK  G     +    L+  Y + G  DHA
Sbjct: 504 GLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHA 563

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L  ++ M + G+  +  ++  L  +  ++     A  +L+   E+  + D++ YT+++  
Sbjct: 564 LNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKA 623

Query: 594 LVRCQ 598
           L+R +
Sbjct: 624 LIRVE 628



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 150/340 (44%), Gaps = 6/340 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q    P +  Y +L D    +  ++    L  EM  D  K    +FS   R++       
Sbjct: 327 QCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFS---RILAGFRDRG 383

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
             + ++   +++  S  + D   YNV++  F        A + +  M +     D  T+ 
Sbjct: 384 DWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWN 443

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I +  K GR D A +LF+EM+E N  P    +  +++ +G+    +    +  EM+  
Sbjct: 444 TLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQ 503

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   Y +L++ Y ++G+   A+   + M+  G +P+  ++  ++ ++A+ G  D A
Sbjct: 504 GLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHA 563

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           +++   M+  G   +    + L+       +V  A  +   M   GLRP + TYT L+  
Sbjct: 564 LNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKA 623

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVL---MVYIK 526
           L + +  D    I  EM T G + D  A  +L   + YIK
Sbjct: 624 LIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSGLKYIK 663



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 128/286 (44%), Gaps = 9/286 (3%)

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSM-GKAGRLDTSM--KVYMEMQGCGHRPSAPMYVSL 381
           ++L   ++E +F P    ++ L+ S+       D ++  ++  +++     P AP++  L
Sbjct: 175 LRLLSLLREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDL 234

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I ++A+A   D AL L    +  G  P     T +I +   +G++  A ++F +   AG 
Sbjct: 235 ISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGE 294

Query: 442 L-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           + P    Y+ LL+ +     + +A ++ + M+  G+ P  +TY+ L+    +    + A 
Sbjct: 295 IKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESAR 354

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +L EM+  G          ++   +D G    A   LR M +SG+R +      + ++ 
Sbjct: 355 ILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTF 414

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQNER 604
            K      A        E   + D+V + +++ AH   C+  +++R
Sbjct: 415 GKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAH---CKGGRHDR 457



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/185 (18%), Positives = 78/185 (42%), Gaps = 3/185 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+S   PG   Y ++ ++L E   ++G+ ++  EM     +  +     Y  ++    ++
Sbjct: 466 RESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEM---KEQGLVPNIITYTTLVDVYGRS 522

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            + + +  C + +     K     Y+ L+  +  +GL   A  + ++M+     +     
Sbjct: 523 GRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVL 582

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I +  +  R+  A  + Q M+E   RP    + +L+ ++ +  + D    +Y EM  
Sbjct: 583 NSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMIT 642

Query: 369 CGHRP 373
            G  P
Sbjct: 643 SGCAP 647


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 167/370 (45%), Gaps = 4/370 (1%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           D D +L +FR  K++    P    +  L   L +       L++F EM+    +  +++ 
Sbjct: 26  DGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVC 85

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
              N +I    +   L  +      +      +D  +Y+ LM      G   KA E++ +
Sbjct: 86  ---NTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSN 142

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M+K  C  D   Y ++I  L K G++D A++L ++M  +   P    +  ++D +   GR
Sbjct: 143 MQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGR 202

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            + +   +  M+   H P    Y +L+    K  + D A  L+DEM+     P+   F  
Sbjct: 203 YEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGT 262

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I++ AK+G+++ A+     + + G +P    Y+ L+     SGQVD   +L+  M    
Sbjct: 263 LIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECS 322

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK-DGSVDHAL 534
             P   TYT L+   ++R    +A ++L EM   G++  ++  +VL+  +   G V+ A 
Sbjct: 323 CFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAY 382

Query: 535 RWLRFMGSSG 544
              + M + G
Sbjct: 383 TLFKEMIAKG 392



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 133/259 (51%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  L K  K++ +    + +       D ++YN+++ +  + G   KA+  +  M+
Sbjct: 155 YNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMK 214

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           + + S D  TY  ++  L K  R D A  LF EM+     P    F +L+D++ KAGR++
Sbjct: 215 RRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRME 274

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +++    +   GH P++ +Y +LI  + ++G++D    L+ +M      P+   +T+++
Sbjct: 275 DALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILV 334

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              ++ G   +AM +  +M R G  P  +TY+ L+   + +GQV+ A  L+  M + G  
Sbjct: 335 LGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFN 394

Query: 478 PGLSTYTALLTLLAKRKLV 496
           P + TY+AL  L    K V
Sbjct: 395 PDMQTYSALPNLSTPNKSV 413



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 140/308 (45%), Gaps = 1/308 (0%)

Query: 215 GMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           GML     ++H  + +   L    Y+ ++  L KA +   +   F  +  + C  DT  Y
Sbjct: 96  GMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVY 155

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           NVL++    +G   +A E+ E M +     D  TY ++I  L+  GR + A   F  MK 
Sbjct: 156 NVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKR 215

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R   P    + +L++ + K  R D +  ++ EMQ     P    + +LI++ AKAG+++ 
Sbjct: 216 RKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMED 275

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           AL     +   G  PN  ++  +I    +SG++D    +F DM      P   TY+ L+ 
Sbjct: 276 ALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVL 335

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
             +  G    AM+L   M   G  P L+TY  L+  L+    V+ A  +  EM   G++ 
Sbjct: 336 GFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNP 395

Query: 514 DVSASDVL 521
           D+     L
Sbjct: 396 DMQTYSAL 403



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 147/326 (45%), Gaps = 2/326 (0%)

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDA 323
           DC  D  +YN L+  +   G   +A +++  + ++G C  +  +++ ++  L K  R   
Sbjct: 6   DCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATD 65

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A+ +FQEM     +   N+  +L+    + G L  + ++   M           Y  L++
Sbjct: 66  ALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMD 125

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           +  KAG+   AL ++  M+ AG  P+  ++ ++I    K GK+D A+ +  DM R G +P
Sbjct: 126 ALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMP 185

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              TY+ ++++ +S G+ + A   +  M      P + TY  LL  L K +  D A  + 
Sbjct: 186 DCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLF 245

Query: 504 LEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            EM+      D++    L+    K G ++ AL     +   G   N++I   L     ++
Sbjct: 246 DEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRS 305

Query: 563 ALYESAKPLLETYVESAAKVDLVLYT 588
              +    L +  +E +   D + YT
Sbjct: 306 GQVDKGYELFQDMIECSCFPDSITYT 331


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 192/447 (42%), Gaps = 5/447 (1%)

Query: 147 WGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDV 206
           +G  L T L   Q       + + L   N ++ ++++      +   VP    Y ++   
Sbjct: 180 FGCILRTGLKIHQITAST--LLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKG 237

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           L ++      L LF  M  +      ++  AYN VI    K  +   +   F ++     
Sbjct: 238 LCDNSMSQRALDLFQMMAKEGGACSPNVV-AYNTVIHGFFKEGETGKACSLFHEMTRQGV 296

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K D  +YN+++          KA  +   M       D  TY  MI   A  GRL  A K
Sbjct: 297 KPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAK 356

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           +F++MK R   P+  I  S + S+ K GR   + +++  M   GH+P    Y +L+  YA
Sbjct: 357 MFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYA 416

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
             G     + L++ M+  G   +  +F ++I ++AK G +D AM IFT+M++ G  P   
Sbjct: 417 SEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVV 476

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TYS ++   +  G++  AM+ +N M + G++P  + Y +++        +  A +++ EM
Sbjct: 477 TYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEM 536

Query: 507 KTMGYSVD--VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
              G      V  + V+    KDG V  A      +   G R +      L +       
Sbjct: 537 INKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGK 596

Query: 565 YESAKPLLETYVESAAKVDLVLYTSVL 591
            + A  +L+       + D+V Y+++L
Sbjct: 597 MDKAFKILDAMEVVGVETDIVTYSTLL 623



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 166/387 (42%), Gaps = 46/387 (11%)

Query: 213 FDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           F  M+ LF+ M      NGI+     +N +I   AK   ++ +   F ++       D  
Sbjct: 421 FADMIGLFNSM----KSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVV 476

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y+ +++ F   G    A E +  M       + + Y  +I      G L  A +L  EM
Sbjct: 477 TYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEM 536

Query: 332 KERNF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
             +   RP    F S+++S+ K GR+  +  ++  +   G RP    + SLI+ Y   GK
Sbjct: 537 INKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGK 596

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +D A ++ D M + G   +   ++ +++ + K+G+++  +++F +M+R G  P   TY  
Sbjct: 597 MDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGI 656

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           +L     +G+  +A K ++ M  +G    +S Y  +L  L +    D A  +  ++ TM 
Sbjct: 657 MLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMN 716

Query: 511 ---------------YSVD-----------VSASDVL----------MVYIKDGSVDHAL 534
                          Y V            +SAS +L          +  +KDG+V+ A 
Sbjct: 717 VKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDAN 776

Query: 535 RWLRFMGSSGI----RTNNFIVRQLFE 557
                M  SGI    R  N I+R L E
Sbjct: 777 NMFSSMEKSGIVPGSRLLNRIIRMLLE 803



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 129/280 (46%), Gaps = 9/280 (3%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N VI  L K  ++  ++  F  V D   + D  ++  L+  +   G   KAF+I ++ME
Sbjct: 549 FNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAME 608

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  TY  ++    K+GR++  + LF+EM+ +  +P+   +  ++  + +AGR  
Sbjct: 609 VVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTV 668

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + K + EM   G   +  +Y  ++    +    D A+ L+ ++     + +  +   +I
Sbjct: 669 AARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMI 728

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  K  + + A  +F  +  +G LP  STY  ++      G V+ A  +++SM  +G+ 
Sbjct: 729 NAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIV 788

Query: 478 PGLSTYTALLTLLAKRKLVDVAA---------KILLEMKT 508
           PG      ++ +L ++  +  A          +ILLE  T
Sbjct: 789 PGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEAST 828


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 179/378 (47%), Gaps = 5/378 (1%)

Query: 230 NGI-SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           NGI S F  +N +I   ++     +S+  F K+L         ++N L+     KG  ++
Sbjct: 90  NGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQ 149

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A   ++ +      LD  +Y  +I  L K GR+ AA++L + +  +  +P+  ++  ++D
Sbjct: 150 ALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIID 209

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
           +M KA  ++ +  +Y +M      P    Y +LI  ++   KL+ A+ L+++M+     P
Sbjct: 210 NMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINP 269

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           N   F ++++   K GK++ A  +   M +    P   TY+ L++ + S  +V+ A  ++
Sbjct: 270 NVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIF 329

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKD 527
           +SM S G+   +  YT ++    K K+VD A  +  EM+      + V+ S ++    K 
Sbjct: 330 DSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKL 389

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           G + +AL+ +  M   G   N      + ++  KN   + A  LL    +   + D+  Y
Sbjct: 390 GRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTY 449

Query: 588 TSVLAHLV---RCQDEQN 602
           T ++  L    R +D QN
Sbjct: 450 TILIKGLCQSGRLEDAQN 467



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 3/294 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + LF++M  ++    +  F   N ++    K  K+  +      ++  D K D  +YN L
Sbjct: 256 IDLFNKMKKENINPNVYTF---NILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSL 312

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  + +     KA +I++SM  G    +   Y  M+    K   +D AI LF+EM+ R  
Sbjct: 313 MDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKI 372

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   ++SL+D + K GR+  ++K+  EM   G  P+   Y S++++  K   +D A+ 
Sbjct: 373 IPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIA 432

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L   ++  G RP+   +T++I+   +SG+L+ A ++F D+   G+      Y+ +++   
Sbjct: 433 LLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFC 492

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             G  D A+ L + M   G  P   TY  ++  L ++   D A K+L EM   G
Sbjct: 493 DKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRG 546



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 114/240 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++      +K+  +   F  +       + Q Y  ++  F    +  +A  ++E M
Sbjct: 308 TYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEM 367

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
              +   +  TY  +I  L K GR+  A+KL  EM +R   P+   ++S++D++ K   +
Sbjct: 368 RCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHV 427

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ +   ++  G RP    Y  LI+   ++G+L+ A  +++++ + G+  +   +T++
Sbjct: 428 DKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVM 487

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+     G  D A+++ + ME  G +P   TY  ++       + D+A KL   M   GL
Sbjct: 488 IQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGL 547



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 78/171 (45%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y+ L+      G  + A ++ + M       +  TY  ++ +L K+  +D AI L   +
Sbjct: 378 TYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNL 437

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           K++  RP    +  L+  + ++GRL+ +  V+ ++   G+      Y  +I+ +   G  
Sbjct: 438 KDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFF 497

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           D AL L  +M   G  PN   + ++I S  +  + D A  +  +M   G L
Sbjct: 498 DKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGLL 548


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 157/355 (44%), Gaps = 1/355 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I+   K   LE +    +++ ++ C ++  +YN L+      G   +AF   + ME
Sbjct: 246 YSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEME 305

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 DG TY  +I  L K GR D A  L  EM      P+  ++++L+D   + G  D
Sbjct: 306 DYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNAD 365

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + K+  EM   G +P+   Y +LI    K G++  A R+  +M   G+  +   + ++I
Sbjct: 366 EAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVI 425

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E H +    + A  +  +M + G  P   TYS ++      G+ + A  L   M + GL+
Sbjct: 426 EGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLK 485

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRW 536
           P    Y  L++   +     +A + L +M     + D+   + L++ + + G +D A+ +
Sbjct: 486 PNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEY 545

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              M   G + N+F    L          E A+ LL   + S    +  +Y  +L
Sbjct: 546 YDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQIL 600



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 159/348 (45%), Gaps = 2/348 (0%)

Query: 223 MVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           ++++  K GIS     Y+ +I  L +  + E +    ++++    K +   Y  L++ + 
Sbjct: 440 LLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYC 499

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
            +G    A E  + M +   + D   Y  +I  L+  G++D AI+ + EM E+ F+P+  
Sbjct: 500 REGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDF 559

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            +  L+     AG L+ + ++  +M   G  P+  +Y  ++E Y K+  L+        M
Sbjct: 560 TYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSM 619

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G  P+  L+ ++I + + SG +  A+S+ + +E+ G +P    Y  L+     +  +
Sbjct: 620 LEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADM 679

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDV 520
           + A+ L + M   G+ PG+S Y AL+    K   +  A  I   +   G   + V+ + +
Sbjct: 680 EKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTL 739

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           +  Y K G +  A+     M + G+  + F+   L   C  +   + A
Sbjct: 740 IDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQA 787



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 129/273 (47%), Gaps = 1/273 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y+ L+  +        A ++ E M +  CSL+  TY  +I  L ++G ++ A    
Sbjct: 242 DVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYK 301

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM++    P    + ++++ + K GR D +  +  EM   G  P+  +Y +LI+ + + 
Sbjct: 302 KEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQ 361

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G  D A ++  EM  AG +PN   +  +I    K G++  A  I   M + G++    TY
Sbjct: 362 GNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTY 421

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + ++E H      + A  L N M   G+ P + TY+ ++  L +    + A+ +L +M  
Sbjct: 422 NLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIA 481

Query: 509 MGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFM 540
            G   +    + ++  Y ++GS   A   L+ M
Sbjct: 482 DGLKPNAFVYAPLISGYCREGSFSLACETLKKM 514



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 156/392 (39%), Gaps = 9/392 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN VI+   +    E ++    ++       +  +Y++++      G   +A  + E M 
Sbjct: 421 YNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMI 480

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +   Y  +I    + G    A +  ++M   N  P    + SL+  +   G++D
Sbjct: 481 ADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMD 540

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +++ Y EM   G +P+   Y  LI  Y+ AG L+ A +L  +M  +G  PN  ++  I+
Sbjct: 541 EAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQIL 600

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E + KS  L+   S    M   G +P    Y  ++   +SSG + +A+ + + +   GL 
Sbjct: 601 EGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLV 660

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P    Y +L++   K   ++ A  +L EM   G    +S  + L+  + K   + HA   
Sbjct: 661 PDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNI 720

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +   G+  N      L +   K      A  L    +      D  +Y+ + A    
Sbjct: 721 FNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSN 780

Query: 597 CQDEQNERHLM--------AILSATKHKAHAF 620
             D Q    +         AI+S+     H F
Sbjct: 781 SGDLQQALFITEEMIARGYAIISSFNTLVHGF 812



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 137/303 (45%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  L+   K++ +   + ++L+   + +  +Y  L+  +   G   KA ++   M 
Sbjct: 526 YNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQML 585

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + +   Y  ++    KS  L+      + M E+   P   ++  ++ ++  +G + 
Sbjct: 586 NSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQ 645

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ V   ++  G  P + +Y SLI  + KA  ++ A+ L DEM   G  P    +  +I
Sbjct: 646 AAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALI 705

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   KS  +  A +IF  +   G  P   TY+ L++ +  +G +  A+ LYN M + G+ 
Sbjct: 706 DGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVA 765

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537
           P    Y+ L    +    +  A  I  EM   GY++  S + ++  + K G +   +++L
Sbjct: 766 PDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRGKLQETVKFL 825

Query: 538 RFM 540
             M
Sbjct: 826 HVM 828



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 154/363 (42%), Gaps = 1/363 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I+ L K  ++  +    K++       DT +YN+++   L +    +AF +   M 
Sbjct: 386 YDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMR 445

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG  S +  TY ++I  L + G  + A  L ++M     +P+  ++A L+    + G   
Sbjct: 446 KGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFS 505

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + +   +M      P    Y SLI   +  GK+D A+  +DEM   GF+PN   +  +I
Sbjct: 506 LACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLI 565

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             ++ +G L+ A  +   M  +G  P    Y+ +LE +  S  ++       SM   GL 
Sbjct: 566 HGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLM 625

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P    Y  ++  L+    +  A  +L  ++  G   D +    ++  + K   ++ A+  
Sbjct: 626 PDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGL 685

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M   GI         L +   K+     A+ +  + +      + V YT+++    +
Sbjct: 686 LDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCK 745

Query: 597 CQD 599
             D
Sbjct: 746 AGD 748



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 141/314 (44%), Gaps = 1/314 (0%)

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
           ++++ +  K+GR+    ++   MK+    PS      L+  + +A  LD   KV   M+G
Sbjct: 177 DVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEG 236

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P    Y +LIE+Y K   L++A ++ +EMR  G   N   +  +I    ++G ++ 
Sbjct: 237 AGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEE 296

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A     +ME  G +P   TY  ++      G+ D A  L + M+ AGL P +  Y+ L+ 
Sbjct: 297 AFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLID 356

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
              ++   D A KI+ EM   G   + ++  +++    K G +  A R L+ M   G   
Sbjct: 357 GFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMA 416

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           +      + E  ++    E A  LL    +     ++  Y+ ++  L +  + +    L+
Sbjct: 417 DTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLL 476

Query: 608 AILSATKHKAHAFL 621
             + A   K +AF+
Sbjct: 477 EQMIADGLKPNAFV 490



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/405 (19%), Positives = 164/405 (40%), Gaps = 36/405 (8%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI----- 292
           Y  +I  L K  + + + C   ++  +    +   Y+ L+  F+ +G   +AF+I     
Sbjct: 316 YGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMS 375

Query: 293 ----------YESMEKGECSL--------------------DGSTYELMIPSLAKSGRLD 322
                     Y+++ +G C L                    D  TY L+I    +    +
Sbjct: 376 AAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKE 435

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A  L  EM++    P+   ++ +++ + + G  + +  +  +M   G +P+A +Y  LI
Sbjct: 436 EAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLI 495

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
             Y + G    A     +M      P+   +  +I   +  GK+D A+  + +M   GF 
Sbjct: 496 SGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQ 555

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   TY  L+  ++ +G ++ A +L + M ++GL P    Y  +L    K   ++  +  
Sbjct: 556 PNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSST 615

Query: 503 LLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
           L  M   G   D     +++  +   G +  A+  L  +  +G+  ++ I   L     K
Sbjct: 616 LKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCK 675

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            A  E A  LL+   +   +  +  Y +++    +  D  + R++
Sbjct: 676 AADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNI 720



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 116/308 (37%), Gaps = 64/308 (20%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           ++  VP    Y  L     ++ D +  + L DEM     + GIS                
Sbjct: 656 KNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGIS---------------- 699

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSY--NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
                  C+  ++D  CK D  S+  N+  ++   KGLP                    T
Sbjct: 700 -------CYNALIDGFCKSDDISHARNIFNSIIC-KGLPPNCV----------------T 735

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  +I    K+G +  AI L+ EM      P   +++ L      +G L  ++ +  EM 
Sbjct: 736 YTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMI 795

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL- 426
             G+   +  + +L+  + K GKL   ++    M      P+      I+    ++GKL 
Sbjct: 796 ARGYAIISS-FNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLS 854

Query: 427 -------------------DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
                              D   S+FTDM   G +P    ++ +++ H   G +D A+ L
Sbjct: 855 EAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLVPLDVIHN-MIQSHCKQGYLDKALML 913

Query: 468 YNSMTSAG 475
           ++++ + G
Sbjct: 914 HDALVAKG 921


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 188/411 (45%), Gaps = 11/411 (2%)

Query: 138 IVEVVNRWKWGPELETQLDK------LQFVPKMVH-ITQALKVINDSDTSLSLFRWAKRQ 190
           + +++N       +E+ LD       ++  P  V  + ++ ++    D + S F W+++Q
Sbjct: 86  VSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQ 145

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
             Y    ECYV L DVL  ++D D +  +  E+        +S   A N +I+   K   
Sbjct: 146 KKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVS---AANALIKSFGKLGM 202

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           +E     ++K+ ++  +    +YN LM   ++      A  ++E ME G    D  TY  
Sbjct: 203 VEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNT 262

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           MI    K+G+   A++  ++M+ R        + +++ +        + + +Y EM   G
Sbjct: 263 MIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKG 322

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
            +     +  +I    K GKL+    +++ M   G +PN  ++T++I+ +AKSG ++ A+
Sbjct: 323 IQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAI 382

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +   M   GF P   TYS ++     +G+V+ A+  +++    GL      Y++L+  L
Sbjct: 383 RLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGL 442

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFM 540
            K   VD A ++  EM   G + D    + L+  + K   VD A+   + M
Sbjct: 443 GKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRM 493



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 150/307 (48%), Gaps = 6/307 (1%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           ++   ++++++     +G   + + ++E+M +     + + Y ++I   AKSG ++ AI+
Sbjct: 324 QVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIR 383

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           L   M +  F+P    ++ +V+ + K GR++ ++  +   +  G   ++  Y SLI+   
Sbjct: 384 LLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLG 443

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA-GFLPTP 445
           KAG++D A RL++EM   G   +   +  +I++  K  K+D A+++F  ME   G   T 
Sbjct: 444 KAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTV 503

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ LL       + + A+KL++ M   G+ P  + + AL T L     V  A KIL E
Sbjct: 504 YTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDE 563

Query: 506 MKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
           +  MG  +D +  D++    K G +  A +      + GI      V     + M NAL 
Sbjct: 564 LAPMGVILDAACEDMINTLCKAGRIKEACKL-----ADGITERGREVPGRIRTVMINALR 618

Query: 566 ESAKPLL 572
           +  K  L
Sbjct: 619 KVGKADL 625



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 165/365 (45%), Gaps = 11/365 (3%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE 209
           ++ET+  +   +  M  I QA    +D  + ++L++    +   VP     +++  +  E
Sbjct: 282 DMETRGHEADKITYMTMI-QACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKE 340

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            +  +G  ++F+ M+   SK  +++++    +I   AK+  +E +     +++D   K D
Sbjct: 341 GKLNEG-YTVFENMIRKGSKPNVAIYTV---LIDGYAKSGSVEDAIRLLHRMIDEGFKPD 396

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             +Y+V++      G   +A + + +      +++   Y  +I  L K+GR+D A +LF+
Sbjct: 397 VVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFE 456

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ---GCGHRPSAPMYVSLIESYA 386
           EM E+        + +L+D+  K  ++D ++ ++  M+   GC    +   Y  L+    
Sbjct: 457 EMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQ--TVYTYTILLSGMF 514

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K  + + AL+LWD M   G  P    F  +      SGK+  A  I  ++   G +   +
Sbjct: 515 KEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILDAA 574

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
               ++     +G++  A KL + +T  G        T ++  L K    D+A K++   
Sbjct: 575 CED-MINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKLMHSK 633

Query: 507 KTMGY 511
             +GY
Sbjct: 634 IGIGY 638



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 165/413 (39%), Gaps = 24/413 (5%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  ++  LA +  +D    +  E+K+  F  + +   +L+ S GK G ++  + V+ +M+
Sbjct: 155 YVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMK 214

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P+   Y  L+     A  +D+A R+++ M     +P+   +  +I+ + K+G+  
Sbjct: 215 ENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQ 274

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            AM    DME  G      TY  +++   +     S + LY  M   G++     ++ ++
Sbjct: 275 KAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVI 334

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR 546
             L K   ++    +   M   G   +V+   VL+  Y K GSV+ A+R L  M   G +
Sbjct: 335 GGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK 394

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            +      +     KN   E A     T       ++ + Y+S++  L +         L
Sbjct: 395 PDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERL 454

Query: 607 MAILSATKHKAHAF----LCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAAR--YFVN 660
              +S       ++    L   FT   +  + +  F R        E EEG  +  Y   
Sbjct: 455 FEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKR-------MEEEEGCDQTVYTYT 507

Query: 661 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
           +LL+ +    +   A  +W +  +  + P A  F          R LS G  L
Sbjct: 508 ILLSGMFKEHRNEEALKLWDMMIDKGITPTAACF----------RALSTGLCL 550


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 164/402 (40%), Gaps = 37/402 (9%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    +  L + L+        + LFDEMV    +  +     Y+ +I  L K     M+
Sbjct: 45  PNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVI---TYSTIINGLCKMGSTTMA 101

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               KK+ +  CK +   Y+ ++       L  +A E    M     S +  TY  ++  
Sbjct: 102 IQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHG 161

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
               GR + A  LF++M ERN  P    F  LVD + K G +  +  V+  M   G  P+
Sbjct: 162 FCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPN 221

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +L++ Y    ++D A +L++ M   G  P+   + ++I+ H KSG++D A  +  
Sbjct: 222 VNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLA 281

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M      P   TYS L++     G+   A KL   M S GL P L TY+ +L  L K+ 
Sbjct: 282 EMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQ- 340

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
                                            G +D A   L+ M  S I  N FI   
Sbjct: 341 ---------------------------------GHLDEAFELLKAMQESKIEPNIFIYTI 367

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L +        E+A+ L         + D+V YT +++ L++
Sbjct: 368 LIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLK 409



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 154/336 (45%), Gaps = 3/336 (0%)

Query: 264 SDCKIDTQSYNVLMTLFL--NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           S+ + D  +  +L+  F   N    + AF +  +M K     +  T+  ++  L+   ++
Sbjct: 4   SNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKI 63

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             A+KLF EM +  + P    ++++++ + K G    ++++  +M+  G +P+  +Y ++
Sbjct: 64  IDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTI 123

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I+S  K   +  A+    EM   G  PN   ++ I+      G+ + A S+F  M     
Sbjct: 124 IDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNV 183

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +P   T++ L++  +  G +  A  ++ +M   G+ P ++TY AL+     +  +D A K
Sbjct: 184 MPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQK 243

Query: 502 ILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +   M   G +  V + ++L+  + K G +D A   L  M    +  +      L +   
Sbjct: 244 LFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFC 303

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           ++   + A+ LLE         DL+ Y+ VL  L +
Sbjct: 304 QDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCK 339


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 171/361 (47%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++    +A   E +      ++    K    +YN ++      G+  KA+E+++ M
Sbjct: 193 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 252

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +    + D  ++ ++I    + G ++ A+K+++EM+ R  +P    F+ L+    + G++
Sbjct: 253 DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKM 312

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +M    EM+  G  P   +Y  +I  + +AG +  ALR+ DEM   G  P+   +  +
Sbjct: 313 DHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTL 372

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K  +L  A  +  +M   G  P   T++ L+  +   G++D A++L+++M +  L
Sbjct: 373 LNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL 432

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHALR 535
           RP + TY  L+  + ++  +D A  +  +M +   +   V+ S ++  + + G V+ A  
Sbjct: 433 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 492

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           +L  M + GI  N      + +   ++      +  L+  + +    DL+ Y +++   +
Sbjct: 493 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYI 552

Query: 596 R 596
           +
Sbjct: 553 K 553



 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 4/335 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L ++ EM H   K  +  FS    +I   A+  K++ +    +++       D   Y ++
Sbjct: 281 LKIYKEMRHRGIKPDLVSFSC---LIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMV 337

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  F   GL   A  + + M    C  D  TY  ++  L K  RL  A  L  EM+ER  
Sbjct: 338 IGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGV 397

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    F +L+      G+LD +++++  M     RP    Y +LI+   + G LD A  
Sbjct: 398 PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAND 457

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           LWD+M      PN   ++++I+SH + G+++ A     +M   G LP   TY+ +++ + 
Sbjct: 458 LWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYC 517

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            SG V    K    M    + P L TY  L+    K   +  A K+L  M+      DV 
Sbjct: 518 RSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVV 577

Query: 517 ASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF 550
             ++L+  +   G+V  A      M + GI  + +
Sbjct: 578 TYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRY 612



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 155/317 (48%), Gaps = 5/317 (1%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLA 316
           ++ V  S+ +++T + N+++  +  K L + K   +   MEK     D  T+ +M+ +  
Sbjct: 144 YRLVFSSNSEVNTYTLNIMVHNYC-KALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARF 202

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           ++G  +AA+ L   M  +  +P    + S++  + ++G  D + +V+ EM   G  P   
Sbjct: 203 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 262

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            +  LI  + + G+++ AL+++ EMR  G +P+   F+ +I   A+ GK+D AM+   +M
Sbjct: 263 SFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 322

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK-RKL 495
              G +P    Y+ ++     +G +  A+++ + M   G  P + TY  LL  L K R+L
Sbjct: 323 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRL 382

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           +D A  +L EM+  G   D+     L+  Y  +G +D AL+    M +  +R +      
Sbjct: 383 LD-AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNT 441

Query: 555 LFESCMKNALYESAKPL 571
           L +   +    + A  L
Sbjct: 442 LIDGMCRQGDLDKANDL 458



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 162/364 (44%), Gaps = 3/364 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           ++ +I+   ++ K   ++  F+ +LD    I   + N L+      G P+ A + Y  + 
Sbjct: 89  FDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADAYRLVF 148

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                ++  T  +M+ +  K+   D    +  EM++R   P       +VD+  +AG  +
Sbjct: 149 SSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAE 208

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +M +   M   G +P    Y S+++   ++G  D A  ++ EM   G  P+   FT++I
Sbjct: 209 AAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILI 268

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               + G+++ A+ I+ +M   G  P   ++SCL+ + A  G++D AM     M   GL 
Sbjct: 269 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 328

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P    YT ++    +  L+  A ++  EM   G   DV   + L+  + K+  +  A   
Sbjct: 329 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 388

Query: 537 LRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           L  M   G+  +      L    C++  L + A  L +T +    + D+V Y +++  + 
Sbjct: 389 LNEMRERGVPPDLCTFTTLIHGYCIEGKL-DKALQLFDTMLNQRLRPDIVTYNTLIDGMC 447

Query: 596 RCQD 599
           R  D
Sbjct: 448 RQGD 451



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 126/295 (42%), Gaps = 3/295 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y M+      +      L + DEMV       +     YN ++  L K  +L  
Sbjct: 328 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMV---GCGCLPDVVTYNTLLNGLCKERRLLD 384

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++ +     D  ++  L+  +  +G   KA +++++M       D  TY  +I 
Sbjct: 385 AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID 444

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            + + G LD A  L+ +M  R   P+   ++ L+DS  + G+++ +     EM   G  P
Sbjct: 445 GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILP 504

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y S+I+ Y ++G +    +   +M +    P+   +  +I  + K  K+  A  + 
Sbjct: 505 NIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLL 564

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             ME+    P   TY+ L+   +  G V  A  ++  M + G+ P   TY +++ 
Sbjct: 565 NMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMIN 619



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 115/279 (41%), Gaps = 3/279 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L + L + R       L +EM        +  F+    +I       KL+ +   F 
Sbjct: 369 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTT---LIHGYCIEGKLDKALQLFD 425

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +L+   + D  +YN L+     +G   KA ++++ M   E   +  TY ++I S  + G
Sbjct: 426 TMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKG 485

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +++ A     EM  +   P+   + S++    ++G +    K   +M      P    Y 
Sbjct: 486 QVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYN 545

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI  Y K  K+  A +L + M     +P+   + M+I   +  G +  A  IF  M   
Sbjct: 546 TLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAK 605

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           G  P   TY  ++  H ++G    A +L++ M   G  P
Sbjct: 606 GIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAP 644



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 4/232 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L LF     Q    P    Y  L D +    D D    L+D+M    S+        
Sbjct: 418 DKALQLFDTMLNQRLR-PDIVTYNTLIDGMCRQGDLDKANDLWDDM---HSREIFPNHVT 473

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I    +  ++E ++    ++++     +  +YN ++  +   G   K  +  + M 
Sbjct: 474 YSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM 533

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
             + S D  TY  +I    K  ++  A KL   M++   +P    +  L++     G + 
Sbjct: 534 VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQ 593

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
            +  ++ +M   G  P    Y+S+I  +  AG    A +L DEM   GF P+
Sbjct: 594 EAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 6/281 (2%)

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           +G L AA++L +EMK   F P       ++ +M  AG LD +M  ++   GC   P+   
Sbjct: 3   AGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD-HLRSMGC--DPNVVT 59

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI ++A+A KL+ A++L +EMR  G  PN   + +++++  K   +  A  +   M 
Sbjct: 60  YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 119

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             GF P   T++ L++     G VD A KL   M + G+RP + TY+AL+  L K +   
Sbjct: 120 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFL 179

Query: 498 VAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A ++L EMK  G + D  + S ++    K   ++ A + LR M  SG   +  +   + 
Sbjct: 180 EAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 239

Query: 557 ES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            + C    L E+ K L E   +  +  D+V Y +V+  L +
Sbjct: 240 HAFCKSGKLLEAQKTLQEMRKQRKSP-DVVTYNTVIDGLCK 279



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 13/345 (3%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  ++  ++T   N G    A +   SM    C  +  TY  +I + A++ +L+ A+KL 
Sbjct: 24  DAFTHTPIITAMANAGDLDGAMDHLRSMG---CDPNVVTYTALIAAFARAKKLEEAMKLL 80

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM+ER   P+   +  LVD++ K   +  +  V  +M   G  P+   + SL++ + K 
Sbjct: 81  EEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKR 140

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G +D A +L   M   G RPN   ++ +I+   KS K   A  +  +M+ +G  P   TY
Sbjct: 141 GNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTY 200

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S L+     + +++ A ++   M  +G  P +  Y++++    K   +  A K L EM+ 
Sbjct: 201 SALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRK 260

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSG-----IRTNNFIVRQLFESCMKN 562
              S D V+ + V+    K G +  A   L  M  SG     + T + ++  L   C  +
Sbjct: 261 QRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGL---CKSD 317

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
            L E+ K LL+   ++    D+V YT+++  L +C   +   +L+
Sbjct: 318 MLVEAQK-LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLL 361



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 183/408 (44%), Gaps = 8/408 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           + + + P    +  +   +  + D DG +     M  D +         Y  +I   A+A
Sbjct: 17  KSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPN------VVTYTALIAAFARA 70

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            KLE +    +++ +  C  +  +YNVL+       +   A ++ + M +G  + +  T+
Sbjct: 71  KKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTF 130

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++    K G +D A KL   M  +  RP+   +++L+D + K+ +   + +V  EM+ 
Sbjct: 131 NSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKA 190

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P A  Y +LI    KA K++ A ++   M  +G  P+  +++ II +  KSGKL  
Sbjct: 191 SGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLE 250

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-LRPGLSTYTALL 487
           A     +M +    P   TY+ +++     G++  A  + + M  +G + P + TY+ ++
Sbjct: 251 AQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVI 310

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
             L K  ++  A K+L  M   G + D V+ + ++    K G ++ A   L+ M  +G  
Sbjct: 311 NGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCA 370

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            N      L     K    + A+ ++E    +    +LV Y +++  L
Sbjct: 371 PNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGL 418



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 148/333 (44%), Gaps = 2/333 (0%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C  +  +Y  L+  F       +A ++ E M +  C  +  TY +++ +L K   + AA 
Sbjct: 53  CDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQ 112

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            + ++M E  F P+   F SLVD   K G +D + K+   M   G RP+   Y +LI+  
Sbjct: 113 DVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGL 172

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K+ K   A  + +EM+ +G  P+   ++ +I    K+ K++ A  +   M  +G  P  
Sbjct: 173 CKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDV 232

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
             YS ++     SG++  A K    M      P + TY  ++  L K   +  A  IL +
Sbjct: 233 VVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQ 292

Query: 506 MKTMGYSVD--VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
           M+  G  +   V+ S V+    K   +  A + L  M  +G   +      + +   K  
Sbjct: 293 MQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCG 352

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             E A+ LL+    +    ++V YT++++ L +
Sbjct: 353 RLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 385



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 141/319 (44%), Gaps = 4/319 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +  + P    +  L D   +  + D    L   MV    +  +  +SA   +I  L K+ 
Sbjct: 120 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSA---LIDGLCKSQ 176

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           K   +    +++  S    D  +Y+ L+          +A ++   M    C+ D   Y 
Sbjct: 177 KFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 236

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I +  KSG+L  A K  QEM+++   P    + +++D + K G++  +  +  +MQ  
Sbjct: 237 SIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQES 296

Query: 370 GH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           G   P    Y ++I    K+  L  A +L D M  AG  P+   +T II+   K G+L+ 
Sbjct: 297 GDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEE 356

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +   M+RAG  P   TY+ L+     + +VD A ++   M +AG  P L TY  ++ 
Sbjct: 357 AEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVN 416

Query: 489 LLAKRKLVDVAAKILLEMK 507
            L     +  A +++  MK
Sbjct: 417 GLCVSGRIKEAQQLVQRMK 435



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 43/311 (13%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           Y  L D L +S+ F     + +EM      +G++  +  Y+ +I  L KADK+E +    
Sbjct: 165 YSALIDGLCKSQKFLEAKEVLEEM----KASGVTPDAFTYSALIHGLCKADKIEEAEQML 220

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK---------------GECSL 303
           +++  S C  D   Y+ ++  F   G   +A +  + M K               G C L
Sbjct: 221 RRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKL 280

Query: 304 ---------------------DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
                                D  TY  +I  L KS  L  A KL   M +    P    
Sbjct: 281 GKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVT 340

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           + +++D + K GRL+ +  +   M+  G  P+   Y +LI    KA K+D A R+ +EMR
Sbjct: 341 YTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMR 400

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME--RAGFLPTPSTYSCLLEMHASSGQ 460
            AG  PN   +  ++     SG++  A  +   M+  RA   P  +TY  ++    SS  
Sbjct: 401 NAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDL 460

Query: 461 VDSAMKLYNSM 471
           V  A +L   M
Sbjct: 461 VQEAEQLLEQM 471



 Score = 40.4 bits (93), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/158 (19%), Positives = 78/158 (49%), Gaps = 4/158 (2%)

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD- 514
            ++G + +A++L   M SAG  P   T+T ++T +A    +D A   +  +++MG   + 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNV 57

Query: 515 VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
           V+ + ++  + +   ++ A++ L  M   G   N      L ++  K ++  +A+ +++ 
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
            +E     +++ + S++    +  +  + R L+ I+ A
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVA 155


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 170/365 (46%), Gaps = 2/365 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           +A   +I  L  A ++  +   F +  L  + K  T++YN L+  ++  G    A ++ +
Sbjct: 124 NAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLD 183

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M +   + D +TY L++ +  ++GR ++A  L +EM+    +PS  +F+ ++      G
Sbjct: 184 EMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRG 243

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
               +  V  EM   G RP    Y  +I+++ K   L  A+  +D MR  G  P+   + 
Sbjct: 244 EWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWN 303

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I++H K G+ D A+ +F +M  +      +TY+ ++ +     + +    +   M   
Sbjct: 304 TLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQ 363

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           GL P + TYT L+ +  +      A   +  MK  G     +    L+  Y + G  DHA
Sbjct: 364 GLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHA 423

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L  ++ M + G+  +  ++  L  +  ++     A  +L+   E+  + D++ YT+++  
Sbjct: 424 LNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKA 483

Query: 594 LVRCQ 598
           L+R +
Sbjct: 484 LIRVE 488



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 154/351 (43%), Gaps = 12/351 (3%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q    P +  Y +L D    +  ++    L  EM  D  K    +FS   R++       
Sbjct: 187 QCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFS---RILAGFRDRG 243

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           + + ++   +++  S  + D   YNV++  F        A + ++ M +     D  T+ 
Sbjct: 244 EWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWN 303

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I +  K GR D AI+LF EM+E N       +  +++ +G+  R +    +  EM+  
Sbjct: 304 TLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQ 363

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   Y +L++ Y ++G+   A+   + M+  G +P+  ++  ++ ++A+ G  D A
Sbjct: 364 GLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHA 423

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           +++   M   G   +    + L+       ++  A  +   M   GLRP + TYT L+  
Sbjct: 424 LNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKA 483

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
           L + +  +    I  EM T G + D  A  +L           ALR+++ M
Sbjct: 484 LIRVEQFEKVPVIYEEMITSGCAPDRKARAMLR---------SALRYMKHM 525



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 121/262 (46%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    K + L  +   F ++ +   + D  ++N L+      G   +A E+++ M 
Sbjct: 267 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMR 326

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C L  +TY +MI  L +  R +    +  EMKE+   P+   + +LVD  G++GR  
Sbjct: 327 ESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFK 386

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++     M+  G +PS+ MY +L+ +YA+ G  D AL +   MR  G   +  +   +I
Sbjct: 387 EAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLI 446

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  +  ++  A S+   M+  G  P   TY+ L++      Q +    +Y  M ++G  
Sbjct: 447 NAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCA 506

Query: 478 PGLSTYTALLTLLAKRKLVDVA 499
           P       L + L   K + VA
Sbjct: 507 PDRKARAMLRSALRYMKHMRVA 528



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 134/301 (44%), Gaps = 12/301 (3%)

Query: 299 GECSL--DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           GE  L  D   +  +I + A++   DAA++L    +     P  N   +L+ S+G A R+
Sbjct: 80  GESRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRV 139

Query: 357 DTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
             +  +++E    G  +P    Y +L++ Y K G L  A ++ DEM   G  P+   +++
Sbjct: 140 AEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSL 199

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++++ ++G+ + A  +  +ME  G  P+   +S +L      G+   A  +   M ++G
Sbjct: 200 LVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASG 259

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           +RP    Y  ++    K   +  A      M+  G   DV   + L+  + K G  D A+
Sbjct: 260 VRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAI 319

Query: 535 RWLRFMGSS----GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
                M  S    G  T N ++  L E       +E  + +L    E     +++ YT++
Sbjct: 320 ELFDEMRESNCPLGTTTYNIMINLLGE----EQRWEGVEAMLAEMKEQGLVPNIITYTTL 375

Query: 591 L 591
           +
Sbjct: 376 V 376



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 6/237 (2%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P AP++  LI ++A+A   D AL L    +  G  P     T +I S   + ++  A ++
Sbjct: 86  PDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEAL 145

Query: 433 FTDMERAGFL-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           F +   AG + P    Y+ LL+ +   G + +A ++ + M+  G+ P  +TY+ L+    
Sbjct: 146 FLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYT 205

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNF 550
           +    + A  +L EM+  G          ++   +D G    A   LR M +SG+R +  
Sbjct: 206 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRH 265

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQNERHL 606
               + ++  K      A    +   E   + D+V + +++ AH   C+  +++R +
Sbjct: 266 FYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAH---CKGGRHDRAI 319


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 177/388 (45%), Gaps = 32/388 (8%)

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           +I++++ R  + P+  T    + F      + +A+KV    + +  LF+  K     +P 
Sbjct: 441 QIIKLMMRKGFVPDTSTYSKVITF------LCEAMKV----EKAFLLFQEMKSVG-VIPD 489

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
              Y +L D   +    +   S FDEM        +  ++A   ++    K  ++  +  
Sbjct: 490 VYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTA---LLHAYLKTKQVPQASD 546

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS---------- 306
            F +++D+ C  +T +Y+ L+      G   KA E+Y  M  G     GS          
Sbjct: 547 IFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKM-IGTSDNVGSDFYFEGEHTD 605

Query: 307 -------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
                  TY  +I  L K+ ++  A +L   M      P+  I+ +L+D   K G+LD +
Sbjct: 606 SIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNA 665

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            +V+  M  CG+ P+   Y SLI++  K  +LD A+++  +M  +   PN   +T +I+ 
Sbjct: 666 QEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDG 725

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             + G+   A+ + + ME+ G  P   TY+ L++    SG+VD +++L+  M + G  P 
Sbjct: 726 LCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPN 785

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMK 507
             TY  L+       L+D A  +L EMK
Sbjct: 786 YVTYRVLINHCCAAGLLDEAHSLLSEMK 813



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 170/398 (42%), Gaps = 23/398 (5%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYK-----A 289
           S +N ++     A     +Y    ++    C      YN+ + ++   + LP       A
Sbjct: 345 SLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALA 404

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            ++YE M    C L+          L   G+ D A ++ + M  + F P  + ++ ++  
Sbjct: 405 EKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITF 464

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + +A +++ +  ++ EM+  G  P    Y  LI+S+ K G ++ A   +DEM   G  P+
Sbjct: 465 LCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPS 524

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              +T ++ ++ K+ ++  A  IF  M  AG  P   TYS L++    +G+   A ++Y 
Sbjct: 525 VVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYA 584

Query: 470 SMTSA----------------GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            M                    + P + TY AL+  L K   V  A ++L  M + G   
Sbjct: 585 KMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEP 644

Query: 514 DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           +    D L+  + K G +D+A      M   G          L ++  K+   + A  +L
Sbjct: 645 NHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVL 704

Query: 573 ETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
              +ES+   ++V YT+++  L R  + Q    L++++
Sbjct: 705 SQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMM 742



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 145/295 (49%), Gaps = 6/295 (2%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNG-ISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           +++D L +     G L    E+    SK G +     Y  +I  + K  +L+++     +
Sbjct: 647 IIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQ 706

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +L+S C  +  +Y  ++      G   KA ++   MEK  C+ +  TY  +I  L KSG+
Sbjct: 707 MLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGK 766

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +D +++LF +M  +   P++  +  L++    AG LD +  +  EM+          Y S
Sbjct: 767 VDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCS 826

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           +++ ++K  K   +L L +E+   G      ++ ++I+S +K+G+L+ A+ +  +M    
Sbjct: 827 VVQGFSK--KFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVS 884

Query: 441 F---LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
               + +  TY+ L++    + Q++ A +LY+ +T  G+ P LS +  L+  L K
Sbjct: 885 SSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIK 939



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 106/466 (22%), Positives = 176/466 (37%), Gaps = 71/466 (15%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVL---NESRDFDGML------ 217
           +   L+ +   +  +  F WA+RQ  Y     CY  L +VL   + +R  + +L      
Sbjct: 107 VVAVLRSVRTPELCVRFFLWAERQVGYSHTGACYNALAEVLHFDDRARTTERLLREIGED 166

Query: 218 ------SLFDEMVHDSSKNG-----------ISLF------SAYNRVIQYLAKADKL--- 251
                  L + +V    ++G           +  F      + YN ++Q LA A ++   
Sbjct: 167 DREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMG 226

Query: 252 --------EMSYC-------CFKKVL--------------DSDCKIDTQSYNVLMTLFLN 282
                   E+ +C       CF + L                D K+DT     +++  + 
Sbjct: 227 FRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLME 286

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
             L  +A      M    C  +  TY  ++    K  +L    ++   M      P+ ++
Sbjct: 287 ASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSL 346

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT------ALR 396
           F SLV S   A     + K+   M GCG  P   +Y   I S     +L +      A +
Sbjct: 347 FNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEK 406

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +++EM  +    N              GK D A  I   M R GF+P  STYS ++    
Sbjct: 407 VYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLC 466

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-V 515
            + +V+ A  L+  M S G+ P + TYT L+    K  L++ A     EM+++G S   V
Sbjct: 467 EAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVV 526

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
           + + +L  Y+K   V  A      M  +G   N      L +   K
Sbjct: 527 TYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCK 572



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 119/293 (40%), Gaps = 39/293 (13%)

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA----- 237
            FR +K    Y+P    Y  L D + + R  D  + +  +M+  S    +  ++A     
Sbjct: 669 FFRMSK--CGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGL 726

Query: 238 ---------------------------YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
                                      Y  +I  L K+ K++MS   F +++   C  + 
Sbjct: 727 CRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNY 786

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            +Y VL+      GL  +A  +   M++         Y  ++   +K  +  A++ L +E
Sbjct: 787 VTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSK--KFIASLGLLEE 844

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY---MEMQGCGHRPSAPMYVSLIESYAK 387
           ++         ++  L+DS  KAGRL+ +++++   ME+    +  S   Y SLI++   
Sbjct: 845 LESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCL 904

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           A +L+ A  L+ E+   G  P    F  +I+   K  K + A+ +   M   G
Sbjct: 905 ASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEG 957


>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 978

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 179/374 (47%), Gaps = 6/374 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ML  V   ++D DG L +   ++         +F  Y  +I   AKA K+++ +  F 
Sbjct: 298 YTMLLSVCCHAKDIDGALRVL-ALLESRGLKADCMF--YTSLISACAKAGKVDLLFQIFH 354

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++  +  + +  ++  ++      G   KAF  Y  M       D   +  +I +  ++G
Sbjct: 355 EMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKNVKPDRVIFNTLINACTRAG 414

Query: 320 RLDAAIKLFQEMKERN--FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            +  A  +  +MK      +P    + +L+ +  +AG +D +++VY  M+    + S   
Sbjct: 415 AVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQNMRESNVKGSPAC 474

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +++ + ++ G +D AL ++D+++  G +P+   F+ ++++   +  ++ A SI  +M+
Sbjct: 475 YTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSALVDAAGHAQDIEKAFSIIANMK 534

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           + G  P    YS L+ + ++ G  + A+++Y  + S+GL+P +ST+ AL+T L +     
Sbjct: 535 KEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTALCEANQFT 594

Query: 498 VAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  IL ++K  G   + +S S +L    K+   D AL       S GI+ N  I   + 
Sbjct: 595 RALSILQDVKNSGIMPNQISYSILLRACEKEKMADMALDLYMTALSEGIKPNVGICDSIT 654

Query: 557 ESCMKNALYESAKP 570
             C++     +A P
Sbjct: 655 GLCLQQIQSYAAAP 668



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/287 (19%), Positives = 124/287 (43%), Gaps = 36/287 (12%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y +++     +  +D A+++   ++ R  +     + SL+ +  KAG++D   +++ EM+
Sbjct: 298 YTMLLSVCCHAKDIDGALRVLALLESRGLKADCMFYTSLISACAKAGKVDLLFQIFHEME 357

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G   +   + ++I+  A+AG+L  A   +  M     +P+  +F  +I +  ++G + 
Sbjct: 358 VAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKNVKPDRVIFNTLINACTRAGAVQ 417

Query: 428 IAMSIFTDM--ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
            A  + TDM  E     P   TY  L+   A +G+VD A+++Y +M  + ++   + YTA
Sbjct: 418 RAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQNMRESNVKGSPACYTA 477

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           ++   +++                                  G+VD+AL     +   G+
Sbjct: 478 VVHACSQK----------------------------------GNVDYALLVYDDLKKDGV 503

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           + +      L ++       E A  ++    +   K   V+Y+S++ 
Sbjct: 504 KPDEVFFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVVYSSLMG 550



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 92/217 (42%), Gaps = 15/217 (6%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+S       CY  +    ++  + D  L ++D++  D  K     FSA   ++     A
Sbjct: 464 RESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSA---LVDAAGHA 520

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             +E ++     +     K     Y+ LM +  N G   KA E+Y+ +         ST+
Sbjct: 521 QDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTF 580

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++ +L ++ +   A+ + Q++K     P+   ++ L+ +  K    D ++ +YM    
Sbjct: 581 NALMTALCEANQFTRALSILQDVKNSGIMPNQISYSILLRACEKEKMADMALDLYMTALS 640

Query: 369 CGHRPSAPMYVSL-------IESYAKAGKLDTALRLW 398
            G +P+  +  S+       I+SYA A +     +LW
Sbjct: 641 EGIKPNVGICDSITGLCLQQIQSYAAAPQ-----KLW 672


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 169/373 (45%), Gaps = 1/373 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F   N +I       ++  S+    K+L    + DT + N LM     KG   K+   ++
Sbjct: 45  FVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHD 104

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            +      +D  +Y  ++  L K G    A+KL + +++R+ RP+  ++ +++D + K  
Sbjct: 105 KVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDK 164

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            ++ +  +Y EM   G  P A  Y +LI  +   G+L  A  L DEM +    P   ++ 
Sbjct: 165 LVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYN 224

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I +  K G +  A ++   M + G  P   TYS L++ +   G+V +A +++++M   
Sbjct: 225 ILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQM 284

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHA 533
           G+ P + +Y  ++  L K K VD A  +L EM       D V+ + ++    K G +  A
Sbjct: 285 GVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSA 344

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L  +  M   G   +      L ++  KN   + A  L     E   +  +  YT+++  
Sbjct: 345 LNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDG 404

Query: 594 LVRCQDEQNERHL 606
           L +    +N + L
Sbjct: 405 LCKGGRLKNAQEL 417



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 8/332 (2%)

Query: 215 GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           G  SL DEM+  +   G+ +   YN +I  L K   ++ +      +     K    +Y+
Sbjct: 203 GAFSLLDEMILKNINPGVYI---YNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYS 259

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            LM  +   G    A +I+ +M +   + +  +Y +MI  L K  R+D A+ L +EM  +
Sbjct: 260 TLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHK 319

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
           N  P    + SL+D + K+GR+ +++ +  EM   G       Y SL+++  K   LD A
Sbjct: 320 NMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKA 379

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             L+ +M+  G +P    +T +I+   K G+L  A  +F  +   G      TY+ ++  
Sbjct: 380 TALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISG 439

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV- 513
               G  D A+ + + M   G  P   T+  ++  L ++   D A K+L EM   G  V 
Sbjct: 440 LCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLVL 499

Query: 514 DVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           D   +DV +        D A + L  M + G+
Sbjct: 500 DFKVADVFV----QNENDKAEKLLHEMIAKGL 527



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 103/272 (37%), Gaps = 36/272 (13%)

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           H P    +  ++ S AK  +  TA+ L  +M + G R NF    ++I      G++  + 
Sbjct: 6   HTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSF 65

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL-------------- 476
           S+   + + G+ P   T + L++     G+V  ++  ++ + + G               
Sbjct: 66  SVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGL 125

Query: 477 ---------------------RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD- 514
                                RP +  Y  ++  L K KLV+ A  +  EM   G   D 
Sbjct: 126 CKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDA 185

Query: 515 VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
           ++ + ++  +   G +  A   L  M    I    +I   L  +  K    + AK LL  
Sbjct: 186 ITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAV 245

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
             +   K  +V Y++++       + QN + +
Sbjct: 246 MTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQI 277


>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 484

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 201/479 (41%), Gaps = 43/479 (8%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L    +++ +L  FRW +R +      E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHGAKNAEHALQFFRWVERSNLLEHNREIHLKIIEILGRASKLNHA 64

Query: 217 LSL----------FDE-----MVHDSSKNGI-----SLFS------------AYNRVIQY 244
             +          +DE     M+    K GI      LF             +Y+ + + 
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
           +++  +  MS   F K+++   +    ++NVL+  F   G    A   +E M+  E + D
Sbjct: 125 ISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSREITPD 184

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  MI    +  +++ A K F EMKER   P+   + +L+       R+D ++++  
Sbjct: 185 VITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVE 244

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP-NFGLFTMIIESHAKS 423
           EM+G G +P+A  Y +L+     A K+  A  +  EM      P +  +F  +I S  K+
Sbjct: 245 EMKGLGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPTDNSIFMRLISSQCKA 304

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LRPG-- 479
           G LD A  +   M R         Y  L+E +  +GQ D A+KL + +      LRP   
Sbjct: 305 GNLDAAADVLKAMIRLSVPTEAGHYGVLIEYYCKAGQYDKAVKLLDKLIEKDIILRPQST 364

Query: 480 ----LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALR 535
               LS Y  L+  L        A  ++ ++  +G     S + ++  + ++GS D A  
Sbjct: 365 LHMELSAYNPLIEYLCNNGQTAKAETLVRQLMKLGVQDPTSLNTLIRGHSQEGSPDSAFE 424

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+  L
Sbjct: 425 LLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVMESL 483


>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
 gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
          Length = 445

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 163/353 (46%), Gaps = 6/353 (1%)

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAF--EIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
           D  +   S  VL  L L KG     F  E    + + +C  +  +Y  +I +L  SGR+ 
Sbjct: 42  DTGMSPGSLVVLHNLML-KGFSEAGFVDEAKSHLHRMDCKPNSVSYNTLIDALCSSGRIQ 100

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A +  Q M +R   P+   + ++   +GKAG LD + ++   M+  G   +A  +  ++
Sbjct: 101 EAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPVV 160

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           E   K+G+ D A ++ + M +    PN     +I+ +  K+ + + A+ +   M   GF 
Sbjct: 161 EFLCKSGRPDEACKVMETMLLRNIEPNILTLNLILHAFCKAARPEEALGMTDIMVEMGFC 220

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           PT  T++ LLE+  ++ Q+DSA KL  +M  +  +P   TY+ ++   A+   +  A   
Sbjct: 221 PTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAF 280

Query: 503 LLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
           L ++   GY+ ++   +  +  + K G +D A R+L  M   G R N      L E   K
Sbjct: 281 LEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCK 340

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK 614
               + A+ +LE  +   +  D   Y+ ++  L  C   Q E   M +L  T+
Sbjct: 341 LGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGL--CSAGQIEHAFMVMLQVTR 391



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 131/272 (48%), Gaps = 4/272 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM- 296
           +N V+++L K+ + + +    + +L  + + +  + N+++  F     P +A  + + M 
Sbjct: 156 FNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLILHAFCKAARPEEALGMTDIMV 215

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E G C     T+  ++     + ++D+A KL + M     +P+F  ++ +V    + GR+
Sbjct: 216 EMGFCPTI-VTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFVTYSIMVQKFAEMGRM 274

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +     ++  CG+ P+  +  + +    K G++D A R    M   G R N   +  +
Sbjct: 275 VEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSL 334

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-- 474
           +E   K G++D A  +  +M   G LP  +TYS L++   S+GQ++ A  +   +T A  
Sbjct: 335 VEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEHAFMVMLQVTRAVE 394

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
             RP  +T+  L+  L +   +D AA +L  M
Sbjct: 395 SARPDPATFVKLIEKLCELGEMDRAALVLERM 426



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 141/313 (45%), Gaps = 5/313 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEM 253
           P    Y  L D L  S    G +    E +   +K G++     YN +   L KA  L+ 
Sbjct: 81  PNSVSYNTLIDALCSS----GRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDE 136

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++     +  +   +   ++N ++      G P +A ++ E+M       +  T  L++ 
Sbjct: 137 AFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLILH 196

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  K+ R + A+ +   M E  F P+   F +L++      ++D++ K+   M     +P
Sbjct: 197 AFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKP 256

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y  +++ +A+ G++  A    +++ + G+ PN  +    +    K+G++D+A    
Sbjct: 257 NFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFL 316

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           T M   G     +TY+ L+E     G++D A ++   M + G  P  +TY+ L+  L   
Sbjct: 317 TVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSA 376

Query: 494 KLVDVAAKILLEM 506
             ++ A  ++L++
Sbjct: 377 GQIEHAFMVMLQV 389


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 194/455 (42%), Gaps = 50/455 (10%)

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS----SKNGISLFSAY 238
           +F+ A +   Y  GD  +  L +    S DF  +  +FD M  +      KN I +F AY
Sbjct: 66  IFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAY 125

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
                   KA   E +   F +++D   C+   +S+N ++ + + +GL ++A E YE   
Sbjct: 126 -------GKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGV 178

Query: 298 KGECSLDGS--TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
            G+ ++  +  ++ L+I ++ K G +D AI++F+EM  +   P    + +L+D + K  R
Sbjct: 179 GGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDR 238

Query: 356 LDTSMKVYMEMQ--GC---------------------------------GHRPSAPMYVS 380
           +D ++ +  EMQ  GC                                 G  P+   Y +
Sbjct: 239 IDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNT 298

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           +I      GKLD A+ L D M  +   PN   +  +I    K G+    + + + +E  G
Sbjct: 299 IINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERG 358

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
                  YS L+       + + AM L+  M   G +P +  Y+AL+  L +   +D A 
Sbjct: 359 HHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAK 418

Query: 501 KILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           +IL EM   G + +  + S ++  + K G+   A+R  + M  +    N      L    
Sbjct: 419 EILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGL 478

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            ++     A  +    +    + D+V Y+S++  L
Sbjct: 479 CEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGL 513



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 144/293 (49%), Gaps = 2/293 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L    KL+ +     +++ S C  +  +Y  L+   + +G       +  S+
Sbjct: 295 TYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSL 354

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+     +   Y  +I  L K  + + A+ L+++M E+  +P+  ++++L+D + + G+L
Sbjct: 355 EERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKL 414

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++  EM   G  P+A  Y SLI+ + K G    A+R+W EM      PN   ++++
Sbjct: 415 DEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVL 474

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM--TSA 474
           I    + GKL  AM ++T M   G  P    YS ++    ++G V+  +KL+N M    +
Sbjct: 475 IHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQES 534

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
             +P + TY  LL  L K+  +  A  +L  M   G + D+   ++ +  +++
Sbjct: 535 DSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALRE 587



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 165/388 (42%), Gaps = 12/388 (3%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++  L K D+++ +     ++    C   + ++NVL+     KG   +  ++ ++M
Sbjct: 225 TYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNM 284

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  TY  +I  L   G+LD A+ L   M      P+   + +L++ + K GR 
Sbjct: 285 FLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRS 344

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
              + +   ++  GH  +   Y +LI    K  K + A+ LW +M   G +PN  +++ +
Sbjct: 345 VDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSAL 404

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   + GKLD A  I  +M   G  P   TYS L++    +G    A++++  M     
Sbjct: 405 IDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNC 464

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P    Y+ L+  L +   +  A  +   M   G   DV A S ++      GSV+  L+
Sbjct: 465 VPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLK 524

Query: 536 WLRFM------GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
               M          + T N ++R L   C +N++   A  LL + ++     DL+    
Sbjct: 525 LFNEMLCQESDSQPDVVTYNILLRAL---CKQNSI-SHAIDLLNSMLDRGCNPDLITCNI 580

Query: 590 VLAHL-VRCQDEQNERHLMAILSATKHK 616
            L  L  +    Q+ R  +  L    HK
Sbjct: 581 FLNALREKLNPPQDGREFLDELVVRLHK 608


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 188/411 (45%), Gaps = 11/411 (2%)

Query: 138 IVEVVNRWKWGPELETQLDK------LQFVPKMVH-ITQALKVINDSDTSLSLFRWAKRQ 190
           + +++N       +E+ LD       ++  P  V  + ++ ++    D + S F W+++Q
Sbjct: 68  VSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQ 127

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
             Y    ECYV L DVL  ++D D +  +  E+        +S   A N +I+   K   
Sbjct: 128 KKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVS---AANALIKSFGKLGM 184

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           +E     ++K+ ++  +    +YN LM   ++      A  ++E ME G    D  TY  
Sbjct: 185 VEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNT 244

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           MI    K+G+   A++  ++M+ R        + +++ +        + + +Y EM   G
Sbjct: 245 MIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKG 304

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
            +     +  +I    K GKL+    +++ M   G +PN  ++T++I+ +AKSG ++ A+
Sbjct: 305 IQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAI 364

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +   M   GF P   TYS ++     +G+V+ A+  +++    GL      Y++L+  L
Sbjct: 365 RLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGL 424

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFM 540
            K   VD A ++  EM   G + D    + L+  + K   VD A+   + M
Sbjct: 425 GKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRM 475



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 150/307 (48%), Gaps = 6/307 (1%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           ++   ++++++     +G   + + ++E+M +     + + Y ++I   AKSG ++ AI+
Sbjct: 306 QVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIR 365

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           L   M +  F+P    ++ +V+ + K GR++ ++  +   +  G   ++  Y SLI+   
Sbjct: 366 LLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLG 425

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA-GFLPTP 445
           KAG++D A RL++EM   G   +   +  +I++  K  K+D A+++F  ME   G   T 
Sbjct: 426 KAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTV 485

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ LL       + + A+KL++ M   G+ P  + + AL T L     V  A KIL E
Sbjct: 486 YTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDE 545

Query: 506 MKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
           +  MG  +D +  D++    K G +  A +      + GI      V     + M NAL 
Sbjct: 546 LAPMGVILDAACEDMINTLCKAGRIKEACKL-----ADGITERGREVPGRIRTVMINALR 600

Query: 566 ESAKPLL 572
           +  K  L
Sbjct: 601 KVGKADL 607



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 164/365 (44%), Gaps = 11/365 (3%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE 209
           ++ET+  +   +  M  I QA    +D  + ++L++    +   VP     +++  +  E
Sbjct: 264 DMETRGHEADKITYMTMI-QACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKE 322

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            +  +G  ++F+ M+   SK  +++   Y  +I   AK+  +E +     +++D   K D
Sbjct: 323 GKLNEG-YTVFENMIRKGSKPNVAI---YTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPD 378

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             +Y+V++      G   +A + + +      +++   Y  +I  L K+GR+D A +LF+
Sbjct: 379 VVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFE 438

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ---GCGHRPSAPMYVSLIESYA 386
           EM E+        + +L+D+  K  ++D ++ ++  M+   GC    +   Y  L+    
Sbjct: 439 EMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQ--TVYTYTILLSGMF 496

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K  + + AL+LWD M   G  P    F  +      SGK+  A  I  ++   G +   +
Sbjct: 497 KEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILDAA 556

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
               ++     +G++  A KL + +T  G        T ++  L K    D+A K++   
Sbjct: 557 CED-MINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKLMHSK 615

Query: 507 KTMGY 511
             +GY
Sbjct: 616 IGIGY 620



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 165/413 (39%), Gaps = 24/413 (5%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  ++  LA +  +D    +  E+K+  F  + +   +L+ S GK G ++  + V+ +M+
Sbjct: 137 YVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMK 196

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P+   Y  L+     A  +D+A R+++ M     +P+   +  +I+ + K+G+  
Sbjct: 197 ENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQ 256

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            AM    DME  G      TY  +++   +     S + LY  M   G++     ++ ++
Sbjct: 257 KAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVI 316

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR 546
             L K   ++    +   M   G   +V+   VL+  Y K GSV+ A+R L  M   G +
Sbjct: 317 GGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK 376

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            +      +     KN   E A     T       ++ + Y+S++  L +         L
Sbjct: 377 PDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERL 436

Query: 607 MAILSATKHKAHAF----LCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAAR--YFVN 660
              +S       ++    L   FT   +  + +  F R        E EEG  +  Y   
Sbjct: 437 FEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKR-------MEEEEGCDQTVYTYT 489

Query: 661 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
           +LL+ +    +   A  +W +  +  + P A  F          R LS G  L
Sbjct: 490 ILLSGMFKEHRNEEALKLWDMMIDKGITPTAACF----------RALSTGLCL 532


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 167/353 (47%), Gaps = 1/353 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           + N +I  L + + +  +     K+     + D  ++N L+     +G   +A  ++  M
Sbjct: 129 SLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEM 188

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D  +Y  +I  L KSG    A++L ++M+E+  +P+   + +++DS+ K   +
Sbjct: 189 VRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLV 248

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +M +  EM   G  P    Y +++  +   G L+ A  L++EM      PN   FT++
Sbjct: 249 NDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTIL 308

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K G +  A  +F  M + G  P   TY+ L++ +  + Q+D A K+ + M   G 
Sbjct: 309 VDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGC 368

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P + +Y  L+    KR+ +D A  +L+EM     + D V+ S ++    + G    AL 
Sbjct: 369 APVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALN 428

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
             + M SSG+  +      L +   K+   + A  LL++  ES  + D+VLY 
Sbjct: 429 LFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYN 481



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 167/373 (44%), Gaps = 14/373 (3%)

Query: 204 FDVLNESRDFDG----MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           F+ L   R  +G     + LF+EMV    +  +    +Y+ VI  L K+    M+    +
Sbjct: 165 FNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVI---SYSTVINGLCKSGNTSMALQLLR 221

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+ +  CK +  +Y  ++       L   A ++   M       D  TY  ++      G
Sbjct: 222 KMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLG 281

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            L+ A  LF EM  RN  P+   F  LVD + K G +  +  V+  M   G  P+A  Y 
Sbjct: 282 HLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYN 341

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +L++ Y    ++D A ++ D M   G  P    + ++I  + K  +LD A S+  +M   
Sbjct: 342 ALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEK 401

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
              P   TYS L++     G+   A+ L+  M S+GL P L TY+ LL  L K   +D A
Sbjct: 402 ELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEA 461

Query: 500 AKILLEMKTMGYSVDVSASDVLM--VYIKDGSVDHALRWLRFMGSSG----IRTNNFIVR 553
            K+L  M+      D+   ++L+  ++I  G ++ A      + + G    IRT   +++
Sbjct: 462 LKLLKSMQESKIEPDIVLYNILIEGMFIA-GKLEVAKELFSKLFADGIQPTIRTYTIMIK 520

Query: 554 QLFESCMKNALYE 566
            L +  + +  YE
Sbjct: 521 GLLKEGLSDEAYE 533



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 3/304 (0%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           LF+EMV    +N +     +  ++  L K   +  + C F+ +     + +  +YN LM 
Sbjct: 289 LFNEMV---GRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMD 345

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +       +A ++ + M    C+    +Y ++I    K  RLD A  L  EM E+   P
Sbjct: 346 GYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTP 405

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               +++L+  + + GR   ++ ++ EM   G  P    Y +L++   K G LD AL+L 
Sbjct: 406 DTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLL 465

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M+ +   P+  L+ ++IE    +GKL++A  +F+ +   G  PT  TY+ +++     
Sbjct: 466 KSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKE 525

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G  D A +L+  M   G  P   +Y  ++    + +    A +++ EM    +S D S  
Sbjct: 526 GLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTF 585

Query: 519 DVLM 522
            +L+
Sbjct: 586 QMLL 589



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 124/260 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++      ++++ +      ++D  C     SYN+L+  +  +    +A  +   M
Sbjct: 339 TYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEM 398

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            + E + D  TY  ++  L + GR   A+ LF+EM      P    +++L+D + K G L
Sbjct: 399 SEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHL 458

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++K+   MQ     P   +Y  LIE    AGKL+ A  L+ ++   G +P    +T++
Sbjct: 459 DEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIM 518

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K G  D A  +F  ME  GFLP   +Y+ +++    +    +A++L + M     
Sbjct: 519 IKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRF 578

Query: 477 RPGLSTYTALLTLLAKRKLV 496
               ST+  LL L ++ +++
Sbjct: 579 SADSSTFQMLLDLESRDEII 598



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/366 (20%), Positives = 169/366 (46%), Gaps = 5/366 (1%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           ++  +L L R  + +    P    Y  + D L +    +  + L  EMV       +   
Sbjct: 212 NTSMALQLLRKMEEKGCK-PNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVV-- 268

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
             Y+ ++        L  +   F +++  +   +T ++ +L+     +G+  +A  ++E+
Sbjct: 269 -TYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEA 327

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M K     +  TY  ++     + ++D A K+   M ++   P  + +  L++   K  R
Sbjct: 328 MTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRR 387

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           LD +  + +EM      P    Y +L++   + G+   AL L+ EM  +G  P+   ++ 
Sbjct: 388 LDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYST 447

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++   K G LD A+ +   M+ +   P    Y+ L+E    +G+++ A +L++ + + G
Sbjct: 448 LLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADG 507

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHAL 534
           ++P + TYT ++  L K  L D A ++  +M+  G+  +  + +V++  ++++     A+
Sbjct: 508 IQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAI 567

Query: 535 RWLRFM 540
           R +  M
Sbjct: 568 RLIDEM 573



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 112/272 (41%), Gaps = 1/272 (0%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +D A+  F  M   N RPS   F   + S+ K  +  T + +  +M   G   +      
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNI 132

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI    +   +  A+ +  +M   G +P+   F  +I      G++  A+ +F +M R G
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRG 192

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   +YS ++     SG    A++L   M   G +P L  YT ++  L K  LV+ A 
Sbjct: 193 HQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAM 252

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +L EM   G   D V+ S +L  +   G ++ A      M    +  N      L +  
Sbjct: 253 DLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGL 312

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            K  +   A+ + E   +  A+ +   Y +++
Sbjct: 313 CKEGMVSEARCVFEAMTKKGAEPNAYTYNALM 344


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 137/607 (22%), Positives = 254/607 (41%), Gaps = 66/607 (10%)

Query: 112  VEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQAL 171
            VE  + + + +G +    +N S  A+ +    ++    ++  ++    FVP     ++ +
Sbjct: 409  VEKAYSEMLDLGVVLNK-VNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVI 467

Query: 172  KVINDS---DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS 228
              + D+   + + SLF   KR    VP    Y +L D   ++         FDEM+H   
Sbjct: 468  GFLCDASKVEKAFSLFEEMKRNG-IVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGC 526

Query: 229  KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
               +  ++A   +I    KA ++ ++   F+ +L   CK +  +Y  L+      G   K
Sbjct: 527  TPNVVTYTA---LIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEK 583

Query: 289  AFEIYESMEKGECSLDGS----------------TYELMIPSLAKSGRLDAAIKLFQEMK 332
            A +IY  M     S D                  TY  ++  L K+ R+  A +L   M 
Sbjct: 584  ACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTML 643

Query: 333  ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                 P+  ++ +++D   K G+L  + +V+ +M   G+ P+   Y S I+   K  +LD
Sbjct: 644  AHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLD 703

Query: 393  TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
              L++  +M      PN  ++T +++   K GK D A  +   ME  G  P   TY+ ++
Sbjct: 704  LVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMI 763

Query: 453  EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK----- 507
            +    SG+++  ++L+  M S G  P   TY  L+       L+D A K+L EMK     
Sbjct: 764  DGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWP 823

Query: 508  -------------------TMGYSVDVSASDVLMV----------YIKDGSVDHALRWLR 538
                               ++G   ++S ++ + V          YIK G ++ AL  L 
Sbjct: 824  KHILSHRKIIEGFSQEFITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLE 883

Query: 539  FMGSSGIR--TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             + SS     +N ++   L E+    +  + A   LE Y    +K ++V   S+L HL++
Sbjct: 884  EISSSPSHAVSNKYLYASLIENLSHASKVDKA---LELYASMISK-NVVPELSILVHLIK 939

Query: 597  --CQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGA 654
               + ++ +  L    S  +   H          E+  + V++ + E   G+  E+ E  
Sbjct: 940  GLIKVDKWQEALQLSDSICQMDIHWLQEKATGRTEEMVKLVIAAMVEAETGVSEEILERC 999

Query: 655  ARYFVNV 661
            + Y +NV
Sbjct: 1000 SSYSINV 1006



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 170/384 (44%), Gaps = 27/384 (7%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEIYESM 296
           +N +I    K+     +Y  FKK++   C+     YN+ + ++  N+  P  + +I + +
Sbjct: 352 FNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQP--SSDILDLV 409

Query: 297 EKGECS-------LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
           EK           L+          L  +G+ D A K+  EM  + F P  + ++ ++  
Sbjct: 410 EKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGF 469

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           +  A +++ +  ++ EM+  G  PS   Y  LI+S+ KAG +  A + +DEM   G  PN
Sbjct: 470 LCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPN 529

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              +T +I ++ K+ ++ +A  +F  M   G  P   TY+ L++ H  +GQ++ A ++Y 
Sbjct: 530 VVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYA 589

Query: 470 SM----TSAGLR------------PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            M     S+ +             P + TY AL+  L K   V  A ++L  M   G   
Sbjct: 590 RMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEP 649

Query: 514 DVSASD-VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           +    D V+  + K G +  A      M   G   N +      +   K+   +    +L
Sbjct: 650 NQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVL 709

Query: 573 ETYVESAAKVDLVLYTSVLAHLVR 596
              +E++   ++V+YT ++  L +
Sbjct: 710 SKMLENSCTPNVVIYTEMVDGLCK 733



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 151/339 (44%), Gaps = 25/339 (7%)

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263
           FD+++E+ DF          V D+      +F  YNR++  L +A   E +     ++  
Sbjct: 266 FDLIDEAEDF----------VPDT------VF--YNRMVSGLCEASLFEEAMDILHRMRS 307

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
           S C  +  +Y +L++  L KG   +   I   M    C  +   +  +I +  KS     
Sbjct: 308 SSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSY 367

Query: 324 AIKLFQEMKERNFRPS---FNIFASLV---DSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           A KLF++M +   +P    +NIF   V   +    +  LD   K Y EM   G   +   
Sbjct: 368 AYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVN 427

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
             +       AGK D A ++  EM   GF P+   ++ +I     + K++ A S+F +M+
Sbjct: 428 VSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMK 487

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           R G +P+  TY+ L++    +G +  A K ++ M   G  P + TYTAL+    K K + 
Sbjct: 488 RNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMP 547

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           VA ++   M   G   +V     L+  + K G ++ A +
Sbjct: 548 VADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQ 586



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 105/489 (21%), Positives = 193/489 (39%), Gaps = 45/489 (9%)

Query: 146 KWGPELETQLDKLQFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVML 203
           K G  +ET     QF  ++    + + +  + + +  +  F WA RQ  Y    + +  L
Sbjct: 86  KTGFNIETHQFFRQFRNQLNDSLVVEVMNNVKNPELCVKFFLWAGRQIGYSHTPQVFDKL 145

Query: 204 FDVLN---------------ESRDFDGML--SLFDEMVHDSSKNG-----------ISLF 235
            D+L                E +D D  L   L + +V    +NG           +  F
Sbjct: 146 LDLLGCNVNADDRVPLKFLMEIKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGRLKDF 205

Query: 236 ------SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
                 + YN +IQ   +ADKL+ +Y   +++L     +D  + +         G   +A
Sbjct: 206 GYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREA 265

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
           F++ +  E  +   D   Y  M+  L ++   + A+ +   M+  +  P+   +  L+  
Sbjct: 266 FDLIDEAE--DFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSG 323

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
             + G+L    ++   M   G  P+  ++ SLI +Y K+     A +L+ +M   G +P 
Sbjct: 324 CLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPG 383

Query: 410 FGLFTMII------ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
           + ++ + I      E    S  LD+    +++M   G +      S        +G+ D 
Sbjct: 384 YLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQ 443

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM- 522
           A K+   M   G  P  STY+ ++  L     V+ A  +  EMK  G    V    +L+ 
Sbjct: 444 AFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILID 503

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            + K G +  A +W   M   G   N      L  + +K      A  L E  +    K 
Sbjct: 504 SFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKP 563

Query: 583 DLVLYTSVL 591
           ++V YT+++
Sbjct: 564 NVVTYTALI 572



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 112/276 (40%), Gaps = 5/276 (1%)

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
           +K   E+K+ +      +   LV    + G  + +++    ++  G++PS   Y +LI+ 
Sbjct: 161 LKFLMEIKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQV 220

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           + +A KLDTA  +  EM    F  +    +    S  K GK   A  +  + E   F+P 
Sbjct: 221 FLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAE--DFVPD 278

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
              Y+ ++     +   + AM + + M S+   P + TY  LL+   ++  +    +IL 
Sbjct: 279 TVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILS 338

Query: 505 EMKTMG-YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
            M T G Y      + ++  Y K     +A +  + M   G +    +      S   N 
Sbjct: 339 MMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNE 398

Query: 564 LYESAK--PLLETYVESAAKVDLVLYTSVLAHLVRC 597
              S+    L+E        + +VL    +++  RC
Sbjct: 399 EQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARC 434


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE
            1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 125/554 (22%), Positives = 239/554 (43%), Gaps = 47/554 (8%)

Query: 269  DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
            D +++N LM+ +   G   +A  I+ +M +   S    +  +++ +L   GRL+    + 
Sbjct: 786  DLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVV 845

Query: 329  QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +E+++  F+ S +    ++D+  +AG +    K+Y  M+  G+ P+  +Y  +IE   K 
Sbjct: 846  EELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKG 905

Query: 389  GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
             ++  A  +  EM  A F+    ++  +++ +         + ++  ++  G  P  +TY
Sbjct: 906  KRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTY 965

Query: 449  SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
            + L+ M+    + +    L   M + GL P L TY +L++   K+K ++ A ++  E+ +
Sbjct: 966  NTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLS 1025

Query: 509  MGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
             G  +D S    +M   +D GS   A + L+ M ++GI      +  L  S   +   + 
Sbjct: 1026 KGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQE 1085

Query: 568  AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD----------------EQNER------- 604
            A+ +L    ++  ++  + Y+SV+   +R +D                E + R       
Sbjct: 1086 AEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVR 1145

Query: 605  ---------HLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
                      +M +L A +         L  G   R + ++S V  +F  +   +E+ AA
Sbjct: 1146 AASFSKEKIEVMLLLKALEDIGFDLPIRLLAG---RPELLVSEVDGWFEKLK-SIEDNAA 1201

Query: 656  RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
              FVN LLN L        A  V+++  +  +F   +       W  D R LS GAAL+A
Sbjct: 1202 LNFVNALLNLLWAFELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVA 1261

Query: 716  VMHTLHRFRKRMLY-YGVVPRRIKLVTGP------TLKIVIAQMLSSVESPFEVSKV--- 765
            +   L   +   L  Y   P+ + L+TG       +L   +   L  + SPF   K    
Sbjct: 1262 LTLWLDHMQDASLEGYPESPKSVVLITGTAEYNGISLDKTLKACLWEMGSPFLPCKTRTG 1321

Query: 766  VLRAPGDSVMEWFK 779
            +L A   S+  W K
Sbjct: 1322 LLVAKAHSLRMWLK 1335



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 205/463 (44%), Gaps = 25/463 (5%)

Query: 131 NASAVAKIVEVVNRWKW---GPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRW- 186
           NA  VA I+ V+ RW       E+ T+ +    V   V +  A+  +       S  +  
Sbjct: 190 NARMVAAILGVLGRWNQESLAVEIFTRAEPT--VGDRVQVYNAMMGVYSRSGKFSKAQEL 247

Query: 187 --AKRQSWYVPGDECYVMLFDVLNESRDFDGMLS------LFDEMVHDSSKNGISLFSAY 238
             A RQ   VP     ++ F+ L  +R   G L+      L D MV +S     ++   Y
Sbjct: 248 VDAMRQRGCVPD----LISFNTLINARLKSGGLTPNLAVELLD-MVRNSGLRPDAI--TY 300

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++   ++   L+ +   F+ +    C+ D  +YN +++++   GL  +A  ++  +E 
Sbjct: 301 NTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELEL 360

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY  ++ + A+    +   +++Q+M++  F      + +++   GK G+LD 
Sbjct: 361 KGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDL 420

Query: 359 SMKVYMEMQG-CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           ++++Y +M+G  G  P A  Y  LI+S  KA +   A  L  EM   G +P    ++ +I
Sbjct: 421 ALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALI 480

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             +AK+GK + A   F+ M R+G  P    YS +L++     +   A  LY  M S G  
Sbjct: 481 CGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHT 540

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537
           P  + Y  ++  L K    D   K + +M+ +     +  S VL   +K    D A R L
Sbjct: 541 PSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVL---VKGECFDLAARQL 597

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +   ++G    N  +  +  S   +  +  A  LLE   E A+
Sbjct: 598 KVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHAS 640



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 160/369 (43%), Gaps = 8/369 (2%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L +F W   + W+ P       +  VL          SL  E+   +          YN
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRW----NQESLAVEIFTRAEPTVGDRVQVYN 229

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG--LPYKAFEIYESME 297
            ++   +++ K   +      +    C  D  S+N L+   L  G   P  A E+ + + 
Sbjct: 230 AMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVR 289

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  TY  ++ + ++   LD A+K+F++M+    +P    + +++   G+ G   
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAA 349

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + +++ME++  G  P A  Y SL+ ++A+    +    ++ +M+  GF  +   +  II
Sbjct: 350 EAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTII 409

Query: 418 ESHAKSGKLDIAMSIFTDMER-AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
             + K G+LD+A+ ++ DM+  +G  P   TY+ L++    + +   A  L + M   G+
Sbjct: 410 HMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGI 469

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P L TY+AL+   AK    + A      M   G   D  A  V++ V ++      A  
Sbjct: 470 KPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWG 529

Query: 536 WLRFMGSSG 544
             R M S G
Sbjct: 530 LYRDMISDG 538



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 108/230 (46%), Gaps = 1/230 (0%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN-IFASL 346
           +A +++  +    C    S  + M+    K G  + A ++  + + + F  + + ++  +
Sbjct: 699 EASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDI 758

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +++ GK      +  V   ++  G  P    + SL+ +YA+ G  + A  +++ M   G 
Sbjct: 759 IEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGP 818

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P      +++ +    G+L+    +  +++  GF  + S+   +L+  A +G +    K
Sbjct: 819 SPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKK 878

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           +Y+SM +AG  P +  Y  ++ LL K K V  A  ++ EM+   + V+++
Sbjct: 879 IYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELA 928



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 106/531 (19%), Positives = 199/531 (37%), Gaps = 116/531 (21%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L L++  K  S   P    Y +L D L ++       +L  EM+    K  +  +SA
Sbjct: 419 DLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSA 478

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES-- 295
              +I   AKA K E +   F  +L S  K D  +Y+V++ + L      KA+ +Y    
Sbjct: 479 ---LICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMI 535

Query: 296 ---------------------------------ME---------------KGEC------ 301
                                            ME               KGEC      
Sbjct: 536 SDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAAR 595

Query: 302 ----------SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
                      L+  T   ++ S + SGR   A +L + +KE        I  +L+    
Sbjct: 596 QLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHC 655

Query: 352 KAGRLDTSM-------------------------------------KVYMEMQGCGHRPS 374
           K   L  ++                                     +V+ +++  G   S
Sbjct: 656 KVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEAS 715

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG---LFTMIIESHAKSGKLDIAMS 431
             +  S++  Y K G  +TA ++ ++    GF  +F    ++T IIE++ K      A S
Sbjct: 716 ESVCKSMVVVYCKLGFPETAHQVVNQAETKGF--HFACSPMYTDIIEAYGKQKLWQKAES 773

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +  ++ ++G  P   T++ L+  +A  G  + A  ++N+M   G  P + +   LL  L 
Sbjct: 774 VVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALC 833

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMV---YIKDGSVDHALRWLRFMGSSGIRTN 548
               ++    ++ E++ MG+   +S S +L++   + + G++    +    M ++G    
Sbjct: 834 VDGRLEELYVVVEELQDMGFK--ISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPT 891

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
             + R + E   K      A+ ++    E+  KV+L ++ S+L      +D
Sbjct: 892 IRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIED 942



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 92/211 (43%), Gaps = 5/211 (2%)

Query: 236  SAYNRVIQYLAKADKLEMSYCCFKKV--LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
            + YN +I    +  + E  Y   +++  L  D K+DT  Y  L++ F  +    +A +++
Sbjct: 963  TTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDT--YKSLISAFGKQKCLEQAEQLF 1020

Query: 294  ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            E +      LD S Y  M+     SG    A KL Q MK     P+      L+ S   +
Sbjct: 1021 EELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSS 1080

Query: 354  GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
            G    + KV   ++      +   Y S+I++Y ++   ++ +    EM+  G  P+  ++
Sbjct: 1081 GNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIW 1140

Query: 414  TMIIESHAKSGKLDIAMSIFTDMERAGF-LP 443
            T  + + + S +    M +   +E  GF LP
Sbjct: 1141 TCFVRAASFSKEKIEVMLLLKALEDIGFDLP 1171


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 186/407 (45%), Gaps = 5/407 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           +D   +   F WA  Q  Y    + Y ++ D+L + + FD +  L  +M  D     +SL
Sbjct: 138 SDWVAAFGFFMWAGAQEGYCHHADLYNLMVDILGKFKQFDLLWGLIRQM--DEIGCLVSL 195

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
            +   +V++ LA A++   +   F K+       DT++ N L+     +    +A  +++
Sbjct: 196 -ATMTKVMRRLAGANRWTDAIDAFNKMDQFGVVRDTKAMNALLDTLCKEKSVKRARGVFQ 254

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            + +G    D S++  ++    ++  L+ A    +EM+E  F PS   + SL+++     
Sbjct: 255 EL-RGVVPPDESSFNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEK 313

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
              T   +  EM   G RP+   Y  ++ +  KAG+   AL ++D+++  G  P+   + 
Sbjct: 314 DFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYN 373

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            II    ++G+L+ A S+F +M R G  PT + ++ ++       Q ++A+K+   M   
Sbjct: 374 SIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQ 433

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
             +P + TYT LL L  KR+ + +   ++  M     S D S   +L+ ++ ++G    +
Sbjct: 434 SCKPDIKTYTPLLKLCCKRQWMKILPFLICHMFRKDISPDFSTYILLVTWLCRNGKPAQS 493

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
             +L  M   G          + E   K  L+ + K +    + +AA
Sbjct: 494 CLFLEEMVLKGFMPKQETFDLVMEKLDKGNLHSAKKKIQHLKLRAAA 540



 Score = 40.0 bits (92), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 41/234 (17%), Positives = 95/234 (40%), Gaps = 3/234 (1%)

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           + + M  C  R S  M   ++  +           +W   +  G+  +  L+ ++++   
Sbjct: 113 IVIAMDCCPVRVSGRMVDKILRRFGSDWVAAFGFFMWAGAQ-EGYCHHADLYNLMVDILG 171

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           K  + D+   +   M+  G L + +T + ++   A + +   A+  +N M   G+     
Sbjct: 172 KFKQFDLLWGLIRQMDEIGCLVSLATMTKVMRRLAGANRWTDAIDAFNKMDQFGVVRDTK 231

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541
              ALL  L K K V  A  +  E++ +    + S + ++  + +   ++ A   ++ M 
Sbjct: 232 AMNALLDTLCKEKSVKRARGVFQELRGVVPPDESSFNTLVHGWCQARMLNEARDTMKEME 291

Query: 542 SSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             G   +      L E+ CM+   +++   +L        + +++ YT V+  L
Sbjct: 292 EHGFSPSVITYTSLIEAYCMEKD-FQTVYAILNEMCSKGCRPNVITYTIVMHAL 344


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 197/446 (44%), Gaps = 8/446 (1%)

Query: 163 KMVHITQALKVINDSDTSLSLFRW-AKRQSWYVPGDECYVMLFDVLNE-SRDFDGMLSLF 220
           ++ +IT   K  ++ D+   +  W A +   Y      Y  + D L +  R F+  L +F
Sbjct: 335 RVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA-LEMF 393

Query: 221 DEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           DEM     K  +    +YN +I    KAD+   +   FK +     K +  ++ + +  +
Sbjct: 394 DEM---KQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYY 450

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   KA + YE M+      D      ++  LAKSGRL  A ++F E+K     P  
Sbjct: 451 GKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDT 510

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             +  ++    KA + D ++K++ +M      P      SLI++  KAG+ D A R++ +
Sbjct: 511 ITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQ 570

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           ++     P  G +  ++    + GK+   M +  +M  + + P   TY+ +L+    +G 
Sbjct: 571 LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGA 630

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           V+ A+ +  SMT+ G  P LS+Y  ++  L K +  + A  I  +MK +      +   +
Sbjct: 631 VNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTI 690

Query: 521 LMVYIKDGSVDHALRWLR-FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           L  ++K G +  AL  ++ +    G +T+      L E  +K A  E +    E    S 
Sbjct: 691 LPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSG 750

Query: 580 AKVDLVLYTSVLAHLVRCQDEQNERH 605
             +D      ++ HL + Q +  E H
Sbjct: 751 ITLDDFFLCPLIKHLCK-QKKALEAH 775



 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 180/404 (44%), Gaps = 4/404 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y +L     + RD + +L L  EM     K  +    +Y   I+ L +A + + 
Sbjct: 227 VPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVY---SYTICIRVLGQAKRFDE 283

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y    K+ +  CK D  ++ VL+ +  + G    A +++  M+K +   D  TY  ++ 
Sbjct: 284 AYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLD 343

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
               +G   + ++++  MK   +  +   + +++D++ + GR+  +++++ EM+  G  P
Sbjct: 344 KFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVP 403

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y SLI  + KA +   AL L+  M I G +PN     + I  + KSG+   A+  +
Sbjct: 404 EQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRY 463

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M+  G +P     + +L   A SG++  A ++++ + + G+ P   TYT ++   +K 
Sbjct: 464 ELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKA 523

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
              D A KI  +M       DV A + L+    K G  D A R    +    +   +   
Sbjct: 524 SKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTY 583

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L     +    +    LLE    S    +L+ Y ++L  L +
Sbjct: 584 NTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCK 627



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/563 (19%), Positives = 223/563 (39%), Gaps = 53/563 (9%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSL 183
           G+  P L+ S  +K    + R +  P      D+ +    ++H   AL+  +    +L  
Sbjct: 57  GVSSPGLSPSRPSK--RRIGRARVQPRAPPPCDERRAAEDVIH---ALRSADGPAEALER 111

Query: 184 FRWAKRQSWYV-PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
           FR A R+         C  ML  +    R  D M  +FD M     K  +  F+A   + 
Sbjct: 112 FRSAARKPRVAHTTASCNYMLELMRGHGRVGD-MAEVFDVMQRQIVKANVGTFAA---IF 167

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY--------- 293
             L     L  +      + ++   ++  +YN L+   +  G   +A E+Y         
Sbjct: 168 GGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVV 227

Query: 294 --------------------------ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
                                       ME      +  +Y + I  L ++ R D A ++
Sbjct: 228 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRI 287

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             +M+    +P       L+  +  AGR+  +  V+ +M+    +P    Y++L++ +  
Sbjct: 288 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 347

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            G   + + +W+ M+  G+  N   +T +I++  + G++  A+ +F +M++ G +P   +
Sbjct: 348 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYS 407

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+     + +   A++L+  M   G +P   T+   +    K      A +    MK
Sbjct: 408 YNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMK 467

Query: 508 TMGYSVDVSASD-VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
           + G   DV A + VL    K G +  A R    + + G+  +      + + C K + ++
Sbjct: 468 SKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFD 527

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVRC-QDEQNERHLMAI----LSATKHKAHAFL 621
            A  +    +E+    D++   S++  L +  + ++  R    +    L  T    +  L
Sbjct: 528 EAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLL 587

Query: 622 CGLFTGPEQRKQPVLSFVREFFH 644
            GL  G E + + V+  + E +H
Sbjct: 588 AGL--GREGKVKEVMHLLEEMYH 608



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 288 KAFEIYESMEKGE---CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           KA E +E ++K +    SL    Y  +I  L     +D A  LF EMKE    P    + 
Sbjct: 770 KALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYN 829

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
            L+D+MGK+ R++  +KV  EM   G+  +   Y ++I    K+ +L+ A+ L+  +   
Sbjct: 830 LLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQ 889

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           GF P    +  +++   K+G+++ A ++F +M   G     + Y+ LL  H  +G  +  
Sbjct: 890 GFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKV 949

Query: 465 MKLYNSMTSAGLRPGLSTYTALL 487
             L+  M   G+ P + +YT ++
Sbjct: 950 CHLFQDMVDQGINPDIKSYTIII 972



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 109/213 (51%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I++L K  K   ++   KK       + T  YN L+   +++ L   A  ++  M++  
Sbjct: 761 LIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG 820

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           C  D  TY L++ ++ KS R++  +K+ +EM  + +  ++  + +++  + K+ RL+ ++
Sbjct: 821 CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 880

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            +Y  +   G  P+   Y  L++   KAG+++ A  L++EM   G + N  ++ +++  H
Sbjct: 881 DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 940

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
             +G  +    +F DM   G  P   +Y+ +++
Sbjct: 941 RIAGNTEKVCHLFQDMVDQGINPDIKSYTIIID 973



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 149/368 (40%), Gaps = 38/368 (10%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
            S Y P    Y  + D L ++   +  L +   M   ++K  I   S+YN VI  L K +
Sbjct: 608 HSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM---TTKGCIPDLSSYNTVIYGLVKEE 664

Query: 250 KLEMSY---CCFKKVLDSD--------------------------------CKIDTQSYN 274
           +   ++   C  KKVL  D                                 K D  S +
Sbjct: 665 RYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCH 724

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            LM   L K    K+ E  E +     +LD      +I  L K  +   A +L ++ K  
Sbjct: 725 SLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSF 784

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
                  ++ SL+  +     +D +  ++ EM+  G  P    Y  L+++  K+ +++  
Sbjct: 785 GVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEM 844

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           L++ +EM   G+   +  +  II    KS +L+ A+ ++ ++   GF PTP TY  LL+ 
Sbjct: 845 LKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDG 904

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +G+++ A  L+N M   G +   + Y  LL         +    +  +M   G + D
Sbjct: 905 LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 964

Query: 515 VSASDVLM 522
           + +  +++
Sbjct: 965 IKSYTIII 972



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 1/198 (0%)

Query: 222 EMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           E+V      G+SL +  YN +I  L   + ++++   F ++ +  C  D  +YN+L+   
Sbjct: 776 ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 835

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
                  +  ++ E M +        TY  +I  L KS RL+ AI L+  +  + F P+ 
Sbjct: 836 GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 895

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             +  L+D + KAGR++ +  ++ EM   G + +  +Y  L+  +  AG  +    L+ +
Sbjct: 896 CTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQD 955

Query: 401 MRIAGFRPNFGLFTMIIE 418
           M   G  P+   +T+II+
Sbjct: 956 MVDQGINPDIKSYTIIID 973



 Score = 48.5 bits (114), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 3/154 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y +L D + +S   + ML + +EM     K   S +  YN +I  L K+ +LE +
Sbjct: 823 PDEFTYNLLLDAMGKSMRIEEMLKVQEEM---HRKGYESTYVTYNTIISGLVKSRRLEQA 879

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              +  ++         +Y  L+   L  G    A  ++  M +  C  + + Y +++  
Sbjct: 880 IDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG 939

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
              +G  +    LFQ+M ++   P    +  ++D
Sbjct: 940 HRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIID 973


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 183/394 (46%), Gaps = 20/394 (5%)

Query: 210 SRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
            ++ + ML L D+MV +    N ++    Y  V+  + K+ +  ++    +K+ + + K+
Sbjct: 305 GKEAEAML-LIDKMVEYGCQPNAVT----YGPVLNVMCKSGQTALAMELLRKMEERNIKL 359

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   Y++++      G    AF ++  ME    + +  TY ++I     +GR D   KL 
Sbjct: 360 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 419

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           ++M +R   P+   F+ L+DS  K G+L  + +++ EM   G  P    Y SLI+ + K 
Sbjct: 420 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 479

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
             LD A ++ D M   G  PN   F ++I  + K+ ++D  + +F  M   G +    TY
Sbjct: 480 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTY 539

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++     G+++ A +L+  M S  + P + TY  LL  L      + A +I  +++ 
Sbjct: 540 NTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 599

Query: 509 MGYSVDVSASDVLMVYIKDGS-VDHALRWLRFMG------SSGIRTNNFIVRQLFESCMK 561
               +D+   ++++  + + S VD A  W  F          G++T N ++  L   C K
Sbjct: 600 SKMELDIGIYNIIIHGMCNASKVDDA--WDLFCSLPLKGVKPGVKTYNIMIGGL---CKK 654

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVL-AHL 594
             L E A+ L     E     D   Y  ++ AHL
Sbjct: 655 GPLSE-AELLFRKMEEDGHAPDGWTYNILIRAHL 687



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/431 (22%), Positives = 192/431 (44%), Gaps = 7/431 (1%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           +D ++ LFR     S  +P    +  LF  + +++ +D +L+L  +M      + +   S
Sbjct: 167 ADDAIDLFR-DMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 225

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
               +I    +  KL +++    K++    + +T +++ L+     +G   +A E+ + M
Sbjct: 226 I---MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 282

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D  T   ++  L  SG+   A+ L  +M E   +P+   +  +++ M K+G+ 
Sbjct: 283 VEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 342

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +M++  +M+    +  A  Y  +I+   K G LD A  L++EM + G   N   + ++
Sbjct: 343 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNIL 402

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I     +G+ D    +  DM +    P   T+S L++     G++  A +L+  M   G+
Sbjct: 403 IGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 462

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P   TYT+L+    K   +D A +++  M + G   ++   ++L+  Y K   +D  L 
Sbjct: 463 APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLE 522

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             R M   G+  +      L +   +      AK L +  V      ++V Y  +L  L 
Sbjct: 523 LFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL- 581

Query: 596 RCQDEQNERHL 606
            C + ++E+ L
Sbjct: 582 -CDNGESEKAL 591



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 166/359 (46%), Gaps = 4/359 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D L +    D   +LF+EM     K   +    YN +I     A + +      +
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEM---EMKGITTNIITYNILIGGFCNAGRWDDGAKLLR 420

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++      +  +++VL+  F+ +G   +A E+++ M     + D  TY  +I    K  
Sbjct: 421 DMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKEN 480

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            LD A ++   M  +   P+   F  L++   KA R+D  ++++ +M   G       Y 
Sbjct: 481 HLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYN 540

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI+ + + GKL+ A  L+ EM      PN   + ++++    +G+ + A+ IF  +E++
Sbjct: 541 TLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKS 600

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
                   Y+ ++    ++ +VD A  L+ S+   G++PG+ TY  ++  L K+  +  A
Sbjct: 601 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 660

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
             +  +M+  G++ D    ++L+  ++ DG    +++ +  +   G   +   ++ + +
Sbjct: 661 ELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 719



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 1/295 (0%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFK 259
           V+ F VL +S   +G L   +E+  +    GI+  +  Y  +I    K + L+ +     
Sbjct: 431 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 490

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++   C  + +++N+L+  +          E++  M       D  TY  +I    + G
Sbjct: 491 LMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 550

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +L+ A +LFQEM  R   P+   +  L+D +   G  + +++++ +++         +Y 
Sbjct: 551 KLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYN 610

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            +I     A K+D A  L+  + + G +P    + ++I    K G L  A  +F  ME  
Sbjct: 611 IIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEED 670

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           G  P   TY+ L+  H   G    ++KL   +   G     ST   ++ +L+  K
Sbjct: 671 GHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDDK 725



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 114/300 (38%), Gaps = 41/300 (13%)

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +RN      + + LVD      + D ++ ++ +M      P+   +  L  + AK  + D
Sbjct: 149 DRNLSYRERLRSGLVDI-----KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYD 203

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             L L  +M + G   N    +++I    +  KL +A S    + + G+ P   T+S L+
Sbjct: 204 LVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLI 263

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGL-------------------------------- 480
                 G+V  A++L + M   G +P L                                
Sbjct: 264 NGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQ 323

Query: 481 ---STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
               TY  +L ++ K     +A ++L +M+     +D V  S ++    K GS+D+A   
Sbjct: 324 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 383

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              M   GI TN      L         ++    LL   ++     ++V ++ ++   V+
Sbjct: 384 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 443


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 156/340 (45%), Gaps = 13/340 (3%)

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
           G+ L  +Y  +I  L K  +   +    ++V     + +   YN ++       L  +AF
Sbjct: 139 GLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAF 198

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           ++Y  M     S D  TY  +I      G+L  AI LF +M   N +P    F  LVD  
Sbjct: 199 DLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGF 258

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K G++     V+  M   G +P+   Y SL++ Y    +++ A  +++ M   G  P+ 
Sbjct: 259 CKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDT 318

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             + ++I    K  K+D AM++F  M     +P   TY+ L++    SG++  A+KL + 
Sbjct: 319 QSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDE 378

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM--------GYSVDVSASDVLM 522
           M   G+ P + TY+++L  L K   VD A  +L ++K          GY++DV A  V++
Sbjct: 379 MHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMI 438

Query: 523 V-YIKDGSVDHALRWLRFMGSSG----IRTNNFIVRQLFE 557
             +   G  + AL  L  M  +G     +T   I+  LF+
Sbjct: 439 QGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFK 478



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 140/315 (44%), Gaps = 41/315 (13%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           +Y  +I  L K G+  AA++L + +  +  +P+  ++ +++DSM K   ++ +  +Y EM
Sbjct: 145 SYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 204

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G  P    Y +LI  +   GKL  A+ L+++M +   +P+   F ++++   K GK+
Sbjct: 205 VSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKM 264

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
               ++F  M + G  P   TY  L++ +    QV+ A  ++N+M   G+ P   +Y  +
Sbjct: 265 KEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIM 324

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           +    K K VD A  +  +M       +V + + ++    K G + +AL+ +  M   G+
Sbjct: 325 INGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGV 384

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
                                                D++ Y+S+L  L  C++ Q ++ 
Sbjct: 385 PP-----------------------------------DIITYSSILDAL--CKNHQVDK- 406

Query: 606 LMAILSATKHKAHAF 620
             AI   TK K   F
Sbjct: 407 --AIALLTKLKDQVF 419



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 144/324 (44%), Gaps = 11/324 (3%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  + D + + +  +    L+ EMV +     +  +SA   +I       KL+ +
Sbjct: 176 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSA---LISGFFIVGKLKDA 232

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F K++  + K D  ++N+L+  F   G   +   ++  M K     +  TY  ++  
Sbjct: 233 IDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDG 292

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
                +++ A  +F  M +    P    +  +++   K  ++D +M ++ +M      P+
Sbjct: 293 YCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPN 352

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS--- 431
              Y SLI+   K+GK+  AL+L DEM   G  P+   ++ I+++  K+ ++D A++   
Sbjct: 353 VVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLT 412

Query: 432 -----IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
                +F D+   G+      Y+ +++     G  + A+ L + M   G  P   TY  +
Sbjct: 413 KLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEII 472

Query: 487 LTLLAKRKLVDVAAKILLEMKTMG 510
           +  L K+   D+A K+L EM   G
Sbjct: 473 ILSLFKKDENDMAEKLLREMIARG 496



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 16/236 (6%)

Query: 372 RPSAPMYV--SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
            P+ P++    ++ S  K     TA+ L  +M + G   N     ++I   ++ G+  ++
Sbjct: 55  NPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLS 114

Query: 430 MSIFTDMERAGFLPTPST-------------YSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
            S+F ++ + G+ P   T             Y  L+      GQ  +A++L   +    +
Sbjct: 115 FSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLV 174

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALR 535
           +P +  Y  ++  + K KLV+ A  +  EM + G S DV     L+  +   G +  A+ 
Sbjct: 175 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAID 234

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               M    I+ + +    L +   K+   +  K +    ++   K ++V Y S++
Sbjct: 235 LFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLM 290



 Score = 47.0 bits (110), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 14/170 (8%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           I   D +++LF+    ++  +P    Y  L D L +S      L L DEM HD    G+ 
Sbjct: 331 IKKVDEAMNLFKKMHCKNI-IPNVVTYTSLIDGLCKSGKISYALKLVDEM-HDR---GVP 385

Query: 234 L-FSAYNRVIQYLAKADKLEMSYCCFKKVLDS--------DCKIDTQSYNVLMTLFLNKG 284
                Y+ ++  L K  +++ +     K+ D            +D  +Y V++  F  KG
Sbjct: 386 PDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKG 445

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           L  +A  +   ME      D  TYE++I SL K    D A KL +EM  R
Sbjct: 446 LFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIAR 495


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 156/309 (50%), Gaps = 3/309 (0%)

Query: 204 FDVLNESRDFDGMLS--LFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKK 260
           F+ L  +R   G L+  +  E++H+  + G+   +  YN +I   ++   L+ +   F++
Sbjct: 259 FNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEE 318

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           ++ S+C+ D  +YN ++++    G   +A  +++ + +     D  TY  ++ + AK G 
Sbjct: 319 MIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGD 378

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           ++   ++ +E+ +  FR     + +++   GK GRLD ++ +Y EM+  G  P A  Y  
Sbjct: 379 VERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTV 438

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++S  K  ++  A ++ +EM  AG +P    F+ +I ++AKSG+ D A   F  M  +G
Sbjct: 439 LVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESG 498

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P    Y  +L++ A S +    M LY +M   G +P    Y  LL  LAK    D   
Sbjct: 499 VKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIE 558

Query: 501 KILLEMKTM 509
            ++ +M+ +
Sbjct: 559 GVIQDMEAV 567



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 166/365 (45%), Gaps = 10/365 (2%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ+   P    Y  L    ++  + D  +++F+EM+    +  +  ++A   V     KA
Sbjct: 285 RQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKA 344

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            + E+    FK++++   + D  +YN L+  F  +G   +   + E + K     DG TY
Sbjct: 345 QEAEL---MFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITY 401

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             MI    K GRLD A+ L+ EM+     P    +  LVDS+GK  R+  + KV  EM  
Sbjct: 402 NTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMAD 461

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G +P+   + +LI +YAK+G+ D A R +D M  +G +P+   + ++++  A+S +   
Sbjct: 462 AGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRK 521

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GLRPGLSTYTALL 487
            M ++  M + G+ P    Y  LL   A   + D    +   M +   + P       + 
Sbjct: 522 LMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNP-----LVIS 576

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
           ++L K + +   A +L      GY  D  S   +L  Y K G  +  L  L ++      
Sbjct: 577 SILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQHVPN 636

Query: 547 TNNFI 551
           ++N I
Sbjct: 637 SHNLI 641



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 155/330 (46%), Gaps = 3/330 (0%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA--AIKL 327
            Q +N +M ++   G    A ++ ++M   +   D  ++  +I + AKSG L A  A++L
Sbjct: 221 VQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALEL 280

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             E+++   RP    + +L+ +  +   LD ++ V+ EM     RP    Y +++  + +
Sbjct: 281 LHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGR 340

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            GK   A  ++ E+   GF+P+   +  ++ + AK G ++    +  ++ +AGF     T
Sbjct: 341 CGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGIT 400

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ ++ M+   G++D A+ LY+ M + G  P   TYT L+  L K   +  A K+L EM 
Sbjct: 401 YNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMA 460

Query: 508 TMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G     V+ S ++  Y K G  D A R    M  SG++ +      + +   ++    
Sbjct: 461 DAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETR 520

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               L    ++   K D  LY  +LA L +
Sbjct: 521 KLMVLYRAMIKDGYKPDDGLYQVLLAALAK 550



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 150/315 (47%), Gaps = 9/315 (2%)

Query: 304 DGSTYEL---MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL--DT 358
           +G+T ++   M+   A+SGR D A +L   M++++  P    F +L+++  K+G L    
Sbjct: 217 EGATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGV 276

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++++  E++  G RP A  Y +LI + ++   LD A+ +++EM  +  RP+   +  ++ 
Sbjct: 277 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 336

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
            H + GK   A  +F ++   GF P   TY+ LL   A  G V+   ++   +  AG R 
Sbjct: 337 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 396

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
              TY  ++ +  K   +D+A  +  EM+ +G + D     VL+  + K   +  A + L
Sbjct: 397 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 456

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             M  +G++        L  +  K+   + A+   +  VES  K D + Y  +L    R 
Sbjct: 457 EEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARS 516

Query: 598 QDEQNERHLMAILSA 612
            +    R LM +  A
Sbjct: 517 DE---TRKLMVLYRA 528



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 136/582 (23%), Positives = 236/582 (40%), Gaps = 75/582 (12%)

Query: 252  EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
            E +Y        SD  ++  S  V M     K   ++  E +    K E  +D   +  +
Sbjct: 729  ETAYQLMDDAARSDISLNILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGVDRRIWNAL 788

Query: 312  IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
            I + A+SG  + A  +F  M ++   P+      ++ ++   GRLD    V  E+Q    
Sbjct: 789  IHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDI 848

Query: 372  RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            + S    + ++E++AKAG +   +++++ M+ AG+ PN  L+ ++I     + +      
Sbjct: 849  KISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVEL 908

Query: 432  IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL---- 487
            +  +ME AGF P     + LL M+  +G  D  +++Y+S+  AGL P   TY  L+    
Sbjct: 909  MVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYS 968

Query: 488  ---------TLL----------------------AKRKLVDVAAKILLEMKTMGYSVDVS 516
                     TLL                       K KL + A  +  EM+T GY ++ S
Sbjct: 969  RNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRS 1028

Query: 517  ASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
               ++M +Y    +   A   L  M   GI      +  L  S   +   + A+ +L + 
Sbjct: 1029 IYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSL 1088

Query: 576  VESAAKVDLVLYTSVLAHLVRCQ-------------------DEQNERHLMAILSATKHK 616
              S  ++  + Y++VL   +R +                   D Q     +   S  +  
Sbjct: 1089 KSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAASLCEQT 1148

Query: 617  AHAFL-------CGLFTGP----EQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNY 665
              A L       CG F  P     +R   + + V  F   +   LE+ A+  FVN L + 
Sbjct: 1149 DDAILLLKSLQDCG-FDLPIRLLTERTSSLFTEVDSFLEKLG-TLEDSASLNFVNALEDL 1206

Query: 666  LVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRK 725
            L    +   A  ++++A +  ++   I   +   W  D+R LS GAAL+A+   L + + 
Sbjct: 1207 LWAFERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLRKLSAGAALVALTLWLDQMQD 1266

Query: 726  RMLYYG-VVPRRIKLVTGP------TLKIVIAQMLSSVESPF 760
              L      P+ I LVTG       +L+  I   L  + SPF
Sbjct: 1267 ASLQGAPESPKSIVLVTGEGEYNMVSLRKTIRAYLLEMGSPF 1308



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 101/487 (20%), Positives = 182/487 (37%), Gaps = 93/487 (19%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           +D    L +   A  +  Y P D  Y +L   L +  + D +  +  +M      N + +
Sbjct: 516 SDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVI 575

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
            S        L KA+ +       K+      + D +S   ++  +   G   K   + E
Sbjct: 576 SS-------ILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLE 628

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF---QEMKERNFRPSFNIFASLVDSMG 351
            + +   +      E  I  L K+G++  AI+ +   Q +K  +F    +++  L+  + 
Sbjct: 629 WIRQHVPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYEYLITYLE 688

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA----------------- 394
           +A     + +V+ +MQ  G  PS  ++ S I    + G  +TA                 
Sbjct: 689 EAELFPEACQVFCDMQFLGIVPSQKVFPSFIFQCCRLGFPETAYQLMDDAARSDISLNIL 748

Query: 395 ------------LRLWDEMR--IAGFRPNFG----LFTMIIESHAKSGKLDIAMSIFTDM 436
                       L+LW +    + G +   G    ++  +I ++A+SG  + A +IF  M
Sbjct: 749 SCRVAMIEAYGKLKLWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIM 808

Query: 437 ERAGFLPT-----------------------------------PSTYSCLLEMHASSGQV 461
            + G LPT                                    ST   +LE  A +G V
Sbjct: 809 IKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDV 868

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDV 520
              MK+YN M +AG  P +  Y  +++LL   K       ++ EM+  G+  D V  + +
Sbjct: 869 FEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTL 928

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN--------ALYESAK--- 569
           L++Y   G+ D  +     +  +G+  +      L     +N         LYE  K   
Sbjct: 929 LLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGL 988

Query: 570 -PLLETY 575
            P LE+Y
Sbjct: 989 TPKLESY 995


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 4/336 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  ML + L + + F+ + + ++E++       +  F   N
Sbjct: 85  AVECYRLTREHKFWVPFDTCKKML-EHLVKLKYFNLVWAFYEEILECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F++  +M   
Sbjct: 141 ILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF+EM  +   P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M+VY +M      P    Y +LI    K G L+ A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             TYT ++    K+  V   +K+L EM+  G++  V
Sbjct: 381 TGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSV 416



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 162/369 (43%), Gaps = 3/369 (0%)

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDS--DCKIDTQSYNVLMTLFLNKGLPYKAFE 291
           +FS    +IQ +        +   F  ++++  + + D   ++ L+T +L  G    A E
Sbjct: 28  MFSEAKSLIQVVVSRKGKGSASAVFAAIIETKGNQRSDIYVFSGLITAYLESGFLRDAVE 87

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
            Y    + +  +   T + M+  L K    +     ++E+ E  +  S   F  L+    
Sbjct: 88  CYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFC 147

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K G +  +  V+  +   G RPS   Y +L+  Y + G L+   +L   M  +G +P+  
Sbjct: 148 KEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVY 207

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            ++++I    K  K+D A  +F +M   G +P   T++ L++ H  +G+VD AM++Y  M
Sbjct: 208 TYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQM 267

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSV 530
            S  L P L TY  L+  L K+  ++ A  ++ EM   G   D ++ + ++    K+G +
Sbjct: 268 LSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDL 327

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D A    + M    IR ++     L     +      A+ ++   +    K D   YT +
Sbjct: 328 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMI 387

Query: 591 LAHLVRCQD 599
           +    +  D
Sbjct: 388 INEFCKKGD 396


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 167/369 (45%), Gaps = 3/369 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L K  +   +    +K+     KI+   YN ++       L   A+E+Y  M
Sbjct: 175 SYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQM 234

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
              + S D  T+  +I      G+L+ A  LF+EM  +N  P +  F  LVD++ K G L
Sbjct: 235 IAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNL 294

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  + + M   G  P+   Y SL++ Y    +++ A  + + +   G  PN   +  +
Sbjct: 295 KGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTM 354

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K   +D A+S+F DM+  G  P   TY+ L++    SG++  A +L + M   G 
Sbjct: 355 INGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQ 414

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
              + TY  L+  L K   VD A  ++ ++K  G   D+   ++L+  + K G + +A  
Sbjct: 415 PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQD 474

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             + + S G   N +    +     K  L++ A+ LL    ++    D V Y +++  L 
Sbjct: 475 VFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALF 534

Query: 596 RCQDEQNER 604
               ++NE+
Sbjct: 535 --HKDENEK 541



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 176/385 (45%), Gaps = 1/385 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I       ++  ++    K+L    + DT ++N L+      G   +A   ++ +
Sbjct: 105 TFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHV 164

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                 LD  +Y  +I  L K G    A+++ +++  +  + +  ++ +++DS+ K   +
Sbjct: 165 LALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLV 224

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++Y +M      P    + +LI  +   G+L+ A  L+ EM +    P++  F ++
Sbjct: 225 IDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNIL 284

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +++  K G L  A ++   M + G +P   TYS L++ +    QV+ A  + N+++  G 
Sbjct: 285 VDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGA 344

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P   +Y  ++    K K+VD A  +  +M+  G + D V+ + ++    K G + +A  
Sbjct: 345 APNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWE 404

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            +  M  +G   N F    L ++  KN   + A  L++   +   + D+  +  ++  L 
Sbjct: 405 LVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLC 464

Query: 596 RCQDEQNERHLMAILSATKHKAHAF 620
           +    +N + +   L +  +  +A+
Sbjct: 465 KVGRLKNAQDVFQDLLSKGYSVNAW 489



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 128/290 (44%), Gaps = 3/290 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
             LF EMV    KN    +  +N ++  L K   L+ +      ++      +  +Y+ L
Sbjct: 263 FGLFREMV---LKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSL 319

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +       KA  +  ++ +   + +  +Y  MI    K   +D A+ LF +M+ +  
Sbjct: 320 MDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGI 379

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + SL+D + K+GR+  + ++  EM   G   +   Y  LI++  K   +D A+ 
Sbjct: 380 APDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIA 439

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +++  G +P+   F ++I    K G+L  A  +F D+   G+     TY+ ++    
Sbjct: 440 LVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLC 499

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
             G  D A  L + M   G+ P   TY  L+  L  +   + A K+L EM
Sbjct: 500 KEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREM 549



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 106/228 (46%), Gaps = 4/228 (1%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +  SY  ++  F    +  +A  ++  M+    + D  TY  +I  L KSGR+  A +L 
Sbjct: 347 NAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELV 406

Query: 329 QEMKERNFRPSFNIFA--SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
            EM + N +P+ NIF    L+D++ K   +D ++ +  +++  G +P    +  LI    
Sbjct: 407 DEMHD-NGQPA-NIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLC 464

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K G+L  A  ++ ++   G+  N   + +++    K G  D A ++ + M+  G +P   
Sbjct: 465 KVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAV 524

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           TY  L++      + + A KL   M +  +   L     +L L ++ K
Sbjct: 525 TYETLIQALFHKDENEKAEKLLREMIARDVVYALEGLEMVLHLESEAK 572



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/294 (20%), Positives = 112/294 (38%), Gaps = 1/294 (0%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  T+ ++I        ++ A  +  ++ +  + P    F +L+  +   G++  ++  +
Sbjct: 102 DIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFH 161

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
             +   G       Y +LI    K G+  TAL++  ++     + N  ++  II+S  K 
Sbjct: 162 DHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKH 221

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
             +  A  +++ M      P   T+S L+      GQ++ A  L+  M    + P   T+
Sbjct: 222 KLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTF 281

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
             L+  L K   +  A  +L+ M   G   +V     LM  Y     V+ A   L  +  
Sbjct: 282 NILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQ 341

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            G   N      +     K  + + A  L           D V Y S++  L +
Sbjct: 342 MGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCK 395


>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 178/416 (42%), Gaps = 52/416 (12%)

Query: 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN 230
           L+  +D   +L +F W+K+QSWY P    Y                              
Sbjct: 20  LQRQHDWRCTLEVFSWSKKQSWYCPNSRLYT----------------------------- 50

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
                    R+I +L +  ++  +   F+++L   C+ D  +Y  L+  +    +  +A 
Sbjct: 51  ---------RLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEAL 101

Query: 291 EIYESMEKGE---CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK------ERNFRPSFN 341
            ++  M++     C  +  T   +I +L K G  D AI++F +M+      E    P+  
Sbjct: 102 AVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVI 161

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGH----RPSAPMYVSLIESYAKAGKLDTALRL 397
            +  L+D++ K G LD  MKV   M+        +P++  Y +LI +  K G  + A  L
Sbjct: 162 TYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEEL 221

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
            D M   G +P+   +T +I+++ K+G  + A + F  M+          Y+ +++ +  
Sbjct: 222 VDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGR 281

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G    A +++  M  +GLRP   TY +L+    K  L + +  +   M+  GY  +V  
Sbjct: 282 EGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNVLI 341

Query: 518 -SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
            S ++  Y K G+   A R L  M  +G + N      +  SC K+  +  A+ LL
Sbjct: 342 YSSLIDAYGKAGNYLEAARMLDMMRRAGCQPNLITYSAILSSCCKSNCWVEAQVLL 397



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 39/228 (17%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P++ +Y  LI    + G++  A  L+ EM +   + +   +T ++ ++ K+   + A+++
Sbjct: 44  PNSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAV 103

Query: 433 FTDMERAG---FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA------GLRPGLSTY 483
           F+ M+ +      P   T + L++     G  D A++++  M         G  P + TY
Sbjct: 104 FSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITY 163

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSS 543
             L+  L K  L+D+  K+L                    Y++DG+ D +          
Sbjct: 164 NVLIDALCKEGLLDIGMKVL-------------------QYMRDGNTDQS---------- 194

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            ++ N+     L  +C K  LYE A+ L++  VE   + D + YT+++
Sbjct: 195 -VQPNSATYNTLINACGKGGLYEKAEELVDLMVEHGVQPDHITYTALI 241


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 186/405 (45%), Gaps = 6/405 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           V G+  Y ++ D L  +    GM +   E+V + S         YN +I  L +A ++  
Sbjct: 51  VYGETTYKLVVDGLCGA----GMANQALELVRELSGVYTPTLFIYNGIITGLCRASRVMD 106

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y   +K+++     +  +Y +L+           A E+++ M++  C  +  TY  +I 
Sbjct: 107 AYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQ 166

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L+++G +D A+++  E +            ++V  + KA RLD ++K   EM+  G RP
Sbjct: 167 HLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRP 226

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRI-AGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           +   Y +L+  + + G+LD  +R ++E +   G       +   +++  K+G LD A   
Sbjct: 227 NEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKS 286

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
             ++ ++G +P   TYS L+   A +GQ D++++L   M   G++P + TY+ L+ +L K
Sbjct: 287 VEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCK 346

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFI 551
            +    A ++L  M+  G   +V   + +M  + K G +D   R    M  S    +   
Sbjct: 347 ERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVT 406

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +     K  + +SA  L E    S    D   Y+ V+  L R
Sbjct: 407 YSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCR 451



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 150/333 (45%), Gaps = 37/333 (11%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++  L +++K +++   F+++  + CK +  +Y  L+      G   +A  +     
Sbjct: 126 YTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQR 185

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV---------- 347
             E   D  T   ++  L K+ RLD A+K  +EM++   RP+   +++LV          
Sbjct: 186 SLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELD 245

Query: 348 --------------------------DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
                                     D++ KAG LD + K   E++  G  P    Y  L
Sbjct: 246 RVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSML 305

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I ++A+AG+ D +L L ++MR  G +P+   ++ +I    K  K   A  +   ME AG 
Sbjct: 306 INTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGS 365

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   TY+ +++    SG++D   ++Y  M  +   P + TY+ ++  L+K  ++D A K
Sbjct: 366 PPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVK 425

Query: 502 ILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHA 533
           +   +K+     D +A S V+    + G ++ A
Sbjct: 426 LFELIKSSREGPDAAAYSMVITSLCRAGKLEEA 458



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 170/357 (47%), Gaps = 5/357 (1%)

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           + V+++  K+D+Q++ +L T    +    +   ++  +         +TY+L++  L  +
Sbjct: 8   RSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGA 67

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G  + A++L +E+    + P+  I+  ++  + +A R+  + KV  +M      P+   Y
Sbjct: 68  GMANQALELVRELSG-VYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTY 126

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             L+    ++ K   A  ++ EM+  G +PN   +  +I+  +++G++D A+ +  + +R
Sbjct: 127 TILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIE-QR 185

Query: 439 AGFLPTPS-TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           +  LPT   T + ++     + ++D A+K    M   G+RP   TY+ L+    +   +D
Sbjct: 186 SLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELD 245

Query: 498 VAAKILLEMKTM-GYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
              +   E K   G S++ +A    L    K G +D A + +  +  SG+  +      L
Sbjct: 246 RVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSML 305

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
             +  +   ++++  LLE    +  K D+V Y++++  L + +  Q+   L+ ++ A
Sbjct: 306 INTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEA 362



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 118/254 (46%), Gaps = 2/254 (0%)

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243
           F    RQ    P +  Y  L     +  + D ++  F+E    + K G    +AY   + 
Sbjct: 215 FMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEE--EKARKGGSLEAAAYPGYLD 272

Query: 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303
            L KA  L+ +    +++  S    D  +Y++L+  F   G    + E+ E M +     
Sbjct: 273 ALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKP 332

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY  +I  L K  +   A +L + M+     P+   + S++D + K+G++D   +VY
Sbjct: 333 DVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVY 392

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
             M      P    Y  ++   +KAG LD+A++L++ ++ +   P+   ++M+I S  ++
Sbjct: 393 EMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRA 452

Query: 424 GKLDIAMSIFTDME 437
           GKL+ A  ++  ME
Sbjct: 453 GKLEEACGMYHGME 466



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 115/226 (50%), Gaps = 3/226 (1%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY ++I + A++G+ DA+++L ++M+    +P    +++L++ + K  +   + ++ 
Sbjct: 298 DVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLL 357

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
             M+  G  P+   Y S+++   K+GK+D   R+++ M  +   P+   +++I+   +K+
Sbjct: 358 ELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKA 417

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM--TSAGLRPGLS 481
           G LD A+ +F  ++ +   P  + YS ++     +G+++ A  +Y+ M  T AG      
Sbjct: 418 GMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVAGDNI-CR 476

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
               L+  L   +  D A +I+      G+ +  S    L+  ++D
Sbjct: 477 ALAGLVAALCDAERTDSARRIVEVASERGHRMTKSGDTDLVKIVED 522



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 38/215 (17%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQS  VP    Y ML +    +  FD  L L ++M     +NG+                
Sbjct: 291 RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDM----RRNGV---------------- 330

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
                             K D  +Y+ L+ +   +     AF + E ME      +  TY
Sbjct: 331 ------------------KPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTY 372

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++  L KSG++D   ++++ M +    P    ++ +++ + KAG LD+++K++  ++ 
Sbjct: 373 NSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKS 432

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
               P A  Y  +I S  +AGKL+ A  ++  M +
Sbjct: 433 SREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEV 467


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 4/331 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  K+ S+ VP D C  +L + L + + F  +   + E++       +  F   N
Sbjct: 85  AIECFRLTKKHSFRVPFDTCRNVL-EHLMKXKYFKLVWGFYKEILECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M   
Sbjct: 141 ILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  R+D A  LF EM +    P+   F +L+D   K GRLD +
Sbjct: 201 GVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M +Y +M   G  P    Y +LI    K G L  A  L DEM   G +P+   +T +I+ 
Sbjct: 261 MDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A  +   M +         Y+ L+      G+   A K+   M   GL+P 
Sbjct: 321 SCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             TYT ++    K+  V  A+++L EM+  G
Sbjct: 381 DETYTMIMNEFCKKGDVKKASELLREMQRNG 411



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 142/311 (45%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F     V+++L K    ++ +  +K++L+         +N+LM  F  +G    A  +++
Sbjct: 101 FDTCRNVLEHLMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        ++  ++    K G LD   +L   M+    +P    ++ L++ + K  
Sbjct: 161 AITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKES 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R+D +  ++ EM   G  P+   + +LI+ + K G+LD A+ ++ +M   GF P+   + 
Sbjct: 221 RMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M R G  P   TY+ L++     G +++A +L   M   
Sbjct: 281 TLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL+  L +      A K+L EM  +G   D     ++M  + K G V  A
Sbjct: 341 SIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKA 400

Query: 534 LRWLRFMGSSG 544
              LR M  +G
Sbjct: 401 SELLREMQRNG 411



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 148/340 (43%), Gaps = 1/340 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E +   +K    +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + MR +G +P+   ++++I    K  ++D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G++D AM +Y  M + G  P + TY  L+  L K+  +  A  +L EM  
Sbjct: 245 TTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSR 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A      M    IR ++ +   L     +      
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           A+ +L   +    K D   YT ++    +  D +    L+
Sbjct: 365 AEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELL 404



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 126/315 (40%), Gaps = 71/315 (22%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG +  AI+ F+  K+ +FR  F+   ++++ + K     
Sbjct: 59  KGTQRSDIYVFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+   A +Y                                  F +++
Sbjct: 119 LVWGFYKEILECGY--PASLY---------------------------------FFNILM 143

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               K G++ +A S+F  + + G  P+  +++ L+  +   G +D   +L N+M ++G++
Sbjct: 144 HRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQ 203

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P + TY+ L+  L K   +D A  +  EM   G   + V+ + ++  + K+G +D A+  
Sbjct: 204 PDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDI 263

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            R M + G                                      D+V Y +++  L +
Sbjct: 264 YRQMLNQGFSP-----------------------------------DVVTYNTLIYGLCK 288

Query: 597 CQDEQNERHLMAILS 611
             D +  R+L+  +S
Sbjct: 289 KGDLKQARYLLDEMS 303


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 195/461 (42%), Gaps = 42/461 (9%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLF-DEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           P +  Y  L D L +  +F+G  +L+ D +    +K+ I+    +N +I  L K  K+  
Sbjct: 470 PDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT----FNTMISGLCKMGKMVE 525

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F K+ D  C  D  +Y  L+  +       +AF++  +ME+   S     Y  +I 
Sbjct: 526 AEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLIS 585

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L KS RL     L  EM  R   P+   + +L+D   K G LD +   Y EM   G   
Sbjct: 586 GLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSA 645

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF--------------------------- 406
           +  +  +++    + G++D A  L  +M   GF                           
Sbjct: 646 NIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDES 705

Query: 407 -----RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
                 PN  ++ + I    K+GK+D A   F+ +   GF+P   TY  L+  ++++G V
Sbjct: 706 CKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNV 765

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           D A +L + M   GL P + TY AL+  L K + VD A ++  ++   G   +V   + L
Sbjct: 766 DEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTL 825

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  Y K G++D A +    M   GI  +      L     K+   E +  LL   +++  
Sbjct: 826 IDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885

Query: 581 KVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
              L+ Y +    LV+   + +  + M+   A K   + FL
Sbjct: 886 DSKLIEYCT----LVQGGFKTSNYNEMSKPEALKQNMNCFL 922



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 119/565 (21%), Positives = 233/565 (41%), Gaps = 33/565 (5%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +  + R  + ++  VP +  Y +L D    +   D  + L DEM+    K  + +   
Sbjct: 313 DEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC-- 370

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            N +I    K  ++  +     +++D + K D+ SYN L+  +  +G   +AF + + M 
Sbjct: 371 -NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 429

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +        TY  ++  L + G  D A++++  M +    P    +++L+D + K    +
Sbjct: 430 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFE 489

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  ++ ++   G   S   + ++I    K GK+  A  ++D+M+  G  P+   +  +I
Sbjct: 490 GASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 549

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           + + K+  +  A  +   MER    P+   Y+ L+     S ++     L   M   GL 
Sbjct: 550 DGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLT 609

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P + TY AL+    K  ++D A     EM   G S ++     ++  + + G +D A   
Sbjct: 610 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 669

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNAL-YESAKPLLETYVESAAKVDL---VLYTSVLA 592
           ++ M   G   ++       E  +K+ + Y + + + ++  ES     L   ++Y   +A
Sbjct: 670 MQKMVDHGFFPDH-------ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIA 722

Query: 593 HLVRCQDEQNERHLMAILSATKHKAHAFL-CGLFTGPEQRKQPVLSFVREFFHGIDYELE 651
            L +     + R   ++LS        F  C L  G           V E F   D  L 
Sbjct: 723 GLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGN-----VDEAFRLRDEMLR 777

Query: 652 EGAARYFV--NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSV 709
            G     V  N L+N L     ++RA+ ++   ++  LFP  + ++  I           
Sbjct: 778 RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLID---------- 827

Query: 710 GAALIAVMHTLHRFRKRMLYYGVVP 734
           G   I  M    + + +M+  G+ P
Sbjct: 828 GYCKIGNMDAAFKLKDKMIEEGISP 852



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 2/265 (0%)

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R F  S  +F  ++    + G    ++ V+  M  CG  PS     SL+ +  K G+  T
Sbjct: 150 REFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHT 209

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  ++ +M   G  P+  + ++++ +  K GK+D A      ME  G  P   TY  L+ 
Sbjct: 210 AHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLIN 269

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            + S G V++A  +   M+  G+   + TYT L+    K+  +D A K+L  M+     V
Sbjct: 270 GYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALV 329

Query: 514 -DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D  A  VL+  Y + G +D A+R L  M   G++TN FI   L     K      A+ +
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
           +   V+   K D   Y ++L    R
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCR 414



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 36/280 (12%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           +S N L+   +  G  + A  +Y+ M +     D     +M+ +  K G++D A    ++
Sbjct: 192 RSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKK 251

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK--- 387
           M+     P+   + SL++     G ++ +  V   M   G   +   Y  LI+ Y K   
Sbjct: 252 MENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCK 311

Query: 388 ---------------------------------AGKLDTALRLWDEMRIAGFRPNFGLFT 414
                                             GK+D A+RL DEM   G + N  +  
Sbjct: 312 MDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICN 371

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I  + K G++  A  + T M      P   +Y+ LL+ +   G    A  L + M   
Sbjct: 372 SLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE 431

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           G+ P + TY  LL  L +    D A +I   M   G + D
Sbjct: 432 GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPD 471



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 124/293 (42%), Gaps = 2/293 (0%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           + +++++    + G    A+ +F  M +    PS     SL++++ K G   T+  VY +
Sbjct: 157 TVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQ 216

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G  P   M   ++ ++ K GK+D A     +M   G  PN   +  +I  +   G 
Sbjct: 217 MIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGD 276

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT-SAGLRPGLSTYT 484
           ++ A  +   M   G      TY+ L++ +    ++D A K+   M   A L P    Y 
Sbjct: 277 VEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYG 336

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS 543
            L+    +   +D A ++L EM  +G   ++   + L+  Y K G +  A   +  M   
Sbjct: 337 VLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDW 396

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            ++ +++    L +   +      A  L +  ++   +  ++ Y ++L  L R
Sbjct: 397 NLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 128/273 (46%), Gaps = 1/273 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           ++    K  K++ +    KK+ +   + +  +Y+ L+  +++ G    A  + + M +  
Sbjct: 232 MVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKG 291

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTS 359
            S +  TY L+I    K  ++D A K+ + M+E     P    +  L+D   + G++D +
Sbjct: 292 VSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDA 351

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           +++  EM   G + +  +  SLI  Y K G++  A  +   M     +P+   +  +++ 
Sbjct: 352 VRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDG 411

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + + G    A ++   M + G  PT  TY+ LL+     G  D A+++++ M   G+ P 
Sbjct: 412 YCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPD 471

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
              Y+ LL  L K +  + A+ +  ++   G++
Sbjct: 472 EVGYSTLLDGLFKMENFEGASTLWKDILARGFT 504


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 175/407 (42%), Gaps = 4/407 (0%)

Query: 211 RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
           R F   L LFDE+V    +  + +++A   V++ L +      +     ++  S C +  
Sbjct: 194 RQFRMALHLFDEIVSSGLRPDVYVYTA---VVRSLCELKDFIRAREVIGRMESSGCDLSV 250

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            +YNV +         ++A EI   +       D  TY  ++  L K    +A  ++  E
Sbjct: 251 ATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNE 310

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M E  F PS    ++LVD + K G + ++  +  +++  G  PS  +Y +LI S  K GK
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           LD A  L++ M   G  PN   ++++I+S  K GKLD+A+     M   G   T   YS 
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L+  H   G++ +A  L++ M + GL+P +  YT+L++   K   +  A ++  EM   G
Sbjct: 431 LISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKG 490

Query: 511 YSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            S +      L+  +   + +  A +    M    +  N      L E   K      A 
Sbjct: 491 ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616
            LL+  VE     D   Y  +++ L         R  M  L   + K
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQK 597



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 127/274 (46%), Gaps = 10/274 (3%)

Query: 223 MVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           + H+ +  GIS  +  +  +I  L  A+++  +   F ++++ +   +  +YNVL+    
Sbjct: 482 LYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHC 541

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR---- 337
            +G   +AFE+ + M +     D  TY  +I  L  +GR+  A +   +++    +    
Sbjct: 542 KEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEI 601

Query: 338 ----PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P+   + +L++ + K G +D +  +  EM      P+   Y   ++     G ++ 
Sbjct: 602 EGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEK 661

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A++L D + + GF  N   + ++I    K G++  A  +  +M  +G  P   +YS ++ 
Sbjct: 662 AIQLHDVL-LEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIY 720

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            +   G +  A+KL+ SM + G+ P    Y  L+
Sbjct: 721 EYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLI 754



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 151/361 (41%), Gaps = 14/361 (3%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           SLFDEM+ +  K  + +   Y  +I    K  +L  ++  + ++       +T ++  L+
Sbjct: 446 SLFDEMIANGLKPNVVI---YTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALI 502

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
           +   +     +A +++  M +     +  TY ++I    K G    A +L  EM E+   
Sbjct: 503 SGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLV 562

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC--------GHRPSAPMYVSLIESYAKAG 389
           P    +  L+  +   GR+  + +   ++QG         G  P+   Y +LI    K G
Sbjct: 563 PDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIG 622

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
            +D A  L  EM  +   PN   +   ++     G ++ A+ +  D+   GFL    TY+
Sbjct: 623 LMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLH-DVLLEGFLANTVTYN 681

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+      G++  A ++  +M  +G+ P   +Y+ ++    +R  +  A K+   M   
Sbjct: 682 ILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNR 741

Query: 510 GYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE-SCMKNALYES 567
           G + D  A + L+      G +  A      M   G++ N      L   +C+ +++  +
Sbjct: 742 GVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSST 801

Query: 568 A 568
           A
Sbjct: 802 A 802



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 94/208 (45%), Gaps = 1/208 (0%)

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M  CG  P       ++    +  +   AL L+DE+  +G RP+  ++T ++ S  +   
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
              A  +   ME +G   + +TY+  +     + +V  A+++ N ++  GLR  + TY  
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGY-SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
           L+  L K +  +   +++ EM   G+   + + S+++    K G++  A   +  +   G
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFG 350

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLL 572
           +  + F+   L  S  K+   + A+ L 
Sbjct: 351 VAPSLFVYNALINSMCKDGKLDEAESLF 378



 Score = 48.1 bits (113), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 4/154 (2%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y    D L    + +  + L D ++     N ++    YN +I+   K  +++ 
Sbjct: 640 LPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVT----YNILIRGFCKLGRIQE 695

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +      ++DS    D  SY+ ++  +  +G   +A +++ESM     + D   Y  +I 
Sbjct: 696 AAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIY 755

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
               +G L  A +L  +M  R  +P+   + SL+
Sbjct: 756 GCCVTGELTKAFELRDDMMRRGVKPNRATYNSLI 789


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 187/409 (45%), Gaps = 5/409 (1%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVH-DSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           G + Y  L   L    D    +  F+  V  +S KN     ++   +I  L +  K+E++
Sbjct: 152 GPDDYTFLLRELGNRGDSAKAVRCFEFAVRRESGKNEQGKLAS--AMISTLGRLGKVELA 209

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F   L         +++ L++ +   G   +A ++++SM+      +  TY  +I +
Sbjct: 210 KAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDA 269

Query: 315 LAKSG-RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
             K G      +++F  M     +P    F SL+    + G  + + +++  M   G   
Sbjct: 270 CGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQ 329

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y +L+++  K G++D A  +  EM      PN   ++ +I+ +AK G+LD A+++F
Sbjct: 330 DIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMF 389

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +M+  G      +Y+ LL ++A  G+ + A+ +   M +AG+R  + TY ALL    K+
Sbjct: 390 NEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQ 449

Query: 494 KLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
              D   ++  EMK    S ++ + S ++ VY K G    A+   R    +G++ +  + 
Sbjct: 450 YRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLY 509

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
             L ++  KN L ES+  LL+   +   + ++V Y S++    R    Q
Sbjct: 510 SALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQ 558



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 180/401 (44%), Gaps = 44/401 (10%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
             A  +VIQY      LE     F+  L   C  D   Y  L+    N+G   KA   +E
Sbjct: 123 LEALQQVIQYGKDDKALENVLLNFESRL---CGPD--DYTFLLRELGNRGDSAKAVRCFE 177

Query: 295 SMEKGECSLD--GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
              + E   +  G     MI +L + G+++ A  +F    +  +  +   F++L+ + G+
Sbjct: 178 FAVRRESGKNEQGKLASAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGR 237

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG-KLDTALRLWDEMRIAGFRPNFG 411
           +G  + ++KV+  M+  G  P+   Y ++I++  K G +    + ++D M   G +P+  
Sbjct: 238 SGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRI 297

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            F  ++   ++ G  + A  +F+ M   G      TY+ LL+     GQ+D A ++ + M
Sbjct: 298 TFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEM 357

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSV 530
            +  + P + TY+ ++   AK   +D A  +  EMK +G  +D VS + +L VY K G  
Sbjct: 358 PTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRF 417

Query: 531 DHALRWLRFMGSSGIR----TNNFI------------VRQLFESCM-------------- 560
           + AL   + M ++GIR    T N +            VR++FE                 
Sbjct: 418 EQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTL 477

Query: 561 -----KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                K  LY+ A  +   + ++  K D+VLY++++  L +
Sbjct: 478 IDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCK 518



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 148/355 (41%), Gaps = 36/355 (10%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D + +    D    +  EM    +KN +     Y+ +I   AK  +L+ +   F 
Sbjct: 334 YNTLLDAVCKGGQMDLAFEIMSEM---PTKNILPNVVTYSTMIDGYAKVGRLDDALNMFN 390

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++      +D  SYN L++++   G   +A ++ + ME      D  TY  ++    K  
Sbjct: 391 EMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQY 450

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R D   ++F+EMK     P+   +++L+D   K G    +M+V+ E +  G +    +Y 
Sbjct: 451 RYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYS 510

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI++  K G +++++ L DEM   G RPN   +  II++  +S     A  +  D    
Sbjct: 511 ALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSAS---AQCVVDDSGET 567

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSA------------------------------MKLYN 469
             L   S  S +++    S   D                                + ++ 
Sbjct: 568 TALQVESLSSIVVQEAIESQAADKEDNRIIEIFGKLAAEKACEAKNSGKQEILCILGVFQ 627

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
            M    ++P + T++A+L   ++    + A+ +L E++     V   A  +LM Y
Sbjct: 628 KMHELKIKPNVVTFSAILNACSRCDSFEDASMLLEELRLFDNQVYGVAHGLLMGY 682


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 197/450 (43%), Gaps = 28/450 (6%)

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
           AL   N    +   F+  +R+  Y P D  Y ++   L ++ + D    L  ++     +
Sbjct: 47  ALAKANAGQLAYEKFQQMQRRG-YPPDDFTYSIVLRGLCKAGELDKAKELLGQL----RE 101

Query: 230 NGISL-FSAYNRVIQYLAKADKLEMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPY 287
           +G+ L    Y+ VI    KA +++ +   FK +     C  D  ++N L+    +     
Sbjct: 102 SGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMS 161

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +AF ++E M K  C  +  +Y  ++  L K+GRLD A +L++EM E++  P    + S V
Sbjct: 162 EAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFV 221

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS-----------------LIESYAKAGK 390
             + KA R+  +     +M   G +  A  + +                 +IE   ++G 
Sbjct: 222 TGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGM 281

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL---PTPST 447
           LD A + ++EM      P+  LF  +I +  KS +L   + +F  M+        P   T
Sbjct: 282 LDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLET 341

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ +++    + Q+D A +L N M + GL P + TY+AL+  L K   +D A  +L EM 
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 508 TMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G   D  + + +L    K G VD+AL  L  M + G   +      L +   K    +
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRID 461

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            A   L   V +    D+  YT ++  L R
Sbjct: 462 EAITFLAKMVAAKCTPDVFSYTIIITALCR 491



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 167/351 (47%), Gaps = 7/351 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKA--FEIY 293
           A N++I++L ++  L+ +   F++++  +     + +N L+  +  +K LP     F+  
Sbjct: 268 AQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRM 327

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           +SM++  C  +  TY +M+ +L K+ +LD A +L  EM      P    +++LVD + K 
Sbjct: 328 KSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKL 387

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G+LD +  +  EM   G  P +    S++ + +KAGK+D AL   + M+  G  P+   +
Sbjct: 388 GKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTY 447

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +++   K+G++D A++    M  A   P   +Y+ ++     SGQ   A  ++  M  
Sbjct: 448 NTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVK 507

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
            G+ P    Y +LL  LA+  L D+A ++L   KT     D V    V+    K G  + 
Sbjct: 508 RGVLPDTVLYHSLLDGLARNGLEDLALELL---KTSLCKPDFVMHKMVVDGLCKAGKAED 564

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           A   +  M  +G   + F    +     K    + A+ L++   E+   V+
Sbjct: 565 ACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASETHTSVE 615



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 108/454 (23%), Positives = 188/454 (41%), Gaps = 59/454 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ +VL        ++ LFD +         S+F+ YN  +  LAKA+  +++Y  F+
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQH-SVFT-YNCFLDALAKANAGQLAYEKFQ 62

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++       D  +Y++++      G   KA E+   + +    L+  TY ++I    K+ 
Sbjct: 63  QMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKAS 122

Query: 320 RLDAAIKLFQEMKE-RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           R+D A+++F+ M       P    F SL+  +    R+  +  ++  M   G  P+   Y
Sbjct: 123 RVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISY 182

Query: 379 VSLIESYAKAGKLDTALRLWDEM-----------------------RIA----------- 404
            +L++   KAG+LD A RLW+EM                       R+A           
Sbjct: 183 STLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVT 242

Query: 405 -GFRPNFGLFTMII-----ESHA------------KSGKLDIAMSIFTDMERAGFLPTPS 446
            G + +   F+ +I     + HA            +SG LD A   F +M      P+  
Sbjct: 243 KGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAE 302

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAG---LRPGLSTYTALLTLLAKRKLVDVAAKIL 503
            ++ L+     S ++   + L+  M S       P L TY  ++  L K K +D A +++
Sbjct: 303 LFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 504 LEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            EM   G S DV     L+  + K G +D A   L  M   G+  ++F    +  +  K 
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              + A   LET     +  DLV Y ++L  L +
Sbjct: 423 GKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 158/338 (46%), Gaps = 2/338 (0%)

Query: 256 CCFK-KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           C F  ++LD+    + + +NVLM   +  G    A  +++ M+         ++  MI  
Sbjct: 101 CAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISG 160

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           + ++G LD A  L + M E    P    + +L+  + + GR++ +  V+ +M G G +P+
Sbjct: 161 MCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPN 220

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           A ++  LI+++ K G  +T L L  EMR  G RP+   +  I+    ++  L  A  I  
Sbjct: 221 AVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVV 280

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M  AG  P   TY+ L++ +    ++D AM++  +M + G+     TYTAL++ L+K  
Sbjct: 281 EMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAG 340

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
               A ++L EM   G   D  + + V+  + + G V   LR L+ M + G +       
Sbjct: 341 RSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYN 400

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +     K    ++A  LL   +      D + Y  +L
Sbjct: 401 VIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILL 438



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 172/360 (47%), Gaps = 4/360 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N +++ L +  +L  +   F ++     +    S+N +++     G    A  ++  M 
Sbjct: 119 FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMS 178

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +   + D  TY  +I  L + GR++ A  +F++M  R  +P+  +F  L+D+  K G  +
Sbjct: 179 EAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAE 238

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           T ++++ EM+  G RP A  Y +++    +A  L +A  +  EMR AG RP+   +T +I
Sbjct: 239 TMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLI 298

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           + + K  +LD+AM I  +M   G      TY+ L+   + +G+   A ++   M  AGL 
Sbjct: 299 DGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLE 358

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P  +TYT ++    ++  V    ++L EM+  G    V   +V+M  + K G + +A   
Sbjct: 359 PDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADML 418

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M + G+  ++     L +   K+        + E         DL +YTS++  +V+
Sbjct: 419 LNAMINIGVSPDDITYNILLDGHCKHG---KVTDIEELKSAKGTVPDLGVYTSIVGEIVK 475



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 147/316 (46%), Gaps = 7/316 (2%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           ++FDEM    S+       ++N +I  + +A  L+ +    +++ ++    D  +Y  L+
Sbjct: 137 NVFDEM---QSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALI 193

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                 G    A  ++E M       +   + ++I +  K G  +  ++L +EM+ER  R
Sbjct: 194 QGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVR 253

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P    + ++V+ + +A  L ++  + +EM+  G RP    Y +LI+ Y K  +LD A+ +
Sbjct: 254 PDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEI 313

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
              M   G   +   +T +I   +K+G+   A  +  +M  AG  P  +TY+ +++    
Sbjct: 314 KQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCR 373

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G V + ++L   M + G +PG+ TY  ++    K   +  A  +L  M  +G S D   
Sbjct: 374 KGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDIT 433

Query: 518 SDVLMVYIKDGSVDHA 533
            ++L+    DG   H 
Sbjct: 434 YNILL----DGHCKHG 445



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 128/277 (46%), Gaps = 1/277 (0%)

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A   + ++ +    P   +F  L+  + + G L ++  V+ EMQ  G R +   + ++I 
Sbjct: 100 ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMIS 159

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
              +AG LD A  L   M  AG  P+   +  +I+   + G+++ A  +F  M   G  P
Sbjct: 160 GMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKP 219

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
               ++ L++ H   G  ++ ++L+  M   G+RP   TY A++  L + + +  A+ I+
Sbjct: 220 NAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIV 279

Query: 504 LEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
           +EM++ G   D V+ + ++  Y K+  +D A+   + M + G+  +      L     K 
Sbjct: 280 VEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKA 339

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
                A+ +L   +E+  + D   YT V+    R  D
Sbjct: 340 GRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGD 376


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 186/405 (45%), Gaps = 6/405 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           V G+  Y ++ D L  +    GM +   E+V + S         YN +I  L +A ++  
Sbjct: 51  VYGETTYKLVVDGLCGA----GMANQALELVRELSGVYTPTVFIYNGIITGLCRASRVMD 106

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y   +K+++     +  +Y +L+           A E+++ M++  C  +  TY  +I 
Sbjct: 107 AYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQ 166

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L+++G +D A+++  E +            ++V  + KA RLD ++K   EM+  G RP
Sbjct: 167 HLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRP 226

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRI-AGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           +   Y +L+  + + G+LD  +R ++E +   G       +   +++  K+G LD A   
Sbjct: 227 NEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKS 286

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
             ++ ++G +P   TYS L+   A +GQ D++++L   M   G++P + TY+ L+ +L K
Sbjct: 287 VEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCK 346

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFI 551
            +    A ++L  M+  G   +V   + +M  + K G +D   R    M  S    +   
Sbjct: 347 ERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVT 406

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +     K  + +SA  L E    S    D   Y+ V+  L R
Sbjct: 407 YSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCR 451



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 150/333 (45%), Gaps = 37/333 (11%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++  L +++K +++   F+++  + CK +  +Y  L+      G   +A  +     
Sbjct: 126 YTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQR 185

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV---------- 347
             E   D  T   ++  L K+ RLD A+K  +EM++   RP+   +++LV          
Sbjct: 186 SLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELD 245

Query: 348 --------------------------DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
                                     D++ KAG LD + K   E++  G  P    Y  L
Sbjct: 246 RVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSML 305

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I ++A+AG+ D +L L ++MR  G +P+   ++ +I    K  K   A  +   ME AG 
Sbjct: 306 INTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGS 365

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   TY+ +++    SG++D   ++Y  M  +   P + TY+ ++  L+K  ++D A K
Sbjct: 366 PPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVK 425

Query: 502 ILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHA 533
           +   +K+     D +A S V+    + G ++ A
Sbjct: 426 LFELIKSSREGPDAAAYSMVITSLCRAGKLEEA 458



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 170/357 (47%), Gaps = 5/357 (1%)

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           + V+++  K+D+Q++ +L T    +    +   ++  +         +TY+L++  L  +
Sbjct: 8   RSVVEAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGA 67

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G  + A++L +E+    + P+  I+  ++  + +A R+  + KV  +M      P+   Y
Sbjct: 68  GMANQALELVRELSG-VYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTY 126

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             L+    ++ K   A  ++ EM+  G +PN   +  +I+  +++G++D A+ +  + +R
Sbjct: 127 TILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIE-QR 185

Query: 439 AGFLPTPS-TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           +  LPT   T + ++     + ++D A+K    M   G+RP   TY+ L+    +   +D
Sbjct: 186 SLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELD 245

Query: 498 VAAKILLEMKTM-GYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
              +   E K   G S++ +A    L    K G +D A + +  +  SG+  +      L
Sbjct: 246 RVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSML 305

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
             +  +   ++++  LLE    +  K D+V Y++++  L + +  Q+   L+ ++ A
Sbjct: 306 INTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEA 362



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 121/255 (47%), Gaps = 4/255 (1%)

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVI 242
           F    RQ    P +  Y  L     +  + D ++  F+E   + ++ G SL  +AY   +
Sbjct: 215 FMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEE---EKARKGGSLEAAAYPGYL 271

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
             L KA  L+ +    +++  S    D  +Y++L+  F   G    + E+ E M +    
Sbjct: 272 DALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVK 331

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
            D  TY  +I  L K  +   A +L + M+     P+   + S++D + K+G++D   +V
Sbjct: 332 PDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRV 391

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           Y  M      P    Y  ++   +KAG LD+A++L++ ++ +   P+   ++M+I S  +
Sbjct: 392 YEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCR 451

Query: 423 SGKLDIAMSIFTDME 437
           +GKL+ A  ++  ME
Sbjct: 452 AGKLEEACGMYHGME 466



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 127/262 (48%), Gaps = 3/262 (1%)

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
           ++  +Y   +      G   +A +  E + +     D  TY ++I + A++G+ DA+++L
Sbjct: 262 LEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLEL 321

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
            ++M+    +P    +++L++ + K  +   + ++   M+  G  P+   Y S+++   K
Sbjct: 322 LEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCK 381

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           +GK+D   R+++ M  +   P+   +++I+   +K+G LD A+ +F  ++ +   P  + 
Sbjct: 382 SGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAA 441

Query: 448 YSCLLEMHASSGQVDSAMKLYNSM--TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
           YS ++     +G+++ A  +Y+ M  T AG          L+  L   K  D A +I+  
Sbjct: 442 YSMVITSLCRAGKLEEACGMYHGMEVTVAGDNI-CRALAGLVAALCDAKRTDSARRIVEV 500

Query: 506 MKTMGYSVDVSASDVLMVYIKD 527
            +  G+ V  S    L   ++D
Sbjct: 501 ARERGHRVTKSGDTDLAKIVED 522



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 38/215 (17%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQS  VP    Y ML +    +  FD  L L ++M     +NG+                
Sbjct: 291 RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDM----RRNGV---------------- 330

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
                             K D  +Y+ L+ +   +     AF + E ME      +  TY
Sbjct: 331 ------------------KPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTY 372

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++  L KSG++D   ++++ M +    P    ++ +++ + KAG LD+++K++  ++ 
Sbjct: 373 NSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKS 432

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
               P A  Y  +I S  +AGKL+ A  ++  M +
Sbjct: 433 SREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEV 467


>gi|356532363|ref|XP_003534743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 693

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 131/553 (23%), Positives = 238/553 (43%), Gaps = 56/553 (10%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++ L +    E S   F ++L    + +  +++ +++      LP KA E +E M 
Sbjct: 160 YNVTLKVLREVKDFEGSEKLFDEMLQRGVEPNLITFSTIISSASVCSLPDKAMEWFEKMP 219

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D S    MI + A SG  D A+KL+   K   +R     F++L+   G     D
Sbjct: 220 SFGVEPDASVASFMIHAYAHSGNADMALKLYGRAKAEKWRVDTAAFSALIKMCGMLENFD 279

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + VY +M+  G +P+   Y +L+ +  +A +   A  +++EM   GF PN+     ++
Sbjct: 280 GCLSVYNDMKVLGAKPNMVTYNALLYAMGRAKRALDAKAIYEEMISNGFSPNWPTHAALL 339

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-L 476
           +++ K+   + A+ ++ +M+  G   T   Y+ LL M A  G  D A +++  M S+G  
Sbjct: 340 QAYCKARFPEDALGVYKEMKGNGMDITADLYNKLLAMCADVGYTDRASEIFYEMKSSGTC 399

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
           +P   T+++++T+ ++   V  A  +L EM   G+   +   + ++  Y K    D  ++
Sbjct: 400 QPDSWTFSSMITMYSRSGKVSEAEGMLNEMIQSGFQPTIFVMTSLICCYGKAKRTDDVVK 459

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             + +   GI  N+     L      N L ++ K  L    +   K +  L T V     
Sbjct: 460 IFKQLLDLGIVPNDHFCCSLL-----NVLTQTPKEELGKLTDCIEKANTKLGTVV----- 509

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
                   R+LM  L   +    AF          RK+ +     E  + ID E++    
Sbjct: 510 --------RYLMEELEGDE----AF----------RKEAL-----ELLNSIDAEVK---- 538

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
           +   N L++  V +    RAR +  +    +++   I F     WSL ++ LSVGAA+ A
Sbjct: 539 KPLCNCLIDLCVKLNVPERARDLLDLGLMLEIYTN-IQFKSQTQWSLHLKELSVGAAMTA 597

Query: 716 VMHTLHRFRKRMLYYGVVPRRIKLVTG--------PTLKIVIAQMLSSVESPFEVSK--- 764
           +   ++   K +     +P  + + TG          L  V    L  + +PF  SK   
Sbjct: 598 LHVWINELSKALESGEDLPPLLGINTGQGKHKYSDKGLASVFESHLKELNAPFHESKAGW 657

Query: 765 -VVLRAPGDSVME 776
            +V +A   S +E
Sbjct: 658 FLVTKAAAKSWLE 670



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 121/271 (44%), Gaps = 42/271 (15%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISL 234
           ++D +L L+  AK + W V     +  L  +     +FDG LS++++M V  +  N ++ 
Sbjct: 242 NADMALKLYGRAKAEKWRV-DTAAFSALIKMCGMLENFDGCLSVYNDMKVLGAKPNMVT- 299

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              YN ++  + +A          K+ LD                         A  IYE
Sbjct: 300 ---YNALLYAMGRA----------KRALD-------------------------AKAIYE 321

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M     S +  T+  ++ +  K+   + A+ +++EMK      + +++  L+      G
Sbjct: 322 EMISNGFSPNWPTHAALLQAYCKARFPEDALGVYKEMKGNGMDITADLYNKLLAMCADVG 381

Query: 355 RLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
             D + +++ EM+  G  +P +  + S+I  Y+++GK+  A  + +EM  +GF+P   + 
Sbjct: 382 YTDRASEIFYEMKSSGTCQPDSWTFSSMITMYSRSGKVSEAEGMLNEMIQSGFQPTIFVM 441

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           T +I  + K+ + D  + IF  +   G +P 
Sbjct: 442 TSLICCYGKAKRTDDVVKIFKQLLDLGIVPN 472


>gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa]
 gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa]
          Length = 647

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 158/331 (47%), Gaps = 3/331 (0%)

Query: 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN 230
           L  +++ DT+L   ++ + +  +      Y +   VL + RD + +  LFDEM+  + K 
Sbjct: 97  LNNMSNPDTALLALKFFRERLEFNREVVVYNVTMKVLRKCRDLNKVEKLFDEMIERAVKP 156

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
               FS      +    ADK   +   F+K+       D  +++ ++  +   G   KA 
Sbjct: 157 DNVTFSTIISCARLCNLADK---AVEWFEKMPSFGLDPDDVTFSTMIDSYGRVGNVEKAL 213

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            +Y+     +  LD +T+  +I     SG  D  + +++EMK    +P+  I+ +L+D+M
Sbjct: 214 SLYDRARTEKWRLDTTTFSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAM 273

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
           G+A R   + K Y ++   G  PS   Y +L+ +Y +A   +  ++++ EM+      N 
Sbjct: 274 GRARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNV 333

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
            L+  I+   A  G +D A+ IF DM+ +G  P   T+S ++ M +  G+V  A  + N 
Sbjct: 334 LLYNTILAMCADLGFVDEAIEIFEDMKNSGISPDSWTFSSMITMSSCCGKVSEAENMLNE 393

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           M  AG +P +   T+L+    K + +D   K
Sbjct: 394 MFEAGFQPNIFVLTSLIQCYGKAQRIDDVVK 424



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 108/469 (23%), Positives = 203/469 (43%), Gaps = 39/469 (8%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y + +  L K   L+   KLF EM ER  +P    F++++         D +++ + +M 
Sbjct: 126 YNVTMKVLRKCRDLNKVEKLFDEMIERAVKPDNVTFSTIISCARLCNLADKAVEWFEKMP 185

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P    + ++I+SY + G ++ AL L+D  R   +R +   F+ +I  +  SG  D
Sbjct: 186 SFGLDPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFD 245

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             ++++ +M+  G  P    Y+ LL+    + +   A K Y  +  +GL P  +TY ALL
Sbjct: 246 CCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYATYAALL 305

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIR 546
               + +  +   KI  EMK    S++V   + ++    D G VD A+     M +SGI 
Sbjct: 306 RAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVDEAIEIFEDMKNSGIS 365

Query: 547 TNNFIVRQLF--ESC---------MKNALYESA--------KPLLETYVESAAKVDLVLY 587
            +++    +    SC         M N ++E+           L++ Y ++    D+V  
Sbjct: 366 PDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVLTSLIQCYGKAQRIDDVVKT 425

Query: 588 TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFF---H 644
            + L  L+   D++    L+ +++ T ++      G      +R  P L  V +      
Sbjct: 426 FNRLYELLITPDDRFCGCLLNVMTQTPNEE----LGKLVDCVERANPKLGHVVKLLVEEQ 481

Query: 645 GIDYELEEGAARYFVNV-----------LLNYLVLMGQINRARCVWKVAYENKLFPKAIV 693
           G +   ++ AA  F N+           L++  V +  + RA  +        ++   I 
Sbjct: 482 GNEGNFKKEAADLFDNISTEVKKAYCNCLIDLCVKLNMLERACELLDHGLTLGIYTD-IQ 540

Query: 694 FDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG 742
                 WSL++++LS GAAL A+   ++   K +     +P  + + TG
Sbjct: 541 SKTSTQWSLNLKSLSSGAALTALHVWINDLSKALEAGEQLPPLLGINTG 589



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 119/263 (45%), Gaps = 9/263 (3%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P D  +  + D      + +  LSL+D    +  +   + FS   R+ +     D     
Sbjct: 191 PDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFD----- 245

Query: 255 YCC---FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
            CC   ++++     K +   YN L+        P++A + Y+ +     S   +TY  +
Sbjct: 246 -CCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYATYAAL 304

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           + +  ++   +  IK+++EMKE+    +  ++ +++      G +D +++++ +M+  G 
Sbjct: 305 LRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVDEAIEIFEDMKNSGI 364

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P +  + S+I   +  GK+  A  + +EM  AGF+PN  + T +I+ + K+ ++D  + 
Sbjct: 365 SPDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVLTSLIQCYGKAQRIDDVVK 424

Query: 432 IFTDMERAGFLPTPSTYSCLLEM 454
            F  +      P      CLL +
Sbjct: 425 TFNRLYELLITPDDRFCGCLLNV 447


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 156/309 (50%), Gaps = 3/309 (0%)

Query: 204 FDVLNESRDFDGMLS--LFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKK 260
           F+ L  +R   G L+  +  E++H+  + G+   +  YN +I   ++   L+ +   F++
Sbjct: 99  FNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEE 158

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           ++ S+C+ D  +YN ++++    G   +A  +++ + +     D  TY  ++ + AK G 
Sbjct: 159 MIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGD 218

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           ++   ++ +E+ +  FR     + +++   GK GRLD ++ +Y EM+  G  P A  Y  
Sbjct: 219 VERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTV 278

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++S  K  ++  A ++ +EM  AG +P    F+ +I ++AKSG+ D A   F  M  +G
Sbjct: 279 LVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESG 338

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P    Y  +L++ A S +    M LY +M   G +P    Y  LL  LAK    D   
Sbjct: 339 VKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIE 398

Query: 501 KILLEMKTM 509
            ++ +M+ +
Sbjct: 399 GVIQDMEAV 407



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 166/365 (45%), Gaps = 10/365 (2%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ+   P    Y  L    ++  + D  +++F+EM+    +  +  ++A   V     KA
Sbjct: 125 RQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKA 184

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            + E+    FK++++   + D  +YN L+  F  +G   +   + E + K     DG TY
Sbjct: 185 QEAEL---MFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITY 241

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             MI    K GRLD A+ L+ EM+     P    +  LVDS+GK  R+  + KV  EM  
Sbjct: 242 NTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMAD 301

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G +P+   + +LI +YAK+G+ D A R +D M  +G +P+   + ++++  A+S +   
Sbjct: 302 AGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRK 361

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GLRPGLSTYTALL 487
            M ++  M + G+ P    Y  LL   A   + D    +   M +   + P       + 
Sbjct: 362 LMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNP-----LVIS 416

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
           ++L K + +   A +L      GY  D  S   +L  Y K G  +  L  L ++      
Sbjct: 417 SILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQHVPN 476

Query: 547 TNNFI 551
           ++N I
Sbjct: 477 SHNLI 481



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 155/330 (46%), Gaps = 3/330 (0%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA--AIKL 327
            Q +N +M ++   G    A ++ ++M   +   D  ++  +I + AKSG L A  A++L
Sbjct: 61  VQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALEL 120

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             E+++   RP    + +L+ +  +   LD ++ V+ EM     RP    Y +++  + +
Sbjct: 121 LHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGR 180

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            GK   A  ++ E+   GF+P+   +  ++ + AK G ++    +  ++ +AGF     T
Sbjct: 181 CGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGIT 240

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ ++ M+   G++D A+ LY+ M + G  P   TYT L+  L K   +  A K+L EM 
Sbjct: 241 YNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMA 300

Query: 508 TMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G     V+ S ++  Y K G  D A R    M  SG++ +      + +   ++    
Sbjct: 301 DAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETR 360

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               L    ++   K D  LY  +LA L +
Sbjct: 361 KLMVLYRAMIKDGYKPDDGLYQVLLAALAK 390



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 145/310 (46%), Gaps = 6/310 (1%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL--DTSMKVY 363
             +  M+   A+SGR D A +L   M++++  P    F +L+++  K+G L    ++++ 
Sbjct: 62  QVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELL 121

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            E++  G RP A  Y +LI + ++   LD A+ +++EM  +  RP+   +  ++  H + 
Sbjct: 122 HEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRC 181

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           GK   A  +F ++   GF P   TY+ LL   A  G V+   ++   +  AG R    TY
Sbjct: 182 GKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITY 241

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGS 542
             ++ +  K   +D+A  +  EM+ +G + D     VL+  + K   +  A + L  M  
Sbjct: 242 NTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMAD 301

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +G++        L  +  K+   + A+   +  VES  K D + Y  +L    R  +   
Sbjct: 302 AGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDE--- 358

Query: 603 ERHLMAILSA 612
            R LM +  A
Sbjct: 359 TRKLMVLYRA 368



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 138/596 (23%), Positives = 240/596 (40%), Gaps = 75/596 (12%)

Query: 238  YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            Y  +I    +    E +Y        SD  ++  S  V M     K   ++  E +    
Sbjct: 555  YQSIIYTCCRLGFPETAYQLMDDAARSDISLNILSCRVAMIEAYGKLKLWQQAENFVKGL 614

Query: 298  KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            K E  +D   +  +I + A+SG  + A  +F  M ++   P+      ++ ++   GRLD
Sbjct: 615  KQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLD 674

Query: 358  TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                V  E+Q    + S    + ++E++AKAG +   +++++ M+ AG+ PN  L+ ++I
Sbjct: 675  ELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMI 734

Query: 418  ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                 + +      +  +ME AGF P     + LL M+  +G  D  +++Y+S+  AGL 
Sbjct: 735  SLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLE 794

Query: 478  PGLSTYTALL-------------TLL----------------------AKRKLVDVAAKI 502
            P   TY  L+             TLL                       K KL + A  +
Sbjct: 795  PDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLL 854

Query: 503  LLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
              EM+T GY ++ S   ++M +Y    +   A   L  M   GI      +  L  S   
Sbjct: 855  FEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGT 914

Query: 562  NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ-------------------DEQN 602
            +   + A+ +L +   S  ++  + Y++VL   +R +                   D Q 
Sbjct: 915  SGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQV 974

Query: 603  ERHLMAILSATKHKAHAFL-------CGLFTGP----EQRKQPVLSFVREFFHGIDYELE 651
                +   S  +    A L       CG F  P     +R   + + V  F   +   LE
Sbjct: 975  WTSFIRAASLCEQTDDAILLLKSLQDCG-FDLPIRLLTERTSSLFTEVDSFLEKLG-TLE 1032

Query: 652  EGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGA 711
            + A+  FVN L + L    +   A  ++++A +  ++   I   +   W  D+R LS GA
Sbjct: 1033 DSASLNFVNALEDLLWAFERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLRKLSAGA 1092

Query: 712  ALIAVMHTLHRFRKRMLYYG-VVPRRIKLVTGP------TLKIVIAQMLSSVESPF 760
            AL+A+   L + +   L      P+ I LVTG       +L+  I   L  + SPF
Sbjct: 1093 ALVALTLWLDQMQDASLQGAPESPKSIVLVTGEGEYNMVSLRKTIRAYLLEMGSPF 1148



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 134/292 (45%), Gaps = 5/292 (1%)

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL--DTAL 395
           P+  +F +++    ++GR D + ++   M+     P    + +LI + AK+G L    AL
Sbjct: 59  PTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL 118

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            L  E+R AG RP+   +  +I + ++   LD A+++F +M  +   P   TY+ ++ +H
Sbjct: 119 ELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVH 178

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD- 514
              G+   A  ++  +   G +P   TY +LL   AK   V+   ++  E+   G+  D 
Sbjct: 179 GRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDG 238

Query: 515 VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
           ++ + ++ +Y K G +D AL     M + G   +      L +S  K      A  +LE 
Sbjct: 239 ITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEE 298

Query: 575 YVESAAKVDLVLYTSVLAHLVRC--QDEQNERHLMAILSATKHKAHAFLCGL 624
             ++  K  LV +++++    +   QD+        + S  K    A+L  L
Sbjct: 299 MADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVML 350



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 105/227 (46%), Gaps = 3/227 (1%)

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL--DI 428
           H P+  ++ +++  YA++G+ D A +L D MR     P+   F  +I + AKSG L   +
Sbjct: 57  HLPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGV 116

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+ +  ++ +AG  P   TY+ L+   +    +D A+ ++  M ++  RP L TY A+++
Sbjct: 117 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 176

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
           +  +      A  +  E+   G+  D V+ + +L  + K+G V+   R    +  +G R 
Sbjct: 177 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 236

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           +      +     K    + A  L +         D V YT ++  L
Sbjct: 237 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSL 283



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 102/487 (20%), Positives = 184/487 (37%), Gaps = 93/487 (19%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           +D    L +   A  +  Y P D  Y +L   L +  + D +  +  +M      N + +
Sbjct: 356 SDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVI 415

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
            S        L KA+ +       K+      + D +S   ++  +   G   K   + E
Sbjct: 416 SS-------ILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLE 468

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF---QEMKERNFRPSFNIFASLVDSMG 351
            + +   +      E  I  L K+G++  AI+ +   Q +K  +F    +++  L+  + 
Sbjct: 469 WIRQHVPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYEYLITYLE 528

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA----------------- 394
           +A     + +V+ +MQ  G  PS  +Y S+I +  + G  +TA                 
Sbjct: 529 EAELFPEACQVFCDMQFLGIVPSQKIYQSIIYTCCRLGFPETAYQLMDDAARSDISLNIL 588

Query: 395 ------------LRLWDEMR--IAGFRPNFG----LFTMIIESHAKSGKLDIAMSIFTDM 436
                       L+LW +    + G +   G    ++  +I ++A+SG  + A +IF  M
Sbjct: 589 SCRVAMIEAYGKLKLWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIM 648

Query: 437 ERAGFLPT-----------------------------------PSTYSCLLEMHASSGQV 461
            + G LPT                                    ST   +LE  A +G V
Sbjct: 649 IKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDV 708

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDV 520
              MK+YN M +AG  P +  Y  +++LL   K       ++ EM+  G+  D V  + +
Sbjct: 709 FEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTL 768

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN--------ALYESAK--- 569
           L++Y   G+ D  +     +  +G+  +      L     +N         LYE  K   
Sbjct: 769 LLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGL 828

Query: 570 -PLLETY 575
            P LE+Y
Sbjct: 829 TPKLESY 835


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 125/597 (20%), Positives = 233/597 (39%), Gaps = 86/597 (14%)

Query: 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF------------DGML---SLFDEM 223
           TS+ LF W   Q+ Y    + Y +L   L  + +F            +G++   SLF  +
Sbjct: 93  TSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISI 152

Query: 224 VHDSSKNGIS------------------LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
           + D  K G                     F +YN V++ L   +  +++   F  +L   
Sbjct: 153 MRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRK 212

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
                 ++ V+M  F        A  +   M K  C  +   Y+ +I SL+K  R++ A+
Sbjct: 213 IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEAL 272

Query: 326 KLFQEM-------------------------KE----------RNFRPSFNIFASLVDSM 350
           +L +EM                          E          R F P    +  L++ +
Sbjct: 273 QLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGL 332

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA-GFRPN 409
            K GR+D +  ++  +     +P   ++ +LI  +   G+LD A  +  +M  + G  P+
Sbjct: 333 CKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD 388

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              +  +I  + K G + +A+ +  DM   G  P   +Y+ L++     G++D A  + N
Sbjct: 389 VCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLN 448

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-G 528
            M++ GL+P    +  L++   K   +  A +I  EM   G   DV   + L+  + +  
Sbjct: 449 EMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVD 508

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
            + HAL  LR M S G+  N      L  + ++    + A+ L+   V   + +D + Y 
Sbjct: 509 EIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYN 568

Query: 589 SVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRK---QPVLSFVREFFHG 645
           S++  L R  +    R L   +    H      C +      R    +  + F +E    
Sbjct: 569 SLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEM--- 625

Query: 646 IDYELEEGAARYFV--NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAW 700
               +  G+    V  N L+N L   G+I     +++      + P  + F+  ++W
Sbjct: 626 ----VLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSW 678



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 177/433 (40%), Gaps = 20/433 (4%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           P+ ET  D +  + K   I +A K++N         R   R   + P D  Y  L + L 
Sbjct: 285 PDAETFNDVILGLCKFDRINEAAKMVN---------RMLIRG--FAPDDITYGYLMNGLC 333

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           +    D    LF    +   K  I +F   N +I       +L+ +      ++ S   +
Sbjct: 334 KIGRVDAAKDLF----YRIPKPEIVIF---NTLIHGFVTHGRLDDAKAVLSDMVTSYGIV 386

Query: 269 -DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            D  +YN L+  +  +GL   A E+   M    C  +  +Y +++    K G++D A  +
Sbjct: 387 PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNV 446

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             EM     +P+   F  L+ +  K  R+  +++++ EM   G +P    + SLI    +
Sbjct: 447 LNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 506

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
             ++  AL L  +M   G   N   +  +I +  + G++  A  +  +M   G      T
Sbjct: 507 VDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEIT 566

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L++    +G+VD A  L+  M   G  P   +   L+  L +  +V+ A +   EM 
Sbjct: 567 YNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMV 626

Query: 508 TMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G + D+   + L+  + + G ++  L   R + + GI  +      L     K     
Sbjct: 627 LRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVY 686

Query: 567 SAKPLLETYVESA 579
            A  LL+  +E  
Sbjct: 687 DACLLLDEGIEDG 699



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 3/255 (1%)

Query: 321 LDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +  +++LF     +N +R SF+++  L+  +G  G   T  ++ ++M+  G      +++
Sbjct: 91  VSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFI 150

Query: 380 SLIESYAKAGKLDTALRLWDEMR-IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
           S++  Y KAG      RL  EMR +    P F  + +++E         +A ++F DM  
Sbjct: 151 SIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLS 210

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
               PT  T+  +++   +  ++DSA+ L   MT  G  P    Y  L+  L+K   V+ 
Sbjct: 211 RKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNE 270

Query: 499 AAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A ++L EM  MG   D    +DV++   K   ++ A + +  M   G   ++     L  
Sbjct: 271 ALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMN 330

Query: 558 SCMKNALYESAKPLL 572
              K    ++AK L 
Sbjct: 331 GLCKIGRVDAAKDLF 345



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 111/237 (46%), Gaps = 3/237 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + +F EM     K  +  F   N +I  L + D+++ +    + ++      +T +YN L
Sbjct: 479 VEIFREMPRKGCKPDVYTF---NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 535

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  FL +G   +A ++   M      LD  TY  +I  L ++G +D A  LF++M     
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            PS      L++ + ++G ++ +++   EM   G  P    + SLI    +AG+++  L 
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           ++ +++  G  P+   F  ++    K G +  A  +  +    GF+P   T+S LL+
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQ 712



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 126/303 (41%), Gaps = 3/303 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L D   +    D   ++ +EM  D  K        +N +I    K  ++  +
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTV---GFNCLISAFCKEHRIPEA 478

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F+++    CK D  ++N L++          A  +   M       +  TY  +I +
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             + G +  A KL  EM  +        + SL+  + +AG +D +  ++ +M   GH PS
Sbjct: 539 FLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPS 598

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
                 LI    ++G ++ A+    EM + G  P+   F  +I    ++G+++  +++F 
Sbjct: 599 NISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFR 658

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            ++  G  P   T++ L+      G V  A  L +     G  P   T++ LL  +  ++
Sbjct: 659 KLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQE 718

Query: 495 LVD 497
            +D
Sbjct: 719 TLD 721


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 167/378 (44%), Gaps = 4/378 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
            FD M+    K  +S    Y  +I   A    L   +     ++++    D   +N+  +
Sbjct: 326 FFDSMIRKGIKPKVS---TYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFS 382

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +   G+  KA +I+  M +   S +   Y  +I +L K GR+D A   F +M      P
Sbjct: 383 AYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTP 442

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +  +F SLV  +    + + + ++  EM   G  P+A  + +LI +    G++    RL 
Sbjct: 443 NIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLI 502

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           D M   G RP+   +T +I  +  +G+ D A  +F  M   G  PT  TY+ LL  + S+
Sbjct: 503 DLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSA 562

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
            ++D A  L+  M   G+ PG+ TY  +L  L + K    A ++ L M   G   D+   
Sbjct: 563 SRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTY 622

Query: 519 DVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           ++++  + K   VD A +  + + S G++ N      +  + +K    E A  L      
Sbjct: 623 NIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPA 682

Query: 578 SAAKVDLVLYTSVLAHLV 595
           +    ++V Y  V  +L+
Sbjct: 683 NGLVPNVVTYRLVAENLI 700



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 158/399 (39%), Gaps = 1/399 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y +L   L   +  +  L L   M  D  +       +Y+ VI       +++ 
Sbjct: 158 MPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDK 217

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
            Y  F +++D     D  +Y  ++       L  +A  +++ M       +  TY  +I 
Sbjct: 218 PYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIH 277

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
                G+    +++ +EM  R  +P    + SL++ + K GR   +   +  M   G +P
Sbjct: 278 GYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKP 337

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  LI  YA  G L       D M   G  P+  +F +   ++AK G +D AM IF
Sbjct: 338 KVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIF 397

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M + G  P    Y  L++     G+VD A   +N M + G+ P +  + +L+  L   
Sbjct: 398 NKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTV 457

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIV 552
              + A +++ EM   G   +    + L+  + + G V    R +  M   G+R + F  
Sbjct: 458 DKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSY 517

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             L          + A+ + +  V        V Y ++L
Sbjct: 518 TPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLL 556



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 100/491 (20%), Positives = 180/491 (36%), Gaps = 78/491 (15%)

Query: 208 NESRDFDGMLSLFDEMVHDSSKNGISLF--------------------SAYNRVIQ---- 243
           + S   D  L LFDE++H +    +  F                    S +NR+++    
Sbjct: 25  SRSLGLDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSD 84

Query: 244 --------------YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM------------ 277
                            +   LE  +  F  +L +  ++D  + N L+            
Sbjct: 85  KVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEA 144

Query: 278 --------------------TLFL----NKGLPYKAFEIYESMEKGE---CSLDGSTYEL 310
                               T+ L    N+    +A E+   M       C  +  +Y +
Sbjct: 145 MDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSI 204

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I      G++D    LF EM +R   P    + +++D + KA   D +  V+ +M   G
Sbjct: 205 VINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNG 264

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
            +P+   Y  LI  Y   GK    +++ +EM   G +P+   +  ++    K+G+   A 
Sbjct: 265 FKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREAR 324

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
             F  M R G  P  STY  L+  +A+ G +       + M   GL P    +    +  
Sbjct: 325 FFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAY 384

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNN 549
           AK  ++D A  I  +M+  G S +V     L+    K G VD A      M + G+  N 
Sbjct: 385 AKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNI 444

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609
            +   L         +E A+ L+   ++     + V + +++ +L         R L+ +
Sbjct: 445 VVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDL 504

Query: 610 LSATKHKAHAF 620
           +     +  AF
Sbjct: 505 MEHVGVRPDAF 515



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 118/266 (44%), Gaps = 1/266 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  SY  L++ +   G   +A ++++ M     S    TY  ++     + R+D A  LF
Sbjct: 513 DAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLF 572

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM  +   P    + +++  + +  R   + ++Y+ M   G +     Y  ++    K+
Sbjct: 573 REMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKS 632

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
             +D A +++  +   G + N   FT++I +  K G+ + AM +F  +   G +P   TY
Sbjct: 633 NCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTY 692

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             + E     G ++    L+++M   G  P      AL+  L  R  +  A   L ++  
Sbjct: 693 RLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDE 752

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHA 533
             +SV+ S + +LM ++  D    HA
Sbjct: 753 RNFSVEASTTSLLMSIFTSDEYQHHA 778



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 87/200 (43%), Gaps = 3/200 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y  L      +   D    LF EM+      G+     YN ++  L +  +   +
Sbjct: 547 PTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVV---TYNTILHGLFQTKRFSEA 603

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              +  +++S  K D  +YN+++          +AF++++S+      L+  T+ +MI +
Sbjct: 604 KELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGA 663

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K GR + A+ LF  +      P+   +  + +++ + G L+    ++  M+  G  P+
Sbjct: 664 LLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPN 723

Query: 375 APMYVSLIESYAKAGKLDTA 394
           + M  +L+      G +  A
Sbjct: 724 SQMLNALVRRLLHRGDISRA 743


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 158/338 (46%), Gaps = 2/338 (0%)

Query: 256 CCFK-KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           C F  ++LD+    + + +NVLM   +  G    A  +++ M+         ++  MI  
Sbjct: 225 CAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISG 284

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           + ++G LD A  L + M E    P    + +L+  + + GR++ +  V+ +M G G +P+
Sbjct: 285 MCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPN 344

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           A ++  LI+++ K G  +T L L  EMR  G RP+   +  I+    ++  L  A  I  
Sbjct: 345 AVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVV 404

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M  AG  P   TY+ L++ +    ++D AM++  +M + G+     TYTAL++ L+K  
Sbjct: 405 EMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAG 464

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
               A ++L EM   G   D  + + V+  + + G V   LR L+ M + G +       
Sbjct: 465 RSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYN 524

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +     K    ++A  LL   +      D + Y  +L
Sbjct: 525 VIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILL 562



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 172/360 (47%), Gaps = 4/360 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N +++ L +  +L  +   F ++     +    S+N +++     G    A  ++  M 
Sbjct: 243 FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMS 302

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +   + D  TY  +I  L + GR++ A  +F++M  R  +P+  +F  L+D+  K G  +
Sbjct: 303 EAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAE 362

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           T ++++ EM+  G RP A  Y +++    +A  L +A  +  EMR AG RP+   +T +I
Sbjct: 363 TMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLI 422

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           + + K  +LD+AM I  +M   G      TY+ L+   + +G+   A ++   M  AGL 
Sbjct: 423 DGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLE 482

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P  +TYT ++    ++  V    ++L EM+  G    V   +V+M  + K G + +A   
Sbjct: 483 PDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADML 542

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M + G+  ++     L +   K+        + E         DL +YTS++  +V+
Sbjct: 543 LNAMINIGVSPDDITYNILLDGHCKHG---KVTDIEELKSAKGTVPDLGVYTSIVGEIVK 599



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 147/316 (46%), Gaps = 7/316 (2%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           ++FDEM    S+       ++N +I  + +A  L+ +    +++ ++    D  +Y  L+
Sbjct: 261 NVFDEM---QSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALI 317

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                 G    A  ++E M       +   + ++I +  K G  +  ++L +EM+ER  R
Sbjct: 318 QGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVR 377

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P    + ++V+ + +A  L ++  + +EM+  G RP    Y +LI+ Y K  +LD A+ +
Sbjct: 378 PDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEI 437

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
              M   G   +   +T +I   +K+G+   A  +  +M  AG  P  +TY+ +++    
Sbjct: 438 KQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCR 497

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G V + ++L   M + G +PG+ TY  ++    K   +  A  +L  M  +G S D   
Sbjct: 498 KGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDIT 557

Query: 518 SDVLMVYIKDGSVDHA 533
            ++L+    DG   H 
Sbjct: 558 YNILL----DGHCKHG 569



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 131/285 (45%), Gaps = 1/285 (0%)

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A   + ++ +    P   +F  L+  + + G L ++  V+ EMQ  G R +   + ++I 
Sbjct: 224 ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMIS 283

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
              +AG LD A  L   M  AG  P+   +  +I+   + G+++ A  +F  M   G  P
Sbjct: 284 GMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKP 343

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
               ++ L++ H   G  ++ ++L+  M   G+RP   TY A++  L + + +  A+ I+
Sbjct: 344 NAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIV 403

Query: 504 LEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
           +EM++ G   D V+ + ++  Y K+  +D A+   + M + G+  +      L     K 
Sbjct: 404 VEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKA 463

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
                A+ +L   +E+  + D   YT V+    R  D +    L+
Sbjct: 464 GRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLL 508


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 124/531 (23%), Positives = 228/531 (42%), Gaps = 66/531 (12%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           D +  L LFDE+V       +++FS    +I++ +K   +E +   + ++     +    
Sbjct: 342 DVNSALRLFDEVVEVGVTPNVAIFSV---LIEWCSKIGNVEKANELYTRMKCMGLQPTVF 398

Query: 272 SYNVLMTLFLNKGLPYKAFEIYE-SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
             N L+  F  + L   A+ + + ++E G  S+   TY +++  L + G+++ A  L+ +
Sbjct: 399 ILNFLLKGFRKQNLLENAYLLLDGAVENGIASV--VTYNIVLLWLCELGKVNEACNLWDK 456

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M  +   PS   +  ++    K G +D + +V   +   G +P+A  Y  L+E   K G 
Sbjct: 457 MIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGD 516

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
            + A  ++D+M  AG  P    F  II    K G++  A        +  F+PT  TY+C
Sbjct: 517 CEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNC 576

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           +++ +   G +DSA  +Y  M  + + P + TYT+L+    K   +D+A K+  +MK  G
Sbjct: 577 IIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKG 636

Query: 511 YSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN-ALYESA 568
             +D++    L+  + K   +++A ++   +   G+ T N IV  +  S  +N    E+A
Sbjct: 637 LELDITVYATLIAGFCKMQDMENACKFFSKLLEVGL-TPNTIVYNIMISAYRNLNNMEAA 695

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGP 628
             L +  + +    DL +YTS++  L+                                 
Sbjct: 696 LNLHKEMINNKIPCDLKIYTSLIDGLL--------------------------------- 722

Query: 629 EQRKQPVLSFVREFF-----HGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAY 683
              K+  LSF  + +      GI  ++      +  NVL+N L   GQ+  A  + K   
Sbjct: 723 ---KEGKLSFALDLYSEMLCRGIVPDI------FMYNVLINGLCNHGQLENAGKILKEMD 773

Query: 684 ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVP 734
            N + P  ++++  IA      NL              R    ML  G+VP
Sbjct: 774 GNNITPTVLLYNTLIAGHFKEGNL----------QEAFRLHDEMLDKGLVP 814



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 101/476 (21%), Positives = 210/476 (44%), Gaps = 30/476 (6%)

Query: 239 NRVIQYL----AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           +RV  YL     +A+K+  +  CF+ +L+          NVL+T  + + +   A  +++
Sbjct: 152 SRVFNYLLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFD 211

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M +     D  T ++++ +  K G+   A + F +   R  +     ++ ++ ++ +  
Sbjct: 212 EMAERRIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGS 271

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            LD + K+    +  G  PS   Y ++I +  + G    ALRL DEM  +    N  + T
Sbjct: 272 DLDLASKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVAT 331

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+ +   G ++ A+ +F ++   G  P  + +S L+E  +  G V+ A +LY  M   
Sbjct: 332 SLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCM 391

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534
           GL+P +     LL    K+ L++ A  +L      G +  V+ + VL+   + G V+ A 
Sbjct: 392 GLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEAC 451

Query: 535 R-WLRFMGS----SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
             W + +G     S +  N+ I+    + CM     + A  ++   +ES  K + + YT 
Sbjct: 452 NLWDKMIGKGITPSLVSYNHMILGHCKKGCM-----DDAHEVMNGIIESGLKPNAITYTI 506

Query: 590 VLAHLVR---CQDEQN--ERHLMAILSATKHKAHAFLCGL--FTGPEQRKQPVLSFVREF 642
           ++    +   C+   N  ++ + A +  T +  ++ + GL       + +  + +F+++ 
Sbjct: 507 LMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQS 566

Query: 643 FHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHI 698
           F                N +++  V  G I+ A  V++    +++ P  I +   I
Sbjct: 567 FI---------PTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLI 613



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 149/333 (44%), Gaps = 3/333 (0%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +S   P    Y +L +   +  D +   ++FD+MV   +   +     +N +I  L K  
Sbjct: 494 ESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMV---AAGIVPTDYTFNSIINGLCKVG 550

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           ++  +       +       + +YN ++  ++ +G    A  +Y  M + E S +  TY 
Sbjct: 551 RVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYT 610

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I    KS ++D A+K+  +MK +       ++A+L+    K   ++ + K + ++   
Sbjct: 611 SLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEV 670

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+  +Y  +I +Y     ++ AL L  EM       +  ++T +I+   K GKL  A
Sbjct: 671 GLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFA 730

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           + ++++M   G +P    Y+ L+    + GQ+++A K+   M    + P +  Y  L+  
Sbjct: 731 LDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAG 790

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             K   +  A ++  EM   G   D +  D+L+
Sbjct: 791 HFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILV 823



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 6/243 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
           D++ S++R   R S   P    Y  L +   +S   D  L + D+M     + G+ L  +
Sbjct: 588 DSAESVYREMCR-SEISPNVITYTSLINGFCKSNKMDLALKMHDDM----KRKGLELDIT 642

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    K   +E +   F K+L+     +T  YN++++ + N      A  +++ M
Sbjct: 643 VYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEM 702

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
              +   D   Y  +I  L K G+L  A+ L+ EM  R   P   ++  L++ +   G+L
Sbjct: 703 INNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQL 762

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + K+  EM G    P+  +Y +LI  + K G L  A RL DEM   G  P+   + ++
Sbjct: 763 ENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDIL 822

Query: 417 IES 419
           +  
Sbjct: 823 VNG 825



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 151/381 (39%), Gaps = 18/381 (4%)

Query: 84  EKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGF--DDHVMVGGIKKPFLNASAVAKIVEV 141
           E CN W + I        V Y    +   + G   D H ++ GI +  L  +A+   + +
Sbjct: 449 EACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILM 508

Query: 142 VNRWKWGP-----ELETQLDKLQFVPKMVH----ITQALKVINDSDTSLSLFRWAKRQSW 192
              +K G       +  Q+     VP        I    KV   S+    L  + K+   
Sbjct: 509 EGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQS-- 566

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKL 251
           ++P    Y  + D   +    D   S++ EM     S N I+    Y  +I    K++K+
Sbjct: 567 FIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVIT----YTSLINGFCKSNKM 622

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           +++      +     ++D   Y  L+  F        A + +  + +   + +   Y +M
Sbjct: 623 DLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIM 682

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I +      ++AA+ L +EM          I+ SL+D + K G+L  ++ +Y EM   G 
Sbjct: 683 ISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGI 742

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P   MY  LI      G+L+ A ++  EM      P   L+  +I  H K G L  A  
Sbjct: 743 VPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFR 802

Query: 432 IFTDMERAGFLPTPSTYSCLL 452
           +  +M   G +P  +TY  L+
Sbjct: 803 LHDEMLDKGLVPDDTTYDILV 823


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 162/358 (45%), Gaps = 8/358 (2%)

Query: 252 EMSYCCFKKVLDSDCKIDTQ----SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
           E + C  +KV D   K   +    S+N L+  +   G     F +   MEK     D  T
Sbjct: 253 EGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFT 312

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  +I +L K  ++D A +LF EM ER   P+  IF +L+    + G++D   + Y +M 
Sbjct: 313 YSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKML 372

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G +P   +Y +L+  + K G L  A  + D M   G RP+   +T +I+   + G +D
Sbjct: 373 SKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVD 432

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+ I  +M++ G       +S L+      G+V  A +    M  AG++P   TYT ++
Sbjct: 433 TALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMM 492

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIR 546
               K+       K+L EM++ G+  +V   +VL+  + K G + +A   L  M + G+ 
Sbjct: 493 DAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVV 552

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
            ++     L E   ++A   +A    +   E     DL  Y S++  L R   +   R
Sbjct: 553 PDDITYNTLLEGHHRHA---NASKHYKQKPEIGIVADLASYKSLVNELYRASKDHRNR 607



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 142/302 (47%), Gaps = 1/302 (0%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
            + +++    K G +  A K+F E+ +R+ RP+   F +L++   K G LD   ++   M
Sbjct: 242 VFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHM 301

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +    RP    Y +LI +  K  K+D A RL+ EM   G  PN  +FT +I  H+++G++
Sbjct: 302 EKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQI 361

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           D+    +  M   G  P    Y+ L+     +G + +A  + + M   GLRP   TYT L
Sbjct: 362 DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTL 421

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           +    +   VD A +I  EM   G  +D V  S ++    K+G V  A R LR M  +G+
Sbjct: 422 IDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGM 481

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
           + ++     + ++  K    ++   LL+         ++V Y  +L  L +    +N   
Sbjct: 482 KPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADM 541

Query: 606 LM 607
           L+
Sbjct: 542 LL 543



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 164/359 (45%), Gaps = 13/359 (3%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + ++LD+   ++   +N+LM  F  +G    A ++++ + K        ++  +I    K
Sbjct: 228 YMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCK 287

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G LD   +L   M++   RP    +++L++++ K  ++D + +++ EM   G  P+  +
Sbjct: 288 VGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVI 347

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           + +LI  +++ G++D     + +M   G +P+  L+  ++    K+G L  A +I   M 
Sbjct: 348 FTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI 407

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           R G  P   TY+ L++     G VD+A+++   M   G+      ++AL+  + K   V 
Sbjct: 408 RRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVI 467

Query: 498 VAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A + L EM   G    DV+ + ++  + K G      + L+ M S G   N      L 
Sbjct: 468 DAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLL 527

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
               K    ++A  LL+  +      D + Y ++L        E + RH     +A+KH
Sbjct: 528 NGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLL--------EGHHRH----ANASKH 574



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 128/333 (38%), Gaps = 36/333 (10%)

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G +   I+ F+  ++ NF        +L+D M K     T    YME+   G   +  ++
Sbjct: 184 GFIPDVIQCFRLSRKHNFVVPIRGCGNLLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVF 243

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI---------- 428
             L+  + K G +  A +++DE+     RP    F  +I  + K G LD+          
Sbjct: 244 NILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEK 303

Query: 429 -------------------------AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
                                    A  +F +M   G +P    ++ L+  H+ +GQ+D 
Sbjct: 304 SRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDL 363

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLM 522
             + Y  M S GL+P +  Y  L+    K   +  A  I+  M   G   D V+ + ++ 
Sbjct: 364 MKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLID 423

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            + + G VD AL   + M  +GI  +      L     K      A+  L   + +  K 
Sbjct: 424 GFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKP 483

Query: 583 DLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           D V YT ++    +  D Q    L+  + +  H
Sbjct: 484 DDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGH 516



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 104/256 (40%), Gaps = 4/256 (1%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +  AL   N  D +  LF +   +   +P D  +  L    + +   D M   + +M+  
Sbjct: 316 LINALCKENKMDGAHRLF-YEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSK 374

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
             +  I L   YN ++    K   L  +      ++    + D  +Y  L+  F   G  
Sbjct: 375 GLQPDIVL---YNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDV 431

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
             A EI + M++    LD   +  +I  + K GR+  A +  +EM     +P    +  +
Sbjct: 432 DTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMM 491

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +D+  K G   T  K+  EMQ  GH P+   Y  L+    K G++  A  L D M   G 
Sbjct: 492 MDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGV 551

Query: 407 RPNFGLFTMIIESHAK 422
            P+   +  ++E H +
Sbjct: 552 VPDDITYNTLLEGHHR 567


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 149/325 (45%), Gaps = 1/325 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +N+  + +   G+  KA +I+  M +   S D  +Y  +I +L K GR+D A   F +M 
Sbjct: 33  FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 92

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P+  +F+SLV  +    + +   +++ EM   G  P+   + +++ +  K G++ 
Sbjct: 93  NEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVM 152

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
              RL D +   G RP+   +  +I+ H  +G +D A  +   M   G  P   +Y+ LL
Sbjct: 153 EGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLL 212

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +  +G++DSA  L+  M S G+ PG+ TY  +L  L + K    A ++ L M   G  
Sbjct: 213 HGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTK 272

Query: 513 VDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
             + + + +L    K   VD A +  + + S G++ N      +  + +K    E A  L
Sbjct: 273 WGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDL 332

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
                 +    D+V Y  V  +L+ 
Sbjct: 333 FAAIPANGLVPDVVTYRVVAENLIE 357



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 132/297 (44%), Gaps = 11/297 (3%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           M+      G L     L   M      P+ +IF     +  K G +D +M ++ +M+  G
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P A  Y +LI++  K G++D A   +++M   G  PN  +F+ ++       K +   
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +F +M   G  P    ++ +L      G+V    +L +S+   G+RP + +Y  L+   
Sbjct: 121 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGH 180

Query: 491 AKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR--- 546
                +D A+K+L  M ++G   +  S + +L  Y K G +D A    R M S+GI    
Sbjct: 181 CLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGV 240

Query: 547 -TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR--CQDE 600
            T N I+  LF++      +  AK L    + S  K  +  Y ++L  L +  C DE
Sbjct: 241 VTYNTILHGLFQT----KRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDE 293



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 159/389 (40%), Gaps = 34/389 (8%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++ +F    RQ    P    Y  L D L +    D     F++M+++     I +FS+
Sbjct: 47  DKAMDIFN-KMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSS 105

Query: 238 YNRVIQYLAKADKLEMSY------------CCFKKVLDSDCK------------------ 267
               +  + K +K+E  +              F  +L + CK                  
Sbjct: 106 LVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMG 165

Query: 268 --IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
              D  SYN L+      G   +A ++ E M       +  +Y  ++    K+GR+D+A 
Sbjct: 166 VRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAY 225

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            LF++M      P    + +++  + +  R   + ++Y+ M   G +     Y +++   
Sbjct: 226 SLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGL 285

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K+  +D A +++  +   G + N   FT++I +  K G+ + AM +F  +   G +P  
Sbjct: 286 CKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPDV 345

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY  + E     G ++    L+++M   G  P      AL+  L  R  +  A   L +
Sbjct: 346 VTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSK 405

Query: 506 MKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           +    +SV+ S + +L+ ++  D    HA
Sbjct: 406 LDERNFSVEASTTSMLISIFSSDEYQHHA 434


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 142/294 (48%), Gaps = 3/294 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + L +EMV  +    +     Y  ++  L K  K++ +      +L +  K D  +YN L
Sbjct: 502 IGLLNEMVLKTINPDVR---TYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTL 558

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +L      KA  ++ +M     + D  TY ++I    KS  +D A+ LF+EM ++N 
Sbjct: 559 MNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNM 618

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    ++SLVD + K+GR+     +  EM+  G       Y SLI+   K G LD A+ 
Sbjct: 619 VPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIA 678

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+++M+  G RPN   FT++++   K G+L  A  +F D+   G+      Y+ ++  H 
Sbjct: 679 LFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHC 738

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             G ++ A+ + + M   G  P   T+  ++  L K+   D A K+L +M   G
Sbjct: 739 KQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 179/426 (42%), Gaps = 48/426 (11%)

Query: 213 FDGMLSLFDEMVHDSSKNGIS-----------LFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           F+ +L  F +M H S+   +S           LF+  N +I       ++   +    K+
Sbjct: 310 FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFT-LNILINCFCHMGQITFGFSVLAKI 368

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           L       T + N L+     KG   KA   ++ +      L+  +Y  +I  + K G  
Sbjct: 369 LKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDT 428

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             AIKL +++  R  +P+  ++++++D++ K   +  +  ++ EM   G       Y +L
Sbjct: 429 RGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTL 488

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I  +   GKL  A+ L +EM +    P+   +T+++++  K GK+  A S+   M +A  
Sbjct: 489 IYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACV 548

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   TY+ L+  +    +V  A  ++N+M+  G+ P + TYT L+    K K+VD A  
Sbjct: 549 KPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALN 608

Query: 502 ILLEM-------KTMGYSVDVSA-----------------------SDVLMV------YI 525
           +  EM        T+ YS  V                         +DV+          
Sbjct: 609 LFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLC 668

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           K+G +D A+     M   GIR N F    L +   K    + A+ + +  +     +D+ 
Sbjct: 669 KNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVY 728

Query: 586 LYTSVL 591
           +Y  ++
Sbjct: 729 IYNVMI 734



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 143/331 (43%), Gaps = 40/331 (12%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K + + Y+ ++       L  +A+ ++  M     S D  TY  +I      G+L  AI 
Sbjct: 444 KPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIG 503

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           L  EM  +   P    +  LVD++GK G++  +  V   M     +P    Y +L+  Y 
Sbjct: 504 LLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYL 563

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
              ++  A  +++ M + G  P+   +T++I    KS  +D A+++F +M +   +P   
Sbjct: 564 LVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTV 623

Query: 447 TYSCLLEMHASSGQV-----------------------------------DSAMKLYNSM 471
           TYS L++    SG++                                   D A+ L+N M
Sbjct: 624 TYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKM 683

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSV 530
              G+RP   T+T LL  L K   +  A ++  ++ T GY +DV   +V++  + K G +
Sbjct: 684 KDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLL 743

Query: 531 DHALRWLRFMGSSGIRTN----NFIVRQLFE 557
           + AL  L  M  +G   N    + I+  LF+
Sbjct: 744 EEALTMLSKMEENGCIPNAVTFDIIINALFK 774



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 102/208 (49%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y +L+  F    +  +A  +++ M +     D  TY  ++  L KSGR+     L 
Sbjct: 586 DVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLI 645

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM++R        + SL+D + K G LD ++ ++ +M+  G RP+   +  L++   K 
Sbjct: 646 DEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKG 705

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+L  A  ++ ++   G+  +  ++ ++I  H K G L+ A+++ + ME  G +P   T+
Sbjct: 706 GRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTF 765

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGL 476
             ++       + D A KL   M + GL
Sbjct: 766 DIIINALFKKDENDKAEKLLRQMIARGL 793



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 119/254 (46%)

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
           +S     K+L      DT + N L+     KG   +A   ++ +      L+  +Y  +I
Sbjct: 46  VSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLI 105

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             + + G   AAIK  +++  R  +P+  ++ +++D++ K   +  +  ++ EM   G  
Sbjct: 106 NGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGIS 165

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
            +   Y +LI  +   GKL  AL L + M +    PN   + +++++  K GK+  A S+
Sbjct: 166 ANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSV 225

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M +A       TYS L++ +    +V  A  ++N+M+  G+ P + +Y  ++    K
Sbjct: 226 LAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCK 285

Query: 493 RKLVDVAAKILLEM 506
            K VD A  +  EM
Sbjct: 286 IKRVDKALNLFKEM 299



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 6/244 (2%)

Query: 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFS------AYNRVIQYLAKADKLEMSYCCF 258
           DV   +   +G L +++        N +SL         Y  +I    K+  ++ +   F
Sbjct: 551 DVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLF 610

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           K++   +   DT +Y+ L+      G     +++ + M       D  TY  +I  L K+
Sbjct: 611 KEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKN 670

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G LD AI LF +MK++  RP+   F  L+D + K GRL  + +V+ ++   G+     +Y
Sbjct: 671 GHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIY 730

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             +I  + K G L+ AL +  +M   G  PN   F +II +  K  + D A  +   M  
Sbjct: 731 NVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIA 790

Query: 439 AGFL 442
            G L
Sbjct: 791 RGLL 794



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 144/355 (40%), Gaps = 2/355 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  L K   +  +Y  F ++       +  +Y+ L+  F   G   +A  +   M 
Sbjct: 136 YNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMV 195

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + +  TY +++ +L K G++  A  +   M +   + +   +++L+D       + 
Sbjct: 196 LKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVK 255

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  V+  M   G  P    Y  +I  + K  ++D AL L+ EM ++ F P    F  I+
Sbjct: 256 KAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQ-FNKIL 314

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +S AK      A+S+   +E  G  P   T + L+      GQ+     +   +   G  
Sbjct: 315 DSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYP 374

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P   T   L+  L  +  V  A     ++   G+ ++ VS + ++    K G    A++ 
Sbjct: 375 PSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKL 434

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           LR +     + N  +   + ++  K  L   A  L           D+V Y++++
Sbjct: 435 LRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 489


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 151/324 (46%), Gaps = 1/324 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +N+  + +   G+  KA +I+  M +   S D  +Y  +I +L K GR+D A   F +M 
Sbjct: 381 FNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 440

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P   +F+SLV  +    + +   +++ EM   G  P+   + +++ +  K G++ 
Sbjct: 441 NEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVM 500

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
              RL D +   G RP+   +  +I+ H  +G +D A  +   M   G  P   +Y+ LL
Sbjct: 501 EGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLL 560

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +  +G++DSA   +  M S G+ PG+ TY  +L  L + K    A ++ L M   G  
Sbjct: 561 HGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTK 620

Query: 513 VDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D+   ++++  + K   VD A++  + + S G++ N      +  + +K    E A  L
Sbjct: 621 WDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDL 680

Query: 572 LETYVESAAKVDLVLYTSVLAHLV 595
                 +    ++V Y  V+ +L+
Sbjct: 681 FAAIPANGLVQNVVTYRLVVENLI 704



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 170/393 (43%), Gaps = 4/393 (1%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++L  + NE R  +  L L   M  D   +      +Y+ VI       +++  Y  F +
Sbjct: 170 ILLKGLCNEKRAEEA-LELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLE 228

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           ++D     D  +Y  ++       L  +A  +++ M       +  TY  +I      G+
Sbjct: 229 MMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGK 288

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
               +++ +EM     +P+   + SL++ + K GR   +   +  M G G +PS   Y  
Sbjct: 289 WKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGI 348

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           ++  YA  G L     L + M   G  PN  +F +   ++AK G +D AM IF  M + G
Sbjct: 349 MLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQG 408

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   +Y  L++     G+VD A   +N M + G+ P +  +++L+  L      +   
Sbjct: 409 LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVE 468

Query: 501 KILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES- 558
           ++  EM  +G   ++   + ++  + K+G V    R +  +   G+R +      L +  
Sbjct: 469 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGH 528

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           C+   + E++K LLE  V    K D   Y ++L
Sbjct: 529 CLAGTIDEASK-LLEGMVSVGLKPDSFSYNTLL 560



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/486 (19%), Positives = 183/486 (37%), Gaps = 64/486 (13%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++ +F    RQ    P    Y  L D L +    D     F++M+++     I +FS+
Sbjct: 395 DKAMDIFN-KMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSS 453

Query: 238 YNRVIQYLAKADKLEMSY------------CCFKKVLDSDCK------------------ 267
               +  + K +K+E  +              F  +L + CK                  
Sbjct: 454 LVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMG 513

Query: 268 --IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
              D  SYN L+      G   +A ++ E M       D  +Y  ++    K+GR+D+A 
Sbjct: 514 VRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAY 573

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
             F++M      P    + +++  + +  R   + ++Y+ M   G +     Y  ++   
Sbjct: 574 SHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGL 633

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K+  +D A++++  +   G + N   F ++I +  K G+ + AM +F  +   G +   
Sbjct: 634 CKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNV 693

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY  ++E     G ++    L+++M   G  P      AL+  L  R  +  A   L +
Sbjct: 694 VTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSK 753

Query: 506 MKTMGYSVDVSASDVLM-----------------------------VYIKDGSVDHALRW 536
           +    +SV+ S + +L+                             +  K   +D A   
Sbjct: 754 LDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSL 813

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            R M   G+  +      +     +   +  AK L  + + S  ++++  Y  +L  L +
Sbjct: 814 FREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCK 873

Query: 597 --CQDE 600
             C DE
Sbjct: 874 SNCVDE 879



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 141/325 (43%), Gaps = 8/325 (2%)

Query: 214  DGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            +G L  FD +     KNG +  S   N +++ L     +  +     K+ + +  ++  +
Sbjct: 706  EGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEAST 765

Query: 273  YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
             ++L+++F +    + A    +S+ K    L+ +    +I    K+ R+D A  LF+EM 
Sbjct: 766  TSMLISIFSSDEYQHHA----KSLPKKYRILNEANSSALIK---KARRIDDAYSLFREML 818

Query: 333  ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
             +   P    + +++  + + GR   + ++Y+ M     + +   Y  ++    K+  +D
Sbjct: 819  MKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVD 878

Query: 393  TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             A +++  +   G + N   F ++I +  K G+ + AM +F  +   G +P   TY  + 
Sbjct: 879  EAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVA 938

Query: 453  EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
            E     G ++    L+ +M  +G         AL+  L +R  +  A   L ++    +S
Sbjct: 939  ENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKNFS 998

Query: 513  VDVSASDVLMVYIKDGSVDHALRWL 537
            ++ S +  L+     G   H  + L
Sbjct: 999  LEASTTSELISLFSRGEYQHHAKSL 1023


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 183/405 (45%), Gaps = 11/405 (2%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFD---GMLSLFDEMVHDSSKNGISLFS 236
           +   F WA  Q  Y    + Y  + D+L + + FD   G++S  DE+       G+   +
Sbjct: 143 AFGFFMWAGAQEGYRHSADSYNSMVDILGKFKQFDLMWGLISQMDEI------GGLVSLA 196

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
              +V++ LA A +   +   F K+       DT + NVL+     +    +A   ++ +
Sbjct: 197 TMTKVMRRLAGASRWTDAIDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQEL 256

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +G    D S++  ++    K+  ++ A  + +EM+E  F+PS   + SL+++       
Sbjct: 257 -RGSVPPDESSFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDF 315

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            T   +  EM+  G  P+   Y  ++ +  KAG+   AL ++D++R  G  P+   +  +
Sbjct: 316 QTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSL 375

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    ++G+L+ A S+   M   G  PT +T++ L+       Q ++A+K+   M     
Sbjct: 376 IYILGRAGRLEDANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSC 435

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +P + TYT LL L  KR+ + V   ++  M     + D S   +L+ ++ ++G    +  
Sbjct: 436 KPDIKTYTPLLKLCCKRQWIKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGKPAQSCL 495

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +L  M   G          + E   K  L+ + K +    +++AA
Sbjct: 496 FLEEMVLKGFAPKKETFDLVAEKLDKANLHSAKKKIQLLTLQAAA 540


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 197/446 (44%), Gaps = 8/446 (1%)

Query: 163 KMVHITQALKVINDSDTSLSLFRW-AKRQSWYVPGDECYVMLFDVLNE-SRDFDGMLSLF 220
           ++ +IT   K  ++ D+   +  W A +   Y      Y  + D L +  R F+  L +F
Sbjct: 425 RVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA-LEMF 483

Query: 221 DEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           DEM     K  +    +YN +I    KAD+   +   FK +     K +  ++ + +  +
Sbjct: 484 DEM---KQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYY 540

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   KA + YE M+      D      ++  LAKSGRL  A ++F E+K     P  
Sbjct: 541 GKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDT 600

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             +  ++    KA + D ++K++ +M      P      SLI++  KAG+ D A R++ +
Sbjct: 601 ITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQ 660

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           ++     P  G +  ++    + GK+   M +  +M  + + P   TY+ +L+    +G 
Sbjct: 661 LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGA 720

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           V+ A+ +  SMT+ G  P LS+Y  ++  L K +  + A  I  +MK +      +   +
Sbjct: 721 VNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTI 780

Query: 521 LMVYIKDGSVDHALRWLR-FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           L  ++K G +  AL  ++ +    G +T+      L E  +K A  E +    E    S 
Sbjct: 781 LPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSG 840

Query: 580 AKVDLVLYTSVLAHLVRCQDEQNERH 605
             +D      ++ HL + Q +  E H
Sbjct: 841 ITLDDFFLCPLIKHLCK-QKKALEAH 865



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 180/404 (44%), Gaps = 4/404 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y +L     + RD + +L L  EM     K  +    +Y   I+ L +A + + 
Sbjct: 317 VPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVY---SYTICIRVLGQAKRFDE 373

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y    K+ +  CK D  ++ VL+ +  + G    A +++  M+K +   D  TY  ++ 
Sbjct: 374 AYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLD 433

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
               +G   + ++++  MK   +  +   + +++D++ + GR+  +++++ EM+  G  P
Sbjct: 434 KFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVP 493

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y SLI  + KA +   AL L+  M I G +PN     + I  + KSG+   A+  +
Sbjct: 494 EQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRY 553

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M+  G +P     + +L   A SG++  A ++++ + + G+ P   TYT ++   +K 
Sbjct: 554 ELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKA 613

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
              D A KI  +M       DV A + L+    K G  D A R    +    +   +   
Sbjct: 614 SKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTY 673

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L     +    +    LLE    S    +L+ Y ++L  L +
Sbjct: 674 NTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCK 717



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 153/314 (48%), Gaps = 2/314 (0%)

Query: 222  EMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
            E+V      G+SL +  YN +I  L   + ++++   F ++ +  C  D  +YN+L+   
Sbjct: 866  ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 925

Query: 281  LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
                   +  ++ E M +        TY  +I  L KS RL+ AI L+  +  + F P+ 
Sbjct: 926  GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 985

Query: 341  NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
              +  L+D + KAGR++ +  ++ EM   G + +  +Y  L+  +  AG  +    L+ +
Sbjct: 986  CTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQD 1045

Query: 401  MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
            M   G  P+   +T+II++  K+G+L+  ++ F  +   G  P   TY+ L++    S +
Sbjct: 1046 MVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKR 1105

Query: 461  VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
            ++ A+ L+N M   G+ P L TY +L+  L K      A K+  E+ T G+  +V   + 
Sbjct: 1106 LEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNA 1165

Query: 521  LMV-YIKDGSVDHA 533
            L+  Y   GS D A
Sbjct: 1166 LIRGYSVSGSTDSA 1179



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 155/319 (48%), Gaps = 1/319 (0%)

Query: 241  VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
            +I++L K  K   ++   KK       + T  YN L+   +++ L   A  ++  M++  
Sbjct: 851  LIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG 910

Query: 301  CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            C  D  TY L++ ++ KS R++  +K+ +EM  + +  ++  + +++  + K+ RL+ ++
Sbjct: 911  CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 970

Query: 361  KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             +Y  +   G  P+   Y  L++   KAG+++ A  L++EM   G + N  ++ +++  H
Sbjct: 971  DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 1030

Query: 421  AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
              +G  +    +F DM   G  P   +Y+ +++    +GQ++  +  +  +   GL P L
Sbjct: 1031 RIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDL 1090

Query: 481  STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRF 539
             TY  L+  L K K ++ A  +  EM+  G   ++   + L++++ K G    A +    
Sbjct: 1091 ITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEE 1150

Query: 540  MGSSGIRTNNFIVRQLFES 558
            + + G + N F    L   
Sbjct: 1151 LLTKGWKPNVFTYNALIRG 1169



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 131/284 (46%), Gaps = 3/284 (1%)

Query: 195  PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
            P +  Y +L D + +S   + ML + +EM     K   S +  YN +I  L K+ +LE +
Sbjct: 913  PDEFTYNLLLDAMGKSMRIEEMLKVQEEM---HRKGYESTYVTYNTIISGLVKSRRLEQA 969

Query: 255  YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               +  ++         +Y  L+   L  G    A  ++  M +  C  + + Y +++  
Sbjct: 970  IDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG 1029

Query: 315  LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
               +G  +    LFQ+M ++   P    +  ++D++ KAG+L+  +  + ++   G  P 
Sbjct: 1030 HRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPD 1089

Query: 375  APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
               Y  LI+   K+ +L+ A+ L++EM+  G  PN   +  +I    K+GK   A  ++ 
Sbjct: 1090 LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYE 1149

Query: 435  DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
            ++   G+ P   TY+ L+  ++ SG  DSA   Y  M   G  P
Sbjct: 1150 ELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLP 1193



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 110/563 (19%), Positives = 223/563 (39%), Gaps = 53/563 (9%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSL 183
           G+  P L+ S  +K    + R +  P      D+ +    ++H   AL+  +    +L  
Sbjct: 147 GVSSPGLSPSRPSK--RRIGRARVQPRAPPPCDERRAAEDVIH---ALRSADGPAEALER 201

Query: 184 FRWAKRQSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
           FR A R+         C  ML  +    R  D M  +FD M     K  +  F+A   + 
Sbjct: 202 FRSAARKPRVAQTTASCNYMLELMRGHGRVGD-MAEVFDVMQRQIVKANVGTFAA---IF 257

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY--------- 293
             L     L  +      + ++   ++  +YN L+   +  G   +A E+Y         
Sbjct: 258 GGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVV 317

Query: 294 --------------------------ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
                                       ME      +  +Y + I  L ++ R D A ++
Sbjct: 318 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRI 377

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             +M+    +P       L+  +  AGR+  +  V+ +M+    +P    Y++L++ +  
Sbjct: 378 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 437

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            G   + + +W+ M+  G+  N   +T +I++  + G++  A+ +F +M++ G +P   +
Sbjct: 438 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYS 497

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+     + +   A++L+  M   G +P   T+   +    K      A +    MK
Sbjct: 498 YNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMK 557

Query: 508 TMGYSVDVSASD-VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
           + G   DV A + VL    K G +  A R    + + G+  +      + + C K + ++
Sbjct: 558 SKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFD 617

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVRC-QDEQNERHLMAI----LSATKHKAHAFL 621
            A  +    +E+    D++   S++  L +  + ++  R    +    L  T    +  L
Sbjct: 618 EAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLL 677

Query: 622 CGLFTGPEQRKQPVLSFVREFFH 644
            GL  G E + + V+  + E +H
Sbjct: 678 AGL--GREGKVKEVMHLLEEMYH 698



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 176/441 (39%), Gaps = 39/441 (8%)

Query: 190  QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
             S Y P    Y  + D L ++   +  L +   M   ++K  I   S+YN VI  L K +
Sbjct: 698  HSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM---TTKGCIPDLSSYNTVIYGLVKEE 754

Query: 250  KLEMSY---CCFKKVLDSD--------------------------------CKIDTQSYN 274
            +   ++   C  KKVL  D                                 K D  S +
Sbjct: 755  RYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCH 814

Query: 275  VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
             LM   L K    K+ E  E +     +LD      +I  L K  +   A +L ++ K  
Sbjct: 815  SLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSF 874

Query: 335  NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
                   ++ SL+  +     +D +  ++ EM+  G  P    Y  L+++  K+ +++  
Sbjct: 875  GVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEM 934

Query: 395  LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            L++ +EM   G+   +  +  II    KS +L+ A+ ++ ++   GF PTP TY  LL+ 
Sbjct: 935  LKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDG 994

Query: 455  HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
               +G+++ A  L+N M   G +   + Y  LL         +    +  +M   G + D
Sbjct: 995  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 1054

Query: 515  VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            + +  +++    K G ++  L + R +   G+  +      L +   K+   E A  L  
Sbjct: 1055 IKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFN 1114

Query: 574  TYVESAAKVDLVLYTSVLAHL 594
               +     +L  Y S++ HL
Sbjct: 1115 EMQKKGIVPNLYTYNSLILHL 1135


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 152/324 (46%), Gaps = 19/324 (5%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L D   ++   +   S FDEM        +  ++A   ++    KA +L  +   F 
Sbjct: 326 YTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTA---LLHAYLKAKQLPQASDIFN 382

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY----------------ESMEKGECSL 303
           +++D+ C  +T +Y+ L+      G   KA E+Y                E       + 
Sbjct: 383 RMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAP 442

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           +  TY  +I  L K+ ++  A +L   M      P+  I+ +L+D   K G++D + +V+
Sbjct: 443 NVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVF 502

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
           + M  CG+ P+   Y SLI++  K  +LD A+++  +M  +   PN   +T +I+   + 
Sbjct: 503 LRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRI 562

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G+   A+ + + ME  G  P   TY+ L++    SG+VD +++L+  M++ G  P   TY
Sbjct: 563 GECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTY 622

Query: 484 TALLTLLAKRKLVDVAAKILLEMK 507
             L+       L+D A  +L EMK
Sbjct: 623 RVLINHCCAAGLLDEAHSLLSEMK 646



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 175/398 (43%), Gaps = 23/398 (5%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYK-----A 289
           S +N ++     A     +Y   K++ D  C     +YN+ + ++   + LP       A
Sbjct: 178 SLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALA 237

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            ++YE M    C L+          L   G+ D A ++ + M  + F P  + ++ ++  
Sbjct: 238 EKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITF 297

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + +A +++ +  ++ EM+  G  P    Y  LI+S+ KAG ++ A   +DEMR  G   N
Sbjct: 298 LCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSAN 357

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              +T ++ ++ K+ +L  A  IF  M  AG  P   TYS L++    +G++  A ++Y 
Sbjct: 358 VVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYT 417

Query: 470 SMTSA----------------GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +                    + P + TY AL+  L K   V  A ++L  M + G   
Sbjct: 418 KLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEP 477

Query: 514 DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           +    D L+  + K G +D+A      M   G          L ++  K+   + A  +L
Sbjct: 478 NHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVL 537

Query: 573 ETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
              VES+   ++V YT+++  L R  + Q    L++++
Sbjct: 538 SQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMM 575



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 173/404 (42%), Gaps = 21/404 (5%)

Query: 79  KSGDGEK-CNEWTEEIEYLDESGSVIY-TGKGIRSVEPGFDDHVMVGGIKKPFLNASAVA 136
           K+G+ +K C  +T+ I   D  GS  Y  GK   S+ P     V  G +      A  V 
Sbjct: 405 KAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNV---VTYGALIDGLCKAHKVV 461

Query: 137 KIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
              E+++       L    +    +   + I    KV    +      R +K    Y+P 
Sbjct: 462 DAQELLDAM-----LSNGCEPNHIIYDAL-IDGFCKVGKIDNAQEVFLRMSK--CGYLPT 513

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
              Y  L D + + R  D  + +  +MV  S    +  ++A   +I  L +  + + +  
Sbjct: 514 VHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTA---MIDGLCRIGECQKALK 570

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
               + +  C  +  +Y  L+      G    + +++  M    C+ +  TY ++I    
Sbjct: 571 LLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCC 630

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
            +G LD A  L  EMK+  +      + S+V    K  +   S+ +  E++  G  P AP
Sbjct: 631 AAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSK--KFIASLGLLEELESHGTVPIAP 688

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF---GLFTMIIESHAKSGKLDIAMSIF 433
           +Y  LI++++KAG+L+ AL L  EM       N     ++T +I++   + +L+ A  ++
Sbjct: 689 VYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELY 748

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +++ R G +P  S + CL++      + + A++L  S+   G+ 
Sbjct: 749 SEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGVN 792



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 157/377 (41%), Gaps = 18/377 (4%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + YN ++Q LA A +++M +   K++ +S   +D  +          +G    A  +   
Sbjct: 41  ATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVM--- 97

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +E+ +  LD      MI  L ++   D AI     M+  +  P+   + +L+    K  +
Sbjct: 98  IEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQ 157

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           L    ++   M   G  P+  ++ SL+ SY  A     A +L   M   G  P +  + +
Sbjct: 158 LGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNI 217

Query: 416 IIESHAKSGK------LDIAMSIFTDMERAGF----LPTPSTYSCLLEMHASSGQVDSAM 465
            I S     +      L +A  ++ +M  +      + T +   CL  M    G+ D A 
Sbjct: 218 FIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGM----GKFDMAF 273

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VY 524
           ++   M   G  P  STY+ ++T L +   V+ A  +  EMK++G + DV    +L+  +
Sbjct: 274 QIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSF 333

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
            K G ++ A  W   M S G   N      L  + +K      A  +    +++    + 
Sbjct: 334 CKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNT 393

Query: 585 VLYTSVLAHLVRCQDEQ 601
           + Y++++  L +  + Q
Sbjct: 394 ITYSALVDGLCKAGEIQ 410



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 120/329 (36%), Gaps = 45/329 (13%)

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
           G+TY  ++  LA +G++D   ++ +EM E  F            ++ K GR   ++ V +
Sbjct: 40  GATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDAL-VMI 98

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           E +    +    +   +I    +A   D A+     MR     PN   +  ++    K  
Sbjct: 99  ERED--FKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKK 156

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           +L     I   M + G  P PS ++ L+  + ++     A KL   M   G  PG   Y 
Sbjct: 157 QLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYN 216

Query: 485 ALL------------TLLAKRKLV-----------------------------DVAAKIL 503
             +             LLA  + V                             D+A +I+
Sbjct: 217 IFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQII 276

Query: 504 LEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
             M   G+  D S  S V+    +   V+ A    + M S G+  + +    L +S  K 
Sbjct: 277 KVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKA 336

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVL 591
            L E A+   +         ++V YT++L
Sbjct: 337 GLIEQARSWFDEMRSIGCSANVVTYTALL 365



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           E++  G+RPS   Y +L++  A AG++D   R+  EM  +GF  +        ++  K G
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           +   A+ +   +ER  F       + ++     +   D A+   + M      P + TY 
Sbjct: 90  RWSDALVM---IEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYR 146

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS 543
            LLT   K+K +    +I+  M   G + + S  + L+  Y       +A + L+ M   
Sbjct: 147 TLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADC 206

Query: 544 G 544
           G
Sbjct: 207 G 207


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 170/378 (44%), Gaps = 3/378 (0%)

Query: 222 EMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           +++H    +G     AYN +I    +A++++ +Y    ++ +     D  +YN+L+    
Sbjct: 113 QVMHILENHGHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLC 172

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
           ++G+   A E    + K  C     TY ++I +    G +D A+KL  EM E N +P   
Sbjct: 173 SRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMF 232

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            + S++  M + G +D + ++   +   G+ P    Y  L+      GK +    L  +M
Sbjct: 233 TYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDM 292

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G   N   ++++I S  + GK++  + +  DM++ G  P    Y  L+      G+V
Sbjct: 293 VARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRV 352

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           D A+++ + M S G  P +  Y  +L  L K+K  D A  I  ++  +G S + S+ + +
Sbjct: 353 DLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSM 412

Query: 522 MVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL-ETYVESA 579
              +   G    AL  +  M   G+  +      L     ++ + + A  LL +  +ES+
Sbjct: 413 FSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESS 472

Query: 580 -AKVDLVLYTSVLAHLVR 596
             K  +V Y  VL  L +
Sbjct: 473 ECKPSVVSYNIVLLGLCK 490



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 138/325 (42%), Gaps = 40/325 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L +        D  + L DEM+  + +    +F+ YN +I+ + +   ++ ++    
Sbjct: 199 YTILIEATLLQGGIDEAMKLLDEMLEINLQP--DMFT-YNSIIRGMCREGYVDRAFQIIS 255

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +       D  +YN+L+   LN+G     +E+   M    C  +  TY ++I S+ + G
Sbjct: 256 SISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDG 315

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +++  + L ++MK++  +P    +  L+ ++ K GR+D +++V   M   G  P    Y 
Sbjct: 316 KVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYN 375

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +++    K  + D AL +++++   G  PN   +  +  +   +G    A+ +  +M   
Sbjct: 376 TILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDK 435

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKL-----------------YN------------- 469
           G  P   TY+ L+      G VD A++L                 YN             
Sbjct: 436 GVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVS 495

Query: 470 -------SMTSAGLRPGLSTYTALL 487
                  +M   G RP  +TYT L+
Sbjct: 496 DAIEVLAAMVDKGCRPNETTYTFLI 520



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 125/315 (39%), Gaps = 70/315 (22%)

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPM---------------------------------- 377
           KAG  + S+     +   GH+P   +                                  
Sbjct: 69  KAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGHPDLIA 128

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y ++I  + +A ++D+A ++ D M+  GF P+   + ++I S    G LD A+     + 
Sbjct: 129 YNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLL 188

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           +    PT  TY+ L+E     G +D AMKL + M    L+P + TY +++  + +   VD
Sbjct: 189 KENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVD 248

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM--------------------------------VYI 525
            A +I+  + + GY+ DV   ++L+                                V I
Sbjct: 249 RAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLI 308

Query: 526 ----KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
               +DG V+  +  L+ M   G++ + +    L  +  K    + A  +L+  +     
Sbjct: 309 SSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCV 368

Query: 582 VDLVLYTSVLAHLVR 596
            D+V Y ++LA L +
Sbjct: 369 PDIVNYNTILACLCK 383



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 3/244 (1%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMS 254
           G E  V+ + VL  S   DG +     ++ D  K G+      Y+ +I  L K  +++++
Sbjct: 296 GCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLA 355

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                 ++   C  D  +YN ++     +    +A  I+E + +  CS + S+Y  M  +
Sbjct: 356 IEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSA 415

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK--VYMEMQGCGHR 372
           L  +G    A+ +  EM ++   P    + SL+  + + G +D +++  V MEM+    +
Sbjct: 416 LWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECK 475

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           PS   Y  ++    K  ++  A+ +   M   G RPN   +T +IE     G L+ A  +
Sbjct: 476 PSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDL 535

Query: 433 FTDM 436
            T +
Sbjct: 536 ATTL 539



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 120/275 (43%), Gaps = 6/275 (2%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++L  +LN+ + ++    L  +MV    +  +  +S    +I  + +  K+E      K 
Sbjct: 271 ILLRGLLNQGK-WEAGYELMSDMVARGCEANVVTYSV---LISSVCRDGKVEEGVGLLKD 326

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +     K D   Y+ L+     +G    A E+ + M    C  D   Y  ++  L K  R
Sbjct: 327 MKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKR 386

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
            D A+ +F+++ E    P+ + + S+  ++   G    ++ + +EM   G  P    Y S
Sbjct: 387 ADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNS 446

Query: 381 LIESYAKAGKLDTALRLWDEMRI--AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
           LI    + G +D A+ L  +M +  +  +P+   + +++    K  ++  A+ +   M  
Sbjct: 447 LISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVD 506

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
            G  P  +TY+ L+E     G ++ A  L  ++ +
Sbjct: 507 KGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVN 541



 Score = 46.2 bits (108), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 7/167 (4%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVH-DSSKNGISLFSAYNRVIQYLAKADKLE 252
           VP    Y  +   L + +  D  LS+F+++     S N  S  S ++ +     K   L 
Sbjct: 368 VPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALG 427

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME--KGECSLDGSTYEL 310
           M      ++LD     D  +YN L++     G+  +A E+   ME    EC     +Y +
Sbjct: 428 M----ILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNI 483

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           ++  L K  R+  AI++   M ++  RP+   +  L++ +G  G L+
Sbjct: 484 VLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLN 530


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 197/446 (44%), Gaps = 8/446 (1%)

Query: 163 KMVHITQALKVINDSDTSLSLFRW-AKRQSWYVPGDECYVMLFDVLNE-SRDFDGMLSLF 220
           ++ +IT   K  ++ D+   +  W A +   Y      Y  + D L +  R F+  L +F
Sbjct: 300 RVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA-LEMF 358

Query: 221 DEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           DEM     K  +    +YN +I    KAD+   +   FK +     K +  ++ + +  +
Sbjct: 359 DEM---KQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYY 415

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   KA + YE M+      D      ++  LAKSGRL  A ++F E+K     P  
Sbjct: 416 GKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDT 475

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             +  ++    KA + D ++K++ +M      P      SLI++  KAG+ D A R++ +
Sbjct: 476 ITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQ 535

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           ++     P  G +  ++    + GK+   M +  +M  + + P   TY+ +L+    +G 
Sbjct: 536 LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGA 595

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           V+ A+ +  SMT+ G  P LS+Y  ++  L K +  + A  I  +MK +      +   +
Sbjct: 596 VNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTI 655

Query: 521 LMVYIKDGSVDHALRWLR-FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           L  ++K G +  AL  ++ +    G +T+      L E  +K A  E +    E    S 
Sbjct: 656 LPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSG 715

Query: 580 AKVDLVLYTSVLAHLVRCQDEQNERH 605
             +D      ++ HL + Q +  E H
Sbjct: 716 ITLDDFFLCPLIKHLCK-QKKALEAH 740



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 159/336 (47%), Gaps = 2/336 (0%)

Query: 222  EMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
            E+V      G+SL +  YN +I  L   + ++++   F ++ +  C  D  +YN+L+   
Sbjct: 741  ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 800

Query: 281  LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
                   +  ++ E M +        TY  +I  L KS RL+ AI L+  +  + F P+ 
Sbjct: 801  GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 860

Query: 341  NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
              +  L+D + KAGR++ +  ++ EM   G + +  +Y  L+  +  AG  +    L+ +
Sbjct: 861  CTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQD 920

Query: 401  MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
            M   G  P+   +T+II++  K+G+L+  ++ F  +   G  P   TY+ L++    S +
Sbjct: 921  MVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKR 980

Query: 461  VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
            ++ A+ L+N M   G+ P L TY +L+  L K      A K+  E+ T G+  +V   + 
Sbjct: 981  LEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNA 1040

Query: 521  LM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
            L+  Y   GS D A      M   G   N+    QL
Sbjct: 1041 LIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQL 1076



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 180/404 (44%), Gaps = 4/404 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y +L     + RD + +L L  EM     K  +    +Y   I+ L +A + + 
Sbjct: 192 VPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVY---SYTICIRVLGQAKRFDE 248

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y    K+ +  CK D  ++ VL+ +  + G    A +++  M+K +   D  TY  ++ 
Sbjct: 249 AYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLD 308

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
               +G   + ++++  MK   +  +   + +++D++ + GR+  +++++ EM+  G  P
Sbjct: 309 KFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVP 368

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y SLI  + KA +   AL L+  M I G +PN     + I  + KSG+   A+  +
Sbjct: 369 EQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRY 428

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M+  G +P     + +L   A SG++  A ++++ + + G+ P   TYT ++   +K 
Sbjct: 429 ELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKA 488

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
              D A KI  +M       DV A + L+    K G  D A R    +    +   +   
Sbjct: 489 SKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTY 548

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L     +    +    LLE    S    +L+ Y ++L  L +
Sbjct: 549 NTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCK 592



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 155/317 (48%), Gaps = 1/317 (0%)

Query: 241  VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
            +I++L K  K   ++   KK       + T  YN L+   +++ L   A  ++  M++  
Sbjct: 726  LIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG 785

Query: 301  CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            C  D  TY L++ ++ KS R++  +K+ +EM  + +  ++  + +++  + K+ RL+ ++
Sbjct: 786  CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 845

Query: 361  KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             +Y  +   G  P+   Y  L++   KAG+++ A  L++EM   G + N  ++ +++  H
Sbjct: 846  DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 905

Query: 421  AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
              +G  +    +F DM   G  P   +Y+ +++    +GQ++  +  +  +   GL P L
Sbjct: 906  RIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDL 965

Query: 481  STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRF 539
             TY  L+  L K K ++ A  +  EM+  G   ++   + L++++ K G    A +    
Sbjct: 966  ITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEE 1025

Query: 540  MGSSGIRTNNFIVRQLF 556
            + + G + N F    L 
Sbjct: 1026 LLTKGWKPNVFTYNALI 1042



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 3/292 (1%)

Query: 195  PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
            P +  Y +L D + +S   + ML + +EM     K   S +  YN +I  L K+ +LE +
Sbjct: 788  PDEFTYNLLLDAMGKSMRIEEMLKVQEEM---HRKGYESTYVTYNTIISGLVKSRRLEQA 844

Query: 255  YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               +  ++         +Y  L+   L  G    A  ++  M +  C  + + Y +++  
Sbjct: 845  IDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG 904

Query: 315  LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
               +G  +    LFQ+M ++   P    +  ++D++ KAG+L+  +  + ++   G  P 
Sbjct: 905  HRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPD 964

Query: 375  APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
               Y  LI+   K+ +L+ A+ L++EM+  G  PN   +  +I    K+GK   A  ++ 
Sbjct: 965  LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYE 1024

Query: 435  DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
            ++   G+ P   TY+ L+  ++ SG  DSA   Y  M   G  P  STY  L
Sbjct: 1025 ELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQL 1076



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/563 (19%), Positives = 223/563 (39%), Gaps = 53/563 (9%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSL 183
           G+  P L+ S  +K    + R +  P      D+ +    ++H   AL+  +    +L  
Sbjct: 22  GVSSPGLSPSRPSK--RRIGRARVQPRAPPPCDERRAAEDVIH---ALRSADGPAEALER 76

Query: 184 FRWAKRQSWYV-PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
           FR A R+         C  ML  +    R  D M  +FD M     K  +  F+A   + 
Sbjct: 77  FRSAARKPRVAHTTASCNYMLELMRGHGRVGD-MAEVFDVMQRQIVKANVGTFAA---IF 132

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY--------- 293
             L     L  +      + ++   ++  +YN L+   +  G   +A E+Y         
Sbjct: 133 GGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVV 192

Query: 294 --------------------------ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
                                       ME      +  +Y + I  L ++ R D A ++
Sbjct: 193 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRI 252

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             +M+    +P       L+  +  AGR+  +  V+ +M+    +P    Y++L++ +  
Sbjct: 253 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 312

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            G   + + +W+ M+  G+  N   +T +I++  + G++  A+ +F +M++ G +P   +
Sbjct: 313 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYS 372

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+     + +   A++L+  M   G +P   T+   +    K      A +    MK
Sbjct: 373 YNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMK 432

Query: 508 TMGYSVDVSASD-VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
           + G   DV A + VL    K G +  A R    + + G+  +      + + C K + ++
Sbjct: 433 SKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFD 492

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVRC-QDEQNERHLMAI----LSATKHKAHAFL 621
            A  +    +E+    D++   S++  L +  + ++  R    +    L  T    +  L
Sbjct: 493 EAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLL 552

Query: 622 CGLFTGPEQRKQPVLSFVREFFH 644
            GL  G E + + V+  + E +H
Sbjct: 553 AGL--GREGKVKEVMHLLEEMYH 573



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 176/441 (39%), Gaps = 39/441 (8%)

Query: 190  QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
             S Y P    Y  + D L ++   +  L +   M   ++K  I   S+YN VI  L K +
Sbjct: 573  HSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM---TTKGCIPDLSSYNTVIYGLVKEE 629

Query: 250  KLEMSY---CCFKKVLDSD--------------------------------CKIDTQSYN 274
            +   ++   C  KKVL  D                                 K D  S +
Sbjct: 630  RYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCH 689

Query: 275  VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
             LM   L K    K+ E  E +     +LD      +I  L K  +   A +L ++ K  
Sbjct: 690  SLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSF 749

Query: 335  NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
                   ++ SL+  +     +D +  ++ EM+  G  P    Y  L+++  K+ +++  
Sbjct: 750  GVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEM 809

Query: 395  LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            L++ +EM   G+   +  +  II    KS +L+ A+ ++ ++   GF PTP TY  LL+ 
Sbjct: 810  LKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDG 869

Query: 455  HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
               +G+++ A  L+N M   G +   + Y  LL         +    +  +M   G + D
Sbjct: 870  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 929

Query: 515  VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            + +  +++    K G ++  L + R +   G+  +      L +   K+   E A  L  
Sbjct: 930  IKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFN 989

Query: 574  TYVESAAKVDLVLYTSVLAHL 594
               +     +L  Y S++ HL
Sbjct: 990  EMQKKGIVPNLYTYNSLILHL 1010


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 153/322 (47%), Gaps = 3/322 (0%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
              ++  +E    S D  ++  +I    +  RL  A+    +M +  F PS   F SLV+
Sbjct: 92  VISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVN 151

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
                 R+  +M +  ++ G G+ P+  +Y ++I+S  +  ++DTAL + + M   G RP
Sbjct: 152 GFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRP 211

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +   +  +I     SGK  ++  I +DM R G  P   T+S ++++    GQ+  A K Y
Sbjct: 212 DVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQY 271

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKD 527
           + M    + P + TY +L+  L    L+D A K+L  M + G+  + V+ + ++  Y K 
Sbjct: 272 DEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKS 331

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
             VD A++ L  M   G+  + F    L++   +   + +A+ +L   V      D+  +
Sbjct: 332 KRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTF 391

Query: 588 TSVLAHLVRCQDEQNERHLMAI 609
             +L  L  C+  + E+ L+ +
Sbjct: 392 NMLLDGL--CEHGKIEKALVKL 411



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 173/393 (44%), Gaps = 9/393 (2%)

Query: 119 HVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMV---HITQALKVIN 175
           H+ + GI     + S +       +R         ++ KL F P +V    +      +N
Sbjct: 98  HIEILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVN 157

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL- 234
               ++SL         Y P    Y  + D L E+R  D  L + + M     K GI   
Sbjct: 158 RIQEAMSLVDQIVGLG-YEPNVVIYNTIIDSLCENRQVDTALDVLNHM----EKMGIRPD 212

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              YN +I  L  + K  +S      ++      D  +++ ++ +F  +G   +A + Y+
Sbjct: 213 VITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYD 272

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M +     +  TY  +I  L   G LD A K+   M  + F P+   + +LV+   K+ 
Sbjct: 273 EMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSK 332

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R+D +MK+   M   G       Y +L + Y +AG+ + A ++   M   G  P+   F 
Sbjct: 333 RVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFN 392

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           M+++   + GK++ A+    D++++  +    TY+ +++    + +V+ A  L+ S+   
Sbjct: 393 MLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALK 452

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           G+ P + TYT ++  L +++L   A ++  +MK
Sbjct: 453 GVSPDVITYTTMMIGLRRKRLWLEAHELYRKMK 485



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 139/308 (45%), Gaps = 1/308 (0%)

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
           GS Y   + S   S + + A+ LF +M E    PS   F+ L+ ++ K  + +  + ++ 
Sbjct: 38  GSDYRERLRSGLHSIKFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFR 97

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
            ++  G       + +LI+ + +  +L  AL    +M   GF P+   F  ++       
Sbjct: 98  HIEILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVN 157

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           ++  AMS+   +   G+ P    Y+ +++    + QVD+A+ + N M   G+RP + TY 
Sbjct: 158 RIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYN 217

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSS 543
           +L+T L       V+A+IL +M  MG   DV + S ++ V+ K+G +  A +    M   
Sbjct: 218 SLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQR 277

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
            +  N      L      + L + AK +L   V      + V Y +++    + +   + 
Sbjct: 278 SVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDA 337

Query: 604 RHLMAILS 611
             ++ ++S
Sbjct: 338 MKILCVMS 345



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 139/310 (44%), Gaps = 3/310 (0%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +SL D++V    +  + +   YN +I  L +  +++ +      +     + D  +YN L
Sbjct: 163 MSLVDQIVGLGYEPNVVI---YNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSL 219

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +T   + G    +  I   M +     D  T+  MI    K G+L  A K + EM +R+ 
Sbjct: 220 ITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSV 279

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   + SL++ +   G LD + KV   M   G  P+A  Y +L+  Y K+ ++D A++
Sbjct: 280 DPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMK 339

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +   M   G   +   +  + + + ++G+ + A  +   M   G LP   T++ LL+   
Sbjct: 340 ILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLC 399

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G+++ A+     +  +    G+ TY  ++  + K   V+ A  +   +   G S DV 
Sbjct: 400 EHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVI 459

Query: 517 ASDVLMVYIK 526
               +M+ ++
Sbjct: 460 TYTTMMIGLR 469



 Score = 46.6 bits (109), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 63/367 (17%), Positives = 131/367 (35%), Gaps = 79/367 (21%)

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           + + ++ ++ +M      PS   +  L+ + AK  K +  + L+  + I G   +   F+
Sbjct: 53  KFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFS 112

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+   +  +L +A+S    M + GF P+  T+  L+       ++  AM L + +   
Sbjct: 113 TLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGL 172

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534
           G  P +  Y  ++  L + +                                   VD AL
Sbjct: 173 GYEPNVVIYNTIIDSLCENR----------------------------------QVDTAL 198

Query: 535 RWLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
             L  M   GIR    T N ++ +LF S      +  +  +L   +      D++ ++++
Sbjct: 199 DVLNHMEKMGIRPDVITYNSLITRLFHS----GKWGVSARILSDMMRMGIHPDVITFSAM 254

Query: 591 LAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYEL 650
           +    +      E  L+                     E +KQ        +   I   +
Sbjct: 255 IDVFGK------EGQLL---------------------EAKKQ--------YDEMIQRSV 279

Query: 651 EEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVG 710
           +     Y  N L+N L + G ++ A+ V         FP A+ ++  +      + +   
Sbjct: 280 DPNIVTY--NSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDA 337

Query: 711 AALIAVM 717
             ++ VM
Sbjct: 338 MKILCVM 344


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 175/366 (47%), Gaps = 4/366 (1%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           ++++   L++    D  + +  W   +S + P   CY +L D   +   +    S + E+
Sbjct: 173 IINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLEL 232

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           +       +     Y  +++    +  LE +   F ++           YN  +   +  
Sbjct: 233 LEARC---VPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKG 289

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           G   KA EI+E M++  C    +TY ++I    K+ +   A+K+F EM+ +  +P+   F
Sbjct: 290 GDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTF 349

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +LV++  + G  + + +++ ++Q  G  P    Y +L+E+Y++AG    A  ++  M+ 
Sbjct: 350 TALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQH 409

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G  P+   + ++++++ ++G  + A ++F  M+R G  PT  ++  LL  ++ +G+V  
Sbjct: 410 MGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAK 469

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM- 522
             ++ N M  +G++P      ++L L  +    +   ++L  M+   Y  D+S  ++L+ 
Sbjct: 470 CEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILIN 529

Query: 523 VYIKDG 528
           +Y + G
Sbjct: 530 IYGRAG 535



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 158/340 (46%), Gaps = 3/340 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+  + P    Y    D L +  D    + +F+ M  D  +   +    Y  +I    KA
Sbjct: 268 RKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTA---TYTMLINLYGKA 324

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K  M+   F ++    CK +  ++  L+  F  +GL  KA EI+E +++     D   Y
Sbjct: 325 SKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAY 384

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++ + +++G    A ++F  M+     P    +  +VD+ G+AG  + +  V+  M+ 
Sbjct: 385 NALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKR 444

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+   ++ L+ +Y++AGK+     + ++M  +G +P+  +   ++  + + G+ + 
Sbjct: 445 LGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEK 504

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
              + T ME+  +    STY+ L+ ++  +G      +L+ S+ +  L P + T+T+ + 
Sbjct: 505 MEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIG 564

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG 528
             ++RK  +   ++  EM   G   D   + VL+    +G
Sbjct: 565 AYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNG 604



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 142/332 (42%), Gaps = 4/332 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
            D+  ++ +F   KR     P    Y ML ++  ++      L +F EM     K  I  
Sbjct: 290 GDTQKAVEIFERMKRDRCQ-PSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICT 348

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F+A   ++   A+    E +   F+++ ++  + D  +YN LM  +   G PY A EI+ 
Sbjct: 349 FTA---LVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFS 405

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M+   C  D ++Y +M+ +  ++G  + A  +F+ MK     P+      L+ +  +AG
Sbjct: 406 LMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAG 465

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++    ++  +M   G +P   +  S++  Y + G+ +    +   M    +  +   + 
Sbjct: 466 KVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYN 525

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I  + ++G       +F  +     +P   T++  +  ++   Q +  ++++  M  A
Sbjct: 526 ILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDA 585

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           G  P   T   LL+  +    +     ++  M
Sbjct: 586 GCYPDGGTAKVLLSACSNGDQIQEVTTVIRTM 617


>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 457

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 155/301 (51%), Gaps = 2/301 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +     +   L+ S   F ++L S  + D  SYN+LM  +   G P +A  ++  +
Sbjct: 79  SYNSLSSGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHCYFRLGKPEEANGVFRDI 138

Query: 297 -EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
            E+GE     ++Y +MI  L K+G ++ A+ LF+ ++ R F P    + ++++ + KA R
Sbjct: 139 FERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARR 198

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           L  + +V  E    G  P+A  Y ++++   + G+L+  L +  EMR  GF  +   +  
Sbjct: 199 LADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCT 258

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           ++ +  K+G+++ A  I   M   G +P  ++Y+ ++ +    G+ D A++L + +   G
Sbjct: 259 VVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQG 318

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHAL 534
           ++    T+T ++  L K    + A K L  M T+G+  ++ A + +L    K G +D A+
Sbjct: 319 MKCDQYTHTIIIHGLCKDGNFEGAEKHLDYMNTLGFGFNLVAFNSILDCLGKAGDIDKAV 378

Query: 535 R 535
           +
Sbjct: 379 K 379



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 171/364 (46%), Gaps = 6/364 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    +   ++ +Y    ++ ++    D  SYN L +  + K L  K+ ++++ M
Sbjct: 44  TYNTLIDGYCRFVGIDAAYNILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEM 103

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGR 355
            +     D  +Y +++    + G+ + A  +F+++ ER    PS   +  +++ + K G 
Sbjct: 104 LQSGIRPDVWSYNILMHCYFRLGKPEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGY 163

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           ++ ++ ++  ++  G  P    Y ++I    KA +L  A R+ +E    GF PN   +T 
Sbjct: 164 VNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPNAITYTT 223

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++   + G+L+  + I ++M R GF      Y  ++     +G+++ A ++   M S G
Sbjct: 224 VMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNG 283

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           L P L++Y  ++ L  ++   D A +++ E++  G   D     +++    KDG+ + A 
Sbjct: 284 LVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDGNFEGAE 343

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           + L +M + G   N      + +   K    + A  +     +S    D   YTS+L +L
Sbjct: 344 KHLDYMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVF----DSMEVKDSFTYTSLLHNL 399

Query: 595 VRCQ 598
            R +
Sbjct: 400 CRAK 403



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 135/305 (44%), Gaps = 7/305 (2%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY  +I    +   +DAA  +   MKE    P    + SL     +   L  S+ ++ EM
Sbjct: 44  TYNTLIDGYCRFVGIDAAYNILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEM 103

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG-FRPNFGLFTMIIESHAKSGK 425
              G RP    Y  L+  Y + GK + A  ++ ++   G   P+   + ++I    K+G 
Sbjct: 104 LQSGIRPDVWSYNILMHCYFRLGKPEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGY 163

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           ++ A+ +F ++ R GF+P   TY+ ++     + ++  A ++ N     G  P   TYT 
Sbjct: 164 VNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPNAITYTT 223

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSG 544
           ++    +   ++   +IL EM+  G++ D  A   V+   +K G ++ A      M S+G
Sbjct: 224 VMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNG 283

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD---EQ 601
           +  +      +     +   ++ A  L++   +   K D   +T ++  L  C+D   E 
Sbjct: 284 LVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGL--CKDGNFEG 341

Query: 602 NERHL 606
            E+HL
Sbjct: 342 AEKHL 346



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 133/290 (45%), Gaps = 4/290 (1%)

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           + I ++ KS ++  A  +  +  +    P    + +L+D   +   +D +  +   M+  
Sbjct: 12  ITISTMCKSNQIAKAETVLIDGIKLGLNPDIITYNTLIDGYCRFVGIDAAYNILNRMKEA 71

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P    Y SL     +   L  +L L+DEM  +G RP+   + +++  + + GK + A
Sbjct: 72  GINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHCYFRLGKPEEA 131

Query: 430 MSIFTDM-ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             +F D+ ER    P+ ++Y+ ++     +G V++A+ L+ ++   G  P + TY A++ 
Sbjct: 132 NGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMIN 191

Query: 489 LLAK-RKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
            L K R+L D A ++L E    G+  + ++ + V+    + G ++  L  L  M   G  
Sbjct: 192 GLCKARRLAD-ARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFT 250

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            + F    +  + +K    E A  + E  + +    DL  Y +++    R
Sbjct: 251 FDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCR 300


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN  I  L K  ++E +     K+L+S    +  +YN L+    NKG   KAF   + M
Sbjct: 289 TYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEM 348

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                     TY L+I +L    R++ A  + +EM+E+   P    +   ++   + G  
Sbjct: 349 MNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNA 408

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ ++ EM     RP+   Y SLI+ + K  ++  A   + +    G  P+  +F  +
Sbjct: 409 KKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNAL 468

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ H  +G +D A  +  +M+ A  +P   T++ L++ +    +V+ A KL + M   G+
Sbjct: 469 IDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGI 528

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALR 535
           +P   +Y  L++  +KR  +  A ++  EM ++G+   +   + L+  Y K G  DHA  
Sbjct: 529 KPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEE 588

Query: 536 WLRFMGSSGIRTNN 549
            LR M S GI  ++
Sbjct: 589 LLREMQSKGITPDD 602



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 136/282 (48%), Gaps = 2/282 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEIYES 295
            YN +I        L+ ++    ++++        +YN+L+  LFL K +      I E 
Sbjct: 324 TYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEM 383

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
            EKG    D  TY + I    + G    A+ LF EM E+N RP+   + SL+D  GK  R
Sbjct: 384 REKG-VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNR 442

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  + + + +    G  P   M+ +LI+ +   G +D A +L  EM  A   P+   F  
Sbjct: 443 MSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNT 502

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++ + +  K++ A  +  +M+  G  P   +Y+ L+  ++  G +  A+++++ M S G
Sbjct: 503 LMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLG 562

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
             P L TY AL+   +K    D A ++L EM++ G + D S 
Sbjct: 563 FDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDST 604



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 159/343 (46%), Gaps = 1/343 (0%)

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           ++M++  +++++  + K    ++N+++ +   +G   KA +    ME      +  TY  
Sbjct: 198 IKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNT 257

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I      G+ +AA K+F+ MK++N +P    + S +  + K  R++ +  V  ++   G
Sbjct: 258 VINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESG 317

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P+A  Y +LI+     G LD A    DEM   G   +   + ++I +     +++ A 
Sbjct: 318 LVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAE 377

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +  +M   G  P   TY+  +  +   G    A+ L++ M    +RP + TYT+L+ + 
Sbjct: 378 DMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVF 437

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNN 549
            KR  +  A +   +    G   D+   + L+  +  +G++D A + L+ M ++ +  + 
Sbjct: 438 GKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDE 497

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
                L +   +    E AK LL+   E   K D + Y ++++
Sbjct: 498 VTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLIS 540



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 3/210 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LSLFDEMV    KN       Y  +I    K +++  +   FKK +      D   +N L
Sbjct: 412 LSLFDEMVE---KNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNAL 468

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +      G   +AF++ + M+  +   D  T+  ++    +  +++ A KL  EMKER  
Sbjct: 469 IDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGI 528

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P    + +L+    K G +  +++V+ EM   G  P+   Y +LI+ Y+K G+ D A  
Sbjct: 529 KPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEE 588

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           L  EM+  G  P+   +  +IE+   +  L
Sbjct: 589 LLREMQSKGITPDDSTYLYVIEAMKTNDDL 618



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 124/278 (44%), Gaps = 1/278 (0%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           T  +++L++ +     P +A E    M++ E      T   ++  L K  ++  A  +++
Sbjct: 147 TLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYE 206

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EM + N + S   F  +++ + + G+   +      M+  G +P+   Y ++I  Y   G
Sbjct: 207 EMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRG 266

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           K + A +++  M+    +P+   +   I    K  +++ A  +   +  +G +P   TY+
Sbjct: 267 KFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYN 326

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L++   + G +D A    + M + G+   + TY  L+  L   K ++ A  ++ EM+  
Sbjct: 327 ALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREK 386

Query: 510 GYSVDVSASDV-LMVYIKDGSVDHALRWLRFMGSSGIR 546
           G   DV   ++ +  Y + G+   AL     M    IR
Sbjct: 387 GVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIR 424



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/309 (19%), Positives = 125/309 (40%), Gaps = 21/309 (6%)

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +++EM     + +   F ++I    + GK   A      ME  G  P   TY+ ++  + 
Sbjct: 204 VYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYC 263

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G+ ++A K++ +M    L+P   TY + ++ L K + ++ A+ +L ++   G   +  
Sbjct: 264 LRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAV 323

Query: 517 ASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
             + L+      G +D A  +   M + GI  + F    L  +       E A+ +++  
Sbjct: 324 TYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEM 383

Query: 576 VESAAKVDLVLYTSVLAHLVRCQ---------DEQNERHLMAILSATKHKAHAFLCGLFT 626
            E   + D+V Y   +    RC          DE  E+++   +     + +  L  +F 
Sbjct: 384 REKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTV-----ETYTSLIDVFG 438

Query: 627 GPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENK 686
              +  +    F +    G+  ++         N L++   + G I+RA  + K     K
Sbjct: 439 KRNRMSEAEEKFKKSIKEGMLPDI------IMFNALIDGHCVNGNIDRAFQLLKEMDNAK 492

Query: 687 LFPKAIVFD 695
           + P  + F+
Sbjct: 493 VVPDEVTFN 501


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 176/401 (43%), Gaps = 5/401 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           QS   P    Y +L      + + D  L  FD M     K  +     YN +I    K  
Sbjct: 198 QSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRM---EKKGCLPNVVTYNTLIDGYCKLR 254

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           K++  +   + +     + +  SYNV++     +G   +   +   M K   SLD  TY 
Sbjct: 255 KIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYN 314

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I    K G    A+ +  EM      PS   + SL+ SM KAG ++ + +   +M+  
Sbjct: 315 TLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVR 374

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+   Y +L++ +++ G ++ A R+  EM   GF P+   +  +I  H  +GK+  A
Sbjct: 375 GLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDA 434

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           +++  DM+  G  P   +YS +L     S  VD A+++   M + G++P   TY++L+  
Sbjct: 435 IAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQG 494

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
             +++    A  +  EM  +G   D  + + ++  Y  +G +  A++    M   G+  +
Sbjct: 495 FCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPD 554

Query: 549 NFIVRQLFESCMKNALYESAKP-LLETYVESAAKVDLVLYT 588
                 L     K A    AK  LL+ + E +   D+  +T
Sbjct: 555 VVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHT 595



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 193/429 (44%), Gaps = 15/429 (3%)

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDE---MVHD 226
           A K ++D D SL +FR + ++++ +      V    V + SR     L L D+   +VH 
Sbjct: 107 AAKTLDDEDASL-VFR-SLQETYDLCNSTSSVFDLVVKSYSR-----LCLIDKALSIVHL 159

Query: 227 SSKNG-ISLFSAYNRVIQYLAKADK-LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
           S  +G +    +YN V+    ++ + +  +   FK++L S    +  +YN+L+  F   G
Sbjct: 160 SQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAG 219

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
               A   ++ MEK  C  +  TY  +I    K  ++D   +L + M  +   P+   + 
Sbjct: 220 NLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYN 279

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
            +++ + + GR+     V  EM   G+      Y +LI+ Y K G    AL +  EM   
Sbjct: 280 VVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  P+   +T +I S  K+G ++ A      M   G  P   TY+ L++  +  G ++ A
Sbjct: 340 GLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399

Query: 465 MKLYNSMTSAGLRPGLSTYTALLT-LLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLM 522
            ++   M   G  P + TY AL+       K+VD  A +L +MK  G + D VS S VL 
Sbjct: 400 YRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIA-VLEDMKEKGLTPDVVSYSTVLS 458

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            + +   VD ALR  R M + GI+ +      L +   +    + A  L +  +      
Sbjct: 459 GFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPP 518

Query: 583 DLVLYTSVL 591
           D   YT+++
Sbjct: 519 DEFTYTALI 527



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/266 (19%), Positives = 112/266 (42%), Gaps = 15/266 (5%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++   ++   +  +Y   K+++D+       +YN L+      G    A  + E M
Sbjct: 382 TYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDM 441

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++   + D  +Y  ++    +S  +D A+++ ++M  +  +P    ++SL+    +  R 
Sbjct: 442 KEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRT 501

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++ EM   G  P    Y +LI +Y   G L  A++L +EM   G  P+   ++++
Sbjct: 502 KEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVL 561

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS---------------SGQV 461
           I    K  +   A  +   +     +P+  TY  L+E  ++                G +
Sbjct: 562 INGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMM 621

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALL 487
             A +++ SM     +P  + Y  ++
Sbjct: 622 TEADQVFESMLEKNHKPDGTAYNVMI 647



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 104/258 (40%), Gaps = 15/258 (5%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +IQ   +  + + +   F ++L      D  +Y  L+  +  +G   KA +++  M
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEM 546

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAA----IKLFQE-----------MKERNFRPSFN 341
            +     D  TY ++I  L K  R   A    +KLF E           + E      F 
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFK 606

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
              SL+      G +  + +V+  M    H+P    Y  +I  + + G +  A  L+ EM
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEM 666

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
             +GF  +      ++++  K GK++   S+  ++ R+  L        L+E++   G +
Sbjct: 667 VKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEINHREGNM 726

Query: 462 DSAMKLYNSMTSAGLRPG 479
           D  + +   M   G  P 
Sbjct: 727 DVVLDVLAEMAKDGFLPN 744


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 153/326 (46%), Gaps = 7/326 (2%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           T ++N+++    + G P +A E+   M +     +  TY  +I      GR+ AA+ + +
Sbjct: 114 TTTFNIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMR 169

Query: 330 EMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAK 387
           EM+ER    P+   + +++    K GR+D ++KV+ EM   G  +P A MY +LI  Y  
Sbjct: 170 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 229

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            GKLDTAL   D M   G       + +++ +    G+   A  +  +M   G  P   T
Sbjct: 230 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 289

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+  H   G V  A++++ +M+  G+R  + TYTAL+  L+K+  V    K+  E  
Sbjct: 290 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV 349

Query: 508 TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G   D+   + L+  +   G++D A   +  M    I  ++     L          +
Sbjct: 350 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 409

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLA 592
            A+ L++   E   + DLV Y ++++
Sbjct: 410 EARKLIDEMTERGIQPDLVTYNTLIS 435



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 152/337 (45%), Gaps = 2/337 (0%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L + R  + +    P    Y  +     +    D  + +FDEM+        ++   YN
Sbjct: 164 ALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM--YN 221

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I       KL+ +     ++++    +   +YN+L+      G   +A+E+ E M   
Sbjct: 222 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 281

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             + D  TY ++I    K G +  A+++F+ M  R  R +   + +L+ ++ K G++  +
Sbjct: 282 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQET 341

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            K++ E    G RP   +Y +LI S++ +G +D A  +  EM      P+   +  ++  
Sbjct: 342 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRG 401

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
               G++D A  +  +M   G  P   TY+ L+  ++  G V  A+++ N M + G  P 
Sbjct: 402 LCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPT 461

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           L TY AL+  L K    D A  ++ EM   G + D S
Sbjct: 462 LLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 498



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 5/276 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
            D  L   D MV    + G+++  + YN ++  L    +   +Y   +++       D  
Sbjct: 233 LDTALLYRDRMV----ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 288

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN+L+     +G   KA EI+E+M +        TY  +I +L+K G++    KLF E 
Sbjct: 289 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 348

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             R  RP   ++ +L++S   +G +D + ++  EM+     P    Y +L+      G++
Sbjct: 349 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 408

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D A +L DEM   G +P+   +  +I  ++  G +  A+ I  +M   GF PT  TY+ L
Sbjct: 409 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 468

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           ++    +GQ D A  +   M   G+ P  STY +L+
Sbjct: 469 IQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 504


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 153/318 (48%), Gaps = 5/318 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLE 252
           VP    Y +LFD L+ + D   MLSLF +    S KNG+++     + ++  L K  K+ 
Sbjct: 298 VPDGFTYSILFDGLSRNGDSKAMLSLFGK----SLKNGVTIGDYTCSILLNGLCKDGKVS 353

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
           ++    + ++++        YN L+  +   G    AF  +  M+      D  TY  +I
Sbjct: 354 IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI 413

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L K+ R+  A  L  EM++    P+   F +L+D+ G+ G+L+    V  EMQ  G +
Sbjct: 414 NGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 473

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y S++ ++ K GK+  A+ + D+M      PN  ++  II+++ + G  D A  +
Sbjct: 474 PNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFIL 533

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M+  G  P+  TY+ L++   +  Q+  A ++ NS+++  L P   +Y  L++    
Sbjct: 534 VEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCY 593

Query: 493 RKLVDVAAKILLEMKTMG 510
           R  +D A  +   M   G
Sbjct: 594 RGNIDKALDLQQRMHKYG 611



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/469 (21%), Positives = 203/469 (43%), Gaps = 23/469 (4%)

Query: 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDECY-VMLFDVLNESRDFDGMLSLFDEMVHDS 227
           QA     D   ++ + R   R     P    Y V++  +    R  D  + +FDEM   +
Sbjct: 168 QACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDA-VEVFDEMTERA 226

Query: 228 S-KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
              N I+    YN +I    K   LE  +    +++    K +  +YNVL++     G  
Sbjct: 227 VLPNHIT----YNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRM 282

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +   + + M   +   DG TY ++   L+++G   A + LF +  +          + L
Sbjct: 283 GETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSIL 342

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           ++ + K G++  + +V   +   G  P+  +Y +LI  Y + G+L+ A   + +M+    
Sbjct: 343 LNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI 402

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
           +P+   +  +I    K+ ++  A  +  +M+  G  PT  T++ L++ +  +GQ++    
Sbjct: 403 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 462

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYI 525
           + + M   GL+P + +Y +++    K   +  A  IL +M       +    + ++  Y+
Sbjct: 463 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 522

Query: 526 KDGSVDHALRWLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
           + G  D A   +  M S+GI     T N +++ L   C ++ + E A+ ++ +       
Sbjct: 523 EHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL---CNQSQISE-AEEIINSLSNHRLI 578

Query: 582 VDLVLYTSVLA------HLVRCQDEQNERHLMAILSATKHKAHAFLCGL 624
            D V Y ++++      ++ +  D Q   H   I S T    H  + GL
Sbjct: 579 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKS-TVRTYHQLISGL 626



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 132/318 (41%), Gaps = 45/318 (14%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
            +  VP    Y  L +   ++ + +G  S F +M    S++       YN +I  L KA+
Sbjct: 364 NAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM---KSRHIKPDHITYNALINGLCKAE 420

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           ++  +     ++ D+      +++N L                                 
Sbjct: 421 RITNAQDLLMEMQDNGVNPTVETFNTL--------------------------------- 447

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
             I +  ++G+L+    +  EM+E   +P+   + S+V++  K G++  ++ +  +M   
Sbjct: 448 --IDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK 505

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
              P+A +Y ++I++Y + G  D A  L ++M+  G  P+   + ++I+      ++  A
Sbjct: 506 DVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEA 565

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             I   +     +P   +Y+ L+      G +D A+ L   M   G++  + TY  L++ 
Sbjct: 566 EEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 625

Query: 490 LAKRKLVDVAAKILLEMK 507
           L         A  L+EM+
Sbjct: 626 LG-------GAGRLIEME 636



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 105/253 (41%), Gaps = 5/253 (1%)

Query: 222 EMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           +++ +   NG++     +N +I    +  +LE  +    ++ ++  K +  SY  ++  F
Sbjct: 427 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 486

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   +A  I + M   +   +   Y  +I +  + G  D A  L ++MK     PS 
Sbjct: 487 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 546

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR--PSAPMYVSLIESYAKAGKLDTALRLW 398
             +  L+  +    ++  + ++   +    HR  P A  Y +LI +    G +D AL L 
Sbjct: 547 VTYNLLIKGLCNQSQISEAEEIINSLS--NHRLIPDAVSYNTLISACCYRGNIDKALDLQ 604

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M   G +     +  +I     +G+L     ++  M +   +P+ + ++ ++E ++  
Sbjct: 605 QRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKY 664

Query: 459 GQVDSAMKLYNSM 471
           G    A  L   M
Sbjct: 665 GNEIKAEDLRKEM 677


>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 481

 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/476 (22%), Positives = 201/476 (42%), Gaps = 43/476 (9%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L    +++ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHGAKNAEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSL----------FDE-----MVHDSSKNGI-----SLFS------------AYNRVIQY 244
             +          +DE     M+    K GI      LF             +Y+ + + 
Sbjct: 65  RCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
           +++  +  MS   F K+++   +    ++NVL+  F   G    A   +E ++  E + D
Sbjct: 125 ISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDLKSREITPD 184

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  MI    +  +++ A K F EMKE+   P+   + +L+       R+D ++++  
Sbjct: 185 VVTYNTMINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRLVE 244

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP-NFGLFTMIIESHAKS 423
           EM+G G +P+A  Y +L+     A K+  A  L  EM      P +  +F  +I S  K+
Sbjct: 245 EMKGLGIKPNAITYSTLLPGLCDAEKMSEARSLLKEMVDKYIAPKDNSIFIRLISSQCKA 304

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LRPGL- 480
           G LD A  +   M R         Y  L+E +  +G+ D A+KL++ +      LRP   
Sbjct: 305 GNLDAAADVLKAMIRLSIPTEAGHYGVLIENYCKAGKYDQAVKLFDKLIEKDIILRPQST 364

Query: 481 -----STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALR 535
                S Y  L+  L        A  ++ ++  +G    +S + ++  + ++GS D A  
Sbjct: 365 LHMEPSAYNPLIEYLCNNGQTGKAETLVRQLMKLGVQDSISLNTLIRGHSQEGSPDSAFE 424

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            L+ M    + +       L +S +K      AK  L+  +E+    D  L+ SV+
Sbjct: 425 ILKIMLRRKVDSEKSAYDSLVQSYLKRNEPADAKAALDXMIENDHLPDSSLFRSVM 480



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 138/301 (45%), Gaps = 6/301 (1%)

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M K     D   + LMI S  K G +  ++KLFQ+M+E     +   + +L   + + GR
Sbjct: 71  MPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGR 130

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              S + + +M   G  P+   +  LI  +  +GK++TA R +++++     P+   +  
Sbjct: 131 YMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDLKSREITPDVVTYNT 190

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I  + +  K++ A   F +M+     PT  TY+ L++ +AS  +VD A++L   M   G
Sbjct: 191 MINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRLVEEMKGLG 250

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEM--KTMGYSVDVSASDVLMVYIKDGSVDHA 533
           ++P   TY+ LL  L   + +  A  +L EM  K +    +     ++    K G++D A
Sbjct: 251 IKPNAITYSTLLPGLCDAEKMSEARSLLKEMVDKYIAPKDNSIFIRLISSQCKAGNLDAA 310

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
              L+ M    I T       L E+  K   Y+ A  L +  +E     D++L      H
Sbjct: 311 ADVLKAMIRLSIPTEAGHYGVLIENYCKAGKYDQAVKLFDKLIEK----DIILRPQSTLH 366

Query: 594 L 594
           +
Sbjct: 367 M 367


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 210/478 (43%), Gaps = 39/478 (8%)

Query: 151 LETQLDKLQFVPKMVHITQALKVIN------DSDTSLSLFRWAKRQSWYVPGDECYVMLF 204
           L  QL +  F P + +      ++N       +D +L+       +  +VP    +  L 
Sbjct: 73  LMLQLTQAHFTPCLTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEG-HVPLSNTFNNLM 131

Query: 205 DVLNESRDFDGMLSLFDEM----VHDSSKNGISLFSA-----YNRVIQYLAKADKLEMS- 254
            +L  S  FD    +F+E+    V D+   GI +        + +  + LA  ++  +S 
Sbjct: 132 CLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSP 191

Query: 255 ----------YCC-FKKVLDSD---CKID-------TQSYNVLMTLFLNKGLPYKAFEIY 293
                      CC +  V+ +    CK+D         +Y+VLM  F  +GL  + F++Y
Sbjct: 192 NVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMY 251

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           E+M++     +   Y  +I      G +D A K+F EM+E+        +  L+  + + 
Sbjct: 252 ENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRG 311

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
            +   ++K+  ++   G  P+   Y  LI  +   GK+DTA+RL+++++ +G  P    +
Sbjct: 312 KKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTY 371

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +I  ++K   L  A+ +  +ME     P+  TY+ L++  A     + A ++++ M  
Sbjct: 372 NTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEK 431

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
           +GL P + TY+ L+  L     +  A+K+   +  M    + V  + ++  Y K+GS   
Sbjct: 432 SGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYR 491

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           ALR L  M  SG+  N            ++  ++ A+ LL   + S  K  + LY  V
Sbjct: 492 ALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 180/398 (45%), Gaps = 11/398 (2%)

Query: 200 YVMLFD-VLN---ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSY 255
           Y  L+D ++N    S   D  L+    M+H+     + L + +N ++  L +++  + ++
Sbjct: 88  YTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGH---VPLSNTFNNLMCLLIRSNYFDKAW 144

Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
             F + L S   +D  S+ +++      G   K F +   +E+   S +   Y  +I   
Sbjct: 145 WIFNE-LKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGC 203

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            K G +  A  LF +M      P+ + ++ L++   K G      ++Y  M+  G  P+A
Sbjct: 204 CKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNA 263

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y  LI  Y   G +D A +++ EMR  G       + ++I    +  K   A+ +   
Sbjct: 264 YAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHK 323

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           + + G  P   TY+ L+      G++D+A++L+N + S+GL P L TY  L+   +K + 
Sbjct: 324 VNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVEN 383

Query: 496 VDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           +  A  ++ EM+    +   V+ + ++  + +    + A      M  SG+  + +    
Sbjct: 384 LAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSV 443

Query: 555 LFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           L    C+   + E++K L ++  E   + + V+Y +++
Sbjct: 444 LIHGLCVHGNMKEASK-LFKSLGEMHLQPNSVIYNTMI 480


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 110/483 (22%), Positives = 206/483 (42%), Gaps = 5/483 (1%)

Query: 221 DEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI-DTQSYNVLMTL 279
           D  +  S++         N +++ L    +L+++   F ++ D +    D  +Y V++  
Sbjct: 166 DAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKA 225

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
               G    AF +   +E+        TY +++ +L +SGR++ A +L   M E   RPS
Sbjct: 226 LCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPS 285

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              F  L++ + +  R      V  EM+G G  P+  +Y  LI  + + G    ALRL+D
Sbjct: 286 IVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFD 345

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH-ASS 458
           EM   G +     + +I ++  K G+++ A  I  +M  AG     S ++ ++  H   +
Sbjct: 346 EMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGT 405

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G++D  ++L   M +  L+P  +  TA +  L KR   + AA+I   +   G  V+++ S
Sbjct: 406 GRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATS 465

Query: 519 DVLMVYIKDG-SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           + L+  +  G ++  A + L+ M  SG+  +      + + C K +  E A  L +  ++
Sbjct: 466 NALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIK 525

Query: 578 SAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLS 637
              K DL  + + L         ++  HL+  + +   K      G       + + V  
Sbjct: 526 RGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHK 585

Query: 638 FVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQH 697
             +     I   L   A  Y  N L+      G I+ A  V      N + P  I ++  
Sbjct: 586 ANKYLIELIKNGLRPNAVIY--NALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSL 643

Query: 698 IAW 700
           + W
Sbjct: 644 MYW 646



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 4/348 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            D +L L  EMV    K   ++ +A    IQ L K  K E +   +  VL     ++  +
Sbjct: 408 LDVVLRLIREMVARFLKPNDAVMTA---CIQELCKRGKHEEAAEIWFLVLGKGLGVNIAT 464

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
            N L+          +A ++ ++M       D  TY +MI    K+ +++ AI+L  +M 
Sbjct: 465 SNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMI 524

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +R F+P    F + + +    G+++  + +  +M+  G +P    Y ++I+ Y KA  + 
Sbjct: 525 KRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVH 584

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A +   E+   G RPN  ++  +I  + ++G +  A+ +   M+  G  PTP TY+ L+
Sbjct: 585 KANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLM 644

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
                +G V+ A +++       +  G+  YT ++    K   +D A     EM      
Sbjct: 645 YWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIR 704

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +      LM  Y K G+ + A +    M SSGI  +      L   C
Sbjct: 705 PNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGC 752



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 161/356 (45%), Gaps = 2/356 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN++I +  +      +   F +++    K    +YN++      +G    A +I + M 
Sbjct: 324 YNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEML 383

Query: 298 KGECSLDGSTYELMIP-SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               ++  S +  ++   L  +GRLD  ++L +EM  R  +P+  +  + +  + K G+ 
Sbjct: 384 LAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKH 443

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + +++  + G G   +     +LI    +   +  A ++   M  +G   +   + ++
Sbjct: 444 EEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIM 503

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K+ K++ A+ +  DM + GF P   T++  L  + + G+V+  + L + M S GL
Sbjct: 504 IQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGL 563

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALR 535
           +P + TY  ++    K K V  A K L+E+   G   +    + L+  Y ++GS+  A+ 
Sbjct: 564 KPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIG 623

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            L  M  +GI+        L        L E AK +    +    ++ ++ YT ++
Sbjct: 624 VLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIII 679



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 134/304 (44%), Gaps = 41/304 (13%)

Query: 306 STYELMIPSLAKS---GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           +T +L++ +   S   G L  A   F E+  R   PS      LV+++G  G+LD + KV
Sbjct: 143 ATADLLVRACLNSPAPGSLSCAADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKV 202

Query: 363 YMEMQ-GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           + EM+ G    P    Y  +I++  +AG++D A  +  E+  +G +P    + +++++  
Sbjct: 203 FGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALC 262

Query: 422 KSGKLDIAM-----------------------------------SIFTDMERAGFLPTPS 446
           +SG+++ A                                    ++  +ME  G  P   
Sbjct: 263 RSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEV 322

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            Y+ L+  H   G    A++L++ M S G++  + TY  +   L K   ++ A +IL EM
Sbjct: 323 IYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEM 382

Query: 507 KTMGYSVDVSASDVLMVY--IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
              G +V  S  + ++ +     G +D  LR +R M +  ++ N+ ++    +   K   
Sbjct: 383 LLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGK 442

Query: 565 YESA 568
           +E A
Sbjct: 443 HEEA 446



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 38/268 (14%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +IQ+  KA K+E +      ++    K D  ++N  +  + N G       + + M+
Sbjct: 500 YNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMK 559

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  TY  +I    K+  +  A K   E+ +   RP+  I+ +L+   G+ G + 
Sbjct: 560 SEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSIS 619

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSL-----------------------------------I 382
            ++ V   M+  G +P+   Y SL                                   I
Sbjct: 620 DAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIII 679

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           + + K GK+D A+  + EM     RPN   +T ++ ++ K G  + A  +F +M  +G +
Sbjct: 680 QGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIV 739

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNS 470
           P   +Y+ L+   +   +VDS  K+  S
Sbjct: 740 PDTVSYNTLI---SGCCEVDSLDKIVES 764



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN LM    + GL  +A EI+         L    Y ++I    K G++D A+  F+EM
Sbjct: 639 TYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEM 698

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             R+ RP+   + +L+ +  K G  + + K++ EM   G  P    Y +LI    +   L
Sbjct: 699 HYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSL 758

Query: 392 DTALRLWDEM 401
           D  +    EM
Sbjct: 759 DKIVESPAEM 768



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 93/214 (43%), Gaps = 3/214 (1%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           + +L L D+M  +  K  I     Y  +I    KA  +  +     +++ +  + +   Y
Sbjct: 549 EDILHLLDQMKSEGLKPDIV---TYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIY 605

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N L+  +   G    A  + ++M+         TY  ++  +  +G ++ A ++F +   
Sbjct: 606 NALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCIL 665

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           +N       +  ++    K G++D ++  + EM     RP+   Y +L+ +Y K G  + 
Sbjct: 666 KNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEE 725

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
           A +L+DEM  +G  P+   +  +I    +   LD
Sbjct: 726 AFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSLD 759


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 197/450 (43%), Gaps = 28/450 (6%)

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
           AL   N    +   F+  +R+  Y P D  Y ++   L ++ + D    L  ++     +
Sbjct: 47  ALAKANAGQLAYEKFQQMQRRG-YPPDDFTYSIVLRGLCKAGELDKAKELLGQL----RE 101

Query: 230 NGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSD-CKIDTQSYNVLMTLFLNKGLPY 287
           +G+ L    Y+ VI    KA +++ +   FK +     C  D  ++N L+    +     
Sbjct: 102 SGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMS 161

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +AF ++E M K  C  +  +Y  ++  L K+GRLD A +L++EM E++  P    + S V
Sbjct: 162 EAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFV 221

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS-----------------LIESYAKAGK 390
             + KA R+  +     +M   G +  A  + +                 +IE   ++G 
Sbjct: 222 TGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGM 281

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL---PTPST 447
           LD A + ++EM      P+  LF  +I +  KS +L   + +F  M+        P   T
Sbjct: 282 LDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLET 341

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ +++    + Q+D A +L N M + GL P + TY+AL+  L K   +D A  +L EM 
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 508 TMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G   D  + + +L    K G VD+AL  L  M + G   +      L +   K    +
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRID 461

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            A   L   V +    D+  YT ++  L R
Sbjct: 462 EAITFLAKMVAAKCTPDVFSYTIIITALCR 491



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 167/351 (47%), Gaps = 7/351 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKA--FEIY 293
           A N++I++L ++  L+ +   F++++  +     + +N L+  +  +K LP     F+  
Sbjct: 268 AQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRM 327

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           +SM++  C  +  TY +M+ +L K+ +LD A +L  EM      P    +++LVD + K 
Sbjct: 328 KSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKL 387

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G+LD +  +  EM   G  P +    S++ + +KAGK+D AL   + M+  G  P+   +
Sbjct: 388 GKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTY 447

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +++   K+G++D A++    M  A   P   +Y+ ++     SGQ   A  ++  M  
Sbjct: 448 NTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVK 507

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
            G+ P    Y +LL  LA+  L D+A ++L   KT     D V    VL    K G  + 
Sbjct: 508 RGVLPDTVLYHSLLDGLARNGLEDLALELL---KTSLCKPDFVMHKMVLDGLCKAGKAED 564

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           A   +  M  +G   + F    +     K    + A+ L++   E+   V+
Sbjct: 565 ACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASETHTSVE 615



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 108/454 (23%), Positives = 188/454 (41%), Gaps = 59/454 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ +VL        ++ LFD +         S+F+ YN  +  LAKA+  +++Y  F+
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQH-SVFT-YNCFLDALAKANAGQLAYEKFQ 62

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++       D  +Y++++      G   KA E+   + +    L+  TY ++I    K+ 
Sbjct: 63  QMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKAS 122

Query: 320 RLDAAIKLFQEMKE-RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           R+D A+++F+ M       P    F SL+  +    R+  +  ++  M   G  P+   Y
Sbjct: 123 RVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISY 182

Query: 379 VSLIESYAKAGKLDTALRLWDEM-----------------------RIA----------- 404
            +L++   KAG+LD A RLW+EM                       R+A           
Sbjct: 183 STLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVT 242

Query: 405 -GFRPNFGLFTMII-----ESHA------------KSGKLDIAMSIFTDMERAGFLPTPS 446
            G + +   F+ +I     + HA            +SG LD A   F +M      P+  
Sbjct: 243 KGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAE 302

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAG---LRPGLSTYTALLTLLAKRKLVDVAAKIL 503
            ++ L+     S ++   + L+  M S       P L TY  ++  L K K +D A +++
Sbjct: 303 LFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 504 LEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            EM   G S DV     L+  + K G +D A   L  M   G+  ++F    +  +  K 
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              + A   LET     +  DLV Y ++L  L +
Sbjct: 423 GKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 153/318 (48%), Gaps = 5/318 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLE 252
           VP    Y +LFD L+ + D   MLSLF + +    KNG+++     + ++  L K  K+ 
Sbjct: 117 VPDGFTYSILFDGLSRNGDSKAMLSLFGKYL----KNGVTIGDYTCSILLNGLCKDGKVS 172

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
           ++    + ++++        YN L+  +   G    AF  +  M+      D  TY  +I
Sbjct: 173 IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI 232

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L K+ R+  A  L  EM++    P+   F +L+D+ G+ G+L+    V  EMQ  G +
Sbjct: 233 NGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 292

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y S++ ++ K GK+  A+ + D+M      PN  ++  II+++ + G  D A  +
Sbjct: 293 PNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFIL 352

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M+  G  P+  TY+ L++   +  Q+  A ++ NS+++  L P   +Y  L++    
Sbjct: 353 VEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCY 412

Query: 493 RKLVDVAAKILLEMKTMG 510
           R  +D A  +   M   G
Sbjct: 413 RGNIDKALDLQQRMHKYG 430



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/420 (21%), Positives = 187/420 (44%), Gaps = 21/420 (5%)

Query: 217 LSLFDEMVHDSS-KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           + +FDEM   +   N I+    YN +I    K   LE  +    +++    K +  +YNV
Sbjct: 35  VEVFDEMTERAVLPNHIT----YNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNV 90

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L++     G   +   + + M   +   DG TY ++   L+++G   A + LF +  +  
Sbjct: 91  LLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNG 150

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
                   + L++ + K G++  + +V   +   G  P+  +Y +LI  Y + G+L+ A 
Sbjct: 151 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 210

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
             + +M+    +P+   +  +I    K+ ++  A  +  +M+  G  PT  T++ L++ +
Sbjct: 211 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 270

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             +GQ++    + + M   GL+P + +Y +++    K   +  A  IL +M       + 
Sbjct: 271 GRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNA 330

Query: 516 SASDVLM-VYIKDGSVDHALRWLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKP 570
              + ++  Y++ G  D A   +  M S+GI     T N +++ L   C ++ + E A+ 
Sbjct: 331 QVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL---CNQSQISE-AEE 386

Query: 571 LLETYVESAAKVDLVLYTSVLA------HLVRCQDEQNERHLMAILSATKHKAHAFLCGL 624
           ++ +        D V Y ++++      ++ +  D Q   H   I S T    H  + GL
Sbjct: 387 IINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKS-TVRTYHQLISGL 445



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 138/321 (42%), Gaps = 1/321 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           SYNV++      G    A E+++ M +     +  TY  MI    K G L+A  +L  +M
Sbjct: 17  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM 76

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
                +P+   +  L+  + +AGR+  +  +  EM      P    Y  L +  ++ G  
Sbjct: 77  VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 136

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
              L L+ +    G        ++++    K GK+ IA  +   +  AG +PT   Y+ L
Sbjct: 137 KAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTL 196

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +  +  +G+++ A   +  M S  ++P   TY AL+  L K + +  A  +L+EM+  G 
Sbjct: 197 INGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGV 256

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           +  V   + L+  Y + G ++     L  M  +G++ N      +  +  KN     A  
Sbjct: 257 NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVA 316

Query: 571 LLETYVESAAKVDLVLYTSVL 591
           +L+         +  +Y +++
Sbjct: 317 ILDDMFHKDVLPNAQVYNAII 337



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 141/317 (44%), Gaps = 6/317 (1%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG-ISL 234
           DS   LSLF    +    +    C ++L  +       DG +S+ +E++      G +  
Sbjct: 135 DSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCK-----DGKVSIAEEVLQSLVNAGLVPT 189

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              YN +I    +  +LE ++  F ++     K D  +YN L+           A ++  
Sbjct: 190 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 249

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M+    +    T+  +I +  ++G+L+    +  EM+E   +P+   + S+V++  K G
Sbjct: 250 EMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNG 309

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++  ++ +  +M      P+A +Y ++I++Y + G  D A  L ++M+  G  P+   + 
Sbjct: 310 KIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 369

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I+      ++  A  I   +     +P   +Y+ L+      G +D A+ L   M   
Sbjct: 370 LLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKY 429

Query: 475 GLRPGLSTYTALLTLLA 491
           G++  + TY  L++ L 
Sbjct: 430 GIKSTVRTYHQLISGLG 446



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/330 (19%), Positives = 143/330 (43%), Gaps = 5/330 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLE 252
           +P    Y  + D   +  D +    L D+MV H    N I+    YN ++  L +A ++ 
Sbjct: 47  LPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAIT----YNVLLSGLCRAGRMG 102

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +     ++       D  +Y++L       G       ++    K   ++   T  +++
Sbjct: 103 ETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILL 162

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L K G++  A ++ Q +      P+  I+ +L++   + G L+ +   + +M+    +
Sbjct: 163 NGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIK 222

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y +LI    KA ++  A  L  EM+  G  P    F  +I+++ ++G+L+    +
Sbjct: 223 PDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIV 282

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
            ++M+  G  P   +Y  ++     +G++  A+ + + M    + P    Y A++    +
Sbjct: 283 LSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVE 342

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
               D A  ++ +MK+ G S  +   ++L+
Sbjct: 343 HGPNDQAFILVEKMKSNGISPSIVTYNLLI 372



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 7/239 (2%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+A  Y  +I    +AG+   A+ ++DEM      PN   +  +I+ H K G L+    +
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M   G  P   TY+ LL     +G++     L + M S  + P   TY+ L   L++
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 493 ----RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
               + ++ +  K L    T+G   D + S +L    KDG V  A   L+ + ++G+   
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIG---DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT 189

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
             I   L     +    E A            K D + Y +++  L + +   N + L+
Sbjct: 190 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 248



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 106/253 (41%), Gaps = 5/253 (1%)

Query: 222 EMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           +++ +   NG++     +N +I    +  +LE  +    ++ ++  K +  SY  ++  F
Sbjct: 246 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 305

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   +A  I + M   +   +   Y  +I +  + G  D A  L ++MK     PS 
Sbjct: 306 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 365

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR--PSAPMYVSLIESYAKAGKLDTALRLW 398
             +  L+  +    ++  + ++   +    HR  P A  Y +LI +    G +D AL L 
Sbjct: 366 VTYNLLIKGLCNQSQISEAEEIINSLS--NHRLIPDAVSYNTLISACCYRGNIDKALDLQ 423

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M   G +     +  +I     +G+L+    ++  M +   +P+ + ++ ++E ++  
Sbjct: 424 QRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKY 483

Query: 459 GQVDSAMKLYNSM 471
           G    A  L   M
Sbjct: 484 GNEIKAEDLRKEM 496


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 209/448 (46%), Gaps = 15/448 (3%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE 209
           + E+  +  Q +  M ++  + K+ N  D +L LF+   R    +P  + + +L   +  
Sbjct: 31  DTESHSNGTQLLISMRNLCWSGKLKN-IDEALDLFQGMARMK-PLPSVKDFTLLLGAIVR 88

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
            + +   +SL   M    S  GI   +   N VI  L +   +   +     VL +  K+
Sbjct: 89  LKHYTTAISLVKHMF---SSLGIEADTITLNIVINCLCRLKLVAFGF----SVLGTMFKL 141

Query: 269 DTQSYNVLMTLFLN----KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
             +   + +T  +N    +G   +A  + + MEK    LD  TY ++I  L K+G   AA
Sbjct: 142 GLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAA 201

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
           +   ++M+ERN++P+  ++++++D + K G +  ++ +  EM G G RP+   Y  LI+ 
Sbjct: 202 VGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQG 261

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
               G+   A  L DEM   G RP+  +  +++++  K GK+  A S+   M   G  P 
Sbjct: 262 LCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPD 321

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TY+ L+ ++    +++ AM++++ M S G  P +  +T+L+    K K ++ A  +L 
Sbjct: 322 VFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLE 381

Query: 505 EMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
           EM  MG+  DV+    L+  + + G    A      M   G   N      + +   K  
Sbjct: 382 EMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKEN 441

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVL 591
           L   A  L +   +S   +++V+Y+ +L
Sbjct: 442 LLSEAVSLAKAMEKSNLDLNIVIYSILL 469



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 165/400 (41%), Gaps = 41/400 (10%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL- 234
           D+  ++   R  + ++W  P    Y  + D L +    DG++S    +  + +  G+   
Sbjct: 197 DTLAAVGWLRKMEERNWK-PNVVVYSTIMDGLCK----DGLVSEALNLCSEMNGKGVRPN 251

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              Y  +IQ L    + + +     +++    + D Q  N+L+  F  +G   +A  +  
Sbjct: 252 LVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIG 311

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M       D  TY  +I       +++ A+++F  M  R   P   +F SL+    K  
Sbjct: 312 FMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDK 371

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            ++ +M +  EM   G  P    + +LI  + +AG+   A  L+  M   G  PN     
Sbjct: 372 NINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCA 431

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           +I++   K   L  A+S+   ME++        YS LL+   S+G++++A +L++S+   
Sbjct: 432 VILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGK 491

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEM---------------------------- 506
           GL+  +  YT ++  L K+  +D A  +L+ M                            
Sbjct: 492 GLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARS 551

Query: 507 -------KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRF 539
                  +  G+SVD + ++ ++ Y+     D  +R   F
Sbjct: 552 IKYLTIMRDKGFSVDAATTEFIINYLSTNEGDTKIREFLF 591



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 137/349 (39%), Gaps = 36/349 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  L K      +    +K+ + + K +   Y+ +M      GL  +A  +   M
Sbjct: 184 TYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEM 243

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR- 355
                  +  TY  +I  L   GR   A  L  EM +   RP   +   LVD+  K G+ 
Sbjct: 244 NGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKV 303

Query: 356 ----------------------------------LDTSMKVYMEMQGCGHRPSAPMYVSL 381
                                             ++ +M+V+  M   G  P   ++ SL
Sbjct: 304 MQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSL 363

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I  + K   ++ A+ L +EM   GF P+   +T +I    ++G+   A  +F +M + G 
Sbjct: 364 IHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQ 423

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +P   T + +L+       +  A+ L  +M  + L   +  Y+ LL  +     ++ A +
Sbjct: 424 VPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWE 483

Query: 502 ILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
           +   +   G  ++V    +++  + K GS+D A   L  M  +G   NN
Sbjct: 484 LFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNN 532



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 3/244 (1%)

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+     +LI      G +  A+ L D M    +  +   + ++I    K+G    A
Sbjct: 142 GLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAA 201

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           +     ME   + P    YS +++     G V  A+ L + M   G+RP L TY  L+  
Sbjct: 202 VGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQG 261

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTN 548
           L        A  +L EM  MG   D+   ++L+  + K+G V  A   + FM  +G   +
Sbjct: 262 LCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPD 321

Query: 549 NFIVRQLFE-SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
            F    L    C++N + E+ + +    V      D+V++TS++    + ++     HL+
Sbjct: 322 VFTYNSLIHIYCLQNKMNEAMR-VFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLL 380

Query: 608 AILS 611
             +S
Sbjct: 381 EEMS 384


>gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
          Length = 700

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 114/496 (22%), Positives = 218/496 (43%), Gaps = 43/496 (8%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K+  LE S   F ++L    K D  ++  L++     GLP +A E +E M 
Sbjct: 176 YNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPKRAVEWFEKMP 235

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  T   MI +  ++G ++ A+ L+   +   +R     F++L+   G AG  D
Sbjct: 236 SFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYD 295

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + +Y EM+  G +P+  +Y  L++S  KA +   A  +  ++   GF PN+  +  +I
Sbjct: 296 GCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALI 355

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-L 476
            ++ ++   + A+ I+  M+  G   T   Y+ LL M A  G VD A +++  M S+G  
Sbjct: 356 RAYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTC 415

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P   T+++L+T+ +    V  A   L EM+  G+   +   + ++  Y K   VD  +R
Sbjct: 416 EPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVR 475

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   GI  ++      F  C+ N + ++    +   +E   K    L   V+  LV
Sbjct: 476 TFEQVLELGIEPDD-----RFCGCLLNVMTQTPTEEIGKLIECVEKAKPKL-GRVVKMLV 529

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
             ++E  E  ++      K +A                       E    I  ++ +   
Sbjct: 530 --EEENCEEGVL------KKEAS----------------------ELIDSIGSDVNKA-- 557

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
             ++N L++  V + ++ +A  + ++  E  ++   +       WSL +++LS+GAAL A
Sbjct: 558 --YLNCLIDLCVNLNKLEKACEILQLGLEYDIY-SGLQSKSATQWSLHLKSLSLGAALTA 614

Query: 716 VMHTLHRFRKRMLYYG 731
           +   ++   +  L  G
Sbjct: 615 LHVWMNDLSEAALTSG 630



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 34/229 (14%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-------------- 223
           + +LSL+  A+ + W +     +  L  +   + ++DG L++++EM              
Sbjct: 260 EMALSLYDRARTEKWRI-DPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNR 318

Query: 224 ----------------VH-DSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
                           +H D   NG    +S Y  +I+   +A   E +   ++++    
Sbjct: 319 LLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKG 378

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-KGECSLDGSTYELMIPSLAKSGRLDAA 324
            ++    YN L+++  + G   +AFEI++ M+  G C  D  T+  +I   +  GR+  A
Sbjct: 379 LELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEA 438

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
               +EM+E  F P+  +  SL+   GKA ++D  ++ + ++   G  P
Sbjct: 439 EAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEP 487



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%)

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y   ++ + K+  L+ + +L+DEM   G +P+   FT +I    + G    A+  F  M
Sbjct: 175 LYNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPKRAVEWFEKM 234

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   T + +++ +  +G V+ A+ LY+   +   R    T++ L+ +       
Sbjct: 235 PSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNY 294

Query: 497 DVAAKILLEMKTMG 510
           D    I  EMK++G
Sbjct: 295 DGCLNIYEEMKSLG 308


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   +++P D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 91  AVECYRLTREHKFWLPFDTCRKVL-EHLMKLKYFKLVWGFYEEFLECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +     K   + ++   F  +     +    SYN LM  ++  G   + F++  +M   
Sbjct: 147 ILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L+ A  L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++  + K+  V   +K+L EM+  G++  V   +VLM
Sbjct: 387 TGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLM 429



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 162/385 (42%), Gaps = 3/385 (0%)

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDS--DCKIDTQSYNVLMTLFLNKGLPYKAFE 291
           +FS    +IQ +        +   F  +L++  + + D   ++ L+T +L  G    A E
Sbjct: 34  MFSEAKSLIQVVVSRKGKGSASAVFAAILETKGNQRSDIYVFSGLITAYLESGFLRDAVE 93

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
            Y    + +  L   T   ++  L K          ++E  E  +  S   F  L     
Sbjct: 94  CYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFC 153

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K G +  +  V+  +   G RPS   Y +L+  Y + G LD   +L   M  +G  P+  
Sbjct: 154 KEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVY 213

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            ++++I    K  K+D A  +F +M   G +P   T++ L++ H  +G+VD AM++Y  M
Sbjct: 214 TYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSV 530
            S  L P L TY  L+  L K+  ++ A  ++ EM   G   D ++ + ++    K+G +
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDL 333

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D A    + M    IR ++     L     +      A+ ++   +    K D   YT +
Sbjct: 334 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMI 393

Query: 591 LAHLVRCQDEQNERHLMAILSATKH 615
           +  + +  D      L+  +    H
Sbjct: 394 INEVCKKGDVGKGSKLLKEMQXDGH 418


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 142/294 (48%), Gaps = 3/294 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + L +EMV  +    +     YN ++  L K  K++ +      +L +  K D  +Y+ L
Sbjct: 254 IGLLNEMVLKTINPNVY---TYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL 310

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +       KA  ++ +M     + D  TY ++I    K+  +D A+ LF+EM ++N 
Sbjct: 311 MDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    ++SL+D + K+GR+     +  EM+  G       Y SLI+   K G LD A+ 
Sbjct: 371 VPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIA 430

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+++M+    RPN   FT++++   K G+L  A  +F D+   G+     TY+ ++  H 
Sbjct: 431 LFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHC 490

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             G ++ A+ + + M   G  P   T+  ++  L K+   D A K+L +M   G
Sbjct: 491 KQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 173/404 (42%), Gaps = 16/404 (3%)

Query: 213 FDGMLSLFDEMVHDSSKNGISL----------FSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           F+ +L  F +M H S+   +S               N +I       ++   +    K+L
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
                 DT + N L+     KG   KA   ++ +      L+  +Y  +I  + K G   
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 181

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
           AAIK  +++  R  +P   ++ +++D+M K   +  +  ++ EM   G       Y +LI
Sbjct: 182 AAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLI 241

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
             +   GKL  A+ L +EM +    PN   + +++++  K GK+  A S+   M +A   
Sbjct: 242 YGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVK 301

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   TYS L++ +    +V  A  ++N+M+  G+ P + TYT L+    K K+VD A  +
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNL 361

Query: 503 LLEM--KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
             EM  K M   + V+ S ++    K G + +    +  M   G   +      L +   
Sbjct: 362 FKEMHQKNMVPGI-VTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLC 420

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV---RCQDEQ 601
           KN   + A  L     +   + ++  +T +L  L    R +D Q
Sbjct: 421 KNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQ 464



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 149/340 (43%), Gaps = 1/340 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  + K   +  +Y  F ++       D  +YN L+  F   G   +A  +   M 
Sbjct: 202 YNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMV 261

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + +  TY +++ +L K G++  A  +   M +   +P    +++L+D       + 
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  V+  M   G  P    Y  LI  + K   +D AL L+ EM      P    ++ +I
Sbjct: 322 KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   KSG++     +  +M   G      TYS L++    +G +D A+ L+N M    +R
Sbjct: 382 DGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR 441

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P + T+T LL  L K   +  A ++  ++ T GY ++V   +V++  + K G ++ AL  
Sbjct: 442 PNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTM 501

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
           L  M  +G   N F    +  +  K    + A+ LL   +
Sbjct: 502 LSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMI 541



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 100/208 (48%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y +L+  F    +  +A  +++ M +        TY  +I  L KSGR+     L 
Sbjct: 338 DVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLI 397

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM++R        ++SL+D + K G LD ++ ++ +M+    RP+   +  L++   K 
Sbjct: 398 DEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKG 457

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+L  A  ++ ++   G+  N   + ++I  H K G L+ A+++ + ME  G +P   T+
Sbjct: 458 GRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTF 517

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGL 476
             ++       + D A KL   M + GL
Sbjct: 518 ETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 105/244 (43%), Gaps = 6/244 (2%)

Query: 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFS------AYNRVIQYLAKADKLEMSYCCF 258
           DV+  S   DG   +++        N +SL         Y  +I    K   ++ +   F
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           K++   +      +Y+ L+      G     +++ + M       D  TY  +I  L K+
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKN 422

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G LD AI LF +MK++  RP+   F  L+D + K GRL  + +V+ ++   G+  +   Y
Sbjct: 423 GHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY 482

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             +I  + K G L+ AL +  +M   G  PN   F  II +  K  + D A  +   M  
Sbjct: 483 NVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIA 542

Query: 439 AGFL 442
            G L
Sbjct: 543 RGLL 546



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/293 (18%), Positives = 114/293 (38%), Gaps = 36/293 (12%)

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            +D ++  +  M    H P    +  +++S+AK     TA+ L   + + G +P+     
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I      G++    S+   + + G+ P   T + L++     GQV  A+  ++ + + 
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 475 GL-----------------------------------RPGLSTYTALLTLLAKRKLVDVA 499
           G                                    +P +  Y  ++  + K +LV  A
Sbjct: 159 GFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEA 218

Query: 500 AKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +  EM   G S DV   + L+  +   G +  A+  L  M    I  N +    L ++
Sbjct: 219 YGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
             K    + AK +L   +++  K D++ Y++++       + +  +H+   +S
Sbjct: 279 LCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMS 331


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 153/318 (48%), Gaps = 5/318 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLE 252
           VP    Y +LFD L+ + D   MLSLF + +    KNG+++     + ++  L K  K+ 
Sbjct: 165 VPDGFTYSILFDGLSRNGDSKAMLSLFGKYL----KNGVTIGDYTCSILLNGLCKDGKVS 220

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
           ++    + ++++        YN L+  +   G    AF  +  M+      D  TY  +I
Sbjct: 221 IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI 280

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L K+ R+  A  L  EM++    P+   F +L+D+ G+ G+L+    V  EMQ  G +
Sbjct: 281 NGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 340

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y S++ ++ K GK+  A+ + D+M      PN  ++  II+++ + G  D A  +
Sbjct: 341 PNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFIL 400

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M+  G  P+  TY+ L++   +  Q+  A ++ NS+++  L P   +Y  L++    
Sbjct: 401 VEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCY 460

Query: 493 RKLVDVAAKILLEMKTMG 510
           R  +D A  +   M   G
Sbjct: 461 RGNIDKALDLQQRMHKYG 478



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/469 (21%), Positives = 203/469 (43%), Gaps = 23/469 (4%)

Query: 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDECY-VMLFDVLNESRDFDGMLSLFDEMVHDS 227
           QA     D   ++ + R   R     P    Y V++  +    R  D  + +FDEM   +
Sbjct: 35  QACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDA-VEVFDEMTERA 93

Query: 228 S-KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
              N I+    YN +I    K   LE  +    +++    K +  +YNVL++     G  
Sbjct: 94  VLPNHIT----YNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRM 149

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +   + + M   +   DG TY ++   L+++G   A + LF +  +          + L
Sbjct: 150 GETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSIL 209

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           ++ + K G++  + +V   +   G  P+  +Y +LI  Y + G+L+ A   + +M+    
Sbjct: 210 LNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI 269

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
           +P+   +  +I    K+ ++  A  +  +M+  G  PT  T++ L++ +  +GQ++    
Sbjct: 270 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 329

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYI 525
           + + M   GL+P + +Y +++    K   +  A  IL +M       +    + ++  Y+
Sbjct: 330 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 389

Query: 526 KDGSVDHALRWLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
           + G  D A   +  M S+GI     T N +++ L   C ++ + E A+ ++ +       
Sbjct: 390 EHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL---CNQSQISE-AEEIINSLSNHRLI 445

Query: 582 VDLVLYTSVLA------HLVRCQDEQNERHLMAILSATKHKAHAFLCGL 624
            D V Y ++++      ++ +  D Q   H   I S T    H  + GL
Sbjct: 446 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKS-TVRTYHQLISGL 493



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 152/357 (42%), Gaps = 2/357 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           A+N+ +Q    A  L  +    +++  D     +  SYNV++      G    A E+++ 
Sbjct: 29  AWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDE 88

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +     +  TY  MI    K G L+A  +L  +M     +P+   +  L+  + +AGR
Sbjct: 89  MTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGR 148

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  +  +  EM      P    Y  L +  ++ G     L L+ +    G        ++
Sbjct: 149 MGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSI 208

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           ++    K GK+ IA  +   +  AG +PT   Y+ L+  +  +G+++ A   +  M S  
Sbjct: 209 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 268

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           ++P   TY AL+  L K + +  A  +L+EM+  G +  V   + L+  Y + G ++   
Sbjct: 269 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 328

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             L  M  +G++ N      +  +  KN     A  +L+         +  +Y +++
Sbjct: 329 IVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAII 385



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/298 (19%), Positives = 125/298 (41%), Gaps = 38/298 (12%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  L +   ++ + +G  S F +M    S++       YN +I  L KA+++  
Sbjct: 235 VPTRVIYNTLINGYCQTGELEGAFSTFGQM---KSRHIKPDHITYNALINGLCKAERITN 291

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++ D+      +++N L                                   I 
Sbjct: 292 AQDLLMEMQDNGVNPTVETFNTL-----------------------------------ID 316

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  ++G+L+    +  EM+E   +P+   + S+V++  K G++  ++ +  +M      P
Sbjct: 317 AYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLP 376

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +A +Y ++I++Y + G  D A  L ++M+  G  P+   + ++I+      ++  A  I 
Sbjct: 377 NAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEII 436

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
             +     +P   +Y+ L+      G +D A+ L   M   G++  + TY  L++ L 
Sbjct: 437 NSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLG 494



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 2/240 (0%)

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGL 412
           GR     + +  +   G RP    +   +++   AG L  A+ +   M R     PN   
Sbjct: 6   GRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFS 65

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           + ++I    ++G+   A+ +F +M     LP   TY+ +++ H   G +++  +L + M 
Sbjct: 66  YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMV 125

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVD 531
             GL+P   TY  LL+ L +   +   + +L EM +     D     +L   + ++G   
Sbjct: 126 CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSK 185

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             L        +G+   ++    L     K+     A+ +L++ V +      V+Y +++
Sbjct: 186 AMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLI 245



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 106/253 (41%), Gaps = 5/253 (1%)

Query: 222 EMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           +++ +   NG++     +N +I    +  +LE  +    ++ ++  K +  SY  ++  F
Sbjct: 294 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 353

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   +A  I + M   +   +   Y  +I +  + G  D A  L ++MK     PS 
Sbjct: 354 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 413

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR--PSAPMYVSLIESYAKAGKLDTALRLW 398
             +  L+  +    ++  + ++   +    HR  P A  Y +LI +    G +D AL L 
Sbjct: 414 VTYNLLIKGLCNQSQISEAEEIINSLS--NHRLIPDAVSYNTLISACCYRGNIDKALDLQ 471

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M   G +     +  +I     +G+L+    ++  M +   +P+ + ++ ++E ++  
Sbjct: 472 QRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKY 531

Query: 459 GQVDSAMKLYNSM 471
           G    A  L   M
Sbjct: 532 GNEIKAEDLRKEM 544


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 171/365 (46%), Gaps = 2/365 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           +A   +I  L  A ++  +   F +  L  + K  T++YN L+  ++  G    A  + +
Sbjct: 269 NAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVLD 328

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M +   + D +TY L++ +  ++GR ++A  L +EM+    +PS  +F+ ++      G
Sbjct: 329 EMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRG 388

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
               +  V  EM   G +P    Y  +I+++ K   L  A+ +++ MR  G  P+   + 
Sbjct: 389 DWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWN 448

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I++H K G+ D AM +F +M  +   P  +TY+ ++ +     +      + + M   
Sbjct: 449 TLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQ 508

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           GL P + TYT L+ +  +      A   +  MK  G     +    L+  Y + G  DHA
Sbjct: 509 GLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHA 568

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L  ++ M + G+  +  ++  L  +  ++     A  +L+   E+  + D++ YT+++  
Sbjct: 569 LNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKA 628

Query: 594 LVRCQ 598
           L+R +
Sbjct: 629 LIRVE 633



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 143/328 (43%), Gaps = 3/328 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            P +  Y +L D    +  ++    L  EM  D  K    +FS   R++         + 
Sbjct: 336 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFS---RILAGFRDRGDWQK 392

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++   +++  S  + D   YNV++  F        A +++  M       D  T+  +I 
Sbjct: 393 AFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLID 452

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  K GR D A++LF+EM+E N  P    +  +++ +G+  R      +  EM+  G  P
Sbjct: 453 AHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVP 512

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y +L++ Y ++G+   A+   + M+  G +P+  ++  ++ ++A+ G  D A+++ 
Sbjct: 513 NIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVV 572

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G   +    + L+       +V  A  +   M     RP + TYT L+  L + 
Sbjct: 573 KAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRV 632

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVL 521
           +  D    I  EM T G + D  A  +L
Sbjct: 633 EQFDKVPVIYEEMITSGCAPDRKARAML 660



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 135/309 (43%), Gaps = 1/309 (0%)

Query: 215 GMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           G L   + ++ + S+ G++   A Y+ ++    +A + E +    K++     K  +  +
Sbjct: 318 GSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVF 377

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + ++  F ++G   KAF +   M       D   Y +MI +  K   L  A+ +F  M+ 
Sbjct: 378 SRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRG 437

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    + +L+D+  K GR D +M+++ EM+     P    Y  +I    +  +   
Sbjct: 438 EGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVG 497

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
              +  EM+  G  PN   +T +++ + +SG+   A+     M+  G  P+P+ Y  L+ 
Sbjct: 498 VETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVN 557

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +A  G  D A+ +  +M + GL        +L+    + + V  A  +L  MK   +  
Sbjct: 558 AYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRP 617

Query: 514 DVSASDVLM 522
           DV     LM
Sbjct: 618 DVITYTTLM 626



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 115/262 (43%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    K + L  +   F ++     + D  ++N L+      G    A E+++ M 
Sbjct: 412 YNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMR 471

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C    +TY +MI  L +  R      +  EMKE+   P+   + +LVD  G++GR  
Sbjct: 472 ESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYK 531

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++     M+  G +PS  MY +L+ +YA+ G  D AL +   MR  G   +  +   +I
Sbjct: 532 EAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLI 591

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  +  ++  A S+   M+   F P   TY+ L++      Q D    +Y  M ++G  
Sbjct: 592 NAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCA 651

Query: 478 PGLSTYTALLTLLAKRKLVDVA 499
           P       L + L   K   VA
Sbjct: 652 PDRKARAMLRSALRYMKHTRVA 673



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 130/298 (43%), Gaps = 9/298 (3%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAF---EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           D  SY+ L+   LN   P  A     +   +       D   +  +I + A++   DAA+
Sbjct: 194 DLASYSHLLASLLNTRDPPDAAILERLLGDLRDSRLEPDAPLFSDLISAFARAALPDAAL 253

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIES 384
           +L    +     P  N   +L+ ++G AGR+  +  +++E    G  +P    Y +L++ 
Sbjct: 254 ELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLKG 313

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           Y K G L  A  + DEM   G  P+   ++++++++ ++G+ + A  +  +ME  G  P+
Sbjct: 314 YVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPS 373

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
              +S +L      G    A  +   M ++G++P    Y  ++    K   +  A  +  
Sbjct: 374 SYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFN 433

Query: 505 EMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS----GIRTNNFIVRQLFE 557
            M+  G   DV   + L+  + K G  D A+   + M  S    G  T N ++  L E
Sbjct: 434 RMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGE 491



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 114/250 (45%), Gaps = 10/250 (4%)

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSM-GKAGRLDTSM--KVYMEMQGCGHRPSAPMYVSL 381
           ++L   ++E NF P    ++ L+ S+       D ++  ++  +++     P AP++  L
Sbjct: 180 LRLLALIREHNFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRDSRLEPDAPLFSDL 239

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I ++A+A   D AL L    +  G  P     T +I +   +G++  A ++F +   AG 
Sbjct: 240 ISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGE 299

Query: 442 L-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           + P    Y+ LL+ +   G + +A  + + M+  G+ P  +TY+ L+    +    + A 
Sbjct: 300 IKPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESAR 359

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFES- 558
            +L EM+  G          ++   +D G    A   LR M +SG++ +      + ++ 
Sbjct: 360 ILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTF 419

Query: 559 ----CMKNAL 564
               C+ +A+
Sbjct: 420 GKYNCLGHAM 429



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 18/229 (7%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++ LF+   R+S   PG   Y ++ ++L E   + G+ ++  EM     +  +     
Sbjct: 461 DCAMELFK-EMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEM---KEQGLVPNIIT 516

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++    ++ + + +  C + +     K     Y+ L+  +  +GL   A  + ++M 
Sbjct: 517 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR 576

Query: 298 KGECSLDGSTYEL--MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
                L+ ST  L  +I +  +  R+  A  + Q MKE +FRP    + +L+ ++ +  +
Sbjct: 577 AD--GLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQ 634

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
            D    +Y EM   G  P         +  A+A  L +ALR     R+A
Sbjct: 635 FDKVPVIYEEMITSGCAP---------DRKARA-MLRSALRYMKHTRVA 673



 Score = 45.4 bits (106), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 17/209 (8%)

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKS-GKLDIAM--SIFTDMERAGFLPTPSTYSCL 451
           LRL   +R   F P+   ++ ++ S   +    D A+   +  D+  +   P    +S L
Sbjct: 180 LRLLALIREHNFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRDSRLEPDAPLFSDL 239

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM----- 506
           +   A +   D+A++L  S  + GL P  +  TAL++ L     V  A  + LE      
Sbjct: 240 ISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGE 299

Query: 507 ---KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
              +T  Y+       +L  Y+K GS+ +A   L  M   G+  +      L ++  +  
Sbjct: 300 IKPRTRAYNA------LLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAG 353

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLA 592
            +ESA+ LL+       K    +++ +LA
Sbjct: 354 RWESARILLKEMEADGVKPSSYVFSRILA 382


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 175/366 (47%), Gaps = 4/366 (1%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           ++++   L++    D  + +  W   +S + P   CY +L D   +   +    S + E+
Sbjct: 135 IINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLEL 194

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           +       +     Y  +++    +  LE +   F ++           YN  +   +  
Sbjct: 195 LEARC---VPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKG 251

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           G   KA EI+E M++  C    +TY ++I    K+ +   A+K+F EM+ +  +P+   F
Sbjct: 252 GDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTF 311

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +LV++  + G  + + +++ ++Q  G  P    Y +L+E+Y++AG    A  ++  M+ 
Sbjct: 312 TALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQH 371

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G  P+   + ++++++ ++G  + A ++F  M+R G  PT  ++  LL  ++ +G+V  
Sbjct: 372 MGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAK 431

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM- 522
             ++ N M  +G++P      ++L L  +    +   ++L  M+   Y  D+S  ++L+ 
Sbjct: 432 CEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILIN 491

Query: 523 VYIKDG 528
           +Y + G
Sbjct: 492 IYGRAG 497



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 158/340 (46%), Gaps = 3/340 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+  + P    Y    D L +  D    + +F+ M  D  +   +    Y  +I    KA
Sbjct: 230 RKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTA---TYTMLINLYGKA 286

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K  M+   F ++    CK +  ++  L+  F  +GL  KA EI+E +++     D   Y
Sbjct: 287 SKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAY 346

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++ + +++G    A ++F  M+     P    +  +VD+ G+AG  + +  V+  M+ 
Sbjct: 347 NALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKR 406

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+   ++ L+ +Y++AGK+     + ++M  +G +P+  +   ++  + + G+ + 
Sbjct: 407 LGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEK 466

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
              + T ME+  +    STY+ L+ ++  +G      +L+ S+ +  L P + T+T+ + 
Sbjct: 467 MEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIG 526

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG 528
             ++RK  +   ++  EM   G   D   + VL+    +G
Sbjct: 527 AYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNG 566



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 142/332 (42%), Gaps = 4/332 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
            D+  ++ +F   KR     P    Y ML ++  ++      L +F EM     K  I  
Sbjct: 252 GDTQKAVEIFERMKRDRCQ-PSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICT 310

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F+A   ++   A+    E +   F+++ ++  + D  +YN LM  +   G PY A EI+ 
Sbjct: 311 FTA---LVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFS 367

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M+   C  D ++Y +M+ +  ++G  + A  +F+ MK     P+      L+ +  +AG
Sbjct: 368 LMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAG 427

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++    ++  +M   G +P   +  S++  Y + G+ +    +   M    +  +   + 
Sbjct: 428 KVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYN 487

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I  + ++G       +F  +     +P   T++  +  ++   Q +  ++++  M  A
Sbjct: 488 ILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDA 547

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           G  P   T   LL+  +    +     ++  M
Sbjct: 548 GCYPDGGTAKVLLSACSNGDQIQEVTTVIRTM 579


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 166/362 (45%), Gaps = 1/362 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++    K +++EM++  + ++          ++N+++ +   +G   KA E    ME 
Sbjct: 196 NDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEG 255

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                +  +Y  +I   +  G ++ A ++   M+ +   P    + SL+  M K GRL+ 
Sbjct: 256 LGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEE 315

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  ++ +M   G  P+A  Y +LI+ Y   G L+ A    DEM   G  P+   + +++ 
Sbjct: 316 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 375

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +    G++  A  +  +M + G +P   TY+ L+  ++  G    A  L+N M S G+ P
Sbjct: 376 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEP 435

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWL 537
              TYT+L+ +L++R  +  A  +  ++   G S DV   + ++  +  +G+V+ A   L
Sbjct: 436 THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLL 495

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
           + M    +  +      L +   +    E A+ LL+       K D + Y ++++   R 
Sbjct: 496 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRR 555

Query: 598 QD 599
            D
Sbjct: 556 GD 557



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 152/322 (47%), Gaps = 1/322 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  + K  +LE +   F K+++     +  +YN L+  + NKG   +AF   + M
Sbjct: 299 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 358

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K       STY L++ +L   GR+  A  + +EM+++   P    +  L++   + G  
Sbjct: 359 VKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNA 418

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++ EM   G  P+   Y SLI   ++  ++  A  L++++   G  P+  +F  +
Sbjct: 419 KKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAM 478

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++ H  +G ++ A  +  +M+R    P   T++ L++     G+V+ A  L + M   G+
Sbjct: 479 VDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGI 538

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P   +Y  L++   +R  +  A ++  EM ++G++  +   + L+    K+   D A  
Sbjct: 539 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 598

Query: 536 WLRFMGSSGIRTNNFIVRQLFE 557
            L+ M + GI  ++     L E
Sbjct: 599 LLKEMVNKGISPDDSTYLSLIE 620



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 94/240 (39%), Gaps = 41/240 (17%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+   +P    Y +L +  +   +      L +EM+   SK        Y  +I  L++ 
Sbjct: 394 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML---SKGIEPTHVTYTSLIYVLSRR 450

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
           ++++ +   F+K+LD     D   +N ++      G   +AF + + M++     D  T+
Sbjct: 451 NRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTF 510

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++    + G+++ A  L  EMK R  +P    + +L+   G+ G +  + +V  EM  
Sbjct: 511 NTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLS 570

Query: 369 CGHRPS--------------------------------AP---MYVSLIESYAKAGKLDT 393
            G  P+                                +P    Y+SLIE     G +DT
Sbjct: 571 IGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM---GNVDT 627



 Score = 42.0 bits (97), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++Q   +  K+E +     ++     K D  SYN L++ +  +G    AF + + M
Sbjct: 509 TFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEM 568

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                +    TY  +I  L K+   D A +L +EM  +   P  + + SL++ MG    L
Sbjct: 569 LSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTL 628


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 153/318 (48%), Gaps = 5/318 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLE 252
           VP    Y +LFD L+ + D   MLSLF + +    KNG+++     + ++  L K  K+ 
Sbjct: 302 VPDGFTYSILFDGLSRNGDSKAMLSLFGKYL----KNGVTIGDYTCSILLNGLCKDGKVS 357

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
           ++    + ++++        YN L+  +   G    AF  +  M+      D  TY  +I
Sbjct: 358 IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI 417

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L K+ R+  A  L  EM++    P+   F +L+D+ G+ G+L+    V  EMQ  G +
Sbjct: 418 NGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 477

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y S++ ++ K GK+  A+ + D+M      PN  ++  II+++ + G  D A  +
Sbjct: 478 PNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFIL 537

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M+  G  P+  TY+ L++   +  Q+  A ++ NS+++  L P   +Y  L++    
Sbjct: 538 VEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCY 597

Query: 493 RKLVDVAAKILLEMKTMG 510
           R  +D A  +   M   G
Sbjct: 598 RGNIDKALDLQQRMHKYG 615



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/469 (21%), Positives = 203/469 (43%), Gaps = 23/469 (4%)

Query: 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDECY-VMLFDVLNESRDFDGMLSLFDEMVHDS 227
           QA     D   ++ + R   R     P    Y V++  +    R  D  + +FDEM   +
Sbjct: 172 QACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDA-VEVFDEMTERA 230

Query: 228 S-KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
              N I+    YN +I    K   LE  +    +++    K +  +YNVL++     G  
Sbjct: 231 VLPNHIT----YNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRM 286

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +   + + M   +   DG TY ++   L+++G   A + LF +  +          + L
Sbjct: 287 GETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSIL 346

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           ++ + K G++  + +V   +   G  P+  +Y +LI  Y + G+L+ A   + +M+    
Sbjct: 347 LNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI 406

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
           +P+   +  +I    K+ ++  A  +  +M+  G  PT  T++ L++ +  +GQ++    
Sbjct: 407 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 466

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYI 525
           + + M   GL+P + +Y +++    K   +  A  IL +M       +    + ++  Y+
Sbjct: 467 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 526

Query: 526 KDGSVDHALRWLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
           + G  D A   +  M S+GI     T N +++ L   C ++ + E A+ ++ +       
Sbjct: 527 EHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL---CNQSQISE-AEEIINSLSNHRLI 582

Query: 582 VDLVLYTSVLA------HLVRCQDEQNERHLMAILSATKHKAHAFLCGL 624
            D V Y ++++      ++ +  D Q   H   I S T    H  + GL
Sbjct: 583 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKS-TVRTYHQLISGL 630



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/302 (19%), Positives = 126/302 (41%), Gaps = 38/302 (12%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
            +  VP    Y  L +   ++ + +G  S F +M    S++       YN +I  L KA+
Sbjct: 368 NAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM---KSRHIKPDHITYNALINGLCKAE 424

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           ++  +     ++ D+      +++N L                                 
Sbjct: 425 RITNAQDLLMEMQDNGVNPTVETFNTL--------------------------------- 451

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
             I +  ++G+L+    +  EM+E   +P+   + S+V++  K G++  ++ +  +M   
Sbjct: 452 --IDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK 509

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
              P+A +Y ++I++Y + G  D A  L ++M+  G  P+   + ++I+      ++  A
Sbjct: 510 DVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEA 569

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             I   +     +P   +Y+ L+      G +D A+ L   M   G++  + TY  L++ 
Sbjct: 570 EEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 629

Query: 490 LA 491
           L 
Sbjct: 630 LG 631



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 106/253 (41%), Gaps = 5/253 (1%)

Query: 222 EMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           +++ +   NG++     +N +I    +  +LE  +    ++ ++  K +  SY  ++  F
Sbjct: 431 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 490

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   +A  I + M   +   +   Y  +I +  + G  D A  L ++MK     PS 
Sbjct: 491 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 550

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR--PSAPMYVSLIESYAKAGKLDTALRLW 398
             +  L+  +    ++  + ++   +    HR  P A  Y +LI +    G +D AL L 
Sbjct: 551 VTYNLLIKGLCNQSQISEAEEIINSLS--NHRLIPDAVSYNTLISACCYRGNIDKALDLQ 608

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M   G +     +  +I     +G+L+    ++  M +   +P+ + ++ ++E ++  
Sbjct: 609 QRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKY 668

Query: 459 GQVDSAMKLYNSM 471
           G    A  L   M
Sbjct: 669 GNEIKAEDLRKEM 681


>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 111/513 (21%), Positives = 222/513 (43%), Gaps = 89/513 (17%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K   L+ +   F ++L+   K D  +++ +++      LP KA E +E M 
Sbjct: 179 YNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMP 238

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  D  TY  MI +  ++G +D A+KL+   +   +R     F++L+   G +G  D
Sbjct: 239 EFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFD 298

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + VY EM+  G +P+  +Y +L+++  +A +   A  ++ EM   G +P++G +  ++
Sbjct: 299 GCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALL 358

Query: 418 ESHAKSGKLDIAMSIFTDMERAG---FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++ ++   + A+ ++ +M+  G    +P   T+S L+ +++ SG+V  A  + N+M  A
Sbjct: 359 RAYGRARYAEDALIVYKEMKEKGSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEA 418

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKI---LLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           G  P +   T+L+    K    D   +    LLE+       D++  D            
Sbjct: 419 GFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLEL-------DITPDD------------ 459

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                 RF G                 CM N + +S K                     L
Sbjct: 460 ------RFCG-----------------CMLNVMTQSPK-------------------EEL 477

Query: 592 AHLVRCQDEQNER--HLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYE 649
             L+ C D+ N +  +++ +L   ++    F          RK+       E F  I  +
Sbjct: 478 GKLIDCIDKANPKLGNVVKLLLEEQNGEGTF----------RKE-----ASELFDSISAD 522

Query: 650 LEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSV 709
           +++     + N L++  V +  + +A  ++ +    +++   I       WSL +++LS+
Sbjct: 523 VKKA----YCNCLIDLCVNLNLLEKACELFDLGLTLEIYID-IQSKSPTQWSLHLKSLSL 577

Query: 710 GAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG 742
           GAAL A+   ++   K +     +P  + + TG
Sbjct: 578 GAALTALHIWMNDLSKAVEVGEELPAVLGINTG 610



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 133/282 (47%), Gaps = 6/282 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +   V  + R+ D    LFDEM+    K     FS      +  +  +K   +   F+
Sbjct: 179 YNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNK---AVEWFE 235

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+ +  C  D  +Y+ ++  +   G    A ++Y+     +  +D  T+  +I     SG
Sbjct: 236 KMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSG 295

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D  + +++EMK    +P+  I+ +L+D+MG+A R   +  +Y EM   G +PS   Y 
Sbjct: 296 NFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYA 355

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAG---FRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +L+ +Y +A   + AL ++ EM+  G     P+   F+ +I  ++ SGK+  A ++   M
Sbjct: 356 ALLRAYGRARYAEDALIVYKEMKEKGSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAM 415

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
             AGF P     + L++ +  + + D  ++ ++ +    + P
Sbjct: 416 LEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITP 457


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 175/366 (47%), Gaps = 4/366 (1%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           ++++   L++    D  + +  W   +S + P   CY +L D   +   +    S + E+
Sbjct: 65  IINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLEL 124

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           +       +     Y  +++    +  LE +   F ++           YN  +   +  
Sbjct: 125 LEARC---VPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKG 181

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           G   KA EI+E M++  C    +TY ++I    K+ +   A+K+F EM+ +  +P+   F
Sbjct: 182 GDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTF 241

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +LV++  + G  + + +++ ++Q  G  P    Y +L+E+Y++AG    A  ++  M+ 
Sbjct: 242 TALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQH 301

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            G  P+   + ++++++ ++G  + A ++F  M+R G  PT  ++  LL  ++ +G+V  
Sbjct: 302 MGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAK 361

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM- 522
             ++ N M  +G++P      ++L L  +    +   ++L  M+   Y  D+S  ++L+ 
Sbjct: 362 CEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILIN 421

Query: 523 VYIKDG 528
           +Y + G
Sbjct: 422 IYGRAG 427



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 158/335 (47%), Gaps = 4/335 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+  + P    Y    D L +  D    + +F+ M  D  +   +    Y  +I    KA
Sbjct: 160 RKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTA---TYTMLINLYGKA 216

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K  M+   F ++    CK +  ++  L+  F  +GL  KA EI+E +++     D   Y
Sbjct: 217 SKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAY 276

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++ + +++G    A ++F  M+     P    +  +VD+ G+AG  + +  V+  M+ 
Sbjct: 277 NALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKR 336

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+   ++ L+ +Y++AGK+     + ++M  +G +P+  +   ++  + + G+ + 
Sbjct: 337 LGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEK 396

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
              + T ME+  +    STY+ L+ ++  +G      +L+ S+ +  L P + T+T+ + 
Sbjct: 397 MEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIG 456

Query: 489 LLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLM 522
             ++RK  +   ++  EM   G Y    +A +VL+
Sbjct: 457 AYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKNVLL 491



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 138/317 (43%), Gaps = 4/317 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
            D+  ++ +F   KR     P    Y ML ++  ++      L +F EM     K  I  
Sbjct: 182 GDTQKAVEIFERMKRDRCQ-PSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICT 240

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F+A   ++   A+    E +   F+++ ++  + D  +YN LM  +   G PY A EI+ 
Sbjct: 241 FTA---LVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFS 297

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M+   C  D ++Y +M+ +  ++G  + A  +F+ MK     P+      L+ +  +AG
Sbjct: 298 LMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAG 357

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++    ++  +M   G +P   +  S++  Y + G+ +    +   M    +  +   + 
Sbjct: 358 KVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYN 417

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I  + ++G       +F  +     +P   T++  +  ++   Q +  ++++  M  A
Sbjct: 418 ILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDA 477

Query: 475 GLRPGLSTYTALLTLLA 491
           G  P   T   +L  +A
Sbjct: 478 GCYPDGGTAKNVLLKVA 494


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 152/329 (46%), Gaps = 1/329 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D+ +Y   +  +   GL   A  ++  M    C     TY  ++  L  +G +  A+ +F
Sbjct: 106 DSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVF 165

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             M+     P  +++A++V  +  AGR   +  +  +    G  P+  +Y +LI+ Y   
Sbjct: 166 AGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNV 225

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+ A+ +++ M + G  PN   +T +I    KS KLD AM +F+ M  AG +P   TY
Sbjct: 226 GDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTY 285

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++   S GQ+D A +L  SM ++GL P   T + L+  L K + V  A  +L  +  
Sbjct: 286 TALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQ 345

Query: 509 MGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G  V ++  + ++    K G    A R ++ + S G   +      L +   +      
Sbjct: 346 KGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSE 405

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           A  +L+  +E   +   V YT ++  LVR
Sbjct: 406 AMLVLDDMMEKGVQPSPVTYTIIIDELVR 434



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 131/312 (41%), Gaps = 36/312 (11%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN L+  + N G    A +++E M+   CS +  TY  +I    KS +LD A+ LF  M 
Sbjct: 215 YNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMV 274

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA----------------- 375
           +    P+   + +L+      G+LD + ++   M+  G  P+                  
Sbjct: 275 DAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVG 334

Query: 376 ------------------PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                              +Y SLI+   KAG+   A RL   +   GF P+   ++ +I
Sbjct: 335 EAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLI 394

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   +  +L  AM +  DM   G  P+P TY+ +++        D + K+ + M +AG++
Sbjct: 395 DGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIK 454

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P + TYT  +        ++ A  ++L M   G   ++   + L+  Y   G    A   
Sbjct: 455 PDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFST 514

Query: 537 LRFMGSSGIRTN 548
            + M ++G + N
Sbjct: 515 FKHMVANGCKPN 526



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 141/293 (48%), Gaps = 5/293 (1%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY--M 364
           TY  +I +   +G L A+ +    +    F P  + + S V    +AG L  + +++  M
Sbjct: 74  TYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLM 133

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
            ++GC    +A  Y +L+     AG +  A+ ++  M+  G  P+  ++  ++     +G
Sbjct: 134 PLRGCVR--TAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAG 191

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           +   A ++ +D    GF P    Y+ L++ + + G ++ A+ ++  M   G  P + TYT
Sbjct: 192 RTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYT 251

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSS 543
            L++   K + +D A  +   M   G   + V+ + ++     DG +D A R L+ M +S
Sbjct: 252 ELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENS 311

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           G+  N +    L ++  K+     A+ LL + ++   KV+ ++YTS++  L +
Sbjct: 312 GLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCK 364



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/428 (20%), Positives = 168/428 (39%), Gaps = 47/428 (10%)

Query: 87  NEWTEEI--------EYLDES----GSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASA 134
           NEWT  +        E + E+    GS+I   KGI+  E  +    ++ G+ K    A+A
Sbjct: 316 NEWTCSVLIDALCKHERVGEAQLLLGSLIQ--KGIKVNEIVYTS--LIDGLCKAGRFAAA 371

Query: 135 VAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYV 194
             ++++ +    + P+  T    +  + +   +++A+ V++D             +    
Sbjct: 372 -DRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDD-----------MMEKGVQ 419

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y ++ D L      DG   + D+M+    K  +  ++ + R   +  + +  E  
Sbjct: 420 PSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHM 479

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM--- 311
                 ++D     +  +YN L+  + N GL  +AF  ++ M    C  +  +Y ++   
Sbjct: 480 ---MLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRL 536

Query: 312 ---------IP----SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                    IP    S+ K   +     L +EM +       +I+   + S+ +  RLD 
Sbjct: 537 LIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDE 596

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  + +EMQ     PS  +Y S+I    +   L  AL   D M  +G+ P    +  II 
Sbjct: 597 AKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIIS 656

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           S  + G +  A  +F DM    +      +  L++     G V     L + M     RP
Sbjct: 657 SLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKNYRP 716

Query: 479 GLSTYTAL 486
             + Y  L
Sbjct: 717 SDALYARL 724



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/337 (18%), Positives = 122/337 (36%), Gaps = 53/337 (15%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT-LFLNKGLPYKAFEIYESM 296
           Y  +I  L KA +   +    + ++      D  +Y+ L+  L   K L      + + M
Sbjct: 355 YTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMM 414

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           EKG       TY ++I  L +    D + K+  +M     +P    +   V S    GR+
Sbjct: 415 EKG-VQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRM 473

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +  + + M   G  P+   Y +LI  YA  G    A   +  M   G +PN   +T++
Sbjct: 474 EDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVL 533

Query: 417 IE---------------------------------------------------SHAKSGK 425
           +                                                    S  +  +
Sbjct: 534 LRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDR 593

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           LD A  +  +M+ A   P+   Y+ ++        +  A+   +SM  +G  P L +Y  
Sbjct: 594 LDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRH 653

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           +++ L +   +  A ++  +M +  Y+ +  A  +L+
Sbjct: 654 IISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILI 690



 Score = 40.0 bits (92), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 47/106 (44%)

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           N   +T +I ++  +G L  +    + + RAGF P    Y+  +  +  +G +  A +L+
Sbjct: 71  NLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLF 130

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
             M   G      TYTALL  L    +V  A  +   M+  G + D
Sbjct: 131 VLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPD 176


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 179/415 (43%), Gaps = 9/415 (2%)

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263
           F     S + +  + LF +M+       I  FS   +V+  +AK+   ++    F  +  
Sbjct: 41  FSTKRSSMNLEEEIDLFCKMIQSRPLPSIVDFS---KVLSKIAKSKNYDLVISLFHHMEV 97

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
                D  SYN+++           A  +   M K     D  T   +I    +  R+  
Sbjct: 98  CGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFD 157

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           AI L  +M+E  FRP   I+ +++D   K G ++ +++++  M+  G R  A  Y SL+ 
Sbjct: 158 AIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVA 217

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
               +G+   A RL  +M +    PN   FT +I+   K GK   AM ++ +M R    P
Sbjct: 218 GLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDP 277

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              TY+ L+      G+VD A ++ + M + G  P + TY  L+    K K VD   K+ 
Sbjct: 278 DVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLF 337

Query: 504 LEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSS-GIRTNNFIVRQLFESCMK 561
            EM   G   D ++ + ++  Y + G  D A      M S   IRT + +   L+  CM 
Sbjct: 338 REMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSIL---LYGLCM- 393

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616
           N   E A  L E   +S  ++D+  Y  V+  + +  + ++   L   LS    K
Sbjct: 394 NWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLK 448



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + LFD M  D  +        YN ++  L  + +   +    + ++  D   +  ++  +
Sbjct: 194 VELFDRMERDGVRADAV---TYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAV 250

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           + +F+ +G   +A ++YE M +     D  TY  +I  L   GR+D A ++   M  +  
Sbjct: 251 IDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGC 310

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + +L++   K+ R+D   K++ EM   G       Y ++I+ Y +AG+ D A  
Sbjct: 311 LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQE 370

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++  M     RPN   +++++     + +++ A+ +F +M+++      +TY+ ++    
Sbjct: 371 IFSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMC 427

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             G V+ A  L+ S++  GL+P + +YT +++   +++  D +  +  +M+  G
Sbjct: 428 KIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 481



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 129/321 (40%), Gaps = 52/321 (16%)

Query: 232 ISLFSAYNRVIQYLAKADKLE-MSY----CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
           I+ F   NRV   +    K+E M +      +  ++D  CKI               GL 
Sbjct: 146 INGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKI---------------GLV 190

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
             A E+++ ME+     D  TY  ++  L  SGR   A +L ++M  R+  P+   F ++
Sbjct: 191 NDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAV 250

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +D   K G+   +MK+Y EM      P    Y SLI      G++D A ++ D M   G 
Sbjct: 251 IDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGC 310

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL------------------------ 442
            P+   +  +I    KS ++D    +F +M + G +                        
Sbjct: 311 LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQE 370

Query: 443 --------PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
                   P   TYS LL     + +V+ A+ L+ +M  + +   ++TY  ++  + K  
Sbjct: 371 IFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIG 430

Query: 495 LVDVAAKILLEMKTMGYSVDV 515
            V+ A  +   +   G   DV
Sbjct: 431 NVEDAWDLFRSLSCKGLKPDV 451



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/294 (18%), Positives = 119/294 (40%), Gaps = 10/294 (3%)

Query: 118 DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVI--- 174
           D +   G++   +  +++   +    RW     L   +     VP ++  T  + V    
Sbjct: 198 DRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKE 257

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
                ++ L+    R+    P    Y  L + L      D    + D MV   +K  +  
Sbjct: 258 GKFSEAMKLYEEMTRRC-VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV---TKGCLPD 313

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              YN +I    K+ +++     F+++       DT +YN ++  +   G P  A EI+ 
Sbjct: 314 VVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFS 373

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M+      +  TY +++  L  + R++ A+ LF+ M++         +  ++  M K G
Sbjct: 374 RMDSRP---NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIG 430

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
            ++ +  ++  +   G +P    Y ++I  + +  + D +  L+ +M+  G  P
Sbjct: 431 NVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 89  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 144

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F + ++M+  
Sbjct: 145 ILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQAS 204

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D   +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 205 GVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLA 264

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 265 MEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 324

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 325 SCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 384

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           + TYT ++    K+  V   +K++ EM+  GY   V   +VLM
Sbjct: 385 IGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLM 427



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 148/340 (43%), Gaps = 1/340 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ ++T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 69  DIYVFSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 128

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 129 EESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 188

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+   RL   M+ +G +P+   ++++I    K  K+D    +F +M   G +P   T+
Sbjct: 189 GDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTF 248

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 249 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSM 308

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  +   M    IR ++     L     +      
Sbjct: 309 KGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVD 368

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           A+ +L   +    K ++  YT ++    +  D      LM
Sbjct: 369 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLM 408



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 143/319 (44%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  KE  FR  F+    +++ + K     
Sbjct: 63  KGTQRSDIYVFSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFK 122

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E   CG+  S   +  L+ S+ K G++  A  ++D +   G RP+   F  ++
Sbjct: 123 LVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 182

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K G L+    +   M+ +G  P   TYS L+       ++D   +L++ M   GL 
Sbjct: 183 NGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLV 242

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 243 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDL 302

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L +   K    E+A       ++   ++D V YT++++ L  
Sbjct: 303 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGL-- 360

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 361 CQEGRSVDAEKMLREMLSV 379


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 156/343 (45%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L  ++ + + F  +   ++E++       +  F   N
Sbjct: 74  AIECYRLTREHKFWVPFDTCRKVLEHMM-KLKYFKLVWGFYEEILECGYPASLYFF---N 129

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    S+N LM  ++  G   + F +  +M   
Sbjct: 130 ILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS 189

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM ++   P+   F +L+D   K+GR+D +
Sbjct: 190 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLA 249

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 250 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDG 309

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M SAGL+P 
Sbjct: 310 CCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPD 369

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 370 TGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 146/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  + K          +
Sbjct: 54  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKLKYFKLVWGFY 113

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   + +L+  Y + 
Sbjct: 114 EEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRL 173

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 174 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTF 233

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  SG+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 234 TTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSM 293

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A    + M    IR ++     L     +   Y  
Sbjct: 294 KGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLD 353

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   + +  K D   YT ++    +  D
Sbjct: 354 AEKVLREMLSAGLKPDTGTYTMIINEFCKKGD 385



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 144/319 (45%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  +E  F   F+    +++ M K     
Sbjct: 48  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKLKYFK 107

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  +++ +   G RP+   F  ++
Sbjct: 108 LVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLM 167

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 168 NGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLV 227

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 228 PNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDL 287

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L + C K    E+A    +  ++   ++D V YT++++ L  
Sbjct: 288 IDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGL-- 345

Query: 597 CQDEQ---NERHLMAILSA 612
           CQ+ +    E+ L  +LSA
Sbjct: 346 CQEGRYLDAEKVLREMLSA 364



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 139/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V++++ K    ++ +  ++++L+         +N+LM  F  +G    A  ++ 
Sbjct: 90  FDTCRKVLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFN 149

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        ++  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 150 AITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKES 209

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K+G++D A+ ++ +M      P+   + 
Sbjct: 210 KMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYN 269

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +++A +    M   
Sbjct: 270 TLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQE 329

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM + G   D     +++  + K G V   
Sbjct: 330 NIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTG 389

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 390 SKLLKEMQRDG 400


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 164/353 (46%), Gaps = 5/353 (1%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           FK++  + C  +  +YN ++  +       +AF    SM       +  T+ ++I  L +
Sbjct: 6   FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCR 65

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            GRL    ++  EM  + + P    + +LV+   K G    ++ ++ EM   G  P+   
Sbjct: 66  DGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVT 125

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y SLI S  KAG L+ A+  +D+M + G  PN   +T II   A+ G LD A  +  +M 
Sbjct: 126 YTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMT 185

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           R+GF+P+  TY+ L+  H   G+++ A+ L   M   G+ P + +Y+ +++  A+ + +D
Sbjct: 186 RSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELD 245

Query: 498 VAAKILLEMKTMGYSV---DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
            A ++ +EM  +G SV    V+ S ++    +   +  A    + M +  +  + F    
Sbjct: 246 RAFQMKVEM--IGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTT 303

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           L  +  K      A  L +  ++     D V Y  ++  L +    +  R L+
Sbjct: 304 LINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLL 356



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 144/319 (45%), Gaps = 3/319 (0%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG-ISLFSAYNRVIQYLAKA 248
           +S  + G E  ++ F+++      DG L    E++ + S+ G +     YN ++    K 
Sbjct: 42  RSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKE 101

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-KGECSLDGST 307
                +     +++ +    +  +Y  L+      G   +A E ++ M  +G C  +  T
Sbjct: 102 GNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCP-NERT 160

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  +I   A+ G LD A ++  EM    F PS   + +L++     GR++ ++ +  +M 
Sbjct: 161 YTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMV 220

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
           G G  P    Y ++I  +A+  +LD A ++  EM      P+   ++ +I+   +  +L 
Sbjct: 221 GKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLT 280

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A  +F +M      P   TY+ L+  +   G ++ A+ L++ M   G  P   TY  L+
Sbjct: 281 EACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLI 340

Query: 488 TLLAKRKLVDVAAKILLEM 506
             L K+     A ++LL++
Sbjct: 341 NGLNKQARSKEARRLLLKL 359



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 137/311 (44%), Gaps = 7/311 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
           +TS  L   +++   YVP +  Y  L +   +  +F   L L  EMV    +NG+S    
Sbjct: 71  ETSEVLVEMSRK--GYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMV----RNGLSPNVV 124

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  + KA  L  +   F ++       + ++Y  ++  F  +GL  +A+ +   M
Sbjct: 125 TYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEM 184

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +        TY  +I      GR++ AI L Q+M  +   P    +++++    +   L
Sbjct: 185 TRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQEL 244

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++ +EM G    P A  Y SLI+   +  +L  A  ++ EM      P+   +T +
Sbjct: 245 DRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTL 304

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++ K G L+ A+ +  +M + GFLP   TY+ L+       +   A +L   +     
Sbjct: 305 INAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDS 364

Query: 477 RPGLSTYTALL 487
            P   TY  L+
Sbjct: 365 IPSAVTYNTLI 375



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 1/272 (0%)

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
            ++ F+EM+     P+   + +++D   K  R D +      M   G  P+   +  +I 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
              + G+L     +  EM   G+ P+   +  ++  + K G    A+ +  +M R G  P
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP 121

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              TY+ L+     +G ++ AM+ ++ M   GL P   TYT ++   A++ L+D A ++L
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVL 181

Query: 504 LEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            EM   G+   +   + L+  +   G ++ A+  L+ M   G+  +      +     +N
Sbjct: 182 NEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARN 241

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
              + A  +    +  +   D V Y+S++  L
Sbjct: 242 QELDRAFQMKVEMIGKSVLPDAVTYSSLIQGL 273



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/298 (20%), Positives = 119/298 (39%), Gaps = 50/298 (16%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I   A+  +L+ ++    +++      D  +Y+ L+     +    +A ++++ M
Sbjct: 230 SYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEM 289

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
              +   D  TY  +I +  K G L+ A+ L  EM ++ F P    +  L++ + K  R 
Sbjct: 290 LTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARS 349

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIES---------------YAKAGKLDTALRLWDEM 401
             + ++ +++      PSA  Y +LIE+               +   G +D A ++++ M
Sbjct: 350 KEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESM 409

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY------------- 448
                +PN  ++ +II  H + G +  A  ++ +M    F+P   T              
Sbjct: 410 INKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMD 469

Query: 449 ------------SC----------LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
                       SC          L+E++   G +D    L   M   GL P   T T
Sbjct: 470 GELNEVIGDILRSCKLTDAELSKVLVEINQKEGNMDMVFNLLTEMAKDGLIPSTGTPT 527



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           + +  F +MER G LP   TY+ +++ +    + D A     SM   GL P L T+  ++
Sbjct: 1   MGLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMII 60

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
             L +   +   +++L+EM   GY  D V+ + ++  Y K+G+   AL     M  +G+ 
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS 120

Query: 547 TNNFIVRQLFESCMK 561
            N      L  S  K
Sbjct: 121 PNVVTYTSLINSMCK 135


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 166/362 (45%), Gaps = 1/362 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++    K +++EM++  + ++          ++N+++ +   +G   KA E    ME 
Sbjct: 218 NDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEG 277

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                +  +Y  +I   +  G ++ A ++   M+ +   P    + SL+  M K GRL+ 
Sbjct: 278 LGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEE 337

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  ++ +M   G  P+A  Y +LI+ Y   G L+ A    DEM   G  P+   + +++ 
Sbjct: 338 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 397

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +    G++  A  +  +M + G +P   TY+ L+  ++  G    A  L+N M S G+ P
Sbjct: 398 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEP 457

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWL 537
              TYT+L+ +L++R  +  A  +  ++   G S DV   + ++  +  +G+V+ A   L
Sbjct: 458 THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLL 517

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
           + M    +  +      L +   +    E A+ LL+       K D + Y ++++   R 
Sbjct: 518 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRR 577

Query: 598 QD 599
            D
Sbjct: 578 GD 579



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 152/322 (47%), Gaps = 1/322 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  + K  +LE +   F K+++     +  +YN L+  + NKG   +AF   + M
Sbjct: 321 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 380

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K       STY L++ +L   GR+  A  + +EM+++   P    +  L++   + G  
Sbjct: 381 VKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNA 440

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++ EM   G  P+   Y SLI   ++  ++  A  L++++   G  P+  +F  +
Sbjct: 441 KKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAM 500

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++ H  +G ++ A  +  +M+R    P   T++ L++     G+V+ A  L + M   G+
Sbjct: 501 VDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGI 560

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P   +Y  L++   +R  +  A ++  EM ++G++  +   + L+    K+   D A  
Sbjct: 561 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 620

Query: 536 WLRFMGSSGIRTNNFIVRQLFE 557
            L+ M + GI  ++     L E
Sbjct: 621 LLKEMVNKGISPDDSTYLSLIE 642



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 94/240 (39%), Gaps = 41/240 (17%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+   +P    Y +L +  +   +      L +EM+   SK        Y  +I  L++ 
Sbjct: 416 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML---SKGIEPTHVTYTSLIYVLSRR 472

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
           ++++ +   F+K+LD     D   +N ++      G   +AF + + M++     D  T+
Sbjct: 473 NRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTF 532

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++    + G+++ A  L  EMK R  +P    + +L+   G+ G +  + +V  EM  
Sbjct: 533 NTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLS 592

Query: 369 CGHRPS--------------------------------AP---MYVSLIESYAKAGKLDT 393
            G  P+                                +P    Y+SLIE     G +DT
Sbjct: 593 IGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM---GNVDT 649



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++Q   +  K+E +     ++     K D  SYN L++ +  +G    AF + + M
Sbjct: 531 TFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEM 590

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                +    TY  +I  L K+   D A +L +EM  +   P  + + SL++ MG    L
Sbjct: 591 LSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTL 650


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 163/363 (44%), Gaps = 35/363 (9%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           S+FR   R S  +P    Y  + D   +       L L+ EM+ D     +  F     +
Sbjct: 249 SMFR-TMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGI---L 304

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQS---------YNVLMTLFLNKGLPYKAFEI 292
           I  L K D++  +    +K L     ID  S         YN L+  +   G   +A  +
Sbjct: 305 IDGLCKTDEMVSA----RKFL-----IDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  +EK E   D  TY ++I  L    R++ A  L QEMK++ F P+   + +L+D   K
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G ++ +++V  +M   G  P+   + +LI+ Y KAGK++ A+ L+ EM I G  P+   
Sbjct: 416 EGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVA 475

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY---- 468
           +T +I+ H K G    A  +  +M+ AG  P   T SCL++     G++  A+KL+    
Sbjct: 476 YTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKT 535

Query: 469 ---------NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
                    N +  +   P    YTAL+  L     +  A+K   +M+  G   DV    
Sbjct: 536 GTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCI 595

Query: 520 VLM 522
           V++
Sbjct: 596 VII 598



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 173/389 (44%), Gaps = 6/389 (1%)

Query: 186 WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQY 244
           W   +   +P  +   M+ D L +   FD M  ++ +MV   +S N ++    Y  +I  
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVT----YGTLIDG 202

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
             +      ++  F ++++         Y +L+     +    +A  ++ +M       +
Sbjct: 203 CCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPN 262

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  M+    K   +  A++L+ EM      P+   F  L+D + K   + ++ K  +
Sbjct: 263 LYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLI 322

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           +M   G  P+  +Y  LI+ Y KAG L  AL L  E+      P+   ++++I+      
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           +++ A  +  +M++ GFLP   TY+ L++ +   G ++ A+++ + MT  G+ P + T++
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS 543
            L+    K   ++ A  +  EM   G   DV A   L+  + KDG+   A R  + M  +
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLL 572
           G+  N F +  L +   K+     A  L 
Sbjct: 503 GLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 1/322 (0%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           Q+ N+++   + KG     +++Y  M     S +  TY  +I    + G    A +LF E
Sbjct: 159 QACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDE 218

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M E+   P+  I+  L+  +    R+  +  ++  M+  G  P+   Y ++++ Y K   
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH 278

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +  AL L+ EM   G  PN   F ++I+   K+ ++  A     DM   G +P    Y+C
Sbjct: 279 VKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNC 338

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L++ +  +G +  A+ L++ +    + P + TY+ L+  L     ++ A  +L EMK  G
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 511 YSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
           +  +    + L+  Y K+G+++ A+     M   GI  N      L +   K    E+A 
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 570 PLLETYVESAAKVDLVLYTSVL 591
            L    V      D+V YT+++
Sbjct: 459 GLYTEMVIKGLLPDVVAYTALI 480



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 136/308 (44%), Gaps = 20/308 (6%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAKADKL 251
           VP    Y  L D   ++ +    LSL  E+     K+ I   +F+ Y+ +I+ L   D++
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEI----EKHEILPDVFT-YSILIKGLCGVDRM 384

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E +    +++       +  +YN L+  +  +G   KA E+   M +     +  T+  +
Sbjct: 385 EEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I    K+G+++AA+ L+ EM  +   P    + +L+D   K G    + +++ EMQ  G 
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLW-------------DEMRIAGFRPNFGLFTMIIE 418
            P+      LI+   K G++  A++L+             +E+  +   PN  ++T +I+
Sbjct: 505 HPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQ 564

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
                G++  A   F+DM  +G  P   T   +++ H  +  +   M L   +   G+ P
Sbjct: 565 GLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIP 624

Query: 479 GLSTYTAL 486
             S Y  L
Sbjct: 625 NSSVYRVL 632



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 17/255 (6%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    K   +E +     ++ +   + +  +++ L+  +   G    A  +Y  M
Sbjct: 405 TYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEM 464

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D   Y  +I    K G    A +L +EM+E    P+    + L+D + K GR+
Sbjct: 465 VIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRI 524

Query: 357 DTSMKVYMEMQGC---GHR----------PSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
             ++K+++   G    G +          P+  MY +LI+     G++  A + + +MR 
Sbjct: 525 SDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRC 584

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
           +G RP+     +II+ H ++  L   M +  D+ + G +P  S Y  L + +  SG + S
Sbjct: 585 SGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKS 644

Query: 464 AMKLYNSMTSAGLRP 478
           A+    S    G++P
Sbjct: 645 AL----SFCGEGVQP 655



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 25/222 (11%)

Query: 306 STYELM--IPSLAKSG--RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           S +E++  +P + + G  R + A++LF++M+  + +P        + +    G LD    
Sbjct: 711 SPHEILKKVPFIGQKGDQRPNKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEW 770

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           ++  ++  G      +  SLI  Y+K G++ TA RL+D  +    + +   +T +I  HA
Sbjct: 771 IHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRLFDGTQ----KKDVTTWTSMIVGHA 826

Query: 422 KSGKLDIAMSIFTDM----------------ERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             G+ + A+ +FT+M                E +  LP   T+  +L   + +G V+   
Sbjct: 827 LHGQAEEALQLFTEMKETNKRARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGK 886

Query: 466 KLYNSMTSA-GLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           + + SM     LRP +S +  ++ LL +  L+  A + +L+M
Sbjct: 887 QHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILKM 928


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 182/426 (42%), Gaps = 6/426 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + LF+EMV    +  +    +YN VI  L K     M+   F+K+  +  K +  +YN +
Sbjct: 186 VGLFNEMVWSGHEPNVI---SYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTI 242

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +       L  +A E    M       D  TY  ++      G+L+ A +LF+EM  RN 
Sbjct: 243 IDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNV 302

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    F  LVD + K G +  +  V   M   G  P+A  Y +L++ Y    ++D A++
Sbjct: 303 MPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIK 362

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +   M   G  PN   + ++I  + KS +++ A  + ++M      P   TYS L++   
Sbjct: 363 VLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLC 422

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G+   A+ L+  M S+GL P L  Y+ LL    K   +D A K+L EM       ++ 
Sbjct: 423 QVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNII 482

Query: 517 ASDVLM--VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
              +L+  ++I  G ++ A      + + GIR + +    + +  +K  L + A      
Sbjct: 483 LYTILIRGMFIA-GKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRK 541

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQP 634
             +     D   Y  ++   ++ QD      L+  +   +  A +    +    E   + 
Sbjct: 542 MEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLESHDEI 601

Query: 635 VLSFVR 640
           +  F+R
Sbjct: 602 ISRFMR 607



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 127/289 (43%), Gaps = 1/289 (0%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  T+  +I  L   G++  A+ LF EM      P+   + ++++ + K G    +++V+
Sbjct: 165 DAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVF 224

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +M+    +P+   Y ++I+S  K   ++ A+    EM   G  P+   +  I+      
Sbjct: 225 RKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSL 284

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G+L+ A  +F +M     +P   T++ L++     G V  A  +  +MT  G  P   TY
Sbjct: 285 GQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTY 344

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
            AL+        +D A K+L  M   G + ++S+ ++L+  Y K   ++ A R L  M  
Sbjct: 345 NALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSE 404

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             +  +      L +   +      A  L +    S    DL+ Y+ +L
Sbjct: 405 KNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILL 453


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 163/361 (45%), Gaps = 4/361 (1%)

Query: 220 FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           FDEM+   SK     +  Y  +IQ   +  K+      F +++    K D  +Y  L+ +
Sbjct: 386 FDEML---SKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           +   G    AF ++  M +   + +  TY  +I  L K G LD A +L  EM+++  + +
Sbjct: 443 YCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN 502

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
             I+ S+V+ + KAG ++ ++K+  EM+  G  P A  Y ++I++Y + G +D A +L  
Sbjct: 503 VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           EM   G +P    F +++      G L+    +   M   G +P   TY+ L++ H    
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRN 622

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
            +++  K+Y  M + G+ P  +TY  L+    K + +  A  +  EM   GY   V++ +
Sbjct: 623 SMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYN 682

Query: 520 VLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
            L+  + K   +  A      M   G+  +  I     + C +    E    L +  +E 
Sbjct: 683 ALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEK 742

Query: 579 A 579
            
Sbjct: 743 C 743



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/461 (23%), Positives = 191/461 (41%), Gaps = 55/461 (11%)

Query: 147 WGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDV 206
           WGP         Q + ++ H+++A K++ D   S  L          V  D C   L  +
Sbjct: 186 WGPNPIAFDIFFQVLVEIGHLSEARKLL-DKLLSYGLV---------VTVDSCNAFLSRI 235

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSY---------- 255
            N S   +  + +F E        GIS   ++YN +I  L +  K++ ++          
Sbjct: 236 ANNSEGIEMAIKVFCEY-------GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRS 288

Query: 256 -----CCFKKVLDSDCKI-----------DTQ---------SYNVLMTLFLNKGLPYKAF 290
                  +  V+D  C +           D Q         +YN ++ L    G  ++A 
Sbjct: 289 STPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAE 348

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           ++   M   +   D   Y  +I    K G +  A K F EM  +   P +  + +L+   
Sbjct: 349 KVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF 408

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
           G+ G++     ++ EM   G +P    Y +LI+ Y KAG++  A  L +EM   G  PN 
Sbjct: 409 GQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNI 468

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +  +I+   K G+LD A  +  +M + G       Y+ ++     +G ++ A+KL   
Sbjct: 469 VTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKE 528

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGS 529
           M  AG+ P   TYT ++    +   +D A K+L EM   G    V   +VLM  +   G 
Sbjct: 529 MEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGM 588

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLF-ESCMKNALYESAK 569
           ++   R L +M   GI  +      L  + C++N++  + K
Sbjct: 589 LEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTK 629


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 142/294 (48%), Gaps = 3/294 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + L +EMV  +    +     YN ++  L K  K++ +      +L +  K D  +Y+ L
Sbjct: 254 IGLLNEMVLKTINPNVY---TYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL 310

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +       KA  ++ +M     + D  TY ++I    K+  +D A+ LF+EM ++N 
Sbjct: 311 MDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    ++SL+D + K+GR+     +  EM+  G       Y SLI+   K G LD A+ 
Sbjct: 371 VPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIA 430

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+++M+    RPN   FT++++   K G+L  A  +F D+   G+     TY+ ++  H 
Sbjct: 431 LFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHC 490

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             G ++ A+ + + M   G  P   T+  ++  L K+   D A K+L +M   G
Sbjct: 491 KQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 175/404 (43%), Gaps = 16/404 (3%)

Query: 213 FDGMLSLFDEMVHDSSKNGISL----------FSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           F+ +L  F +M H S+   +S               N +I       ++   +    K+L
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
                 DT + N L+     KG   KA   ++ +      L+  +Y  +I  + K G   
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 181

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            AIKL +++  R  +P+  ++++++D++ K   +  +  ++ EM   G       Y +LI
Sbjct: 182 GAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 241

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
             +   GKL  A+ L +EM +    PN   + +++++  K GK+  A S+   M +A   
Sbjct: 242 YGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVK 301

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   TYS L++ +    +V  A  ++N+M+  G+ P + TYT L+    K K+VD A  +
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNL 361

Query: 503 LLEM--KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
             EM  K M   + V+ S ++    K G + +    +  M   G   +      L +   
Sbjct: 362 FKEMHQKNMVPGI-VTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLC 420

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV---RCQDEQ 601
           KN   + A  L     +   + ++  +T +L  L    R +D Q
Sbjct: 421 KNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQ 464



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 165/378 (43%), Gaps = 4/378 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L + + +  D  G + L  ++    +K  + ++S    +I  L K   +  +Y  F 
Sbjct: 167 YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYST---IIDALCKYQLVSEAYGLFS 223

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++       D  +Y+ L+  F  +G   +A  +   M     + +  TY +++ +L K G
Sbjct: 224 EMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           ++  A  +   M +   +P    +++L+D       +  +  V+  M   G  P    Y 
Sbjct: 284 KVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYT 343

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            LI  + K   +D AL L+ EM      P    ++ +I+   KSG++     +  +M   
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDR 403

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G      TYS L++    +G +D A+ L+N M    +RP + T+T LL  L K   +  A
Sbjct: 404 GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDA 463

Query: 500 AKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            ++  ++ T GY ++V   +V++  + K G ++ AL  L  M  +G   N F    +  +
Sbjct: 464 QEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIA 523

Query: 559 CMKNALYESAKPLLETYV 576
             K    + A+ LL   +
Sbjct: 524 LFKKDENDKAEKLLRQMI 541



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 100/208 (48%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y +L+  F    +  +A  +++ M +        TY  +I  L KSGR+     L 
Sbjct: 338 DVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLI 397

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM++R        ++SL+D + K G LD ++ ++ +M+    RP+   +  L++   K 
Sbjct: 398 DEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKG 457

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+L  A  ++ ++   G+  N   + ++I  H K G L+ A+++ + ME  G +P   T+
Sbjct: 458 GRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTF 517

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGL 476
             ++       + D A KL   M + GL
Sbjct: 518 ETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 8/245 (3%)

Query: 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFS------AYNRVIQYLAKADKLEMSYCCF 258
           DV+  S   DG   +++        N +SL         Y  +I    K   ++ +   F
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKG-LPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           K++   +      +Y+ L+      G +PY    I E  ++G+ + D  TY  +I  L K
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPA-DVITYSSLIDGLCK 421

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           +G LD AI LF +MK++  RP+   F  L+D + K GRL  + +V+ ++   G+  +   
Sbjct: 422 NGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYT 481

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  +I  + K G L+ AL +  +M   G  PN   F  II +  K  + D A  +   M 
Sbjct: 482 YNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMI 541

Query: 438 RAGFL 442
             G L
Sbjct: 542 ARGLL 546



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/292 (18%), Positives = 117/292 (40%), Gaps = 36/292 (12%)

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D ++  +  M    H P    +  +++S+AK     TA+ L   + + G +P+     +
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I      G++    S+   + + G+ P   T + L++     GQV  A+  ++ + + G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 476 L-----------------------------------RPGLSTYTALLTLLAKRKLVDVAA 500
                                               +P +  Y+ ++  L K +LV  A 
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAY 219

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +  EM   G S D V+ S ++  +  +G +  A+  L  M    I  N +    L ++ 
Sbjct: 220 GLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
            K    + AK +L   +++  K D++ Y++++       + +  +H+   +S
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMS 331


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 165/355 (46%), Gaps = 12/355 (3%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYES-MEKGECSLDGSTYELMIPSLAKSGRLDAA 324
           C I+  +YN LM LF+  G    A  ++E  ++ G  S D  ++ ++I  + K G +  A
Sbjct: 194 CSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKA 253

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG-HRPSAPMYVSLIE 383
           ++L + M E    P       LV+ + +A  +    +V   +Q  G   P+   Y S+I 
Sbjct: 254 LELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVIS 313

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            Y KAG+++ A+ ++++M   G  PN   + ++I  + K+G +  A++++  M     LP
Sbjct: 314 GYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLP 373

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              T+S L++ +   GQ+D AMK++  M    ++P   T+  ++    K+   + + + L
Sbjct: 374 DVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQ---NRSGEAL 430

Query: 504 LEMKTMGYSVDVSA-----SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL-FE 557
             +K M    D++      + V+ V  K G VD A   L  M   G R + +    L   
Sbjct: 431 HFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIG 490

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
            CMK  + E+        VE+    D ++  S ++ L++        H+M I + 
Sbjct: 491 HCMKGRIAEAVT-FFHKMVETGCSPDSIVVNSFISCLLKSGMPGEVDHIMRIAAG 544


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 146/303 (48%), Gaps = 3/303 (0%)

Query: 220 FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           FDEM+   SK     +  Y  +IQ   +  K+      F +++    K D  +Y  L+ +
Sbjct: 386 FDEML---SKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           +   G    AF ++  M +   + +  TY  +I  L K G LD A +L  EM+++  + +
Sbjct: 443 YCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN 502

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
             I+ S+V+ + KAG ++ ++K+  EM+  G  P A  Y ++I++Y + G +D A +L  
Sbjct: 503 VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           EM   G +P    F +++      G L+    +   M   G +P   TY+ L++ H    
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRN 622

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
            +++  K+Y  M + G+ P  +TY  L+    K + +  A  +  EM   GY   V++ +
Sbjct: 623 SMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYN 682

Query: 520 VLM 522
            L+
Sbjct: 683 ALI 685



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/461 (23%), Positives = 191/461 (41%), Gaps = 55/461 (11%)

Query: 147 WGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDV 206
           WGP         Q + ++ H+++A K++ D   S  L          V  D C   L  +
Sbjct: 186 WGPNPIAFDIFFQVLVEIGHLSEARKLL-DKLLSYGLV---------VTVDSCNAFLSRI 235

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSY---------- 255
            N S   +  + +F E        GIS   ++YN +I  L +  K++ ++          
Sbjct: 236 ANNSEGIEMAIKVFCEY-------GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRS 288

Query: 256 -----CCFKKVLDSDCKI-----------DTQ---------SYNVLMTLFLNKGLPYKAF 290
                  +  V+D  C +           D Q         +YN ++ L    G  ++A 
Sbjct: 289 STPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAE 348

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           ++   M   +   D   Y  +I    K G +  A K F EM  +   P +  + +L+   
Sbjct: 349 KVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF 408

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
           G+ G++     ++ EM   G +P    Y +LI+ Y KAG++  A  L +EM   G  PN 
Sbjct: 409 GQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNI 468

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +  +I+   K G+LD A  +  +M + G       Y+ ++     +G ++ A+KL   
Sbjct: 469 VTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKE 528

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGS 529
           M  AG+ P   TYT ++    +   +D A K+L EM   G    V   +VLM  +   G 
Sbjct: 529 MEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGM 588

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLF-ESCMKNALYESAK 569
           ++   R L +M   GI  +      L  + C++N++  + K
Sbjct: 589 LEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTK 629



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 129/286 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    K   +  +   F ++L      D  +Y  L+  F   G   +   ++  M
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I    K+G +  A  L  EM +    P+   + +L+D + K G L
Sbjct: 425 ISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGEL 484

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           DT+ ++  EM+  G + +  +Y S++    KAG ++ A++L  EM +AG  P+   +T +
Sbjct: 485 DTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTV 544

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+++ + G +D A  +  +M   G  PT  T++ L+      G ++   +L   M   G+
Sbjct: 545 IDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGI 604

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            P   TY  L+     R  ++   KI   M+  G + D +  ++L+
Sbjct: 605 VPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILI 650


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 157/356 (44%), Gaps = 2/356 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AYN V+  L+ A  L  +   F  +L      +  +YN+L+     +G   +A  I   M
Sbjct: 158 AYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDM 216

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  TY  ++ +  ++G +D A +L   M+E   +P+   F S+V+ M KAG++
Sbjct: 217 RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKM 276

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + KV+ EM   G  P    Y +L+  Y KAG    AL ++ EM   G  P+   FT +
Sbjct: 277 EDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSL 336

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+G L+ A+++   M   G      T++ L++     G +D A+     M    +
Sbjct: 337 IHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRI 396

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +P +  Y AL+        +D A ++L EM+  G   D V+ S ++  Y K+     A  
Sbjct: 397 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 456

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             + M   G+  +      L            A  L +  ++   + D   YTS++
Sbjct: 457 LNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLI 512



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 154/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +LS+ R   R +   P    Y  L      + + DG   L   M     K  +  F   N
Sbjct: 209 ALSILR-DMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTF---N 264

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++  + KA K+E +   F +++      D  SYN L+  +   G  ++A  ++  M + 
Sbjct: 265 SMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQK 324

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  T+  +I  + K+G L+ A+ L ++M+ER  + +   F +L+D   K G LD +
Sbjct: 325 GIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA 384

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           +     M+ C  +PS   Y +LI  Y   G++D A  L  EM   G +P+   ++ II +
Sbjct: 385 LLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 444

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K+     A  +   M   G LP   TYS L+ +     ++  A  L+ +M   GL+P 
Sbjct: 445 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPD 504

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT+L+    K   V+ A  +  +M   G   DV    VL+
Sbjct: 505 EFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLI 547



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 23/364 (6%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LS+F EM        +  F++   +I  + KA  LE +    +++ +   +++  ++  L
Sbjct: 315 LSVFAEMTQKGIMPDVVTFTS---LIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTAL 371

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  F  KG    A      M++         Y  +I      GR+D A +L  EM+ +  
Sbjct: 372 IDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGL 431

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P    +++++ +  K     ++ ++  +M   G  P A  Y SLI       +L  A  
Sbjct: 432 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHV 491

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+  M   G +P+   +T +I+ H K G ++ A+S+   M +AG LP   TYS L+   +
Sbjct: 492 LFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLS 551

Query: 457 SSGQVDSAMKL---------------YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            S +   A +L               Y+++     +  L +  ALL     + L++ A K
Sbjct: 552 KSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADK 611

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF----IVRQLF 556
           +   M    +++D S   VL+  + + G+V  AL + + M   G   N+     ++R LF
Sbjct: 612 VYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLF 671

Query: 557 ESCM 560
           E+ M
Sbjct: 672 ENGM 675



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 15/256 (5%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I+ L    +L  ++  FK ++    + D  +Y  L+     +G    A  +++ M 
Sbjct: 473 YSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMV 532

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA---- 353
           K     D  TY ++I  L+KS R   A +L  ++   +  P+   + +L+    KA    
Sbjct: 533 KAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKS 592

Query: 354 -----------GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
                      G ++ + KVY  M          +Y  LI  + +AG +  AL    +M 
Sbjct: 593 VLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQML 652

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             GF PN      +I    ++G +  A  +   +     L        L++++ + G VD
Sbjct: 653 QGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVD 712

Query: 463 SAMKLYNSMTSAGLRP 478
           + + + + M   GL P
Sbjct: 713 AVLDVLHGMAKDGLLP 728



 Score = 48.1 bits (113), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 20/231 (8%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAK-ADKLE 252
           P +  Y  L D   +  + +  LSL D+MV    K G+      Y+ +I  L+K A  +E
Sbjct: 503 PDEFTYTSLIDGHCKEGNVESALSLHDKMV----KAGVLPDVVTYSVLINGLSKSARAME 558

Query: 253 MSYCCFK-------------KVLDSDC-KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
                FK               L   C K + +S   L+  F  KGL  +A ++Y+SM  
Sbjct: 559 AQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLD 618

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              +LDGS Y ++I    ++G +  A+   ++M +  F P+     SL+  + + G +  
Sbjct: 619 RNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVE 678

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + +V  ++        A    +LI+     G +D  L +   M   G  P+
Sbjct: 679 ADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPS 729


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 174/387 (44%), Gaps = 7/387 (1%)

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           ML LF  M   +        + YN +I+ L +   L  +      ++ S  + D  ++N 
Sbjct: 112 MLRLFAHMYRHAPPAPTG--ATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNS 169

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+  +        A +++  M     S D  +Y  +I    ++GR+D A++LF+EM +  
Sbjct: 170 LILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ-- 227

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P     A+LV  +  AGR +  + +  +M+  G RP+   Y +L++ + +  K + A 
Sbjct: 228 --PDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAE 285

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           ++ +EM  +G  P     T+++ ++ + G++  A+ +F  M   G  P   TY+ +++  
Sbjct: 286 KILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGF 345

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
            ++G+V  AM L + M   G+ P + TY  L+        +  A ++L  M+  G + D 
Sbjct: 346 CNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQ 405

Query: 516 SASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
              +VL+    K G VD A      +   GIR N+     +     K   ++ A   LE 
Sbjct: 406 YTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLEN 465

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQDEQ 601
            + +    D   Y+  + +L + +  Q
Sbjct: 466 MISAGYAPDTYTYSPFIENLCKTKGSQ 492



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 159/358 (44%), Gaps = 5/358 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N +I    +  +LE+++  F K+       D  SY  L+  F   G   +A E++  M 
Sbjct: 167 FNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMT 226

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D  T+  ++  L  +GR +  + + Q+MKE  +RP+   +A+LVD   +  + +
Sbjct: 227 QP----DMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAE 282

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + K+  EM   G  P       ++ +Y + G++  A+R+++ MR  G  PN   +  I+
Sbjct: 283 EAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIV 342

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +    +GK+  AM++   M   G  P   TY+ L+      G + SA +L   M   GL 
Sbjct: 343 QGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLA 402

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
               TY  L+  L K   VD A  +   ++  G   + V+ + V+    K G  D A  +
Sbjct: 403 ADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTF 462

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           L  M S+G   + +      E+  K    +     ++  ++   K   V YT V+  L
Sbjct: 463 LENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRL 520



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 130/298 (43%), Gaps = 1/298 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AY  ++    +  K E +     ++ DS       +  +++  +  +G    A  ++ESM
Sbjct: 267 AYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESM 326

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  TY  ++     +G++  A+ L  +M+E    P    +  L+      G +
Sbjct: 327 RFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHI 386

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            ++ ++   M+G G       Y  LI++  K GK+D A  L+D +   G RPN   F  +
Sbjct: 387 GSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTV 446

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+GK D+A +   +M  AG+ P   TYS  +E    +      +   + M    +
Sbjct: 447 INGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDV 506

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHA 533
           +P    YT ++  L   +   +A +I  +M + G S D V+ +  +  Y  +G +D A
Sbjct: 507 KPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEA 564



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 155/375 (41%), Gaps = 5/375 (1%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
            +  L + +  K   W  P    Y  L D+    +  +    + +EM        +   +
Sbjct: 246 GEEGLCMLQKMKELGWR-PTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCT 304

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
               V+    +  ++  +   F+ +    C+ +  +YN ++  F N G  YKA  + + M
Sbjct: 305 I---VVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQM 361

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D  TY L+I      G + +A +L + M+          +  L+D++ K G++
Sbjct: 362 RECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKV 421

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  ++  ++  G RP++  + ++I    KAGK D A    + M  AG+ P+   ++  
Sbjct: 422 DEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPF 481

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           IE+  K+      +    +M +    P+   Y+ ++    +      A +++  M S G 
Sbjct: 482 IENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGC 541

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P + TYT  +        +D A  ++ EMK     VD  A + L+  +   G  D A+ 
Sbjct: 542 SPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVT 601

Query: 536 WLRFMGSSGIRTNNF 550
            L+ M       N+F
Sbjct: 602 ILKHMTGVASMPNHF 616



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 119/289 (41%), Gaps = 40/289 (13%)

Query: 336 FRPSFN-IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM---YVSLIESYAKAGKL 391
            RP F+  F SL+    +       ++++  M    H P AP    Y +LI +  +   L
Sbjct: 88  LRPFFDRPFRSLLTHFSRYALTPLMLRLFAHMYR--HAPPAPTGATYNALIRALCRRADL 145

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A R    M  +G+RP+   F  +I  + ++ +L++A  +F  M   GF     +Y+ L
Sbjct: 146 RHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAAL 205

Query: 452 LEMHASSGQVDSAMKLYNSMTSA-------------------------------GLRPGL 480
           +E    +G++D A++L+  MT                                 G RP  
Sbjct: 206 IEGFCEAGRIDEALELFREMTQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTT 265

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGY-SVDVSASDVLMVYIKDGSVDHALRWLRF 539
             Y AL+ L  + +  + A KIL EM   G     V+ + V+  Y ++G +  A+R    
Sbjct: 266 RAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFES 325

Query: 540 MGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLY 587
           M   G   N +    + +  C    +Y+ A  LL+   E   + D+V Y
Sbjct: 326 MRFKGCEPNVWTYNAIVQGFCNAGKVYK-AMALLDQMRECGVEPDVVTY 373



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/254 (19%), Positives = 106/254 (41%), Gaps = 1/254 (0%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMS 254
           G E  V+ +++L   +  DG +     ++     NG++     YN +I  L K  K++ +
Sbjct: 365 GVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEA 424

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F  +     + ++ ++N ++      G    A    E+M     + D  TY   I +
Sbjct: 425 CSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIEN 484

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+      +    EM +++ +PS   +  +++ +        + +++ +M   G  P 
Sbjct: 485 LCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPD 544

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y + + +Y   G+LD A  +  EM+      +   +  +I+ H   G+ D A++I  
Sbjct: 545 VVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILK 604

Query: 435 DMERAGFLPTPSTY 448
            M     +P   T+
Sbjct: 605 HMTGVASMPNHFTF 618



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 139/386 (36%), Gaps = 59/386 (15%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L D L ++   D   SLFD + +   + N ++    +N VI  L KA K +++ C F
Sbjct: 408 YNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVT----FNTVINGLCKAGKFDVA-CTF 462

Query: 259 ------------------------------------KKVLDSDCKIDTQSYNVLMTLFLN 282
                                                ++L  D K  T +Y +++    N
Sbjct: 463 LENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFN 522

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           +     A  I+  M    CS D  TY   + +    GRLD A  +  EMK+         
Sbjct: 523 ERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMA 582

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS---------------APMYVSL-IESYA 386
           + +L+D     G+ D ++ +   M G    P+                  +V L   S  
Sbjct: 583 YNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVW 642

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K  +L     L++ M+      +   +  I+E  ++  +LD   S+ + M+         
Sbjct: 643 KTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNED 702

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            Y+ L+           A  L  SM   G  P L  Y  LL+ L      D A +I    
Sbjct: 703 IYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSS 762

Query: 507 KTMGYSVDVSASDVLM-VYIKDGSVD 531
           +   Y+ D     V++  +I+ G  D
Sbjct: 763 RWKEYNTDEIVWKVIIDGFIRKGHAD 788



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 72/164 (43%)

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
           FE++E M+K        TY  ++   ++  RLD    L   MKE N   + +I+ +LV+ 
Sbjct: 651 FELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNC 710

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
             K      +  +   M G G  P+   Y  L+      G+ D A  ++   R   +  +
Sbjct: 711 FCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTD 770

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
             ++ +II+   + G  D+   + + +E+    P+  TY+ L E
Sbjct: 771 EIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYAMLTE 814


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 188/394 (47%), Gaps = 10/394 (2%)

Query: 217 LSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           +SLF +M       GI   LF+  N +I       ++  S+    K+L    + +T + N
Sbjct: 30  ISLFKQM----QVKGIEPDLFT-LNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLN 84

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            LM     KG   K+   ++ +      +D  +Y  ++  L K G   +A+KL + +++R
Sbjct: 85  TLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDR 144

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
           + RP+  ++ +++D + K   ++ +  +Y EM   G  P+   Y +LI  +  AG+L  A
Sbjct: 145 STRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEA 204

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             L +EM +    PN   +T+++++  K GK+  A ++   M + G  P   +Y+ L++ 
Sbjct: 205 FGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDG 264

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM--KTMGYS 512
           +   G+V +A +++++M   G+ P + +Y  ++  L K K VD A  +L E+  K M  +
Sbjct: 265 YCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPN 324

Query: 513 VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
             V+ S ++  + K G +  AL  L+ M   G   +      L ++  KN   + A  L 
Sbjct: 325 T-VTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALF 383

Query: 573 ETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
               E   + +   YT+++  L +    +N + L
Sbjct: 384 MKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKL 417



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 127/270 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++  L K  K++ +      +     K +  SYN LM  +   G    A +++ +M
Sbjct: 222 TYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTM 281

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   + +  +Y +MI  L KS R+D A+ L +E+  +N  P+   ++SL+D   K GR+
Sbjct: 282 VQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRI 341

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            +++ +  EM   G       Y SL+++  K   LD A  L+ +M+  G +PN   +T +
Sbjct: 342 TSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTAL 401

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K G+   A  +F  +   G      TY+ ++      G +D A+ + + M   G 
Sbjct: 402 IDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGC 461

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            P   T+  ++  L ++   D A K+L EM
Sbjct: 462 IPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 176/389 (45%), Gaps = 11/389 (2%)

Query: 154 QLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213
           Q+D++ +      +   L  I ++ ++L L R  + +S   P    Y  + D L + +  
Sbjct: 112 QMDQVSYAT----LLNGLCKIGETRSALKLLRMIEDRSTR-PNVVMYNTIIDGLCKDKLV 166

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           +    L+ EM    ++        Y+ +I     A +L  ++    +++  +   +  +Y
Sbjct: 167 NEAYDLYSEM---DARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTY 223

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
            +LM     +G   +A  +   M K     +  +Y  ++      G +  A ++F  M +
Sbjct: 224 TILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQ 283

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           +   P+   +  ++D + K+ R+D +M +  E+      P+   Y SLI+ + K G++ +
Sbjct: 284 KGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITS 343

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           AL L  EM   G   +   +T ++++  K+  LD A ++F  M+  G  P   TY+ L++
Sbjct: 344 ALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALID 403

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G+  +A KL+  +   G R  + TY  +++ L K  ++D A  +  +M+  G   
Sbjct: 404 GLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIP 463

Query: 514 DVSASDVLM--VYIKDGSVDHALRWLRFM 540
           D    ++++  ++ KD + D A + L  M
Sbjct: 464 DAVTFEIIIRSLFEKDQN-DKAEKLLHEM 491



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/464 (21%), Positives = 190/464 (40%), Gaps = 13/464 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N+++  L K      +   FK++     + D  + N+L+  F + G    +F +   + 
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKIL 72

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K     +  T   ++  L   G +  ++    ++  + F+     +A+L++ + K G   
Sbjct: 73  KLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETR 132

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           +++K+   ++    RP+  MY ++I+   K   ++ A  L+ EM   G  PN   ++ +I
Sbjct: 133 SALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLI 192

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                +G+L  A  +  +M      P   TY+ L++     G+V  A  L   MT  G++
Sbjct: 193 YGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVK 252

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P + +Y  L+        V  A ++   M   G + +V + ++++  + K   VD A+  
Sbjct: 253 PNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNL 312

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           LR +    +  N      L +   K     SA  LL+         D+V YTS+L  L +
Sbjct: 313 LREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCK 372

Query: 597 CQDEQNERHLMAIL-----SATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELE 651
            Q+      L   +        K+   A + GL  G   +    L F      G    + 
Sbjct: 373 NQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKL-FQHLLVKGCRINV- 430

Query: 652 EGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFD 695
                +  NV+++ L   G ++ A  +     EN   P A+ F+
Sbjct: 431 -----WTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFE 469



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 122/282 (43%), Gaps = 3/282 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L D L +        +L   M  +  K  +    +YN ++       +++ +
Sbjct: 218 PNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVV---SYNTLMDGYCLIGEVQNA 274

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F  ++      +  SYN+++          +A  +   +       +  TY  +I  
Sbjct: 275 KQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDG 334

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K GR+ +A+ L +EM  R        + SL+D++ K   LD +  ++M+M+  G +P+
Sbjct: 335 FCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPN 394

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +LI+   K G+   A +L+  + + G R N   + ++I    K G LD A+++ +
Sbjct: 395 KYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKS 454

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
            ME  G +P   T+  ++       Q D A KL + M +  L
Sbjct: 455 KMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDL 496



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 111/270 (41%), Gaps = 1/270 (0%)

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P    F  +V S+ K     T++ ++ +MQ  G  P       LI  +   G++  +  +
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
             ++   G++PN      +++     G++  ++     +   GF     +Y+ LL     
Sbjct: 68  LGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCK 127

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-S 516
            G+  SA+KL   +     RP +  Y  ++  L K KLV+ A  +  EM   G   +V +
Sbjct: 128 IGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVIT 187

Query: 517 ASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            S ++  +   G +  A   L  M    I  N +    L ++  K    + AK LL    
Sbjct: 188 YSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMT 247

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
           +   K ++V Y +++       + QN + +
Sbjct: 248 KEGVKPNVVSYNTLMDGYCLIGEVQNAKQM 277


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 150/333 (45%), Gaps = 3/333 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y  L+      G+  +A  ++  M    C+ D   Y +M+  L  +GR   A+ L  + 
Sbjct: 146 TYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDA 205

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             + F P+  ++ +L+D     G L+ ++ ++  MQ  G  P+   Y  LI  + K+GK+
Sbjct: 206 MGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKV 265

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A+ L+  M  AG  PN   +T +I+     G L+ A  +   ME  G  P   T   L
Sbjct: 266 ERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVL 325

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++     G+++ A +   S+   G++     YT+++  L K    D A  ++ ++ T G+
Sbjct: 326 IDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGF 385

Query: 512 SVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D    S ++    ++  +  A+  L  M  SG++ N      L +  ++    +S K 
Sbjct: 386 VPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKM 445

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
           + +    +  K D+V YT  +     CQD + E
Sbjct: 446 ISDRMAAAGVKPDVVTYTVFIRSY--CQDGRME 476



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 175/384 (45%), Gaps = 6/384 (1%)

Query: 215 GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           GMLS   +M   +++  +     Y  +I     A  L  +      +L +    D+ +Y 
Sbjct: 57  GMLS---DMESLAARMPVRNLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYT 113

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
             +  +   GL   A  ++  M +  C+    TY  ++  L  +G +  A+ +F  M   
Sbjct: 114 SFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPD 173

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
              P  ++++ +V  +  AGR   ++ +  +  G G  P+  +Y +LI+ Y   G L+ A
Sbjct: 174 GCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELA 233

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           + ++  M+  G  PN   +T +I    KSGK++ AM +++ M  AG  P   TY+ L++ 
Sbjct: 234 IDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQG 293

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
             S G ++ A +L +SM + GL P   T   L+  L K   ++ A + L  +   G  V+
Sbjct: 294 QCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVN 353

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLL 572
            V  + ++    K G  D A   ++ + + G   +  +   L +  C +N L E A  LL
Sbjct: 354 QVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLE-AISLL 412

Query: 573 ETYVESAAKVDLVLYTSVLAHLVR 596
              +ES  + + V +T ++   +R
Sbjct: 413 NDMIESGVQANAVPFTILIDKHLR 436



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 154/330 (46%), Gaps = 3/330 (0%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           +VP    Y  L D    + D +  + +F  M    SK  +     Y ++I    K+ K+E
Sbjct: 210 FVPNVAVYNALIDGYCSTGDLELAIDIFKGM---QSKGCLPNVRTYTQLICGFCKSGKVE 266

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   + +++++    +  +Y  L+    ++G    AF +  SME    + +  T  ++I
Sbjct: 267 RAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLI 326

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            +L K GR++ A +    + ++  + +  I+ S++D++ K+G+ D +  +  ++   G  
Sbjct: 327 DALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFV 386

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P A MY SLI+   +  KL  A+ L ++M  +G + N   FT++I+ H +  + D    I
Sbjct: 387 PDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMI 446

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M  AG  P   TY+  +  +   G+++ A  +   M   G+RP L+TY  L+   A 
Sbjct: 447 SDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYAN 506

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             LV  A   L  M   G   +  +  VL+
Sbjct: 507 LGLVSQAFSSLKNMIDNGCKPNDESYTVLL 536



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 146/325 (44%), Gaps = 1/325 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN L+  + + G    A +I++ M+   C  +  TY  +I    KSG+++ A+ L+  M 
Sbjct: 217 YNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMI 276

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           E    P+   + +L+      G L+ + ++   M+ CG  P+    + LI++  K G+++
Sbjct: 277 EAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIE 336

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A +    +   G + N  ++T +I++  KSGK D A ++   +   GF+P    YS L+
Sbjct: 337 EAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLI 396

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           +      ++  A+ L N M  +G++     +T L+    +    D    I   M   G  
Sbjct: 397 DGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVK 456

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            DV    V +  Y +DG ++ A   +  M   G+R N      L +      L   A   
Sbjct: 457 PDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSS 516

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
           L+  +++  K +   YT +L  L++
Sbjct: 517 LKNMIDNGCKPNDESYTVLLGLLLK 541



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 116/289 (40%), Gaps = 24/289 (8%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFK 259
           V+ + V   S   DG +   + M+     +G+    + YN +I+  A    +  ++   K
Sbjct: 459 VVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLK 518

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++D+ CK + +SY VL+ L L K                      S ++L+  S++   
Sbjct: 519 NMIDNGCKPNDESYTVLLGLLLKKN---------------------SYHDLVADSISLWK 557

Query: 320 RLDAAI--KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            +D  +  +L +E+ +     +  ++   +  + K  RL+ +    + MQ     PS  +
Sbjct: 558 IVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDV 617

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  +IE   +   L  ALR  D M    + P    +  II +  + G    A SIF D+ 
Sbjct: 618 YTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDIL 677

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
              +      +  L++     G      +L + M     RPG + Y+ L
Sbjct: 678 SKEYNRDEIAWKILIDGLLQKGNTADCSRLLSFMEEQNCRPGSAIYSRL 726


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 169/379 (44%), Gaps = 20/379 (5%)

Query: 238 YNRVIQYLAKADKLEMS-----YCCFKKVLDS-----------DCKIDTQSYNVLMTLFL 281
           + R+++   KADK   +      CC K+  D+            C  D  SY +++    
Sbjct: 31  FGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLC 90

Query: 282 NKGLPYKAFEIYESM--EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           +     +A ++   M  E+G CS D  TY  +I    K G++  A  L+ EM ++ F P 
Sbjct: 91  DDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPD 150

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
                S+++++ KA  +D +  +  +M   G  P+   Y S+I  Y+  G+ + A +++ 
Sbjct: 151 VVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFR 210

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           EM   G  P+   +   ++S  K G+   A  IF  M   G  P   TY  LL  +A+ G
Sbjct: 211 EMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEG 270

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SAS 518
                M  +N+M   G+      +T L+   AKR ++D A  IL EM+  G S DV + S
Sbjct: 271 CFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYS 330

Query: 519 DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVE 577
            ++    + G +  A+     M  +G++ N  +   L +  C    L ++ + + E    
Sbjct: 331 TLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNN 390

Query: 578 SAAKVDLVLYTSVLAHLVR 596
              + ++  + S++  + +
Sbjct: 391 GIPRPNIAFFNSIVHSICK 409



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 131/278 (47%), Gaps = 3/278 (1%)

Query: 222 EMVHDSSKNGISL--FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           E+V++   NGI     + +N ++  + K  ++  ++  F  V D   + D   +N L+  
Sbjct: 382 ELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDG 441

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           +   G   KAF + ++M       D  TY  ++    KSGR+D  + LF+EM ++  +P+
Sbjct: 442 YCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPT 501

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              +  ++D + +AGR   + K+  EM GCG   S P Y  +++   +    D A+ ++ 
Sbjct: 502 TVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQ 561

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           ++     + N      +I S     + + A  +F+ +  +G +P  STY  ++      G
Sbjct: 562 KLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEG 621

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYT-ALLTLLAKRKLV 496
            V+ A  +++SM  +G  P        + TLL K ++V
Sbjct: 622 SVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKGEIV 659



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 107/235 (45%), Gaps = 7/235 (2%)

Query: 196 GDECYVMLFDVLNESRDFDGML----SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251
           G+   +++F+ L +     G +    S+ D M+  S+  G   F+ YN ++    K+ ++
Sbjct: 427 GERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMI--SAGIGPDTFT-YNTLVNGYFKSGRI 483

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           +     F+++ D   K  T +YN+++      G    A ++   M     ++   TY ++
Sbjct: 484 DDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNII 543

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           +  L ++   D AI +FQ++   N + +     ++++SM    R + +  ++  +   G 
Sbjct: 544 LKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGL 603

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
            P+A  Y  +I +  K G ++ A  ++  M  +G  P   L    I +  + G++
Sbjct: 604 VPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKGEI 658


>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 878

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 132/625 (21%), Positives = 252/625 (40%), Gaps = 108/625 (17%)

Query: 238 YNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           YN +I   AK +   E+     ++++ + C  D  +YN L+   + KG      ++   M
Sbjct: 263 YNAIIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKTCVAKGRWKLCRDLLAEM 322

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ-EMKERNFRPSFNIFASLVDSMGKAGR 355
           E      D  TY   + +L K GR+D A      EM  +N  P+   +++L+    KA R
Sbjct: 323 EWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNIWPNVVTYSTLMAGYSKAER 382

Query: 356 LDTSMKVY-----------------------------------MEMQGCGHRPSAPMYVS 380
            + ++ +Y                                    EM+ CG +     Y +
Sbjct: 383 FEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTYNA 442

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LIE Y +  K     +L+DEM+     PN   ++ +I+ + K      AM ++ ++++ G
Sbjct: 443 LIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQEG 502

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA-KRKLVDVA 499
                  YS L++    +G ++S+++L + MT  G RP + TY +++      ++L  + 
Sbjct: 503 MKTDVVFYSALIDALCKNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAFKIGQQLPALE 562

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYIKD-----GSVDHALRWLRFMGS--SGI------- 545
             +    +   + +  S+S +++   +D     G+ D  ++ L  + +  +G+       
Sbjct: 563 CAVDTPFQANEHQIKPSSSRLIVGNFQDQKTDIGNNDEIMKMLEQLAAEKAGLTKKDKRS 622

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
           R +NF + Q+F+                   E   K ++V ++++L     C+  Q+   
Sbjct: 623 RQDNFFIVQIFQKMH----------------EMEIKPNVVTFSAILNACSCCETFQDASK 666

Query: 606 LMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNY 665
           L+  L     + +    GL  G    +Q +    +  F  +++ L+   A  F N L + 
Sbjct: 667 LLDALRVFDSQVYGVAHGLLMG---HRQGIWDQTQTLFDELEH-LDSSTASAFYNALTDM 722

Query: 666 LVLMGQI---------NRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAV 716
           L   GQ           R R VWK  +  +              SLD+   S GAA   V
Sbjct: 723 LWHFGQKLGAQMVVIEGRNRNVWKGGWSTE--------------SLDLHLTSCGAACAMV 768

Query: 717 MHTLHRFRKRMLYYGVVPRRIKLVTG----------PTLKIVIAQMLSSVESPFEVSKVV 766
              L   R  +     +P  + ++TG           TL+  +  +L+ + +PF++S+  
Sbjct: 769 HTWLLELRTTVFGGQKLPPILSILTGWGKHSKVVGNGTLRKAVEALLNGIGAPFQISECN 828

Query: 767 L---RAPGDSVMEWFKKPIVQQFLL 788
           L   ++ G  V  W ++P     LL
Sbjct: 829 LGRFKSEGPEVAAWLRQPSTLNVLL 853



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 93/226 (41%), Gaps = 40/226 (17%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253
           P    Y  L    +++  F+  L+++DEM H   + + +S    YN ++   A     E 
Sbjct: 365 PNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVS----YNTLVGLYANLGWFEE 420

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   FK++     K D  +YN L+  +   G   K  E+                     
Sbjct: 421 AVGKFKEMECCGIKNDVVTYNALIEGY---GRHNKYVEVQ-------------------- 457

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
                       KLF EMK R   P+   +++L+    K      +M VY E++  G + 
Sbjct: 458 ------------KLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQEGMKT 505

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
               Y +LI++  K G ++++LRL D M   G RPN   +  II++
Sbjct: 506 DVVFYSALIDALCKNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDA 551



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 9/225 (4%)

Query: 375 APMYVSLIESYAKAGKLDTALRLWD-EMRIAGFRPNFG-LFTMIIESHAKSGKLDIAMSI 432
           A  YV L++ +A  G L  A R +D  M  A      G L + +I +  +  K+++A+ +
Sbjct: 153 AEDYVYLLKEFANTGDLLLATRTYDFAMSRATDNTFMGKLTSNMIRTLGRLKKIELALDL 212

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F +    G+  T  ++S ++     + +   A+ L  SM   GL P L TY A++   AK
Sbjct: 213 FEESRTRGYGNTVYSFSAMISALGRNNRFSEAVSLLRSMGKFGLEPNLVTYNAIIDAGAK 272

Query: 493 RKLV-DVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
            +L  ++  K L EM   G   D ++ + +L   +  G        L  M   GI  + +
Sbjct: 273 GELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKTCVAKGRWKLCRDLLAEMEWKGIGRDVY 332

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAK---VDLVLYTSVLA 592
                 ++  K    + A+  ++  VE  AK    ++V Y++++A
Sbjct: 333 TYNTYVDALCKGGRMDLARHAID--VEMPAKNIWPNVVTYSTLMA 375


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 186/402 (46%), Gaps = 28/402 (6%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSS-KNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  +F VL +       L+L++ MV      N  +     + + +     D L+M    F
Sbjct: 182 YNAVFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKM----F 237

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++L+     D + Y VL++   N+G    A  +  SM++  C  D  TY + +  L K+
Sbjct: 238 DEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKA 297

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR+D A   F+ +++  F      ++ L+D + +AGR D  +  Y EM G    P   +Y
Sbjct: 298 GRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLY 357

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI  +A+AG+   A  L DEM+  GF P+   +  ++++    G +D A S+ ++M +
Sbjct: 358 TILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQ 417

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
              +   +T++ ++      G +D AM++++ M   G  P + TY AL+  L +  +++ 
Sbjct: 418 NNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLE- 476

Query: 499 AAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRF-MGSSGIRTNNFIVRQLFE 557
            A++L     MG +  +                    +LR  +G++ +R    + R+L +
Sbjct: 477 EARMLFHKMEMGNNPSL--------------------FLRLTLGANQVRDTESL-RKLVD 515

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              ++     A  LL   +ES    D+V Y +++  L + ++
Sbjct: 516 GMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKN 557



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 184/412 (44%), Gaps = 6/412 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +++FD +    +    +  +A+  ++   + A + + +   F ++ D DC+     YN +
Sbjct: 126 VAMFDALADARAAGLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAV 185

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
             + +++G+   A  +Y  M    C  + +TY +++  L K G    A+K+F EM ER  
Sbjct: 186 FQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGI 245

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P   I+  L+ S+   GR++ + ++   M+  G  P    Y   +    KAG++D A  
Sbjct: 246 VPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFH 305

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
            ++ ++  GF      ++ +I+   ++G+ D  +S +T+M      P  + Y+ L+   A
Sbjct: 306 RFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFA 365

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            +G+   A  L + M   G  P    Y  LL  L     +D A  ++ EM      +D +
Sbjct: 366 EAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDST 425

Query: 517 ASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
             ++++  + K G +D A++    MG  G          L +   +  + E A+ L    
Sbjct: 426 THNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHK- 484

Query: 576 VESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH--KAHAFLCGLF 625
           +E      L L  ++ A+ VR  D ++ R L+  +  +    KA+  L G+ 
Sbjct: 485 MEMGNNPSLFLRLTLGANQVR--DTESLRKLVDGMCQSGQVLKAYKLLRGII 534



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 152/320 (47%), Gaps = 18/320 (5%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D L ++  FD  LS + EM+  S    I+L   Y  +I+  A+A + + ++    
Sbjct: 322 YSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITL---YTILIRRFAEAGRTKDAFLLLD 378

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++ D     DT  YN L+    + G   +A  +   M +    LD +T+ +MI  L K G
Sbjct: 379 EMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKG 438

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            +D A+++F EM E    P+   + +L+D + +AG L+ +  ++ +M+  G+ PS  + +
Sbjct: 439 LIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKME-MGNNPSLFLRL 497

Query: 380 SL--------------IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           +L              ++   ++G++  A +L   +  +G  P+   +  +I    K+  
Sbjct: 498 TLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKN 557

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           LD A+ +F +++  G  P   TY  L++    + + + A  L+ ++  +G  P L  Y  
Sbjct: 558 LDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFPSLPIYNT 617

Query: 486 LLTLLAKRKLVDVAAKILLE 505
           ++  L + K +  A  + L+
Sbjct: 618 MMRSLCRMKKLSQAINLWLD 637



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 53/294 (18%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           +   +VP   CY  L   L +  + D   SL  EM+              N V+      
Sbjct: 381 KDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQ-------------NNVV------ 421

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
                              +D+ ++N+++     KGL  KA ++++ M +  C     TY
Sbjct: 422 -------------------LDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTY 462

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI--------------FASLVDSMGKAG 354
             +I  L ++G L+ A  LF +M+  N  PS  +                 LVD M ++G
Sbjct: 463 NALIDGLYRAGMLEEARMLFHKMEMGN-NPSLFLRLTLGANQVRDTESLRKLVDGMCQSG 521

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++  + K+   +   G  P    Y +LI    KA  LD ALRL+ E+++ G  P+   + 
Sbjct: 522 QVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYG 581

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
            +I+   ++ + + A  +F ++ R+G  P+   Y+ ++       ++  A+ L+
Sbjct: 582 TLIDGLWRAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAINLW 635



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 139/353 (39%), Gaps = 54/353 (15%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV----------- 261
            D  + +FDEM        +     YN +I  L +A  LE +   F K+           
Sbjct: 440 IDKAMQVFDEMGEHGCHPTVM---TYNALIDGLYRAGMLEEARMLFHKMEMGNNPSLFLR 496

Query: 262 --LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
             L ++   DT+S   L+      G   KA+++   + +     D  TY  +I  L K+ 
Sbjct: 497 LTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAK 556

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            LD A++LF+E++ +   P    + +L+D + +A R + +  ++  +   G  PS P+Y 
Sbjct: 557 NLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFPSLPIYN 616

Query: 380 SLIESYAKAGKLDTALRLW-------------DEMRIAGFRPNF---------------- 410
           +++ S  +  KL  A+ LW             DE+ IA  R  F                
Sbjct: 617 TMMRSLCRMKKLSQAINLWLDYLPKKYNLSPEDEV-IANARKCFEDGFLDETVKELIKID 675

Query: 411 --------GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
                     +T+ +    +  K+D A+ IF  +E  G + TP+  + L+        ++
Sbjct: 676 QVYGSLNPNPYTIWVIGLCQVRKIDDALRIFHILEEFGIVVTPACCALLINYLCWDRNLN 735

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           +A+ +     S            LL  L  R     A  +   M  +GY +DV
Sbjct: 736 AAVDIMMYTLSKRFIVSQPVGNRLLRSLCIRYRRHDAQALSWRMHLVGYDMDV 788


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 163/363 (44%), Gaps = 35/363 (9%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           S+FR   R S  +P    Y  + D   +       L L+ EM+ D     +  F     +
Sbjct: 249 SMFR-TMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGI---L 304

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQS---------YNVLMTLFLNKGLPYKAFEI 292
           I  L K D++  +    +K L     ID  S         YN L+  +   G   +A  +
Sbjct: 305 IDGLCKTDEMVSA----RKFL-----IDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  +EK E   D  TY ++I  L    R++ A  L QEMK++ F P+   + +L+D   K
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G ++ +++V  +M   G  P+   + +LI+ Y KAGK++ A+ L+ EM I G  P+   
Sbjct: 416 EGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVA 475

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY---- 468
           +T +I+ H K G    A  +  +M+ AG  P   T SCL++     G++  A+KL+    
Sbjct: 476 YTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKT 535

Query: 469 ---------NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
                    N +  +   P    YTAL+  L     +  A+K   +M+  G   DV    
Sbjct: 536 GTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCI 595

Query: 520 VLM 522
           V++
Sbjct: 596 VII 598



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 174/388 (44%), Gaps = 6/388 (1%)

Query: 186 WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQY 244
           W   +   +P  +   M+ D L +   FD M  ++ +MV   +S N ++    Y  +I  
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVT----YGTLIDG 202

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
             +      ++  F ++++         Y +L+     +    +A  ++ +M       +
Sbjct: 203 CCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPN 262

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  M+    K   +  A++L+QEM      P+   F  L+D + K   + ++ K  +
Sbjct: 263 LYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLI 322

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           +M   G  P+  +Y  LI+ Y KAG L  AL L  E+      P+   ++++I+      
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           +++ A  +  +M++ GFLP   TY+ L++ +   G ++ A+++ + MT  G+ P + T++
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS 543
            L+    K   ++ A  +  EM   G   DV A   L+  + KDG+   A R  + M  +
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPL 571
           G+  N F +  L +   K+     A  L
Sbjct: 503 GLHPNVFTLSCLIDGLCKDGRISDAIKL 530



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 1/322 (0%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           Q+ N+++   + KG     +++Y  M     S +  TY  +I    + G    A +LF E
Sbjct: 159 QACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDE 218

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M E+   P+  I+  L+  +    R+  +  ++  M+  G  P+   Y ++++ Y K   
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH 278

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +  AL L+ EM   G  PN   F ++I+   K+ ++  A     DM   G +P    Y+C
Sbjct: 279 VKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNC 338

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L++ +  +G +  A+ L++ +    + P + TY+ L+  L     ++ A  +L EMK  G
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 511 YSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
           +  +    + L+  Y K+G+++ A+     M   GI  N      L +   K    E+A 
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 570 PLLETYVESAAKVDLVLYTSVL 591
            L    V      D+V YT+++
Sbjct: 459 GLYTEMVIKGLLPDVVAYTALI 480



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 112/253 (44%), Gaps = 13/253 (5%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    K   +E +     ++ +   + +  +++ L+  +   G    A  +Y  M
Sbjct: 405 TYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEM 464

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D   Y  +I    K G    A +L +EM+E    P+    + L+D + K GR+
Sbjct: 465 VIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRI 524

Query: 357 DTSMKVYMEMQGC---GHR----------PSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
             ++K+++   G    G +          P+  MY +LI+     G++  A + + +MR 
Sbjct: 525 SDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRC 584

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
           +G RP+     +II+ H ++  L   M +  D+ + G +P  S Y  L + +  SG + S
Sbjct: 585 SGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKS 644

Query: 464 AMKLYNSMTSAGL 476
           A++    ++  G+
Sbjct: 645 ALRCSEDLSGIGI 657



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 117/263 (44%), Gaps = 13/263 (4%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I+ L   D++E +    +++       +  +YN L+  +  +G   KA E+   M
Sbjct: 370 TYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM 429

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     +  T+  +I    K+G+++AA+ L+ EM  +   P    + +L+D   K G  
Sbjct: 430 TEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNT 489

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW-------------DEMRI 403
             + +++ EMQ  G  P+      LI+   K G++  A++L+             +E+  
Sbjct: 490 KEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDR 549

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
           +   PN  ++T +I+     G++  A   F+DM  +G  P   T   +++ H  +  +  
Sbjct: 550 SLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRD 609

Query: 464 AMKLYNSMTSAGLRPGLSTYTAL 486
            M L   +   G+ P  S Y  L
Sbjct: 610 VMMLQADILKMGIIPNSSVYRVL 632


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 168/403 (41%), Gaps = 40/403 (9%)

Query: 155 LDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQ--SWYVPGDECYVMLFDVLNESRD 212
           LD++   P +V     L+ + DS           RQ      P    Y +L +   +   
Sbjct: 207 LDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESG 266

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM---------SYCC------ 257
               + L DEM +  SK  +     YN +I  + K  +L+          SY C      
Sbjct: 267 VGQAMKLLDEMRNKGSKPDVV---TYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT 323

Query: 258 --------------------FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
                                  +L   C     ++N+L+     +GL  +A +I E M 
Sbjct: 324 HNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMP 383

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C+ +  +Y  ++    K  ++D AI+    M  R   P    + +L+ ++ K G++D
Sbjct: 384 MHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD 443

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++++  ++   G  P    Y ++I+  +K GK + A++L DEMR  G +P+   ++ ++
Sbjct: 444 VAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLV 503

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              ++ GK+D A+  F D+E  G  P   TY+ ++     S Q D A+     M S   +
Sbjct: 504 SGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCK 563

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           P  +TYT L+  +A   L   A  +L E+ + G     SA  V
Sbjct: 564 PTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQV 606



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 148/329 (44%), Gaps = 4/329 (1%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YNVL++ +   G    A ++ + M     + D  TY  ++ +L  SG+L  A+++ 
Sbjct: 183 DVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVL 239

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
               ++   P    +  L+++  K   +  +MK+  EM+  G +P    Y  LI    K 
Sbjct: 240 DRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 299

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+LD A++  + M   G +PN     +I+ S   +G+   A  + +DM R G  P+  T+
Sbjct: 300 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 359

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+      G +  A+ +   M   G  P   +Y  LL    K K +D A + L  M +
Sbjct: 360 NILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVS 419

Query: 509 MGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D+   + L+  + KDG VD A+  L  + S G          + +   K    E 
Sbjct: 420 RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTER 479

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           A  LL+       K D++ Y+S+++ L R
Sbjct: 480 AIKLLDEMRRKGLKPDIITYSSLVSGLSR 508



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 146/322 (45%), Gaps = 4/322 (1%)

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+  F   G   KA  + E +E+     D  TY ++I    KSG +D A+++   M   N
Sbjct: 155 LIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---N 211

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + +++ ++  +G+L  +M+V          P    Y  LIE+  K   +  A+
Sbjct: 212 VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAM 271

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           +L DEMR  G +P+   + ++I    K G+LD A+    +M   G  P   T++ +L   
Sbjct: 272 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 331

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD- 514
            S+G+   A KL + M   G  P + T+  L+  L ++ L+  A  IL +M   G + + 
Sbjct: 332 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNS 391

Query: 515 VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
           +S + +L  + K+  +D A+ +L  M S G   +      L  +  K+   + A  +L  
Sbjct: 392 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 451

Query: 575 YVESAAKVDLVLYTSVLAHLVR 596
                    L+ Y +V+  L +
Sbjct: 452 LSSKGCSPVLITYNTVIDGLSK 473



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 4/231 (1%)

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           +H  + N +S    YN ++    K  K++ +      ++   C  D  +YN L+T     
Sbjct: 384 MHGCTPNSLS----YNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKD 439

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           G    A EI   +    CS    TY  +I  L+K G+ + AIKL  EM+ +  +P    +
Sbjct: 440 GKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITY 499

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
           +SLV  + + G++D ++K + +++G G RP+A  Y S++    K+ + D A+     M  
Sbjct: 500 SSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMIS 559

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              +P    +T++IE  A  G    A+ +  ++   G +   S     ++M
Sbjct: 560 KRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAVKM 610



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 3/208 (1%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L ++G L+   K  + M  R   P      SL+    + G+   +  V   ++  G  P 
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI  Y K+G++D AL++ D M +A   P+   +  I+ +   SGKL  AM +  
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRMNVA---PDVVTYNTILRTLCDSGKLKQAMEVLD 240

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
              +    P   TY+ L+E       V  AMKL + M + G +P + TY  L+  + K  
Sbjct: 241 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 300

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLM 522
            +D A K L  M + G   +V   ++++
Sbjct: 301 RLDEAIKFLNNMPSYGCQPNVITHNIIL 328


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 159/342 (46%), Gaps = 4/342 (1%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F  Y  +IQ L K  +LE +     K++      D  +Y  ++     +   ++A +  E
Sbjct: 11  FVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLE 70

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M     + +  TY ++I  L K GR+D A+ L  +M+++   P+   + SL+  + KA 
Sbjct: 71  EMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAE 129

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R   +  +  EM   G  P    Y +LI  + K+ K D ALR+++++   GFRP+   ++
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAG-FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
            +I+   K G+L  A+ +F  M ++G  +P   TY+ L+      G++D AM L   M  
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE 249

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDH 532
            G  P + TYT L+    K   +D A  +L +M   G + DV     LM  + ++  +  
Sbjct: 250 TGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSD 309

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLE 573
           A+  L  M         +    + +  C  N L E+ K +LE
Sbjct: 310 AVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLE 351



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 3/298 (1%)

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           CS D  TY  +I  L K  RL+ A+    +M  + F P    + +++ ++    RL  + 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           K   EM      P+   Y  LI+   K G++D A+ L  +MR     P    +  +I   
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGL 125

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K+ +   A  +  +M  +G +P   TY+ L+     S + D A++++  + + G RP +
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSV--DVSASDVLMVYIKDGSVDHALRWLR 538
            TY+ L+  L K   +  A  +   M   G  +   V+ + ++  + + G +D A+  L 
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLE 245

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            M  +G   +      L     K A  + A  LL          D+V +TS++  L R
Sbjct: 246 RMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR 303



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 149/358 (41%), Gaps = 42/358 (11%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           S  +P    Y  L     +S+  D  L +F+++V    +  +  +S    +I  L K  +
Sbjct: 144 SGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC---LIDGLCKEGR 200

Query: 251 LEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           L+ +   F +++ S  C  +T +YN L++ F   G   +A  + E M +   S D  TY 
Sbjct: 201 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++    K  RLD A  L  +M  +   P    F SL+D + +  RL  ++ +  EM+  
Sbjct: 261 TLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK 320

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTA---------------------------------LR 396
              P+   Y ++++ Y +A +L+ A                                 + 
Sbjct: 321 SCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAME 380

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM-ERAGFLPTPSTYSCLLEMH 455
           L +E R     P+  ++T +I+   +  K+D A  ++  M E  G LP   TYS L+   
Sbjct: 381 LVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGL 440

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            ++G +D A          G  P + TY  L+    K    + A ++L +M   G+ V
Sbjct: 441 CNAGMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFGV 494


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 177/385 (45%), Gaps = 3/385 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P  E Y  L +V   +  +   L +FD+M+        S  S+YN +I     + +   +
Sbjct: 120 PDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSR-SSYNNLINACGSSGQWFKA 178

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               K++ D+    D  +YN++++ F + G P  A   Y+ +   +  LD  ++ +++  
Sbjct: 179 LEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILNC 238

Query: 315 LAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           L K GR + AI LF+EM++ N   P    F +L+      G++  + + +  M G G  P
Sbjct: 239 LTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAP 298

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   + +L+ +YA  G    AL++   +  A F P+   ++ ++ +  K+G  + A  +F
Sbjct: 299 TIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVF 358

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M++    P   T++ L++ +AS+G+ + A +L + M  A + P + T  +L    A+ 
Sbjct: 359 DLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARA 418

Query: 494 KLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
           +  +    +  E K    +++V A +  +  YI+ G  D A   L  M    +R N    
Sbjct: 419 RCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTF 478

Query: 553 RQLFESCMKNALYESAKPLLETYVE 577
             L  +      Y  A+ L +  V+
Sbjct: 479 LLLINAAGSLGDYREARTLYDKMVD 503



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/408 (21%), Positives = 172/408 (42%), Gaps = 7/408 (1%)

Query: 194 VPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKL 251
           VP D   + ++ + L +   F+  ++LF EM      NG       +N ++   A   ++
Sbjct: 225 VPLDRYSHNIILNCLTKLGRFEDAINLFKEM---RKMNGCEPDVVTFNALLHVYALCGQI 281

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
             +   F  ++         ++N L+  + ++G+  +A ++   + K +   D  +Y  +
Sbjct: 282 TKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSL 341

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           + +  K+G  + A ++F  MK+R+ +P+   F  L+D+   AG+ + + ++  +M     
Sbjct: 342 LNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARI 401

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+     SL  + A+A   +    ++ E ++     N   F   I ++ ++G+ D A +
Sbjct: 402 EPNVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKA 461

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +   ME     P   T+  L+    S G    A  LY+ M   G+   +   +AL+   A
Sbjct: 462 LLEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALINAFA 521

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
           K  + + A  I  +M+  G   +V     LM+  +    D A      M ++GI  ++  
Sbjct: 522 KHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAYR--MYDDAQLACEEMVAAGITPDSIA 579

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              LF +  K    E    + ++        D V YT  L    R +D
Sbjct: 580 FGTLFVALNKANRSEKVLQIEKSSRARGILFDDVAYTETLLACSRLKD 627



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 140/328 (42%), Gaps = 4/328 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I   A+  + + +   F ++    CK D ++YN LM +    G    A +I++ M 
Sbjct: 90  YNCMIWLHARHQRADQARGLFYEMKVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDML 149

Query: 298 KGECSL--DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +    +    S+Y  +I +   SG+   A+++ + M +    P    +  ++ +    G+
Sbjct: 150 QAPKPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQ 209

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR-IAGFRPNFGLFT 414
              ++  Y  +           +  ++    K G+ + A+ L+ EMR + G  P+   F 
Sbjct: 210 PRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFN 269

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++  +A  G++  A   F  M   G  PT  T++ LL  +AS G    A+++   +  A
Sbjct: 270 ALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKA 329

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
              P + +Y++LL    K    + A ++   MK      ++   + LM  Y   G  + A
Sbjct: 330 KFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERA 389

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMK 561
              L  M  + I  N   +  LF +C +
Sbjct: 390 RELLHDMAEARIEPNVVTICSLFAACAR 417



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 155/373 (41%), Gaps = 42/373 (11%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC-SLDGSTYELMIPSLAKSGRLDAAI 325
           + + +++  L++     G    +  ++  M+  +C       Y  MI   A+  R D A 
Sbjct: 48  RFNRKNFPALISEITRTGALEHSLRVFNWMKNQKCYRARTDIYNCMIWLHARHQRADQAR 107

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP---MYVSLI 382
            LF EMK    +P    + +L++  G+AG+   +++++ +M     +P AP    Y +LI
Sbjct: 108 GLFYEMKVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQ-APKPIAPSRSSYNNLI 166

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES--------HA------------- 421
            +   +G+   AL +   M   G  P+   + +I+ +        HA             
Sbjct: 167 NACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVP 226

Query: 422 --------------KSGKLDIAMSIFTDMERA-GFLPTPSTYSCLLEMHASSGQVDSAMK 466
                         K G+ + A+++F +M +  G  P   T++ LL ++A  GQ+  A +
Sbjct: 227 LDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQE 286

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYI 525
            ++ M   G+ P + T+  LL   A + +   A +++  +    +  D VS S +L  + 
Sbjct: 287 TFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFG 346

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           K G  + A      M     + N      L ++      YE A+ LL    E+  + ++V
Sbjct: 347 KAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVV 406

Query: 586 LYTSVLAHLVRCQ 598
              S+ A   R +
Sbjct: 407 TICSLFAACARAR 419



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 116/259 (44%), Gaps = 6/259 (2%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + K++D    +  +  + L+  F   G+  +A  I++ M K  C  +  TY     SL  
Sbjct: 498 YDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTY----TSLMI 553

Query: 318 SGRL-DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           + R+ D A    +EM      P    F +L  ++ KA R +  +++    +  G      
Sbjct: 554 AYRMYDDAQLACEEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDDV 613

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y   + + ++    +TAL L++ M+    R    +   ++ +  +SGKLD    +F ++
Sbjct: 614 AYTETLLACSRLKDWETALFLYEGMKKRRLRLTNTMVINLLSAVGRSGKLDRLHKVFLEL 673

Query: 437 ERA-GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           ++  GF+PT   Y+ L++ ++   +    +++   +    L P   TY  +L+ L++ +L
Sbjct: 674 QQQIGFVPTLQMYNILIDSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLEL 733

Query: 496 VDVAAKILLEMKTMGYSVD 514
            +   +I  E+   G   D
Sbjct: 734 WETYLEIYGEVLAQGMEPD 752



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 128/316 (40%), Gaps = 41/316 (12%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    +++L +      D+    +L+D+MV       +   SA   +I   AK      +
Sbjct: 473 PNGVTFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSA---LINAFAKHGMYNEA 529

Query: 255 YCCFKKVLDSDCKIDTQSYNVLM-----------------------------TLF--LNK 283
              F  +  + CK +  +Y  LM                             TLF  LNK
Sbjct: 530 RTIFDDMRKAGCKANVVTYTSLMIAYRMYDDAQLACEEMVAAGITPDSIAFGTLFVALNK 589

Query: 284 G-LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
                K  +I +S        D   Y   + + ++    + A+ L++ MK+R  R +  +
Sbjct: 590 ANRSEKVLQIEKSSRARGILFDDVAYTETLLACSRLKDWETALFLYEGMKKRRLRLTNTM 649

Query: 343 FASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
             +L+ ++G++G+LD   KV++E+ Q  G  P+  MY  LI+SY++  K    L +   +
Sbjct: 650 VINLLSAVGRSGKLDRLHKVFLELQQQIGFVPTLQMYNILIDSYSRGLKWRKCLEVLGCI 709

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
           +     PN+  +  I+   ++    +  + I+ ++   G  P  +     +  + S G  
Sbjct: 710 KKDILEPNWKTYEPILSCLSQLELWETYLEIYGEVLAQGMEPDYNILKISVTAYTSLGME 769

Query: 462 DSAMKLYNSMTSAGLR 477
           + A     S+T A L+
Sbjct: 770 EEA-----SLTEARLQ 780


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 136/265 (51%), Gaps = 3/265 (1%)

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           K+E ++   +++ D DC  DT SY + +    + G   +A +++E+M +  C  D  TY 
Sbjct: 318 KVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYG 377

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           ++I +  K G + AA  + + M +   +P+  I+  ++D   K+ RL+ ++++Y  +   
Sbjct: 378 IIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKD 437

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEM--RIAGFRPNFGLFTMIIESHAKSGKLD 427
           G  PS   Y ++I +  K  K+D AL L  EM  R     P+   ++MII    K G  +
Sbjct: 438 GILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEE 497

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A  +  +M   G +P   TY+ L++  A +G+V  AM+L   M  AG+ P   TY  L+
Sbjct: 498 RAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLV 557

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYS 512
            +L  R  VD A  +L EM   G++
Sbjct: 558 QILC-RSDVDAAWDLLQEMMRNGHT 581



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 164/365 (44%), Gaps = 5/365 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y P    Y  L D L+++   D    L D MV   ++       AY  ++  L K  +++
Sbjct: 229 YKPDIIAYSSLIDGLSKAGRVDEARKLVDLMV---ARGPPPTAVAYTSIVAGLCKCGRIQ 285

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +    +++     +    +Y+ ++T ++  G   KAF + E M   +C+ D  +Y + I
Sbjct: 286 EAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFI 345

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            +L   GR + A K+F+ M E+  +P  + +  ++D+  K G +  +  V   M     +
Sbjct: 346 EALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVK 405

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+  +Y  +++ + K+ +L+ AL L+  +   G  P+   +  +I +  K  K+D A+ +
Sbjct: 406 PNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALEL 465

Query: 433 FTDMER--AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
             +M+R      P+  TYS ++      G  + A  L   M   G+ P   TYT+L+  L
Sbjct: 466 LREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTL 525

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           A    V  A ++L EM   G   D      L+  +    VD A   L+ M  +G   N F
Sbjct: 526 AGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSDVDAAWDLLQEMMRNGHTPNEF 585

Query: 551 IVRQL 555
             + +
Sbjct: 586 TFKAV 590



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 161/361 (44%), Gaps = 34/361 (9%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S++N +++  A  D  E+     +++       +  ++ V+++    +    KA   + S
Sbjct: 129 SSFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNS 188

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +   +C     TY +++  L K+ +++ A  +F+EM  + ++P    ++SL+D + KAGR
Sbjct: 189 VSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGR 248

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D + K+   M   G  P+A  Y S++    K G++  A++   EMR    RP    ++ 
Sbjct: 249 VDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSF 308

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I+  +   GK++ A ++  +M      P   +Y+  +E   S G+ + A K++ +M   G
Sbjct: 309 IVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKG 368

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALR 535
            +P + TY                          G  +D         + K+GS+  A  
Sbjct: 369 CKPDMHTY--------------------------GIIID--------NFCKEGSMAAATH 394

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            LR M  + ++ N +I   + +  +K++  E A  L +  ++       V Y +V+  L 
Sbjct: 395 VLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALC 454

Query: 596 R 596
           +
Sbjct: 455 K 455



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 132/318 (41%), Gaps = 8/318 (2%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM--KVYM 364
           T   ++ +L + G L  A+  FQ         SFNI        G A R D  +   +  
Sbjct: 98  TRNSLLLALVRGGHLSDALGFFQSSISEPNVSSFNILLR-----GFAARDDFEVVNALLR 152

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           EM+  G   +   +  ++ +      LD A+  ++ +      P    +T++++   K+ 
Sbjct: 153 EMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKAH 212

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           K++ A  +F +M R G+ P    YS L++  + +G+VD A KL + M + G  P    YT
Sbjct: 213 KVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYT 272

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSS 543
           +++  L K   +  A K + EM+       V   S ++  YI  G V+ A   +  M   
Sbjct: 273 SIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADR 332

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
               +        E+       E A+ + ET VE   K D+  Y  ++ +  +       
Sbjct: 333 DCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAA 392

Query: 604 RHLMAILSATKHKAHAFL 621
            H++ ++     K + ++
Sbjct: 393 THVLRLMDKAAVKPNRYI 410


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 185/383 (48%), Gaps = 14/383 (3%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           D D +LSL +  + Q    PG   Y  + D L   ++ +  L+LF EM +   +  +   
Sbjct: 236 DIDLALSLLKKME-QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV-- 292

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
             YN +I+ L    +   +      +++     +  +++ L+  F+ +G   +A ++Y+ 
Sbjct: 293 -TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 351

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M K     D  TY  +I       RLD A  +F+ M  ++  P+   + +L+    KA R
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D  M+++ EM   G   +   Y +LI  + +A + D A  ++ +M   G  P+   +++
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++    +GK++ A+ +F  ++R+   P   TY+ ++E    +G+V+    L+ S++  G
Sbjct: 472 LLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS----- 529
           ++P + TYT +++   ++ L + A  +  EMK  G   D    + L+  +++DG      
Sbjct: 532 VKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASA 591

Query: 530 -VDHALRWLRFMGSS---GIRTN 548
            +   +R  RF+G +   G+ TN
Sbjct: 592 ELIREMRSCRFVGDASTIGLVTN 614



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 160/361 (44%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I  L + ++   +     +++   C+ D  +Y +++     +G    A  + + M
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM 247

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+G+       Y  +I +L     ++ A+ LF EM  +  RP+   + SL+  +   GR 
Sbjct: 248 EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 307

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++  +M      P+   + +LI+++ K GKL  A +L+DEM      P+   ++ +
Sbjct: 308 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 367

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I       +LD A  +F  M      P   TY+ L++    + +VD  M+L+  M+  GL
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
                TYT L+    + +  D A  +  +M + G   D+    +L+  +  +G V+ AL 
Sbjct: 428 VGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
              ++  S +  + +    + E   K    E    L  +      K ++V YT++++   
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFC 547

Query: 596 R 596
           R
Sbjct: 548 R 548



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 150/344 (43%), Gaps = 1/344 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D+ ++N L+          +A  + + M    C  D  TY +++  L K G +D A+ L 
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL 244

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           ++M++    P   I+ +++D++     ++ ++ ++ EM   G RP+   Y SLI      
Sbjct: 245 KKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNY 304

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+   A RL  +M      PN   F+ +I++  K GKL  A  ++ +M +    P   TY
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 364

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S L+       ++D A  ++  M S    P + TY  L+    K K VD   ++  EM  
Sbjct: 365 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQ 424

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   + V+ + ++  + +    D+A    + M S G+  +      L +    N   E+
Sbjct: 425 RGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVET 484

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
           A  + E    S  + D+  Y  ++  + +    ++   L   LS
Sbjct: 485 ALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 528



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 161/391 (41%), Gaps = 1/391 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  V+  L K   ++++    KK+     +     YN ++    N      A  ++  M
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM 282

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +      +  TY  +I  L   GR   A +L  +M ER   P+   F++L+D+  K G+L
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 342

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + K+Y EM      P    Y SLI  +    +LD A  +++ M      PN   +  +
Sbjct: 343 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 402

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K+ ++D  M +F +M + G +    TY+ L+     + + D+A  ++  M S G+
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P + TY+ LL  L     V+ A  +   ++      D+   ++++  + K G V+    
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWD 522

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   G++ N      +     +  L E A  L     E     D   Y +++   +
Sbjct: 523 LFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHL 582

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFT 626
           R  D+     L+  + + +    A   GL T
Sbjct: 583 RDGDKAASAELIREMRSCRFVGDASTIGLVT 613



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 125/277 (45%), Gaps = 3/277 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           L+DEM+  S    I  +S+   +I      D+L+ +   F+ ++  DC  +  +YN L+ 
Sbjct: 348 LYDEMIKRSIDPDIFTYSS---LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 404

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            F       +  E++  M +     +  TY  +I    ++   D A  +F++M      P
Sbjct: 405 GFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLP 464

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               ++ L+D +   G+++T++ V+  +Q     P    Y  +IE   KAGK++    L+
Sbjct: 465 DIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             + + G +PN   +T ++    + G  + A ++F +M+  G LP   TY+ L+  H   
Sbjct: 525 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRD 584

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           G   ++ +L   M S       ST   +  +L   +L
Sbjct: 585 GDKAASAELIREMRSCRFVGDASTIGLVTNMLHDGRL 621



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 159/393 (40%), Gaps = 4/393 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            D  ++LF +MV       I  FS   +++  +AK +K ++     +++ +     +  +
Sbjct: 62  LDDAVNLFGDMVKSRPFPSIVEFS---KLLSAIAKMNKFDLVISLGEQMQNLGISHNLYT 118

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y++L+  F  +     A  +   M K     D  T   ++       R+  A+ L  +M 
Sbjct: 119 YSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMV 178

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           E  ++P    F +L+  + +  R   ++ +   M   G +P    Y  ++    K G +D
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            AL L  +M      P   ++  II++      ++ A+++FT+M+  G  P   TY+ L+
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
               + G+   A +L + M    + P + T++AL+    K   +  A K+  EM      
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358

Query: 513 VDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D+ + S ++  +     +D A      M S     N      L +   K    +    L
Sbjct: 359 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
                +     + V YT+++    + ++  N +
Sbjct: 419 FREMSQRGLVGNTVTYTTLIHGFFQARECDNAQ 451



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 123/282 (43%), Gaps = 9/282 (3%)

Query: 320 RLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           +LD A+ LF +M K R F PS   F+ L+ ++ K  + D  + +  +MQ  G   +   Y
Sbjct: 61  KLDDAVNLFGDMVKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTY 119

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI  + +  +L  AL +  +M   G+ P+      ++       ++  A+S+   M  
Sbjct: 120 SILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE 179

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G+ P   T++ L+       +   A+ L + M   G +P L TY  ++  L KR  +D+
Sbjct: 180 MGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDL 239

Query: 499 AAKILLEMKTM----GYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           A  +L +M+      G  +  +  D L  Y    +V+ AL     M + GIR N      
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNY---KNVNDALNLFTEMDNKGIRPNVVTYNS 296

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L         +  A  LL   +E     ++V +++++   V+
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 168/403 (41%), Gaps = 40/403 (9%)

Query: 155 LDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQ--SWYVPGDECYVMLFDVLNESRD 212
           LD++   P +V     L+ + DS           RQ      P    Y +L +   +   
Sbjct: 150 LDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESG 209

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM---------SYCC------ 257
               + L DEM +  SK  +     YN +I  + K  +L+          SY C      
Sbjct: 210 VGQAMKLLDEMRNKGSKPDVV---TYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT 266

Query: 258 --------------------FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
                                  +L   C     ++N+L+     +GL  +A +I E M 
Sbjct: 267 HNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMP 326

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C+ +  +Y  ++    K  ++D AI+    M  R   P    + +L+ ++ K G++D
Sbjct: 327 MHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD 386

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++++  ++   G  P    Y ++I+  +K GK + A++L DEMR  G +P+   ++ ++
Sbjct: 387 VAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLV 446

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              ++ GK+D A+  F D+E  G  P   TY+ ++     S Q D A+     M S   +
Sbjct: 447 SGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCK 506

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           P  +TYT L+  +A   L   A  +L E+ + G     SA  V
Sbjct: 507 PTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQV 549



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 4/329 (1%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YNVL++ +   G    A ++ + M       D  TY  ++ +L  SG+L  A+++ 
Sbjct: 126 DVITYNVLISGYCKSGEIDNALQVLDRMNVAP---DVVTYNTILRTLCDSGKLKQAMEVL 182

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
               ++   P    +  L+++  K   +  +MK+  EM+  G +P    Y  LI    K 
Sbjct: 183 DRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 242

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+LD A++  + M   G +PN     +I+ S   +G+   A  + +DM R G  P+  T+
Sbjct: 243 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 302

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+      G +  A+ +   M   G  P   +Y  LL    K K +D A + L  M +
Sbjct: 303 NILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVS 362

Query: 509 MGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D+   + L+  + KDG VD A+  L  + S G          + +   K    E 
Sbjct: 363 RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTER 422

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           A  LL+       K D++ Y+S+++ L R
Sbjct: 423 AIKLLDEMRRKGLKPDIITYSSLVSGLSR 451



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 146/322 (45%), Gaps = 4/322 (1%)

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+  F   G   KA  + E +E+     D  TY ++I    KSG +D A+++   M   N
Sbjct: 98  LIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---N 154

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + +++ ++  +G+L  +M+V          P    Y  LIE+  K   +  A+
Sbjct: 155 VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAM 214

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           +L DEMR  G +P+   + ++I    K G+LD A+    +M   G  P   T++ +L   
Sbjct: 215 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 274

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD- 514
            S+G+   A KL + M   G  P + T+  L+  L ++ L+  A  IL +M   G + + 
Sbjct: 275 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNS 334

Query: 515 VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
           +S + +L  + K+  +D A+ +L  M S G   +      L  +  K+   + A  +L  
Sbjct: 335 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 394

Query: 575 YVESAAKVDLVLYTSVLAHLVR 596
                    L+ Y +V+  L +
Sbjct: 395 LSSKGCSPVLITYNTVIDGLSK 416



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 4/231 (1%)

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           +H  + N +S    YN ++    K  K++ +      ++   C  D  +YN L+T     
Sbjct: 327 MHGCTPNSLS----YNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKD 382

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           G    A EI   +    CS    TY  +I  L+K G+ + AIKL  EM+ +  +P    +
Sbjct: 383 GKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITY 442

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
           +SLV  + + G++D ++K + +++G G RP+A  Y S++    K+ + D A+     M  
Sbjct: 443 SSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMIS 502

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              +P    +T++IE  A  G    A+ +  ++   G +   S     ++M
Sbjct: 503 KRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAVKM 553



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 3/208 (1%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L ++G L+   K  + M  R   P      SL+    + G+   +  V   ++  G  P 
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI  Y K+G++D AL++ D M +A   P+   +  I+ +   SGKL  AM +  
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRMNVA---PDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
              +    P   TY+ L+E       V  AMKL + M + G +P + TY  L+  + K  
Sbjct: 184 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 243

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLM 522
            +D A K L  M + G   +V   ++++
Sbjct: 244 RLDEAIKFLNNMPSYGCQPNVITHNIIL 271


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 156/309 (50%), Gaps = 3/309 (0%)

Query: 204 FDVLNESRDFDGMLS--LFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKK 260
           F+ L  +R   G L+  +  E++H+  + G+   +  YN +I   ++   L+ +   F++
Sbjct: 32  FNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEE 91

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           ++ S+C+ D  +YN ++++    G   +A  +++ + +     D  TY  ++ + AK G 
Sbjct: 92  MIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGD 151

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           ++   ++ +E+ +  FR     + +++   GK GRLD ++ +Y EM+  G  P A  Y  
Sbjct: 152 VERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTV 211

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++S  K  ++  A ++ +EM  AG +P    F+ +I ++AKSG+ D A   F  M  +G
Sbjct: 212 LVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESG 271

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P    Y  +L++ A S +    M LY +M   G +P    Y  LL  LAK    D   
Sbjct: 272 VKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIE 331

Query: 501 KILLEMKTM 509
            ++ +M+ +
Sbjct: 332 GVIQDMEAV 340



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 151/327 (46%), Gaps = 9/327 (2%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ+   P    Y  L    ++  + D  +++F+EM+    +  +  ++A   V     KA
Sbjct: 58  RQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKA 117

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            + E+    FK++++   + D  +YN L+  F  +G   +   + E + K     DG TY
Sbjct: 118 QEAEL---MFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITY 174

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             MI    K GRLD A+ L+ EM+     P    +  LVDS+GK  R+  + KV  EM  
Sbjct: 175 NTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMAD 234

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G +P+   + +LI +YAK+G+ D A R +D M  +G +P+   + ++++  A+S +   
Sbjct: 235 AGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRK 294

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GLRPGLSTYTALL 487
            M ++  M + G+ P    Y  LL   A   + D    +   M +   + P       + 
Sbjct: 295 LMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNP-----LVIS 349

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVD 514
           ++L K + +   A +L      GY  D
Sbjct: 350 SILIKAECISQGASLLKRACLQGYEPD 376



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 159/332 (47%), Gaps = 4/332 (1%)

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYK--AFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           D D + D  S+N L+      G      A E+   + +     D  TY  +I + ++   
Sbjct: 22  DQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSN 81

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           LD A+ +F+EM     RP    + ++V   G+ G+   +  ++ E+   G +P A  Y S
Sbjct: 82  LDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNS 141

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L+ ++AK G ++   R+ +E+  AGFR +   +  +I  + K G+LD+A+ ++ +M   G
Sbjct: 142 LLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIG 201

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY+ L++      ++  A K+   M  AGL+P L T++AL+   AK    D A 
Sbjct: 202 CTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAE 261

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           +    M   G   D  A  V++ V+ +       +   R M   G + ++ + + L  + 
Sbjct: 262 RTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAAL 321

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            K   ++  + +++  +E+  +++ ++ +S+L
Sbjct: 322 AKGNEHDEIEGVIQD-MEAVFEMNPLVISSIL 352



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 169/387 (43%), Gaps = 5/387 (1%)

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA--AIKLFQEMKER 334
           M ++   G    A ++ ++M   +   D  ++  +I + AKSG L A  A++L  E+++ 
Sbjct: 1   MGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQA 60

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
             RP    + +L+ +  +   LD ++ V+ EM     RP    Y +++  + + GK   A
Sbjct: 61  GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEA 120

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             ++ E+   GF+P+   +  ++ + AK G ++    +  ++ +AGF     TY+ ++ M
Sbjct: 121 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHM 180

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +   G++D A+ LY+ M + G  P   TYT L+  L K   +  A K+L EM   G    
Sbjct: 181 YGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPT 240

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V+ S ++  Y K G  D A R    M  SG++ +      + +   ++        L  
Sbjct: 241 LVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYR 300

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQ 633
             ++   K D  LY  +LA L +  +      ++  + A        +  +    E   Q
Sbjct: 301 AMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVISSILIKAECISQ 360

Query: 634 PVLSFVREFFHGIDYELEEGAARYFVN 660
                 R    G  YE ++G  R   +
Sbjct: 361 GASLLKRACLQG--YEPDDGPDRQLAS 385


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 170/371 (45%), Gaps = 5/371 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           ND D ++SLF    RQ+   P  E +  +   L +S+ +  +L L  +M     K  +  
Sbjct: 66  NDVDDAVSLFNCLLRQNPTPPAIE-FNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLV- 123

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
               N +I    +   +  ++  F K+L      +T ++  L+     KG  ++A   ++
Sbjct: 124 --NCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHD 181

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            +       +  +Y  +I  L K G   AA+ L + +  +  +P+  ++++++D M K  
Sbjct: 182 KLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDK 241

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            ++ +  +Y EM   G  P+   Y +LI  +   GKL  A+ L+++M     +P+   F 
Sbjct: 242 HVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFN 301

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++++   KSGK+  A+ +  +M   G  P   TYS +L+    + +VD A+ L   +   
Sbjct: 302 ILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQ 361

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHA 533
           G+RP + TYT L+  L     ++ A  I  ++   GY + V    V+   + K G  D A
Sbjct: 362 GIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEA 421

Query: 534 LRWLRFMGSSG 544
              L  M  +G
Sbjct: 422 SALLSKMEENG 432



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 104/214 (48%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           AF++Y  M     S +  TY  +I      G+L  A+ LF +M   N +P    F  LVD
Sbjct: 246 AFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVD 305

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
              K+G++  ++K+  EM   G  P+   Y S++++  K  ++D A+ L  +++  G RP
Sbjct: 306 VFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRP 365

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           N   +T++I+    SGKL+ A +IF D+   G+  T  TY  +       G  D A  L 
Sbjct: 366 NMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALL 425

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           + M   G  P   TY  +   L K+   D+A K+
Sbjct: 426 SKMEENGCIPDAKTYELIKLSLFKKGENDMAEKL 459



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 113/231 (48%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  + K   +  ++  + +++      +  +Y+ L++ F   G    A +++  M 
Sbjct: 230 YSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMI 289

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  T+ +++    KSG++  A+KL  EM +R   P+   ++S++D++ K  R+D
Sbjct: 290 SENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVD 349

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  +++  G RP+   Y  LI+    +GKL+ A  +++++ + G+      + ++ 
Sbjct: 350 KAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMF 409

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
               K G  D A ++ + ME  G +P   TY  +       G+ D A KL+
Sbjct: 410 YGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEKLH 460



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 150/345 (43%), Gaps = 3/345 (0%)

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
           S  KI+   Y+   T F +      A  ++  + +   +     +  ++ SL KS     
Sbjct: 46  SSSKINLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHT 105

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
            + L ++M+ R  +P+      L++   + G +  +  V+ ++   G+ P+   + +LI+
Sbjct: 106 VLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIK 165

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
                G++  AL   D++   GF+ N   +  +I+   K G+   A+ +   ++     P
Sbjct: 166 GLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQP 225

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT-LLAKRKLVDVAAKI 502
               YS +++       V+ A  LY+ M S G+ P + TY+AL++      KL D A  +
Sbjct: 226 NVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKD-AVDL 284

Query: 503 LLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             +M +     DV   ++L+ V+ K G + +AL+ +  M   G   N      + ++  K
Sbjct: 285 FNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCK 344

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
               + A  LL    +   + ++  YT ++  L      ++ R++
Sbjct: 345 THRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNI 389



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 123/271 (45%), Gaps = 4/271 (1%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +   L  + ++  +L L R    +    P    Y  + D + + +  +    L+ EMV  
Sbjct: 198 LIDGLCKVGETRAALDLLRRVDGK-LVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSK 256

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
                +  +SA   +I       KL+ +   F K++  + K D  ++N+L+ +F   G  
Sbjct: 257 GISPNVVTYSA---LISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKI 313

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
             A ++ + M       +  TY  ++ +L K+ R+D A+ L  ++K++  RP+ + +  L
Sbjct: 314 SYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTIL 373

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +D +  +G+L+ +  ++ ++   G+  +   Y+ +   + K G  D A  L  +M   G 
Sbjct: 374 IDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGC 433

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
            P+   + +I  S  K G+ D+A  +  + E
Sbjct: 434 IPDAKTYELIKLSLFKKGENDMAEKLHRECE 464


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 163/371 (43%), Gaps = 4/371 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AYN V+  L+ A  L  +   F  +L      +  +YN+L+     +G   +A  I   M
Sbjct: 118 AYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDM 176

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  TY  ++ +  ++G +D A +L   M +   +P+   F S+V+ M KAG++
Sbjct: 177 RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKM 236

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + KV+ EM   G  P    Y +L+  Y KAG    AL ++ EM   G  P+   FT +
Sbjct: 237 EDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSL 296

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+G L+ A+++   M   G      T++ L++     G +D A+     M    +
Sbjct: 297 IHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRI 356

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +P +  Y AL+        +D A ++L EM+  G   D V+ S ++  Y K+     A  
Sbjct: 357 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 416

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             + M   G+  +      L     +      A  L +  ++   + D   YTS++    
Sbjct: 417 LNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDG-- 474

Query: 596 RCQDEQNERHL 606
            C++   ER L
Sbjct: 475 HCKEGNVERAL 485



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 155/343 (45%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +LS+ R   R +   P    Y  L      + + DG   L   M+    K  +  F   N
Sbjct: 169 ALSILR-DMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTF---N 224

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++  + KA K+E +   F +++      D  SYN L+  +   G  ++A  ++  M + 
Sbjct: 225 SMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQK 284

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  T+  +I  + K+G L+ A+ L ++M+ER  + +   F +L+D   K G LD +
Sbjct: 285 GIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA 344

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           +     M+ C  +PS   Y +LI  Y   G++D A  L  EM   G +P+   ++ II +
Sbjct: 345 LLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 404

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K+     A  +   M   G LP   TYS L+ +     ++  A  L+ +M   GL+P 
Sbjct: 405 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPD 464

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT+L+    K   V+ A  +  +M   G   DV    VL+
Sbjct: 465 EFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLI 507



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 23/364 (6%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LS+F EM        +  F++   +I  + KA  LE +    +++ +   +++  ++  L
Sbjct: 275 LSVFAEMTQKGIMPDVVTFTS---LIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTAL 331

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  F  KG    A      M +         Y  +I      GR+D A +L  EM+ +  
Sbjct: 332 IDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGL 391

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P    +++++ +  K     ++ ++  +M   G  P A  Y SLI    +  +L  A  
Sbjct: 392 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHV 451

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+  M   G +P+   +T +I+ H K G ++ A+S+   M +AG LP   TYS L+   +
Sbjct: 452 LFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLS 511

Query: 457 SSGQVDSAMKL---------------YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            S +   A +L               Y+++     +  L +  ALL     + L++ A K
Sbjct: 512 KSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADK 571

Query: 502 ILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF----IVRQLF 556
           +   M    +++D S   VL+  + + G+V  AL + + M   G   N+     ++R LF
Sbjct: 572 VYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLF 631

Query: 557 ESCM 560
           E+ M
Sbjct: 632 ENGM 635



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 15/256 (5%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I+ L +  +L  ++  FK ++    + D  +Y  L+     +G   +A  +++ M 
Sbjct: 433 YSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMV 492

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA---- 353
           K     D  TY ++I  L+KS R   A +L  ++      P+   + +L+    KA    
Sbjct: 493 KAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKS 552

Query: 354 -----------GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
                      G ++ + KVY  M          +Y  LI  + +AG +  AL    +M 
Sbjct: 553 VLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQML 612

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             GF PN      +I    ++G +  A  +   +     L        L++++ + G VD
Sbjct: 613 QRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVD 672

Query: 463 SAMKLYNSMTSAGLRP 478
           + + + + M   GL P
Sbjct: 673 AVLDVLHGMAKDGLLP 688



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 20/231 (8%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAK-ADKLE 252
           P +  Y  L D   +  + +  LSL D+MV    K G+      Y+ +I  L+K A  +E
Sbjct: 463 PDEFTYTSLIDGHCKEGNVERALSLHDKMV----KAGVLPDVVTYSVLINGLSKSARAME 518

Query: 253 MSYCCFK----KVLDSDCKIDT----------QSYNVLMTLFLNKGLPYKAFEIYESMEK 298
                FK    + + ++ K D           +S   L+  F  KGL  +A ++Y+SM  
Sbjct: 519 AQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLD 578

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              +LDGS Y ++I    ++G +  A+   ++M +R F P+     SL+  + + G +  
Sbjct: 579 RNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVE 638

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + +V  ++  C     A    +LI+     G +D  L +   M   G  P+
Sbjct: 639 ADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPS 689


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 173/368 (47%), Gaps = 3/368 (0%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKV 261
           L+DV+  S  + G L    +++ +  + G++L   A+N +I   ++A   + ++  ++ +
Sbjct: 424 LYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIM 483

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKA-FEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +       + + N L+     KG   +A   +Y  +EKG   ++   Y +++    K   
Sbjct: 484 VRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKG-FPINKVAYTVLLDGYFKMNN 542

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L+ A  L++EMKER   P    F +L+D + KAG ++ + +V++EM   G  P+   Y S
Sbjct: 543 LEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNS 602

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI      G++  AL+L  EMR  G   +   F +II+   + G++  A+  F DM+R G
Sbjct: 603 LIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIG 662

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
            LP   T++ L+  +  +  +  A ++ N M S GL P ++TY   +    + + ++ A 
Sbjct: 663 LLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAV 722

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
            IL ++ + G   D    + ++  I    +D A+     +   G   N      L     
Sbjct: 723 IILDQLISAGIVPDTVTYNTMLSGICSDILDRAMILTAKLLKMGFIPNVITTNMLLSHFC 782

Query: 561 KNALYESA 568
           K  + E A
Sbjct: 783 KQGMPEKA 790



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 169/400 (42%), Gaps = 38/400 (9%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + YN ++    KA ++  +   ++++  +    D  ++N+L+      G    +  + + 
Sbjct: 353 AIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKD 412

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +      LD S Y++M+ SL  +GRLD A+KL QE+ E+    S   F SL+ +  +AG 
Sbjct: 413 LIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGL 472

Query: 356 LDTSMKVYMEMQGCGHRPSAPM-----------------------------------YVS 380
            D + + Y  M  CG  PS+                                     Y  
Sbjct: 473 EDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTV 532

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++ Y K   L+ A  LW EM+  G  P+   FT +I+  +K+G ++ A  +F +M   G
Sbjct: 533 LLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIG 592

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           F+P    Y+ L+      G+V  A+KL   M   GL     T+  ++    +R  +  A 
Sbjct: 593 FVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAI 652

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           +  L+M+ +G   D+   ++L+  Y K   +  A   +  M S G+  +           
Sbjct: 653 ETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGY 712

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
            +      A  +L+  + +    D V Y ++L+ +  C D
Sbjct: 713 CRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGI--CSD 750



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 158/352 (44%), Gaps = 2/352 (0%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFK 259
           V+ F++L  +    G   +  + +H   ++G+    + +  ++  L +   +  +   F 
Sbjct: 282 VVTFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFD 341

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            + D     +   YN LM  +       +A  +YE M     S D  T+ +++    K G
Sbjct: 342 GIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYG 401

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R++ + +L +++         +++  +V S+  AGRLD +MK+  E+   G   S   + 
Sbjct: 402 RIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFN 461

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SLI +Y++AG  D A   +  M   GF P+      ++    + G L  A  +   M   
Sbjct: 462 SLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEK 521

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           GF      Y+ LL+ +     ++ A  L+  M   G+ P    +TAL+  L+K   V+ A
Sbjct: 522 GFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEA 581

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNF 550
            ++ LEM  +G+  +  A + L+  + D G V  AL+  + M   G+ ++ F
Sbjct: 582 YEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTF 633



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 144/316 (45%), Gaps = 4/316 (1%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C  D  ++N+L+      G  + A +    M +       +T+  ++ +L + G +  A 
Sbjct: 278 CSPDVVTFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEAR 337

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           KLF  +++    P+  I+ +L+D   KA  +  +  +Y EM+  G  P    +  L+  +
Sbjct: 338 KLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGH 397

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K G+++ + RL  ++ ++G   +  L+ +++ S   +G+LD AM +  ++   G   + 
Sbjct: 398 YKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSV 457

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
             ++ L+  ++ +G  D A + Y  M   G  P  ST  +LL  L ++  +  A  +L  
Sbjct: 458 VAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYR 517

Query: 506 MKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           M   G+ ++  A  VL+  Y K  +++ A    + M   GI  +      L +   K   
Sbjct: 518 MLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGN 577

Query: 565 YESAKPLLETYVESAA 580
            E A    E ++E +A
Sbjct: 578 VEEA---YEVFLEMSA 590



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/403 (20%), Positives = 172/403 (42%), Gaps = 17/403 (4%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D S    ++      G    A+++ + M+    RP  +    L+  + + G   +  K++
Sbjct: 176 DFSVLNTLLRGFLNVGMGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLF 235

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +M   G RPS   + ++I  + +  ++     L   M      P+   F ++I +    
Sbjct: 236 KDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIG 295

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G+  +A+     M R+G  P+ +T++ +L      G V  A KL++ +   G+ P  + Y
Sbjct: 296 GRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIY 355

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGS 542
             L+    K + V  A+ +  EM+T G S D    ++L+  + K G ++ + R L+ +  
Sbjct: 356 NTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIV 415

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC--QDE 600
           SG+  ++ +   +  S       + A  LL+  +E    + +V + S++    R   +D+
Sbjct: 416 SGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDK 475

Query: 601 QNERHLMAI---LSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEG--AA 655
             E + + +    + +    ++ L GL      ++  +L +           LE+G    
Sbjct: 476 AFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLY---------RMLEKGFPIN 526

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHI 698
           +    VLL+    M  +  A+ +WK   E  ++P A+ F   I
Sbjct: 527 KVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALI 569



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 102/260 (39%), Gaps = 39/260 (15%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           Y +L D   +  + +G   L+ EM     + GI   + A+  +I  L+KA  +E +Y  F
Sbjct: 530 YTVLLDGYFKMNNLEGAQFLWKEM----KERGIYPDAVAFTALIDGLSKAGNVEEAYEVF 585

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++       +  +YN L+    + G   +A ++ + M +     D  T+ ++I    + 
Sbjct: 586 LEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRR 645

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G++  AI+ F +M+     P    F  L+    KA  +  + ++  +M  CG  P    Y
Sbjct: 646 GQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTY 705

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAG--------------------------------- 405
            + +  Y +  K++ A+ + D++  AG                                 
Sbjct: 706 NTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGICSDILDRAMILTAKLLKM 765

Query: 406 -FRPNFGLFTMIIESHAKSG 424
            F PN     M++    K G
Sbjct: 766 GFIPNVITTNMLLSHFCKQG 785



 Score = 39.3 bits (90), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 1/189 (0%)

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
           A +  +F +   ++      G    A+ +   M   G  P  S+ + LL +    G   S
Sbjct: 171 AMYESDFSVLNTLLRGFLNVGMGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGS 230

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM- 522
             KL+  M   G RP   T+ A++    ++  V V   +L  M     S DV   ++L+ 
Sbjct: 231 VWKLFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILIN 290

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
                G    A+ WL  M  SG+  +      +  +  +      A+ L +   +     
Sbjct: 291 ACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAP 350

Query: 583 DLVLYTSVL 591
           +  +Y +++
Sbjct: 351 NAAIYNTLM 359


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 144/300 (48%), Gaps = 2/300 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVL-DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
            +N ++  L   +K+  +   FKK++ +  C+ +   Y  +M     +G   K   +   
Sbjct: 134 TFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRI 193

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+G    D  TY ++I +L K   LDAAI L  EMK++N  P+   + SL+D + K G+
Sbjct: 194 MEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQ 253

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +    +  EM      P+   +  LI+   K GK++ A  +   M   G  P+   ++ 
Sbjct: 254 WEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSA 313

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I++ +   G++D A  +F  +   G  P   +YS L+  +     +  AM+L+  ++  G
Sbjct: 314 IMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKG 373

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHAL 534
           L+P   TY+ +L  L +   +  A KI  EM  +G + D+   S +L  Y K G V+ A+
Sbjct: 374 LKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAM 433



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 170/369 (46%), Gaps = 5/369 (1%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           ++ +LSL R  + Q    P    Y ++ D L +  + D  ++L +EM     KN      
Sbjct: 184 TEKTLSLLRIME-QGNTKPDVRTYSIVIDALCKDINLDAAINLLNEM---KQKNIPPNIF 239

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L K  + E       ++++ +   +  ++++L+     +G    A E+   M
Sbjct: 240 TYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHM 299

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D  TY  ++      G++D A ++F  ++++  +P+   ++ L++   K   L
Sbjct: 300 IEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNL 359

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +M+++ E+   G +P    Y +++    + G++  A +++DEM   G  P+  L + +
Sbjct: 360 AKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTL 419

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  + K G ++ AM +F+ +ER       S Y+ ++     + +V  A  ++  + S GL
Sbjct: 420 LFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGL 479

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALR 535
            P + TY  ++T   +  L D    IL +M+  G   +    +V+M  + +   +   + 
Sbjct: 480 IPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVS 539

Query: 536 WLRFMGSSG 544
           +++ M   G
Sbjct: 540 FMKEMAGRG 548



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/350 (20%), Positives = 157/350 (44%), Gaps = 4/350 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +++L    K+++   P    Y  L D L +   ++ + +L  EMV+ +    +  FS 
Sbjct: 220 DAAINLLNEMKQKNI-PPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSI 278

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
              +I  L K  K+E +    + +++   + D  +Y+ +M  +  +G   +A  ++  + 
Sbjct: 279 ---LIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLR 335

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +  +Y ++I    K   L  A++LF E+ ++  +P    +++++  + + GR+ 
Sbjct: 336 DKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIG 395

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + K++ EM   G  P   ++ +L+  Y K G ++ A+ L+ ++       N   +T++I
Sbjct: 396 DAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVI 455

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               K+ ++  A +IF  +   G +P   TY+ ++      G  D    +   M   G  
Sbjct: 456 NGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCP 515

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
               TY  ++    +   +      + EM   G+S D + + VL+  +K+
Sbjct: 516 ANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKE 565



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/362 (19%), Positives = 142/362 (39%), Gaps = 6/362 (1%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           LD A+ LF  M      PS   F+ L  +M         + ++ EM+  G   S  +   
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           +  SY    ++D A  +       G   N   F  ++       K+  A+ +F  + R  
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 441 FL-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
              P    Y  ++   +  G  +  + L   M     +P + TY+ ++  L K   +D A
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAA 222

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +L EMK      ++   + L+  + K G  +     L  M +  I  N      L + 
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDG 282

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQNERHLMAILSATKHKA 617
             K    E A  ++   +E   + D++ Y++++  + +R Q ++  R +  +L     K 
Sbjct: 283 LCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDR-ARRVFNVLRDKGIKP 341

Query: 618 HAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARC 677
           + F   +      +K+ +   ++ F       L+     Y  + +L+ L+ +G+I  A+ 
Sbjct: 342 NIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTY--STILHGLIEVGRIGDAKK 399

Query: 678 VW 679
           ++
Sbjct: 400 IF 401


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 171/365 (46%), Gaps = 2/365 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           +A   +I  L  A ++  +   F +  L  + K  T++YN L+  ++  G    A ++ +
Sbjct: 271 NAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLD 330

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M     + D +TY L++ +  ++GR ++A  L +EM+    +PS  +F+ ++      G
Sbjct: 331 EMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRG 390

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
               +  V  EM   G +P    Y  +I+++ K   L  A+  ++ MR  G  P+   + 
Sbjct: 391 DWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWN 450

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I++H K G+ D AM +F +M  +   P  +TY+ ++ +     +      + + M   
Sbjct: 451 TLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQ 510

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           GL P + TYT L+ +  +      A + +  MK  G     +    L+  Y + G  DHA
Sbjct: 511 GLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHA 570

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L  ++ M + G+  +  ++  L  +  ++     A  +L+   E+  + D++ YT+++  
Sbjct: 571 LNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKA 630

Query: 594 LVRCQ 598
           L+R +
Sbjct: 631 LIRIE 635



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 144/328 (43%), Gaps = 3/328 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            P +  Y +L D    +  ++    L  EM  D  K    +FS   R++         + 
Sbjct: 338 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFS---RILAGFRDRGDWQK 394

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++   +++  S  + D   YNV++  F        A + +  M +     D  T+  +I 
Sbjct: 395 AFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLID 454

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  K GR D A++LF+EM+E N  P    +  +++ +G+  R      +  EM+  G  P
Sbjct: 455 AHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVP 514

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y +L++ Y ++G+   A+   + M+  G +P+  ++  ++ ++A+ G  D A+++ 
Sbjct: 515 NIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVV 574

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G   +    + L+       +V  A  +   M    LRP + TYT L+  L + 
Sbjct: 575 KAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRI 634

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVL 521
           +  D    I  EM T G + D  A  +L
Sbjct: 635 EQFDKVPVIYEEMITSGCAPDRKARAML 662



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    K + L  +   F ++ +   + D  ++N L+      G   +A E++E M 
Sbjct: 414 YNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMR 473

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C    +TY +MI  L +  R      +  EMKE+   P+   + +LVD  G++GR  
Sbjct: 474 ESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFK 533

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +++    M+  G +PS  MY +L+ +YA+ G  D AL +   MR  G   +  +   ++
Sbjct: 534 EAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLM 593

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  +  ++  A S+   M+     P   TY+ L++      Q D    +Y  M ++G  
Sbjct: 594 NAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGCA 653

Query: 478 PGLSTYTALLTLLAKRKLVDVA 499
           P       L + L   K   VA
Sbjct: 654 PDRKARAMLRSALRYMKYTKVA 675



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 9/298 (3%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAF---EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           D  SY+ L+   LN   P  A     +   + +     D   +  +I + A++   DAA+
Sbjct: 196 DLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDLISAFARAALPDAAL 255

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIES 384
            L    +     P  N   +L+ ++G AGR+  +  +++E    G  +P    Y +L++ 
Sbjct: 256 DLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKG 315

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           Y K G L  A ++ DEM   G  P+   ++++++++ ++G+ + A  +  +ME  G  P+
Sbjct: 316 YVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPS 375

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
              +S +L      G    A  +   M ++G++P    Y  ++    K   +  A     
Sbjct: 376 SYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFN 435

Query: 505 EMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS----GIRTNNFIVRQLFE 557
            M+  G   DV   + L+  + K G  D A+     M  S    G  T N ++  L E
Sbjct: 436 RMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGE 493



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 120/272 (44%), Gaps = 5/272 (1%)

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSM-GKAGRLDTSM--KVYMEMQGCGHRPSAPMYVSL 381
           ++L   ++E  F P    ++ L+ S+       D ++  ++  +++     P AP++  L
Sbjct: 182 LRLLALIREHGFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDL 241

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I ++A+A   D AL L    +  G  P     T +I +   +G++  A ++F +   AG 
Sbjct: 242 ISAFARAALPDAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGE 301

Query: 442 L-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           + P    Y+ LL+ +   G + +A ++ + M+  G+ P  +TY+ L+    +    + A 
Sbjct: 302 IKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESAR 361

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +L EM+  G          ++   +D G    A   LR M +SG++ +      + ++ 
Sbjct: 362 ILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTF 421

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            K      A        E   + D+V + +++
Sbjct: 422 GKYNCLGHAMDAFNRMREEGIEPDVVTWNTLI 453



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 86/198 (43%), Gaps = 8/198 (4%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++ LF    R+S   PG   Y ++ ++L E   + G+ ++  EM     +  +     
Sbjct: 463 DRAMELFE-EMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEM---KEQGLVPNIIT 518

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++    ++ + + +  C + +     K     Y+ L+  +  +GL   A  + ++M 
Sbjct: 519 YTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR 578

Query: 298 KGECSLDGSTYEL--MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
                L+ ST  L  ++ +  +  R+  A  + Q MKE + RP    + +L+ ++ +  +
Sbjct: 579 AD--GLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQ 636

Query: 356 LDTSMKVYMEMQGCGHRP 373
            D    +Y EM   G  P
Sbjct: 637 FDKVPVIYEEMITSGCAP 654



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 17/209 (8%)

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKS-GKLDIAM--SIFTDMERAGFLPTPSTYSCL 451
           LRL   +R  GF P+   ++ ++ S   +    D A+   +  D+  +   P    +S L
Sbjct: 182 LRLLALIREHGFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDL 241

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM----- 506
           +   A +   D+A+ L  S  + GL P  +  TAL++ L     V  A  + LE      
Sbjct: 242 ISAFARAALPDAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGE 301

Query: 507 ---KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
              +T  Y+       +L  Y+K GS+ +A + L  M   G+  +      L ++  +  
Sbjct: 302 IKPRTRAYNA------LLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAG 355

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLA 592
            +ESA+ LL+       K    +++ +LA
Sbjct: 356 RWESARILLKEMEADGVKPSSYVFSRILA 384


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 159/342 (46%), Gaps = 4/342 (1%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F  Y  +IQ L K  +LE +     K++      D  +Y  ++     +   ++A +  E
Sbjct: 11  FVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLE 70

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M     + +  TY ++I  L K GR+D A+ L  +M+++   P+   + SL+  + KA 
Sbjct: 71  EMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAE 129

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R   +  +  EM   G  P    Y +LI  + K+ K D ALR+++++   GFRP+   ++
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAG-FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
            +I+   K G+L  A+ +F  M ++G  +P   TY+ L+      G++D AM L   M  
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE 249

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDH 532
            G  P + TYT L+    K   +D A  +L +M   G + DV     LM  + ++  +  
Sbjct: 250 TGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSD 309

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLE 573
           A+  L  M         +    + +  C  N L E+ K +LE
Sbjct: 310 AVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLE 351



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 3/298 (1%)

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           CS D  TY  +I  L K  RL+ A+    +M  + F P    + +++ ++    RL  + 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           K   EM      P+   Y  LI+   K G++D A+ L  +MR     P    +  +I   
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGL 125

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K+ +   A  +  +M  +G +P   TY+ L+     S + D A++++  + + G RP +
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSV--DVSASDVLMVYIKDGSVDHALRWLR 538
            TY+ L+  L K   +  A  +   M   G  +   V+ + ++  + + G +D A+  L 
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLE 245

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            M  +G   +      L     K A  + A  LL          D+V +TS++  L R
Sbjct: 246 RMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR 303



 Score = 95.9 bits (237), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 148/357 (41%), Gaps = 42/357 (11%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           S  +P    Y  L     +S+  D  L +F+++V    +  +  +S    +I  L K  +
Sbjct: 144 SGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC---LIDGLCKEGR 200

Query: 251 LEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           L+ +   F +++ S  C  +T +YN L++ F   G   +A  + E M +   S D  TY 
Sbjct: 201 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++    K  RLD A  L  +M  +   P    F SL+D + +  RL  ++ +  EM+  
Sbjct: 261 TLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK 320

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTA---------------------------------LR 396
              P+   Y ++++ Y +A +L+ A                                 + 
Sbjct: 321 SCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAME 380

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM-ERAGFLPTPSTYSCLLEMH 455
           L +E R     P+  ++T +I+   +  K+D A  ++  M E  G LP   TYS L+   
Sbjct: 381 LVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGL 440

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
            ++G +D A          G  P + TY  L+    K    + A ++L +M   G+ 
Sbjct: 441 CNAGMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFG 493


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 136/611 (22%), Positives = 229/611 (37%), Gaps = 123/611 (20%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESR---DFD----GMLSLFDEMVHDSS 228
           D  T+L+ F W  R+  +      +  L  +L   R   ++D     M+S  D    +  
Sbjct: 67  DPATALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMVSCSD--TAEDM 124

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           +  +    A  RV   L KA  L M            C+ +  SY +L+          +
Sbjct: 125 REAVDAIQAIRRVGGDLRKACWLLMMMPLM------GCRRNEYSYTILIQGLCETRCVRE 178

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A  +   M +  CSL+  TY L+I  L K GR+  A ++ +EM  R   PS   + +++D
Sbjct: 179 ALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMID 238

Query: 349 SMGKAGRLDTSM--KVYMEMQGC--------------------------------GHRPS 374
              K+GR+  ++  K  ME  GC                                G  P+
Sbjct: 239 GYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKPDEAEELLNDAIVRGFTPT 298

Query: 375 APMYVSLIESYAKAGKLDTALRL-----------------------------------WD 399
              + ++I  Y KA ++D ALR+                                     
Sbjct: 299 VITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVS 358

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           EM   G  PN  ++T II+ + K GK+  A+ +F  ME  G  P   TYS L+       
Sbjct: 359 EMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQ 418

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           ++  AM L   M   G+ PG+ TYT L+    K+   D A ++   M+  G + D  A +
Sbjct: 419 KLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYN 478

Query: 520 VLM---------------------------------VYIKDGSVDHALRWLRFMGSSGIR 546
           VL                                   + K G+ D A   +  M + G +
Sbjct: 479 VLTHALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCK 538

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            +++    L ++  K      A  +L+    S  K ++V YT +++ +++     + + +
Sbjct: 539 ADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSM 598

Query: 607 MAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV--NVLLN 664
              + ++ HK  A    +F     +    +  + E  H I     +G A   V  NV +N
Sbjct: 599 FNEMISSGHKPSATTYTVFISSYCK----IGQIEEAEHLIGEMERDGVAPDVVTYNVFIN 654

Query: 665 YLVLMGQINRA 675
               MG ++RA
Sbjct: 655 GCGHMGYMDRA 665



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 100/454 (22%), Positives = 180/454 (39%), Gaps = 27/454 (5%)

Query: 144 RWKWGPELETQLDKLQFVPKMVHITQALK---VINDSDTSLSLFRWAKRQSWYVPGDECY 200
           R+K   E  +++      P +V  T  +     +     +L +FR  + +    P    Y
Sbjct: 349 RFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCR-PNAWTY 407

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
             L   L + +     ++L  +M  D    G+     Y  +IQ   K  + + ++  F+ 
Sbjct: 408 SSLIYGLIQDQKLHKAMALITKMQEDGITPGVI---TYTTLIQGQCKKHEFDNAFRLFEM 464

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +  +    D Q+YNVL       G   +A E Y  + +    L   TY  ++   +K+G 
Sbjct: 465 MEQNGLTPDEQAYNVLTHALCKSG---RAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGN 521

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
            D A  L ++M     +     ++ L+ ++ K  +L+ ++ +  +M   G + +   Y  
Sbjct: 522 TDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTI 581

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           +I    K GK D A  +++EM  +G +P+   +T+ I S+ K G+++ A  +  +MER G
Sbjct: 582 IISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDG 641

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV---- 496
             P   TY+  +      G +D A      M  A   P   TY  LL    K  LV    
Sbjct: 642 VAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHY 701

Query: 497 ------------DVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSS 543
                       D   ++L  M   G +   V+ S ++  + K   ++ A      M   
Sbjct: 702 VDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGK 761

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
            I  N  I   L + C    L+  A   +   +E
Sbjct: 762 DISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIE 795


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 192/399 (48%), Gaps = 5/399 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ + L +   FD  L +++ M  +  +    +F+ Y+ +I  L +A  ++ +   +K
Sbjct: 260 YNIMINGLCKCGRFDESLEIWERMTKNEREK--DMFT-YSSLIHGLCEAGNIDGAVRVYK 316

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++++S   +D  ++N ++  F   G   ++FE++  M K  C    S Y ++I  L ++G
Sbjct: 317 EIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVS-YNILIKGLFENG 375

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +++ AI +++ + ++  RP    +  L+  + K GRL+ ++K++ E +    +  A  Y 
Sbjct: 376 KVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYS 435

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           S+++   K G++D A+ + ++M   G++ +  +   +I    ++ KL+ A++ F +ME  
Sbjct: 436 SMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECK 495

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  PT  +Y+ L++    + +   A      M     +P + T + L+  L + K +++A
Sbjct: 496 GCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMA 555

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +  +    G+  D++  ++LM  +     ++ AL+    M  S    N      L E 
Sbjct: 556 LNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEG 615

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             K   YE A  + +  ++     D++ Y   +  L  C
Sbjct: 616 LYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSC 654



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 147/335 (43%), Gaps = 7/335 (2%)

Query: 266 CKIDTQSYNVLMTLF--LNKGLPYKAFEIY-ESMEKGECSLDGSTYELMIPSLAKSGRLD 322
           CK   +SYN L+  F  LN+    ++F  Y ESM   + S +  TY ++I    K  +++
Sbjct: 112 CKPGVRSYNTLLNAFVELNEWDRAESFSRYFESM---DVSPNLQTYNILIKISCKKQQIE 168

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            AI L   M  +N +P    + +L++ M K G L  ++KV+ EM   G       Y  LI
Sbjct: 169 KAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLI 228

Query: 383 ESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           + + K G  D    +W+ + +     PN   + ++I    K G+ D ++ I+  M +   
Sbjct: 229 DGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNER 288

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
                TYS L+     +G +D A+++Y  +  + L     T+ A+L    +   +  + +
Sbjct: 289 EKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFE 348

Query: 502 ILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
           + + M        VS + ++    ++G V+ A+     +   G R  +     L     K
Sbjct: 349 LWMVMGKENCQTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCK 408

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           N     A  + +   +   K+D   Y+S++  L +
Sbjct: 409 NGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCK 443



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 97/477 (20%), Positives = 190/477 (39%), Gaps = 64/477 (13%)

Query: 161 VPKMVHITQALKVINDSDTSLSLFR-WAKRQSWYVPGDECYVMLFDVLNESRD-FDGMLS 218
           V ++V I +A K     D +L++ + +AK +               + N++ D F  M  
Sbjct: 64  VSRIVDIVKAQKCPCKEDVALTVIKAYAKNK---------------MSNKALDTFQNMQD 108

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYNVLM 277
           +F        K G+  ++        L + D+ E     F +  +S D   + Q+YN+L+
Sbjct: 109 IF------GCKPGVRSYNTLLNAFVELNEWDRAES----FSRYFESMDVSPNLQTYNILI 158

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
            +   K    KA  + + M       D  +Y  +I  + K G L  A+K+F EM  R   
Sbjct: 159 KISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVV 218

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
                +  L+D   K G  D   +++  + + C   P+   Y  +I    K G+ D +L 
Sbjct: 219 ADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLE 278

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME------------------- 437
           +W+ M       +   ++ +I    ++G +D A+ ++ ++                    
Sbjct: 279 IWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFC 338

Query: 438 RAGFLP---------------TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           RAG +                T  +Y+ L++    +G+V+ A+ ++  +   G RP  +T
Sbjct: 339 RAGKIKESFELWMVMGKENCQTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTT 398

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMG 541
           Y  L+  L K   ++ A KI  E +     +D  A S ++    K+G +D A+  +  M 
Sbjct: 399 YGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMD 458

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
             G + +  +   L    ++ +  E A               +V Y +++  L + +
Sbjct: 459 KRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAE 515



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 110/251 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AY+ ++  L K  +++ +     ++     K+D    N L+  F+       A   +  M
Sbjct: 433 AYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREM 492

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E   CS    +Y  +I  L K+ R   A    +EM E+ ++P     + L+D + +  ++
Sbjct: 493 ECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKI 552

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + ++ ++ +    G +P   MY  L+       KL+ AL+L+  M+ +   PN      +
Sbjct: 553 EMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTL 612

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +E   K    + A  I+  + + G  P   +Y+  ++   S  ++  A++  N   + G+
Sbjct: 613 MEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGI 672

Query: 477 RPGLSTYTALL 487
            P   T+  L+
Sbjct: 673 LPTAVTWNILV 683


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 131/254 (51%)

Query: 269  DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
            D  +YN LM      G    A +++ES+      L+  +Y ++I    K  ++D A + F
Sbjct: 1224 DILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFF 1283

Query: 329  QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +EM+ +  +PS   + +L+ ++ ++GR+ T+ K+++EMQ CG       Y  L++   K 
Sbjct: 1284 EEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 1343

Query: 389  GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            G L+ A+ L+  ++    +PN  +F+++++   ++GKL+ A   F ++ + G  P    Y
Sbjct: 1344 GHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAY 1403

Query: 449  SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
            + L+    + G +  A+KL   M   G  P   T+  ++  L K   +  A ++L EM+ 
Sbjct: 1404 NILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRN 1463

Query: 509  MGYSVDVSASDVLM 522
              +S D + + +L+
Sbjct: 1464 RNFSPDEAVTSMLL 1477



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 196/455 (43%), Gaps = 17/455 (3%)

Query: 157  KLQFVPKMVHITQALKVI---NDSDTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRD 212
            K  F P  V +T  +K +   N    ++ LF    ++   + GD + Y +L + L ++R 
Sbjct: 1009 KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKG--LLGDAKTYGILINGLCKARK 1066

Query: 213  FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
                + L ++M  +   +  +    Y  +I  L K      +   F +++ +    D   
Sbjct: 1067 TGLAIKLHEKMKGNCKGDVFT----YGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVV 1122

Query: 273  YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
            Y+ LM      G   +A E ++ ME    S D  TY  +I  L+++G           M 
Sbjct: 1123 YSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMV 1182

Query: 333  ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
            +R F P    F  L+D + K G++  + ++   M+  G  P    Y +L+      G+L+
Sbjct: 1183 DRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLE 1242

Query: 393  TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             A +L++ +   G + N   + ++I  + K  K+D A   F +M   G  P+  TY+ L+
Sbjct: 1243 DATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLI 1302

Query: 453  EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
                 SG+V +A KL+  M + G    LSTY  LL  L K   ++ A  +   +K   + 
Sbjct: 1303 GALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHK 1362

Query: 513  VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKP 570
             ++    +L+    + G ++ A +    +  +G+  +      L    C K  L E+ K 
Sbjct: 1363 PNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVK- 1421

Query: 571  LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
            LL    E     D + +  ++ +L++    +NE H
Sbjct: 1422 LLWQMEEKGCLPDSITFNVIIQNLLK----ENEIH 1452



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 135/297 (45%), Gaps = 3/297 (1%)

Query: 193  YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
            + P    + +L D L +         + + M H   +  I     YN ++  L    +LE
Sbjct: 1186 FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDIL---TYNTLMNGLCLVGQLE 1242

Query: 253  MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
             +   F+ + D   K++  SYN+L+  +       +AF  +E M          TY  +I
Sbjct: 1243 DATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLI 1302

Query: 313  PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             +L +SGR+  A KLF EM+        + +  L+D + K G L+ +M ++  ++   H+
Sbjct: 1303 GALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHK 1362

Query: 373  PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
            P+  ++  L++   +AGKL+ A + +DE+   G  P+   + ++I      G L  A+ +
Sbjct: 1363 PNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKL 1422

Query: 433  FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
               ME  G LP   T++ +++      ++  A++L   M +    P  +  + LL L
Sbjct: 1423 LWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCL 1479



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 128/271 (47%), Gaps = 1/271 (0%)

Query: 196  GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMS 254
            G E  ++ ++ L       G L    ++    +  GI L   +YN +I    K  K++ +
Sbjct: 1220 GKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEA 1279

Query: 255  YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
            +  F+++     K  T +YN L+      G    A +++  M+     L  STY +++  
Sbjct: 1280 FRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDG 1339

Query: 315  LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            L K+G L+ A+ LFQ +K+   +P+  +F+ L+D M +AG+L+ + K + E+   G  P 
Sbjct: 1340 LCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPD 1399

Query: 375  APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
               Y  LI      G L  A++L  +M   G  P+   F +II++  K  ++  A+ +  
Sbjct: 1400 TIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLE 1459

Query: 435  DMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +M    F P  +  S LL + +   Q  +A+
Sbjct: 1460 EMRNRNFSPDEAVTSMLLCLASFDPQWHAAL 1490



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 93/242 (38%)

Query: 355  RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            +L+ ++K++         P    +  L+ S AK G   T   ++ ++   G +P+     
Sbjct: 926  KLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLN 985

Query: 415  MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++I        +     +F    + GF P   T + L++       +  A++L++ MT  
Sbjct: 986  ILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKK 1045

Query: 475  GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534
            GL     TY  L+  L K +   +A K+  +MK        +   ++    KDG    AL
Sbjct: 1046 GLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTEAL 1105

Query: 535  RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                 M  +GI  +  +   L +   +    + A    +         D+  Y S++  L
Sbjct: 1106 DMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGL 1165

Query: 595  VR 596
             R
Sbjct: 1166 SR 1167


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 180/390 (46%), Gaps = 19/390 (4%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +   L+ I     +  +F+WA RQ  +      Y    + L +         +FD+M++ 
Sbjct: 7   VIHVLENIKSPKLASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYK 66

Query: 227 SSKNGISLFSAYNRVIQYLAKADK-LEMSYCCFKKVLDSDCKIDTQS---YNVLMTLFLN 282
                I  +    R +   AK D  LE+       + D + K+ T +    N+L++    
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALEL-------LQDMESKMLTPTTFIVNMLVSCLCK 119

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
            G    A+E+Y+ +   ECSLD  +Y ++   L K+ ++D A+ +F EM+E    PS   
Sbjct: 120 NGKVDAAYELYKRLSD-ECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLT 178

Query: 343 FASLVDSMGKAGRLDTSMKVYMEM----QGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +  L+    +AGR++ +M +  EM    +G    P    Y ++I  + KA +L TA  + 
Sbjct: 179 YNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVL 238

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M  +G  PN   F  +++    +GKLD A ++F  M      PT  TY+ L+  HA +
Sbjct: 239 RRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARA 298

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSA 517
            ++D A   +  M   G+ P + TYTAL+  L     V+ A +IL  M + G   + V+ 
Sbjct: 299 LRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTY 358

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
           + V+    K G ++ A +   F  + G RT
Sbjct: 359 TRVIGALCKGGQIERATKL--FNDAMGSRT 386


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 163/339 (48%), Gaps = 7/339 (2%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           +++++    +++  S+N+++      G   +A ++ E M+    S +  TY  +I    K
Sbjct: 143 YREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCK 202

Query: 318 SGRLDAAIK---LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            GR+    K   + +EM  +   P+   +  L+D   K   +  +M+V+ EMQ  G RP+
Sbjct: 203 MGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPN 262

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI      GK+D A+ L D+M  +   PN     ++I    K+  ++ A+++F 
Sbjct: 263 VVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFN 322

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           DME+ G  P   TY+ L++ +   G+++ A  LYN M   G+ P +STY  L+  L ++ 
Sbjct: 323 DMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKG 382

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            V  A  ++ EM +   S DV   ++L+  + K G    A++ L  M   G+  ++    
Sbjct: 383 DVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYN 442

Query: 554 QLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            L +  C +  L   A  ++ T +E   K   V+  +VL
Sbjct: 443 TLMDGYCREGNL--RAALIVRTRMERKGKQANVVTHNVL 479



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 3/289 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y +L D   +  +  G + +F EM     +  +     YN +I  L    K++ +
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVV---TYNILINGLCSDGKVDEA 282

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                +++ SD + +  ++NVL+  F       +A  ++  MEK     +  TY  +I +
Sbjct: 283 VALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDA 342

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K GR++ A  L+  M +R   P  + +  L+  + + G +  +  +  EM        
Sbjct: 343 YCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSAD 402

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI+S  K G+   A++L DEM   G  P+   +  +++ + + G L  A+ + T
Sbjct: 403 VVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRT 462

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
            MER G      T++ L++     G+++ A  L N M   GL P  +TY
Sbjct: 463 RMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTY 511



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 113/251 (45%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN+L+  F        A  ++  M++     +  TY ++I  L   G++D A+ L  +M
Sbjct: 230 TYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQM 289

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
              +  P+      L++   K   ++ ++ ++ +M+  G  P+A  Y +LI++Y K G++
Sbjct: 290 VSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRM 349

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A  L++ M   G  P    +  +I    + G +  A S+  +M          TY+ L
Sbjct: 350 EDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNIL 409

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++     G+   A+KL + M   GL P   TY  L+    +   +  A  +   M+  G 
Sbjct: 410 IDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGK 469

Query: 512 SVDVSASDVLM 522
             +V   +VL+
Sbjct: 470 QANVVTHNVLI 480



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 5/209 (2%)

Query: 217 LSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           ++LF++M     K G+   +  Y  +I    K  ++E ++  +  ++D     +  +YN 
Sbjct: 318 INLFNDM----EKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNC 373

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+     KG    A  +   M   + S D  TY ++I SL K G    A+KL  EM E+ 
Sbjct: 374 LIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKG 433

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             PS   + +L+D   + G L  ++ V   M+  G + +   +  LI+ +   G+L+ A 
Sbjct: 434 LNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDAN 493

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
            L +EM   G  PN   + +I E   + G
Sbjct: 494 GLLNEMLERGLVPNRTTYEIIKEEMMEKG 522


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 157/343 (45%), Gaps = 40/343 (11%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           S   FRWA     +      Y  +  +L ++R F+ M++L  EM     K G     A+ 
Sbjct: 209 SYRFFRWATASGGFTHTTITYCKMLLILGKTRQFESMVALLQEM----GKAGTLSMDAFK 264

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
             I+  A A +++ +   F+ +  +      +S+N L+    N+GL  +A ++++ M  G
Sbjct: 265 VAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALANEGLGREARQVFDKM-LG 323

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
           + S D  +Y  ++ +   +  L  A +++ EM E+                         
Sbjct: 324 QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEK------------------------- 358

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
                     G +P   ++ ++IE   +  +   A+++++ M+  G  PN   +TM+I +
Sbjct: 359 ----------GMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYTMLICN 408

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           H K GK+D+AM  F +M+ A   P  +TY+CLL  + ++ ++D    +   MT  G  P 
Sbjct: 409 HCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPD 468

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TY AL+ LL  RK+ D AA+I  +M   G    +   +++M
Sbjct: 469 ARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMM 511



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 15/282 (5%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY  M+  L K+ + ++ + L QEM +     S + F   + S   AG +  ++ V+  M
Sbjct: 228 TYCKMLLILGKTRQFESMVALLQEMGKAGTL-SMDAFKVAIKSFAAAGEIKNAVGVFELM 286

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G       +  L+ + A  G    A +++D+M +  + P+   +T ++ +   +  L
Sbjct: 287 RKNGFDDGVESFNCLLVALANEGLGREARQVFDKM-LGQYSPDLRSYTALMLAWCNARNL 345

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A  ++ +M   G  P    ++ ++E      +   A+K++  M + G  P + TYT L
Sbjct: 346 VEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYTML 405

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGI 545
           +    KR  +D+A +   EM+      DV+    L+V Y     +D     L  M   G 
Sbjct: 406 ICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGC 465

Query: 546 ----RTNNFIVRQLFESCM--------KNALYESAKPLLETY 575
               RT N +++ L    M        K  + +   P + TY
Sbjct: 466 PPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTY 507



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 4/207 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ML     +    D  +  F+EM     +  ++ ++    ++ Y   A +++      +
Sbjct: 402 YTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCL--LVGY-GNAKRMDRVTAVLE 458

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++    C  D ++YN L+ L  N+ +P  A  IY+ M K        TY +M+ S     
Sbjct: 459 EMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFLGD 518

Query: 320 RLDA-AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           R  A    +++EM  R   P  N +   +    + GR + + K   EM   G +      
Sbjct: 519 RNYAMGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMINKGMKAPQIDC 578

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAG 405
                  +KAGKLD    L  +++ AG
Sbjct: 579 NKFAADLSKAGKLDMLYELAQKVKFAG 605


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 156/336 (46%), Gaps = 1/336 (0%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
             ++ +   K D+Q+Y+  +    N     +A E+  SM       D  TY   I + AK
Sbjct: 174 LDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAK 233

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
             R   A+ L + MK +  +P+  ++++ + +  K G+ +T++ +  EM   G  P    
Sbjct: 234 VSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVIT 293

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y ++I++ AK G+ + A RL  EM   G   N   ++++I + AK G+ + A+++  +M+
Sbjct: 294 YSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQ 353

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   TYS  +   A  GQ + A+ L   M   G+ P   +Y  +++  AKR    
Sbjct: 354 ENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWR 413

Query: 498 VAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  +L EM+  G   DV + S  +    +    + AL  LR M ++G+  N        
Sbjct: 414 EAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAI 473

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           ++C K    + A  LL          D++ Y++V+A
Sbjct: 474 DACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIA 509



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 155/355 (43%), Gaps = 1/355 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ VI   AK  + E ++    ++       +  +Y++++      G   +A  +   M+
Sbjct: 294 YSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQ 353

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +   + D  TY   I + AK G+ + A+ L +EM      P+   +  ++ +  K GR  
Sbjct: 354 ENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWR 413

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  EMQ  G  P    Y + I++ A+A + + AL L  EM   G  PN   +   I
Sbjct: 414 EAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAI 473

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           ++ AK+G+  IA+ +  +M   G  P   TYS ++   A   Q + A+ L+  M   G+ 
Sbjct: 474 DACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGIT 533

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P + +    +   A+    + A  +L EM TMG   D +S    +    K       +  
Sbjct: 534 PDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDL 593

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           LR M + G+  +    R    +C  + L++ A  LL   +      D+V Y S +
Sbjct: 594 LREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAI 648



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 158/351 (45%), Gaps = 1/351 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+  I    K  + E +    K++       D  +Y+ ++     +G    AF +   M 
Sbjct: 259 YSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMP 318

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +  TY ++I + AK G+ + A+ L +EM+E    P    ++S + +  K G+ +
Sbjct: 319 TKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWE 378

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  EM   G  P+A  Y  +I + AK G+   A+ L  EM+  G  P+   ++  I
Sbjct: 379 EAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAI 438

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           ++ A++ + + A+ +  +M   G  P   +Y+  ++  A +G+   A++L   M + GL 
Sbjct: 439 DACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLA 498

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P + TY+A++   A  +  + A  +  EM+  G + D VS +  +    + G  + AL  
Sbjct: 499 PDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDV 558

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           L  M + G+  +    R   ++C K   ++    LL          D + Y
Sbjct: 559 LGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISY 609



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 141/305 (46%), Gaps = 1/305 (0%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           KA ++ + M++     D   Y   I +   + + + A++L   M  R   P    ++S +
Sbjct: 169 KALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAI 228

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
            +  K  R   ++ +   M+G G +P+  +Y + I +  K G+ +TA+ L  EM   G  
Sbjct: 229 AACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLA 288

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+   ++ +I++ AK G+ + A  +  +M   G +    TYS ++   A  GQ + A+ L
Sbjct: 289 PDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVAL 348

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIK 526
              M   G+ P + TY++ ++  AK+   + A  +L EM   G + + +S   V+    K
Sbjct: 349 LREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAK 408

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
            G    A+  L+ M + G+  +        ++C + + +E A  LL     +    +++ 
Sbjct: 409 RGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVIS 468

Query: 587 YTSVL 591
           Y S +
Sbjct: 469 YNSAI 473



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 115/275 (41%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+  I   A+A + E +    +++  +    +  SYN  +      G    A E+   M 
Sbjct: 434 YSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMP 493

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + D  TY  +I S A   + + A+ LF+EM+ +   P      + +++  + G  +
Sbjct: 494 AHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWE 553

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ V  EM   G  P A  Y + I++ AK  +    + L  EM   G  P+   +   +
Sbjct: 554 EALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAM 613

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            + +  G    A+ +  DM   G  P   TY+  +   A  G+   A  L   M + GL 
Sbjct: 614 SACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLA 673

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           P ++++ A +           A ++L EM+ +G S
Sbjct: 674 PDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVS 708



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 146/365 (40%), Gaps = 40/365 (10%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y ++     +   ++  ++L  EM     +NG++     Y+  I   AK  + E +    
Sbjct: 329 YSIVIGACAKWGQWEEAVALLREM----QENGVAPDVITYSSTISACAKKGQWEEAVGLL 384

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +++       +  SY ++++    +G   +A ++ + M+      D   Y   I + A++
Sbjct: 385 REMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQA 444

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
            R + A+ L +EM      P+   + S +D+  K GR   ++++  EM   G  P    Y
Sbjct: 445 SRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITY 504

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            ++I S A   + + AL L+ EM+  G  P+       I + A+ G  + A+ +  +M  
Sbjct: 505 SAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPT 564

Query: 439 AGFLP---------------------------------TPSTYSCLLEMHASS--GQVDS 463
            G +P                                 TP   S    M A S  G    
Sbjct: 565 MGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKE 624

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523
           A+ L   M + GL P + TY + +   AK      A  +L +M T G + DV++ +  + 
Sbjct: 625 ALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAID 684

Query: 524 YIKDG 528
              +G
Sbjct: 685 ACGNG 689



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 66/156 (42%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y   I   AK D+ +      +++       D  SY   M+     GL  +A  +   M
Sbjct: 573 SYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDM 632

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY   I + AK GR   A  L ++M      P  N F + +D+ G   + 
Sbjct: 633 LAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGNGDQW 692

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
            T+++V  EM+  G  P+   Y++ + +  + G+ D
Sbjct: 693 GTAVEVLFEMRALGVSPNEATYLTAMYACKRCGEKD 728



 Score = 42.4 bits (98), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 55/308 (17%), Positives = 107/308 (34%), Gaps = 9/308 (2%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKV---INDSDTS 180
           G+    +N SA        +RW+    L  ++      P ++    A+        S  +
Sbjct: 426 GVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIA 485

Query: 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYN 239
           + L R         P    Y  +       R ++  L LF EM     + GI+    + N
Sbjct: 486 VELLREMPAHG-LAPDVITYSAVIASCAMGRQWEEALDLFREM----QRQGITPDVVSCN 540

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
             I   A+    E +     ++       D  SY   +          +  ++   M   
Sbjct: 541 TAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTV 600

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             + D  +Y   + + +  G    A+ L ++M      P    + S +++  K GR   +
Sbjct: 601 GLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEA 660

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             +  +M   G  P    + + I++     +  TA+ +  EMR  G  PN   +   + +
Sbjct: 661 TVLLRQMPTFGLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYA 720

Query: 420 HAKSGKLD 427
             + G+ D
Sbjct: 721 CKRCGEKD 728


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 173/366 (47%), Gaps = 18/366 (4%)

Query: 210 SRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
            ++ + ML L D+MV +    N ++    Y  V+  + K+ +  ++    +K+ + + K+
Sbjct: 207 GKEAEAML-LIDKMVEYGCQPNAVT----YGPVLNVMCKSGQTALAMELLRKMEERNIKL 261

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   Y++++      G    AF ++  ME    + +  TY ++I     +GR D   KL 
Sbjct: 262 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 321

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           ++M +R   P+   F+ L+DS  K G+L  + +++ EM   G  P    Y SLI+ + K 
Sbjct: 322 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 381

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
             LD A ++ D M   G  PN   F ++I  + K+ ++D  + +F  M   G +    TY
Sbjct: 382 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTY 441

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++     G+++ A +L+  M S  + P + TY  LL  L      + A +I  +++ 
Sbjct: 442 NTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 501

Query: 509 MGYSVDVSASDVLMVYIKDGS-VDHALRWLRFMG------SSGIRTNNFIVRQLFESCMK 561
               +D+   ++++  + + S VD A  W  F          G++T N ++  L   C K
Sbjct: 502 SKMELDIGIYNIIIHGMCNASKVDDA--WDLFCSLPLKGVKPGVKTYNIMIGGL---CKK 556

Query: 562 NALYES 567
             L E+
Sbjct: 557 GPLSEA 562



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/431 (22%), Positives = 192/431 (44%), Gaps = 7/431 (1%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           +D ++ LFR     S  +P    +  LF  + +++ +D +L+L  +M      + +   S
Sbjct: 69  ADDAIDLFR-DMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 127

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
               +I    +  KL +++    K++    + +T +++ L+     +G   +A E+ + M
Sbjct: 128 I---MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 184

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D  T   ++  L  SG+   A+ L  +M E   +P+   +  +++ M K+G+ 
Sbjct: 185 VEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 244

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +M++  +M+    +  A  Y  +I+   K G LD A  L++EM + G   N   + ++
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNIL 304

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I     +G+ D    +  DM +    P   T+S L++     G++  A +L+  M   G+
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 364

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P   TYT+L+    K   +D A +++  M + G   ++   ++L+  Y K   +D  L 
Sbjct: 365 APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLE 424

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             R M   G+  +      L +   +      AK L +  V      ++V Y  +L  L 
Sbjct: 425 LFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL- 483

Query: 596 RCQDEQNERHL 606
            C + ++E+ L
Sbjct: 484 -CDNGESEKAL 493



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 166/359 (46%), Gaps = 4/359 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D L +    D   +LF+EM     K   +    YN +I     A + +      +
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEM---EMKGITTNIITYNILIGGFCNAGRWDDGAKLLR 322

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++      +  +++VL+  F+ +G   +A E+++ M     + D  TY  +I    K  
Sbjct: 323 DMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKEN 382

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            LD A ++   M  +   P+   F  L++   KA R+D  ++++ +M   G       Y 
Sbjct: 383 HLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYN 442

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI+ + + GKL+ A  L+ EM      PN   + ++++    +G+ + A+ IF  +E++
Sbjct: 443 TLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKS 502

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
                   Y+ ++    ++ +VD A  L+ S+   G++PG+ TY  ++  L K+  +  A
Sbjct: 503 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 562

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
             +  +M+  G++ D    ++L+  ++ DG    +++ +  +   G   +   ++ + +
Sbjct: 563 ELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 107/271 (39%), Gaps = 16/271 (5%)

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F    +RN      + + LVD      + D ++ ++ +M      P+   +  L  + AK
Sbjct: 46  FSAFSDRNLSYRERLRSGLVDI-----KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAK 100

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
             + D  L L  +M + G   N    +++I    +  KL +A S    + + G+ P   T
Sbjct: 101 TKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTIT 160

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL---LTLLAKRKLVDVAAKILL 504
           +S L+      G+V  A++L + M   G +P L T   L   L L  K      A  +LL
Sbjct: 161 FSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKE-----AEAMLL 215

Query: 505 EMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             K + Y      V+   VL V  K G    A+  LR M    I+ +      + +   K
Sbjct: 216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           +   ++A  L           +++ Y  ++ 
Sbjct: 276 HGSLDNAFNLFNEMEMKGITTNIITYNILIG 306


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +     RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 95/211 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +   +M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 185/425 (43%), Gaps = 7/425 (1%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           INDS ++ +LF+ AK +   + G     +++  +  +    G +   +E+V +  ++GI 
Sbjct: 347 INDSQSADNLFKEAKTKLSSLNG-----IIYSNIIHAHCQSGNMERAEELVREMEEDGID 401

Query: 234 L-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
                Y+ ++               F+++ +   K    SY  L+ L++  G   KA  I
Sbjct: 402 APIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSI 461

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            + ME      +  TY ++I           A  +F+EM     +P   I+  L+++  K
Sbjct: 462 SKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCK 521

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G +D ++ +  +MQ    +PS   +  +IE YA AG + +AL   D MR +G  P    
Sbjct: 522 MGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMT 581

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  +I    +  K+  A+S+   M  AG  P   TY+ ++  +A+SG +  A + +  + 
Sbjct: 582 YNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 641

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
            +GL+  +  Y  LL    K   +  A  +  EM       +    ++L+  + + G V 
Sbjct: 642 ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVW 701

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   ++ M   G+  N         +C K    + A+ ++E  V+   K ++  YT+++
Sbjct: 702 EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLI 761

Query: 592 AHLVR 596
               R
Sbjct: 762 KGWAR 766



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 164/361 (45%), Gaps = 6/361 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           +RD  G LS  +EM       G+ L    Y+ +I   AK +  + +   FK+       +
Sbjct: 312 ARDMRGALSCVEEM----KSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSL 367

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +   Y+ ++      G   +A E+   ME+         Y  M+         +  + +F
Sbjct: 368 NGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVF 427

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           + +KE  F+PS   +  L++   K G++  ++ +  EM+ CG + +   Y  LI  +   
Sbjct: 428 ERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHL 487

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
                A  +++EM  +G +P+  ++ ++IE+  K G +D A+ I   M++    P+   +
Sbjct: 488 HDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAF 547

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             ++E +A +G + SA+   + M  +G  P + TY AL+  L ++  V  A  +L +M  
Sbjct: 548 RPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSI 607

Query: 509 MGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G + +     ++M  Y   G +  A  +   +  SG++ + +I   L  +C K+   +S
Sbjct: 608 AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQS 667

Query: 568 A 568
           A
Sbjct: 668 A 668



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 162/360 (45%), Gaps = 1/360 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  ++    K  K+  +    K++     K + ++Y++L+  F++      AF I+E M
Sbjct: 441 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 500

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D + Y L+I +  K G +D AI + ++M++   +PS   F  +++    AG +
Sbjct: 501 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDM 560

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            +++     M+  G  P+   Y +LI    +  K+  A+ + D+M IAG  PN   +T+I
Sbjct: 561 KSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTII 620

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  +A SG +  A   FT ++ +G       Y  LL     SG++ SA+ +   M+   +
Sbjct: 621 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 680

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
                 Y  L+   A+R  V  A  ++ +MK  G   ++ + +  +    K G +  A +
Sbjct: 681 PRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEK 740

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            +  M   G++ N      L +   + +L + A    E    +  K D   Y  ++  L+
Sbjct: 741 VIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLL 800



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 145/336 (43%), Gaps = 40/336 (11%)

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSY 255
           ++ Y ML +      DF    ++F+EM+    ++G+    A YN +I+   K   ++ + 
Sbjct: 474 NKTYSMLINGFIHLHDFANAFAIFEEML----RSGLQPDRAIYNLLIEAFCKMGNMDRAI 529

Query: 256 CCFKKV-------------------------------LD----SDCKIDTQSYNVLMTLF 280
           C  +K+                               LD    S C     +YN L+   
Sbjct: 530 CILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGL 589

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
           + K    +A  + + M     + +  TY +++   A SG +  A + F ++KE   +   
Sbjct: 590 VRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 649

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
            I+ +L+ +  K+GR+ +++ V  EM       +  +Y  LI+ +A+ G +  A  L  +
Sbjct: 650 YIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQ 709

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M+  G  PN   +T  I +  K+G +  A  +  +M   G  P   TY+ L++  A    
Sbjct: 710 MKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSL 769

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            D A+K +  M  AGL+P  ++Y  L+T L  R  V
Sbjct: 770 PDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATV 805



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/360 (18%), Positives = 153/360 (42%), Gaps = 7/360 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           + RV++  ++ D  +     F+++     K   + + +++  +  +G  + A   +E+M 
Sbjct: 238 FRRVVE--SRPDNWQAVVSAFERIP----KPSRREFGLMIVYYAKRGDKHHARATFENMR 291

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +   +  ++ + A +  +  A+   +EMK      +   ++ L+    K     
Sbjct: 292 ARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQ 351

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           ++  ++ E +      +  +Y ++I ++ ++G ++ A  L  EM   G      ++  ++
Sbjct: 352 SADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMM 411

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             +      +  + +F  ++  GF P+  +Y CLL ++   G+V  A+ +   M S G++
Sbjct: 412 HGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIK 471

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
               TY+ L+           A  I  EM   G   D +  ++L+  + K G++D A+  
Sbjct: 472 HNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICI 531

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M    ++ +N   R + E        +SA   L+    S     ++ Y +++  LVR
Sbjct: 532 LEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVR 591


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 153/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTREHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      GQ   A K+   M S GL+P 
Sbjct: 327 CCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 387 ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 71  DLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTF 250

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSM 310

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    KDG +D A    + M     R ++ +   L     +      
Sbjct: 311 KGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVD 370

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 371 AEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 147/323 (45%), Gaps = 4/323 (1%)

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           I+E+  KG    D   +  +I +  +SG L  AI+ ++  +E  F   F+    +++ + 
Sbjct: 61  IFET--KGTQRSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLM 118

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K          Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+  
Sbjct: 119 KLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVV 178

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +  ++  + + G LD    + + M  +G  P   TYS L+       ++D A +L++ M
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEM 238

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSV 530
              GL P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +
Sbjct: 239 LVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL 298

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
             A   +  M   G++ +      L + C K+   ++A    +  ++   ++D V+YT++
Sbjct: 299 KQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTAL 358

Query: 591 LAHLVR-CQDEQNERHLMAILSA 612
           ++ L R  Q    E+ L  +LS 
Sbjct: 359 ISGLCREGQSVDAEKMLREMLSV 381



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 140/311 (45%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFD 166

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 226

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P++  + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 227 KIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYN 286

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +D+A +    M   
Sbjct: 287 TLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQE 346

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHA 533
             R     YTAL++ L +      A K+L EM ++G   D  + + ++  + K G V   
Sbjct: 347 NTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKG 406

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 407 SKLLKEMQRDG 417


>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
          Length = 701

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/509 (21%), Positives = 227/509 (44%), Gaps = 48/509 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K   L+ +   F ++L+   K D  +++ +++      LP KA E +E M 
Sbjct: 179 YNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMP 238

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  D  TY  MI +  ++G +D A+KL+   +   +R     F++L+   G +G  D
Sbjct: 239 EFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFD 298

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + VY EM+  G +P+  +Y +L+++  +A +   A  ++ EM   G + ++G +  ++
Sbjct: 299 GCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALL 358

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-L 476
            ++ ++   + A+ ++ +M+  G   +   Y+ LL M A  G  + A  ++  M S+G  
Sbjct: 359 RAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNC 418

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P   T+++L+T+ +    V  A  +L  M   G+  ++   + ++  Y K    D  +R
Sbjct: 419 MPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVR 478

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +    I  ++      F  CM N + +S K                     L  L+
Sbjct: 479 TFDRLLELDITPDD-----RFCGCMLNVMTQSPK-------------------EELGKLI 514

Query: 596 RCQDEQNER--HLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEG 653
            C D+ N +  +++ +L   ++    F          RK+       E F  I  ++   
Sbjct: 515 DCIDKANPKLGNVVKLLLEEQNGEGTF----------RKE-----ASELFDSISADV--- 556

Query: 654 AARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
             + + N L++  V +  + +A  ++ +    +++   I       WSL +++LS+GAAL
Sbjct: 557 -XKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYID-IQSKSPTQWSLHLKSLSLGAAL 614

Query: 714 IAVMHTLHRFRKRMLYYGVVPRRIKLVTG 742
            A+   ++   K +     +P  + + TG
Sbjct: 615 TALHIWMNDLSKAVEVGEELPAVLGINTG 643



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y   ++ + K   LD A +L+DEM   G +P+   F+ II     S   + A+  F  M
Sbjct: 178 LYNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKM 237

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   TYS +++ +  +G VD A+KLY+   +   R    T++ L+ +       
Sbjct: 238 PEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNF 297

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD-HALRWLRFMGSSGIRTNNFIVRQL 555
           D    +  EMK +G   ++   + L+  +        A    + M ++G++ +      L
Sbjct: 298 DGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAAL 357

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
             +  +    E A  + +   E   ++ +VLY ++LA
Sbjct: 358 LRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLA 394



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 34/219 (15%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-------------- 223
           D +L L+  A+ + W +     +  L  +   S +FDG L++++EM              
Sbjct: 263 DMALKLYDRARTEKWRI-DPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNT 321

Query: 224 -----------------VHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
                              + + NG+ L +  Y  +++   +A   E +   +K++ +  
Sbjct: 322 LLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEMKEKG 381

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-KGECSLDGSTYELMIPSLAKSGRLDAA 324
            ++    YN L+ +  + G   +A  I+E M+  G C  D  T+  +I   + SG++  A
Sbjct: 382 LELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEA 441

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
             +   M E  F P+  +  SL+   GKA R D  ++ +
Sbjct: 442 EAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTF 480


>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
           Group]
 gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
 gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 543

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 175/367 (47%), Gaps = 6/367 (1%)

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           SL + Y  +I  LAK     ++     ++ +    I  Q    L+  ++   +P +A ++
Sbjct: 142 SLPALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDL 201

Query: 293 YESMEK-GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +  ME+ G  + D +T   ++ +L+K      A  +F   K   F P   ++ +LV +  
Sbjct: 202 FRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKS-VFTPDVVLYTTLVHAWC 260

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           ++GRL+ + +V+ EMQ  G  P+   Y ++I++  +AG++  A  L  +M  +G  PN  
Sbjct: 261 RSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTA 320

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ--VDSAMKLYN 469
            F  I+ +H K+G+ +  + +   M + G  P   TY+ L+E H   GQ  +D+AMK+  
Sbjct: 321 TFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLT 380

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
            M + G  P   T+  +L L+     V+ A K+   M+ +    +V   ++LM ++  + 
Sbjct: 381 RMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEK 440

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLY 587
           S+D  LR  + M + G+  N      L E+ C +     +   L E   E A K    +Y
Sbjct: 441 SMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVY 500

Query: 588 TSVLAHL 594
             VLA L
Sbjct: 501 DMVLALL 507



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 121/295 (41%), Gaps = 8/295 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +S + P    Y  L      S   +    +F EM        +  ++A   VI  + +A 
Sbjct: 242 KSVFTPDVVLYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTA---VIDAMYRAG 298

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           ++  +     +++DS C  +T ++N +M   +  G   +  +++  M +  C  D  TY 
Sbjct: 299 QVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYN 358

Query: 310 LMIPSLAKSGR--LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
            ++ +    G+  LDAA+K+   M  +   P  + F  ++  +   G ++ + K+Y  MQ
Sbjct: 359 FLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQ 418

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
               +P+   Y  L+  +     +D  LR+  +M   G  PN   +  +IE+    G   
Sbjct: 419 ELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWK 478

Query: 428 IAMSIFTDM-ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL--RPG 479
            A     +M E     PT   Y  +L +   +GQ+    +L   M   G   RP 
Sbjct: 479 RAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEELVEMMVDRGFISRPA 533


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/499 (22%), Positives = 198/499 (39%), Gaps = 26/499 (5%)

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263
           FD++N  +    M SLF                 YN +I  L K  K + +   FK++ +
Sbjct: 351 FDLVNRVKKVGAMPSLF----------------VYNALINSLCKDGKFDEAELLFKEMGE 394

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
                +  +Y++L+  F  +G    A      M      +    Y  +I    K G L A
Sbjct: 395 KGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSA 454

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A+  F EM ++  +P+   + SL+      G+L  + ++Y EM G G  P+   + +LI 
Sbjct: 455 AVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLIS 514

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           +  +A ++  A RL+DEM      PN   + ++IE H K G    A  +   M + G +P
Sbjct: 515 ALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVP 574

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              TY  L+    S+G+V  A K  + +     +     Y+ALL    K   +  A  + 
Sbjct: 575 DTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVC 634

Query: 504 LEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            EM   G  +D+    VL+   IK+         L+ M    +R +  I   + +   K 
Sbjct: 635 REMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKA 694

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ-DEQNERHLMAILSATKHKAHAFL 621
              + A  + +  ++     ++V YT+++  L +    ++ E     +L +     H   
Sbjct: 695 GSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTY 754

Query: 622 CGLFT--GPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVW 679
           C        E   +  +    +   G    L      Y  N+L+     +G++  A  + 
Sbjct: 755 CCFLDHLAREGSMEKAVQLHNDMLKG----LLANTVSY--NILVRGFCKLGRVEEATKLL 808

Query: 680 KVAYENKLFPKAIVFDQHI 698
               +N +FP  I +   I
Sbjct: 809 DEMIDNAIFPDCITYSTII 827



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 148/345 (42%), Gaps = 36/345 (10%)

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           KG    AF++   ++K         Y  +I SL K G+ D A  LF+EM E+    +   
Sbjct: 344 KGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVT 403

Query: 343 FASLVDSMGKAGRLDTSM----KVYM-------------------------------EMQ 367
           ++ L+DS  + G+LDT++    K+ M                               EM 
Sbjct: 404 YSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMI 463

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G +P+   Y SLI  Y   GKL  A RL+ EM   G  PN   FT +I +  ++ ++ 
Sbjct: 464 DKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMT 523

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A  +F +M     +P   TY+ ++E H   G    A +L N M   GL P   TY  L+
Sbjct: 524 DAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLI 583

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
           + L     V  A K + ++    + + ++  S +L  Y K+G +  AL   R M   G+ 
Sbjct: 584 SSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVD 643

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +      L +  +K     +   LL+   +   + D V+YTS++
Sbjct: 644 MDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMI 688



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 167/374 (44%), Gaps = 38/374 (10%)

Query: 223 MVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           + H+ +  GI+  +  +  +I  L +A+++  ++  F ++L+ +   +  +YNV++    
Sbjct: 493 LYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHC 552

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
            +G   KAFE+   M +     D  TY  +I SL  +GR+  A K   ++   +F+ +  
Sbjct: 553 KEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEM 612

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCG------------------------------- 370
            +++L+    K GRL  ++ V  EM   G                               
Sbjct: 613 CYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNM 672

Query: 371 H----RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           H    RP   +Y S+I+ Y+KAG +  A  +WD M   G  PN   +T +I    K+G +
Sbjct: 673 HDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLM 732

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           D A  ++ +M  +   P   TY C L+  A  G ++ A++L+N M   GL     +Y  L
Sbjct: 733 DKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNIL 791

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           +    K   V+ A K+L EM       D ++ S ++    + G++D A+ +   M + G+
Sbjct: 792 VRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGL 851

Query: 546 RTNNFIVRQLFESC 559
           + +      L   C
Sbjct: 852 KPDTLAYNFLIYGC 865



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 1/282 (0%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++  L + G++  A  L   +K+    PS  ++ +L++S+ K G+ D +  ++ EM   G
Sbjct: 337 LVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKG 396

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
              +   Y  LI+S+ + GKLDTA+    +M +AG +     +  +I  H K G L  A+
Sbjct: 397 LCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAV 456

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           S F +M   G  PT  +Y+ L+  + + G++  A +LY+ MT  G+ P   T+T L++ L
Sbjct: 457 SFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISAL 516

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNN 549
            +   +  A ++  EM       +    +V++  + K+G+   A   L  M   G+  + 
Sbjct: 517 FRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDT 576

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +  R L  S         AK  ++       K++ + Y+++L
Sbjct: 577 YTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALL 618



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 181/436 (41%), Gaps = 40/436 (9%)

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
           D  Y +L D        D  +    +M+    K  I+++  YN +I    K   L  +  
Sbjct: 401 DVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIK--ITVY-PYNSLINGHCKLGNLSAAVS 457

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            F +++D   K    SY  L++ + NKG  ++AF +Y  M     + +  T+  +I +L 
Sbjct: 458 FFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALF 517

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           ++ R+  A +LF EM E+N  P+   +  +++   K G    + ++  +M   G  P   
Sbjct: 518 RANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTY 577

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y  LI S    G++  A +  D++    F+ N   ++ ++  + K G+L  A+ +  +M
Sbjct: 578 TYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREM 637

Query: 437 ERAG-----------------------------------FLPTPSTYSCLLEMHASSGQV 461
            + G                                     P    Y+ +++ ++ +G V
Sbjct: 638 VKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSV 697

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDV 520
             A  +++ M   G  P + TYT L+  L K  L+D A  +  EM     + + V+    
Sbjct: 698 KKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCF 757

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           L    ++GS++ A++    M   G+  N      L     K    E A  LL+  +++A 
Sbjct: 758 LDHLAREGSMEKAVQLHNDM-LKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAI 816

Query: 581 KVDLVLYTSVLAHLVR 596
             D + Y++++    R
Sbjct: 817 FPDCITYSTIIYQCCR 832



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 181/419 (43%), Gaps = 13/419 (3%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           S+ +FR   RQ   +P       + + L + R  D +L LF E++    +  I ++ A  
Sbjct: 177 SVLIFRLM-RQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVI 235

Query: 240 RV---IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           R    ++  AKA ++       +++  SD  ++   YNVL+         ++A EI   +
Sbjct: 236 RSFCELKNFAKAKEM------IQRMESSD--LNVVVYNVLIHGLCKNKRVWEAVEIKNGL 287

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   +    TY  ++  L K    +    +  EM E  F P+    +SLV+ + + G++
Sbjct: 288 IQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKV 347

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  +   ++  G  PS  +Y +LI S  K GK D A  L+ EM   G   N   ++++
Sbjct: 348 VDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSIL 407

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+S  + GKLD A+     M  AG   T   Y+ L+  H   G + +A+  ++ M   GL
Sbjct: 408 IDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGL 467

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
           +P + +YT+L++    +  +  A ++  EM   G + +  + + ++    +   +  A R
Sbjct: 468 KPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFR 527

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
               M    +  N      + E   K      A  LL   V+     D   Y  +++ L
Sbjct: 528 LFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSL 586



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 153/356 (42%), Gaps = 39/356 (10%)

Query: 274 NVLMTLFLNKGL-PYKAFE-IYESMEKGECSLDGS-TYELMIPSLAKSGRLDAAIKLFQE 330
           ++L TL L  GL P + FE + +  EK  C    S  ++L+I S  +  R+  ++ +F+ 
Sbjct: 126 SLLQTLLLRGGLDPREVFEALLDCFEK--CDFISSLGFDLLIQSYVQEKRMFDSVLIFRL 183

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES------ 384
           M++    P       +++ + K  R+D  + ++ E+   G RP   +YV++I S      
Sbjct: 184 MRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKN 243

Query: 385 YAKAGKLDTAL---------------------RLWDEMRIAGFRPNFGL------FTMII 417
           +AKA ++   +                     R+W+ + I       GL      +  ++
Sbjct: 244 FAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLV 303

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               K  + ++   +  +M   GF+PT +  S L+E     G+V  A  L N +   G  
Sbjct: 304 LGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAM 363

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRW 536
           P L  Y AL+  L K    D A  +  EM   G    DV+ S ++  + + G +D A+ +
Sbjct: 364 PSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHF 423

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           L  M  +GI+   +    L     K     +A    +  ++   K  +V YTS+++
Sbjct: 424 LGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLIS 479



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 8/255 (3%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           CY +L D   + +D   +  L   M HD       +   Y  +I   +KA  ++ ++  +
Sbjct: 648 CYAVLIDGTIKEQDTSAVFGLLKNM-HDQRLRPDKVI--YTSMIDGYSKAGSVKKAFGIW 704

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             ++D  C  +  +Y  L+      GL  KA  +++ M     + +  TY   +  LA+ 
Sbjct: 705 DIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLARE 764

Query: 319 GRLDAAIKLFQEMKERNFRP--SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           G ++ A++L  +M +       S+NI   LV    K GR++ + K+  EM      P   
Sbjct: 765 GSMEKAVQLHNDMLKGLLANTVSYNI---LVRGFCKLGRVEEATKLLDEMIDNAIFPDCI 821

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y ++I    + G LD A+  WD M   G +P+   +  +I     +G+L  A  +  DM
Sbjct: 822 TYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDM 881

Query: 437 ERAGFLPTPSTYSCL 451
            R G  P  +T+  L
Sbjct: 882 IRRGVKPNQATHKSL 896



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 6/235 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  + D  +++        ++D M+ +     I     Y  +I  L KA  ++ +
Sbjct: 679 PDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIV---TYTTLINELCKAGLMDKA 735

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              +K++L S+   +  +Y   +     +G   KA +++  M KG  + +  +Y +++  
Sbjct: 736 ELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLA-NTVSYNILVRG 794

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K GR++ A KL  EM +    P    +++++    + G LD +++ +  M   G +P 
Sbjct: 795 FCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPD 854

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
              Y  LI     AG+L  A  L D+M   G +PN      +  SH  S K  I+
Sbjct: 855 TLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSL--SHGASRKFSIS 907


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 144/294 (48%)

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           K G     +YN +I+ L +  K++ +   ++ + + DC  D+ +Y VL+      G   K
Sbjct: 353 KEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNK 412

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A  I E  E G   LD   Y  MI  L + GRLD    +  +M +   +P+ ++  ++++
Sbjct: 413 ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVIN 472

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
              +A +L+ +++ +  M   G  P+   Y +LI   +KA +   A  L  EM   G++P
Sbjct: 473 GFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKP 532

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           N   +++++    +  KLD+A++++      GF P    ++ ++    SSG+V+ A++LY
Sbjct: 533 NMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLY 592

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           + M      P L T+  L+    K +  + A+KI   +   G   D+ + ++ +
Sbjct: 593 SEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITL 646



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 190/431 (44%), Gaps = 24/431 (5%)

Query: 185 RWAKRQSWYV--------PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--L 234
           +W + +S+++        P  + Y +L  +    + FD    L + M     + G S  +
Sbjct: 129 KWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMW----EQGFSPDV 184

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           FS Y  +I  LAK   +  +   F ++ +     D   YN+L+  F  KG    A EI+E
Sbjct: 185 FS-YGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWE 243

Query: 295 SMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            + KG        +Y +MI  L K G+ D + +++  MK+         +++L+  +  +
Sbjct: 244 RLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGS 303

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G LD + +VY EM   G  P   +Y +++  Y +AG+++  L LW  M   G R     +
Sbjct: 304 GNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVS-Y 362

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
            ++I    ++ K+D A+SI+  +          TY  L+     +G ++ A+ +     +
Sbjct: 363 NILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAEN 422

Query: 474 AGLRPGLST--YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD-VLMVYIKDGSV 530
              R  L T  Y++++  L +   +D  A +L +M   G   +    + V+  +++   +
Sbjct: 423 G--RGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKL 480

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           + ALR+   M S G          L     K   +  A  L++  +    K +++ Y+ +
Sbjct: 481 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLL 540

Query: 591 LAHLVRCQDEQ 601
           +  L  CQ ++
Sbjct: 541 MNGL--CQGKK 549



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 157/362 (43%), Gaps = 3/362 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN ++  L +++K + +   F          + Q+YN+L+ +   K    KA E+   M
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 175

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   S D  +Y  +I SLAK+G +  A+KLF EM ER   P    +  L+D   K G +
Sbjct: 176 WEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDI 235

Query: 357 DTSMKVYME-MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
             + +++   ++G    P+ P Y  +I    K GK D +  +W  M+      +   ++ 
Sbjct: 236 LNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYST 295

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I     SG LD A  ++ +M   G  P    Y+ +L  +  +G+++  ++L+  M   G
Sbjct: 296 LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 355

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHAL 534
            R  +S Y  L+  L +   VD A  I   +       D     VL+  + K+G ++ AL
Sbjct: 356 CRTVVS-YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 414

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             L    +     + F    +     +    +    +L+   +   K +  +  +V+   
Sbjct: 415 SILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGF 474

Query: 595 VR 596
           VR
Sbjct: 475 VR 476



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 143/334 (42%), Gaps = 5/334 (1%)

Query: 266 CKIDTQSYNVLMTLFL--NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
           C+   +SYN L+   +  NK    ++F +Y   E    S +  TY ++I    +  + D 
Sbjct: 110 CQPGIRSYNSLLNALIESNKWDEAESFFLY--FETMGLSPNLQTYNILIKISCRKKQFDK 167

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A +L   M E+ F P    + +L++S+ K G +  ++K++ EM   G  P    Y  LI+
Sbjct: 168 AKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILID 227

Query: 384 SYAKAGKLDTALRLWDE-MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
            + K G +  A  +W+  ++     PN   + ++I    K GK D +  I+  M++    
Sbjct: 228 GFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERG 287

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
               TYS L+     SG +D A ++Y  M   G+ P +  Y  +L    +   ++   ++
Sbjct: 288 QDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLEL 347

Query: 503 LLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
              M+  G    VS + ++    ++  VD A+     +       ++     L     KN
Sbjct: 348 WKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKN 407

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                A  +LE        +D   Y+S++  L R
Sbjct: 408 GYLNKALSILEEAENGRGDLDTFAYSSMINGLCR 441



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 128/288 (44%), Gaps = 3/288 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L   L ++   +  LS+ +E   ++ +  +  F AY+ +I  L +  +L+       
Sbjct: 397 YGVLVHGLCKNGYLNKALSILEEA--ENGRGDLDTF-AYSSMINGLCREGRLDEVAGVLD 453

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++    CK +    N ++  F+       A   + +M    C     TY  +I  L+K+ 
Sbjct: 454 QMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAE 513

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R   A  L +EM  + ++P+   ++ L++ + +  +LD ++ ++ +    G +P   M+ 
Sbjct: 514 RFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHN 573

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            +I     +GK++ AL+L+ EM+     PN      ++E   K    + A  I+  + + 
Sbjct: 574 IIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY 633

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           G  P   +Y+  L+   S  ++  A+   N     G+ P   T+  L+
Sbjct: 634 GPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILV 681



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/335 (19%), Positives = 147/335 (43%), Gaps = 26/335 (7%)

Query: 136 AKIVEVVNRWKWGPELETQLDKLQF------VPKMVHITQALKVINDSDTS---LSLFRW 186
           AK+ E ++ W+  PE +   D + +      + K  ++ +AL ++ +++     L  F +
Sbjct: 373 AKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAY 432

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
           +              M+  +  E R  D +  + D+M     K    + +A   VI    
Sbjct: 433 SS-------------MINGLCREGR-LDEVAGVLDQMTKHGCKPNPHVCNA---VINGFV 475

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306
           +A KLE +   F  ++   C     +YN L+          +A+ + + M       +  
Sbjct: 476 RASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMI 535

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY L++  L +  +LD A+ L+ +  E+ F+P   +   ++  +  +G+++ ++++Y EM
Sbjct: 536 TYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEM 595

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +     P+   + +L+E + K    + A ++WD +   G +P+   + + ++      ++
Sbjct: 596 KQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRI 655

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
             A+    D    G LPT  T++ L+     +G +
Sbjct: 656 SDAVGFLNDAVDRGVLPTAITWNILVRAVLDNGAL 690



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 3/173 (1%)

Query: 379 VSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           +++I++YAK    D AL ++  M  I G +P    +  ++ +  +S K D A S F   E
Sbjct: 82  LTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFE 141

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   TY+ L+++     Q D A +L N M   G  P + +Y  L+  LAK   + 
Sbjct: 142 TMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMS 201

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR-WLRFMGSSGIRTN 548
            A K+  EM   G + DV+  ++L+  + K G + +A   W R +    +  N
Sbjct: 202 DALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPN 254


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/514 (21%), Positives = 228/514 (44%), Gaps = 39/514 (7%)

Query: 30  NFIHHLDFNHKFIKNTSFSSRLDYGET-------QNFVKDAIFFRKPNYVRSYCSGKSGD 82
           N I  +  NH FI+  +  +  ++          + F +D+++  K   +R++ + K   
Sbjct: 8   NSICTVKLNHTFIEPRACINEFEWKSNDASGVALEKFKRDSVYIDKAGKLRNF-NHKKLS 66

Query: 83  GEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVV 142
            +KC             GS+   G+G +    GF D +       P L+ +A  KI++ +
Sbjct: 67  RKKC-------------GSL--RGRGWK-FGSGFVDGIF------PVLSPTA-KKIMDYL 103

Query: 143 NRWKWGPELETQLDKLQ----FVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDE 198
            +      +   LD LQ        ++ ++  L++    D+ +S+ RW   +S +     
Sbjct: 104 QKGVDTESIWGSLDMLQASLEIWDDILTVSVQLRMRKQWDSIISICRWILLRSSFKQDVI 163

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           CY +L D   +   +    S + +++       I     Y  +I+    +  LE +   F
Sbjct: 164 CYNLLIDAFGQKFLYKEAESTYLQLLEARC---IPNEDTYALLIKAYCLSGLLEKAEAVF 220

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++ +         YN  +   +  G P KA EI+  M++  C     TY ++I    K 
Sbjct: 221 VEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKD 280

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G+   A+K+F EM     +P+   + +LV++  + G  + + +V+ +MQ  G  P    Y
Sbjct: 281 GKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSY 340

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +L+E+Y++AG    A  ++  M+  G  P+   + ++++++ ++G L+ A ++F DM+R
Sbjct: 341 NALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKR 400

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  PT  ++  LL   + +G V     + N M  +GL+       ++L L  +      
Sbjct: 401 VGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGK 460

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
             ++L  M+      D+S  ++L+  Y + G +D
Sbjct: 461 MEEVLTVMENGSCEADISTYNILINRYGQAGFID 494



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 159/332 (47%), Gaps = 1/332 (0%)

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +L S  K D   YN+L+  F  K L  +A   Y  + +  C  +  TY L+I +   SG 
Sbjct: 153 LLRSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGL 212

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L+ A  +F EMK      S  ++ S ++ + K G  + + ++++ M+  G +PS   Y  
Sbjct: 213 LEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTM 272

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI  Y K GK   AL++++EM     +PN   +T ++ + A+ G  + A  +F  M+ AG
Sbjct: 273 LINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAG 332

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   +Y+ L+E ++ +G    A ++++ M   G  P  ++Y  L+    +   ++ A 
Sbjct: 333 LEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAE 392

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +  +MK +G +  + +  VL+  + K G+V      L  M  SG++ + F++  +    
Sbjct: 393 AVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLY 452

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +   +   + +L      + + D+  Y  ++
Sbjct: 453 GRLGQFGKMEEVLTVMENGSCEADISTYNILI 484



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 110/232 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    K  K  M+   F ++L   CK +  +Y  L+  F  +GL  KA E++E M
Sbjct: 269 TYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQM 328

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++     D  +Y  ++ + +++G    A ++F  M+     P    +  LVD+ G+AG L
Sbjct: 329 QEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFL 388

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +  V+ +M+  G  P+   ++ L+ +++K G +     + ++M  +G + +  +   +
Sbjct: 389 NDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSM 448

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +  + + G+      + T ME        STY+ L+  +  +G +D    L+
Sbjct: 449 LNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGLF 500


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 203/466 (43%), Gaps = 57/466 (12%)

Query: 274 NVLMTLFLNKGLPYK-----AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           NV+    L KGL  +     A  ++  M+K  C+ +  TY  +I  L ++G ++ A+KL 
Sbjct: 160 NVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLH 219

Query: 329 QEMKER------NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
           +EM         N +P    ++ ++D + K GR D + +++ EM+  G  P    Y +LI
Sbjct: 220 KEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLI 279

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
             +  AGK D +  L+DEM   G +P+   F+++I++  K GK+  A  +   M + G +
Sbjct: 280 HGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIV 339

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   TY+ L++     G ++SA +L+ SM S GL P   +YT L+    K   V  A  +
Sbjct: 340 PNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNL 399

Query: 503 LLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             EM  +G S +V+    L+  + + G V  A +    M + G+  N+ I     +   K
Sbjct: 400 YNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCK 459

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL 621
           N     A  L         K+++  Y+ ++  L +    +    L   LS          
Sbjct: 460 NDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLS---------- 509

Query: 622 CGLFTGPEQRKQP-VLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWK 680
                  ++  QP V+++                     N++++    +GQ++ A  +++
Sbjct: 510 -------QEGLQPDVVTY---------------------NIMIHGFCKVGQVDNANILFE 541

Query: 681 VAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKR 726
              EN   P  I ++  +    +      G  L  V+  LH+  ++
Sbjct: 542 KMEENGCTPDIIAYNTLLCGFCE------GNKLEEVIKLLHKMVQK 581



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 112/496 (22%), Positives = 214/496 (43%), Gaps = 14/496 (2%)

Query: 118 DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVI--- 174
           + + + G+       S +A  +  VNR          + +  ++P +V  T  +K +   
Sbjct: 115 NEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCME 174

Query: 175 -NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
              S+ +    R  K      P    Y  L   L ++ + +  L L  EM++D+S+ G++
Sbjct: 175 HRISEATRLFLRMQKLGC--TPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVN 232

Query: 234 L---FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
                  Y+ +I  L K  + + +   F+++       D  SY+ L+  F   G   ++ 
Sbjct: 233 CKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSK 292

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            +++ M       D  T+ ++I +L K G++  A KL + M +R   P+   + SL+D  
Sbjct: 293 HLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGF 352

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
              G L+++ ++++ M   G  P    Y +LI  Y K  K+  A+ L++EM   G  PN 
Sbjct: 353 CMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNV 412

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +  +++   + GK+  A  +F  M+  G       Y   L+    +  +  AM+L+N 
Sbjct: 413 TTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNE 472

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS 529
           + S   +  +  Y+ L+  L K   ++ A ++  ++   G   DV   ++++  + K G 
Sbjct: 473 LKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQ 532

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYT 588
           VD+A      M  +G   +      L    C  N L E  K LL   V+     +    T
Sbjct: 533 VDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIK-LLHKMVQKDVSPNAASCT 591

Query: 589 SVLAHLVRCQDEQNER 604
            V+  L  C+DE+ ++
Sbjct: 592 IVVDML--CKDEKYKK 605



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 120/300 (40%), Gaps = 9/300 (3%)

Query: 316 AKSGRLDA--AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            K+G + A  A   F  M   +  P  + F  L+  + K         +Y EM+  G  P
Sbjct: 65  CKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSP 124

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
                  L        ++  AL     +   G+ PN   +T +I+      ++  A  +F
Sbjct: 125 DLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLF 184

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS------AGLRPGLSTYTALL 487
             M++ G  P   TY  L++    +G V+ A+KL+  M +         +PG+ TY+ ++
Sbjct: 185 LRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIII 244

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
             L K    D A ++  EMK  G   DV S S ++  +   G  D +      M   G++
Sbjct: 245 DGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQ 304

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            +      L ++  K      AK LLE  ++     +L+ Y S++       D  + R L
Sbjct: 305 PDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSAREL 364



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 131/312 (41%), Gaps = 9/312 (2%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +AF  ++ M +       S++  ++  LAK         L+ EM+     P     + L 
Sbjct: 74  QAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILA 133

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           + +    R+  ++     +   G+ P+   Y +LI+      ++  A RL+  M+  G  
Sbjct: 134 NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCT 193

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSI----FTDMERAGFLPTPS--TYSCLLEMHASSGQV 461
           PN   +  +I+   ++G ++IA+ +      D  + G    P   TYS +++     G+ 
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           D A +L+  M + G+ P + +Y+ L+         D +  +  EM   G   D+    VL
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL 313

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESA 579
           +    K+G V  A + L  M   GI  N      L +  CM   L  SA+ L  +     
Sbjct: 314 IDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDL-NSARELFLSMPSKG 372

Query: 580 AKVDLVLYTSVL 591
            + D + YT+++
Sbjct: 373 LEPDEISYTTLI 384


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 149/331 (45%), Gaps = 4/331 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  K+   +VP D C  +L + L + R F  +   + E++       +  F   N
Sbjct: 85  AIQCFRLTKKHKIWVPFDTCRKVL-EHLMKLRYFRLVWGFYKEILECGYPPSLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M   
Sbjct: 141 ILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAT 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A ++  EM +    P+   F +L+D   K G++D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M   G  P    Y +LI    + G L  A  L +EM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+I   +   M R        TY+ L+      G+   A K+   M + GL+P 
Sbjct: 321 SCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             TYT ++    K   V  A+K+L EM+  G
Sbjct: 381 NGTYTMIMNEFCKTGDVKTASKLLREMQRNG 411



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 142/311 (45%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K     + +  +K++L+         +N+LM  F  +G    A  +++
Sbjct: 101 FDTCRKVLEHLMKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        ++  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 161 AITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKES 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + ++  EM   G  P+   + +LI+ + K GK+D A+ ++ +M   GF P+   + 
Sbjct: 221 KMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    + G L  A  +  +M   G  P   TY+ L++     G ++   +L   M   
Sbjct: 281 TLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R    TYTAL++ L +      A K+L EM T+G   D     ++M  + K G V  A
Sbjct: 341 NIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTA 400

Query: 534 LRWLRFMGSSG 544
            + LR M  +G
Sbjct: 401 SKLLREMQRNG 411



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 143/340 (42%), Gaps = 1/340 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ LM  +L  G    A + +   +K +  +   T   ++  L K          +
Sbjct: 65  DLYVFSGLMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  + PS   F  L+    K G +  +  V+  +     RPS   + +L+  Y + 
Sbjct: 125 KEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M   G +P+   ++++I    K  K+D A  +  +M   G +P   T+
Sbjct: 185 GDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S G  P L TY  L+  L +R  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++      + M    IR +      L     +      
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           A+ +L   +    K D   YT ++    +  D +    L+
Sbjct: 365 AEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLL 404



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 93/207 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +     ++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I  L + G L  A  L +EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + ++   M     R     Y +LI    + G+   A ++  EM   G +P+ G +TMI
Sbjct: 328 EITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLP 443
           +    K+G +  A  +  +M+R G +P
Sbjct: 388 MNEFCKTGDVKTASKLLREMQRNGPVP 414


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +     RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 94/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F +++D+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 4/336 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           + TYT ++    K+  V   +K+L EM+  GY+  V
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYAPSV 416



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 148/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  +  EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 140/306 (45%), Gaps = 6/306 (1%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I +  +SG L  AI+ ++  KE  FR  F+    +++ + K          Y E   CG
Sbjct: 72  LITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECG 131

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           +  S   +  L+ S+ K G++  A  ++D +   G RP+   F  ++  + K G LD   
Sbjct: 132 YPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGF 191

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +   M+ +G  P   TYS L+       ++D A +L++ M   GL P   T+T L+   
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGH 251

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K   VD+A +I  +M +   S D+   + L+  + K G +  A      M   G++ + 
Sbjct: 252 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDK 311

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN---ERHL 606
                L +   K    E+A    +  ++   ++D V YT++++ L  CQ+ ++   E+ L
Sbjct: 312 ITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGL--CQEGRSVDAEKML 369

Query: 607 MAILSA 612
             +LS 
Sbjct: 370 REMLSV 375



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G+ P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 155/362 (42%), Gaps = 1/362 (0%)

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
           +C  D  +YN ++     KG    A ++   M+      + +TY +++    K G L  A
Sbjct: 238 NCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEA 297

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
             + + M + N  P    +  L++ +   GR++ + K+  EM+     P    Y +LI  
Sbjct: 298 ANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLING 357

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
             +  K+  A +L +EM   G +PN     ++++ + K GK+D A +  T ME +GF P 
Sbjct: 358 CLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPD 417

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TY+ L+  +  +G +  A +  + M    ++    T   +L  L + K ++ A K+L 
Sbjct: 418 CVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLS 477

Query: 505 EMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
             +  GY +D VS   +++ Y KDG+VD AL+    M    I  +      +     +  
Sbjct: 478 SARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCG 537

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCG 623
             E A   L   +ES    D   Y ++L    R  D +        +     K   F C 
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCN 597

Query: 624 LF 625
           + 
Sbjct: 598 IL 599



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 176/399 (44%), Gaps = 6/399 (1%)

Query: 190 QSWYVPGDECYVMLFDVL-NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           Q+  +P    Y ML + L NE R  +    L DEM    +   +    +YN +I    + 
Sbjct: 306 QNNLLPDVWTYNMLINGLCNEGR-IEEAFKLRDEM---ENLKLLPDVVSYNTLINGCLEW 361

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K+  ++   +++ +   K +  ++N+++  +  +G    A      ME+   S D  TY
Sbjct: 362 SKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTY 421

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I    K+G +  A +   EM  +N +       +++ ++ +  +L+ + K+    + 
Sbjct: 422 NTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARK 481

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G+      Y +LI  Y K G +D AL+LWDEM+     P+   +  II    + GK + 
Sbjct: 482 RGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQ 541

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+S   ++  +G LP  +TY+ +L  +   G V+ A + +N M     +P + T   LL 
Sbjct: 542 AISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLR 601

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRT 547
            L    +++ A K+     + G ++D    + L+  + K+G +D A   L  M    +  
Sbjct: 602 GLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGP 661

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
           +++    +  +   +     A+  +   +E     D VL
Sbjct: 662 DHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVL 700



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 148/363 (40%), Gaps = 36/363 (9%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN+L+    N+G   +AF++ + ME  +   D  +Y  +I    +  ++  A KL 
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLL 371

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM E+  +P+      +V    K G++D +     +M+  G  P    Y +LI  Y KA
Sbjct: 372 EEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKA 431

Query: 389 GKLDTALRLWDEM-----------------------------------RIAGFRPNFGLF 413
           G +  A R  DEM                                   R  G+  +   +
Sbjct: 432 GNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSY 491

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +I  + K G +D A+ ++ +M+    +P+  TY+C++      G+ + A+   N +  
Sbjct: 492 GTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLE 551

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDH 532
           +GL P  +TY  +L    +   V+ A +   +M    +  DV   ++L+  +  +G ++ 
Sbjct: 552 SGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEK 611

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           AL+      S G   +      L  S  K    + A  LL    E     D   Y +++ 
Sbjct: 612 ALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIIT 671

Query: 593 HLV 595
            L 
Sbjct: 672 ALT 674



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/352 (19%), Positives = 148/352 (42%), Gaps = 39/352 (11%)

Query: 280 FLNKGLPYKAFEIYESMEKGE-------CSL----------------------------- 303
           ++  G P+ AF+I++ M++         C+                              
Sbjct: 145 YVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGI 204

Query: 304 --DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
             + +T+ ++I       +   A++    M + N  P    + +++D++ K GRL  +  
Sbjct: 205 VPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARD 264

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           + M+M+  G  P+   Y  L+  Y K G L  A  + + M      P+   + M+I    
Sbjct: 265 LLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLC 324

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
             G+++ A  +  +ME    LP   +Y+ L+       ++  A KL   M+  G++P   
Sbjct: 325 NEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAV 384

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFM 540
           T+  ++    K   +D A+  + +M+  G+S D V+ + ++  Y K G++  A R +  M
Sbjct: 385 THNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEM 444

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           G   ++ ++  +  +  +  +    E A  LL +  +    +D V Y +++ 
Sbjct: 445 GRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIV 496



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 164/399 (41%), Gaps = 28/399 (7%)

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK---AGRLDTSMKVYMEMQG 368
           I +  +SG+   A ++F++MK    RP+     +L++S+ +   +  +  S + + +   
Sbjct: 142 IGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIK 201

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+   +  +I  Y    K   A+   + M      P+   +  I+++  K G+L  
Sbjct: 202 LGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGD 261

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +  DM+  G LP  +TY+ L+  +   G +  A  +   MT   L P + TY  L+ 
Sbjct: 262 ARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLIN 321

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRT 547
            L     ++ A K+  EM+ +    DV + + L+    + S +  A + L  M   G++ 
Sbjct: 322 GLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKP 381

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV---------LAHLVRCQ 598
           N      + +   K    + A   +    ES    D V Y ++         +    R  
Sbjct: 382 NAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTM 441

Query: 599 DEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGA--AR 656
           DE   ++ M + S T +     LC      E  K  +LS  R+  + ID E+  G     
Sbjct: 442 DEMGRKN-MKMDSVTLNTILRTLCREKKLEEAYK--LLSSARKRGYFID-EVSYGTLIVG 497

Query: 657 YFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFD 695
           YF +         G ++RA  +W    E ++ P  + ++
Sbjct: 498 YFKD---------GNVDRALKLWDEMKEKEIIPSTVTYN 527



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 15/283 (5%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           + D  L L+DEM     K  I     YN +I  L +  K E +     ++L+S    D  
Sbjct: 503 NVDRALKLWDEM---KEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDET 559

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN ++  +  +G   KAF+ +  M +     D  T  +++  L   G L+ A+KLF   
Sbjct: 560 TYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTW 619

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             +        + +L+ S+ K GRLD +  +  EM+     P    Y ++I +   +G++
Sbjct: 620 VSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRI 679

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A     +M   G  P+  L            +LD   ++ T         +   YS  
Sbjct: 680 REAEEFMSKMLEKGNLPDQVL------------QLDKNETVVTSETSEESDSSSVAYSEW 727

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           ++   + G+   AM+++      G+    STY  L+  L KR+
Sbjct: 728 IKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRR 770



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 129/296 (43%), Gaps = 18/296 (6%)

Query: 160 FVPKMVHITQALKVINDSDTSLSLFRWAK-RQSWYVPGDECYVMLFDVLNESRDFDGMLS 218
           F+ ++ + T  +    D +   +L  W + ++   +P    Y  +   L +    +  +S
Sbjct: 485 FIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAIS 544

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
             +E++       +   + YN ++    +   +E ++    K++++  K D  + N+L+ 
Sbjct: 545 KLNELLESGL---LPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLR 601

Query: 279 LFLNKGLPYKAFEIYES-MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
               +G+  KA +++ + + KG+ ++D  TY  +I SL K GRLD A  L  EM+E+   
Sbjct: 602 GLCMEGVLEKALKLFNTWVSKGK-AIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELG 660

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P    + +++ ++  +GR+  + +   +M   G+ P   +            +LD    +
Sbjct: 661 PDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVL------------QLDKNETV 708

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
                      +   ++  I+     GK   AM IF + ++ G     STY  L++
Sbjct: 709 VTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMD 764



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 4/223 (1%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES---HAKSGKLDIA 429
           PS  +  + I +Y ++G+   A +++ +M+    RPN      ++ S   +  S  +  +
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
              F D  + G +P  +T++ ++  +    +   A++  N M      P   TY  +L  
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDT 252

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTN 548
           L K+  +  A  +L++MK+ G   + +  ++L+  Y K G +  A   +  M  + +  +
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPD 312

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +    L          E A  L +         D+V Y +++
Sbjct: 313 VWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLI 355


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 152/335 (45%), Gaps = 4/335 (1%)

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
           +S   ID  SYNVL++ +   G   +A  + + M     S + +TY+ ++ SL   G+L 
Sbjct: 142 ESGAVIDVTSYNVLISGYCKSGEIEEALRVLDRMG---VSPNAATYDAVLCSLCDRGKLK 198

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A+++     +    P       L+D+  K   +  +MK++ EM+  G +P    Y  LI
Sbjct: 199 QAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLI 258

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           + + K G+LD A+R   ++   G +P+     MI+ S    G+   AM +   M R G L
Sbjct: 259 KGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCL 318

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P+  T++ L+      G +  A+ +   M   G  P   ++  L+      K +D A + 
Sbjct: 319 PSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEY 378

Query: 503 LLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
           L  M + G   D+   ++L+  + KDG VD A+  L  + S G   +      + +  +K
Sbjct: 379 LEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLK 438

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               E A  LLE       K DL+  TSV+  L R
Sbjct: 439 VGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSR 473



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 167/394 (42%), Gaps = 9/394 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCF 258
           Y +L     +S + +  L + D M       G+S  +A Y+ V+  L    KL+ +    
Sbjct: 152 YNVLISGYCKSGEIEEALRVLDRM-------GVSPNAATYDAVLCSLCDRGKLKQAMQVL 204

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            + L S C  D  +  VL+     +    +A +++  M    C  D  TY ++I    K 
Sbjct: 205 GRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKG 264

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GRLD AI+  +++     +P       ++ S+   GR   +MK+   M   G  PS   +
Sbjct: 265 GRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTF 324

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI    + G L  AL + + M   G  PN   F  +I+       +D A+     M  
Sbjct: 325 NILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVS 384

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P   TY+ LL      G+VD A+ + + ++S G  P L +Y  ++  L K    ++
Sbjct: 385 RGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAEL 444

Query: 499 AAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A ++L EM   G   D ++ + V+    ++G V  A+++  ++    IR N FI   +  
Sbjct: 445 AVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIIT 504

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              K+     A   L   V    K     YT+++
Sbjct: 505 GLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLI 538



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 110/528 (20%), Positives = 206/528 (39%), Gaps = 78/528 (14%)

Query: 22  NFRYPFHSNFIHHLDFNHKFIKNTSF---SSRLDYGETQNFVKDAIFFRKPNYVRSYCS- 77
           N    F  + I HL    + I+N      S  L+Y   +    D I       +R +C  
Sbjct: 73  NTSLNFEESEIRHL---RRLIRNGELEEGSRFLEYMTNKGKSPDVIACTA--LIREFCKI 127

Query: 78  GKSGDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAK 137
           G++ +       ++ +  L+ESG+VI               +V++ G    +  +  + +
Sbjct: 128 GRTKNA------SQIMGILEESGAVIDV----------TSYNVLISG----YCKSGEIEE 167

Query: 138 IVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGD 197
            + V++R    P   T    L  +     + QA++V+             + QS   P  
Sbjct: 168 ALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLG-----------RQLQSKCYPDV 216

Query: 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCC 257
               +L D   +       + LF+EM +   K  +     YN +I+   K  +L+ +   
Sbjct: 217 VTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVV---TYNVLIKGFCKGGRLDEAIRF 273

Query: 258 FKKVLDSDCKIDTQS-----------------------------------YNVLMTLFLN 282
            KK+    C+ D  S                                   +N+L+     
Sbjct: 274 LKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQ 333

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           KGL  KA  + E M K   + +  ++  +I        +D AI+  + M  R   P    
Sbjct: 334 KGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVT 393

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           +  L+ ++ K G++D ++ +  ++   G  PS   Y ++I+   K GK + A+ L +EM 
Sbjct: 394 YNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMC 453

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             G +P+    T ++   ++ GK+  AM  F  ++R    P    Y+ ++     S Q  
Sbjct: 454 YKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTS 513

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            A+     M + G +P  +TYT L+  +    L + A+K+  E+ + G
Sbjct: 514 LAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRG 561



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 105/208 (50%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +++S+N L+  F N     +A E  E M    C  D  TY +++ +L K G++D A+ + 
Sbjct: 355 NSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVIL 414

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            ++  +   PS   + +++D + K G+ + ++++  EM   G +P      S++   ++ 
Sbjct: 415 SQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSRE 474

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           GK+  A++ +  ++    RPN  ++  II    KS +  +A+    DM   G  PT +TY
Sbjct: 475 GKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATY 534

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + L++     G  + A KL N + S GL
Sbjct: 535 TTLIKGITYEGLAEDASKLSNELYSRGL 562



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 8/226 (3%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L ++G L+   +  + M  +   P      +L+    K GR   + ++   ++  G    
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI  Y K+G+++ ALR+ D M   G  PN   +  ++ S    GKL  AM +  
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
              ++   P   T + L++       V  AMKL+N M + G +P + TY  L+    K  
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
            +D A + L ++ + G   DV + ++++  +  G      RW+  M
Sbjct: 266 RLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGG-----RWMDAM 306



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 92/206 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++N +IQ       ++ +    + ++   C  D  +YN+L+T     G    A  I   +
Sbjct: 358 SFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQL 417

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               CS    +Y  +I  L K G+ + A++L +EM  +  +P      S+V  + + G++
Sbjct: 418 SSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKV 477

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +MK +  ++    RP+A +Y S+I    K+ +   A+    +M   G +P    +T +
Sbjct: 478 REAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTL 537

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFL 442
           I+     G  + A  +  ++   G +
Sbjct: 538 IKGITYEGLAEDASKLSNELYSRGLV 563


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 202/443 (45%), Gaps = 5/443 (1%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE 209
           E+++  +K QF+  M +  ++ K +   D +L+ F    + +  +P    + +L   + +
Sbjct: 30  EIQSHSNKTQFLNFMRNQCKSGK-LKSIDEALNFFHTMAKMN-PLPSVIDFTLLLGFIVK 87

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            + +   +SL  EM H S       F   N VI  L     +   +     +L    +  
Sbjct: 88  MKHYTTAISLVKEM-HSSLGIKPDTF-ILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPS 145

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             ++ +L+     KG   +A E+ + +EK     D  TY ++I  L K G+   A+   +
Sbjct: 146 VVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLR 205

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           +M+ERN+ P+  ++++++D + K G +  ++ + +EM G G +P+   Y  LI+     G
Sbjct: 206 KMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFG 265

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           +   A  L DEM   G  P+     ++++   K GK+  A S+   M   G +P   TY+
Sbjct: 266 RWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYN 325

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L++ +    Q+D A +++  M S G  P +  YT+L+    K K ++ A  +L EM  +
Sbjct: 326 SLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKV 385

Query: 510 GYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G++ DV     L+  + + G    A      M   G   N      + +   K+ L   A
Sbjct: 386 GFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEA 445

Query: 569 KPLLETYVESAAKVDLVLYTSVL 591
             L     +S   +++V+Y+ +L
Sbjct: 446 LSLFHAMEKSNLDLNIVIYSIIL 468



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 122/271 (45%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN L+  +  +    +A  ++E M    C  D   Y  +I    K   ++ A+ L 
Sbjct: 320 DVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLL 379

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM +  F P    + +L+    + GR   + ++++ M   G  P+      +++   K+
Sbjct: 380 DEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKS 439

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
             L  AL L+  M  +    N  ++++I++    +GKL+ A+ +F+ +   G       Y
Sbjct: 440 QLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAY 499

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + ++   A  G +D A  L ++M   G  P   TY   +  L   + +  + K L  M+ 
Sbjct: 500 TIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRD 559

Query: 509 MGYSVDVSASDVLMVYIKDGSVDHALRWLRF 539
            G+SVD + +++++ Y+     D+ LR   F
Sbjct: 560 KGFSVDATTTEMIINYLSTNQGDNELREFLF 590



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 129/303 (42%), Gaps = 4/303 (1%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           + L++  + K      AI L +EM      +P   I   +++S+     +     V   M
Sbjct: 78  FTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFGFSVLGTM 137

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G  PS   +  LI      G +  A+ L D +   G+R +   + ++I    K GK 
Sbjct: 138 LKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKT 197

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A+     ME   + P    YS +++     G V  A+ L   M+  G++P L TYT L
Sbjct: 198 SEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCL 257

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI 545
           +  L        A  +L EM  MG   D+ + ++L+ V  K+G +  A   + FM   G 
Sbjct: 258 IQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGE 317

Query: 546 RTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
             + F    L +  C++N + E+ + + E  V      D+V YTS++    + ++     
Sbjct: 318 VPDVFTYNSLIDRYCLQNQMDEATR-VFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAM 376

Query: 605 HLM 607
           HL+
Sbjct: 377 HLL 379


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 147/294 (50%), Gaps = 3/294 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + LF++M+ ++ K  +  F   N ++    K  K++     F  ++    K +  +YN L
Sbjct: 280 IDLFNKMILENIKPDVYTF---NILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSL 336

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +       KA  I+ +M +G  + D  +Y +MI    K  + D A+ LF+EM  +N 
Sbjct: 337 MDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    ++SL+D + K+GR+  ++++  +M   G  P+   Y S++++  K  ++D A+ 
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIA 456

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +++  G +PN   ++++I+   +SGKL+ A  +F  +   G      TY+ +++   
Sbjct: 457 LLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFC 516

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             G  + A+ L + M   G  P   TY  ++  L K+   D+A K+L EM   G
Sbjct: 517 VEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARG 570



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/442 (22%), Positives = 196/442 (44%), Gaps = 5/442 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           ND D ++SLF    R++   P  E +  +   L +S+ +  +L L  +M     K  +  
Sbjct: 64  NDVDDAVSLFNRLLRRNTTPPAFE-FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLV- 121

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
               N +I    +   +  ++  F K+L      DT ++  L+     KG   +AF  ++
Sbjct: 122 --NCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHD 179

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            +       D  +Y  +I  L K G   AA+ L Q +     +P+  ++ +++DSM K  
Sbjct: 180 KVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVK 239

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            ++ +  ++ EM   G  P    Y +LI  +   GKL+ A+ L+++M +   +P+   F 
Sbjct: 240 LVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFN 299

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           +++ +  K GK+    ++F  M + G  P   TY+ L++ +    +V+ A  ++N+M   
Sbjct: 300 ILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG 359

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHA 533
           G+ P + +Y+ ++    K K  D A  +  EM       D V+ S ++    K G + +A
Sbjct: 360 GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYA 419

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L+ +  M   G+         + ++  K    + A  LL    +   + ++  Y+ ++  
Sbjct: 420 LQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKG 479

Query: 594 LVRCQDEQNERHLMAILSATKH 615
           L +    ++ R +   L    H
Sbjct: 480 LCQSGKLEDARKVFEGLLVKGH 501



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 167/367 (45%), Gaps = 2/367 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L K  +   +    ++V  +  + +   YN ++       L  +AF+++  M
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I      G+L+ AI LF +M   N +P    F  LV++  K G++
Sbjct: 252 ISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
                V+  M   G +P+   Y SL++ Y    +++ A  +++ M   G  P+   ++++
Sbjct: 312 KEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K  K D AM++F +M R   +P   TYS L++  + SG++  A++L + M   G+
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P + TY ++L  L K   VD A  +L ++K  G   ++    +L+  + + G ++ A +
Sbjct: 432 PPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARK 491

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   G   N      + +      L+  A  LL    ++    D   Y  ++  L 
Sbjct: 492 VFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLF 551

Query: 596 RCQDEQN 602
           + +DE +
Sbjct: 552 K-KDEND 557



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 137/282 (48%), Gaps = 7/282 (2%)

Query: 201 VMLFDVLNESRDFDGML----SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
           V  F++L  +   DG +    ++FD M+    K     F  YN ++       ++  +  
Sbjct: 295 VYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN---FVTYNSLMDGYCLVKEVNKAKS 351

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            F  +       D QSY++++  F       +A  +++ M +     D  TY  +I  L+
Sbjct: 352 IFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLS 411

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           KSGR+  A++L  +M +R   P+   + S++D++ K  ++D ++ +  +++  G +P+  
Sbjct: 412 KSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMY 471

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y  LI+   ++GKL+ A ++++ + + G   N   +T++I+     G  + A+++ + M
Sbjct: 472 TYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKM 531

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           E  G +P   TY  ++       + D A KL   M + G+RP
Sbjct: 532 EDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/308 (18%), Positives = 122/308 (39%), Gaps = 44/308 (14%)

Query: 328 FQEMKER--NFRP------SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           FQ +K    NF P      +F  ++S   +      +D ++ ++  +      P A  + 
Sbjct: 30  FQFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFN 89

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            ++ S  K+    T L L  +M   G +PN     ++I    + G +  A S+F  + + 
Sbjct: 90  KILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKM 149

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG------------------------ 475
           G++P   T++ L++     GQ+  A   ++ + + G                        
Sbjct: 150 GYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAA 209

Query: 476 -----------LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMV 523
                      ++P +  Y  ++  + K KLV+ A  +  EM + G S D V+ S ++  
Sbjct: 210 LDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISG 269

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           +   G ++ A+     M    I+ + +    L  +  K+   +  K + +  ++   K +
Sbjct: 270 FCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN 329

Query: 584 LVLYTSVL 591
            V Y S++
Sbjct: 330 FVTYNSLM 337



 Score = 46.6 bits (109), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 67/349 (19%), Positives = 132/349 (37%), Gaps = 17/349 (4%)

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y S   ++     +D A+ L++ +      P    F  I+ S  KS      + +   ME
Sbjct: 53  YSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKME 112

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P     + L+      G +  A  ++  +   G  P   T+T L+  L  +  + 
Sbjct: 113 FRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQ 172

Query: 498 VAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A     ++  +G+  D +S   ++    K G    AL  L+ +  + ++ N  +   + 
Sbjct: 173 QAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTII 232

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH---LVRCQDEQNERHLMAILSAT 613
           +S  K  L   A  L    +      D+V Y+++++    L +  D  +  + M IL   
Sbjct: 233 DSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKM-ILENI 291

Query: 614 KHKAHAF--LCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV--NVLLNYLVLM 669
           K   + F  L   F    + K+    F        D  +++G    FV  N L++   L+
Sbjct: 292 KPDVYTFNILVNAFCKDGKMKEGKTVF--------DMMMKQGIKPNFVTYNSLMDGYCLV 343

Query: 670 GQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMH 718
            ++N+A+ ++    +  + P    +   I     ++       L   MH
Sbjct: 344 KEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMH 392


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 180/390 (46%), Gaps = 19/390 (4%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +   L+ I     +  +F+WA RQ  +      Y    + L +         +FD+M++ 
Sbjct: 7   VIHVLENIKSPKLASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYK 66

Query: 227 SSKNGISLFSAYNRVIQYLAKADK-LEMSYCCFKKVLDSDCKIDTQS---YNVLMTLFLN 282
                I  +    R +   AK D  LE+       + D + K+ T +    N+L++    
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALEL-------LQDMESKMLTPTTFIVNMLVSCLCK 119

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
            G    A+E+Y+ +   ECSLD  +Y ++   L K+ ++D A+ +F EM+E    PS   
Sbjct: 120 NGKVDAAYELYKRLSD-ECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLT 178

Query: 343 FASLVDSMGKAGRLDTSMKVYMEM----QGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +  L+    +AGR++ +M +  EM    +G    P    Y ++I  + KA +L TA  + 
Sbjct: 179 YNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVL 238

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M  +G  PN   F  +++    +GKLD A ++F  M      PT  TY+ L+  HA +
Sbjct: 239 RRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARA 298

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSA 517
            ++D A   +  M   G+ P + TYTAL+  L     V+ A +IL  M + G   + V+ 
Sbjct: 299 LRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTY 358

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
           + V+    K G ++ A +   F  + G RT
Sbjct: 359 TRVIGALCKGGQIERATKL--FNDAMGSRT 386



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 143/328 (43%), Gaps = 18/328 (5%)

Query: 197 DEC------YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           DEC      Y ML   L ++   D  L++F EM  ++    +     YN ++    +A +
Sbjct: 135 DECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAV---VPSLLTYNGLLYGYCRAGR 191

Query: 251 LEMSYCCFKKVLD----SDCKIDTQSYNVLMTLFLN-KGLPYKAFEIYESMEKGECSLDG 305
           +E +    +++++    SD   D  SYN +++ F   + LP   + +   M K  CS + 
Sbjct: 192 MEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARY-VLRRMIKSGCSPNV 250

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            T+  ++  L  +G+LD A  +F+ M ERN  P+   +  L+    +A R+D +   +++
Sbjct: 251 VTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVD 310

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G  P+   Y +LI     A K++ AL +   M   G  PN   +T +I +  K G+
Sbjct: 311 MLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQ 370

Query: 426 LDIAMSIFTDM---ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           ++ A  +F D      A   P    YS ++       +   A + +  M  + L      
Sbjct: 371 IERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHI 430

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMG 510
           Y A+   L   +  +   ++ LE    G
Sbjct: 431 YKAMADGLELVQETEKVERVCLEASAHG 458


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 178/402 (44%), Gaps = 4/402 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L     +    D  + + DEM   ++K  +     Y  +I  L +  K+E +
Sbjct: 298 PSTRTYTVLIKAKCDIGMTDKAMKMLDEM---ATKACVPNVHTYTILIDRLCREGKIEEA 354

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F+K+L         ++N L+  +  +G    AF++   MEKG C  +  TY  ++  
Sbjct: 355 NGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEG 414

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L +  +   A  L + + +    P    +  LVD   K G+L+ +  ++  M   G  P 
Sbjct: 415 LCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 474

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              + +LI+   K G+L+ A  +   M   G   +   FT +I+ H K GK      +F 
Sbjct: 475 GFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFE 534

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M     L T  T++C L+      +++ A  +   M   GL P + T+T L+    +  
Sbjct: 535 NMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG 594

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
              ++ K+L  MK  G S +V    +++  +  +G V+ A   L  M S G+  N+F   
Sbjct: 595 ETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYA 654

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L ++ +K    + A  ++ T V++  + +  +Y+++L+  V
Sbjct: 655 VLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFV 696



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 139/315 (44%), Gaps = 40/315 (12%)

Query: 238 YNRVIQYLAKADKLEMS--YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           Y  V+  L K   ++ +  +CC  KVL     +DT     L+     +    +AF ++E 
Sbjct: 197 YRTVVNALCKNGFVQAAEMFCC--KVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEK 254

Query: 296 MEKGE-CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           M K E C  +  TY ++I  L ++GRL+ A +L QEM E+  +PS   +  L+ +    G
Sbjct: 255 MSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIG 314

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
             D +MK+  EM      P+   Y  LI+   + GK++ A  ++ +M   G  P    F 
Sbjct: 315 MTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFN 374

Query: 415 MIIESHAKSGKLDIAMSIFTDMERA----------------------------------- 439
            +I  + K G +  A  + + ME+                                    
Sbjct: 375 ALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDN 434

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G LP   TY+ L++     GQ++ A  ++NSM SAGL P   T+TAL+  L K   ++ A
Sbjct: 435 GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQA 494

Query: 500 AKILLEMKTMGYSVD 514
             IL  M   G S+D
Sbjct: 495 NGILGSMVKKGISLD 509



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 186/460 (40%), Gaps = 66/460 (14%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM----LSLFDEMVHDSSKN 230
           N+ +  +  F+W  RQS Y    +  + L  VL  SRD  G+    + L  +   DS   
Sbjct: 81  NNVELGVRFFKWVCRQSSYCYDLDGRIQLLGVL-VSRDLFGVAQKAVVLLIQECEDSENG 139

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
            + L  A + + +         +SY C               Y+ L+       + + AF
Sbjct: 140 VVKLMGALDGMTEL-----GFRLSYPC---------------YSTLLMCLAKLNMGFVAF 179

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            +Y  M      L G  Y  ++ +L K+G + AA     ++    F    ++  SLV + 
Sbjct: 180 LVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLAN 239

Query: 351 GKAGRLDTSMKVYMEM---QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
            +   L  + +V+ +M   + C  RP++  Y  LI    +AG+L+ A +L  EM   G +
Sbjct: 240 CRRDDLGEAFRVFEKMSKEENC--RPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQ 297

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+   +T++I++    G  D AM +  +M     +P   TY+ L++     G+++ A  +
Sbjct: 298 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 357

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV---- 523
           +  M   GL PG+ T+ AL+    K   V  A ++L  M+      ++   + LM     
Sbjct: 358 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 417

Query: 524 --------------------------------YIKDGSVDHALRWLRFMGSSGIRTNNFI 551
                                           + K+G ++ A      M S+G+  + F 
Sbjct: 418 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 477

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              L +   K    E A  +L + V+    +D V +T+++
Sbjct: 478 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALI 517



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/234 (19%), Positives = 102/234 (43%), Gaps = 15/234 (6%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T+ ++I    ++G    ++K+ + MK+    P+   +  +++ +   GR++ +  +   M
Sbjct: 582 THTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSM 641

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G  P+   Y  L++++ KAG+LD A ++   M   G +PN  +++ ++     S   
Sbjct: 642 SSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTA 701

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A ++ +  +              L+  + S + +    L N +   G+ P    Y  L
Sbjct: 702 IGARALSSTGD--------------LDARSLSSEENDNNCLSNEIKKCGV-PTEDLYNFL 746

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
           +  L K   +  A ++  +M   G   D + S ++  Y K    D+ L +++ +
Sbjct: 747 VVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLV 800



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 115/252 (45%), Gaps = 23/252 (9%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I+   +A +  +S    +++  + C  +  +Y +++    N G   +A  I  SM    
Sbjct: 586 LIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFG 645

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD------------ 348
            S +  TY +++ +  K+GRLD A ++   M +   +P+ +I+++L+             
Sbjct: 646 VSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGAR 705

Query: 349 SMGKAGRLDT---------SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
           ++   G LD          +  +  E++ CG  P+  +Y  L+    K G++  A +L  
Sbjct: 706 ALSSTGDLDARSLSSEENDNNCLSNEIKKCG-VPTEDLYNFLVVGLCKEGRIIEADQLTQ 764

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           +M   G  P+  + + IIE + K+ K D  +     +    F+P+ ++Y  ++    + G
Sbjct: 765 DMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEG 823

Query: 460 QVDSAMKLYNSM 471
           +V  A KL + +
Sbjct: 824 RVQEAQKLVSDL 835



 Score = 46.6 bits (109), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 23/188 (12%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP------------SLAKSG 319
           +Y VL+   +  G   +AF+I  +M K  C  +   Y  ++             +L+ +G
Sbjct: 652 TYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTG 711

Query: 320 RLDAAIKLFQEMKERNFR---------PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
            LDA   L  E  + N           P+ +++  LV  + K GR+  + ++  +M   G
Sbjct: 712 DLDAR-SLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHG 770

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P   +  S+IE Y K  K D  L     +    F P+F  +  +I      G++  A 
Sbjct: 771 LFPDKAIS-SIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQ 829

Query: 431 SIFTDMER 438
            + +D+ R
Sbjct: 830 KLVSDLVR 837


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 157/337 (46%), Gaps = 13/337 (3%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAK-ADKLE 252
           P  + Y+ + D+L E       +  + EM     + GI S   + N +I+ L K  + ++
Sbjct: 118 PTQKAYLTILDILVEENHVKRAIGFYREM----RELGIPSSVVSLNILIKALCKNKETVD 173

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F+++ +  C+ D+ +Y  L+      G   +A E+++ ME+   S    TY  +I
Sbjct: 174 SALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLI 233

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L +S  LD AI L +EMK  +  P+   ++SL+D + K G    +M++   M    H 
Sbjct: 234 HGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHL 293

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y +LI    K  KL  A+ + D MRI G +PN GL+  II     +G    A + 
Sbjct: 294 PNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANF 353

Query: 433 FTDMERAGFLPTPSTYSCLLEMH-----ASSGQVD--SAMKLYNSMTSAGLRPGLSTYTA 485
             +M   G  P  +++S  + MH          VD   A +LY SM +  +   + T+  
Sbjct: 354 IDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDC 413

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           L+    KR  +  AA+IL EM   G   D    +V++
Sbjct: 414 LVKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVI 450



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 2/293 (0%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  T+ L+I  L    +   A  + + MK+     + +IF S+    G+  R   +++V+
Sbjct: 49  DHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDAIRVF 108

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +M+G   RP+   Y+++++   +   +  A+  + EMR  G   +     ++I++  K+
Sbjct: 109 HKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKN 168

Query: 424 GK-LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            + +D A+ IF +M   G  P   TY  L+      G +  A +L+  M   G    + T
Sbjct: 169 KETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVT 228

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMG 541
           YT+L+  L +   +D A  +L EMK      +V + S ++    K G    A++ L  M 
Sbjct: 229 YTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMD 288

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                 N      L     K      A  +L+       K +  LY  +++ L
Sbjct: 289 KKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGL 341



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 140/310 (45%), Gaps = 2/310 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D +++ ++++  +       A  + E M++ +C +    +  +     +  R   AI++F
Sbjct: 49  DHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDAIRVF 108

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +M+    RP+   + +++D + +   +  ++  Y EM+  G   S      LI++  K 
Sbjct: 109 HKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKN 168

Query: 389 GK-LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            + +D+ALR++ EM   G +P+   +  +I    + G +  A  +F +ME+ GF  +  T
Sbjct: 169 KETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVT 228

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+     S  +D A+ L   M    + P + TY++L+  L K      A ++L  M 
Sbjct: 229 YTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMD 288

Query: 508 TMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
              +  + V+ S ++    K+  +  A+  L  M   G++ N  +  ++         Y+
Sbjct: 289 KKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQ 348

Query: 567 SAKPLLETYV 576
            A   ++  V
Sbjct: 349 EAANFIDEMV 358


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 162/355 (45%), Gaps = 1/355 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N+++    K ++ +M++  + ++   + +    ++N+++ +   +G   KA E    ME 
Sbjct: 185 NQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMET 244

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                +  TY  +I      G+   A  +FQ MK++   P    + S +  + K GRL+ 
Sbjct: 245 LGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEE 304

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  +  +M   G  P+A  Y +LI+ Y   G LD A    DEM   G   +   + + I 
Sbjct: 305 ASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIH 364

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +    G++  A ++  +M   G +P   T++ L+  +   G    A  L + M   G++P
Sbjct: 365 ALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQP 424

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWL 537
            L TYT+L+ +L KR  +  A  +  +++  G   D+   + L+  +  +G++D A + L
Sbjct: 425 TLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLL 484

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           + M +  +  +      L +   +    E A+ LL+       K D + Y ++++
Sbjct: 485 KEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLIS 539



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 153/364 (42%), Gaps = 1/364 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I       K + +   F+ + D   + D  +YN  ++    +G   +A  +   M
Sbjct: 253 TYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKM 312

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +G    +  TY  +I      G LD A     EM  +    S   +   + ++   GR+
Sbjct: 313 LEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRM 372

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  +  EM+  G  P A  +  LI  Y + G    A  L DEM   G +P    +T +
Sbjct: 373 GDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSL 432

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K  ++  A ++F+ +++ G LP    ++ L++ H ++G +D A +L   M +  +
Sbjct: 433 IYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKV 492

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P   TY  L+    +   V+ A ++L EMK  G   D +S + ++  Y K G +  A R
Sbjct: 493 LPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFR 552

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M ++G          L +   KN   E A+ LL+  V      D   Y S++  + 
Sbjct: 553 VRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAME 612

Query: 596 RCQD 599
              D
Sbjct: 613 TVDD 616



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 132/323 (40%), Gaps = 1/323 (0%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           T  +++L+  +     P +A E +  +++     +  T   M+    K  R   A  L+ 
Sbjct: 146 TLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYA 205

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EM   N R S   F  +++ + K G+L  + +    M+  G +P+   Y ++I  +   G
Sbjct: 206 EMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRG 265

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           K   A  ++  M+  G  P+   +   I    K G+L+ A  +   M   G +P   TY+
Sbjct: 266 KFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYN 325

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L++ + + G +D A    + M S G+   L TY   +  L     +  A  ++ EM+  
Sbjct: 326 ALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREK 385

Query: 510 GYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G   D    ++L+  Y + G    A   L  M   GI+        L     K    + A
Sbjct: 386 GMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEA 445

Query: 569 KPLLETYVESAAKVDLVLYTSVL 591
             L     +     D++++ +++
Sbjct: 446 DALFSKIQQEGLLPDIIVFNALI 468



 Score = 47.8 bits (112), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 38/239 (15%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+   +P    + +L +      D      L DEMV    K        Y  +I  L K 
Sbjct: 383 REKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMV---GKGIQPTLVTYTSLIYVLGKR 439

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
           ++++ +   F K+       D   +N L+      G   +AF++ + M+  +   D  TY
Sbjct: 440 NRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITY 499

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++    + G+++ A +L  EMK R  +P    + +L+    K G +  + +V  EM  
Sbjct: 500 NTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMT 559

Query: 369 CGHRPSA-----------------------------------PMYVSLIESYAKAGKLD 392
            G  P+                                      Y+S+IE+      L+
Sbjct: 560 TGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDDLE 618


>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 484

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 197/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L   N S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSNTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+ +G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGSGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E    +GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIEKFCKAGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGLS------TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P  +       Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPNAYNPMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 132/254 (51%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN LM      G    A +++ES+      L+  +Y ++I    K  ++D A +LF
Sbjct: 285 DILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLF 344

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM+ +  +PS   + +L+ ++ ++GR+ T+ K+++EMQ CG       Y  L++   K 
Sbjct: 345 EEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 404

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+ A+ L+  ++    +PN  +F+++++   ++GKL+ A   F ++ + G  P    Y
Sbjct: 405 GHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAY 464

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+    + G +  A+KL   M   G  P   T+  ++  L K   +  A ++L EM+ 
Sbjct: 465 NILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRN 524

Query: 509 MGYSVDVSASDVLM 522
             +S D + + +L+
Sbjct: 525 RNFSPDEAVTSMLL 538



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 197/455 (43%), Gaps = 17/455 (3%)

Query: 157 KLQFVPKMVHITQALKVI---NDSDTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRD 212
           K  F P  V +T  +K +   N    ++ LF     +  +  GD + Y +L + L ++R 
Sbjct: 70  KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLF--GDAKTYGILINGLCKARK 127

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
               + L ++M  +   +   +F+ Y  +I  L K      +   F +++ +    D   
Sbjct: 128 TGLAIKLHEKMKGNCKGD---VFT-YGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVV 183

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y+ LM      G   +A E ++ ME    S D  TY  +I  L+++G           M 
Sbjct: 184 YSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMV 243

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +R F P    F  L+D + K G++  + ++   M   G  P    Y +L+      G+L+
Sbjct: 244 DRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLE 303

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A +L++ +   G + N   + ++I  + K  K+D A  +F +M   G  P+  TY+ L+
Sbjct: 304 DATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLI 363

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
                SG+V +A KL+  M + G    LSTY  LL  L K   ++ A  +   +K   + 
Sbjct: 364 GALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHK 423

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKP 570
            ++    +L+    + G ++ A +    +  +G+  +      L    C K  L E+ K 
Sbjct: 424 PNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVK- 482

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
           LL    E     D + +  ++ +L++    +NE H
Sbjct: 483 LLWQMEEKGCLPDSITFNVIIQNLLK----ENEIH 513



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 128/268 (47%), Gaps = 2/268 (0%)

Query: 222 EMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           E++H   K    L   YN ++  L    +LE +   F+ + D   K++  SYN+L+  + 
Sbjct: 275 ELMHHKGKEPDIL--TYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYC 332

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
                 +AF ++E M          TY  +I +L +SGR+  A KLF EM+        +
Sbjct: 333 KDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLS 392

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            +  L+D + K G L+ ++ ++  ++   H+P+  ++  L++   +AGKL+ A + +DE+
Sbjct: 393 TYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 452

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G  P+   + ++I      G L  A+ +   ME  G LP   T++ +++      ++
Sbjct: 453 SKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEI 512

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             A++L   M +    P  +  + LL L
Sbjct: 513 HEAIQLLEEMRNRNFSPDEAVTSMLLCL 540



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 1/271 (0%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMS 254
           G E  ++ ++ L       G L    ++    +  GI L   +YN +I    K  K++ +
Sbjct: 281 GKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEA 340

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +  F+++     K  T +YN L+      G    A +++  M+     L  STY +++  
Sbjct: 341 FRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDG 400

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+G L+ AI LFQ +K+   +P+  +F+ L+D M +AG+L+ + K + E+   G  P 
Sbjct: 401 LCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPD 460

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI      G L  A++L  +M   G  P+   F +II++  K  ++  A+ +  
Sbjct: 461 TIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLE 520

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
           +M    F P  +  S LL + +   Q  +A+
Sbjct: 521 EMRNRNFSPDEAVTSMLLCLASFDPQWHAAL 551


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 122/501 (24%), Positives = 213/501 (42%), Gaps = 27/501 (5%)

Query: 100 GSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQ 159
           G V+ TG GI        D +M+  + +    A   A+ +++         L  ++  L 
Sbjct: 132 GQVLKTGLGI--------DTIMISNLLRGLCEAKRTAEALDI---------LLHRMPHLG 174

Query: 160 FVPKMVHITQALKVI---NDSDTSLSLFRW-AKRQSWYVPGDECYVMLFDVLNESRDFDG 215
            VP +      LK +     S  +  L R  A+  +  +P    Y  + D   +  D + 
Sbjct: 175 CVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNK 234

Query: 216 MLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
              LF+EMV    + GIS   S YN V+  L KA  ++ +    ++++D     D  +YN
Sbjct: 235 ACDLFNEMV----QRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYN 290

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            L+  + + G   +A  + + M       D  T   ++ SL K G++  A  +F  M  +
Sbjct: 291 SLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMK 350

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
             +     +  +++     G L    +++  M   G  P + ++  LI++YAK G LD A
Sbjct: 351 GQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRA 410

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             +++EMR  G  P+   ++ +I +  + GK+D A+  F  M   G  P+ STY  L++ 
Sbjct: 411 TIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQG 470

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
             + G +  A  L   M + G+RP +  +  ++  L K   V  A  I     ++G   +
Sbjct: 471 FCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPN 530

Query: 515 VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           V   + LM  Y   G +++ALR    M S+GI+ N  +   L     K    +    L  
Sbjct: 531 VMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFR 590

Query: 574 TYVESAAKVDLVLYTSVLAHL 594
             +    K    LY  +L  L
Sbjct: 591 EILHKGIKPSTTLYNIILHGL 611



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 170/374 (45%), Gaps = 1/374 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++  L K  K++ +   F  +     K D  SY +++  +  KG      E++  M  
Sbjct: 325 NSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLS 384

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              + D   + ++I + AK G LD A  +F EM+E+   P    +++++ ++ + G++D 
Sbjct: 385 DGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDD 444

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +++ + +M   G  PS   Y  LI+ +   G L  A  L  +M   G RP+ G F  II 
Sbjct: 445 AVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIIN 504

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +  K G++  A +IF      G  P    Y+ L++ +   G++++A+++++ M SAG++P
Sbjct: 505 NLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQP 564

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWL 537
            +  Y  L+    K   +D    +  E+   G     +  ++++    + G    A    
Sbjct: 565 NVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKF 624

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             M  SGI  + +    +     KN+  + A  L +       K+D+     ++A + + 
Sbjct: 625 HEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQI 684

Query: 598 QDEQNERHLMAILS 611
           +  +  + L A +S
Sbjct: 685 RRVEEAKDLFASIS 698



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 177/390 (45%), Gaps = 9/390 (2%)

Query: 216 MLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           +  LF+ M+ D    GI+  S  +N +I+  AK   L+ +   F ++ +   + D  +Y+
Sbjct: 375 LTELFNLMLSD----GIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYS 430

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            ++      G    A E +  M     +   STY  +I      G L  A  L  +M  +
Sbjct: 431 TVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNK 490

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
             RP    F  +++++ K GR+  +  ++      G  P+  +Y +L++ Y   GK++ A
Sbjct: 491 GMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENA 550

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           LR++D M  AG +PN  ++  ++  + K G++D  +S+F ++   G  P+ + Y+ +L  
Sbjct: 551 LRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHG 610

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +G+   A   ++ MT +G+     TY+ +L  L K    D A  +  E+  M   +D
Sbjct: 611 LFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKID 670

Query: 515 VSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           ++  ++++    +   V+ A      +  SG+  +      +  + +K  L E A  +  
Sbjct: 671 ITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFS 730

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
           +   +  +      + +L H+VR   E+ E
Sbjct: 731 SMENAGCEQP---NSQLLNHVVRELLEKRE 757


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 153/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTREHKFWVPIDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 387 ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 143/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 250

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSV 310

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A    + M    IR +      L     +      
Sbjct: 311 KGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVD 370

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 371 AEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 139/306 (45%), Gaps = 1/306 (0%)

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
           +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++++ K 
Sbjct: 112 KVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKW 171

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
                  +Y  ++    + G LD   +L   M     +P    ++ L++ + K  ++D +
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 231

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            +++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   +  +I  
Sbjct: 232 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 291

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L  A  +  +M   G  P   TY+ L++     G +DSA +    M    +R  
Sbjct: 292 LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLR 538
              YTAL++ L +      A K+L EM ++G   D  + + ++  + K G V    + L+
Sbjct: 352 EVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 411

Query: 539 FMGSSG 544
            M   G
Sbjct: 412 EMQRDG 417


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +     RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 172/378 (45%), Gaps = 5/378 (1%)

Query: 230 NGI-SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           NGI S    +N +I   ++      S+  F  +L    + +  +   L+     KG  ++
Sbjct: 85  NGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQ 144

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A   ++ +      L+   Y  +I  L K G+  AA++L + +  +  +P+  ++ +++D
Sbjct: 145 ALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIID 204

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
           SM K   ++ +  +Y EM   G  P    Y +LI  +   GKL+ A+ L+++M      P
Sbjct: 205 SMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINP 264

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +   F+++++   K G++  A ++   M + G  P   TY  L++ +    QV+ A  ++
Sbjct: 265 DVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIF 324

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KD 527
           N+M   G+   + +Y  ++    K K VD A  +  EM       DV   + L+  + K 
Sbjct: 325 NTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKS 384

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           G + +AL+ +  M   G+  +      + ++  KN   + A  LL    +   + D+  Y
Sbjct: 385 GKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTY 444

Query: 588 TSVLAHLV---RCQDEQN 602
           T ++  L    R +D QN
Sbjct: 445 TILIDGLCKGGRLKDAQN 462



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 145/337 (43%), Gaps = 1/337 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  L K  +   +    ++V     + +   YN ++       L  +AF++Y  M
Sbjct: 163 CYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 222

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I      G+L+ AI LF +M      P    F+ LVD   K GR+
Sbjct: 223 VSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRV 282

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  V   M   G +P    Y SL++ Y    +++ A  +++ M   G   N   + ++
Sbjct: 283 KEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIM 342

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K  K+D AM++F +M     +P   TY+ L++    SG++  A+KL + M   G+
Sbjct: 343 INGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGV 402

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
                TY ++L  L K   VD A  +L +MK  G   D+    +L+  + K G +  A  
Sbjct: 403 PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQN 462

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
               +   G     +    + +    N L++ A  LL
Sbjct: 463 IFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALL 499



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 144/294 (48%), Gaps = 3/294 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + LF++M+ +     +  FS    ++    K  +++ +      ++    K D  +Y  L
Sbjct: 251 IGLFNKMISEEINPDVYTFSI---LVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSL 307

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +       KA  I+ +M +G  + +  +Y +MI    K  ++D A+ LF+EM  +N 
Sbjct: 308 MDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNI 367

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + SL+D + K+G++  ++K+  EM   G       Y S++++  K  ++D A+ 
Sbjct: 368 IPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 427

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +M+  G +P+   +T++I+   K G+L  A +IF D+   G+  T  TY+ +++   
Sbjct: 428 LLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFC 487

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            +   D A+ L + M   G  P   TY  ++  L ++   D+A K+L EM   G
Sbjct: 488 DNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARG 541



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 181/421 (42%), Gaps = 29/421 (6%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI--------- 268
           SL+ ++ H    +  SL S++NR++         E     F K+L S  KI         
Sbjct: 24  SLYSQLHHHHQDDEHSLVSSFNRILNINPTPPIFE-----FGKILGSLVKINCYQTAISL 78

Query: 269 -----------DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
                      D  ++N+L+  F   G  + +F ++ ++ K     +  T   +I  L  
Sbjct: 79  HREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCL 138

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G++  A+    ++    F  +   + +L++ + K G+   ++++   + G   +P+  M
Sbjct: 139 KGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVM 198

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y ++I+S  K   ++ A  L+ EM   G  P+   ++ +I      GKL+ A+ +F  M 
Sbjct: 199 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMI 258

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
                P   T+S L++     G+V  A  +   M   G++P + TY +L+      K V+
Sbjct: 259 SEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVN 318

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  I   M   G + +V + ++++  + K   VD A+   + M    I  +      L 
Sbjct: 319 KAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLI 378

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616
           +   K+     A  L++   +     D + Y S+L  L  C++ Q ++ + A+L+  K +
Sbjct: 379 DGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDAL--CKNHQVDKAI-ALLTKMKDE 435

Query: 617 A 617
            
Sbjct: 436 G 436



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 108/226 (47%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           + QSYN+++  F       +A  +++ M       D  TY  +I  L KSG++  A+KL 
Sbjct: 335 NVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLV 394

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM +R        + S++D++ K  ++D ++ +  +M+  G +P    Y  LI+   K 
Sbjct: 395 DEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKG 454

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+L  A  +++++ + G+      +T++I+    +   D A+++ + ME  G +P   TY
Sbjct: 455 GRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTY 514

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
             ++       + D A KL   M + GL  G      L T   +R+
Sbjct: 515 EIIILSLFEKDENDMAEKLLREMIARGLLFGWKKAYCLFTRFFQRR 560



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 20/283 (7%)

Query: 218 SLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           S+F+ M    ++ G++    +YN +I    K  K++ +   FK++   +   D  +YN L
Sbjct: 322 SIFNTM----AQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSL 377

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +      G    A ++ + M       D  TY  ++ +L K+ ++D AI L  +MK+   
Sbjct: 378 IDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGI 437

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P    +  L+D + K GRL  +  ++ ++   G+  +   Y  +I+ +      D AL 
Sbjct: 438 QPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALA 497

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL----- 451
           L  +M   G  PN   + +II S  +  + D+A  +  +M   G L       CL     
Sbjct: 498 LLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLLFGWKKAYCLFTRFF 557

Query: 452 ---------LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
                    LE+ +  G +D     +   + + L  GLS Y+A
Sbjct: 558 QRRSNLYPPLEVRSGHGSIDLGKVEHGPESKSELLKGLS-YSA 599


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 153/326 (46%), Gaps = 7/326 (2%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           T ++N+++    + G P +A E+   M +     +  TY  +I      GR+ AA+ + +
Sbjct: 41  TTTFNIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMR 96

Query: 330 EMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAK 387
           EM+ER    P+   + +++    K GR+D ++KV+ EM   G  +P A MY +LI  Y  
Sbjct: 97  EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 156

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            GKLDTAL   D M   G       + +++ +    G+   A  +  +M   G  P   T
Sbjct: 157 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 216

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+  H   G V  A++++ +M+  G+R  + TYT+L+  L+K+  V    K+  E  
Sbjct: 217 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAV 276

Query: 508 TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G   D+   + L+  +   G++D A   +  M    I  ++     L          +
Sbjct: 277 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 336

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLA 592
            A+ L++   +   + DLV Y ++++
Sbjct: 337 EARKLIDEMTKRGIQPDLVTYNTLIS 362



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 153/337 (45%), Gaps = 2/337 (0%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L + R  + +    P    Y  +     +    D  + +FDEM+        ++   YN
Sbjct: 91  ALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM--YN 148

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I       KL+ +     ++++    +   +YN+L+      G   +A+E+ E M   
Sbjct: 149 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 208

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             + D  TY ++I    K G +  A+++F+ M  R  R +   + SL+ ++ K G++  +
Sbjct: 209 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQET 268

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            K++ E    G RP   +Y +LI S++ +G +D A  +  EM      P+   +  ++  
Sbjct: 269 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRG 328

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
               G++D A  +  +M + G  P   TY+ L+  ++  G V  A+++ N M + G  P 
Sbjct: 329 LCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPT 388

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           L TY AL+  L K    D A  ++ EM   G + D S
Sbjct: 389 LLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 425



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 5/276 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
            D  L   D MV    + G+++  + YN ++  L    +   +Y   +++       D  
Sbjct: 160 LDTALLYRDRMV----ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 215

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN+L+     +G   KA EI+E+M +        TY  +I +L+K G++    KLF E 
Sbjct: 216 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEA 275

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             R  RP   ++ +L++S   +G +D + ++  EM+     P    Y +L+      G++
Sbjct: 276 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 335

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D A +L DEM   G +P+   +  +I  ++  G +  A+ I  +M   GF PT  TY+ L
Sbjct: 336 DEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 395

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           ++    +GQ D A  +   M   G+ P  STY +L+
Sbjct: 396 IQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 431


>gi|125558386|gb|EAZ03922.1| hypothetical protein OsI_26055 [Oryza sativa Indica Group]
          Length = 658

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 135/268 (50%)

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
           I   +Y +++      G P++   ++E M K  C+ + + Y  +I S+ K GR   A+ L
Sbjct: 329 IPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMAL 388

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F+ MK+   +     +  +V+ + + G+LD ++  +   Q  G   +A  Y SLI+ + K
Sbjct: 389 FERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGK 448

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           AG +D +  L++EM   GF P+   + ++I+  AKSG++D A +++  ME  G   T  T
Sbjct: 449 AGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYT 508

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L++      + + A+K +++M   G+ P  + +  L + L        A +IL E+ 
Sbjct: 509 YTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELA 568

Query: 508 TMGYSVDVSASDVLMVYIKDGSVDHALR 535
            MG   + +  D++ V  K G    A +
Sbjct: 569 PMGVIPETAHEDMINVLCKAGRFKQACK 596



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 137/315 (43%), Gaps = 2/315 (0%)

Query: 188 KRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247
           + Q+   P    Y+ L         F   + LF EM      N I    AY  VI  L K
Sbjct: 285 QEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQH-AYVLVIGALCK 343

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
             K       F+++L   C  +   Y  L+      G   +A  ++E M+     LD  T
Sbjct: 344 DGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVT 403

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y +++  L + G+LD A+  F+  +E+    +   + SL+D  GKAG +D S +++ EM 
Sbjct: 404 YGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMI 463

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P +  Y  LI+  AK+G++D A  L+  M   G       +T++I+   K  K +
Sbjct: 464 AKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNE 523

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+  +  M   G  PT + +  L      SG+   A ++ + +   G+ P  + +  ++
Sbjct: 524 EALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIPE-TAHEDMI 582

Query: 488 TLLAKRKLVDVAAKI 502
            +L K      A K+
Sbjct: 583 NVLCKAGRFKQACKL 597



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 7/300 (2%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           L  S+   +I SLA  G  +  +  ++ M+     PS  I+  L+D +  AG LDT++ V
Sbjct: 185 LTPSSSASLIRSLAALGLAEELLWAWKAMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNV 244

Query: 363 YMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMR-IAGFRPNFGLFTMIIESH 420
           +  M      RP    Y  LI+ Y +AG+   A+    EM+  A   P+   +  +++ H
Sbjct: 245 FDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCH 304

Query: 421 AKSGKLDIAMSIFTDMERAGF---LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              G   + + +F +ME  G    +P    Y  ++      G+    M ++  M   G  
Sbjct: 305 YSEGTFPVCIGLFQEMEERGMGNDIPQ-HAYVLVIGALCKDGKPFEGMAVFERMLKRGCA 363

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
              + YTAL+  + K      A  +   MK  G  +D V+   ++    + G +D A+  
Sbjct: 364 ANAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVAC 423

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            R     GI  N      L +   K  + + +K L E  +      D   Y  ++  L +
Sbjct: 424 FRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAK 483


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 192/434 (44%), Gaps = 40/434 (9%)

Query: 200 YVMLFDVLNE-SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y ++ DV  +  R +  +L + DEM     K     F+  + V+   A+   L  +   F
Sbjct: 248 YNVILDVFGKMGRSWRKILGVLDEMRSKGLK--FDEFTC-STVLSACAREGLLREAKEFF 304

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++     +  T +YN L+ +F   G+  +A  + + ME+  C  D  TY  ++ +  ++
Sbjct: 305 AELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRA 364

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G    A  + + M ++   P+   + +++D+ GKAG+ D ++K++  M+  G  P+   Y
Sbjct: 365 GFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTY 424

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +++    K  + +  +++  +M+  G  PN   +  ++      G       +F +M+ 
Sbjct: 425 NAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKS 484

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            GF P   T++ L+  +   G    A K+Y  MT AG    ++TY ALL  LA++     
Sbjct: 485 CGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRS 544

Query: 499 AAKILLEMKTMGYS-VDVSASDVLMVYIKDGS------VDHALR-------WL------- 537
              ++ +MK+ G+   + S S +L  Y K G+      +++ ++       W+       
Sbjct: 545 GENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLL 604

Query: 538 -----RFMGSS----------GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
                R +  S          G + +  I   +     +N +Y+ A+ +LE+  E     
Sbjct: 605 ANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSP 664

Query: 583 DLVLYTSVLAHLVR 596
           DLV Y S++   VR
Sbjct: 665 DLVTYNSLMDMYVR 678



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYES 295
           AY  ++   ++  K E +   F+++ +        +YNV++ +F   G  + K   + + 
Sbjct: 212 AYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDE 271

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M       D  T   ++ + A+ G L  A + F E+K   + P    + +L+   GKAG 
Sbjct: 272 MRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGV 331

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              ++ V  EM+       +  Y  L+ +Y +AG    A  + + M   G  PN   +T 
Sbjct: 332 YTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTT 391

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+++ K+GK D A+ +F  M+ AG +P   TY+ +L +     + +  +K+   M S G
Sbjct: 392 VIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNG 451

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS 529
             P  +T+  +L L   + +     ++  EMK+ G+  D    + L+  Y + GS
Sbjct: 452 CSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 506



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 164/387 (42%), Gaps = 37/387 (9%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K+D Q   + + +   +     A ++ + +   E  LD   Y  ++ + +++G+ + AI 
Sbjct: 172 KLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAID 231

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGR------------------------------- 355
           LF+ MKE    P+   +  ++D  GK GR                               
Sbjct: 232 LFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSAC 291

Query: 356 -----LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
                L  + + + E++ CG+ P    Y +L++ + KAG    AL +  EM       + 
Sbjct: 292 AREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADS 351

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +  ++ ++ ++G    A  +   M + G +P   TY+ +++ +  +G+ D A+KL+ S
Sbjct: 352 VTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYS 411

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV 530
           M  AG  P   TY A+L+LL K+   +   K+L +MK+ G S + +  + ++    +  +
Sbjct: 412 MKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGM 471

Query: 531 DHAL-RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           D  + R  R M S G   +      L  +  +      A  +      +     +  Y +
Sbjct: 472 DKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNA 531

Query: 590 VLAHLVRCQDEQNERHLMAILSATKHK 616
           +L  L R  D ++  ++++ + +   K
Sbjct: 532 LLNALARKGDWRSGENVISDMKSKGFK 558



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/352 (19%), Positives = 136/352 (38%), Gaps = 38/352 (10%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y  + D   ++   D  L LF  M        +     YN V+  L K  +   
Sbjct: 383 MPNAITYTTVIDAYGKAGKEDEALKLFYSM---KEAGCVPNTCTYNAVLSLLGKKSRSNE 439

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
                  +  + C  +  ++N ++ L  NKG+      ++  M+      D  T+  +I 
Sbjct: 440 MIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLIS 499

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +  + G    A K++ EM    F      + +L++++ + G   +   V  +M+  G +P
Sbjct: 500 AYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKP 559

Query: 374 SAPMYVSLIESYAKAGK-----------------------------------LDTALRLW 398
           +   Y  +++ YAK G                                    L  + R +
Sbjct: 560 TETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAF 619

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
              +  G++P+  +F  ++    ++   D A  I   +   G  P   TY+ L++M+   
Sbjct: 620 TLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRR 679

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           G+   A ++  ++  + L+P L +Y  ++    +R L+  A ++L EM   G
Sbjct: 680 GECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERG 731



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/347 (17%), Positives = 144/347 (41%), Gaps = 41/347 (11%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L LF ++ +++  VP    Y  +  +L +    + M+    +M+ D   NG S   A
Sbjct: 403 DEALKLF-YSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMI----KMLCDMKSNGCSPNRA 457

Query: 238 -YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++         +     F+++     + D  ++N L++ +   G    A ++Y  M
Sbjct: 458 TWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEM 517

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR- 355
            +   +   +TY  ++ +LA+ G   +   +  +MK + F+P+   ++ ++    K G  
Sbjct: 518 TRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNY 577

Query: 356 ----------------------------------LDTSMKVYMEMQGCGHRPSAPMYVSL 381
                                             L  S + +   +  G++P   ++ S+
Sbjct: 578 LGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSM 637

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           +  + +    D A  + + +R  G  P+   +  +++ + + G+   A  I   +E++  
Sbjct: 638 LSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQL 697

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
            P   +Y+ +++     G +  A+++ + MT  G+RP + TY   ++
Sbjct: 698 KPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVS 744



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 8/176 (4%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N ++    + +  + +    + + +     D  +YN LM +++ +G  +KA EI +++E
Sbjct: 634 FNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLE 693

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP---SFNIFASLVDSMGKAG 354
           K +   D  +Y  +I    + G +  A+++  EM ER  RP   ++N F S   +MG   
Sbjct: 694 KSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFA 753

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            ++  ++  M    C  RP+   +  +++ Y +AGK   A+      +I  F P F
Sbjct: 754 EIEDVIEC-MAKNDC--RPNELTFKMVVDGYCRAGKYSEAMDFVS--KIKTFDPCF 804



 Score = 45.8 bits (107), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/163 (18%), Positives = 66/163 (40%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L  + + F   K+  ++P   IF S++    +    D +  +   ++  G  P    Y S
Sbjct: 612 LAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNS 671

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++ Y + G+   A  +   +  +  +P+   +  +I+   + G +  A+ + ++M   G
Sbjct: 672 LMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERG 731

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
             P   TY+  +  + + G       +   M     RP   T+
Sbjct: 732 IRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTF 774


>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 706

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 171/378 (45%), Gaps = 20/378 (5%)

Query: 162 PKMVHITQALKVINDSD----------------TSLSLFRWAKRQSWYVPGDECYVMLFD 205
           P   H+++ LKV+ DS                 T+L    + K++   V     Y +   
Sbjct: 130 PTQEHVSEILKVLGDSVLEPDAVFILNSMVNPYTALLAVEYFKQKVKSVRHVILYNVTLK 189

Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
           +  + +DF+G   LFDEM+H      +  FS    +I   +       +   F+ +    
Sbjct: 190 LFRKVKDFEGAEKLFDEMLHRGVNPNLITFST---MISCASVCSLPHKAVKWFEMMPSFG 246

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C+ D    + ++  +   G    A  +Y+  + G+  +D + +  +I     SG     +
Sbjct: 247 CEPDNNVCSSMIYAYTRTGNTDMALRLYDRAKAGKWHVDTAVFSGLIKMYGVSGNYVGCL 306

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            ++ +MK    +P+   + +L+ +MG+A R   +  +Y EM   G  P+ P Y +L+++Y
Sbjct: 307 NVYNDMKVLGAKPNLTTYNALLYAMGRAKRARDAKAIYGEMISNGLSPNWPTYAALLQAY 366

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            +A     AL ++ EM+  G   +  L+ M+ +  A  G +D A+ IF  M+ +G  P  
Sbjct: 367 CRARFNRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHMKSSGTCPPD 426

Query: 446 S-TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
           S TY+ L+ M++S G++     ++N M  +G  P +   T+L+    K K  D   KI  
Sbjct: 427 SFTYASLINMYSSIGKILEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFN 486

Query: 505 EMKTMGYSVDVSASDVLM 522
           ++  +G S D    D L+
Sbjct: 487 QLMDLGISPDGRFCDCLL 504



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/492 (23%), Positives = 196/492 (39%), Gaps = 40/492 (8%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y + +    K    + A KLF EM  R   P+   F++++           ++K +  M 
Sbjct: 184 YNVTLKLFRKVKDFEGAEKLFDEMLHRGVNPNLITFSTMISCASVCSLPHKAVKWFEMMP 243

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P   +  S+I +Y + G  D ALRL+D  +   +  +  +F+ +I+ +  SG   
Sbjct: 244 SFGCEPDNNVCSSMIYAYTRTGNTDMALRLYDRAKAGKWHVDTAVFSGLIKMYGVSGNYV 303

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             ++++ DM+  G  P  +TY+ LL     + +   A  +Y  M S GL P   TY ALL
Sbjct: 304 GCLNVYNDMKVLGAKPNLTTYNALLYAMGRAKRARDAKAIYGEMISNGLSPNWPTYAALL 363

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSG-- 544
               + +    A  +  EMK  G  +D+   ++L     + G VD A++    M SSG  
Sbjct: 364 QAYCRARFNRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHMKSSGTC 423

Query: 545 ----------IRTNNFIVRQLFESCMKNALYESA--------KPLLETYVESAAKVDLVL 586
                     I   + I + L    M N + ES           L+  Y ++    D+V 
Sbjct: 424 PPDSFTYASLINMYSSIGKILEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVK 483

Query: 587 YTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHG- 645
             + L  L    D +    L+  ++    +    L G       +   VL ++ E   G 
Sbjct: 484 IFNQLMDLGISPDGRFCDCLLYAMTQVPKEELGKLSGCVEKANPKLGSVLRYIMEKQEGG 543

Query: 646 ---------IDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQ 696
                    +    E    +   N L++  V +   +RAR +  +    +++P  I    
Sbjct: 544 GDFRTEASELFNSTEADVKKSMCNCLIDLCVSLDVPDRARDLLDLGLTLEIYPD-IQSRS 602

Query: 697 HIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG--------PTLKIV 748
              WSL ++ LSVGAAL A+   +    K +     +P  + + TG          L  V
Sbjct: 603 QAKWSLHLKRLSVGAALTALSVWISDLSKALELGEELPPLLGINTGGGKHRFSDKVLPTV 662

Query: 749 IAQMLSSVESPF 760
               L  +++PF
Sbjct: 663 FESYLKELKAPF 674


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 179/404 (44%), Gaps = 8/404 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P   C   L   L   R F  M SL   M   + +   +L +AY       A    L  
Sbjct: 38  LPPLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHL-- 95

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
                  +L +    D+ +Y   +  +   G+   A  ++  M    C     TY  ++ 
Sbjct: 96  -----TSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLH 150

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L  +G +  A+ +F  M+  +  P  +++A++V  + +AGR + +  +  E    G  P
Sbjct: 151 GLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEP 210

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +  +Y +LI+ Y  AG+++ AL++++ M      PN   +T +I    KSGK++ AM +F
Sbjct: 211 NIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLF 270

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           + M  AG  P   TY+ L++   + G +  A +L + M + GL P   T++ L+  L KR
Sbjct: 271 SRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKR 330

Query: 494 KLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
           + V+ A   L  +   G  V +V  + ++    K G +D A   ++ M S G   +    
Sbjct: 331 EKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSY 390

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L +   +      A  +LE  +E   +   V YT ++  LVR
Sbjct: 391 SSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVR 434



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 144/318 (45%), Gaps = 1/318 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y  L+   L  G+  +A  ++  M    C+ D   Y  M+  L ++GR + A  L +E 
Sbjct: 144 TYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEA 203

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
               F P+  ++ +L+D    AG ++ ++KV+  M G    P+   Y  LI    K+GK+
Sbjct: 204 MSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV 263

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A+ L+  M  AG  PN   +T +I+     G L  A  +   ME  G +P   T+S L
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++      +V+ A     S+   G++     YT+L+  L K   +D A +++ +M + G+
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 512 SVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D  S S ++    +   +  A   L  M   GI+ +      + +  ++    E  K 
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443

Query: 571 LLETYVESAAKVDLVLYT 588
           + +  + +    D+V YT
Sbjct: 444 IFDKMIATGINPDIVTYT 461



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 142/331 (42%), Gaps = 1/331 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN L+  + N G    A +++E M+   CS +  TY  +I  L KSG+++ A+ LF  M 
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV 274

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           E    P+   + +L+      G L  + ++   M+  G  P+   +  LI++  K  K++
Sbjct: 275 EAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVE 334

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A      +   G + N  ++T +I+   K+GK+D A  +   M   GF+P   +YS L+
Sbjct: 335 EAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           +      ++  A  +   M   G++    TYT ++  L +    +   KI  +M   G +
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D+    V +  Y ++G ++ A   +  M   G+  N      L        L   A   
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
            E  V    K +   YT +L  +V+     N
Sbjct: 515 FEVMVGKGWKPNEDSYTVLLRLVVKKSSSDN 545



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 167/398 (41%), Gaps = 42/398 (10%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           + P    Y  L D    + + +  L +F+ M  +     +     Y  +I  L K+ K+E
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVR---TYTELIHGLCKSGKVE 264

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME--------------- 297
            +   F +++++  + +  +Y  L+    N+G    AF +   ME               
Sbjct: 265 RAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLI 324

Query: 298 --------------------KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                               K    ++   Y  +I  L K+G++DAA +L Q+M    F 
Sbjct: 325 DALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFV 384

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P  + ++SL+D + +  +L  +  +  +M   G + S   Y  +I+   +    +   ++
Sbjct: 385 PDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKI 444

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +D+M   G  P+   +T+ + S+ + G+++ A S+   M   G  P   TY+ L+  +A+
Sbjct: 445 FDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYAN 504

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI--LLEMKTMGYSVDV 515
            G V  A   +  M   G +P   +YT LL L+ K+   D +  I  + +MK +  S   
Sbjct: 505 LGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESNYD 564

Query: 516 SASDVLMVY--IKDGSVDHALRWLRFMGSSGIRTNNFI 551
                +++Y  ++ GSV      L  M   G + +N I
Sbjct: 565 EIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTI 602


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 155/362 (42%), Gaps = 1/362 (0%)

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
           +C  D  +YN ++     KG    A ++   M+      + +TY +++    K G L  A
Sbjct: 238 NCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEA 297

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
             + + M + N  P    +  L++ +   GR++ + K+  EM+     P    Y +LI  
Sbjct: 298 ANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLING 357

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
             +  K+  A +L +EM   G +PN     ++++ + K GK+D A +  T ME +GF P 
Sbjct: 358 CLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPD 417

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TY+ L+  +  +G +  A +  + M    ++    T   +L  L + K ++ A K+L 
Sbjct: 418 CVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLS 477

Query: 505 EMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
             +  GY +D VS   +++ Y KDG+VD AL+    M    I  +      +     +  
Sbjct: 478 SARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCG 537

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCG 623
             E A   L   +ES    D   Y ++L    R  D +        +     K   F C 
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCN 597

Query: 624 LF 625
           + 
Sbjct: 598 IL 599



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 158/352 (44%), Gaps = 4/352 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q+  +P    Y ML + L      +    L DEM    +   +    +YN +I    +  
Sbjct: 306 QNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEM---ENLKLLPDVVSYNTLINGCLEWS 362

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           K+  ++   +++ +   K +  ++N+++  +  +G    A      ME+   S D  TY 
Sbjct: 363 KISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYN 422

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I    K+G +  A +   EM  +N +       +++ ++ +  +L+ + K+    +  
Sbjct: 423 TLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKR 482

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G+      Y +LI  Y K G +D AL+LWDEM+     P+   +  II    + GK + A
Sbjct: 483 GYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQA 542

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           +S   ++  +G LP  +TY+ +L  +   G V+ A + +N M     +P + T   LL  
Sbjct: 543 ISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRG 602

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFM 540
           L    +++ A K+     + G ++D    + L+  + K+G +D A   L  M
Sbjct: 603 LCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEM 654



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 148/363 (40%), Gaps = 36/363 (9%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN+L+    N+G   +AF++ + ME  +   D  +Y  +I    +  ++  A KL 
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLL 371

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM E+  +P+      +V    K G++D +     +M+  G  P    Y +LI  Y KA
Sbjct: 372 EEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKA 431

Query: 389 GKLDTALRLWDEM-----------------------------------RIAGFRPNFGLF 413
           G +  A R  DEM                                   R  G+  +   +
Sbjct: 432 GNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSY 491

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +I  + K G +D A+ ++ +M+    +P+  TY+C++      G+ + A+   N +  
Sbjct: 492 GTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLE 551

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDH 532
           +GL P  +TY  +L    +   V+ A +   +M    +  DV   ++L+  +  +G ++ 
Sbjct: 552 SGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEK 611

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           AL+      S G   +      L  S  K    + A  LL    E     D   Y +++ 
Sbjct: 612 ALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIIT 671

Query: 593 HLV 595
            L 
Sbjct: 672 ALT 674



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/352 (19%), Positives = 148/352 (42%), Gaps = 39/352 (11%)

Query: 280 FLNKGLPYKAFEIYESMEKGE-------CSL----------------------------- 303
           ++  G P+ AF+I++ M++         C+                              
Sbjct: 145 YVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGI 204

Query: 304 --DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
             + +T+ ++I       +   A++    M + N  P    + +++D++ K GRL  +  
Sbjct: 205 VPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARD 264

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           + M+M+  G  P+   Y  L+  Y K G L  A  + + M      P+   + M+I    
Sbjct: 265 LLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLC 324

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
             G+++ A  +  +ME    LP   +Y+ L+       ++  A KL   M+  G++P   
Sbjct: 325 NEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAV 384

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFM 540
           T+  ++    K   +D A+  + +M+  G+S D V+ + ++  Y K G++  A R +  M
Sbjct: 385 THNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEM 444

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           G   ++ ++  +  +  +  +    E A  LL +  +    +D V Y +++ 
Sbjct: 445 GRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIV 496



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 125/275 (45%), Gaps = 2/275 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN-VLMTLFLNKGLPYKAFEIYES 295
            YN +I    KA  +  ++    ++   + K+D+ + N +L TL   K L  +A+++  S
Sbjct: 420 TYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLE-EAYKLLSS 478

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
             K    +D  +Y  +I    K G +D A+KL+ EMKE+   PS   +  ++  + + G+
Sbjct: 479 ARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGK 538

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            + ++    E+   G  P    Y +++  Y + G ++ A +  ++M    F+P+     +
Sbjct: 539 TEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNI 598

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           ++      G L+ A+ +F      G      TY+ L+      G++D A  L + M    
Sbjct: 599 LLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKE 658

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L P   TY A++T L     +  A + + +M   G
Sbjct: 659 LGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 164/399 (41%), Gaps = 28/399 (7%)

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK---AGRLDTSMKVYMEMQG 368
           I +  +SG+   A ++F++MK    RP+     +L++S+ +   +  +  S + + +   
Sbjct: 142 IGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIK 201

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+   +  +I  Y    K   A+   + M      P+   +  I+++  K G+L  
Sbjct: 202 LGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGD 261

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +  DM+  G LP  +TY+ L+  +   G +  A  +   MT   L P + TY  L+ 
Sbjct: 262 ARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLIN 321

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRT 547
            L     ++ A K+  EM+ +    DV + + L+    + S +  A + L  M   G++ 
Sbjct: 322 GLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKP 381

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV---------LAHLVRCQ 598
           N      + +   K    + A   +    ES    D V Y ++         +    R  
Sbjct: 382 NAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTM 441

Query: 599 DEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGA--AR 656
           DE   ++ M + S T +     LC      E  K  +LS  R+  + ID E+  G     
Sbjct: 442 DEMGRKN-MKMDSVTLNTILRTLCREKKLEEAYK--LLSSARKRGYFID-EVSYGTLIVG 497

Query: 657 YFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFD 695
           YF +         G ++RA  +W    E ++ P  + ++
Sbjct: 498 YFKD---------GNVDRALKLWDEMKEKEIIPSTVTYN 527



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 117/283 (41%), Gaps = 15/283 (5%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           + D  L L+DEM     K  I     YN +I  L +  K E +     ++L+S    D  
Sbjct: 503 NVDRALKLWDEM---KEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDET 559

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN ++  +  +G   KAF+ +  M +     D  T  +++  L   G L+ A+KLF   
Sbjct: 560 TYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTW 619

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             +        + +L+ S+ K GRLD +  +  EM+     P    Y ++I +   +G++
Sbjct: 620 VSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRI 679

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A     +M   G  P   L            +LD   ++ T         +   YS  
Sbjct: 680 REAEEFMSKMLEKGXLPXQVL------------QLDXNETVVTSETSEESDSSSVAYSEW 727

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           ++   + G+   AM+++      G+    STY  L+  L KR+
Sbjct: 728 IKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRR 770



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 4/223 (1%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES---HAKSGKLDIA 429
           PS  +  + I +Y ++G+   A +++ +M+    RPN      ++ S   +  S  +  +
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
              F D  + G +P  +T++ ++  +    +   A++  N M      P   TY  +L  
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDA 252

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTN 548
           L K+  +  A  +L++MK+ G   + +  ++L+  Y K G +  A   +  M  + +  +
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPD 312

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +    L          E A  L +         D+V Y +++
Sbjct: 313 VWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLI 355


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 162/362 (44%), Gaps = 1/362 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++    K ++ E ++  + ++     K    ++N+++ +   +G   KA +    ME 
Sbjct: 190 NSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMET 249

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                +  TY  ++     SGR++AA  +   MK +   P    + SL+  M K GRL+ 
Sbjct: 250 SGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEE 309

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           + K++ EM   G RPSA +Y +LI+ +   G LD A    DEM   G  P    +  +I 
Sbjct: 310 ASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIH 369

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +     + D A  +  +++  G  P   TY+ L+  +        A  L++ M ++G++P
Sbjct: 370 ALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKP 429

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWL 537
              TYT+LL +L+K+  +  A  +  ++ + G   DV   + L+  +  + +V  A   L
Sbjct: 430 TKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELL 489

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
           + M    +  +      + +   +    E A+ L +       K D + + ++++   R 
Sbjct: 490 KDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRR 549

Query: 598 QD 599
            D
Sbjct: 550 GD 551



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 139/309 (44%), Gaps = 5/309 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKA 248
           Q    P    Y  L D      + D   +  DEM+    K GIS   S YN +I  L   
Sbjct: 319 QKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEML----KKGISPTMSTYNSLIHALFME 374

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            + + + C  K++ +     D  +YN+L+  +       KAF +++ M          TY
Sbjct: 375 QRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTY 434

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++  L+K  R+  A  LF+++      P   +F +L+D       +  + ++  +M  
Sbjct: 435 TSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDR 494

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
               P    + ++++ + + GK++ A  L+DEM+  G +P+   F  +I  +++ G +  
Sbjct: 495 MKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKD 554

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +  +M   GF PT  TY+ L++    + + D A +L   M S G+ P  +TY  L+ 
Sbjct: 555 AFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIE 614

Query: 489 LLAKRKLVD 497
            +AK  + D
Sbjct: 615 GIAKVNIPD 623



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 149/326 (45%), Gaps = 1/326 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  + K  +LE +   F++++    +     YN L+  F NKG    A    + M
Sbjct: 293 TYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEM 352

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K   S   STY  +I +L    R D A  + +E++E+   P    +  L++   +    
Sbjct: 353 LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANA 412

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++ EM   G +P+   Y SL+   +K  ++  A  L+ ++   G  P+  +F  +
Sbjct: 413 KKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNAL 472

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ H  +  +  A  +  DM+R    P   T++ +++ H   G+V+ A +L++ M   G+
Sbjct: 473 IDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGI 532

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +P   ++  L++  ++R  +  A ++  EM   G++  V   + L+  + K+   D A  
Sbjct: 533 KPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEE 592

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMK 561
            L+ M S G+  ++     L E   K
Sbjct: 593 LLKEMVSKGMTPDDTTYFTLIEGIAK 618


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 186/403 (46%), Gaps = 21/403 (5%)

Query: 166 HITQALKV-INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGML-SLFDEM 223
           H+  AL   +ND  ++L  F+ A+ Q  ++ G + Y +L  +L  S +  G    L +  
Sbjct: 102 HVIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKLLNRY 161

Query: 224 VHDSSKNGISLFSAY-------------NRVIQYL----AKADKLEMSYCCFKKVLDSDC 266
           V   S     +F  +             +RV  YL     +A+++E +  CF  ++  D 
Sbjct: 162 VSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDV 221

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
                  N+L+T  + + +  +  ++Y  M       D  T  +M+ +  K GR++ A +
Sbjct: 222 IPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEE 281

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
            F+E KER  +     ++ ++ ++ K    +  +++  EM+  G  PS   + S+I +  
Sbjct: 282 YFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACV 341

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
             G +  ALRL +EM   G   N  + T +++ +   G LD A+++F  +   G  P   
Sbjct: 342 AQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKV 401

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TYS L+E   +SG ++ A +LY  M   G+ P +    +LL    K  L + A+K+  E 
Sbjct: 402 TYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEA 461

Query: 507 KTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTN 548
              G + ++   +++M ++ K G +D A   L  M + G+  N
Sbjct: 462 VDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPN 503



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 172/389 (44%), Gaps = 4/389 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++   L +    D   SL D MV+   +  +    +YN +I    +   ++M+   F 
Sbjct: 472 YNIMMSWLCKGGKMDEACSLLDNMVN---QGMVPNVVSYNDMILGHCRKGNMDMASSVFS 528

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +L  D K +  +Y++L+     KG   KA ++++ M     +    T+  +I  L K G
Sbjct: 529 DMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVG 588

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           ++  A    +   E  F PS   + S+VD   K G +D+++ VY EM   G  P+   Y 
Sbjct: 589 QMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYT 648

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SLI  + K+ ++D AL+  DEMR  G   +   ++ +I+   K   ++ A  +F ++   
Sbjct: 649 SLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEV 708

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P    Y+ ++        +++A+  Y  M +  +   L TYT L+  L K   +  A
Sbjct: 709 GLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFA 768

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
           + + +EM + G   D+    VL+  +   G +++A + L  M    +  +  I   L   
Sbjct: 769 SDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAG 828

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLY 587
             +    + A  L +  ++     D V Y
Sbjct: 829 YFREGNLKEAFTLHDEMLDRGLVPDDVTY 857



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/465 (22%), Positives = 190/465 (40%), Gaps = 39/465 (8%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           I QA+    +S+  L L    K + W VP +  +  +        +    L L +EM++ 
Sbjct: 301 IIQAVCKKPNSNLGLELLEEMKERGW-VPSEATFTSVIVACVAQGNMVEALRLKEEMIN- 358

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
                ++L  A + +  Y A+ + L+ +   F K+ +     +  +Y+VL+    N G  
Sbjct: 359 -CGKPMNLVVATSLMKGYCAQGN-LDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNI 416

Query: 287 YKAFEIYESM---------------------------------EKGECSLDGS-TYELMI 312
            KA E+Y  M                                 E  +C +    TY +M+
Sbjct: 417 EKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMM 476

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L K G++D A  L   M  +   P+   +  ++    + G +D +  V+ +M     +
Sbjct: 477 SWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLK 536

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y  LI+   K G  + AL L+D+M      P    F  II    K G++  A   
Sbjct: 537 PNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDK 596

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
             +    GF+P+  TY+ +++     G +DSA+ +Y  M   G+ P + TYT+L+    K
Sbjct: 597 LKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCK 656

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
              +D+A K   EM+  G  +DV+A   L+  + K   ++ A      +   G+  N  +
Sbjct: 657 SNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIV 716

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +          E+A    +  +      DL  YT+++  L++
Sbjct: 717 YNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK 761



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 38/329 (11%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L D   +  D +  L LFD+M+   S N       +N +I  L K  ++  +
Sbjct: 537 PNVVTYSILIDGNFKKGDSEKALDLFDQML---SLNIAPTDFTFNTIINGLCKVGQMSEA 593

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               K  L+        +YN ++  F+ +G    A  +Y  M +   S +  TY  +I  
Sbjct: 594 RDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLING 653

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             KS R+D A+K   EM+E+        +++L+D   K   ++++  ++ E+   G  P+
Sbjct: 654 FCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPN 713

Query: 375 APMY-----------------------------------VSLIESYAKAGKLDTALRLWD 399
             +Y                                    +LI+   K G+L  A  L+ 
Sbjct: 714 RIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYM 773

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           EM   G  P+   F +++      G+L+ A  I  +M+R    P+   Y+ L+  +   G
Sbjct: 774 EMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREG 833

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
            +  A  L++ M   GL P   TY  L+ 
Sbjct: 834 NLKEAFTLHDEMLDRGLVPDDVTYDILIN 862



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 6/249 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
           D++L+++R    +    P    Y  L +   +S   D  L   DEM     + G+ L  +
Sbjct: 626 DSALAVYR-EMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEM----REKGLELDVT 680

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AY+ +I    K   +E +   F ++L+     +   YN +++ F +      A   Y+ M
Sbjct: 681 AYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKM 740

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I  L K GRL  A  L+ EM  +   P    F  LV+ +   G+L
Sbjct: 741 INDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQL 800

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + K+  EM      PS  +Y +LI  Y + G L  A  L DEM   G  P+   + ++
Sbjct: 801 ENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDIL 860

Query: 417 IESHAKSGK 425
           I    K  +
Sbjct: 861 INGKFKGDR 869



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 117/264 (44%), Gaps = 5/264 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH-DSSKNGISLFSAYNRVIQYLAKA 248
           +  ++P    Y  + D   +  + D  L+++ EM     S N ++    Y  +I    K+
Sbjct: 602 EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVT----YTSLINGFCKS 657

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
           ++++++     ++ +   ++D  +Y+ L+  F  +     A +++  + +   S +   Y
Sbjct: 658 NRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVY 717

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             MI        ++AA+  +++M           + +L+D + K GRL  +  +YMEM  
Sbjct: 718 NSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLS 777

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P    +  L+      G+L+ A ++ +EM      P+  ++  +I  + + G L  
Sbjct: 778 KGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKE 837

Query: 429 AMSIFTDMERAGFLPTPSTYSCLL 452
           A ++  +M   G +P   TY  L+
Sbjct: 838 AFTLHDEMLDRGLVPDDVTYDILI 861


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 172/363 (47%), Gaps = 8/363 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  V+  + K+ +  ++    +K+ + + K+D   Y++++      G    AF ++  M
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 289

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      D  TY  +I     +GR D   KL ++M +R   P+   F+ L+DS  K G+L
Sbjct: 290 EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKL 349

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++  EM   G  P+   Y SLI+ + K  +L+ A+++ D M   G  P+   F ++
Sbjct: 350 READQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNIL 409

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I  + K+ ++D  + +F +M   G +    TY+ L++    SG+++ A KL+  M S  +
Sbjct: 410 INGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV 469

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALR 535
           RP + +Y  LL  L     ++ A +I  +++     +D+    +++  + + S VD A  
Sbjct: 470 RPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWD 529

Query: 536 WLRFMGSSGI----RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               +   G+    R  N ++ +L   C K++L ++     +   E  A  +L     + 
Sbjct: 530 LFCSLPLKGVKLDARAYNIMISEL---CRKDSLSKADILFRKMTEEGHAPDELTYNILIR 586

Query: 592 AHL 594
           AHL
Sbjct: 587 AHL 589



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 143/319 (44%), Gaps = 4/319 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L L D MV    K         N ++  L    K+  +     +++++  + +  +Y  +
Sbjct: 178 LELVDRMVEMGHK---PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPV 234

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           + +    G    A E+   ME+    LD   Y ++I  L K G LD A  LF EM+ + F
Sbjct: 235 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF 294

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +     + +L+     AGR D   K+  +M      P+   +  LI+S+ K GKL  A +
Sbjct: 295 KADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQ 354

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  EM   G  PN   +  +I+   K  +L+ A+ +   M   G  P   T++ L+  + 
Sbjct: 355 LLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYC 414

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            + ++D  ++L+  M+  G+     TY  L+    +   ++VA K+  EM +     D+ 
Sbjct: 415 KANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIV 474

Query: 517 ASDVLMVYIKD-GSVDHAL 534
           +  +L+  + D G ++ AL
Sbjct: 475 SYKILLDGLCDNGELEKAL 493



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 135/296 (45%), Gaps = 1/296 (0%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFK 259
           V+ F VL +S   +G L   D+++ +  + GI+  +  YN +I    K ++LE +     
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVD 392

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++   C  D  ++N+L+  +          E++  M       +  TY  ++    +SG
Sbjct: 393 LMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSG 452

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +L+ A KLFQEM  R  RP    +  L+D +   G L+ +++++ +++         +Y+
Sbjct: 453 KLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYM 512

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            +I     A K+D A  L+  + + G + +   + ++I    +   L  A  +F  M   
Sbjct: 513 IIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEE 572

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           G  P   TY+ L+  H       +A +L   M S+G    +ST   ++ +L+  +L
Sbjct: 573 GHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGEL 628



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 182/425 (42%), Gaps = 12/425 (2%)

Query: 110 RSVEPGFD-DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHIT 168
           R VE GF  + V  G +      +   A  +E++ + +   E   +LD +++      I 
Sbjct: 218 RMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKME---ERNIKLDAVKYSI----II 270

Query: 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS 228
             L      D + +LF   + + +         ++    N  R  DG   L D +    S
Sbjct: 271 DGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKIS 330

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
            N ++    ++ +I    K  KL  +    K+++      +T +YN L+  F  +    +
Sbjct: 331 PNVVT----FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A ++ + M    C  D  T+ ++I    K+ R+D  ++LF+EM  R    +   + +LV 
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQ 446

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
              ++G+L+ + K++ EM     RP    Y  L++     G+L+ AL ++ ++  +    
Sbjct: 447 GFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMEL 506

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           + G++ +II     + K+D A  +F  +   G       Y+ ++        +  A  L+
Sbjct: 507 DIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILF 566

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG 528
             MT  G  P   TY  L+           AA+++ EMK+ G+  DVS   +++  +  G
Sbjct: 567 RKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSG 626

Query: 529 SVDHA 533
            +D +
Sbjct: 627 ELDKS 631



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 122/283 (43%), Gaps = 1/283 (0%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T  +MI    +  +L  A     ++ +  + P   IF +L++ +    R+  ++++   M
Sbjct: 125 TLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRM 184

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              GH+P+     +L+      GK+  A+ L D M   GF+PN   +  ++    KSG+ 
Sbjct: 185 VEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQT 244

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
            +AM +   ME          YS +++     G +D+A  L+N M   G +  + TY  L
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTL 304

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI 545
           +         D  AK+L +M     S +V    VL+  ++K+G +  A + L+ M   GI
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI 364

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
             N      L +   K    E A  +++  +      D++ + 
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN 407



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/430 (20%), Positives = 171/430 (39%), Gaps = 43/430 (10%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           D  + LF +M+       +     +NR+   +AK  + E+     K++          + 
Sbjct: 70  DDAVDLFRDMIQSRP---LPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTL 126

Query: 274 NVLMTLFLN-KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           ++++  F   + L Y AF     + K     D   +  ++  L    R+  A++L   M 
Sbjct: 127 SIMINCFCRCRKLSY-AFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           E   +P+     +LV+ +   G++  ++ +   M   G +P+   Y  ++    K+G+  
Sbjct: 186 EMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTA 245

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL---------- 442
            A+ L  +M     + +   +++II+   K G LD A ++F +ME  GF           
Sbjct: 246 LAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLI 305

Query: 443 -------------------------PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                                    P   T+S L++     G++  A +L   M   G+ 
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIA 365

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P   TY +L+    K   ++ A +++  M + G   D+   ++L+  Y K   +D  L  
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLEL 425

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            R M   G+  N      L +   ++   E AK L +  V    + D+V Y  +L  L  
Sbjct: 426 FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGL-- 483

Query: 597 CQDEQNERHL 606
           C + + E+ L
Sbjct: 484 CDNGELEKAL 493


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 183/431 (42%), Gaps = 30/431 (6%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK----------NGISLFSAYNRVIQY 244
           P    Y  + D L +++ FD    +F +M+ +  K          +G      +  V+Q 
Sbjct: 205 PNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQM 264

Query: 245 LAKADKLEMSYCCFK--KVLDSDCKI-----------------DTQSYNVLMTLFLNKGL 285
           L K     +   C+    +L+  C +                 D   +N+  + +   G+
Sbjct: 265 LEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGM 324

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             KA +I+  M +   S +   Y  +I +L K GR+D A   F +M      P+  +F S
Sbjct: 325 IDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNS 384

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           LV  +    + + + ++  EM   G  P+A  + +LI +    G++    RL D M   G
Sbjct: 385 LVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVG 444

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            RP+   +T +I  +  +G+ D A  +F  M   G  PT  TY+ LL  + S+ ++D A 
Sbjct: 445 VRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAY 504

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
            L+  M   G+ PG+ TY  +L  L + K    A ++ L M   G   D+   ++++  +
Sbjct: 505 CLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGL 564

Query: 526 -KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
            K   VD A +  + + S G++ N      +  + +K    E A  L      +    ++
Sbjct: 565 CKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNV 624

Query: 585 VLYTSVLAHLV 595
           V Y  V  +L+
Sbjct: 625 VTYRLVAENLI 635



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE---CSLDGSTYELMIPSLAKSGRLD 322
           C  DT SY++L+  F N+    +A E+   M       C  +  TY  +I  L K+   D
Sbjct: 165 CTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFD 224

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A  +FQ+M +   +P+ + +  L+      G+    +++  +M   G +P    Y SL+
Sbjct: 225 RAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLL 284

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
                  ++ + L L  E    G  P+  +F +   ++AK G +D AM IF  M + G  
Sbjct: 285 NYLCALSEMHSFLDLMVE---NGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLS 341

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P    Y  L++     G+VD A   +N M + G+ P +  + +L+  L      + A ++
Sbjct: 342 PNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEEL 401

Query: 503 LLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNF 550
           + EM   G   +    + L+  + + G V    R +  M   G+R + F
Sbjct: 402 VYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAF 450



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 118/266 (44%), Gaps = 1/266 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  SY  L++ +   G   +A ++++ M     S    TY  ++     + R+D A  LF
Sbjct: 448 DAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLF 507

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM  +   P    + +++  + +  R   + ++Y+ M   G +     Y  ++    K+
Sbjct: 508 REMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKS 567

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
             +D A +++  +   G + N   FT++I +  K G+ + AM +F  +   G +P   TY
Sbjct: 568 NCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTY 627

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             + E     G ++    L+++M   G  P      AL+  L  R  +  A   L ++  
Sbjct: 628 RLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDE 687

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHA 533
             +SV+ S + +L+ ++  D    HA
Sbjct: 688 RNFSVEASTTSLLISIFTSDEYQHHA 713



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 133/314 (42%), Gaps = 14/314 (4%)

Query: 300 ECSL----DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ECS+    +  TY ++I  L + GRL  +   F  + +  +R +  +   L+  +    R
Sbjct: 89  ECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKR 148

Query: 356 LDTSMKVYME-MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR---PNFG 411
           +  +M V ++ M   G  P    Y  L++ +    + + AL L   M     R   PN  
Sbjct: 149 VGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVV 208

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +T +I+   K+   D A  +F  M   G  P   TY+CL+  + S G+    +++   M
Sbjct: 209 TYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKM 268

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSV 530
           ++ GL+P   TY +LL  L     +     +++E    G S D    ++    Y K G +
Sbjct: 269 SARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVE---NGLSPDHHIFNIFFSAYAKCGMI 325

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D A+     M   G+  N      L ++  K    + A+      +      ++V++ S+
Sbjct: 326 DKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSL 385

Query: 591 LAHLVRCQDEQNER 604
           +  L  C  ++ ER
Sbjct: 386 VYGL--CTVDKWER 397



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 87/200 (43%), Gaps = 3/200 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  Y  L      +   D    LF EM+      G+     YN ++  L +  +   +
Sbjct: 482 PTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVV---TYNTILHGLFQTKRFSEA 538

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              +  +++S  K D  +YN+++          +AF++++S+      L+  T+ +MI +
Sbjct: 539 KELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGA 598

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K GR + A+ LF  +      P+   +  + +++ + G L+    ++  M+  G  P+
Sbjct: 599 LLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPN 658

Query: 375 APMYVSLIESYAKAGKLDTA 394
           + M  +L+      G +  A
Sbjct: 659 SQMLNALVRRLLHRGDISRA 678



 Score = 40.4 bits (93), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 64/334 (19%), Positives = 123/334 (36%), Gaps = 57/334 (17%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y  LI    + G+L  +   +  +   G+R N  +   +++      ++  AM +
Sbjct: 96  PNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDV 155

Query: 433 FTD-MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR---PGLSTYTALLT 488
               M   G  P   +YS LL+   +  + + A++L   M +   R   P + TYT ++ 
Sbjct: 156 LLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVID 215

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
            L K +L D A  +  +M                       +D+           G++ N
Sbjct: 216 GLCKAQLFDRAEGVFQQM-----------------------IDN-----------GVKPN 241

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
           N     L    +    ++    +LE       K D   Y S+L +L    +  +   LM 
Sbjct: 242 NDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMV 301

Query: 609 I--LSATKHKAHAFL-----CGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNV 661
              LS   H  + F      CG+      +   + + +R+  HG+   +    A      
Sbjct: 302 ENGLSPDHHIFNIFFSAYAKCGMI----DKAMDIFNKMRQ--HGLSPNVVNYGA------ 349

Query: 662 LLNYLVLMGQINRARCVWKVAYENKLFPKAIVFD 695
           L++ L  +G+++ A   +       + P  +VF+
Sbjct: 350 LIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFN 383


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 7/291 (2%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L+L D MV +  +        Y  +I  L K    E +     K+ ++  K     YN +
Sbjct: 30  LALVDRMVEEGHQ-------PYGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAI 82

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +      G    A  ++  M       D  TY  MI S  +SGR   A +L ++M ER  
Sbjct: 83  IDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQI 142

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    F++L++++ K G++  + ++Y +M   G  P+   Y S+I+ + K  +L+ A R
Sbjct: 143 NPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKR 202

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           + D M      P+   F+ +I  + K+ ++D  M IF +M R G +    TY+ L+    
Sbjct: 203 MLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFC 262

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
             G +D+A  L N M S+G+ P   T+ ++L  L  +K +  A  IL +++
Sbjct: 263 QVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQ 313



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 148/310 (47%), Gaps = 8/310 (2%)

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSG 319
           ++++ C+ D  ++  LM     +G   +A  + + M E+G        Y  +I  L K G
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGH-----QPYGTIINGLCKMG 55

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             ++A+ L  +M+E + +    I+ +++D + K G    +  ++ EM   G  P    Y 
Sbjct: 56  DTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYS 115

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            +I+S+ ++G+   A +L  +M      P+   F+ +I +  K GK+  A  I+ DM R 
Sbjct: 116 GMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRR 175

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  PT  TY+ +++      +++ A ++ +SM S    P + T++ L+    K K VD  
Sbjct: 176 GIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNG 235

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            +I  EM   G   + V+ + ++  + + G +D A   L  M SSG+  N    + +  S
Sbjct: 236 MEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLAS 295

Query: 559 -CMKNALYES 567
            C K  L ++
Sbjct: 296 LCSKKELRKA 305



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 121/283 (42%), Gaps = 3/283 (1%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSY 255
           G + Y  + + L +  D +  L+L  +M     K  + +   YN +I  L K      + 
Sbjct: 40  GHQPYGTIINGLCKMGDTESALNLLSKMEETHIKAHVVI---YNAIIDRLCKDGHHIHAQ 96

Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
             F ++ D     D  +Y+ ++  F   G    A ++   M + + + D  T+  +I +L
Sbjct: 97  NLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINAL 156

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            K G++  A +++ +M  R   P+   + S++D   K  RL+ + ++   M      P  
Sbjct: 157 VKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDV 216

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             + +LI  Y KA ++D  + ++ EM   G   N   +T +I    + G LD A  +   
Sbjct: 217 VTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNV 276

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           M  +G  P   T+  +L    S  ++  A  +   +  + + P
Sbjct: 277 MISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKSEVCP 319


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 163/353 (46%), Gaps = 2/353 (0%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMS 254
           G E  V  +  L       G+L +   + H  S++G+   +  YN +I  L +  +++ +
Sbjct: 350 GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 409

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +     +  + C  +  +YN ++  +   G P KA  +  +M +   S +  TY  +I  
Sbjct: 410 FVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
              SG   +A+++   M++   +P    +  L+    K  +++++  ++ EM   G  P+
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +LI+ Y K  KLDTA  L + M+ +G RPN   + ++I    K      A  +  
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 589

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G  P   TY+ +++    +G    A++++N M   G  P L TY++L+  L +  
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
            V+ A  +  E++  G   D ++   ++  YI  G V+HA  +L  M  +G +
Sbjct: 650 KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 158/351 (45%), Gaps = 15/351 (4%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + ++L    + +   YN ++      G    A  I + + + E S D  TY  MI    +
Sbjct: 203 YHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCR 262

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
              LD+A+++F +M +    P+   +++L++ +  +GR++ +  +  EM   G  P+A  
Sbjct: 263 KHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT 322

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
               I +    G  + A RL+ +M+  G  PN   +T +I     SG L +A+ +F  M 
Sbjct: 323 CTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMS 382

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL---TLLAKRK 494
           R G  P   TY+ L+ +   + ++  A  + N M   G  P + TY  ++    +L   K
Sbjct: 383 RDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPK 442

Query: 495 LVDVAAKILLEMKTM---GYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
                 K +L M  M   G+S + V+ + ++  Y   G+   ALR L  M   G + + +
Sbjct: 443 ------KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW 496

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
              +L     K +  ESA  L    V+     + V YT+++     C+DE+
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGY--CKDEK 545



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 162/395 (41%), Gaps = 36/395 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN VI  L K   +  +    KKV +S+   DT +Y  ++     K     A +++  M 
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K  C  +  TY  +I  L  SGR++ A  L +EM      P+ +     + ++   G  +
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYE 337

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM---------------- 401
            + +++++M+  G  P+   Y +LI     +G L  A+ L+  M                
Sbjct: 338 DAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 397

Query: 402 -------RIA------------GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
                  RI             G  PN   +  +I+ +   G    AM +  +M + G  
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHS 457

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
               TY+ +++ +  SG   SA+++ + M   G +P   +YT L+    K   ++ A  +
Sbjct: 458 ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGL 517

Query: 503 LLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             EM   G    +V+ + ++  Y KD  +D A   L  M  SG R N      L     K
Sbjct: 518 FNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTK 577

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +  A+ L +  +E     ++V YT+++  L +
Sbjct: 578 QNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 612



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 142/349 (40%), Gaps = 6/349 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAY 238
           ++ LF    R   + P    Y  L ++L E+R       + + M     +NG S     Y
Sbjct: 374 AIGLFHRMSRDGVF-PNTVTYNALINILVENRRIKYAFVVLNLM----GRNGCSPNIVTY 428

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I+        + +      +L      +  +YN ++  + + G    A  I + M  
Sbjct: 429 NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRD 488

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
           G C  D  +Y  +I    K  ++++A  LF EM +    P+   + +L+D   K  +LDT
Sbjct: 489 GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDT 548

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  +   M+  G RP+   Y  LI    K      A  L   M   G  PN   +T +I+
Sbjct: 549 ATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMID 608

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
              K+G   +A+ +F  M   G LP   TYS L+      G+V+ A  L+  +   GL P
Sbjct: 609 GLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
              TY  ++        V+ A   L  M   G    +    VL+  +K+
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 8/266 (3%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM- 296
           YN +I+    +     +      + D  CK D  SY  L+  F        AF ++  M 
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           + G C  +  TY  +I    K  +LD A  L + MK    RP+   +  L+  + K    
Sbjct: 523 DDGLCP-NEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 581

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++   M   G  P+   Y ++I+   K G    AL ++++M   G  PN   ++ +
Sbjct: 582 SGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 641

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I +  + GK++ A ++F ++ER G +P   TY  ++E +  SG+V+ A      M  AG 
Sbjct: 642 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 701

Query: 477 RPGLSTYTALLT------LLAKRKLV 496
           +P L TY  L+       LLA ++L 
Sbjct: 702 QPTLWTYGVLIKGLKNEYLLADQRLA 727



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 172/420 (40%), Gaps = 9/420 (2%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           +D D++L +F    ++    P    Y  L + L +S   +    L  EM+     +GI L
Sbjct: 264 HDLDSALQVFNQMAKEGCE-PNTVTYSTLINGLCDSGRVNEAFDLIREMI----LHGI-L 317

Query: 235 FSAYNRVIQYLAKADK--LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
            +A+      +A  D    E ++  F  + +  C+ +  +Y  L++     GL   A  +
Sbjct: 318 PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGL 377

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  M +     +  TY  +I  L ++ R+  A  +   M      P+   +  ++     
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G    +M V   M   GH  +   Y ++I+ Y  +G   +ALR+ D MR  G +P+   
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +T +I    K  K++ A  +F +M   G  P   TY+ L++ +    ++D+A  L   M 
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVD 531
            +G RP + TY  L+  L K+     A ++   M   G +   V+ + ++    K+GS  
Sbjct: 558 RSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTS 617

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            AL     M   G   N      L  +  +    E A+ L           D + Y  ++
Sbjct: 618 LALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 164/382 (42%), Gaps = 31/382 (8%)

Query: 163 KMVHITQALKVINDSDTSLSLFRWAK--RQSWYVPGDECYVMLFDVLNESRDFDGMLSLF 220
            +V     +K   DS  + S  R     R     P +  Y  L     +    +    LF
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518

Query: 221 DEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           +EMV D    N ++    Y  +I    K +KL+ +    + +  S C+ + Q+YNVL+  
Sbjct: 519 NEMVDDGLCPNEVT----YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHG 574

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
              +     A E+ + M +     +  TY  MI  L K+G    A+++F +M E+   P+
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              ++SL+ ++G+ G+++ +  ++ E++  G  P    YV +IE+Y  +GK++ A     
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKL-DIAMSIFTDM---------------------E 437
            M  AG +P    + ++I+       L D  ++   D+                     +
Sbjct: 695 RMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAK 754

Query: 438 RAGFLPTPSTY--SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
            A   P  S    + L+   +++G+   A +L  SM S GL P    Y +LL  L + + 
Sbjct: 755 LAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRN 814

Query: 496 VDVAAKILLEMKTMGYSVDVSA 517
           VD+A  +   M T G  V ++ 
Sbjct: 815 VDLAMGVFKHMSTQGCEVHLNG 836



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 107/262 (40%), Gaps = 1/262 (0%)

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           + +   R     +++L+  + + G     M  Y  M   G +P+  +Y ++I +  K G 
Sbjct: 171 LSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGN 230

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +  A  +  ++  +   P+   +T +I  H +   LD A+ +F  M + G  P   TYS 
Sbjct: 231 VADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYST 290

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L+     SG+V+ A  L   M   G+ P   T T  +  L      + A ++ ++MK  G
Sbjct: 291 LINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKG 350

Query: 511 YSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
              +V     L+  +   G +  A+     M   G+  N      L    ++N   + A 
Sbjct: 351 CEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAF 410

Query: 570 PLLETYVESAAKVDLVLYTSVL 591
            +L     +    ++V Y  ++
Sbjct: 411 VVLNLMGRNGCSPNIVTYNEMI 432


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 179/410 (43%), Gaps = 13/410 (3%)

Query: 194 VPGDECYV--MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251
           VP D   V  +L  +  + R  D   +L + MV      G+ +   +N ++    K   +
Sbjct: 133 VPFDAVTVNTVLVGLCRDGR-VDRAAALAEVMVRGGGIGGLDVV-GWNSLVDGYCKVGDM 190

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E ++   +++      +D   YN L+      G    A ++ ++M++     +  TY + 
Sbjct: 191 ETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMF 250

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I    +   +D A  L++EM  +   P     ++LV  + K GR   +  ++ EM+  G 
Sbjct: 251 IVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGA 310

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+   Y  LI++ AKA + + +L L  E+   G   +  ++T +++   K GK+D A  
Sbjct: 311 APNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKD 370

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +F         P   TY+ L++    +G VD A ++ + M    + P + T+++++  L 
Sbjct: 371 MFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLV 430

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV-----DHALRWLRFMGSSGIR 546
           KR  V  A   + EMK  G   +V    V    + DGS      + AL     M   G+ 
Sbjct: 431 KRGWVGKATDYMREMKERGIDPNV----VTYGTVIDGSFKCLGQEAALDVYHEMLCEGVE 486

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            N FIV  L     KN   E A+ L     E    +D V YT+++  L +
Sbjct: 487 VNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFK 536



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 153/339 (45%), Gaps = 4/339 (1%)

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +L S   +DT SYNV+M+ F  +G       + E  ++G    D  T   ++  L + GR
Sbjct: 94  LLRSSESVDTVSYNVVMSGFSEQGGLAPEALLAEMCKRG-VPFDAVTVNTVLVGLCRDGR 152

Query: 321 LDAAIKLFQEMKERNFRPSFNIFA--SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           +D A  L + M         ++    SLVD   K G ++T+  V   M+  G       Y
Sbjct: 153 VDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGY 212

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SL+    +AG++D A  + D M+  G  PN   +TM I  + +   +D A S++ +M R
Sbjct: 213 NSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVR 272

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G LP   T S L+      G+   A  L+  M   G  P   TY  L+  LAK +  + 
Sbjct: 273 KGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNE 332

Query: 499 AAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           +  +L E+ + G  +D+     LM ++ K+G +D A    R   S     N      L +
Sbjct: 333 SLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLID 392

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  K    + A+ +L    E +   ++V ++S++  LV+
Sbjct: 393 ALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVK 431



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 116/523 (22%), Positives = 214/523 (40%), Gaps = 23/523 (4%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           +LFR  ++     P    Y ML D L +++  +  LSL  E+V   S+  +     Y  +
Sbjct: 300 ALFREMEKIG-AAPNHVTYCMLIDTLAKAQRGNESLSLLGEVV---SRGVVMDLIMYTAL 355

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           + +L K  K++ +   F+  L  +   +  +Y VL+      G    A ++   ME+   
Sbjct: 356 MDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSI 415

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           S +  T+  +I  L K G +  A    +EMKER   P+   + +++D   K    + ++ 
Sbjct: 416 SPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALD 475

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           VY EM   G   +  +  SL+    K GK++ A  L+ EM   G   +   +T +I+   
Sbjct: 476 VYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLF 535

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           K+G L  A  +  ++     LP    Y+  +      G+   A      M S GL+P   
Sbjct: 536 KTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQV 595

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFM 540
           TY  ++   ++      A K+L  MK      ++     L+V + + G+V+ A   L  M
Sbjct: 596 TYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEM 655

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDE 600
            SSG    +   R++ ++C +    +    + E  + +    D+ +Y +++   V C + 
Sbjct: 656 SSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVR--VLCYNG 713

Query: 601 QNERHLMAILSATKHKA--------HAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEE 652
              R  M +L     +         +A + G F           ++ +  +HGI   +  
Sbjct: 714 MT-RKAMVVLEEMSGRGIAPDTITFNALILGHFK-SGHLDNAFSTYDQMLYHGISPNVAT 771

Query: 653 GAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFD 695
                  N LL  L   G+I  +  V     +  + P  + +D
Sbjct: 772 ------FNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYD 808



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 187/407 (45%), Gaps = 40/407 (9%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFS 236
           D +  +FR A   + + P    Y +L D L ++ + DG   +  EM   S S N ++  S
Sbjct: 366 DEAKDMFRHALSDN-HTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSS 424

Query: 237 AYNRVIQ--YLAKADK--------------------LEMSYCC---------FKKVLDSD 265
             N +++  ++ KA                      ++ S+ C         + ++L   
Sbjct: 425 IINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEG 484

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
            +++    + L+      G   KA  ++  M +    LD   Y  +I  L K+G L AA 
Sbjct: 485 VEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAF 544

Query: 326 KLFQEMKERNFRPS---FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
           K+ QE+ E+N  P    +N+F + +  +GK+   ++ ++   EMQ  G +P    Y ++I
Sbjct: 545 KVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLE---EMQSTGLKPDQVTYNTMI 601

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
            + ++ GK   AL+L + M+ +  +PN   ++ +I    ++G ++ A  +  +M  +GF 
Sbjct: 602 AAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFS 661

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           PT  T+  +L+  +   + D  ++++  M +AGL   ++ Y  L+ +L    +   A  +
Sbjct: 662 PTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVV 721

Query: 503 LLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
           L EM   G + D ++ + +++ + K G +D+A      M   GI  N
Sbjct: 722 LEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPN 768



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 174/400 (43%), Gaps = 7/400 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH-DSSKNGIS 233
           N  D + SL+    R+   +P       L   L +   F    +LF EM    ++ N ++
Sbjct: 258 NAVDDAFSLYEEMVRKG-VLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVT 316

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
               Y  +I  LAKA +   S     +V+     +D   Y  LM     +G   +A +++
Sbjct: 317 ----YCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMF 372

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
                   + +G TY ++I +L K+G +D A ++  EM+E++  P+   F+S+++ + K 
Sbjct: 373 RHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKR 432

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G +  +     EM+  G  P+   Y ++I+   K    + AL ++ EM   G   N  + 
Sbjct: 433 GWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIV 492

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             ++    K+GK++ A ++F +M   G L     Y+ L++    +G + +A K+   +T 
Sbjct: 493 DSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTE 552

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
             L P    Y   +  L        A   L EM++ G   D V+ + ++    ++G    
Sbjct: 553 KNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAK 612

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           AL+ L  M  S I+ N      L     +    E AK LL
Sbjct: 613 ALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLL 652



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 129/308 (41%), Gaps = 6/308 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AY 238
           +L L    KR S   P    Y  L   L E+   +    L +EM    S +G S  S  +
Sbjct: 613 ALKLLNGMKRSSIK-PNLITYSTLIVGLFEAGAVEKAKYLLNEM----SSSGFSPTSLTH 667

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
            RV+Q  ++  + ++     + ++++    D   YN L+ +    G+  KA  + E M  
Sbjct: 668 RRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSG 727

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              + D  T+  +I    KSG LD A   + +M      P+   F +L+  +  AGR+  
Sbjct: 728 RGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGE 787

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           S  V  EM+  G  PS   Y  L+  Y K      A+RL+ EM   GF P    +  +I 
Sbjct: 788 SDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALIS 847

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
             +K G +  A  +F +M+  G LPT  TY  L+   +         K    M   G  P
Sbjct: 848 DFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSP 907

Query: 479 GLSTYTAL 486
              T +++
Sbjct: 908 SKGTLSSI 915



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 135/299 (45%), Gaps = 1/299 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I  L K   L  ++   +++ + +   D   YNV +      G   +A    E M+
Sbjct: 527 YTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQ 586

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  TY  MI + ++ G+   A+KL   MK  + +P+   +++L+  + +AG ++
Sbjct: 587 STGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVE 646

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  +  EM   G  P++  +  ++++ ++  + D  L + + M  AG   +  ++  ++
Sbjct: 647 KAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLV 706

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                +G    AM +  +M   G  P   T++ L+  H  SG +D+A   Y+ M   G+ 
Sbjct: 707 RVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGIS 766

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALR 535
           P ++T+  LL  L     +  +  +L EMK  G        D+L+  Y K  +   A+R
Sbjct: 767 PNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVR 825



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 144/358 (40%), Gaps = 38/358 (10%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D L ++ +      +  E+   + KN +     YN  I  L    K + +    +
Sbjct: 527 YTTLIDGLFKTGNLPAAFKVGQEL---TEKNLLPDAVVYNVFINCLCMLGKSKEAESFLE 583

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++  +  K D  +YN ++     +G   KA ++   M++     +  TY  +I  L ++G
Sbjct: 584 EMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAG 643

Query: 320 RLDAAIKLFQEMKERNFRPS-----------------------------------FNIFA 344
            ++ A  L  EM    F P+                                     ++ 
Sbjct: 644 AVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYN 703

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +LV  +   G    +M V  EM G G  P    + +LI  + K+G LD A   +D+M   
Sbjct: 704 TLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYH 763

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  PN   F  ++     +G++  +  +  +M++ G  P+  TY  L+  +        A
Sbjct: 764 GISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEA 823

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           ++LY  M   G  P +STY AL++  +K  ++  A ++  EM+  G        D+L+
Sbjct: 824 VRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILV 881



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 120/281 (42%), Gaps = 3/281 (1%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           S + P    +  +    ++ R  D +L + + M++      I++++   RV+ Y     K
Sbjct: 658 SGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRK 717

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
              +    +++       DT ++N L+      G    AF  Y+ M     S + +T+  
Sbjct: 718 ---AMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNT 774

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++  L  +GR+  +  +  EMK+R   PS   +  LV   GK      ++++Y EM G G
Sbjct: 775 LLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKG 834

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P    Y +LI  ++K G +  A  L++EM+  G  P    + +++   +K        
Sbjct: 835 FLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVR 894

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
               DM+  GF P+  T S +    +  G    A +L  ++
Sbjct: 895 KFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWEARRLLKNL 935



 Score = 48.5 bits (114), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 128/323 (39%), Gaps = 29/323 (8%)

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKL--------------FQEMKERNFRPSFNIFAS-- 345
           SL  S    +IP+LA SG   AA++                     R+ RP+  +  S  
Sbjct: 40  SLPSSLLRRLIPALASSGLAAAAVRFRPVPGDSLSLNSILLSHRALRSLRPALALLRSSE 99

Query: 346 ---------LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
                    ++    + G L     +  EM   G    A    +++    + G++D A  
Sbjct: 100 SVDTVSYNVVMSGFSEQGGLAPE-ALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAA 158

Query: 397 LWDEMRIAGFRPNFGL--FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           L + M   G      +  +  +++ + K G ++ A ++   M+  G       Y+ L+  
Sbjct: 159 LAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAG 218

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +G+VD+A  + ++M   G+ P + TYT  +    +R  VD A  +  EM   G   D
Sbjct: 219 LCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPD 278

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V+ S ++    KDG    A    R M   G   N+     L ++  K      +  LL 
Sbjct: 279 VVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLG 338

Query: 574 TYVESAAKVDLVLYTSVLAHLVR 596
             V     +DL++YT+++  L +
Sbjct: 339 EVVSRGVVMDLIMYTALMDWLCK 361


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 179/404 (44%), Gaps = 8/404 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P   C   L   L   R F  M SL   M   + +   +L +AY       A    L  
Sbjct: 38  LPPLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHL-- 95

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
                  +L +    D+ +Y   +  +   G+   A  ++  M    C     TY  ++ 
Sbjct: 96  -----TSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLH 150

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L  +G +  A+ +F  M+  +  P  +++A++V  + +AGR + +  +  E    G  P
Sbjct: 151 GLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEP 210

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +  +Y +LI+ Y  AG+++ AL++++ M      PN   +T +I    KSGK++ AM +F
Sbjct: 211 NIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLF 270

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           + M  AG  P   TY+ L++   + G +  A +L + M + GL P   T++ L+  L KR
Sbjct: 271 SRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKR 330

Query: 494 KLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
           + V+ A   L  +   G  V +V  + ++    K G +D A   ++ M S G   +    
Sbjct: 331 EKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSY 390

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L +   +      A  +LE  +E   +   V YT ++  LVR
Sbjct: 391 SSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVR 434



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 144/318 (45%), Gaps = 1/318 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y  L+   L  G+  +A  ++  M    C+ D   Y  M+  L ++GR + A  L +E 
Sbjct: 144 TYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEA 203

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
               F P+  ++ +L+D    AG ++ ++KV+  M G    P+   Y  LI    K+GK+
Sbjct: 204 MSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV 263

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A+ L+  M  AG  PN   +T +I+     G L  A  +   ME  G +P   T+S L
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++      +V+ A     S+   G++     YT+L+  L K   +D A +++ +M + G+
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 512 SVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D  S S ++    +   +  A   L  M   GI+ +      + +  ++    E  K 
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443

Query: 571 LLETYVESAAKVDLVLYT 588
           + +  + +    D+V YT
Sbjct: 444 IFDKMIATGINPDIVTYT 461



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 142/331 (42%), Gaps = 1/331 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN L+  + N G    A +++E M+   CS +  TY  +I  L KSG+++ A+ LF  M 
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV 274

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           E    P+   + +L+      G L  + ++   M+  G  P+   +  LI++  K  K++
Sbjct: 275 EAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVE 334

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A      +   G + N  ++T +I+   K+GK+D A  +   M   GF+P   +YS L+
Sbjct: 335 EAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           +      ++  A  +   M   G++    TYT ++  L +    +   KI  +M   G +
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D+    V +  Y ++G ++ A   +  M   G+  N      L        L   A   
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
            E  V    K +   YT +L  +V+     N
Sbjct: 515 FEVMVGKGWKPNEDSYTVLLRLVVKKSSSDN 545



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 145/345 (42%), Gaps = 38/345 (11%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           + P    Y  L D    + + +  L +F+ M  +     +     Y  +I  L K+ K+E
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVR---TYTELIHGLCKSGKVE 264

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME--------------- 297
            +   F +++++  + +  +Y  L+    N+G    AF +   ME               
Sbjct: 265 RAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLI 324

Query: 298 --------------------KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                               K    ++   Y  +I  L K+G++DAA +L Q+M    F 
Sbjct: 325 DALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFV 384

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P  + ++SL+D + +  +L  +  +  +M   G + S   Y  +I+   +    +   ++
Sbjct: 385 PDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKI 444

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +D+M   G  P+   +T+ + S+ + G+++ A S+   M   G  P   TY+ L+  +A+
Sbjct: 445 FDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYAN 504

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
            G V  A   +  M   G +P   +YT LL L+ K+   D +  I
Sbjct: 505 LGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDI 549



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 127/312 (40%), Gaps = 19/312 (6%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLE 252
           VP D  + +L D L +    +        +V    K G+ +    Y  +I  L K  K++
Sbjct: 314 VPNDWTFSVLIDALCKREKVEEAQLFLGSLV----KKGVKVNEVVYTSLIDGLCKTGKID 369

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMT-LFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
            +    +K++      D  SY+ L+  L   K L      + + MEKG       TY ++
Sbjct: 370 AADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG-IQASPVTYTII 428

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L +    +   K+F +M      P    +   V S  + GR++ +  + ++M   G 
Sbjct: 429 IDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGV 488

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+   Y +LI  YA  G +  A   ++ M   G++PN   +T+++    K    D ++ 
Sbjct: 489 FPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVD 548

Query: 432 IF--TDMERAGFLPTPST----------YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           I+   DM+    L    T          YSC +       +++ A   +  M +A L P 
Sbjct: 549 IWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPS 608

Query: 480 LSTYTALLTLLA 491
              YT+++   A
Sbjct: 609 EDVYTSIIDCCA 620


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 178/402 (44%), Gaps = 4/402 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L     +    D  + + DEM   ++K  +     Y  +I  L +  K+E +
Sbjct: 275 PSTRTYTVLIKAKCDIGMTDKAMKMLDEM---ATKACVPNVHTYTILIDRLCREGKIEEA 331

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F+K+L         ++N L+  +  +G    AF++   MEKG C  +  TY  ++  
Sbjct: 332 NGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEG 391

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L +  +   A  L + + +    P    +  LVD   K G+L+ +  ++  M   G  P 
Sbjct: 392 LCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 451

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              + +LI+   K G+L+ A  +   M   G   +   FT +I+ H K GK      +F 
Sbjct: 452 GFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFE 511

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M     L T  T++C L+      +++ A  +   M   GL P + T+T L+    +  
Sbjct: 512 NMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG 571

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
              ++ K+L  MK  G S +V    +++  +  +G V+ A   L  M S G+  N+F   
Sbjct: 572 ETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYA 631

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L ++ +K    + A  ++ T V++  + +  +Y+++L+  V
Sbjct: 632 VLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFV 673



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 203/461 (44%), Gaps = 51/461 (11%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +++ L +  K   ++   ++V+D+    D  +YN+L+  F  +G    AF I+ SM
Sbjct: 384 TYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSM 443

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAA-------IK----------------------- 326
                  DG T+  +I  L K GRL+ A       +K                       
Sbjct: 444 NSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKA 503

Query: 327 -----LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
                LF+ M E     + + F   +D++GK  +L+ +  +  +M   G  PS   +  L
Sbjct: 504 KDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTIL 563

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           IE + +AG+   +L++ + M+ AG  PN   +T+II     +G+++ A +I   M   G 
Sbjct: 564 IEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGV 623

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT--LLAKRKLVDVA 499
            P   TY+ L++ H  +G++D A ++ ++M   G +P    Y+ALL+  +L+   +   A
Sbjct: 624 SPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARA 683

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTN---NFIVRQL 555
                ++     S + + ++ L  ++ +   VDHAL+    +   G+ T    NF+V  L
Sbjct: 684 LSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGL 743

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
              C +  + E A  L +  V+     D  + +S++ H  +     N    M ++   K 
Sbjct: 744 ---CKEGRIIE-ADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKF 798

Query: 616 -KAHAFLCGLFTG--PEQRKQPVLSFVREFFH--GIDYELE 651
             + A  C +  G   E R Q     V +     GI+ E+E
Sbjct: 799 VPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVE 839



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 139/315 (44%), Gaps = 40/315 (12%)

Query: 238 YNRVIQYLAKADKLEMS--YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           Y  V+  L K   ++ +  +CC  KVL     +DT     L+     +    +AF ++E 
Sbjct: 174 YRTVVNALCKNGFVQAAEMFCC--KVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEK 231

Query: 296 MEKGE-CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           M K E C  +  TY ++I  L ++GRL+ A +L QEM E+  +PS   +  L+ +    G
Sbjct: 232 MSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIG 291

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
             D +MK+  EM      P+   Y  LI+   + GK++ A  ++ +M   G  P    F 
Sbjct: 292 MTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFN 351

Query: 415 MIIESHAKSGKLDIAMSIFTDMERA----------------------------------- 439
            +I  + K G +  A  + + ME+                                    
Sbjct: 352 ALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDN 411

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G LP   TY+ L++     GQ++ A  ++NSM SAGL P   T+TAL+  L K   ++ A
Sbjct: 412 GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQA 471

Query: 500 AKILLEMKTMGYSVD 514
             IL  M   G S+D
Sbjct: 472 NGILGSMVKKGISLD 486



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 186/460 (40%), Gaps = 66/460 (14%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM----LSLFDEMVHDSSKN 230
           N+ +  +  F+W  RQS Y    +  + L  VL  SRD  G+    + L  +   DS   
Sbjct: 58  NNVELGVRFFKWVCRQSSYCYDLDGRIQLLGVL-VSRDLFGVAQKAVVLLIQECEDSENG 116

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
            + L  A + + +         +SY C               Y+ L+       + + AF
Sbjct: 117 VVKLMGALDGMTEL-----GFRLSYPC---------------YSTLLMCLAKLNMGFVAF 156

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            +Y  M      L G  Y  ++ +L K+G + AA     ++    F    ++  SLV + 
Sbjct: 157 LVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLAN 216

Query: 351 GKAGRLDTSMKVYMEM---QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
            +   L  + +V+ +M   + C  RP++  Y  LI    +AG+L+ A +L  EM   G +
Sbjct: 217 CRRDDLGEAFRVFEKMSKEENC--RPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQ 274

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+   +T++I++    G  D AM +  +M     +P   TY+ L++     G+++ A  +
Sbjct: 275 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 334

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV---- 523
           +  M   GL PG+ T+ AL+    K   V  A ++L  M+      ++   + LM     
Sbjct: 335 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 394

Query: 524 --------------------------------YIKDGSVDHALRWLRFMGSSGIRTNNFI 551
                                           + K+G ++ A      M S+G+  + F 
Sbjct: 395 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 454

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              L +   K    E A  +L + V+    +D V +T+++
Sbjct: 455 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALI 494


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 4/336 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEENLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A  LF EM ++   P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           + TYT ++    K+  V   +K+L EM+  GY   V
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSV 416



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D  + + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 145/319 (45%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  KE  FR  F+    +++ + K     
Sbjct: 59  KGTLRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E   CG+  S   +  L+ S+ K G++  A  ++D +   G RP+   F  ++
Sbjct: 119 LVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K G L+    +   M+ +G  P   TYS L+       ++D A  L++ M   GL 
Sbjct: 179 NGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ + F    L +   K    E+A    +  ++   ++D V YT++++ L  
Sbjct: 299 IDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL-- 356

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 357 CQEGRSVDAEKMLREMLSV 375



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD     +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G+ P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|34393621|dbj|BAC83297.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 657

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 135/268 (50%)

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
           I   +Y +++      G P++   ++E M K  C+ + + Y  +I S+ K GR   A+ L
Sbjct: 328 IPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMAL 387

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F+ MK+   +     +  +V+ + + G+LD ++  +   Q  G   +A  Y SLI+ + K
Sbjct: 388 FERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGK 447

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           AG +D +  L++EM   GF P+   + ++I+  AKSG++D A +++  ME  G   T  T
Sbjct: 448 AGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYT 507

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L++      + + A+K +++M   G+ P  + +  L + L        A +IL E+ 
Sbjct: 508 YTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELA 567

Query: 508 TMGYSVDVSASDVLMVYIKDGSVDHALR 535
            MG   + +  D++ V  K G    A +
Sbjct: 568 PMGVIPETAHEDMINVLCKAGRFKQACK 595



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 137/315 (43%), Gaps = 2/315 (0%)

Query: 188 KRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247
           + Q+   P    Y+ L         F   + LF EM      N I    AY  VI  L K
Sbjct: 284 QEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQH-AYVLVIGALCK 342

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
             K       F+++L   C  +   Y  L+      G   +A  ++E M+     LD  T
Sbjct: 343 DGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVT 402

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y +++  L + G+LD A+  F+  +E+    +   + SL+D  GKAG +D S +++ EM 
Sbjct: 403 YGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMI 462

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P +  Y  LI+  AK+G++D A  L+  M   G       +T++I+   K  K +
Sbjct: 463 AKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNE 522

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+  +  M   G  PT + +  L      SG+   A ++ + +   G+ P  + +  ++
Sbjct: 523 EALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIPE-TAHEDMI 581

Query: 488 TLLAKRKLVDVAAKI 502
            +L K      A K+
Sbjct: 582 NVLCKAGRFKQACKL 596



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 7/300 (2%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           L  S+   +I SLA  G  +  +  ++ M+     PS  I+  L+D +  AG LDT++ V
Sbjct: 184 LTPSSSASLIRSLAALGLAEELLWAWKAMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNV 243

Query: 363 YMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMR-IAGFRPNFGLFTMIIESH 420
           +  M      RP    Y  LI+ Y +AG+   A+    EM+  A   P+   +  +++ H
Sbjct: 244 FDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCH 303

Query: 421 AKSGKLDIAMSIFTDMERAGF---LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              G   + + +F +ME  G    +P    Y  ++      G+    M ++  M   G  
Sbjct: 304 YSEGTFPVCIGLFQEMEERGMGNDIPQ-HAYVLVIGALCKDGKPFEGMAVFERMLKRGCA 362

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
              + YTAL+  + K      A  +   MK  G  +D V+   ++    + G +D A+  
Sbjct: 363 ANAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVAC 422

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            R     GI  N      L +   K  + + +K L E  +      D   Y  ++  L +
Sbjct: 423 FRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAK 482


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 184/429 (42%), Gaps = 27/429 (6%)

Query: 126 KKPFLNASAVAKIVEVVNRWKWG-PE----LETQLDKLQFVPKMVHITQALKVINDSDTS 180
           +  FL     A I++++ + +W  P+    +++ L  +     +V + Q      D   +
Sbjct: 59  QSSFLGQLDKASIIKIIQQDQWNDPKFVRFIDSSLGPIWVSRVLVELKQ------DPKLA 112

Query: 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESR-DFDG------------MLSLFD--EMVH 225
           L  FRWAK +  +    E Y +L  +L  +R  FD             +L  FD  E++ 
Sbjct: 113 LKFFRWAKTKFGFCLTTESYCLLVHILFYARMYFDANFFLKELISSRRILPGFDVFEVLW 172

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
            +    +  F  ++ +     +   LE +  CF ++         +S N  +      G 
Sbjct: 173 STRNVCVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGK 232

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
              + + +  M     +    TY +MI  + K G +  A  LF +MK+    P    + S
Sbjct: 233 GDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNS 292

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+D  GK G LD S  ++ EM+  G  P    Y +LI  + K  ++  A     EM+ +G
Sbjct: 293 LIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSG 352

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +PN   ++ +I++  K   L  A+    DM R G  P   TY+ L++ +  +G +  A+
Sbjct: 353 LKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDAL 412

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VY 524
           KL + M    +   + TYT LL  L K   +  A  +   M   G + ++     L+  +
Sbjct: 413 KLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGH 472

Query: 525 IKDGSVDHA 533
           IK+  V++A
Sbjct: 473 IKNKRVENA 481



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 163/357 (45%), Gaps = 4/357 (1%)

Query: 215 GMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           G   L ++   D    GI  S+F+ YN +I Y+ K   +  +   F ++       D  +
Sbjct: 231 GKGDLSNKFFRDMVGAGIAQSVFT-YNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVT 289

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN L+  +   GL  ++F ++E M+   C  D  TY  +I    K  ++  A     EMK
Sbjct: 290 YNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMK 349

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
               +P+   +++L+D++ K   L  ++K  ++M+  G  P+   Y SLI++  KAG L 
Sbjct: 350 NSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLS 409

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            AL+L DEM       N   +T +++   K G++  A  +F  M +AG  P   TY+ L+
Sbjct: 410 DALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALV 469

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             H  + +V++A++L   +    ++P L  Y  ++  L  +  ++    ++ EMK  G  
Sbjct: 470 HGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIR 529

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
            +     + M  Y K G    AL  L+ M   G+         L +   K  L E A
Sbjct: 530 ANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEA 586



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/434 (20%), Positives = 180/434 (41%), Gaps = 6/434 (1%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           D  T+ SLF   K Q    P    Y  L D   +    D    LF+EM     +  +   
Sbjct: 267 DMVTAKSLFHQMK-QMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVI-- 323

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
             YN +I    K +++  ++    ++ +S  K +  +Y+ L+     + +  +A +    
Sbjct: 324 -TYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLD 382

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +   S +  TY  +I +  K+G L  A+KL  EM +     +   + +L+D + K GR
Sbjct: 383 MRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGR 442

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  +  ++  M   G  P+   Y +L+  + K  +++ AL L  E++    +P+  L+  
Sbjct: 443 MMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGT 502

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           II       KL+    + ++M+  G       Y+  ++ +  +G+   A+ L   M   G
Sbjct: 503 IIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLG 562

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV--YIKDGSVDHA 533
           +   + T+  L+  L K+ LV+ A      M       +  A    ++    K+  ++ A
Sbjct: 563 VEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAA 622

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
            +    M    +  +      L +  +K+  ++ A  +     E   ++DL  YTS++  
Sbjct: 623 KKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWG 682

Query: 594 LVRCQDEQNERHLM 607
           L +    Q  R  +
Sbjct: 683 LSQGNLVQQARMFL 696



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 163/366 (44%), Gaps = 3/366 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    KA  L  +     ++L      +  +Y  L+     +G   +A +++ +M
Sbjct: 394 TYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAM 453

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K   + +  TY  ++    K+ R++ A++L +E+KE+  +P   ++ +++  +    +L
Sbjct: 454 IKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKL 513

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +    V  EM+ CG R ++ +Y   +++Y K GK   AL L  EM   G       F ++
Sbjct: 514 EECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVL 573

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTP-STYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I+   K G ++ A+  F  M      P   +  + L++    +  +++A KL++ M    
Sbjct: 574 IDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKN 633

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHAL 534
           + P    YTAL+    K K    A  I   M  +G  +D+ A   L+  +  G+ V  A 
Sbjct: 634 MVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQAR 693

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH- 593
            +L  M   GI  +  +  +L     +    + A  L +  ++     +L+   +++   
Sbjct: 694 MFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELLKKVPLDELLEEQNLMPEK 753

Query: 594 LVRCQD 599
           ++RC+D
Sbjct: 754 ILRCRD 759


>gi|356563451|ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 714

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 127/517 (24%), Positives = 217/517 (41%), Gaps = 29/517 (5%)

Query: 268 IDTQSYNVLMTLFLN---KGLPY-KAF----EIYESMEKGECSLDGSTYELMIPSLAKSG 319
           I TQ+   + T+F N   K L + K F    E+   M      LD  TY  +I    K  
Sbjct: 179 IRTQNLLPMETIFYNVTMKSLRFGKQFGLIEELAHQMIDNGVPLDNITYSTIISCAKKCN 238

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+  F+ M + +  P    +++++D   + G+++  + +Y   +  G +P    + 
Sbjct: 239 LYDKAVHWFERMYKTSLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFS 298

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            L + + +AG  D    ++ EM   G +PN  ++  ++E+  K+GK   A  +F +M   
Sbjct: 299 VLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIEL 358

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G +P   T + +++++  +     A++L+  M   G       Y  LL + A   LV+ A
Sbjct: 359 GIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEA 418

Query: 500 AKILLEMKTMGYSVDVSAS--DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
             +  +MK   +    S S   +L +Y   G VD A++    M  SG+  N      L +
Sbjct: 419 ETLFRDMKQSAHCKPDSWSYTAMLNIYGSQGDVDKAMKLFNEMCKSGVELNVMGFTCLIQ 478

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA 617
              +   ++    +    VE   K D  L   +L+ +   Q   +E  ++A L     K 
Sbjct: 479 CLGRATEFDDLVRVFGISVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQRANPKL 538

Query: 618 HAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARC 677
            AF+  +     + ++     V+E F GI         R F N L++         RA  
Sbjct: 539 VAFIHLI-----EDEKSSFESVKEEFKGIMSNAAVEVRRPFCNCLIDICRNKDLRERAHE 593

Query: 678 VWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAV---MHTLHRFRKRMLYYGVVP 734
           +  +     L+P  +       W LDVR+LSVGAAL A+   M TL +  KR      +P
Sbjct: 594 LLYLGTLYGLYP-GLHNKTDNEWCLDVRSLSVGAALTALEEWMWTLTKIVKR---EETLP 649

Query: 735 RRIKLVTGP-------TLKIVIAQMLSSVESPFEVSK 764
                 TG         L I  A  L  + +PF+ S+
Sbjct: 650 ELFLAQTGTGAHKFAQGLNISFASHLRKLAAPFKQSE 686



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 201/447 (44%), Gaps = 26/447 (5%)

Query: 158 LQFVPKMVHITQALKVIND----SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213
           L+ +P+ +    AL ++N       T+L L  W + Q+  +P +    + ++V  +S  F
Sbjct: 147 LEEIPRPISRENALLILNTLKPWQKTNLFL-NWIRTQN-LLPME---TIFYNVTMKSLRF 201

Query: 214 DGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
                L +E+ H    NG+ L +  Y+ +I    K +  + +   F+++  +    D  +
Sbjct: 202 GKQFGLIEELAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTSLMPDEVT 261

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y+ ++ ++   G   +   +YE         D  T+ ++     ++G  D    +FQEM+
Sbjct: 262 YSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEME 321

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
               +P+  ++ +L+++MGKAG+   +  ++ EM   G  P+     ++I+ Y KA    
Sbjct: 322 SVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIELGIVPNEKTLTAVIKIYGKARWSR 381

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PTPSTYSCL 451
            AL LW  M+  G+  +F L+  ++   A  G ++ A ++F DM+++    P   +Y+ +
Sbjct: 382 DALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSAHCKPDSWSYTAM 441

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           L ++ S G VD AMKL+N M  +G+   +  +T L+  L +    D   ++       G 
Sbjct: 442 LNIYGSQGDVDKAMKLFNEMCKSGVELNVMGFTCLIQCLGRATEFDDLVRVFGISVERGI 501

Query: 512 SVDVSASDVLM--VYIKDGSVDHALRWLRFMGSSGIRTNNFI------------VRQLFE 557
             D      L+  V +  GS D   + L  +  +  +   FI            V++ F+
Sbjct: 502 KPDDRLCGCLLSVVSLSQGSNDEE-KVLACLQRANPKLVAFIHLIEDEKSSFESVKEEFK 560

Query: 558 SCMKNALYESAKPLLETYVESAAKVDL 584
             M NA  E  +P     ++     DL
Sbjct: 561 GIMSNAAVEVRRPFCNCLIDICRNKDL 587


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 177/390 (45%), Gaps = 6/390 (1%)

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK 267
           +++ +   LSL  +M      NGI   F   N ++   ++   ++ S+  F K+L     
Sbjct: 70  KAKQYQTALSLSQQM----EFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYH 125

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            D  ++ +L+     KG  +KA   ++ +      LD  +Y  +I  L + G   AA++L
Sbjct: 126 PDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQL 185

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
            + +  +  RP+  ++++++DSM K   ++ +  +Y EM      P    Y SLI  +  
Sbjct: 186 LRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCV 245

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            GKL  A+ L++ M      PN   F+++I+   K GK+  A ++   M +        T
Sbjct: 246 VGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVT 305

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L++ +    QV+ A  L+N M   G+ P + +Y+ ++    K K+VD A K+  EM 
Sbjct: 306 YNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMH 365

Query: 508 TMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
                 +V   + L+  + K G    AL  +  M   G  +N      + ++  KN   +
Sbjct: 366 CKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVD 425

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            A  LL    E   + D+  YT ++  L +
Sbjct: 426 KAIVLLTKIKEKGIQPDIFTYTVLINGLCK 455



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 159/348 (45%), Gaps = 6/348 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  + D + + +  +    L+ EMV   SK        Y+ +I       KL+ +   F 
Sbjct: 201 YSTIIDSMCKDKLVNDAFDLYCEMV---SKRISPDVVTYSSLISGFCVVGKLKYAVDLFN 257

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++  +   +  ++++L+  F  +G   +A  +   M K    LD  TY  ++       
Sbjct: 258 RMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVK 317

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +++ A  LF  M +R   P    ++ +++   K   +D +MK++ EM      P+   Y 
Sbjct: 318 QVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYN 377

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SL++   K+G+   AL L DEM   G   N   +  I+++  K+  +D A+ + T ++  
Sbjct: 378 SLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEK 437

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   TY+ L+      G++D A K++  +   G  P + TYT+L+     +   D  
Sbjct: 438 GIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEG 497

Query: 500 AKILLEMKTMGYSVDVSASDVLM--VYIKDGSVDHALRWLRFMGSSGI 545
             +L +MK  G   +    ++L+  ++ KD + D A + LR M + G+
Sbjct: 498 LAMLSKMKDNGCIPNAITYEILIHSLFEKDEN-DKAEKLLREMIARGL 544



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 2/172 (1%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           +YN L+      G    A E+ + M ++G+ S +  TY  ++ ++ K+  +D AI L  +
Sbjct: 375 TYNSLVDGLCKSGRTSCALELVDEMHDRGQPS-NIITYNSILDAICKNNHVDKAIVLLTK 433

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           +KE+  +P    +  L++ + K GRLD + KV+ ++   G+ P+   Y SLI  +   G 
Sbjct: 434 IKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGF 493

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
            D  L +  +M+  G  PN   + ++I S  +  + D A  +  +M   G L
Sbjct: 494 FDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGLL 545


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 187/455 (41%), Gaps = 53/455 (11%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D  L  F+W +++   +   E +  L  +L  +++++ + +L D    ++  +  ++F +
Sbjct: 88  DLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHS 147

Query: 238 Y---------NRVIQYL-----AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
                     N +I  +      K  +++++   F +  D   ++   S N ++   + +
Sbjct: 148 LSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKE 207

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           G       +Y+ M +    ++  T++++I  L K G+   A  + ++MK   F PS   +
Sbjct: 208 GRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITY 267

Query: 344 ASLVDSMGKAGRL-----------------------------------DTSMKVYMEMQG 368
            +++D   KAG++                                     + KV+ EMQ 
Sbjct: 268 NTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQR 327

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G +P+   Y SLI      GKLD AL L D+M   G +PN   +  +I    K   L  
Sbjct: 328 QGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKE 387

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +  D+ + G  P   T++ L++ +  +G++D A  L + M   G+ P +STY  L+ 
Sbjct: 388 AREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIV 447

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWL---RFMGSSG 544
              +   V  A K+  EM+  G   D+   ++L+    K G    A+R L     M   G
Sbjct: 448 GFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKG 507

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
            R N      L +        E A  LL   +E  
Sbjct: 508 RRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKG 542



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 144/325 (44%), Gaps = 4/325 (1%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFK 259
           V+ FDV+       G      ++V D    G S     YN +I    KA K+  +    K
Sbjct: 229 VVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLK 288

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++      +  ++N+L+  F        A +++E M++     +  TY  +I  L  +G
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +LD A+ L  +M     +P+   + +L++   K   L  + ++  ++   G  P+   + 
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI++Y KAG++D A  L   M   G  PN   +  +I    + G +  A  +  +ME  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT---SAGLRPGLSTYTALLTLLAKRKLV 496
           G      TY+ L++     G+   A++L + MT     G R  + TY  L+     +  +
Sbjct: 469 GLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKL 528

Query: 497 DVAAKILLEMKTMGYSVDVSASDVL 521
           + A ++L EM   G   + +  D+L
Sbjct: 529 EEANRLLNEMLEKGLIPNRTTYDIL 553



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 125/284 (44%), Gaps = 7/284 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  + +L D      +      +F+EM     +  +     YN +I  L    KL+ +
Sbjct: 297 PNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVV---TYNSLINGLCSNGKLDEA 353

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                K+     K +  +YN L+  F  K +  +A E+ + + K   + +  T+  +I +
Sbjct: 354 LGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDA 413

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K+GR+D A  L   M +    P+ + +  L+    + G +  + K+  EM+G G +  
Sbjct: 414 YGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD 473

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRI---AGFRPNFGLFTMIIESHAKSGKLDIAMS 431
              Y  L+++  K G+   A+RL DEM +    G R N   + ++I+     GKL+ A  
Sbjct: 474 LVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANR 533

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQV-DSAMKLYNSMTSA 474
           +  +M   G +P  +TY  L +     G + D    LYN   S+
Sbjct: 534 LLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDIDGHLYNVSISS 577


>gi|297725689|ref|NP_001175208.1| Os07g0491500 [Oryza sativa Japonica Group]
 gi|255677777|dbj|BAH93936.1| Os07g0491500, partial [Oryza sativa Japonica Group]
          Length = 654

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 135/268 (50%)

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
           I   +Y +++      G P++   ++E M K  C+ + + Y  +I S+ K GR   A+ L
Sbjct: 325 IPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMAL 384

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F+ MK+   +     +  +V+ + + G+LD ++  +   Q  G   +A  Y SLI+ + K
Sbjct: 385 FERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGK 444

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           AG +D +  L++EM   GF P+   + ++I+  AKSG++D A +++  ME  G   T  T
Sbjct: 445 AGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYT 504

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L++      + + A+K +++M   G+ P  + +  L + L        A +IL E+ 
Sbjct: 505 YTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELA 564

Query: 508 TMGYSVDVSASDVLMVYIKDGSVDHALR 535
            MG   + +  D++ V  K G    A +
Sbjct: 565 PMGVIPETAHEDMINVLCKAGRFKQACK 592



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 137/315 (43%), Gaps = 2/315 (0%)

Query: 188 KRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247
           + Q+   P    Y+ L         F   + LF EM      N I    AY  VI  L K
Sbjct: 281 QEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQH-AYVLVIGALCK 339

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
             K       F+++L   C  +   Y  L+      G   +A  ++E M+     LD  T
Sbjct: 340 DGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVT 399

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y +++  L + G+LD A+  F+  +E+    +   + SL+D  GKAG +D S +++ EM 
Sbjct: 400 YGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMI 459

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P +  Y  LI+  AK+G++D A  L+  M   G       +T++I+   K  K +
Sbjct: 460 AKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNE 519

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+  +  M   G  PT + +  L      SG+   A ++ + +   G+ P  + +  ++
Sbjct: 520 EALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIPE-TAHEDMI 578

Query: 488 TLLAKRKLVDVAAKI 502
            +L K      A K+
Sbjct: 579 NVLCKAGRFKQACKL 593



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 7/300 (2%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           L  S+   +I SLA  G  +  +  ++ M+     PS  I+  L+D +  AG LDT++ V
Sbjct: 181 LTPSSSASLIRSLAALGLAEELLWAWKAMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNV 240

Query: 363 YMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMR-IAGFRPNFGLFTMIIESH 420
           +  M      RP    Y  LI+ Y +AG+   A+    EM+  A   P+   +  +++ H
Sbjct: 241 FDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCH 300

Query: 421 AKSGKLDIAMSIFTDMERAGF---LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
              G   + + +F +ME  G    +P    Y  ++      G+    M ++  M   G  
Sbjct: 301 YSEGTFPVCIGLFQEMEERGMGNDIPQ-HAYVLVIGALCKDGKPFEGMAVFERMLKRGCA 359

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
              + YTAL+  + K      A  +   MK  G  +D V+   ++    + G +D A+  
Sbjct: 360 ANAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVAC 419

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            R     GI  N      L +   K  + + +K L E  +      D   Y  ++  L +
Sbjct: 420 FRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAK 479


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 143/294 (48%)

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           K G     +YN +I+ L +  K++ +   ++ + + DC  D+ +Y VL+      G   K
Sbjct: 328 KEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNK 387

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A  I E  E G   LD   Y  MI  L + GRLD    +  +M +   +P+  +  ++++
Sbjct: 388 ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVIN 447

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
              +A +L+ +++ +  M   G  P+   Y +LI   +KA +   A  L  EM   G++P
Sbjct: 448 GFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKP 507

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           N   +++++    +  KLD+A++++      GF P    ++ ++    SSG+V+ A++LY
Sbjct: 508 NMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLY 567

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           + M      P L T+  L+    K +  + A+KI   +   G   D+ + ++ +
Sbjct: 568 SEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITL 621



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 190/431 (44%), Gaps = 24/431 (5%)

Query: 185 RWAKRQSWYV--------PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--L 234
           +W + +S+++        P  + Y +L  +    + FD    L + M       G S  +
Sbjct: 104 KWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMW----GQGFSPDV 159

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           FS Y  +I  LAK   +  +   F ++ +     D   YN+L+  F  KG    A EI+E
Sbjct: 160 FS-YGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWE 218

Query: 295 SMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            + KG        +Y +MI  L K G+ D + +++  MK+         +++L+  +  +
Sbjct: 219 RLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGS 278

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G LD + +VY EM   G  P   +Y +++  Y +AG+++  L LW  M   G R     +
Sbjct: 279 GNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVS-Y 337

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
            ++I    ++ K+D A+SI+  +          TY  L+     +G ++ A+ +     +
Sbjct: 338 NILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAEN 397

Query: 474 AGLRPGLST--YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD-VLMVYIKDGSV 530
              R  L T  Y++++  L +   +D  A +L +M   G   +    + V+  +++   +
Sbjct: 398 G--RGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKL 455

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           + ALR+   M S G          L     K   +  A  L++  ++   K +++ Y+ +
Sbjct: 456 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLL 515

Query: 591 LAHLVRCQDEQ 601
           +  L  CQ ++
Sbjct: 516 MNGL--CQGKK 524



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 156/362 (43%), Gaps = 3/362 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN ++  L +++K + +   F          + Q+YN+L+ +   K    KA E+   M
Sbjct: 91  SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 150

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  +Y  +I SLAK+G +  A+KLF EM ER   P    +  L+D   K G +
Sbjct: 151 WGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDI 210

Query: 357 DTSMKVYME-MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
             + +++   ++G    P+ P Y  +I    K GK D +  +W  M+      +   ++ 
Sbjct: 211 LNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYST 270

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I     SG LD A  ++ +M   G  P    Y+ +L  +  +G+++  ++L+  M   G
Sbjct: 271 LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 330

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHAL 534
            R  +S Y  L+  L +   VD A  I   +       D     VL+  + K+G ++ AL
Sbjct: 331 CRTVVS-YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 389

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             L    +     + F    +     +    +    +L+   +   K +  +  +V+   
Sbjct: 390 SILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGF 449

Query: 595 VR 596
           VR
Sbjct: 450 VR 451



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 155/362 (42%), Gaps = 9/362 (2%)

Query: 266 CKIDTQSYNVLMTLFL--NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
           C+   +SYN L+   +  NK    ++F +Y   E    S +  TY ++I    +  + D 
Sbjct: 85  CQPGIRSYNSLLNALIESNKWDEAESFFLY--FETMGLSPNLQTYNILIKISCRKKQFDK 142

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A +L   M  + F P    + +L++S+ K G +  ++K++ EM   G  P    Y  LI+
Sbjct: 143 AKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILID 202

Query: 384 SYAKAGKLDTALRLWDE-MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
            + K G +  A  +W+  ++     PN   + ++I    K GK D +  I+  M++    
Sbjct: 203 GFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERG 262

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
               TYS L+     SG +D A ++Y  M   G+ P +  Y  +L    +   ++   ++
Sbjct: 263 QDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLEL 322

Query: 503 LLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
              M+  G    VS + ++    ++  VD A+     +       ++     L     KN
Sbjct: 323 WKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKN 382

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH--KAHAF 620
                A  +LE        +D   Y+S++  L  C++ + +     +   TKH  K + +
Sbjct: 383 GYLNKALSILEEAENGRGDLDTFAYSSMINGL--CREGRLDEVAGVLDQMTKHGCKPNPY 440

Query: 621 LC 622
           +C
Sbjct: 441 VC 442



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 146/327 (44%), Gaps = 26/327 (7%)

Query: 136 AKIVEVVNRWKWGPELETQLDKLQF------VPKMVHITQALKVINDSDTS---LSLFRW 186
           AK+ E ++ W+  PE +   D + +      + K  ++ +AL ++ +++     L  F +
Sbjct: 348 AKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAY 407

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
           +              M+  +  E R  D +  + D+M     K    + +A   VI    
Sbjct: 408 SS-------------MINGLCREGR-LDEVAGVLDQMTKHGCKPNPYVCNA---VINGFV 450

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306
           +A KLE +   F  ++   C     +YN L+          +A+ + + M +     +  
Sbjct: 451 RASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMI 510

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY L++  L +  +LD A+ L+ +  E+ F+P   +   ++  +  +G+++ ++++Y EM
Sbjct: 511 TYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEM 570

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +     P+   + +L+E + K    + A ++WD +   G +P+   + + ++      ++
Sbjct: 571 KQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRI 630

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLE 453
             A+    D    G LPT  T++ L++
Sbjct: 631 SDAVGFLNDAVDRGVLPTAITWNILVQ 657



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 129/288 (44%), Gaps = 3/288 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L   L ++   +  LS+ +E   ++ +  +  F AY+ +I  L +  +L+       
Sbjct: 372 YGVLVHGLCKNGYLNKALSILEEA--ENGRGDLDTF-AYSSMINGLCREGRLDEVAGVLD 428

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++    CK +    N ++  F+       A   + +M    C     TY  +I  L+K+ 
Sbjct: 429 QMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAE 488

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R   A  L +EM ++ ++P+   ++ L++ + +  +LD ++ ++ +    G +P   M+ 
Sbjct: 489 RFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHN 548

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            +I     +GK++ AL+L+ EM+     PN      ++E   K    + A  I+  + + 
Sbjct: 549 IIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY 608

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           G  P   +Y+  L+   S  ++  A+   N     G+ P   T+  L+
Sbjct: 609 GLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILV 656



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 3/168 (1%)

Query: 384 SYAKAGKLDTALRLWDEM-RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           +YAK    D AL ++  M  I G +P    +  ++ +  +S K D A S F   E  G  
Sbjct: 62  AYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLS 121

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   TY+ L+++     Q D A +L N M   G  P + +Y  L+  LAK   +  A K+
Sbjct: 122 PNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKL 181

Query: 503 LLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR-WLRFMGSSGIRTN 548
             EM   G + DV+  ++L+  + K G + +A   W R +    +  N
Sbjct: 182 FDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPN 229



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 117/276 (42%), Gaps = 14/276 (5%)

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ---GCGHRPSAPMYVSLIE 383
           +F  + +R F P     A   +SM      D ++ ++  M    GC  +P    Y SL+ 
Sbjct: 45  VFHHILKRLFDPKLVAHAYAKNSMP-----DQALDIFQRMHEIFGC--QPGIRSYNSLLN 97

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           +  ++ K D A   +      G  PN   + ++I+   +  + D A  +   M   GF P
Sbjct: 98  ALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSP 157

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              +Y  L+   A +G +  A+KL++ M   G+ P ++ Y  L+    K+  +  A++I 
Sbjct: 158 DVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEI- 216

Query: 504 LEMKTMGYSV--DVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
            E    G SV  ++ + +V++  + K G  D +      M  +    + +    L     
Sbjct: 217 WERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLC 276

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            +   + A  + +   E+    D+V+Y ++L   +R
Sbjct: 277 GSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLR 312


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 162/366 (44%), Gaps = 5/366 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN VI+ L +   L  +      ++ S  + D  ++N L+  +        A ++++ M
Sbjct: 155 TYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 214

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                + D  +Y  +I  L ++GR+D A++LF EM +    P  +++A+LV  +  A R 
Sbjct: 215 PLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGLCNAERG 270

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +  + +   M+  G RPS   Y ++++   +  K   A  +  EM   G  P     T +
Sbjct: 271 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAV 330

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++ K G++  A+ +   M+  G  P   TY+ L++   + G+V  AM L N M + G+
Sbjct: 331 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGV 390

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P   TY  L+        ++ A ++L  M+  G   D    + L+    KDG  D A  
Sbjct: 391 NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACS 450

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               + + GI+ N      L     K+   + A   LE  V +    D   Y+S + HL 
Sbjct: 451 LFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLC 510

Query: 596 RCQDEQ 601
           + +  Q
Sbjct: 511 KMKGSQ 516



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 174/418 (41%), Gaps = 8/418 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L LF    R +   P    Y  +   L    D    L     MV    +     F   N
Sbjct: 136 ALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTF---N 192

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I    + ++++++   F K+       D  SY  L+      G   +A E++  M++ 
Sbjct: 193 SLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQP 252

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D   Y  ++  L  + R +  + + + MKE  +RPS   +A++VD   +  +   +
Sbjct: 253 ----DMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEA 308

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            ++  EM   G  P      ++I +Y K G++  ALR+ + M++ G +PN   +  +++ 
Sbjct: 309 EEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQG 368

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
               GK+  AM++   M   G  P   TY+ L+      G ++SA +L   M   GL   
Sbjct: 369 FCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIAD 428

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLR 538
             TY AL+  L K    D A  +   ++T G   + V+ + ++    K G  D A ++L 
Sbjct: 429 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLE 488

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            M S+G   + +      E   K    +     +   ++   K   V YT V+  L++
Sbjct: 489 KMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLK 546



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 165/406 (40%), Gaps = 5/406 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           +  L + R  K   W  P    Y  + D     R       +  EM        +   +A
Sbjct: 271 EEGLLMLRRMKELGWR-PSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTA 329

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
              VI    K  ++  +    + +    CK +  +YN L+  F N+G  +KA  +   M 
Sbjct: 330 ---VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMR 386

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + D  TY L+I      G +++A +L + M+          + +L++++ K GR D
Sbjct: 387 ACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTD 446

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  ++  ++  G +P+A  + SLI    K+GK D A +  ++M  AG  P+   ++  I
Sbjct: 447 QACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI 506

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E   K       +S   +M +    P+   Y+ ++             + +  M S+G  
Sbjct: 507 EHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCN 566

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P + TYT  +        ++ A  +L+EM   G +VD  A + LM  +   G  DHA+  
Sbjct: 567 PDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSI 626

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
           L+ M S     N F    L    ++  L E   PL    V  A ++
Sbjct: 627 LKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIEL 672



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 171/436 (39%), Gaps = 49/436 (11%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L + L E+   D  + LF EM              Y  +++ L  A++ E      +
Sbjct: 226 YATLIEGLCEAGRIDEAVELFGEMDQPD-------MHMYAALVKGLCNAERGEEGLLMLR 278

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKG--ECSLDGSTYELMIPSLA 316
           ++ +   +  T++Y  ++     +    +A E+ + M EKG   C +   T   +I +  
Sbjct: 279 RMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVV---TCTAVINAYC 335

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           K GR+  A+++ + MK R  +P+   + +LV      G++  +M +  +M+ CG  P A 
Sbjct: 336 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAV 395

Query: 377 MYV-----------------------------------SLIESYAKAGKLDTALRLWDEM 401
            Y                                    +LI +  K G+ D A  L+D +
Sbjct: 396 TYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 455

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G +PN   F  +I    KSGK DIA      M  AG  P   TYS  +E        
Sbjct: 456 ETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 515

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDV 520
              +     M    ++P    YT ++  L K +   + A+   EM + G + DV + +  
Sbjct: 516 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 575

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  Y  +G ++ A   L  M  +G+  +      L +        + A  +L+     A+
Sbjct: 576 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 635

Query: 581 KVDLVLYTSVLAHLVR 596
             +   Y  +L HLVR
Sbjct: 636 VPNQFTYFILLRHLVR 651



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 117/290 (40%), Gaps = 42/290 (14%)

Query: 336 FRPSFN-IFASLVDSMGKAGRLDTSMKVYMEMQGCGHR-----PSAPMYVSLIESYAKAG 389
            RP F+  FASL+  + +      +++++  M    HR     P+AP Y ++I S  +  
Sbjct: 112 LRPLFDRPFASLLAHLSRFALAPLALRLFAHM----HRHAPPAPTAPTYNAVIRSLCRRA 167

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
            L  ALR    M  +G+RP+   F  +I  + ++ ++D+A  +F  M   GF     +Y+
Sbjct: 168 DLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYA 227

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSA-------------------------------GLRP 478
            L+E    +G++D A++L+  M                                  G RP
Sbjct: 228 TLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRP 287

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWL 537
               Y A++    + +    A ++L EM   G +   V+ + V+  Y K+G +  ALR L
Sbjct: 288 STRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVL 347

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
             M   G + N +    L +          A  LL          D V Y
Sbjct: 348 ELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTY 397



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 148/386 (38%), Gaps = 58/386 (15%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L + L +    D   SLFD +     K N ++    +N +I  L K+ K ++++   
Sbjct: 432 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVT----FNSLINGLCKSGKADIAWKFL 487

Query: 259 KKVLDSDCKIDTQSYNVLM-------------------------------TLFLNKGLPY 287
           +K++ + C  DT +Y+  +                               T+ ++K L  
Sbjct: 488 EKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKE 547

Query: 288 KAFEI----YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           + + +    +  M    C+ D  TY   + +    GRL+ A  +  EM +         +
Sbjct: 548 RNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAY 607

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA----------------- 386
            +L+D     G+ D ++ +  +M      P+   Y  L+                     
Sbjct: 608 NTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVW 667

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           KA +L     L+D M+   F PN G ++ I+E  ++ G+ + A S+ + M+         
Sbjct: 668 KAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNED 727

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            Y+ L+     S +   A  L  SM   G  P L +Y  LL+ L      D A +I +  
Sbjct: 728 IYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNS 787

Query: 507 KTMGYSVDVSASDVLM-VYIKDGSVD 531
           +   YS D     V++   IK G  D
Sbjct: 788 RWKDYSPDEIVWKVIIDGLIKKGHSD 813



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 113/259 (43%), Gaps = 18/259 (6%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
            +G L+  + ++ + SKNG+++ + AYN ++   A   + + +    K++       +  
Sbjct: 581 IEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQF 640

Query: 272 SYNVLM-----------TLFLNKGLPYKAFEI------YESMEKGECSLDGSTYELMIPS 314
           +Y +L+            L L     +KA E+      ++ M+K E   +  TY  ++  
Sbjct: 641 TYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEG 700

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            ++ GR + A  L   MKE +   + +I+ +LV    K+ R   +  +   M   G  P 
Sbjct: 701 FSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQ 760

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  L+      G+ D A  ++   R   + P+  ++ +II+   K G  DI+  +  
Sbjct: 761 LMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMII 820

Query: 435 DMERAGFLPTPSTYSCLLE 453
            +ER    P+  TY+ L E
Sbjct: 821 MLERMNCRPSHQTYAMLTE 839



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 124/310 (40%), Gaps = 20/310 (6%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LS   EM+    K        Y  VI  L K     +    + +++ S C  D  +Y   
Sbjct: 519 LSFIGEMLQKDVKPSTV---NYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 575

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +  +G   +A  +   M K   ++D   Y  ++   A  G+ D A+ + ++M     
Sbjct: 576 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 635

Query: 337 RPS----FNIFASLVD-------------SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            P+    F +   LV               + KA  L     ++  M+     P++  Y 
Sbjct: 636 VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYS 695

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           S++E +++ G+ + A  L   M+      N  ++T ++    KS +   A  +   M + 
Sbjct: 696 SILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQH 755

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           GF+P   +Y  LL      GQ D A +++ +       P    +  ++  L K+   D++
Sbjct: 756 GFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDIS 815

Query: 500 AKILLEMKTM 509
            ++++ ++ M
Sbjct: 816 REMIIMLERM 825



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 58/317 (18%), Positives = 117/317 (36%), Gaps = 20/317 (6%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y ++   L + R++  +   + EMV       +  ++   R      + ++ E  
Sbjct: 532 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAEN- 590

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                ++  +   +DT +YN LM    + G    A  I + M       +  TY +++  
Sbjct: 591 --VLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRH 648

Query: 315 LA-----------------KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           L                  K+  L     LF  MK+  F P+   ++S+++   + GR +
Sbjct: 649 LVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTE 708

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  +   M+      +  +Y +L+  + K+ +   A  L   M   GF P    +  ++
Sbjct: 709 EATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLL 768

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                 G+ D A  IF +     + P    +  +++     G  D + ++   +     R
Sbjct: 769 SGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCR 828

Query: 478 PGLSTYTALLTLLAKRK 494
           P   TY  L   L  R+
Sbjct: 829 PSHQTYAMLTEELPDRE 845


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 147/329 (44%), Gaps = 3/329 (0%)

Query: 194  VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            +P    Y  L D   +  D       F EM    S++       Y  +I    +   +  
Sbjct: 771  LPDTIVYTTLVDGFCKRGDIRAASKFFYEM---HSRDITPDVLTYTAIISGFCQIGDMVE 827

Query: 254  SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
            +   F ++L    + D  ++  LM  +   G    AF ++  M +  CS +  TY  +I 
Sbjct: 828  AGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLID 887

Query: 314  SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
             L K G LD+A +L  EM +   +P+   + S+V+ + K+G ++ ++K+  E +  G   
Sbjct: 888  GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA 947

Query: 374  SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
                Y +L+++Y K+G++D A  +  EM   G +P    F +++      G L+    + 
Sbjct: 948  DTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 1007

Query: 434  TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
              M   G  P  +T++CL++ +     + +A  +Y  M S G+ P   TY  L+      
Sbjct: 1008 NWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNA 1067

Query: 494  KLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            + +  A  +  EMK  G+SV VS   VL+
Sbjct: 1068 RNMKEAWFLFQEMKGKGFSVSVSTYSVLI 1096



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 149/333 (44%), Gaps = 8/333 (2%)

Query: 237  AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +Y+ VI    +  +L+  +   +K+     K ++ +Y  ++ L        +A E +  M
Sbjct: 706  SYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEM 765

Query: 297  EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                   D   Y  ++    K G + AA K F EM  R+  P    + +++    + G +
Sbjct: 766  IGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 825

Query: 357  DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
              + K++ EM   G  P    +  L+  Y KAG +  A R+ + M  AG  PN   +T +
Sbjct: 826  VEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTL 885

Query: 417  IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
            I+   K G LD A  +  +M + G  P   TY+ ++     SG ++ A+KL     +AGL
Sbjct: 886  IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 945

Query: 477  RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
                 TYT L+    K   +D A +IL EM   G    +   +VLM  +   G ++   +
Sbjct: 946  NADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 1005

Query: 536  WLRFMGSSGIRTN----NFIVRQLFESCMKNAL 564
             L +M + GI  N    N +V+Q    C++N L
Sbjct: 1006 LLNWMLAKGIAPNATTFNCLVKQY---CIRNNL 1035



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 152/338 (44%), Gaps = 1/338 (0%)

Query: 236  SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
            ++YN VI ++ +  ++  ++     +       D  SY+ ++  +   G   K +++ E 
Sbjct: 670  ASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEK 729

Query: 296  MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
            M++     +  TY  +I  L +  +L  A + F EM  +   P   ++ +LVD   K G 
Sbjct: 730  MKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGD 789

Query: 356  LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +  + K + EM      P    Y ++I  + + G +  A +L+ EM   G  P+   FT 
Sbjct: 790  IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTE 849

Query: 416  IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
            ++  + K+G +  A  +   M +AG  P   TY+ L++     G +DSA +L + M   G
Sbjct: 850  LMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 909

Query: 476  LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
            L+P + TY +++  L K   ++ A K++ E +  G + D      LM  Y K G +D A 
Sbjct: 910  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 969

Query: 535  RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
              L  M   G++        L      + + E  + LL
Sbjct: 970  EILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 1007



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 3/296 (1%)

Query: 219  LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
            LF EM+    +  I  F+    ++    KA  ++ ++     ++ + C  +  +Y  L+ 
Sbjct: 831  LFHEMLCRGLEPDIITFT---ELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLID 887

Query: 279  LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
                +G    A E+   M K     +  TY  ++  L KSG ++ A+KL  E +      
Sbjct: 888  GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA 947

Query: 339  SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
                + +L+D+  K+G +D + ++  EM G G +P+   +  L+  +   G L+   +L 
Sbjct: 948  DTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 1007

Query: 399  DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
            + M   G  PN   F  +++ +     L  A +I+ DM   G  P   TY  L++ H ++
Sbjct: 1008 NWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNA 1067

Query: 459  GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +  A  L+  M   G    +STY+ L+    KRK    A +I  +M+  G + D
Sbjct: 1068 RNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAAD 1123



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/306 (19%), Positives = 129/306 (42%), Gaps = 2/306 (0%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK-AGRLDTSMKV 362
           D   +++    L + G L  A K+F++M       S +     +  + K   +  T++ V
Sbjct: 597 DPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIV 656

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           + E    G   +   Y  +I    + G+++ A  L   M + G+ P+   ++ +I  + +
Sbjct: 657 FREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCR 716

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            G+LD    +   M++ G  P   TY  ++ +     ++  A + ++ M   G+ P    
Sbjct: 717 FGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIV 776

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMG 541
           YT L+    KR  +  A+K   EM +   + DV + + ++  + + G +  A +    M 
Sbjct: 777 YTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEML 836

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
             G+  +     +L     K    + A  +    +++    ++V YT+++  L +  D  
Sbjct: 837 CRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD 896

Query: 602 NERHLM 607
           +   L+
Sbjct: 897 SANELL 902



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 119/316 (37%), Gaps = 53/316 (16%)

Query: 149  PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
            P++ T  + +    K  HI  A +V N              Q+   P    Y  L D L 
Sbjct: 842  PDIITFTELMNGYCKAGHIKDAFRVHNH-----------MIQAGCSPNVVTYTTLIDGLC 890

Query: 209  ESRDFDGMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
            +  D D      +E++H+  K G+  ++F+ YN ++  L K+  +E +     +   +  
Sbjct: 891  KEGDLDSA----NELLHEMWKIGLQPNIFT-YNSIVNGLCKSGNIEEAVKLVGEFEAAGL 945

Query: 267  KIDTQSYNVLMTLFLNKGLPYKAFEIYESM-------------------------EKGEC 301
              DT +Y  LM  +   G   KA EI   M                         E GE 
Sbjct: 946  NADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 1005

Query: 302  SLD----------GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
             L+           +T+  ++        L AA  ++++M  R   P    + +LV    
Sbjct: 1006 LLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHC 1065

Query: 352  KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
             A  +  +  ++ EM+G G   S   Y  LI+ + K  K   A  ++D+MR  G   +  
Sbjct: 1066 NARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKE 1125

Query: 412  LFTMIIESHAKSGKLD 427
            +F    ++  K  + D
Sbjct: 1126 IFDFFSDTKYKGKRPD 1141



 Score = 43.1 bits (100), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 80/202 (39%), Gaps = 3/202 (1%)

Query: 200  YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
            Y  L D   +S + D    +  EM+    +  I  F   N ++        LE       
Sbjct: 952  YTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTF---NVLMNGFCLHGMLEDGEKLLN 1008

Query: 260  KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
             +L      +  ++N L+  +  +     A  IY+ M       DG TYE ++     + 
Sbjct: 1009 WMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNAR 1068

Query: 320  RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             +  A  LFQEMK + F  S + ++ L+    K  +   + +++ +M+  G      ++ 
Sbjct: 1069 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFD 1128

Query: 380  SLIESYAKAGKLDTALRLWDEM 401
               ++  K  + DT +   DE+
Sbjct: 1129 FFSDTKYKGKRPDTIVDPIDEI 1150


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 179/404 (44%), Gaps = 8/404 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P   C   L   L   R F  M SL   M   + +   +L +AY       A    L  
Sbjct: 38  LPPLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHL-- 95

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
                  +L +    D+ +Y   +  +   G+   A  ++  M    C     TY  ++ 
Sbjct: 96  -----TSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLH 150

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L  +G +  A+ +F  M+  +  P  +++A++V  + +AGR + +  +  E    G  P
Sbjct: 151 GLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEP 210

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +  +Y +LI+ Y  AG+++ AL++++ M      PN   +T +I    KSGK++ AM +F
Sbjct: 211 NIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLF 270

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           + M  AG  P   TY+ L++   + G +  A +L + M + GL P   T++ L+  L KR
Sbjct: 271 SRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKR 330

Query: 494 KLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
           + V+ A   L  +   G  V +V  + ++    K G +D A   ++ M S G   +    
Sbjct: 331 EKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSY 390

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L +   +      A  +LE  +E   +   V YT ++  LVR
Sbjct: 391 SSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVR 434



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 144/318 (45%), Gaps = 1/318 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y  L+   L  G+  +A  ++  M    C+ D   Y  M+  L ++GR + A  L +E 
Sbjct: 144 TYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEA 203

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
               F P+  ++ +L+D    AG ++ ++KV+  M G    P+   Y  LI    K+GK+
Sbjct: 204 MSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV 263

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A+ L+  M  AG  PN   +T +I+     G L  A  +   ME  G +P   T+S L
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++      +V+ A     S+   G++     YT+L+  L K   +D A +++ +M + G+
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 512 SVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D  S S ++    +   +  A   L  M   GI+ +      + +  ++    E  K 
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443

Query: 571 LLETYVESAAKVDLVLYT 588
           + +  + +    D+V YT
Sbjct: 444 IFDKMIATGINPDIVTYT 461



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 142/331 (42%), Gaps = 1/331 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN L+  + N G    A +++E M+   CS +  TY  +I  L KSG+++ A+ LF  M 
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV 274

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           E    P+   + +L+      G L  + ++   M+  G  P+   +  LI++  K  K++
Sbjct: 275 EAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVE 334

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A      +   G + N  ++T +I+   K+GK+D A  +   M   GF+P   +YS L+
Sbjct: 335 EAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           +      ++  A  +   M   G++    TYT ++  L +    +   KI  +M   G +
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D+    V +  Y ++G ++ A   +  M   G+  N      L        L   A   
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
            E  V    K +   YT +L  +V+     N
Sbjct: 515 FEVMVGKGWKPNEDSYTVLLRLVVKKSSSDN 545



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/450 (20%), Positives = 189/450 (42%), Gaps = 51/450 (11%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           + P    Y  L D    + + +  L +F+ M  +     +     Y  +I  L K+ K+E
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVR---TYTELIHGLCKSGKVE 264

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME--------------- 297
            +   F +++++  + +  +Y  L+    N+G    AF +   ME               
Sbjct: 265 RAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLI 324

Query: 298 --------------------KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                               K    ++   Y  +I  L K+G++DAA +L Q+M    F 
Sbjct: 325 DALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFV 384

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P  + ++SL+D + +  +L  +  +  +M   G + S   Y  +I+   +    +   ++
Sbjct: 385 PDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKI 444

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +D+M   G  P+   +T+ + S+ + G+++ A S+   M   G  P   TY+ L+  +A+
Sbjct: 445 FDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYAN 504

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI--LLEMKTMGYSV-D 514
            G V  A   +  M   G +P   +YT LL L+ K+   D +  I  + +MK +   + D
Sbjct: 505 LGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLED 564

Query: 515 VS------ASDVLMVYIKD----GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           ++      A+D+   +I+       ++ A  +   M ++ +  +  +   + + C +  +
Sbjct: 565 ITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKI 624

Query: 565 YESAKPLLETYVESAAKVDLVLYTSVLAHL 594
              A  LL++  +S     L  Y  +++ L
Sbjct: 625 LTDALTLLDSMTKSGYLPHLESYRIIISSL 654



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 109/249 (43%), Gaps = 15/249 (6%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D L      +G   +FD+M+       I  ++ +   ++   +  ++E +     
Sbjct: 425 YTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVF---VRSYCEEGRMEDAESMIV 481

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++D     +  +YN L+  + N GL  +AF  +E M       +  +Y +++  + K  
Sbjct: 482 QMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKS 541

Query: 320 RLDAAIK------------LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
             D ++             L +++ ER    + +I++  +  + +  RL+ +   +M MQ
Sbjct: 542 SSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQ 601

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
                PS  +Y S+I+   +   L  AL L D M  +G+ P+   + +II S  + G   
Sbjct: 602 NANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFR 661

Query: 428 IAMSIFTDM 436
            A  +F D+
Sbjct: 662 TAKEVFGDL 670


>gi|356510655|ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 712

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 128/519 (24%), Positives = 223/519 (42%), Gaps = 33/519 (6%)

Query: 268 IDTQSYNVLMTLFLN---KGLPY-KAFEIYE----SMEKGECSLDGSTYELMIPSLAKSG 319
           I TQ+   + T+F N   K L + K F + E     M      LD  TY  +I    K  
Sbjct: 179 IRTQNLLPMETIFYNVTMKSLRFGKQFGLIEDLAHQMIDNGVPLDNITYSTIISCAKKCN 238

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D A+  F+ M +    P    +++++D   + G+++  + +Y   +  G +P    + 
Sbjct: 239 LYDKAVHWFERMYKTGLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFS 298

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            L + + +AG  D    ++ EM   G +PN  ++  ++E+  K+GK   A  +F +M  +
Sbjct: 299 VLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIES 358

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G +P   T + +++++  +     A++L+  M   G       Y  LL + A   LV+ A
Sbjct: 359 GIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEA 418

Query: 500 AKILLEMKTMGYSVDVSASDVLM--VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
             +  +MK   +    S S   M  +Y   G VD A++    M   G+  N      L +
Sbjct: 419 ETLFRDMKQSVHCKPDSWSYTAMLNIYGSQGDVDKAMKLFDEMCKLGVELNVMGFTCLIQ 478

Query: 558 SCMKNAL-YESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616
            C+  A+ ++    + +  VE   K D  L   +L+ +   Q   +E  ++A L     K
Sbjct: 479 -CLGRAMEFDDLVRVFDISVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQQANPK 537

Query: 617 AHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRAR 676
             AF+  +     + ++     V+E F GI         R F N L++       + RA 
Sbjct: 538 LVAFIHLI-----EDEKTSFETVKEEFKGIMSNAAVEVRRPFCNCLIDICRNKDLLERAH 592

Query: 677 CVWKVAYENKLFPKAIVFDQHIA-WSLDVRNLSVGAALIAV---MHTLHRFRKRMLYYGV 732
            +  +     L+P   + ++ +  W LDVR+LSVGAAL A+   M TL +  KR      
Sbjct: 593 ELLYLGTLYGLYPG--LHNKTVEEWCLDVRSLSVGAALTALEEWMWTLTKIVKR---EET 647

Query: 733 VPRRIKLVTGP-------TLKIVIAQMLSSVESPFEVSK 764
           +P      TG         L I  A  L  + +PF+ S+
Sbjct: 648 LPELFLAQTGTGAHKFAQGLNISFASHLRKLAAPFKQSE 686



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 201/448 (44%), Gaps = 26/448 (5%)

Query: 158 LQFVPKMVHITQALKVIND----SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213
           L+ +P+ +    AL ++N       T+L L  W + Q+  +P +    + ++V  +S  F
Sbjct: 147 LEEIPRPISRENALLILNTLKPWQKTNLFL-NWIRTQN-LLPME---TIFYNVTMKSLRF 201

Query: 214 DGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
                L +++ H    NG+ L +  Y+ +I    K +  + +   F+++  +    D  +
Sbjct: 202 GKQFGLIEDLAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTGLMPDEVT 261

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y+ ++ ++   G   +   +YE         D  T+ ++     ++G  D    +FQEM+
Sbjct: 262 YSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEME 321

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
               +P+  ++ +L+++MGKAG+   +  ++ EM   G  P+     ++I+ Y KA    
Sbjct: 322 SVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKIYGKARWSR 381

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PTPSTYSCL 451
            AL LW  M+  G+  +F L+  ++   A  G ++ A ++F DM+++    P   +Y+ +
Sbjct: 382 DALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSVHCKPDSWSYTAM 441

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           L ++ S G VD AMKL++ M   G+   +  +T L+  L +    D   ++       G 
Sbjct: 442 LNIYGSQGDVDKAMKLFDEMCKLGVELNVMGFTCLIQCLGRAMEFDDLVRVFDISVERGI 501

Query: 512 SVDVSASDVLM--VYIKDGSVDHALRWLRFMGSSGIRTNNFI------------VRQLFE 557
             D      L+  V +  GS D   + L  +  +  +   FI            V++ F+
Sbjct: 502 KPDDRLCGCLLSVVSLSQGSNDEE-KVLACLQQANPKLVAFIHLIEDEKTSFETVKEEFK 560

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLV 585
             M NA  E  +P     ++     DL+
Sbjct: 561 GIMSNAAVEVRRPFCNCLIDICRNKDLL 588


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 154/328 (46%), Gaps = 1/328 (0%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           T +YN L+ +F   G+  +A  + + ME+  C  D  TY  ++ + A++G    A  + +
Sbjct: 323 TVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIE 382

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
            M ++   P+   + +++D+ GKAG+ D ++K++  M+  G  P+   Y +++    K  
Sbjct: 383 MMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKS 442

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           + +  +++  +M+  G  PN   +  I+      G       +F +M+  GF P   T++
Sbjct: 443 RSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFN 502

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+  +   G    A K+Y  MT AG    ++TY ALL  LA++        ++ +MK+ 
Sbjct: 503 TLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSK 562

Query: 510 GYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G+   + S S +L  Y K G+     R    +    I  +  ++R L  +  K      +
Sbjct: 563 GFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGS 622

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +     + +   K D+V++ S+L+   R
Sbjct: 623 ERAFTLFKKHGYKPDMVIFNSMLSIFTR 650



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYES 295
           AY  ++   ++  K E +   F+++ +        +YNV++ +F   G  + K   + E 
Sbjct: 219 AYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEE 278

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M       D  T   ++ + A+ G L  A   F E+K   + P    + +L+   GKAG 
Sbjct: 279 MRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGV 338

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              ++ V  EM+       +  Y  L+ +YA+AG    A  + + M   G  PN   +T 
Sbjct: 339 YTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTT 398

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+++ K+GK D A+ +F  M+ AG +P   TY+ +L M     + +  +K+   M S G
Sbjct: 399 VIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNG 458

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS 529
             P  +T+  +L L   + +     ++  EMK+ G+  D    + L+  Y + GS
Sbjct: 459 CFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 513



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/453 (20%), Positives = 183/453 (40%), Gaps = 71/453 (15%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           V L   L++S  ++  + LF+ +V  S+   + L    + VI+ L +    E  Y    K
Sbjct: 147 VSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKL---DHHVIEILVRILGRESQYSVAAK 203

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +LD   KI  Q Y                             LD   Y  ++ + +++G+
Sbjct: 204 LLD---KIPLQDY----------------------------MLDVRAYTTILHAYSRTGK 232

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR------------------------- 355
            + AI LF+ MKE    P+   +  ++D  GK GR                         
Sbjct: 233 YEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCS 292

Query: 356 -----------LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
                      L  +   + E++ CG+ P    Y +L++ + KAG    AL +  EM   
Sbjct: 293 TVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEEN 352

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
               +   +  ++ ++A++G    A  +   M + G +P   TY+ +++ +  +G+ D A
Sbjct: 353 NCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEA 412

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
           +KL+ SM  AG  P   TY A+L++L K+   +   K+L +MK+ G   + +  + ++  
Sbjct: 413 LKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILAL 472

Query: 525 IKDGSVDHAL-RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
             +  +D  + R  R M S G   +      L  +  +      A  +      +     
Sbjct: 473 CGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNAC 532

Query: 584 LVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616
           +  Y ++L  L R  D ++  ++++ + +   K
Sbjct: 533 VTTYNALLNALARKGDWRSGENVISDMKSKGFK 565



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 154/383 (40%), Gaps = 40/383 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  VI    KA K + +   F  + ++ C  +T +YN ++++   K    +  ++   M
Sbjct: 395 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDM 454

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +   C  + +T+  ++      G      ++F+EMK   F P  + F +L+ + G+ G  
Sbjct: 455 KSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE 514

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + K+Y EM   G       Y +L+ + A+ G   +   +  +M+  GF+P    ++++
Sbjct: 515 VDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLM 574

Query: 417 IESHAKSGK-----------------------------------LDIAMSIFTDMERAGF 441
           ++ +AK G                                    L  +   FT  ++ G+
Sbjct: 575 LQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGY 634

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P    ++ +L +   +   D A  +  S+   GL P L TY +L+ +  +R     A +
Sbjct: 635 KPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEE 694

Query: 502 ILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           IL  ++      D VS + V+  + + G +  A+R L  M   GIR   F          
Sbjct: 695 ILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYT 754

Query: 561 KNALYESAKPLLETYVESAAKVD 583
              +Y      +E  +E  AK D
Sbjct: 755 AMGMYGE----IEDVIECMAKND 773



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/249 (18%), Positives = 96/249 (38%), Gaps = 2/249 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYE 294
           + YN ++  LA+             +     K    SY++++  +  KG  Y   E I E
Sbjct: 534 TTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYA-KGGNYLGIERIEE 592

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            + +G+          ++ +  K   L  + + F   K+  ++P   IF S++    +  
Sbjct: 593 GINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNN 652

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
             D +  +   +   G  P    Y SL++ Y + G+   A  +   +  +  +P+   + 
Sbjct: 653 MYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYN 712

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+   + G +  A+ + ++M   G  P   TY+  +  + + G       +   M   
Sbjct: 713 TVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKN 772

Query: 475 GLRPGLSTY 483
             RP   T+
Sbjct: 773 DCRPNELTF 781


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 188/417 (45%), Gaps = 41/417 (9%)

Query: 132 ASAVAKIVEVVNRWKWG-PELETQLDKLQFVPKMVHITQALKVINDSDT-SLSLFRWAKR 189
           AS V K+  ++ ++    P+LE  L +   V +     + L    D+   +   F WA +
Sbjct: 48  ASDVEKVYRLLRKFHSRVPKLELALQESGVVLRNGLTERVLNRCGDAGILAYKFFVWASK 107

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           Q  Y    E Y  +  VL++ + F  + +L +EM  D+S                     
Sbjct: 108 QPCYRHCYENYKAMIKVLSKMKQFGAVWALLEEMRRDNS--------------------- 146

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
                      VL     I ++ + V+M  F +  +  KA E+ + M K  C  D   + 
Sbjct: 147 -----------VL-----ITSEVFVVVMRRFASSRMVNKAIEVLDEMPKYGCEPDEYVFG 190

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++ +L K+G +  A  LF++M+ R F PS   F  L+    K G+L  +  V ++M+  
Sbjct: 191 CLLDALCKNGSVKEAASLFEDMRVR-FSPSLKHFTCLLYGWCKEGKLLEAKHVLVQMREA 249

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P   +Y +L+  YA AGK+  A  L  E+R  G  PN   +T++I++     K+D A
Sbjct: 250 GFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRRKGCDPNATSYTILIQALCGQEKMDEA 309

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           M +F +MER+G      TY+ L+        +D   ++  SM   G  P   TY  L+  
Sbjct: 310 MRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQLTYLHLMLA 369

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI 545
             K++ ++   +++ EM+ +G   D+S  +V++ +  K G V+  +     M  SG+
Sbjct: 370 HEKKEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEMEVSGL 426



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/316 (19%), Positives = 121/316 (38%), Gaps = 37/316 (11%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++   A A K+  ++   K++    C  +  SY +L+     +    +A  ++  ME
Sbjct: 258 YNNLLSGYATAGKMGDAFDLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRVFVEME 317

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  D  TY  ++    K   +D   ++ Q M ++   P+   +  L+ +  K   L+
Sbjct: 318 RSGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQLTYLHLMLAHEKKEELE 377

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              ++  EMQ  G  P   +Y  +I    K G+++  +  W+EM ++G  P    F ++I
Sbjct: 378 ECKELMGEMQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEMEVSGLSPGLDTFVIMI 437

Query: 418 ESHAKSG-------------------------------------KLDIAMSIFTDMERAG 440
                 G                                     KL++A  +++ +   G
Sbjct: 438 NGFLGHGYLVEACQYFKEMVERGLLSSRQYGILKDLLNALLRGEKLELAKDLWSCIVTKG 497

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
                 +++  +    S+G V  A      M  A L P   T+  L+  L K      AA
Sbjct: 498 CELNVDSWTIWIHALFSNGHVKEACSYCLDMMDADLMPKPETFAKLMRGLRKLYNRQFAA 557

Query: 501 KILLEMKTMGYSVDVS 516
           +I  +++ M     V+
Sbjct: 558 EITEKVRKMAADRHVT 573



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 108/276 (39%), Gaps = 46/276 (16%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           ++Y  +IQ L   +K++ +   F ++  S C  D  +Y  L++ F    +  K ++I +S
Sbjct: 291 TSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQILQS 350

Query: 296 M-EKGE----------------------------------CSLDGSTYELMIPSLAKSGR 320
           M +KG                                   C  D S Y ++I    K G 
Sbjct: 351 MIQKGHMPNQLTYLHLMLAHEKKEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLGE 410

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV- 379
           ++A +  + EM+     P  + F  +++     G L  + + + EM   G   S    + 
Sbjct: 411 VNAGVDAWNEMEVSGLSPGLDTFVIMINGFLGHGYLVEACQYFKEMVERGLLSSRQYGIL 470

Query: 380 -SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             L+ +  +  KL+ A  LW  +   G   N   +T+ I +   +G +  A S   DM  
Sbjct: 471 KDLLNALLRGEKLELAKDLWSCIVTKGCELNVDSWTIWIHALFSNGHVKEACSYCLDMMD 530

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           A  +P P T++ L+             KLYN   +A
Sbjct: 531 ADLMPKPETFAKLMR---------GLRKLYNRQFAA 557


>gi|218194011|gb|EEC76438.1| hypothetical protein OsI_14128 [Oryza sativa Indica Group]
          Length = 669

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 133/579 (22%), Positives = 237/579 (40%), Gaps = 26/579 (4%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD +L LF EM HD S +     + YN ++   A     + S    + +L++    DT S
Sbjct: 30  FDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTAS 89

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y  ++  F   G   +  E++  M     + D S Y  ++ +  + G    A+ + ++M+
Sbjct: 90  YRHIVDAFAGAGNLSRVAELFAEMAATGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQ 149

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P+   +  L+D  G+ GR D   +++ EM+     P    Y  L   +   G   
Sbjct: 150 ADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMR-TTVPPDTATYNVLFRVFGDGGFFK 208

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             + L+ +M  +   P+      ++ +  + G  + A  +   +   G +PT   Y+ L+
Sbjct: 209 EVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLV 268

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGY 511
           E    +   + A   +N MT  G  P + TY AL    AK  L   A  I   M      
Sbjct: 269 EALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAI 328

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
             D  + D L+  Y +   +D A++    M  S    +   +  +  + C+   + ES +
Sbjct: 329 QKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 388

Query: 570 PLLETYVESAAKV-DLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA-HAFLCGLFTG 627
              E  ++S   V  ++ Y  +L+   R     +   L+  +   +  + H  +  +  G
Sbjct: 389 QFEE--LQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKG 446

Query: 628 P--EQRKQPVLSFV--REFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAY 683
              +     ++ +V       G DY L       F N LL+ L   GQ  RA  V   A 
Sbjct: 447 EYDDDSNWQMVEYVLDNSNLEGCDYSLR------FFNALLDVLWWFGQKGRAARVLDQAL 500

Query: 684 ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGP 743
           +  LFP+ +  D  + WS DV  +SVG +L+AV   L++   R+     +P+   +V   
Sbjct: 501 KYGLFPE-LFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDEDLPQLASVV--- 556

Query: 744 TLKIVIAQM-LSSVESPFEVSKVVLRAPGDSVMEWFKKP 781
              ++  QM  S+V     ++KVV     D++   F  P
Sbjct: 557 ---VLRGQMEKSTVTRGLPIAKVVYSFLNDTLSSSFHYP 592



 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 120/291 (41%), Gaps = 21/291 (7%)

Query: 305 GSTYELMIPSLAKSGR----LDAAIKLFQEMKER---NFRPSFNIFASLVDSMGKAGRLD 357
            +TY  ++ + A++       D  + LF EM+     + RP    + +L+ +       D
Sbjct: 10  AATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSD 69

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            S  +   M   G  P    Y  +++++A AG L     L+ EM   G  P+   +  ++
Sbjct: 70  QSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHTPDPSAYLGLM 129

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E+H + G    A+++   M+  G  PT +TY  LL+++   G+ D   +L+  M +  + 
Sbjct: 130 EAHTRVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VP 188

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV-DHALRW 536
           P  +TY  L  +           ++  +M       D+   + +MV    G + + A   
Sbjct: 189 PDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREV 248

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAK------------PLLETY 575
           L ++ + G+         L E+    A+YE A             P +ETY
Sbjct: 249 LDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETY 299



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 33/241 (13%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHD---------------------------- 226
           P    Y +LF V  +   F  ++ LF +M+H                             
Sbjct: 189 PDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREV 248

Query: 227 ----SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
               +++  +    AY  +++ L  A   E +Y  F  + +       ++YN L   F  
Sbjct: 249 LDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAK 308

Query: 283 KGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
            GL  +A  I+  M        D  +++ +I +  +  +LD A+K + EM++  F P   
Sbjct: 309 GGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDER 368

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
               ++++   AG +D S + + E+Q     PS   Y  ++  YA+  +   A  L +EM
Sbjct: 369 SLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 428

Query: 402 R 402
           +
Sbjct: 429 K 429


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTREHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V    K+L EM+  G+   V   +VLM
Sbjct: 387 ARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 143/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 71  DJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 250

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSV 310

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A    + M    IR +      L     +      
Sbjct: 311 KGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVD 370

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 371 AEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 140/311 (45%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFD 166

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 226

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 227 KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYN 286

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +DSA +    M   
Sbjct: 287 TLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQE 346

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   D  + + ++  + K G V   
Sbjct: 347 NIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKG 406

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 407 XKLLKEMQRDG 417


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 161/366 (43%), Gaps = 5/366 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN VI+ L +   L  +      ++ S  + D  ++N L+  +        A ++++ M
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                + D  +Y  +I    ++GR+D A++LF EM +    P  +++A+LV  + KAGR 
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ----PDMHMYAALVKGLCKAGRG 128

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +  + +   M+  G RPS   Y ++++      K   A  +  EM   G  P     T +
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++ K G++  A+ +   M+  G  P   TY+ L++   + G+V  AM L N M   G+
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGV 248

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P   TY  L+        ++ A ++L  M+  G   D    + L+    KDG  D A  
Sbjct: 249 NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACS 308

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               + + GI+ N      L     K+   + A   LE  V +    D   Y+S + HL 
Sbjct: 309 LFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLC 368

Query: 596 RCQDEQ 601
           + +  Q
Sbjct: 369 KMKGSQ 374



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 162/361 (44%), Gaps = 5/361 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I    + ++++++   F K+       D  SY  L+  F   G   +A E++  M
Sbjct: 48  TFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEM 107

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++     D   Y  ++  L K+GR +  + + + MKE  +RPS   +A++VD      + 
Sbjct: 108 DQP----DMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKA 163

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++  EM   G  P      ++I +Y K G++  ALR+ + M++ G +PN   +  +
Sbjct: 164 KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNAL 223

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++     GK+  AM++   M   G  P   TY+ L+      G ++SA +L   M   GL
Sbjct: 224 VQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGL 283

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
                TY AL+  L K    D A  +   ++T G   + V+ + ++    K G VD A +
Sbjct: 284 IADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWK 343

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           +L  M S+G   + +      E   K    +     +   ++   K   V YT V+  L+
Sbjct: 344 FLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLL 403

Query: 596 R 596
           +
Sbjct: 404 K 404



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 137/307 (44%), Gaps = 1/307 (0%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           CK +  +YN L+  F N+G  +KA  +   M     + D  TY L+I      G +++A 
Sbjct: 213 CKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAF 272

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +L + M+          + +L++++ K GR D +  ++  ++  G +P+A  + SLI   
Sbjct: 273 RLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 332

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K+GK+D A +  ++M  AG  P+   ++  IE   K       +S   +M +    P+ 
Sbjct: 333 CKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPST 392

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
             Y+ ++             + +  M S+G  P + TYT  +        ++ A  +L+E
Sbjct: 393 VNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLME 452

Query: 506 MKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           M   G +VD  A + LM  +   G  DHA+  L+ M S     N F    L    ++  L
Sbjct: 453 MSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRL 512

Query: 565 YESAKPL 571
            E   PL
Sbjct: 513 VEDVLPL 519



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 176/436 (40%), Gaps = 49/436 (11%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L +   E+   D  + LF EM     +  + +++A   +++ L KA + E      +
Sbjct: 84  YAALIEGFCETGRIDEAVELFGEM----DQPDMHMYAA---LVKGLCKAGRGEEGLLMLR 136

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKG--ECSLDGSTYELMIPSLA 316
           ++ +   +  T++Y  ++     +    +A E+ + M EKG   C +   T   +I +  
Sbjct: 137 RMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVV---TCTAVINAYC 193

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           K GR+  A+++ + MK R  +P+   + +LV      G++  +M +  +M+ CG  P A 
Sbjct: 194 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAV 253

Query: 377 MYV-----------------------------------SLIESYAKAGKLDTALRLWDEM 401
            Y                                    +LI +  K G+ D A  L+D +
Sbjct: 254 TYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 313

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G +PN   F  +I    KSGK+DIA      M  AG  P   TYS  +E        
Sbjct: 314 ETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 373

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDV 520
              +     M    ++P    YT ++  L K +   + A+   EM + G + DV + +  
Sbjct: 374 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 433

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  Y  +G ++ A   L  M  +G+  +      L +        + A  +L+     A+
Sbjct: 434 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 493

Query: 581 KVDLVLYTSVLAHLVR 596
             +   Y  +L HLVR
Sbjct: 494 VPNQFTYFILLRHLVR 509



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 142/368 (38%), Gaps = 57/368 (15%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L + L +    D   SLFD +     K N ++    +N +I  L K+ K+++++   
Sbjct: 290 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVT----FNSLINGLCKSGKVDIAWKFL 345

Query: 259 KKVLDSDCKIDTQSYNVLM-------------------------------TLFLNKGLPY 287
           +K++ + C  DT +Y+  +                               T+ ++K L  
Sbjct: 346 EKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKE 405

Query: 288 KAFEI----YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           + + +    +  M    C+ D  TY   + +    GRL+ A  +  EM +         +
Sbjct: 406 RNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAY 465

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA----------------- 386
            +L+D     G+ D ++ +  +M      P+   Y  L+                     
Sbjct: 466 NTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVW 525

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           KA +L     L+D M+   F PN G ++ I+E  ++ G+ + A S+ + M+         
Sbjct: 526 KAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNED 585

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            Y+ L+     S +   A  L  SM   G  P L +Y  LL+ L      D A +I +  
Sbjct: 586 IYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNS 645

Query: 507 KTMGYSVD 514
           +   YS D
Sbjct: 646 RWKDYSPD 653



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 113/259 (43%), Gaps = 18/259 (6%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
            +G L+  + ++ + SKNG+++ + AYN ++   A   + + +    K++       +  
Sbjct: 439 IEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQF 498

Query: 272 SYNVLM-----------TLFLNKGLPYKAFEI------YESMEKGECSLDGSTYELMIPS 314
           +Y +L+            L L     +KA E+      ++ M+K E   +  TY  ++  
Sbjct: 499 TYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEG 558

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            ++ GR + A  L   MKE +   + +I+ +LV    K+ R   +  +   M   G  P 
Sbjct: 559 FSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPH 618

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  L+      G+ D A  ++   R   + P+  ++ +II+   K G  DI+  +  
Sbjct: 619 LMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMII 678

Query: 435 DMERAGFLPTPSTYSCLLE 453
            +ER    P+  TY+ L E
Sbjct: 679 MLERMNCRPSHQTYAMLTE 697



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 124/310 (40%), Gaps = 20/310 (6%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LS   EM+    K        Y  VI  L K     +    + +++ S C  D  +Y   
Sbjct: 377 LSFIGEMLQKDVKPSTV---NYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 433

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +  +G   +A  +   M K   ++D   Y  ++   A  G+ D A+ + ++M     
Sbjct: 434 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 493

Query: 337 RPS----FNIFASLVD-------------SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            P+    F +   LV               + KA  L     ++  M+     P++  Y 
Sbjct: 494 VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYS 553

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           S++E +++ G+ + A  L   M+      N  ++T ++    KS +   A  +   M + 
Sbjct: 554 SILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQH 613

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           GF+P   +Y  LL      GQ D A +++ +       P    +  ++  L K+   D++
Sbjct: 614 GFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDIS 673

Query: 500 AKILLEMKTM 509
            ++++ ++ M
Sbjct: 674 REMIIMLERM 683



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 93/244 (38%), Gaps = 17/244 (6%)

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA----------- 316
           +DT +YN LM    + G    A  I + M       +  TY +++  L            
Sbjct: 460 VDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPL 519

Query: 317 ------KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
                 K+  L     LF  MK+  F P+   ++S+++   + GR + +  +   M+   
Sbjct: 520 TPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDS 579

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
              +  +Y +L+  + K+ +   A  L   M   GF P+   +  ++      G+ D A 
Sbjct: 580 ISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAK 639

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            IF +     + P    +  +++     G  D + ++   +     RP   TY  L   L
Sbjct: 640 EIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEEL 699

Query: 491 AKRK 494
             R+
Sbjct: 700 PDRE 703


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 163/353 (46%), Gaps = 2/353 (0%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMS 254
           G E  V  +  L       G+L +   + H  S++G+   +  YN +I  L +  +++ +
Sbjct: 350 GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 409

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +     +  + C  +  +YN ++  +   G P KA  +  +M +   S +  TY  +I  
Sbjct: 410 FVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
              SG   +A+++   M++   +P    +  L+    K  +++++  ++ EM   G  P+
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +LI+ Y K  KLDTA  L + M+ +G RPN   + ++I    K      A  +  
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 589

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G  P   TY+ +++    +G    A++++N M   G  P L TY++L+  L +  
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
            V+ A  +  E++  G   D ++   ++  YI  G V+HA  +L  M  +G +
Sbjct: 650 KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 173/382 (45%), Gaps = 16/382 (4%)

Query: 228 SKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
           S++G+ +   AY+ ++ +L++          + ++L    + +   YN ++      G  
Sbjct: 172 SQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNV 231

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
             A  I + + + E S D  TY  MI    +   LD+A+++F +M +    P+   +++L
Sbjct: 232 ADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTL 291

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           ++ +  +GR++ +  +  EM   G  P+A      I +    G  + A RL+ +M+  G 
Sbjct: 292 INGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGC 351

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            PN   +T +I     SG L +A+ +F  M R G  P   TY+ L+ +   + ++  A  
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 467 LYNSMTSAGLRPGLSTYTALL---TLLAKRKLVDVAAKILLEMKTM---GYSVD-VSASD 519
           + N M   G  P + TY  ++    +L   K      K +L M  M   G+S + V+ + 
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPK------KAMLVMNNMLQRGHSANLVTYNT 465

Query: 520 VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           ++  Y   G+   ALR L  M   G + + +   +L     K +  ESA  L    V+  
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525

Query: 580 AKVDLVLYTSVLAHLVRCQDEQ 601
              + V YT+++     C+DE+
Sbjct: 526 LCPNEVTYTALIDGY--CKDEK 545



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 162/395 (41%), Gaps = 36/395 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN VI  L K   +  +    KKV +S+   DT +Y  ++     K     A +++  M 
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K  C  +  TY  +I  L  SGR++ A  L +EM      P+ +     + ++   G  +
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYE 337

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM---------------- 401
            + +++++M+  G  P+   Y +LI     +G L  A+ L+  M                
Sbjct: 338 DAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 397

Query: 402 -------RIA------------GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
                  RI             G  PN   +  +I+ +   G    AM +  +M + G  
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHS 457

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
               TY+ +++ +  SG   SA+++ + M   G +P   +YT L+    K   ++ A  +
Sbjct: 458 ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGL 517

Query: 503 LLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             EM   G    +V+ + ++  Y KD  +D A   L  M  SG R N      L     K
Sbjct: 518 FNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTK 577

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +  A+ L +  +E     ++V YT+++  L +
Sbjct: 578 QNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 612



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 142/349 (40%), Gaps = 6/349 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAY 238
           ++ LF    R   + P    Y  L ++L E+R       + + M     +NG S     Y
Sbjct: 374 AIGLFHRMSRDGVF-PNTVTYNALINILVENRRIKYAFVVLNLM----GRNGCSPNIVTY 428

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I+        + +      +L      +  +YN ++  + + G    A  I + M  
Sbjct: 429 NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRD 488

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
           G C  D  +Y  +I    K  ++++A  LF EM +    P+   + +L+D   K  +LDT
Sbjct: 489 GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDT 548

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  +   M+  G RP+   Y  LI    K      A  L   M   G  PN   +T +I+
Sbjct: 549 ATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMID 608

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
              K+G   +A+ +F  M   G LP   TYS L+      G+V+ A  L+  +   GL P
Sbjct: 609 GLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
              TY  ++        V+ A   L  M   G    +    VL+  +K+
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 26/370 (7%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM- 296
           YN +I+    +     +      + D  CK D  SY  L+  F        AF ++  M 
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           + G C  +  TY  +I    K  +LD A  L + MK    RP+   +  L+  + K    
Sbjct: 523 DDGLCP-NEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 581

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++   M   G  P+   Y ++I+   K G    AL ++++M   G  PN   ++ +
Sbjct: 582 SGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 641

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I +  + GK++ A ++F ++ER G +P   TY  ++E +  SG+V+ A      M  AG 
Sbjct: 642 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 701

Query: 477 RPGLSTYTALLT------LLAKRKLVDVAAKILLEMKTMGY-SVDVSASDVLMVYIKDGS 529
           +P L TY  L+       LLA ++L   A   ++   + GY + D  A  V+   + +  
Sbjct: 702 QPTLWTYGVLIKGLKNEYLLADQRL--AALPDVVPNCSFGYQTTDQDAVSVMSAKLAE-- 757

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +D  L          ++  N +V  L  +      +  A  LL + +      D   Y S
Sbjct: 758 LDPGL---------SVQVQNALVSNLSTA----GRWFEANELLGSMISQGLCPDQEAYNS 804

Query: 590 VLAHLVRCQD 599
           +L  L+R ++
Sbjct: 805 LLCSLLRVRN 814



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 172/420 (40%), Gaps = 9/420 (2%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           +D D++L +F    ++    P    Y  L + L +S   +    L  EM+     +GI L
Sbjct: 264 HDLDSALQVFNQMAKEGCE-PNTVTYSTLINGLCDSGRVNEAFDLIREMI----LHGI-L 317

Query: 235 FSAYNRVIQYLAKADK--LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
            +A+      +A  D    E ++  F  + +  C+ +  +Y  L++     GL   A  +
Sbjct: 318 PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGL 377

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  M +     +  TY  +I  L ++ R+  A  +   M      P+   +  ++     
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G    +M V   M   GH  +   Y ++I+ Y  +G   +ALR+ D MR  G +P+   
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +T +I    K  K++ A  +F +M   G  P   TY+ L++ +    ++D+A  L   M 
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVD 531
            +G RP + TY  L+  L K+     A ++   M   G +   V+ + ++    K+GS  
Sbjct: 558 RSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTS 617

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            AL     M   G   N      L  +  +    E A+ L           D + Y  ++
Sbjct: 618 LALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 164/382 (42%), Gaps = 31/382 (8%)

Query: 163 KMVHITQALKVINDSDTSLSLFRWAK--RQSWYVPGDECYVMLFDVLNESRDFDGMLSLF 220
            +V     +K   DS  + S  R     R     P +  Y  L     +    +    LF
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518

Query: 221 DEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           +EMV D    N ++    Y  +I    K +KL+ +    + +  S C+ + Q+YNVL+  
Sbjct: 519 NEMVDDGLCPNEVT----YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHG 574

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
              +     A E+ + M +     +  TY  MI  L K+G    A+++F +M E+   P+
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              ++SL+ ++G+ G+++ +  ++ E++  G  P    YV +IE+Y  +GK++ A     
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKL-DIAMSIFTDM---------------------E 437
            M  AG +P    + ++I+       L D  ++   D+                     +
Sbjct: 695 RMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAK 754

Query: 438 RAGFLPTPSTY--SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
            A   P  S    + L+   +++G+   A +L  SM S GL P    Y +LL  L + + 
Sbjct: 755 LAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRN 814

Query: 496 VDVAAKILLEMKTMGYSVDVSA 517
           VD+A  +   M T G  V ++ 
Sbjct: 815 VDLAMGVFKHMSTQGCEVHLNG 836



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 107/262 (40%), Gaps = 1/262 (0%)

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           + +   R     +++L+  + + G     M  Y  M   G +P+  +Y ++I +  K G 
Sbjct: 171 LSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGN 230

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +  A  +  ++  +   P+   +T +I  H +   LD A+ +F  M + G  P   TYS 
Sbjct: 231 VADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYST 290

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L+     SG+V+ A  L   M   G+ P   T T  +  L      + A ++ ++MK  G
Sbjct: 291 LINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKG 350

Query: 511 YSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
              +V     L+  +   G +  A+     M   G+  N      L    ++N   + A 
Sbjct: 351 CEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAF 410

Query: 570 PLLETYVESAAKVDLVLYTSVL 591
            +L     +    ++V Y  ++
Sbjct: 411 VVLNLMGRNGCSPNIVTYNEMI 432


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 147/313 (46%), Gaps = 1/313 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ VI    K   L+ +Y  + ++LD     +  +YN ++          KA E+  +M
Sbjct: 14  SYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 73

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     D  TY  ++     SG+   AI   ++M+     P    + SL+D + K GR 
Sbjct: 74  VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 133

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + K++  M   G +P    Y +L++ YA  G L     L D M   G  PN  +F+++
Sbjct: 134 TEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 193

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + ++AK  K++ AM +F+ M + G  P   TY  ++++   SG+V+ AM  +  M   GL
Sbjct: 194 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGL 253

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           RP    Y +L+  L      + A ++ LEM   G  +  +  + ++  + K+G V  +++
Sbjct: 254 RPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVK 313

Query: 536 WLRFMGSSGIRTN 548
               M   G++ +
Sbjct: 314 LFDLMVRIGVKPD 326



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 137/296 (46%), Gaps = 1/296 (0%)

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           + G+C  D  +Y  +I    K G LD     + EM ++   P+   + S++ ++ KA  +
Sbjct: 4   DGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTV 63

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +M+V   M   G  P    Y S++  +  +G+   A+    +MR  G  P+   +  +
Sbjct: 64  DKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSL 123

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K+G+   A  IF  M + G  P  +TY  LL+ +A+ G +     L + M   G+
Sbjct: 124 MDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 183

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P    ++ L+   AK++ V+ A  +  +M+  G + + V+   V+ V  K G V+ A+ 
Sbjct: 184 HPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAML 243

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +   M   G+R ++ +   L  S      +E A+ L    ++    +  + + S++
Sbjct: 244 YFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSII 299



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 119/246 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++     + + + +    KK+     + D  +YN LM      G   +A +I++SM
Sbjct: 84  TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 143

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     D +TY  ++   A  G L     L   M      P+  +F+ LV +  K  ++
Sbjct: 144 TKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKV 203

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +M V+ +M+  G  P+A  Y ++I+   K+G+++ A+  +++M   G RP+  ++  +
Sbjct: 204 EEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSL 263

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I S     K + A  +F +M   G   +   ++ +++ H   G+V  ++KL++ M   G+
Sbjct: 264 IHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGV 323

Query: 477 RPGLST 482
           +P + T
Sbjct: 324 KPDIIT 329


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 185/425 (43%), Gaps = 7/425 (1%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           INDS ++ +LF+ AK +   + G     +++  +  +    G +   +E+V +  ++GI 
Sbjct: 325 INDSQSADNLFKEAKTKLSSLNG-----IIYSNIIHAHCQSGNMERAEELVREMEEDGID 379

Query: 234 L-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
                Y+ ++               F+++ +   K    SY  L+ L++  G   KA  I
Sbjct: 380 APIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSI 439

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            + ME      +  TY ++I           A  +F+EM     +P   I+  L+++  K
Sbjct: 440 SKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCK 499

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G +D ++ +  +MQ    +PS   +  +IE YA AG + +AL   D MR +G  P    
Sbjct: 500 MGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMT 559

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  +I    +  K+  A+S+   M  AG  P   TY+ ++  +A+SG +  A + +  + 
Sbjct: 560 YNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 619

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
            +GL+  +  Y  LL    K   +  A  +  EM       +    ++L+  + + G V 
Sbjct: 620 ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVW 679

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   ++ M   G+  N         +C K    + A+ ++E  V+   K ++  YT+++
Sbjct: 680 EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLI 739

Query: 592 AHLVR 596
               R
Sbjct: 740 KGWAR 744



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 164/361 (45%), Gaps = 6/361 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           +RD  G LS  +EM       G+ L    Y+ +I   AK +  + +   FK+       +
Sbjct: 290 ARDMRGALSCVEEM----KSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSL 345

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +   Y+ ++      G   +A E+   ME+         Y  M+         +  + +F
Sbjct: 346 NGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVF 405

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           + +KE  F+PS   +  L++   K G++  ++ +  EM+ CG + +   Y  LI  +   
Sbjct: 406 ERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHL 465

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
                A  +++EM  +G +P+  ++ ++IE+  K G +D A+ I   M++    P+   +
Sbjct: 466 HDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAF 525

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             ++E +A +G + SA+   + M  +G  P + TY AL+  L ++  V  A  +L +M  
Sbjct: 526 RPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSI 585

Query: 509 MGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G + +     ++M  Y   G +  A  +   +  SG++ + +I   L  +C K+   +S
Sbjct: 586 AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQS 645

Query: 568 A 568
           A
Sbjct: 646 A 646



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 162/360 (45%), Gaps = 1/360 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  ++    K  K+  +    K++     K + ++Y++L+  F++      AF I+E M
Sbjct: 419 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 478

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D + Y L+I +  K G +D AI + ++M++   +PS   F  +++    AG +
Sbjct: 479 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDM 538

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            +++     M+  G  P+   Y +LI    +  K+  A+ + D+M IAG  PN   +T+I
Sbjct: 539 KSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTII 598

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  +A SG +  A   FT ++ +G       Y  LL     SG++ SA+ +   M+   +
Sbjct: 599 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 658

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
                 Y  L+   A+R  V  A  ++ +MK  G   ++ + +  +    K G +  A +
Sbjct: 659 PRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEK 718

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            +  M   G++ N      L +   + +L + A    E    +  K D   Y  ++  L+
Sbjct: 719 VIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLL 778



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 145/336 (43%), Gaps = 40/336 (11%)

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSY 255
           ++ Y ML +      DF    ++F+EM+    ++G+    A YN +I+   K   ++ + 
Sbjct: 452 NKTYSMLINGFIHLHDFANAFAIFEEML----RSGLQPDRAIYNLLIEAFCKMGNMDRAI 507

Query: 256 CCFKKV-------------------------------LD----SDCKIDTQSYNVLMTLF 280
           C  +K+                               LD    S C     +YN L+   
Sbjct: 508 CILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGL 567

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
           + K    +A  + + M     + +  TY +++   A SG +  A + F ++KE   +   
Sbjct: 568 VRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 627

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
            I+ +L+ +  K+GR+ +++ V  EM       +  +Y  LI+ +A+ G +  A  L  +
Sbjct: 628 YIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQ 687

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M+  G  PN   +T  I +  K+G +  A  +  +M   G  P   TY+ L++  A    
Sbjct: 688 MKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSL 747

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            D A+K +  M  AGL+P  ++Y  L+T L  R  V
Sbjct: 748 PDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATV 783



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/360 (18%), Positives = 153/360 (42%), Gaps = 7/360 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           + RV++  ++ D  +     F+++     K   + + +++  +  +G  + A   +E+M 
Sbjct: 216 FRRVVE--SRPDNWQAVVSAFERIP----KPSRREFGLMIVYYAKRGDKHHARATFENMR 269

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +   +  ++ + A +  +  A+   +EMK      +   ++ L+    K     
Sbjct: 270 ARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQ 329

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           ++  ++ E +      +  +Y ++I ++ ++G ++ A  L  EM   G      ++  ++
Sbjct: 330 SADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMM 389

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             +      +  + +F  ++  GF P+  +Y CLL ++   G+V  A+ +   M S G++
Sbjct: 390 HGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIK 449

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
               TY+ L+           A  I  EM   G   D +  ++L+  + K G++D A+  
Sbjct: 450 HNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICI 509

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M    ++ +N   R + E        +SA   L+    S     ++ Y +++  LVR
Sbjct: 510 LEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVR 569


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 118/507 (23%), Positives = 223/507 (43%), Gaps = 20/507 (3%)

Query: 101 SVIYTGKGIRSVEP------GFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQ 154
           SV+    G R VE         +DH    G+K    + +   +++    R++   ++  +
Sbjct: 221 SVLMLAFGKRDVETVVWLLREMEDH----GVKPNVYSYTICIRVLGQAGRFEEAYKILQK 276

Query: 155 LDKLQFVPKMVHITQALKVINDS---DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESR 211
           ++     P +V  T  ++++ D+     +  +F W  + S   P    Y+ L D   ++ 
Sbjct: 277 MEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVF-WKMKASDQKPDRVTYITLLDKCGDNG 335

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           D   ++ +++ M  D   + +    AY  V+  L +  +++ +   F ++     +    
Sbjct: 336 DSRSVIEIWNAMKADGYNDNVV---AYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQY 392

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           SYN L++ FL       A E++  M     + +G TY L I    KSG    AIK ++ M
Sbjct: 393 SYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELM 452

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           K +   P      +++ S+ K+GRL  + +V+ E++  G  P    Y  +I+  +KA   
Sbjct: 453 KSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNA 512

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D A++++ EM      P+      +I++  K+G+ + A  IF +++     PT  TY+ L
Sbjct: 513 DEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTL 572

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           L      G+V   M L   M S    P L TY  +L  L K   V+ A  +L  M   G 
Sbjct: 573 LAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGC 632

Query: 512 SVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D+S+ +  L   +K+  +  A R    M    +  +   +  +  S +KN L   A  
Sbjct: 633 MPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKV-LAPDYTTLCTILPSFVKNGLMNEALH 691

Query: 571 LLETYV-ESAAKVDLVLYTSVLAHLVR 596
            L+ Y+ +  +K D   + S++  +++
Sbjct: 692 TLKEYILQPGSKADRSSFHSLMEGILK 718



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 184/439 (41%), Gaps = 40/439 (9%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y +L     + RD + ++ L  EM     K  +    +Y   I+ L +A + E 
Sbjct: 214 VPSVRTYSVLMLAFGK-RDVETVVWLLREMEDHGVKPNVY---SYTICIRVLGQAGRFEE 269

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y   +K+ D  CK D  +  VL+ +  + G    A +++  M+  +   D  TY  ++ 
Sbjct: 270 AYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLD 329

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
               +G   + I+++  MK   +  +   + ++VD++ + GR+D +  V+ +M+  G  P
Sbjct: 330 KCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEP 389

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE--------------- 418
               Y SLI  + KA +L+ AL L++ M I G  PN   + + I                
Sbjct: 390 QQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRY 449

Query: 419 --------------------SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
                               S AKSG+L +A  +F +++  G  P   TY+ +++  + +
Sbjct: 450 ELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKA 509

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSA 517
              D AMK+++ M      P +    +L+  L K    + A KI  E+K M     D + 
Sbjct: 510 SNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTY 569

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           + +L    ++G V   +  L  M S+    N      + +   KN     A  +L     
Sbjct: 570 NTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTM 629

Query: 578 SAAKVDLVLYTSVLAHLVR 596
                DL  Y + L  LV+
Sbjct: 630 KGCMPDLSSYNTALHGLVK 648



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 159/317 (50%), Gaps = 1/317 (0%)

Query: 241  VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
            +I++L K+ K   ++   KK       + T SYN L+   +++ L   A  ++  M++  
Sbjct: 747  LIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLG 806

Query: 301  CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            C  D  TY L++ ++ KS R++  +K+ +EM  + +  ++  + +++  + K+  L  +M
Sbjct: 807  CDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAM 866

Query: 361  KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             +Y ++   G  P+   Y  L++   K GK++ A  L+DEM   G +PN  ++ +++  +
Sbjct: 867  DLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGY 926

Query: 421  AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
              +G  +    +F +M   G  P   +Y+ L+    ++G+++ ++  +  +T  GL P L
Sbjct: 927  RLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDL 986

Query: 481  STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRF 539
             TY  L+  L +   ++ A  +  +M+  G + ++   + L++Y+ K+G    A +    
Sbjct: 987  ITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEE 1046

Query: 540  MGSSGIRTNNFIVRQLF 556
            +  +G + N F    L 
Sbjct: 1047 LLKNGWKPNVFTYNALI 1063



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 139/309 (44%), Gaps = 4/309 (1%)

Query: 178  DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
            D +  LF   KR     P +  Y ++ D + +S   + ML +  EM     K   S +  
Sbjct: 793  DVAEGLFSEMKRLGC-DPDEFTYNLILDAMGKSMRIEDMLKVQKEM---HCKGYESTYVT 848

Query: 238  YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            YN +I  L K+  L  +   + K++         +Y  L+   L  G    A ++++ M 
Sbjct: 849  YNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEML 908

Query: 298  KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               C  + + Y +++     +G  +   +LFQ M ++   P    +  L+ ++  AGRL+
Sbjct: 909  DYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLN 968

Query: 358  TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             S+  + ++   G  P    Y  LI    ++G+L+ A+ L+++M  +G  PN   +  +I
Sbjct: 969  DSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLI 1028

Query: 418  ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                K GK   A  ++ ++ + G+ P   TY+ L+  ++ SG  D+A   Y  M   G  
Sbjct: 1029 LYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCP 1088

Query: 478  PGLSTYTAL 486
            P  STY  L
Sbjct: 1089 PNSSTYMQL 1097



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 96/491 (19%), Positives = 196/491 (39%), Gaps = 39/491 (7%)

Query: 142 VNRWKWGPELETQLDKLQFVPKMVHITQALK-VINDSDTSLSLFRWAKRQSWYVPGDECY 200
            +R     +L    D+ +  P   ++   L+    D   +L LF+   +Q   V   E  
Sbjct: 56  TSRRAGSNKLAPPCDEREGRPGAQNVVHMLRSAAADPAEALQLFKSVAQQPRIVHTTESC 115

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
             + +++        M  +FD M     K  +  F     + + L     L  +      
Sbjct: 116 NYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLT---IFRSLGMEGGLRSAPVALPM 172

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE-------------------------- 294
           + ++   +++ +YN L+   +  G   +A E+Y+                          
Sbjct: 173 MKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRDV 232

Query: 295 --------SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
                    ME      +  +Y + I  L ++GR + A K+ Q+M++   +P       L
Sbjct: 233 ETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVL 292

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +  +  AGR+  +  V+ +M+    +P    Y++L++     G   + + +W+ M+  G+
Sbjct: 293 IQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGY 352

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
             N   +T ++++  + G++D A  +F  M++ G  P   +Y+ L+     + +++ A++
Sbjct: 353 NDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALE 412

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD-VLMVYI 525
           L+N M   G  P   TY   +    K      A K    MK+ G   DV A + VL    
Sbjct: 413 LFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLA 472

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           K G +  A R    + S G+  +N     + + C K +  + A  +    +E+    D++
Sbjct: 473 KSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVL 532

Query: 586 LYTSVLAHLVR 596
              S++  L +
Sbjct: 533 AVNSLIDTLYK 543



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 123/251 (49%)

Query: 237  AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             YN ++  + K+ ++E      K++     +    +YN +++  +   + Y+A ++Y  +
Sbjct: 813  TYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKL 872

Query: 297  EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                 S    TY  ++  L K G+++ A  LF EM +   +P+  I+  L++    AG  
Sbjct: 873  MSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNT 932

Query: 357  DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            +   +++  M   G  P    Y  LI +   AG+L+ +L  + ++   G  P+   + ++
Sbjct: 933  EKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLL 992

Query: 417  IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
            I    +SG+L+ A+S+F DME++G  P   TY+ L+      G+   A K+Y  +   G 
Sbjct: 993  IHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGW 1052

Query: 477  RPGLSTYTALL 487
            +P + TY AL+
Sbjct: 1053 KPNVFTYNALI 1063



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/438 (21%), Positives = 173/438 (39%), Gaps = 39/438 (8%)

Query: 193  YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
            Y P    Y  + D L ++ + +  L +   M   + K  +   S+YN  +  L K D+L 
Sbjct: 597  YPPNLITYNTVLDCLCKNGEVNYALGMLYNM---TMKGCMPDLSSYNTALHGLVKEDRLT 653

Query: 253  MSY---CCFKKVLDSD----CKI----------------------------DTQSYNVLM 277
             ++   C  KKVL  D    C I                            D  S++ LM
Sbjct: 654  EAFRIFCQMKKVLAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLM 713

Query: 278  TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
               L +    K+ E  E++      LD      +I  L KS +   A +L ++ +     
Sbjct: 714  EGILKRAGMEKSIEFAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVS 773

Query: 338  PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
                 + +L+  +     +D +  ++ EM+  G  P    Y  ++++  K+ +++  L++
Sbjct: 774  LKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKV 833

Query: 398  WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
              EM   G+   +  +  II    KS  L  AM ++  +   GF PTP TY  LL+    
Sbjct: 834  QKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLK 893

Query: 458  SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
             G+++ A  L++ M   G +P  + Y  LL         +   ++   M   G + D+ +
Sbjct: 894  DGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKS 953

Query: 518  SDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
              VL+      G ++ +L + R +   G+  +      L     ++   E A  L     
Sbjct: 954  YTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDME 1013

Query: 577  ESAAKVDLVLYTSVLAHL 594
            +S    +L  Y S++ +L
Sbjct: 1014 KSGIAPNLYTYNSLILYL 1031



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 13/243 (5%)

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           ++E     G++    +++D M+    + N G F  I  S    G L  A      M+ AG
Sbjct: 118 MLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKEAG 177

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
            +    TY+ L+     SG    AM++Y  M + G+ P + TY+ L+    KR  V+   
Sbjct: 178 IVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRD-VETVV 236

Query: 501 KILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIR----TNNFIVRQL 555
            +L EM+  G   +V S +  + V  + G  + A + L+ M   G +    TN  +++ L
Sbjct: 237 WLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQIL 296

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
            ++         AK +      S  K D V Y ++L    +C D  + R ++ I +A K 
Sbjct: 297 CDA----GRVSDAKDVFWKMKASDQKPDRVTYITLLD---KCGDNGDSRSVIEIWNAMKA 349

Query: 616 KAH 618
             +
Sbjct: 350 DGY 352


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 138/289 (47%), Gaps = 6/289 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVH 225
           +   L   N  D +  LF  A  +S   P D+  Y +L   L   +  +    LFDEM  
Sbjct: 90  VLDGLGKANMMDEACKLF--ASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEM-- 145

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
              +       AY  VI    KA ++E +    KK+LD +   D  + N L+T     G 
Sbjct: 146 -EERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGR 204

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
              A EI+E M+K   +++  ++  M+    K+G++  A +   EM+ R  +P+   F +
Sbjct: 205 TELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNT 264

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L++ +G+A     + KV  EM+  G  P    Y  +IE++AKAG +  A  ++ +M  AG
Sbjct: 265 LINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAG 324

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              N   + ++I++  K+G+   A  I+ DM++ G LP   T + L ++
Sbjct: 325 CSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVLQQL 373



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 160/339 (47%), Gaps = 8/339 (2%)

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
           H S  N  +    Y  VIQ L KA  + ++     K++ +  + DT   NV++       
Sbjct: 43  HGSKPNAYT----YKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKAN 98

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           +  +A +++ SM+   C  D  TY ++I SL +  R + A  LF EM+ER   PS   + 
Sbjct: 99  MMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYT 158

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +++D   KAGR++++M V  +M      P      SLI + ++ G+ + A  +++ M+ +
Sbjct: 159 NVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKS 218

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G   N   F  +++   K+GK+ +A     +ME  G  P   T++ L+     +     A
Sbjct: 219 GVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEA 278

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
            K+   M SAGL P + TYT ++   AK   +  A ++  +M+  G S +V   ++L+  
Sbjct: 279 YKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDA 338

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNF---IVRQLFESC 559
            +K G    A      M   GI  +     +++QL   C
Sbjct: 339 LVKAGRYQDARDIYFDMKKKGILPDAITATVLQQLAGKC 377



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 161/334 (48%), Gaps = 1/334 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N VI    ++ ++      F+++     K +  +Y  ++   +  G    A E+ + M K
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIK 77

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D     +++  L K+  +D A KLF  MK          +A L+ S+G+  R + 
Sbjct: 78  TGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEE 137

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  ++ EM+  G  PSAP Y ++I+ Y KAG++++A+ +  +M      P+      +I 
Sbjct: 138 ATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLIT 197

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           + +++G+ ++A  IF  M+++G      +++ +L+    +G+V  A +  + M + G++P
Sbjct: 198 AVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKP 257

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWL 537
              T+  L+  L + K    A K+L EM++ G + DV + + ++  + K G++  A    
Sbjct: 258 NSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMF 317

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
             M  +G   N      L ++ +K   Y+ A+ +
Sbjct: 318 GDMEKAGCSANVVTYNLLIDALVKAGRYQDARDI 351


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 159/316 (50%), Gaps = 7/316 (2%)

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y  + ++LD+    +T+ +NVLM  F+  G    A ++++ M +        T+  +I 
Sbjct: 170 AYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNTLIS 228

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            + ++  LDA   L++EM +   +P    + +L+    + GR++ ++K++ EM+  G  P
Sbjct: 229 GMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNP 288

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +A ++ +LI+++ K G ++  + L+ +MR+ G  P+   +  ++    ++  L  A SI 
Sbjct: 289 NAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIV 348

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            +M+ AG  P   TY+ L++     G++D AM +   M    +     TYTAL++ L+K 
Sbjct: 349 EEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKA 408

Query: 494 KLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSS----GIRTN 548
                A ++L EM       D  + + V+  + + G V    + L+ M +     G+ T 
Sbjct: 409 GRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTY 468

Query: 549 NFIVRQLFE-SCMKNA 563
           N I+  L +   MKNA
Sbjct: 469 NVIMNGLCKLGQMKNA 484



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 152/337 (45%), Gaps = 16/337 (4%)

Query: 203 LFDVLNESRDFDGMLSL------FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
           LF+VL   RDF  +  L      FDEM        ++    +N +I  + +A  L+    
Sbjct: 188 LFNVL--MRDFVRLGELVSARKVFDEMRRSVQPTVVT----FNTLISGMCRARDLDAVDG 241

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            +K++ D   K D  +Y  L+  F   G    A +++  M     + +   +  +I +  
Sbjct: 242 LYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHC 301

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           K G ++A + L+Q+M+ R   P    + +LV+ + +A  L  +  +  EM+  G +P   
Sbjct: 302 KEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKV 361

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +LI+   K GKLD A+ +  +M       +   +T +I   +K+G+   A  +  +M
Sbjct: 362 TYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREM 421

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
             A   P  +TY+ +++     G V +  KL   M + G +PG+ TY  ++  L K   +
Sbjct: 422 MEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQM 481

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHA 533
             A  +L  M  +G S D    ++L+    DG   H 
Sbjct: 482 KNADMLLHAMLNIGVSPDDITYNILL----DGQCKHG 514



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 5/227 (2%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
           D  +YN L+   L +    KA E I E M+      D  TY  +I    K G+LD A+ +
Sbjct: 324 DLVAYNALVN-GLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDI 382

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
            Q+M E+        + +L+  + KAGR   + +V  EM      P    Y  +I+++ +
Sbjct: 383 KQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCR 442

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            G + T  +L  EM+  G +P    + +I+    K G++  A  +   M   G  P   T
Sbjct: 443 KGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDIT 502

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           Y+ LL+     G+V ++ +L    +S G+ P  + YT+L++ LAK+K
Sbjct: 503 YNILLDGQCKHGKVANSEELE---SSKGMVPDFAVYTSLISELAKKK 546


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 148/322 (45%), Gaps = 5/322 (1%)

Query: 167 ITQALKVI-NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           + Q LK   ND   +   F WAK+Q+ YV   E Y ++ D+L ++++FD M  L  EM  
Sbjct: 180 VMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEM-- 237

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
                G       ++V++  AKA + E +   F+ +     + DT + N L+   +    
Sbjct: 238 -KRIEGYVCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKLLDALVKGQS 296

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
              A  + +   K    L   ++ ++I    K    + A K+ +E KE  F P    + +
Sbjct: 297 IEIAHNVLDEF-KSSVPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNN 355

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
            ++S           +V  EM+G G  P+A  Y  L+  Y KAG+L  AL  ++ M+  G
Sbjct: 356 FIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDG 415

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             P+   ++ ++    K+G+L  A  +F DM + G +    TY+ ++    +  + ++A+
Sbjct: 416 IVPDTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETAL 475

Query: 466 KLYNSMTSAGLRPGLSTYTALL 487
           +L   M     +P L TY  LL
Sbjct: 476 RLLKEMEETSCKPDLQTYHPLL 497


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 4/336 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEENLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A  LF EM ++   P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           + TYT ++    K+  V   +K+L EM+  GY   V
Sbjct: 381 IGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSV 416



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D  + + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 145/319 (45%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  KE  FR  F+    +++ + K     
Sbjct: 59  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E   CG+  S   +  L+ S+ K G++  A  ++D +   G RP+   F  ++
Sbjct: 119 LVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K G L+    +   M+ +G  P   TYS L+       ++D A  L++ M   GL 
Sbjct: 179 NGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ + F    L +   K    E+A    +  ++   ++D V YT++++ L  
Sbjct: 299 IDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL-- 356

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 357 CQEGRSVDAEKMLREMLSV 375



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD     +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G+ P+  T
Sbjct: 388 INEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 7/291 (2%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L+L D MV +  +        Y  +I  L K    E +     K+ ++  K     YN +
Sbjct: 30  LALVDRMVEEGHQ-------PYGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAI 82

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +      G    A  ++  M       D  TY  MI S  +SGR   A +L ++M ER  
Sbjct: 83  IDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQI 142

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    F++L++++ K G++  + ++Y +M   G  P+   Y S+I+ + K  +L+ A R
Sbjct: 143 NPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKR 202

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           + D M      P+   F+ +I  + K+ ++D  M IF +M R G +    TY+ L+    
Sbjct: 203 MLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFC 262

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
             G +D+A  L N M S+G+ P   T+ ++L  L  +K +  A  IL +++
Sbjct: 263 QVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQ 313



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 131/295 (44%), Gaps = 5/295 (1%)

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           C  D  T+  ++  L   GR+  A+ L   M E   +P    + ++++ + K G  ++++
Sbjct: 6   CRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESAL 61

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            +  +M+    +    +Y ++I+   K G    A  L+ EM   G  P+   ++ +I+S 
Sbjct: 62  NLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSF 121

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            +SG+   A  +  DM      P   T+S L+      G+V  A ++Y  M   G+ P  
Sbjct: 122 CRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTT 181

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRF 539
            TY +++    K+  ++ A ++L  M +   S D V+ S ++  Y K   VD+ +     
Sbjct: 182 ITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCE 241

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           M   GI  N      L     +    ++A+ LL   + S    + + + S+LA L
Sbjct: 242 MHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASL 296


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 159/355 (44%), Gaps = 21/355 (5%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS-----TYELMIPSLAKSGRLDAAIKL 327
           YN+++      G   +A EI+    +GE + DG      TY  +I  L KS  L A ++L
Sbjct: 4   YNIVLQSLCRAGDTARALEIF----RGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMEL 59

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F+E+ ER   P    + +L+DS+ KAG L+ + +++ +M   G  P+   Y  LI    K
Sbjct: 60  FEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCK 119

Query: 388 AGKLDTALRLWDEM--RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL--- 442
            G++D A  L  EM  +     PN   +   ++   K      A  +   + R G L   
Sbjct: 120 VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSL-RDGSLRVS 178

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   T+S L++     GQ+D A  +++ M + G  P + TY AL+  L K   ++ A  +
Sbjct: 179 PDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAM 238

Query: 503 LLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ-----LF 556
           +  M   G + DV    VL+  + K   VD AL  L  M S G   N  +  +     L 
Sbjct: 239 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILI 298

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
               K   +E A  L E  V    + D++ + +++  L +    +  R ++ ++ 
Sbjct: 299 AGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMG 353



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 178/388 (45%), Gaps = 13/388 (3%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           + Q+L    D+  +L +FR    +    P    Y  + + L +S D    + LF+E+V  
Sbjct: 7   VLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVER 66

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
                +     YN +I  L KA  LE +      +    C  +  +Y+VL+      G  
Sbjct: 67  GHHPDV---VTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 287 YKAFEIYESMEKGECSL--DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR--PSFNI 342
            +A E+ + M +  C +  +  TY   +  L K      A +L + +++ + R  P    
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 183

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           F++L+D + K G++D +  V+ +M   G+ P+   Y +L+    KA K++ A  + + M 
Sbjct: 184 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV 243

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG-----FLPTPSTYSCLLEMHAS 457
             G  P+   +++++++  K+ ++D A+ +   M   G      +P   T++ L+     
Sbjct: 244 DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACK 303

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           +G  + A  L+  M +  L+P + T+ AL+  L K   V+ A  IL  M  +G   +V  
Sbjct: 304 AGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVT 363

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSG 544
            + L+    K G ++ A ++L  M SSG
Sbjct: 364 YNALVHGLCKSGRIEEACQFLEEMVSSG 391



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 174/396 (43%), Gaps = 11/396 (2%)

Query: 228 SKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
           +++G++     YN +I  L K++ L      F+++++     D  +YN L+      G  
Sbjct: 29  ARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDL 88

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM--KERNFRPSFNIFA 344
            +A  ++  M    C  +  TY ++I  L K GR+D A +L QEM  K  +  P+   + 
Sbjct: 89  EEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYN 148

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHR--PSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           S +D + K      + ++   ++    R  P    + +LI+   K G++D A  ++D+M 
Sbjct: 149 SFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMI 208

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             G+ PN   +  ++    K+ K++ A ++   M   G  P   TYS L++    + +VD
Sbjct: 209 AGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVD 268

Query: 463 SAMKLYNSMTSAGLRPGL-----STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            A++L + M S G  P +      T+  L+    K    + A+ +  EM       DV  
Sbjct: 269 EALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMT 328

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
              L+  + K G V+ A   L  MG+ G+  N      L     K+   E A   LE  V
Sbjct: 329 FGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMV 388

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
            S    D + Y S++  L R     +   L++ L +
Sbjct: 389 SSGCVPDSITYGSLVYALCRASRTDDALQLVSELKS 424



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 152/319 (47%), Gaps = 9/319 (2%)

Query: 180 SLSLFRWAKRQSWYV-PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY 238
           +  L R  +  S  V P    +  L D L +    D   S+FD+M+   +   +     Y
Sbjct: 163 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMI---AGGYVPNVITY 219

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++  L KADK+E ++   + ++D     D  +Y+VL+  F       +A E+   M  
Sbjct: 220 NALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMAS 279

Query: 299 GECSL-----DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
             C+      D  T+ ++I    K+G  + A  LF+EM  +N +P    F +L+D + KA
Sbjct: 280 RGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKA 339

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G+++ +  +   M   G  P+   Y +L+    K+G+++ A +  +EM  +G  P+   +
Sbjct: 340 GQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITY 399

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             ++ +  ++ + D A+ + ++++  G+ P   TY+ L++    SG+ + A+ +   M  
Sbjct: 400 GSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVG 459

Query: 474 AGLRPGLSTYTALLTLLAK 492
            G +P   T+ A  + L +
Sbjct: 460 KGHQPDSFTFAACFSGLHR 478



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 116/248 (46%), Gaps = 11/248 (4%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    + +L     ++ +F+   +LF+EMV  + +  +  F A   +I  L KA ++E 
Sbjct: 288 VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGA---LIDGLCKAGQVEA 344

Query: 254 SYCCFKKVLDSDCKI----DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           +    + +LD    +    +  +YN L+      G   +A +  E M    C  D  TY 
Sbjct: 345 A----RDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYG 400

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++ +L ++ R D A++L  E+K   + P    +  LVD + K+G+ + ++ V  EM G 
Sbjct: 401 SLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGK 460

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           GH+P +  + +      ++G L   + L   +   G  P+    + I++   +SGKLD  
Sbjct: 461 GHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDV 520

Query: 430 MSIFTDME 437
            ++  + E
Sbjct: 521 KAMIKEFE 528


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 136/581 (23%), Positives = 248/581 (42%), Gaps = 59/581 (10%)

Query: 116 FDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHIT--QALKV 173
           F + +M   +   F  A  V +  E+++  K   E   ++D L      +H T  Q L  
Sbjct: 108 FPNEIMYTTVINGFCKAGQVDQAFELLDEMK---ERGVKMDVL------LHSTLIQGLCR 158

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDEC------YVMLFDVLNESRDFDGMLSLFDEMV--H 225
               D +L  F+          G+EC      Y  + + L ++   D  L LFD+M   +
Sbjct: 159 KGRIDEALEQFKSM--------GEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRY 210

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
           ++S        +Y+ VI  L KA +++ +Y  FK++    C  +  +Y+ L+        
Sbjct: 211 EASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDR 270

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           P +  E+   M++    ++   +  M+ +L K+   + A + F+ + +   +P+   +  
Sbjct: 271 PSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNV 330

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
            V  + KAGR+D + ++ +EM      P    Y S+I+ + KAG++D A  ++  M +  
Sbjct: 331 AVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHE 390

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             P+   F  ++   ++  K   A  +  DM  AGF+P   TY+ L++    +  V+SA+
Sbjct: 391 CIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESAL 450

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VY 524
           ++Y+ M     +P  +TY  L+  L + + VD A + L  M+      + +    L+ V 
Sbjct: 451 EIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVL 510

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET--YVESAAKV 582
            K G VD A   L  +   G +      + L E       +E+A  LL +  +V  AA  
Sbjct: 511 CKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAAT- 569

Query: 583 DLVLYTSVLAHLVRC--QDEQNERHLMAILSATKHKAHAF------LCGLFTGPEQRKQP 634
               Y+  +A + +    DE  E     +L   +     +      LCGL          
Sbjct: 570 ----YSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGL--------DR 617

Query: 635 VLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRA 675
           V S + EF        E+ A+R     L+ Y +L+G+   A
Sbjct: 618 VESAIAEF--------EKMASRGCAPGLVTYTLLIGEACSA 650



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/490 (21%), Positives = 196/490 (40%), Gaps = 82/490 (16%)

Query: 169 QALKVINDSDTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
           + L+ + D D + + F+WA  +  +      C V+L   +   R  +    L +E+    
Sbjct: 48  RVLQQVEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLC 107

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
             N I     Y  VI    KA +++ ++    ++ +   K+D   ++ L+     KG   
Sbjct: 108 FPNEI----MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRID 163

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER-----NFRPSFNI 342
           +A E ++SM + ECS +  TY  ++  L K+ R+D A++LF +M++R        P    
Sbjct: 164 EALEQFKSMGE-ECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVIS 222

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           +++++D++ KA R+D + + +  M+  G  P+   Y SLI+   K  +    L L   M+
Sbjct: 223 YSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMK 282

Query: 403 IAGF-----------------------------------RPNFGLFTMIIESHAKSGKLD 427
             GF                                   +PN   + + +    K+G++D
Sbjct: 283 EKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVD 342

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD------------------------- 462
            A  I  +M  +   P   TYS +++    +G++D                         
Sbjct: 343 EAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLL 402

Query: 463 ----------SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
                      A +++  M +AG  PGL TY  L+  +     V+ A +I  +MK     
Sbjct: 403 HGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQ 462

Query: 513 VDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D +  + ++    +   VD A  +L  M +  +  N  I   L E   K    + A  +
Sbjct: 463 PDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSV 522

Query: 572 LETYVESAAK 581
           L+  VE   +
Sbjct: 523 LDNVVEVGCQ 532



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 3/270 (1%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           Q+YNVLM           A EIY  M++ +   D +TY  +I  L ++ R+D A +    
Sbjct: 431 QTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDV 490

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M+  N  P+  I  +LV+ + K G +D +  V   +   G +P    +  L+E      K
Sbjct: 491 MEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKK 550

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
            + A +L   +R  GF  +   +++ +    K+GK D A+ +   M   G  P   TY  
Sbjct: 551 WEAASKL---LRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVA 607

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           +L       +V+SA+  +  M S G  PGL TYT L+       + D A +I   M   G
Sbjct: 608 VLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAG 667

Query: 511 YSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
           ++        L   ++D      L   R M
Sbjct: 668 FTPQAQTMRTLSSCLRDAGYQDLLVRQRIM 697



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 146/295 (49%), Gaps = 15/295 (5%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T  +++ +  K+ R + A +L +E  E    P+  ++ ++++   KAG++D + ++  EM
Sbjct: 78  TCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEM 137

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G +    ++ +LI+   + G++D AL  +  M      PN   +  ++    K+ ++
Sbjct: 138 KERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG-EECSPNVITYNTVVNGLCKANRI 196

Query: 427 DIAMSIFTDMERA-----GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           D A+ +F DME+      G  P   +YS +++    + +VD A + +  M + G  P + 
Sbjct: 197 DEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVV 256

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFM 540
           TY++L+  L K        ++LL MK  G+ +++   + ++  + K+   + A ++   +
Sbjct: 257 TYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL 316

Query: 541 GSSGIRTN----NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             SG + N    N  V  L   C    + E+ + LLE  VES    D++ Y+S++
Sbjct: 317 LKSGKKPNVVTYNVAVHGL---CKAGRVDEAYRILLEM-VESKVTPDVITYSSII 367



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 8/204 (3%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP       L +VL +  + D   S+ D +V    +    L   +  +++ L    K E 
Sbjct: 497 VPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQ---PLGETFKILVEELYLRKKWEA 553

Query: 254 SYCCFKKVLDSDCKI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
           +     K+L S   + D  +Y++ +      G P +A E+ E M       D  TY  ++
Sbjct: 554 A----SKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVL 609

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            SL    R+++AI  F++M  R   P    +  L+     A   D + +++  M   G  
Sbjct: 610 RSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFT 669

Query: 373 PSAPMYVSLIESYAKAGKLDTALR 396
           P A    +L      AG  D  +R
Sbjct: 670 PQAQTMRTLSSCLRDAGYQDLLVR 693



 Score = 42.0 bits (97), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 12/181 (6%)

Query: 427 DIAMSIFT-DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           D+A + F     + GF     T + LL     + + + A +L          P    YT 
Sbjct: 57  DVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTT 116

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMG--- 541
           ++    K   VD A ++L EMK  G  +DV   S ++    + G +D AL   + MG   
Sbjct: 117 VINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEEC 176

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPL--LETYVESA--AKVDLVLYTSVLAHLVRC 597
           S  + T N +V  L   C  N + E+ +    +E   E++   + D++ Y++V+  L + 
Sbjct: 177 SPNVITYNTVVNGL---CKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKA 233

Query: 598 Q 598
           Q
Sbjct: 234 Q 234


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 197/451 (43%), Gaps = 46/451 (10%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKL 251
           +VPG  C+  L   +  S  F+     F+E     SK  + L   ++  VI+   +A ++
Sbjct: 125 FVPGSNCFNNLLTFVVGSSSFNQWWCFFNE-----SKIKVVLDVYSFGIVIKGCCEAGEI 179

Query: 252 EMSY---------------CCFKKVLDSDCK--------------------IDTQSYNVL 276
           E S+                 +  ++D  CK                     +  +Y VL
Sbjct: 180 EKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVL 239

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +      G+  + FE+YE M++     +  TY  ++  L K GR   A K+F EM+ER  
Sbjct: 240 IHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGV 299

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
             +   + +L+  + +  + + + +V  +M+  G  P+   Y +LI+ +    KL  AL 
Sbjct: 300 SCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALS 359

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +++  G  P+   + +++    K G    A  +  +ME  G  P+  TY+ L++  A
Sbjct: 360 LCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFA 419

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DV 515
            S  ++ A++L +SM   GL P + TY+ L+     +  ++ A+++   M    +   +V
Sbjct: 420 RSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEV 479

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
             + +++ Y K+GS   ALR  R M    +  N    R + E   K    + A+ L+E  
Sbjct: 480 IYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKM 539

Query: 576 VESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
           ++S          S+L  + R +++ + R +
Sbjct: 540 IDSGIGPS----DSILNLISRAKNDSHSRSM 566



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 118/250 (47%), Gaps = 18/250 (7%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL--------DTS 359
           YE++I +  +S  LD++I  F EM ++ F P  N F +L+  +  +           ++ 
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK 156

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           +KV +++   G          +I+   +AG+++ +  L  E+R  GF PN  ++T +I+ 
Sbjct: 157 IKVVLDVYSFG---------IVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDG 207

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G+++ A  +F +M + G +    TY+ L+     +G      ++Y  M   G+ P 
Sbjct: 208 CCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPN 267

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
           L TY  ++  L K      A K+  EM+  G S ++   + L+  + ++   + A   + 
Sbjct: 268 LHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMD 327

Query: 539 FMGSSGIRTN 548
            M S GI  N
Sbjct: 328 QMKSDGINPN 337



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/255 (17%), Positives = 97/255 (38%), Gaps = 35/255 (13%)

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT----------------- 414
           +  + +Y  +I +Y ++  LD+++  ++EM   GF P    F                  
Sbjct: 91  KTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWC 150

Query: 415 -----------------MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
                            ++I+   ++G+++ +  +  ++   GF P    Y+ L++    
Sbjct: 151 FFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCK 210

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G+++ A  L+  M   GL     TYT L+  L K  +     ++  +M+  G   ++  
Sbjct: 211 KGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHT 270

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            + +M  + KDG    A +    M   G+  N      L     +      A  +++   
Sbjct: 271 YNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMK 330

Query: 577 ESAAKVDLVLYTSVL 591
                 +L+ Y +++
Sbjct: 331 SDGINPNLITYNTLI 345


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 176/377 (46%), Gaps = 6/377 (1%)

Query: 172 KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           K+ N    +LS FRWA++Q  +    E Y  L + L + + F  + +L    V+D    G
Sbjct: 120 KLSNSGVIALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNL----VNDMRSKG 175

Query: 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291
           +     +  + +  A+A K++ +   F+K+     +     +N L+          +A E
Sbjct: 176 LLTQETFALISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQE 235

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +++ M+  +   D  +Y +++    +   L    ++++EMK+  F P    +  L+++  
Sbjct: 236 VFDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHC 295

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           KA R D +++++ +M+     P+  +Y +LI       +L  AL+ ++  + +GF P   
Sbjct: 296 KARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAP 355

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +  ++ S+ +S ++D A  I  +M + G  P   TY  +L     + +   A +++  M
Sbjct: 356 TYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGM 415

Query: 472 TSA-GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGS 529
           +S  G  P +STY  ++ +    + VD+A ++  EMK  G    +   S ++     +  
Sbjct: 416 SSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENK 475

Query: 530 VDHALRWLRFMGSSGIR 546
           +D A ++   M   GIR
Sbjct: 476 LDEACKYFHEMLDMGIR 492



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 139/293 (47%), Gaps = 7/293 (2%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K  T++YN L+   L K   +K      +  + +  L   T+ L+    A++ ++  A++
Sbjct: 142 KYSTENYNALIEA-LGKIKQFKMIWNLVNDMRSKGLLTQETFALISRRYARARKVKEAVE 200

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
            F++M++   +P  + F  L+D++ K+  ++ + +V+ +M+    RP    Y  L+E + 
Sbjct: 201 TFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWG 260

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           +   L     ++ EM+  GF P+   + ++I +H K+ + D A+ +F  ME    +PTP 
Sbjct: 261 QEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPH 320

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            Y  L+    S  ++  A++ +    ++G  P   TY A++    +   +D A +I+ EM
Sbjct: 321 IYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEM 380

Query: 507 KTMGYSVDVSASDVLMVY-IKDGSVDHALRWLRFMGSS-----GIRTNNFIVR 553
           +  G        D+++ + IK      A R  + M S       + T   +VR
Sbjct: 381 RKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVR 433



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 102/211 (48%), Gaps = 8/211 (3%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLE 252
           +P    Y  L + L   R     L  F+     S  +G +  +  YN V+    ++ +++
Sbjct: 316 MPTPHIYCTLINGLGSERRLTEALQFFER----SKASGFTPEAPTYNAVVGSYCQSMRMD 371

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM--EKGECSLDGSTYEL 310
            +Y    ++        T++Y++++   +      +A+ +++ M  E G C    STYE+
Sbjct: 372 DAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPG-CEPSVSTYEI 430

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++       R+D A++++ EMK +   P  ++F++L++S+    +LD + K + EM   G
Sbjct: 431 VVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMG 490

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            RP A M+ +L ++    GK D  L L  ++
Sbjct: 491 IRPPAAMFSNLKQTLLDEGKQDMVLILAQKL 521



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 110/247 (44%), Gaps = 4/247 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           + P    Y +L +   ++R +D  + LF +M    +   +     Y  +I  L    +L 
Sbjct: 280 FEPDAVTYGILINAHCKARRYDAAVELFHKM---EANKCMPTPHIYCTLINGLGSERRLT 336

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F++   S    +  +YN ++  +        A+ I + M K        TY++++
Sbjct: 337 EALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIIL 396

Query: 313 PSLAKSGRLDAAIKLFQEMK-ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
             L K+ R   A ++FQ M  E    PS + +  +V       R+D +++V+ EM+  G 
Sbjct: 397 HHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGV 456

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P   M+ +LI S     KLD A + + EM   G RP   +F+ + ++    GK D+ + 
Sbjct: 457 LPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQDMVLI 516

Query: 432 IFTDMER 438
           +   +++
Sbjct: 517 LAQKLDK 523


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 197/434 (45%), Gaps = 11/434 (2%)

Query: 196 GDECYVMLFDVLNESRDFDGML--SLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLE 252
           G E  ++ F+ L  +R   G +  +L  E++++  ++GI      YN +I   ++   LE
Sbjct: 284 GCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLE 343

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   +  ++   C+ D  +YN +++++   G+  +A  +++ +E      D  TY  ++
Sbjct: 344 EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLL 403

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            + A+ G +D   ++ ++M +  F      + +++   GK G+ D + ++Y +M+  G  
Sbjct: 404 YAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRS 463

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P A  Y  LI+S  KA  +  A  +  EM  A  +P    F+ +I  +AK+GK   A   
Sbjct: 464 PDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEET 523

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  M R+G  P    YS +L++     +   AMKLY  M     +P  + Y  +L +L K
Sbjct: 524 FDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 583

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
               +   K++ +M+ +     +++  +  + +K    DHA   LR   S G   +   +
Sbjct: 584 ENREEDVHKVVKDMEEL---CGMNSQVICSILVKGECFDHAANMLRLAISQGCELDRENL 640

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
             +  S   +  +  A+ LL+   E ++    ++  +++  L +     +     A+   
Sbjct: 641 LSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGD-----ALREY 695

Query: 613 TKHKAHAFLCGLFT 626
            K +     CG FT
Sbjct: 696 GKARDFGLFCGSFT 709



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 176/426 (41%), Gaps = 42/426 (9%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L ++ W   + WY P       +  VL ++                   N  +L     
Sbjct: 203 ALEVYEWLNLRHWYSPNARMLATILSVLGKA-------------------NQEAL----- 238

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
             ++  A+A+    +                Q YN +M ++   G   K  E+ + M   
Sbjct: 239 -AVEIFARAEAAXGN--------------TVQVYNAMMGVYARTGRFTKVQELLDLMRSR 283

Query: 300 ECSLDGSTYELMIPSLAKSGRL--DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            C  D  ++  +I +  KSG +  + AI+L  E++    +P    + +L+ +  +   L+
Sbjct: 284 GCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLE 343

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++KVY +M     +P    Y ++I  Y + G    A RL+ ++   GF P+   +  ++
Sbjct: 344 EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLL 403

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            + A+ G +D    I  DM + GF     TY+ ++ M+   GQ D A +LY+ M  +G  
Sbjct: 404 YAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRS 463

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P   TYT L+  L K  ++  AA+++ EM        +     L+  Y K G    A   
Sbjct: 464 PDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEET 523

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              M  SGI+ ++     + +  ++      A  L +  V  + K D  LY  +L  L +
Sbjct: 524 FDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 583

Query: 597 CQDEQN 602
              E++
Sbjct: 584 ENREED 589



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 115/575 (20%), Positives = 229/575 (39%), Gaps = 67/575 (11%)

Query: 268  IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            +D + +N L+  +   G   +A  I+ +M +   S    +   ++ +L   GRLD    +
Sbjct: 812  VDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVV 871

Query: 328  FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             QE+++  F+ S +    ++D+   AG +    K+Y  M+  G+ P+  +Y  +I   AK
Sbjct: 872  IQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAK 931

Query: 388  AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
              ++     +  EM +A F+P+  ++  +++ +   G       ++  ++ AG  P   T
Sbjct: 932  GKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDT 991

Query: 448  YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
            Y+ L+ M+    + +  + L + M   GL P L TY +L++   K ++V+ A ++   + 
Sbjct: 992  YNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLL 1051

Query: 508  TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
            +    +D S   ++M ++   G+   A + L  M  +G+      +  L  S   +   E
Sbjct: 1052 SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPE 1111

Query: 567  SAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDE-------------------------- 600
             A+ +L+        +  + Y+SV+   ++  D                           
Sbjct: 1112 EAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFV 1171

Query: 601  ------QNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGA 654
                  Q+    + +L A +         L T   ++   ++S V      +   LE+ A
Sbjct: 1172 RAASLSQHTSEAIVLLKALRDTGFDLPIRLLT---EKSDSLVSEVDNCLEKLG-PLEDNA 1227

Query: 655  ARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALI 714
            A  FVN L + L        A  V+++A +  ++   +       W  D R +S G+AL+
Sbjct: 1228 AFNFVNALEDLLWAFELRATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALV 1287

Query: 715  AVMHTLHRFRKRMLY---------------------YGVVPRRIKLVTGP------TLKI 747
             +   L   +   L                      Y + P+ + L+TG       +L  
Sbjct: 1288 GLTLWLDHMQASFLITIFVQLMEEYFYFWQDASLQGYPLSPKSVVLITGTAEYNMVSLNS 1347

Query: 748  VIAQMLSSVESPFEVSKV---VLRAPGDSVMEWFK 779
             +   L  + SPF   K    +L A   S+  W K
Sbjct: 1348 TLKAFLWEMGSPFLPCKTRSGLLVAKAHSLRMWLK 1382



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 145/309 (46%), Gaps = 10/309 (3%)

Query: 324 AIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
           A+++++ +  R+ + P+  + A+++  +GKA +   +++++   +      +  +Y +++
Sbjct: 203 ALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAAXGN-TVQVYNAMM 261

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL--DIAMSIFTDMERAG 440
             YA+ G+      L D MR  G  P+   F  +I +  KSG +  ++A+ +  ++ R+G
Sbjct: 262 GVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSG 321

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY+ L+   +    ++ A+K+YN M +   +P L TY A++++  +  +   A 
Sbjct: 322 IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAG 381

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++  ++++ G+  D V+ + +L  + ++G+VD        M   G   +      +    
Sbjct: 382 RLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMY 441

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-----AHLVRCQDEQNERHLMAILSATK 614
            K   ++ A  L      S    D V YT ++     A++++   E     L A +  T 
Sbjct: 442 GKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTL 501

Query: 615 HKAHAFLCG 623
               A +CG
Sbjct: 502 RTFSALICG 510



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 107/223 (47%)

Query: 288  KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
            KA  +  S+ +    +D   +  +I + A SG  + A  +F  M      P+ +    L+
Sbjct: 797  KAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLM 856

Query: 348  DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
             ++   GRLD    V  E+Q  G + S      +++++A AG +    +++  M+ AG+ 
Sbjct: 857  QALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYF 916

Query: 408  PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
            P   L+ ++I   AK  ++    ++ ++ME A F P  S ++ +L+++   G      ++
Sbjct: 917  PTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQV 976

Query: 468  YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            Y  +  AGL+P   TY  L+ +  + +  +    ++ EM+ +G
Sbjct: 977  YQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVG 1019



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 82/422 (19%), Positives = 185/422 (43%), Gaps = 15/422 (3%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN-ESRDFDGMLSLFDEMVHDSSKNGIS 233
           N+S  ++ L++     S + P    Y ++  VL  E+R+ D         VH   K+   
Sbjct: 550 NESGKAMKLYQEMVLHS-FKPDHALYEVMLRVLGKENREED---------VHKVVKDMEE 599

Query: 234 LFSAYNRVI-QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           L    ++VI   L K +  + +    +  +   C++D ++   ++  + + G   +A E+
Sbjct: 600 LCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDRENLLSILGSYGSSGRHLEAREL 659

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMG 351
            + + +          E +I  L K+ +L  A++ + + ++   F  SF ++ SL+    
Sbjct: 660 LDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCE 719

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR-PNF 410
           +      + +++ +M+  G  PS  +Y S++ +Y K G  +TA  L D+    G    + 
Sbjct: 720 ENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDV 779

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
            + T +IE++ K      A S+   + +   +     ++ L+  +A+SG  + A  ++N+
Sbjct: 780 SIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNT 839

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS 529
           M   G  P + +   L+  L     +D    ++ E++ MG+ +  S+  +++  +   G+
Sbjct: 840 MMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGN 899

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +    +  + M ++G      + R +     K       + ++     +  K DL ++ S
Sbjct: 900 IFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNS 959

Query: 590 VL 591
           VL
Sbjct: 960 VL 961



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/317 (19%), Positives = 132/317 (41%), Gaps = 2/317 (0%)

Query: 273  YNVLMTLFLNKGLPYKA-FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
            Y  ++  +   G P  A + I ++ EKG    D S +  +I +  K      A  L   +
Sbjct: 746  YRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSL 805

Query: 332  KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            +++       ++ +L+ +   +G  + +  ++  M   G  P+      L+++    G+L
Sbjct: 806  RQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRL 865

Query: 392  DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
            D    +  E++  GF+ +    T+++++ A +G +     I+  M+ AG+ PT   Y  +
Sbjct: 866  DELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIM 925

Query: 452  LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
            + + A   +V     + + M  A  +P LS + ++L L           ++   ++  G 
Sbjct: 926  IGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGL 985

Query: 512  SVDVSASDVL-MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
              D    + L ++Y +D   +  L  +  M   G+       + L  +  K  + E A+ 
Sbjct: 986  KPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEE 1045

Query: 571  LLETYVESAAKVDLVLY 587
            L E  +    K+D   Y
Sbjct: 1046 LFEGLLSKECKLDRSFY 1062



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/288 (16%), Positives = 127/288 (44%), Gaps = 3/288 (1%)

Query: 189  RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
            + + Y P    Y ++  +L + +    + ++  EM     K  +S+   +N V++     
Sbjct: 911  KAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSI---WNSVLKLYTGI 967

Query: 249  DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
               + +   ++ + ++  K D  +YN L+ ++     P +   +   M +        TY
Sbjct: 968  GDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTY 1027

Query: 309  ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            + +I +  K   ++ A +LF+ +  +  +   + +  ++     +G    + K+   M+ 
Sbjct: 1028 KSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKE 1087

Query: 369  CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
             G  P+      L+ SY+ +G+ + A ++ D +++ G   +   ++ +I+++ K+G  ++
Sbjct: 1088 AGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNV 1147

Query: 429  AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
            A+    +M++ G  P    ++C +   + S     A+ L  ++   G 
Sbjct: 1148 AIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGF 1195


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 169/406 (41%), Gaps = 11/406 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L   L E+R     L L   MVHD    G SL    Y  +I+ L K  ++  +    
Sbjct: 252 YTILIQGLCEARCVREALVLVFMMVHD----GCSLNLHTYTLLIKGLCKEGRIHDARGLL 307

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++          +YN ++  +   G    A  I   ME+  C+ D  TY  +I  L   
Sbjct: 308 DEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC-G 366

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G+LD A +L      R F P+   F +L++   KA R+D +++V   M     +     Y
Sbjct: 367 GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAY 426

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI    K  +L  A    +EM   G  PN   +T II+ + K G +  A+ +F  ME 
Sbjct: 427 GVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEH 486

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P   TY  L+       ++  AM L   M   G+ PG+ TYT L+    K+   D 
Sbjct: 487 EGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDN 546

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A ++   M+  G + D  A +VL     K G  + A     F+   G+         L +
Sbjct: 547 AFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEA---YSFLVRKGVVLTKVTYTSLVD 603

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
              K    + A  L+E  V    K DL  Y+ +L  L + Q + NE
Sbjct: 604 GFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCK-QKKLNE 648



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 170/415 (40%), Gaps = 24/415 (5%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L +F+  + +  + P    Y  L   L + +     ++L  +M  D    G+     Y 
Sbjct: 477 ALEVFKLMEHEGCH-PNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVI---TYT 532

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +IQ   K  + + ++  F+ +  +    D Q+YNVL       G   +A E Y  + + 
Sbjct: 533 TLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSG---RAEEAYSFLVRK 589

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
              L   TY  ++   +K+G  D A  L ++M     +     ++ L+ ++ K  +L+ +
Sbjct: 590 GVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEA 649

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           + +  +M   G + +   Y  +I    K GK D A  L++EM  +G +P+   +T+ I S
Sbjct: 650 LSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISS 709

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G+++ A  +  +MER G  P   TY+  +      G +D A      M  A   P 
Sbjct: 710 YCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPN 769

Query: 480 LSTYTALLTLLAKRKLV----------------DVAAKILLEMKTMGYS-VDVSASDVLM 522
             TY  LL    K  L+                ++  ++L  M   G +   V+ S ++ 
Sbjct: 770 CWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIA 829

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
            + K   ++ A   L  M    I  N  I   L + C    L+  A   +   +E
Sbjct: 830 GFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIE 884



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 141/354 (39%), Gaps = 21/354 (5%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L   L + +  +  LS+ D+M     K  I    AY  +I  + K  K + +   F 
Sbjct: 633 YSVLLQALCKQKKLNEALSILDQMTVSGVKCNIV---AYTIIISEMIKEGKHDHAKSLFN 689

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++ S  K    +Y V ++ +   G   +A  +   ME+   + D  TY + I      G
Sbjct: 690 EMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMG 749

Query: 320 RLDAAIKLFQEMKERNFRPSFNIF--------------ASLVDSMGKAGRLDTSM--KVY 363
            +D A    + M + +  P+   +              A  VD+ G    ++ +M  ++ 
Sbjct: 750 YIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLL 809

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
             M   G  P+   Y S+I  + KA +L+ A  L D M      PN  ++TM+I+     
Sbjct: 810 ERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDI 869

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
                A+S  TDM   GF P   +Y  L+      G  D A  L+  +           +
Sbjct: 870 KLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAW 929

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD--GSVDHALR 535
             L   L K   VD  +++L  M      +D  +  +L   I++  GSV   LR
Sbjct: 930 KILNDGLLKAGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSIREASGSVVSELR 983



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 164/391 (41%), Gaps = 7/391 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN  ++ L + D  E     +  ++      DT +YN ++  +  KG    A   +  +
Sbjct: 146 CYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLL 205

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +    +D  T   ++    ++  L  A  L   M     R +   +  L+  + +A  +
Sbjct: 206 RESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCV 265

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ +   M   G   +   Y  LI+   K G++  A  L DEM + G  P+   +  +
Sbjct: 266 REALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAM 325

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ + KSG++  A+ I   ME+ G  P   TY+ L+      G++D A +L N   + G 
Sbjct: 326 IDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLI-YGLCGGKLDEAEELLNGAIARGF 384

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P + T+T L+    K + +D A ++   M +    +D+ A  VL+ V IK   +  A  
Sbjct: 385 TPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKE 444

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L  M ++G+  N      + +   K  +  +A  + +         +   Y S++  L+
Sbjct: 445 TLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLI 504

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFT 626
             QD++  + +  I   TK +      G+ T
Sbjct: 505 --QDKKLHKAMALI---TKMQEDGITPGVIT 530



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/294 (20%), Positives = 115/294 (39%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           L    Y L + SL +    +   KL+  + +    P    + +++ +  K G L  + + 
Sbjct: 142 LSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRY 201

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           +  ++  G +       +L+  Y +   L  A  L   M + G R N   +T++I+   +
Sbjct: 202 FCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCE 261

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           +  +  A+ +   M   G      TY+ L++     G++  A  L + M   G+ P + T
Sbjct: 262 ARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWT 321

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542
           Y A++    K   +  A  I   M+  G + D    + L+  +  G +D A   L    +
Sbjct: 322 YNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEELLNGAIA 381

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            G          L     K    + A  +    + S  K+DL  Y  ++  L++
Sbjct: 382 RGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIK 435


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 153/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + R F  +   ++E++       +  F   N
Sbjct: 73  AIECYRLTREHKLWVPFDTCRKVL-EHLMKLRYFKLVWGFYEEILECGYPASLYFF---N 128

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 129 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 188

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 189 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 248

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L+ A  L DEM + G +P+   +T +I+ 
Sbjct: 249 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDG 308

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ ++      G+   A K+   M S GL+P 
Sbjct: 309 CCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPD 368

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 369 TGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLM 411



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 162/386 (41%), Gaps = 3/386 (0%)

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC--KIDTQSYNVLMTLFLNKGLPYKAF 290
            +FS    +IQ +        +   F  +L++    + D   ++ L+T +L  G    A 
Sbjct: 15  QMFSEAKSLIQXVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAI 74

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           E Y    + +  +   T   ++  L K          ++E+ E  +  S   F  L+   
Sbjct: 75  ECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRF 134

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K G +  +  V+  +   G RPS   Y +L+  Y + G LD   RL   M  +G +P+ 
Sbjct: 135 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 194

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             ++++I    K  K+D A  +F +M   G +P   T++ L++ H  +G+VD AM++Y  
Sbjct: 195 YTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 254

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGS 529
           M S  L P L TY  L+  L K+  ++ A  ++ EM   G   D  + + ++    K+G 
Sbjct: 255 MLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 314

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +D A    + M    IR ++     +     +      A+ +L   +    K D   YT 
Sbjct: 315 LDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTM 374

Query: 590 VLAHLVRCQDEQNERHLMAILSATKH 615
           ++    +  D      L+  +    H
Sbjct: 375 IINEFCKKGDVWKGSKLLKEMQRNGH 400



 Score = 40.4 bits (93), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 6/173 (3%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS- 236
           D ++ +++    QS  +P    Y  L   L +  D +    L DEM    S  G+     
Sbjct: 246 DLAMEIYKQMLSQSL-LPDLITYNTLIYGLCKKGDLNQAHGLIDEM----SMKGLKPDKF 300

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    K   L+ ++   K+++  + ++D  +Y  +++    +G P  A ++   M
Sbjct: 301 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREM 360

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
                  D  TY ++I    K G +    KL +EM+     PS   +  L++ 
Sbjct: 361 LSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 148/283 (52%), Gaps = 1/283 (0%)

Query: 222 EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           E+V +    GI      Y+ ++    KA++L+++   +K++L+  C  +  +YN+L+ ++
Sbjct: 297 ELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVY 356

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
           + +    +A ++ +++EK     +  TY  +I +  KSG+ + A+K++++M     +PS 
Sbjct: 357 VKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSA 416

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             + +L+ + GK G+++ +++++ +M   G   +   Y SLI +  KAG+ + AL L+ +
Sbjct: 417 TTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSK 476

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M     +PN   F  +I + +  G  + A  +F  M+  G  P   TY  L+  +   GQ
Sbjct: 477 MHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQ 536

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              A+K +  M + G  P  + + +L+ +L +  ++   +K L
Sbjct: 537 WRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSGVLLAQSKAL 579



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 132/258 (51%), Gaps = 2/258 (0%)

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
           DC + T  Y+ LM + +       A ++Y+ M +  CS +  TY ++I    K  + + A
Sbjct: 308 DCNVHT--YSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEA 365

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
           +K+   ++++  +     + +++ +  K+G+ + ++KVY +M   G +PSA  Y +LI +
Sbjct: 366 VKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISA 425

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           Y K G+++ AL ++ +M   G   N   ++ +I +  K+G+ ++A+ +F+ M +    P 
Sbjct: 426 YGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPN 485

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             T++ L+   +  G  + A +L+  M + G +P   TY  L+T   +      A K   
Sbjct: 486 VVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFE 545

Query: 505 EMKTMGYSVDVSASDVLM 522
           +M+T G   D +  + LM
Sbjct: 546 QMQTQGCHPDAAVFNSLM 563



 Score = 99.4 bits (246), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 147/332 (44%), Gaps = 42/332 (12%)

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS------LDGSTYELMIPSLAKSGRL 321
           +D+ +   L+     +G   +A EI++ +   E S       D  TY  MI       +L
Sbjct: 233 LDSSAMAALLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMISQCGSHQQL 292

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             A++L  EM+ R    + + +++L++   KA  LD +  VY +M   G  P+   Y  L
Sbjct: 293 RRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNIL 352

Query: 382 IESYAK-----------------------------------AGKLDTALRLWDEMRIAGF 406
           I+ Y K                                   +G+ + AL+++++M  AG 
Sbjct: 353 IDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGV 412

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
           +P+   +T +I ++ K G+++ A+ IF DM R G      TYS L+     +G+ + A++
Sbjct: 413 KPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALE 472

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYI 525
           L++ M     +P + T+ +L+   +     + A+++  +M+T G   D ++   ++  Y 
Sbjct: 473 LFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYE 532

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           + G    AL+    M + G   +  +   L E
Sbjct: 533 RGGQWRRALKAFEQMQTQGCHPDAAVFNSLME 564



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 130/261 (49%), Gaps = 5/261 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L +V  ++ + D    ++ +M+ +  S N ++    YN +I    K  + E +    
Sbjct: 314 YSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVT----YNILIDVYVKRCQWEEAVKVL 369

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             +     + + ++YN +++     G P +A ++YE M         +TY  +I +  K 
Sbjct: 370 DTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKK 429

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G+++ A+++F++M  R    +   ++SL+ +  KAGR + +++++ +M     +P+   +
Sbjct: 430 GQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTF 489

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SLI + +  G  + A  L+++M+  G +P+   +  +I ++ + G+   A+  F  M+ 
Sbjct: 490 NSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQT 549

Query: 439 AGFLPTPSTYSCLLEMHASSG 459
            G  P  + ++ L+E+   SG
Sbjct: 550 QGCHPDAAVFNSLMEVLWQSG 570



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 103/235 (43%), Gaps = 12/235 (5%)

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL--------FTMIIE 418
           QG  +  S+ M  +L++  AK G L  A+ ++D +R     P+  L        +T +I 
Sbjct: 228 QGLYYLDSSAM-AALLKELAKQGYLKRAVEIFDWLR--NLEPSHELSSLCDLYTYTTMIS 284

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
                 +L  A+ +  +M   G      TYS L+ +   + ++D A  +Y  M   G  P
Sbjct: 285 QCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSP 344

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWL 537
            L TY  L+ +  KR   + A K+L  ++      +V + + V+    K G  + AL+  
Sbjct: 345 NLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVY 404

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
             M ++G++ +      L  +  K    E A  +    +    + +++ Y+S+++
Sbjct: 405 EKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLIS 459


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 148/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +     RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M     +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A ++ + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 94/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ K    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 185/425 (43%), Gaps = 7/425 (1%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           INDS ++ +LF+ AK +   + G     +++  +  +    G +   +E+V +  ++GI 
Sbjct: 346 INDSQSADNLFKEAKTKLSSLNG-----IIYSNIIHAHCQSGNMERAEELVCEMEEDGID 400

Query: 234 L-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
                Y+ ++               F+++ +   K    SY  L+ L++  G   KA  I
Sbjct: 401 APIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSI 460

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            + ME      +  TY ++I           A  +F+EM     +P   I+  L+++  K
Sbjct: 461 SKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCK 520

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G +D ++ +  +MQ    +PS   +  +IE YA AG + +AL   D MR +G  P    
Sbjct: 521 MGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMT 580

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  +I    +  K+  A+S+   M  AG  P   TY+ ++  +A+SG +  A + +  + 
Sbjct: 581 YNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 640

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
            +GL+  +  Y  LL    K   +  A  +  EM       +    ++L+  + + G V 
Sbjct: 641 ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVW 700

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   ++ M   G+  N         +C K    + A+ ++E  V+   K ++  YT+++
Sbjct: 701 EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLI 760

Query: 592 AHLVR 596
               R
Sbjct: 761 KGWAR 765



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 164/361 (45%), Gaps = 6/361 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           +RD  G LS  +EM       G+ L    Y+ +I   AK +  + +   FK+       +
Sbjct: 311 ARDMRGALSCVEEM----KSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSL 366

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +   Y+ ++      G   +A E+   ME+         Y  M+         +  + +F
Sbjct: 367 NGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVF 426

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           + +KE  F+PS   +  L++   K G++  ++ +  EM+ CG + +   Y  LI  +   
Sbjct: 427 ERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHL 486

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
                A  +++EM  +G +P+  ++ ++IE+  K G +D A+ I   M++    P+   +
Sbjct: 487 HDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAF 546

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             ++E +A +G + SA+   + M  +G  P + TY AL+  L ++  V  A  +L +M  
Sbjct: 547 RPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSI 606

Query: 509 MGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G + +     ++M  Y   G +  A  +   +  SG++ + +I   L  +C K+   +S
Sbjct: 607 AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQS 666

Query: 568 A 568
           A
Sbjct: 667 A 667



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 162/360 (45%), Gaps = 1/360 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  ++    K  K+  +    K++     K + ++Y++L+  F++      AF I+E M
Sbjct: 440 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 499

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D + Y L+I +  K G +D AI + ++M++   +PS   F  +++    AG +
Sbjct: 500 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDM 559

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            +++     M+  G  P+   Y +LI    +  K+  A+ + D+M IAG  PN   +T+I
Sbjct: 560 KSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTII 619

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  +A SG +  A   FT ++ +G       Y  LL     SG++ SA+ +   M+   +
Sbjct: 620 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 679

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
                 Y  L+   A+R  V  A  ++ +MK  G   ++ + +  +    K G +  A +
Sbjct: 680 PRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEK 739

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            +  M   G++ N      L +   + +L + A    E    +  K D   Y  ++  L+
Sbjct: 740 VIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLL 799



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 145/336 (43%), Gaps = 40/336 (11%)

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSY 255
           ++ Y ML +      DF    ++F+EM+    ++G+    A YN +I+   K   ++ + 
Sbjct: 473 NKTYSMLINGFIHLHDFANAFAIFEEML----RSGLQPDRAIYNLLIEAFCKMGNMDRAI 528

Query: 256 CCFKKV-------------------------------LD----SDCKIDTQSYNVLMTLF 280
           C  +K+                               LD    S C     +YN L+   
Sbjct: 529 CILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGL 588

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
           + K    +A  + + M     + +  TY +++   A SG +  A + F ++KE   +   
Sbjct: 589 VRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 648

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
            I+ +L+ +  K+GR+ +++ V  EM       +  +Y  LI+ +A+ G +  A  L  +
Sbjct: 649 YIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQ 708

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M+  G  PN   +T  I +  K+G +  A  +  +M   G  P   TY+ L++  A    
Sbjct: 709 MKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSL 768

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            D A+K +  M  AGL+P  ++Y  L+T L  R  V
Sbjct: 769 PDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATV 804



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/360 (18%), Positives = 153/360 (42%), Gaps = 7/360 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           + RV++  ++ D  +     F+++     K   + + +++  +  +G  + A   +E+M 
Sbjct: 237 FRRVVE--SRPDNWQAVVSAFERIP----KPSRREFGLMIVYYAKRGDKHHARATFENMR 290

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +   +  ++ + A +  +  A+   +EMK      +   ++ L+    K     
Sbjct: 291 ARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQ 350

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           ++  ++ E +      +  +Y ++I ++ ++G ++ A  L  EM   G      ++  ++
Sbjct: 351 SADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMM 410

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             +      +  + +F  ++  GF P+  +Y CLL ++   G+V  A+ +   M S G++
Sbjct: 411 HGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIK 470

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
               TY+ L+           A  I  EM   G   D +  ++L+  + K G++D A+  
Sbjct: 471 HNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICI 530

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M    ++ +N   R + E        +SA   L+    S     ++ Y +++  LVR
Sbjct: 531 LEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVR 590


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 123/531 (23%), Positives = 229/531 (43%), Gaps = 24/531 (4%)

Query: 163 KMVHITQALKVINDSDTSLSLFRW-AKRQSWYVPGDECYVMLFDVLNE-SRDFDGMLSLF 220
           ++ +IT   K  ++ ++   +  W A +   Y      Y  + D L +  R F+  L +F
Sbjct: 379 RVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA-LEMF 437

Query: 221 DEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           DEM     K  +    +YN +I    KAD+   +   FK +     K +  ++ + +  +
Sbjct: 438 DEM---KQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYY 494

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   KA + YE M+      D      ++  LAKSGRL  A ++F E+K     P  
Sbjct: 495 GKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDT 554

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             +  ++    KA + D ++K++ +M      P   +  SLI++  KAG+ D A +++ +
Sbjct: 555 ITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQ 614

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           ++     P  G +  ++    + GK+   M +  +M  + + P   TY+ +L+    +G 
Sbjct: 615 LKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGA 674

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           V+ A+ +  SMT+ G  P LS+Y  ++  L K +  + A  I  +MK +      +   +
Sbjct: 675 VNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTI 734

Query: 521 LMVYIKDGSVDHALRWLR-FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           L  ++K G +  AL  ++ +    G +T+      L E  +K A  E +    E    S 
Sbjct: 735 LPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSG 794

Query: 580 AKVDLVLYTSVLAHLVRCQDEQNERHLMAI------LSATKHKAHAFLCGLFTGPEQRKQ 633
             +D      ++ HL + Q +  E H +        +S      ++ +CGL        +
Sbjct: 795 ITLDDFFLCPLIKHLCK-QKKALEAHELVKKFKSFGVSLKTGSYNSLICGLV------DE 847

Query: 634 PVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYE 684
            ++      F  +  EL  G   +  N+LL+    MG+  R   + KV  E
Sbjct: 848 NLIDIAEGLFAEMK-ELGCGPDEFTYNLLLD---AMGKSMRIEEMLKVQEE 894



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 154/314 (49%), Gaps = 2/314 (0%)

Query: 222  EMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
            E+V      G+SL + +YN +I  L   + ++++   F ++ +  C  D  +YN+L+   
Sbjct: 820  ELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 879

Query: 281  LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
                   +  ++ E M +        TY  +I  L KS RL+ AI L+  +  + F P+ 
Sbjct: 880  GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 939

Query: 341  NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
              +  L+D + KAGR++ +  ++ EM   G + +  +Y  L+  +  AG  +    L+ +
Sbjct: 940  CTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQD 999

Query: 401  MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
            M   G  P+   +T+II++  K+G+L+  ++ F  +   G  P   TY+ L++    S +
Sbjct: 1000 MVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKR 1059

Query: 461  VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
            ++ A+ L+N M   G+ P L TY +L+  L K      A K+  E+ T G+  +V   + 
Sbjct: 1060 LEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNA 1119

Query: 521  LM-VYIKDGSVDHA 533
            L+  Y   GS D A
Sbjct: 1120 LIRGYSVSGSTDSA 1133



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 156/317 (49%), Gaps = 1/317 (0%)

Query: 241  VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
            +I++L K  K   ++   KK       + T SYN L+   +++ L   A  ++  M++  
Sbjct: 805  LIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELG 864

Query: 301  CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            C  D  TY L++ ++ KS R++  +K+ +EM  + +  ++  + +++  + K+ RL+ ++
Sbjct: 865  CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 924

Query: 361  KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             +Y  +   G  P+   Y  L++   KAG+++ A  L++EM   G + N  ++ +++  H
Sbjct: 925  DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 984

Query: 421  AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
              +G  +    +F DM   G  P   +Y+ +++    +GQ++  +  +  +   GL P L
Sbjct: 985  RIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDL 1044

Query: 481  STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRF 539
             TY  L+  L K K ++ A  +  EM+  G   ++   + L++++ K G    A +    
Sbjct: 1045 ITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEE 1104

Query: 540  MGSSGIRTNNFIVRQLF 556
            + + G + N F    L 
Sbjct: 1105 LLTKGWKPNVFTYNALI 1121



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 180/404 (44%), Gaps = 4/404 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y +L     + RD + +L L  EM     K  +    +Y   I+ L +A + + 
Sbjct: 271 VPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVY---SYTICIRVLGQARRFDE 327

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y    ++ +  CK D  ++ VL+ +  + G    A +++  M+K +   D  TY  ++ 
Sbjct: 328 AYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLD 387

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
             A +G   + ++++  MK   +  +   + +++D++ + GR+  +++++ EM+  G  P
Sbjct: 388 KFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVP 447

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y SLI  + KA +   AL L+  M I G +PN     + I  + KSG+   A+  +
Sbjct: 448 EQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRY 507

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M+  G +P     + +L   A SG++  A ++++ + + G+ P   TYT ++   +K 
Sbjct: 508 ELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKA 567

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
              D A KI  +M       DV   + L+    K G  D A +    +    +   +   
Sbjct: 568 SKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTY 627

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L     +    +    LLE    S    +L+ Y ++L  L +
Sbjct: 628 NTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCK 671



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/561 (19%), Positives = 225/561 (40%), Gaps = 48/561 (8%)

Query: 122 VGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSL 181
             G+  P L+AS  +K    + R +  P      D+ +    ++H   AL+  +    +L
Sbjct: 102 TAGVSSPGLSASRPSK--RRIGRARVQP---PPRDERRAAEDVIH---ALRSADGPAEAL 153

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA---- 237
             FR A R+   V        + D++ +      M  +FD M     K  +  F+A    
Sbjct: 154 ERFRSAARRPRVVHTTASCNYMLDLMRDHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGG 213

Query: 238 ----------------------------YNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
                                       YN ++ +L K+     +   +K ++       
Sbjct: 214 LGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPS 273

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            ++Y+VLM  F  +        +   ME      +  +Y + I  L ++ R D A ++  
Sbjct: 274 VRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILA 333

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EM+    +P       L+  +  AGR+  +  V+ +M+    +P    Y++L++ +A  G
Sbjct: 334 EMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNG 393

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           +  + + +W+ M+  G+  N   +T +I++  + G++  A+ +F +M++ G +P   +Y+
Sbjct: 394 ESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 453

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+     + +   A++L+  M   G +P   T+   +    K      A +    MK+ 
Sbjct: 454 SLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 513

Query: 510 GYSVDVSASD-VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G   DV A + VL    K G +  A R    + + G+  +      + + C K + ++ A
Sbjct: 514 GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEA 573

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM-----AILSATKHKAHAFLCG 623
             +    +E+    D+++  S++  L +         +        L  T    +  L G
Sbjct: 574 VKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAG 633

Query: 624 LFTGPEQRKQPVLSFVREFFH 644
           L  G E + + V+  + E +H
Sbjct: 634 L--GREGKVKEVMHLLEEMYH 652



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 3/288 (1%)

Query: 195  PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
            P +  Y +L D + +S   + ML + +EM     K   S +  YN +I  L K+ +LE +
Sbjct: 867  PDEFTYNLLLDAMGKSMRIEEMLKVQEEM---HRKGYESTYVTYNTIISGLVKSRRLEQA 923

Query: 255  YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               +  ++         +Y  L+   L  G    A  ++  M +  C  + + Y +++  
Sbjct: 924  IDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG 983

Query: 315  LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
               +G  +    LFQ+M ++   P    +  ++D++ KAG+L+  +  + ++   G  P 
Sbjct: 984  HRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPD 1043

Query: 375  APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
               Y  LI+   K+ +L+ A+ L++EM+  G  PN   +  +I    K+GK   A  ++ 
Sbjct: 1044 LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYE 1103

Query: 435  DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            ++   G+ P   TY+ L+  ++ SG  DSA   Y  M   G  P  ST
Sbjct: 1104 ELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1151



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 175/441 (39%), Gaps = 39/441 (8%)

Query: 190  QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
             S Y P    Y  + D L ++   +  L +   M   ++K  I   S+YN VI  L K +
Sbjct: 652  HSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM---TTKGCIPDLSSYNTVIYGLVKEE 708

Query: 250  KLEMSY---CCFKKVLDSD--------------------------------CKIDTQSYN 274
            +   ++   C  KKVL  D                                 K D  S +
Sbjct: 709  RYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCH 768

Query: 275  VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
             LM   L K    K+ E  E +     +LD      +I  L K  +   A +L ++ K  
Sbjct: 769  SLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSF 828

Query: 335  NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
                    + SL+  +     +D +  ++ EM+  G  P    Y  L+++  K+ +++  
Sbjct: 829  GVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEM 888

Query: 395  LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            L++ +EM   G+   +  +  II    KS +L+ A+ ++ ++   GF PTP TY  LL+ 
Sbjct: 889  LKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDG 948

Query: 455  HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
               +G+++ A  L+N M   G +   + Y  LL         +    +  +M   G + D
Sbjct: 949  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 1008

Query: 515  VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            + +  +++    K G ++  L + R +   G+  +      L +   K+   E A  L  
Sbjct: 1009 IKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFN 1068

Query: 574  TYVESAAKVDLVLYTSVLAHL 594
               +     +L  Y S++ HL
Sbjct: 1069 EMQKKGIVPNLYTYNSLILHL 1089


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 178/407 (43%), Gaps = 44/407 (10%)

Query: 155 LDKLQFVPKMVHITQALKVINDS----DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNES 210
           LD++   P +V     L+ + DS    +    L R  +R+ +  P    Y +L +   + 
Sbjct: 203 LDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECY--PDVITYTILIEATCKE 260

Query: 211 RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM---------SYCCFKKV 261
                 + L DEM     K  +     YN +I  + K  +L+          SY C   V
Sbjct: 261 SGVGQAMKLLDEMRDKGCKPDVV---TYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNV 317

Query: 262 LDSD--------------------------CKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           +  +                          C     ++N+L+     KGL  +A ++ E 
Sbjct: 318 ITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEK 377

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +  C+ +  +Y  ++ +L K  +++ AI+    M  R   P    + +L+ ++ K G+
Sbjct: 378 MPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGK 437

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D ++++  ++   G  P    Y ++I+  +K GK D A++L DEM+  G +P+   ++ 
Sbjct: 438 VDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYST 497

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           ++   ++ GK+D A++ F D+E  G  P   TY+ ++     + Q   A+     M + G
Sbjct: 498 LVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARG 557

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            +P  ++Y  L+  LA   L   A ++L E+ + G     SA  V++
Sbjct: 558 CKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVV 604



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 159/361 (44%), Gaps = 4/361 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           A   +I+ L K  K   +    + + DS    D  +YNVL++ +   G    A ++ + M
Sbjct: 147 ACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRM 206

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  ++ +L  SG+L  A+++     +R   P    +  L+++  K   +
Sbjct: 207 S---VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGV 263

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +MK+  EM+  G +P    Y  LI    K G+LD A+R  + M   G +PN     +I
Sbjct: 264 GQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNII 323

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + S   +G+   A     +M R G  P+  T++ L+      G +  A+ +   M   G 
Sbjct: 324 LRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGC 383

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P   +Y  LL  L K K ++ A + L  M + G   D+   + L+  + KDG VD A+ 
Sbjct: 384 TPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 443

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L  +GS G          + +   K    + A  LL+       K D++ Y++++  L 
Sbjct: 444 ILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLS 503

Query: 596 R 596
           R
Sbjct: 504 R 504



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 152/337 (45%), Gaps = 1/337 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I+   K   +  +     ++ D  CK D  +YNVL+     +G   +A      M
Sbjct: 249 TYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHM 308

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  T+ +++ S+  +GR   A K   EM  +   PS   F  L++ + + G +
Sbjct: 309 PSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLI 368

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ V  +M   G  P++  Y  L+ +  K  K++ A+   D M   G  P+   +  +
Sbjct: 369 GRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTL 428

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + +  K GK+D+A+ I   +   G  P   TY+ +++  +  G+ D A+KL + M   GL
Sbjct: 429 LTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGL 488

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +P + TY+ L+  L++   VD A     +++ MG   + ++ + +++   K      A+ 
Sbjct: 489 KPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAID 548

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           +L +M + G +        L E      L + A  LL
Sbjct: 549 FLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELL 585



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 127/321 (39%), Gaps = 41/321 (12%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L ++G L+   K  ++M  R   P      SL+  + K G+   + +V   ++  G  P 
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI  Y K G++ +AL+L D M ++   P+   +  I+ +   SGKL  AM +  
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRMSVS---PDVVTYNTILRTLCDSGKLKEAMEVLD 236

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
              +    P   TY+ L+E       V  AMKL + M   G +P + TY  L+  + K  
Sbjct: 237 RQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEG 296

Query: 495 LVDV-----------------------------------AAKILLEMKTMGYSVDVSASD 519
            +D                                    A K L EM   G S  V   +
Sbjct: 297 RLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFN 356

Query: 520 VLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
           +L+ ++ + G +  A+  L  M   G   N+     L  +  K+   E A   L+  V  
Sbjct: 357 ILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSR 416

Query: 579 AAKVDLVLYTSVLAHLVRCQD 599
               D+V Y ++L  L  C+D
Sbjct: 417 GCYPDIVTYNTLLTAL--CKD 435


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 147/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L  FR  +   ++VP D C  +L   + + + F  +   + E++       +  F   N
Sbjct: 85  ALECFRLTREHKFWVPFDTCRKVLEHFM-KLKYFKSVWGFYKEILECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F ++     +    S+N LM  ++  G   + F +  +M   
Sbjct: 141 ILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  +++ A +LF EM      P+   F +L+D   K G +D +
Sbjct: 201 GIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M+ Y EM   G  P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      GQ   A K+   M S GL+P 
Sbjct: 321 SCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
             TYT ++    K+  V + +K+L EM+  G+
Sbjct: 381 NGTYTMIINEFCKKGDVKMGSKLLKEMQRDGH 412



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 138/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++  K    +  +  +K++L+         +N+LM  F  +G    A  +++
Sbjct: 101 FDTCRKVLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            + K        ++  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 161 EITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKES 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           +++ + +++ EM G G  P+   + +LI+ + K G +D A+  + EM   GF P+   + 
Sbjct: 221 KMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +++A K    M   
Sbjct: 281 TLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   D     +++  + K G V   
Sbjct: 341 NIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMG 400

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 401 SKLLKEMQRDG 411



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 143/317 (45%), Gaps = 2/317 (0%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  A++ F+  +E  F   F+    +++   K     
Sbjct: 59  KGAQRSDVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           +    Y E+  CG+  S   +  L+  + K G++  A  ++DE+   G RP+   F  ++
Sbjct: 119 SVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       +++ A +L++ M   GL 
Sbjct: 179 NGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   +D+A +   EM   G+S D+   + L+  + K+G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L +   K    E+A    +  ++   ++D V YT++++ L R
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCR 358

Query: 597 -CQDEQNERHLMAILSA 612
             Q    E+ L  +LS 
Sbjct: 359 EGQSVGAEKMLREMLSV 375



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 92/214 (42%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y+VL+     +     A E+++ M       +G T+  +I    K+G +D A++ +
Sbjct: 205 DVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAY 264

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM  + F P    + +L+  + K G L  +  +  EM   G +P    Y +LI+   K 
Sbjct: 265 KEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKE 324

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+TA +    M     R +   +T +I    + G+   A  +  +M   G  P   TY
Sbjct: 325 GDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTY 384

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           + ++      G V    KL   M   G  P + T
Sbjct: 385 TMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 4/336 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEENLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A  LF EM ++   P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           + TYT ++    K+  V   +K+L EM+  GY   V
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSV 416



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 148/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+    K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD     +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G+ P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 168/381 (44%), Gaps = 6/381 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +++V+  +AK+   ++    F  +       D  SYN+++           A  +   M 
Sbjct: 13  FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMM 72

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K     D  T   +I    +  R+  AI L  +M+E  FRP   I+ +++D   K G ++
Sbjct: 73  KFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVN 132

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +++++  M+  G R  A  Y SL+     +G+   A RL  +M +    PN   FT +I
Sbjct: 133 DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 192

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K GK   AM ++ +M R    P   TY+ L+      G+VD A ++ + M + G  
Sbjct: 193 DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCL 252

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P + TY  L+    K K VD   K+  EM   G   D ++ + ++  Y + G  D A   
Sbjct: 253 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 312

Query: 537 LRFMGSS-GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
              M S   IRT + +   L+  CM N   E A  L E   +S  ++D+  Y  V+  + 
Sbjct: 313 FSRMDSRPNIRTYSIL---LYGLCM-NWRVEKALVLFENMQKSEIELDITTYNIVIHGMC 368

Query: 596 RCQDEQNERHLMAILSATKHK 616
           +  + ++   L   LS    K
Sbjct: 369 KIGNVEDAWDLFRSLSCKGLK 389



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + LFD M  D  +        YN ++  L  + +   +    + ++  D   +  ++  +
Sbjct: 135 VELFDRMERDGVRADAV---TYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAV 191

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           + +F+ +G   +A ++YE M +     D  TY  +I  L   GR+D A ++   M  +  
Sbjct: 192 IDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGC 251

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + +L++   K+ R+D   K++ EM   G       Y ++I+ Y +AG+ D A  
Sbjct: 252 LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQE 311

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++  M     RPN   +++++     + +++ A+ +F +M+++      +TY+ ++    
Sbjct: 312 IFSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMC 368

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             G V+ A  L+ S++  GL+P + +YT +++   +++  D +  +  +M+  G
Sbjct: 369 KIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 422



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 164/394 (41%), Gaps = 13/394 (3%)

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           + +S+++D ++SLF  M  +    G  L+S YN VI  L +  +  ++     K++    
Sbjct: 20  IAKSKNYDLVISLFHHM--EVCGIGHDLYS-YNIVINCLCRCSRFVIALSVVGKMMKFGY 76

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           + D  + + L+  F      + A ++   ME+     D   Y  +I    K G ++ A++
Sbjct: 77  EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVE 136

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           LF  M+    R     + SLV  +  +GR   + ++  +M      P+   + ++I+ + 
Sbjct: 137 LFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFV 196

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K GK   A++L++EM      P+   +  +I      G++D A  +   M   G LP   
Sbjct: 197 KEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVV 256

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TY+ L+     S +VD   KL+  M   GL     TY  ++    +    D A +I   M
Sbjct: 257 TYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM 316

Query: 507 KT----MGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            +      YS+      +L     +  V+ AL     M  S I  +      +     K 
Sbjct: 317 DSRPNIRTYSI------LLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKI 370

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              E A  L  +      K D+V YT++++   R
Sbjct: 371 GNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCR 404



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/288 (18%), Positives = 117/288 (40%), Gaps = 10/288 (3%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVI---NDSDTS 180
           G++   +  +++   +    RW     L   +     VP ++  T  + V         +
Sbjct: 145 GVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEA 204

Query: 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNR 240
           + L+    R+    P    Y  L + L      D    + D MV   +K  +     YN 
Sbjct: 205 MKLYEEMTRRC-VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV---TKGCLPDVVTYNT 260

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I    K+ +++     F+++       DT +YN ++  +   G P  A EI+  M+   
Sbjct: 261 LINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRP 320

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              +  TY +++  L  + R++ A+ LF+ M++         +  ++  M K G ++ + 
Sbjct: 321 ---NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAW 377

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
            ++  +   G +P    Y ++I  + +  + D +  L+ +M+  G  P
Sbjct: 378 DLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 142/301 (47%), Gaps = 1/301 (0%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           + +++    K G +  A K+F E+ +R+ +P+   F +L++   K G LD   ++  +M+
Sbjct: 243 FNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME 302

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
               RP    Y +LI +  K  K+D A  L+DEM   G  PN  +FT +I  H+++G++D
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEID 362

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           +    +  M   G  P    Y+ L+     +G + +A  + + M   GLRP   TYT L+
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLI 422

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
               +   V+ A +I  EM   G  +D V  S ++    K+G V  A R LR M  +GI+
Sbjct: 423 DGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIK 482

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            ++     + ++  K    ++   LL+          +V Y  +L  L +    +N   L
Sbjct: 483 PDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADML 542

Query: 607 M 607
           +
Sbjct: 543 L 543



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 159/351 (45%), Gaps = 8/351 (2%)

Query: 259 KKVLDSDCKIDTQ----SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +KV D   K   Q    S+N L+  +   G   + F +   MEK     D  TY  +I +
Sbjct: 260 QKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINA 319

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K  ++D A  LF EM +R   P+  IF +L+    + G +D   + Y +M   G +P 
Sbjct: 320 LCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPD 379

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
             +Y +L+  + K G L  A  + D M   G RP+   +T +I+   + G ++ A+ I  
Sbjct: 380 IVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRK 439

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M++ G       +S L+      G+V  A +    M  AG++P   TYT ++    K+ 
Sbjct: 440 EMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKG 499

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
                 K+L EM++ G+   V   +VL+  + K G + +A   L  M + G+  ++    
Sbjct: 500 DAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYN 559

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
            L E   ++A   S+K  ++   E     DL  Y S++  L R   +   R
Sbjct: 560 TLLEGHHRHA--NSSKRYIQK-PEIGIVADLASYKSIVNELDRASKDHRNR 607



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 6/293 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L + L +    DG   LFDEM          +F+    +I   ++  ++++    ++
Sbjct: 313 YSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTT---LIHGHSRNGEIDLMKESYQ 369

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+L    + D   YN L+  F   G    A  I + M +     D  TY  +I    + G
Sbjct: 370 KMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGG 429

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            ++ A+++ +EM +         F++LV  M K GR+  + +   EM   G +P    Y 
Sbjct: 430 DVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYT 489

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            +++++ K G   T  +L  EM+  G  P+   + +++    K G++  A  +   M   
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNI 549

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           G +P   TY+ LLE H       ++ K Y      G+   L++Y +++  L +
Sbjct: 550 GVVPDDITYNTLLEGHHRHA---NSSKRYIQKPEIGIVADLASYKSIVNELDR 599



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 129/333 (38%), Gaps = 36/333 (10%)

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G +  AI+ F+  ++  F        +L+D M K     T    YME+   G   +  ++
Sbjct: 184 GFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVF 243

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG-------------- 424
             L+  + K G +  A +++DE+     +P    F  +I  + K G              
Sbjct: 244 NILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEK 303

Query: 425 ---------------------KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
                                K+D A  +F +M + G +P    ++ L+  H+ +G++D 
Sbjct: 304 SRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDL 363

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLM 522
             + Y  M S GL+P +  Y  L+    K   +  A  I+  M   G   D ++ + ++ 
Sbjct: 364 MKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLID 423

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            + + G V+ AL   + M  +GI  +      L     K      A+  L   + +  K 
Sbjct: 424 GFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKP 483

Query: 583 DLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           D V YT ++    +  D Q    L+  + +  H
Sbjct: 484 DDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGH 516


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 135/278 (48%), Gaps = 6/278 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           D +  LF  A  +S   P D+  Y +L   L   +  +    LFDEM     +       
Sbjct: 101 DEACKLF--ASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEM---EERGCTPSAP 155

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AY  VI    KA ++E +    KK+LD +   D  + N L+T     G    A EI+E M
Sbjct: 156 AYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERM 215

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +K   +++  ++  M+    K+G++  A +   EM+ R  +P+   F +L++ +G+A   
Sbjct: 216 KKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYA 275

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + KV  EM+  G  P    Y  +IE++AKAG +  A  ++ +M  AG   N   + ++
Sbjct: 276 SEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLL 335

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           I++  K+G+   A  I+ DM++ G LP   T + L ++
Sbjct: 336 IDALVKAGRYQDARDIYFDMKKKGILPDAITATVLQQL 373



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 8/339 (2%)

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
           H S  N  +    Y  VIQ L KA  + ++     K++ +  + DT  YNV++       
Sbjct: 43  HGSKPNAYT----YKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKAN 98

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           +  +A +++ SM+   C  D  TY ++I SL +  R + A  LF EM+ER   PS   + 
Sbjct: 99  MIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYT 158

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +++D   KAGR++++M V  +M      P      SLI + ++ G+ + A  +++ M+ +
Sbjct: 159 NVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKS 218

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G   N   F  +++   K+GK+ +A     +ME  G  P   T++ L+     +     A
Sbjct: 219 GVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEA 278

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
            K+   M SAGL P + TYT ++   AK   +  A ++  +M+  G S +V   ++L+  
Sbjct: 279 YKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDA 338

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNF---IVRQLFESC 559
            +K G    A      M   GI  +     +++QL   C
Sbjct: 339 LVKAGRYQDARDIYFDMKKKGILPDAITATVLQQLAGKC 377



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 161/334 (48%), Gaps = 1/334 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N VI    ++ ++      F+++     K +  +Y  ++   +  G    A +  + M K
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIK 77

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D   Y +++  L K+  +D A KLF  MK          +A L+ S+G+  R + 
Sbjct: 78  TGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEE 137

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  ++ EM+  G  PSAP Y ++I+ Y KAG++++A+ +  +M      P+      +I 
Sbjct: 138 ATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLIT 197

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           + +++G+ ++A  IF  M+++G      +++ +L+    +G+V  A +  + M + G++P
Sbjct: 198 AVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKP 257

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWL 537
              T+  L+  L + K    A K+L EM++ G + DV + + ++  + K G++  A    
Sbjct: 258 NSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMF 317

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
             M  +G   N      L ++ +K   Y+ A+ +
Sbjct: 318 GDMEKAGCSANVVTYNLLIDALVKAGRYQDARDI 351


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEENLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A  LF EM ++   P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 149/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 144/319 (45%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  KE  FR  F+    +++ + K     
Sbjct: 59  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E   CG+  S   +  L+ S+ K G++  A  ++D +   G RP+   F  ++
Sbjct: 119 LVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K G L+    +   M+ +G  P   TYS L+       ++D A  L++ M   GL 
Sbjct: 179 NGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L +   K    E+A    +  ++   ++D V YT++++ L  
Sbjct: 299 IDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL-- 356

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 357 CQEGRSVDAEKMLREMLSV 375



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD     +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
          Length = 700

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/496 (22%), Positives = 217/496 (43%), Gaps = 43/496 (8%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K+  LE S   F ++L    K D  ++  L++     GLP +A E +E M 
Sbjct: 176 YNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPNRAVEWFEKMP 235

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  T   MI +  ++G ++ A+ L+   +   +R     F++L+   G AG  D
Sbjct: 236 SFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYD 295

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + +Y EM+  G +P+  +Y  L++S  KA +   A  +  ++   GF PN+  +  +I
Sbjct: 296 GCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALI 355

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-L 476
            ++ ++   + A+ I+  M+  G   T   Y+ LL M A  G VD A +++  M S+G  
Sbjct: 356 RAYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTC 415

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
            P   T+++L+T+ +    V  A   L EM+  G+   +   + ++  Y K   VD  +R
Sbjct: 416 EPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVR 475

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   GI  ++      F  C+ N + ++ K                     +  L+
Sbjct: 476 TFEQVLELGIEPDD-----RFCGCLLNVMTQTPK-------------------EEIGKLI 511

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
            C ++   +     L   +         +    E  ++ VL   +E    ID  +     
Sbjct: 512 GCVEKAKPK-----LGRVEK--------MLVEEENCEEGVLK--KEASELID-SIGSDVN 555

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
           + ++N L++  V + ++ +A  + ++  E  ++   +       WSL +++LS+GAAL A
Sbjct: 556 KAYLNCLIDLCVNLNKLEKACEILQLGLEYDIY-SGLQSKSDTQWSLHLKSLSLGAALTA 614

Query: 716 VMHTLHRFRKRMLYYG 731
           +   ++   +  L  G
Sbjct: 615 LHVWMNDLSEAALTSG 630



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 34/229 (14%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-------------- 223
           + +LSL+  A+ + W +     +  L  +   + ++DG L++++EM              
Sbjct: 260 EMALSLYDRARTEKWRI-DPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNR 318

Query: 224 ----------------VH-DSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
                           +H D   NG    +S Y  +I+   +A   E +   ++++    
Sbjct: 319 LLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKG 378

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-KGECSLDGSTYELMIPSLAKSGRLDAA 324
            ++    YN L+++  + G   +AFEI++ M+  G C  D  T+  +I   +  GR+  A
Sbjct: 379 MELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEA 438

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
               +EM+E  F P+  +  SL+   GKA ++D  ++ + ++   G  P
Sbjct: 439 EAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEP 487



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 64/134 (47%)

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y   ++ + K+  L+ + +L+DEM   G +P+   FT +I    + G  + A+  F  M
Sbjct: 175 LYNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPNRAVEWFEKM 234

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   T + +++ +  +G V+ A+ LY+   +   R    T++ L+ +       
Sbjct: 235 PSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNY 294

Query: 497 DVAAKILLEMKTMG 510
           D    I  EMK++G
Sbjct: 295 DGCLNIYEEMKSLG 308


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 186/403 (46%), Gaps = 21/403 (5%)

Query: 166 HITQALKV-INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGML-SLFDEM 223
           H+  AL   +ND  ++L  F+ A+ Q  ++ G + Y +L  +L  S +  G    L +  
Sbjct: 62  HVIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKLLNRY 121

Query: 224 VHDSSKNGISLFSAY-------------NRVIQYL----AKADKLEMSYCCFKKVLDSDC 266
           V   S     +F  +             +RV  YL     +A+++E +  CF  ++  D 
Sbjct: 122 VSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDV 181

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
                  N+L+T  + + +  +  ++Y  M       D  T  +M+ +  K GR++ A +
Sbjct: 182 IPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEE 241

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
            F+E KER  +     ++ ++ ++ K    +  +++  EM+  G  PS   + S+I +  
Sbjct: 242 YFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACV 301

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
             G +  ALRL +EM   G   N  + T +++ +   G LD A+++F  +   G  P   
Sbjct: 302 AQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKV 361

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TYS L+E   +SG ++ A +LY  M   G+ P +    +LL    K  L + A+K+  E 
Sbjct: 362 TYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEA 421

Query: 507 KTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTN 548
              G + ++   +++M ++ K G +D A   L  M + G+  N
Sbjct: 422 VDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPN 463



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 172/389 (44%), Gaps = 4/389 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++   L +    D   SL D MV+   +  +    +YN +I    +   ++M+   F 
Sbjct: 432 YNIMMSWLCKGGKMDEACSLLDNMVN---QGMVPNVVSYNDMILGHCRKGNMDMASSVFS 488

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +L  D K +  +Y++L+     KG   KA ++++ M     +    T+  +I  L K G
Sbjct: 489 DMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVG 548

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           ++  A    +   E  F PS   + S+VD   K G +D+++ VY EM   G  P+   Y 
Sbjct: 549 QMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYT 608

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SLI  + K+ ++D AL+  DEMR  G   +   ++ +I+   K   ++ A  +F ++   
Sbjct: 609 SLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEV 668

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P    Y+ ++        +++A+  Y  M +  +   L TYT L+  L K   +  A
Sbjct: 669 GLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFA 728

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
           + + +EM + G   D+    VL+  +   G +++A + L  M    +  +  I   L   
Sbjct: 729 SDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAG 788

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLY 587
             +    + A  L +  ++     D V Y
Sbjct: 789 YFREGNLKEAFTLHDEMLDRGLVPDDVTY 817



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/465 (22%), Positives = 190/465 (40%), Gaps = 39/465 (8%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           I QA+    +S+  L L    K + W VP +  +  +        +    L L +EM++ 
Sbjct: 261 IIQAVCKKPNSNLGLELLEEMKERGW-VPSEATFTSVIVACVAQGNMVEALRLKEEMIN- 318

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
                ++L  A + +  Y A+ + L+ +   F K+ +     +  +Y+VL+    N G  
Sbjct: 319 -CGKPMNLVVATSLMKGYCAQGN-LDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNI 376

Query: 287 YKAFEIYESM---------------------------------EKGECSLDGS-TYELMI 312
            KA E+Y  M                                 E  +C +    TY +M+
Sbjct: 377 EKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMM 436

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L K G++D A  L   M  +   P+   +  ++    + G +D +  V+ +M     +
Sbjct: 437 SWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLK 496

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y  LI+   K G  + AL L+D+M      P    F  II    K G++  A   
Sbjct: 497 PNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDK 556

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
             +    GF+P+  TY+ +++     G +DSA+ +Y  M   G+ P + TYT+L+    K
Sbjct: 557 LKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCK 616

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
              +D+A K   EM+  G  +DV+A   L+  + K   ++ A      +   G+  N  +
Sbjct: 617 SNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIV 676

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +          E+A    +  +      DL  YT+++  L++
Sbjct: 677 YNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK 721



 Score = 89.7 bits (221), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 38/329 (11%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L D   +  D +  L LFD+M+   S N       +N +I  L K  ++  +
Sbjct: 497 PNVVTYSILIDGNFKKGDSEKALDLFDQML---SLNIAPTDFTFNTIINGLCKVGQMSEA 553

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               K  L+        +YN ++  F+ +G    A  +Y  M +   S +  TY  +I  
Sbjct: 554 RDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLING 613

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             KS R+D A+K   EM+E+        +++L+D   K   ++++  ++ E+   G  P+
Sbjct: 614 FCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPN 673

Query: 375 APMY-----------------------------------VSLIESYAKAGKLDTALRLWD 399
             +Y                                    +LI+   K G+L  A  L+ 
Sbjct: 674 RIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYM 733

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           EM   G  P+   F +++      G+L+ A  I  +M+R    P+   Y+ L+  +   G
Sbjct: 734 EMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREG 793

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
            +  A  L++ M   GL P   TY  L+ 
Sbjct: 794 NLKEAFTLHDEMLDRGLVPDDVTYDILIN 822



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 6/249 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
           D++L+++R    +    P    Y  L +   +S   D  L   DEM     + G+ L  +
Sbjct: 586 DSALAVYR-EMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEM----REKGLELDVT 640

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AY+ +I    K   +E +   F ++L+     +   YN +++ F +      A   Y+ M
Sbjct: 641 AYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKM 700

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I  L K GRL  A  L+ EM  +   P    F  LV+ +   G+L
Sbjct: 701 INDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQL 760

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + K+  EM      PS  +Y +LI  Y + G L  A  L DEM   G  P+   + ++
Sbjct: 761 ENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDIL 820

Query: 417 IESHAKSGK 425
           I    K  +
Sbjct: 821 INGKFKGDR 829



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 117/264 (44%), Gaps = 5/264 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH-DSSKNGISLFSAYNRVIQYLAKA 248
           +  ++P    Y  + D   +  + D  L+++ EM     S N ++    Y  +I    K+
Sbjct: 562 EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVT----YTSLINGFCKS 617

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
           ++++++     ++ +   ++D  +Y+ L+  F  +     A +++  + +   S +   Y
Sbjct: 618 NRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVY 677

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             MI        ++AA+  +++M           + +L+D + K GRL  +  +YMEM  
Sbjct: 678 NSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLS 737

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P    +  L+      G+L+ A ++ +EM      P+  ++  +I  + + G L  
Sbjct: 738 KGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKE 797

Query: 429 AMSIFTDMERAGFLPTPSTYSCLL 452
           A ++  +M   G +P   TY  L+
Sbjct: 798 AFTLHDEMLDRGLVPDDVTYDILI 821


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 163/353 (46%), Gaps = 2/353 (0%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMS 254
           G E  V  +  L       G+L +   + H  S++G+   +  YN +I  L +  +++ +
Sbjct: 350 GCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 409

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +     +  + C  +  +YN ++  +   G P KA  +  +M +   S +  TY  +I  
Sbjct: 410 FVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
              SG   +A+++   M++   +P    +  L+    K  +++++  ++ EM   G  P+
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +LI+ Y K  KLDTA  L + M+ +G RPN   + ++I    K      A  +  
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 589

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G  P   TY+ +++    +G    A++++N M   G  P L TY++L+  L +  
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
            V+ A  +  E++  G   D ++   ++  YI  G V+HA  +L  M  +G +
Sbjct: 650 KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 173/382 (45%), Gaps = 16/382 (4%)

Query: 228 SKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
           S++G+ +   AY+ ++ +L++          + ++L    + +   YN ++      G  
Sbjct: 172 SQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNV 231

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
             A  I + + + E S D  TY  MI    +   LD+A+++F +M +    P+   +++L
Sbjct: 232 ADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTL 291

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           ++ +  +GR++ +  +  EM   G  P+A      I +    G  + A RL+ +M+  G 
Sbjct: 292 INGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGC 351

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            PN   +T +I     SG L +A+ +F  M R G  P   TY+ L+ +   + ++  A  
Sbjct: 352 EPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 467 LYNSMTSAGLRPGLSTYTALL---TLLAKRKLVDVAAKILLEMKTM---GYSVD-VSASD 519
           + N M   G  P + TY  ++    +L   K      K +L M  M   G+S + V+ + 
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPK------KAMLVMNNMLQRGHSANLVTYNT 465

Query: 520 VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           ++  Y   G+   ALR L  M   G + + +   +L     K +  ESA  L    V+  
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525

Query: 580 AKVDLVLYTSVLAHLVRCQDEQ 601
              + V YT+++     C+DE+
Sbjct: 526 LCPNEVTYTALIDGY--CKDEK 545



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 162/395 (41%), Gaps = 36/395 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN VI  L K   +  +    KKV +S+   DT +Y  ++     K     A +++  M 
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K  C  +  TY  +I  L  SGR++ A  L +EM      P+ +     + ++   G  +
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYE 337

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM---------------- 401
            + +++++M+  G  P+   Y +LI     +G L  A+ L+  M                
Sbjct: 338 DAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALI 397

Query: 402 -------RIA------------GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
                  RI             G  PN   +  +I+ +   G    AM +  +M + G  
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHS 457

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
               TY+ +++ +  SG   SA+++ + M   G +P   +YT L+    K   ++ A  +
Sbjct: 458 ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGL 517

Query: 503 LLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             EM   G    +V+ + ++  Y KD  +D A   L  M  SG R N      L     K
Sbjct: 518 FNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTK 577

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +  A+ L +  +E     ++V YT+++  L +
Sbjct: 578 QNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 612



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 142/349 (40%), Gaps = 6/349 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAY 238
           ++ LF    R   + P    Y  L ++L E+R       + + M     +NG S     Y
Sbjct: 374 AIGLFHRMSRDGVF-PNTVTYNALINILVENRRIKYAFVVLNLM----GRNGCSPNIVTY 428

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I+        + +      +L      +  +YN ++  + + G    A  I + M  
Sbjct: 429 NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRD 488

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
           G C  D  +Y  +I    K  ++++A  LF EM +    P+   + +L+D   K  +LDT
Sbjct: 489 GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDT 548

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  +   M+  G RP+   Y  LI    K      A  L   M   G  PN   +T +I+
Sbjct: 549 ATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMID 608

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
              K+G   +A+ +F  M   G LP   TYS L+      G+V+ A  L+  +   GL P
Sbjct: 609 GLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
              TY  ++        V+ A   L  M   G    +    VL+  +K+
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 26/370 (7%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM- 296
           YN +I+    +     +      + D  CK D  SY  L+  F        AF ++  M 
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           + G C  +  TY  +I    K  +LD A  L + MK    RP+   +  L+  + K    
Sbjct: 523 DDGLCP-NEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 581

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++   M   G  P+   Y ++I+   K G    AL ++++M   G  PN   ++ +
Sbjct: 582 SGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 641

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I +  + GK++ A ++F ++ER G +P   TY  ++E +  SG+V+ A      M  AG 
Sbjct: 642 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 701

Query: 477 RPGLSTYTALLT------LLAKRKLVDVAAKILLEMKTMGY-SVDVSASDVLMVYIKDGS 529
           +P L TY  L+       LLA ++L   A   ++   + GY + D  A  V+   + +  
Sbjct: 702 QPTLWTYGVLIKGLKNEYLLADQRL--AALPDVVPNCSFGYQTTDQDAVSVMSAKLAE-- 757

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +D  L          ++  N +V  L  +      +  A  LL + +      D   Y S
Sbjct: 758 LDPGL---------SVQVQNALVSNLSTA----GRWFEANELLGSMISQGLCPDQEAYNS 804

Query: 590 VLAHLVRCQD 599
           +L  L+R ++
Sbjct: 805 LLCSLLRVRN 814



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 172/420 (40%), Gaps = 9/420 (2%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           +D D++L +F    ++    P    Y  L + L +S   +    L  EM+     +GI L
Sbjct: 264 HDLDSALQVFNQMAKEGCE-PNTVTYSTLINGLCDSGRVNEAFDLIREMI----LHGI-L 317

Query: 235 FSAYNRVIQYLAKADK--LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
            +A+      +A  D    E ++  F  + +  C+ +  +Y  L++     G+   A  +
Sbjct: 318 PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGL 377

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  M +     +  TY  +I  L ++ R+  A  +   M      P+   +  ++     
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G    +M V   M   GH  +   Y ++I+ Y  +G   +ALR+ D MR  G +P+   
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +T +I    K  K++ A  +F +M   G  P   TY+ L++ +    ++D+A  L   M 
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVD 531
            +G RP + TY  L+  L K+     A ++   M   G +   V+ + ++    K+GS  
Sbjct: 558 RSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTS 617

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            AL     M   G   N      L  +  +    E A+ L           D + Y  ++
Sbjct: 618 LALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 164/382 (42%), Gaps = 31/382 (8%)

Query: 163 KMVHITQALKVINDSDTSLSLFRWAK--RQSWYVPGDECYVMLFDVLNESRDFDGMLSLF 220
            +V     +K   DS  + S  R     R     P +  Y  L     +    +    LF
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518

Query: 221 DEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           +EMV D    N ++    Y  +I    K +KL+ +    + +  S C+ + Q+YNVL+  
Sbjct: 519 NEMVDDGLCPNEVT----YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHG 574

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
              +     A E+ + M +     +  TY  MI  L K+G    A+++F +M E+   P+
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              ++SL+ ++G+ G+++ +  ++ E++  G  P    YV +IE+Y  +GK++ A     
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKL-DIAMSIFTDM---------------------E 437
            M  AG +P    + ++I+       L D  ++   D+                     +
Sbjct: 695 RMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAK 754

Query: 438 RAGFLPTPSTY--SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
            A   P  S    + L+   +++G+   A +L  SM S GL P    Y +LL  L + + 
Sbjct: 755 LAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRN 814

Query: 496 VDVAAKILLEMKTMGYSVDVSA 517
           VD+A  +   M T G  V ++ 
Sbjct: 815 VDLAMGVFKHMSTQGCEVHLNG 836



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 107/262 (40%), Gaps = 1/262 (0%)

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           + +   R     +++L+  + + G     M  Y  M   G +P+  +Y ++I +  K G 
Sbjct: 171 LSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGN 230

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +  A  +  ++  +   P+   +T +I  H +   LD A+ +F  M + G  P   TYS 
Sbjct: 231 VADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYST 290

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L+     SG+V+ A  L   M   G+ P   T T  +  L      + A ++ ++MK  G
Sbjct: 291 LINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKG 350

Query: 511 YSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
              +V     L+  +   G +  A+     M   G+  N      L    ++N   + A 
Sbjct: 351 CEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAF 410

Query: 570 PLLETYVESAAKVDLVLYTSVL 591
            +L     +    ++V Y  ++
Sbjct: 411 VVLNLMGRNGCSPNIVTYNEMI 432


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 158/355 (44%), Gaps = 40/355 (11%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           S   FRWA     +      Y  +  +L ++R F+ M+++  EM     K G     A+ 
Sbjct: 211 SYRFFRWATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEM----GKAGALSMDAFK 266

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
             I+  A A +++ +   F+ +  +      +S+N L+     +GL  +A ++++ M  G
Sbjct: 267 VAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMH-G 325

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
           + S D  +Y  ++ +   +  L  A +++ EM E+                         
Sbjct: 326 QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEK------------------------- 360

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
                     G  P   ++ ++IE   +  +   A+++++ M+  G  PN   +TM+I  
Sbjct: 361 ----------GMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRD 410

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           H K GK+D+AM  F +M+ A   P  +TY+CLL  + ++ Q+D    +   MT  G  P 
Sbjct: 411 HCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPD 470

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534
             TY AL+ LL  R + D AA+I  +M   G    +   +++M     G  ++A+
Sbjct: 471 ARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAM 525



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 120/290 (41%), Gaps = 6/290 (2%)

Query: 188 KRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247
           K    Y P    Y  L      +R+      +++EM+       + +   +N +I+ L +
Sbjct: 322 KMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVV---HNTMIEGLLR 378

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
             +   +   F+ +       +  +Y +L+     +G    A E +E M++ +C  D +T
Sbjct: 379 GQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVAT 438

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  ++     + ++D    + +EM ++   P    + +L+  +      D + ++Y +M 
Sbjct: 439 YTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMI 498

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTAL--RLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
             G  P+   Y  +++SY   G  + A+   +W+EM   G  P+   +T+ I  H + G+
Sbjct: 499 KKGLEPTIHTYNMMMKSYF-VGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINRHIRHGR 557

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
            + A     +M   G       Y+      + +G+ D   +L   +  AG
Sbjct: 558 PEEAYKYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFELAQKVKFAG 607



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 93/207 (44%), Gaps = 3/207 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I+   K  K++M+  CF+++ ++ C+ D  +Y  L+  + N     +   + E M 
Sbjct: 404 YTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMT 463

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  D  TY  +I  L      D A +++++M ++   P+ + +  ++ S    G  +
Sbjct: 464 QKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSY-FVGDSN 522

Query: 358 TSM--KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +M   V+ EM   G  P    Y   I  + + G+ + A +  +EM   G +     +  
Sbjct: 523 YAMGCAVWEEMHQRGICPDVNSYTVFINRHIRHGRPEEAYKYIEEMINKGMKAPQIDYNK 582

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFL 442
                +K+GK DI   +   ++ AG L
Sbjct: 583 FAADFSKAGKPDILFELAQKVKFAGKL 609


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 197/434 (45%), Gaps = 11/434 (2%)

Query: 196 GDECYVMLFDVLNESRDFDGML--SLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLE 252
           G E  ++ F+ L  +R   G +  +L  E++++  ++GI      YN +I   ++   LE
Sbjct: 252 GCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLE 311

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   +  ++   C+ D  +YN +++++   G+  +A  +++ +E      D  TY  ++
Sbjct: 312 EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLL 371

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            + A+ G +D   ++ ++M +  F      + +++   GK G+ D + ++Y +M+  G  
Sbjct: 372 YAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRS 431

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P A  Y  LI+S  KA  +  A  +  EM  A  +P    F+ +I  +AK+GK   A   
Sbjct: 432 PDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEET 491

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  M R+G  P    YS +L++     +   AMKLY  M     +P  + Y  +L +L K
Sbjct: 492 FDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 551

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
               +   K++ +M+ +     +++  +  + +K    DHA   LR   S G   +   +
Sbjct: 552 ENREEDVHKVVKDMEEL---CGMNSQVICSILVKGECFDHAANMLRLAISQGCELDRENL 608

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
             +  S   +  +  A+ LL+   E ++    ++  +++  L +     +     A+   
Sbjct: 609 LSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGD-----ALREY 663

Query: 613 TKHKAHAFLCGLFT 626
            K +     CG FT
Sbjct: 664 GKARDFGLFCGSFT 677



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 115/555 (20%), Positives = 229/555 (41%), Gaps = 47/555 (8%)

Query: 268  IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            +D + +N L+  +   G   +A  I+ +M +   S    +   ++ +L   GRLD    +
Sbjct: 780  VDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVV 839

Query: 328  FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             QE+++  F+ S +    ++D+   AG +    K+Y  M+  G+ P+  +Y  +I   AK
Sbjct: 840  IQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAK 899

Query: 388  AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
              ++     +  EM +A F+P+  ++  +++ +   G       ++  ++ AG  P   T
Sbjct: 900  GKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDT 959

Query: 448  YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
            Y+ L+ M+    + +  + L + M   GL P L TY +L++   K ++V+ A ++   + 
Sbjct: 960  YNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLL 1019

Query: 508  TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
            +    +D S   ++M ++   G+   A + L  M  +G+      +  L  S   +   E
Sbjct: 1020 SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPE 1079

Query: 567  SAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDE-------------------------- 600
             A+ +L+        +  + Y+SV+   ++  D                           
Sbjct: 1080 EAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFV 1139

Query: 601  ------QNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGA 654
                  Q+    + +L A +         L T   ++   ++S V      +   LE+ A
Sbjct: 1140 RAASLSQHTSEAIVLLKALRDTGFDLPIRLLT---EKSDSLVSEVDNCLEKLG-PLEDNA 1195

Query: 655  ARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALI 714
            A  FVN L + L        A  V+++A +  ++   +       W  D R +S G+AL+
Sbjct: 1196 AFNFVNALEDLLWAFELRATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALV 1255

Query: 715  AVMHTLHRFRKRMLY-YGVVPRRIKLVTGP------TLKIVIAQMLSSVESPFEVSKV-- 765
             +   L   +   L  Y + P+ + L+TG       +L   +   L  + SPF   K   
Sbjct: 1256 GLTLWLDHMQDASLQGYPLSPKSVVLITGTAEYNMVSLNSTLKAFLWEMGSPFLPCKTRS 1315

Query: 766  -VLRAPGDSVMEWFK 779
             +L A   S+  W K
Sbjct: 1316 GLLVAKAHSLRMWLK 1330



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 174/426 (40%), Gaps = 42/426 (9%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L ++ W   + WY P       +  V                                 
Sbjct: 171 ALEVYEWLNLRHWYSPNARMLATILSV--------------------------------- 197

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
                L KA++  ++   F +  ++      Q YN +M ++   G   K  E+ + M   
Sbjct: 198 -----LGKANQEALAVEIFARA-EAASGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSR 251

Query: 300 ECSLDGSTYELMIPSLAKSGRL--DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            C  D  ++  +I +  KSG +  + AI+L  E++    +P    + +L+ +  +   L+
Sbjct: 252 GCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLE 311

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++KVY +M     +P    Y ++I  Y + G    A RL+ ++   GF P+   +  ++
Sbjct: 312 EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLL 371

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            + A+ G +D    I  DM + GF     TY+ ++ M+   GQ D A +LY+ M  +G  
Sbjct: 372 YAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRS 431

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P   TYT L+  L K  ++  AA+++ EM        +     L+  Y K G    A   
Sbjct: 432 PDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEET 491

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              M  SGI+ ++     + +  ++      A  L +  V  + K D  LY  +L  L +
Sbjct: 492 FDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 551

Query: 597 CQDEQN 602
              E++
Sbjct: 552 ENREED 557



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 145/309 (46%), Gaps = 10/309 (3%)

Query: 324 AIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
           A+++++ +  R+ + P+  + A+++  +GKA +   +++++   +      +  +Y +++
Sbjct: 171 ALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGN-TVQVYNAMM 229

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL--DIAMSIFTDMERAG 440
             YA+ G+      L D MR  G  P+   F  +I +  KSG +  ++A+ +  ++ R+G
Sbjct: 230 GVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSG 289

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY+ L+   +    ++ A+K+YN M +   +P L TY A++++  +  +   A 
Sbjct: 290 IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAG 349

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++  ++++ G+  D V+ + +L  + ++G+VD        M   G   +      +    
Sbjct: 350 RLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMY 409

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-----AHLVRCQDEQNERHLMAILSATK 614
            K   ++ A  L      S    D V YT ++     A++++   E     L A +  T 
Sbjct: 410 GKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTL 469

Query: 615 HKAHAFLCG 623
               A +CG
Sbjct: 470 RTFSALICG 478



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 107/223 (47%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           KA  +  S+ +    +D   +  +I + A SG  + A  +F  M      P+ +    L+
Sbjct: 765 KAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLM 824

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
            ++   GRLD    V  E+Q  G + S      +++++A AG +    +++  M+ AG+ 
Sbjct: 825 QALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYF 884

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P   L+ ++I   AK  ++    ++ ++ME A F P  S ++ +L+++   G      ++
Sbjct: 885 PTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQV 944

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           Y  +  AGL+P   TY  L+ +  + +  +    ++ EM+ +G
Sbjct: 945 YQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVG 987



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/422 (19%), Positives = 185/422 (43%), Gaps = 15/422 (3%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN-ESRDFDGMLSLFDEMVHDSSKNGIS 233
           N+S  ++ L++     S + P    Y ++  VL  E+R+ D         VH   K+   
Sbjct: 518 NESGKAMKLYQEMVLHS-FKPDHALYEVMLRVLGKENREED---------VHKVVKDMEE 567

Query: 234 LFSAYNRVI-QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           L    ++VI   L K +  + +    +  +   C++D ++   ++  + + G   +A E+
Sbjct: 568 LCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDRENLLSILGSYGSSGRHLEAREL 627

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMG 351
            + + +          E +I  L K+ +L  A++ + + ++   F  SF ++ SL+    
Sbjct: 628 LDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCE 687

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR-PNF 410
           +      + +++ +M+  G  PS  +Y S++ +Y K G  +TA  L D+    G    + 
Sbjct: 688 ENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDV 747

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
            + T +IE++ K      A S+   + +   +     ++ L+  +A+SG  + A  ++N+
Sbjct: 748 SIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNT 807

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS 529
           M   G  P + +   L+  L     +D    ++ E++ MG+ +  S+  +++  +   G+
Sbjct: 808 MMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGN 867

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +    +  + M ++G      + R +     K       + ++     +  K DL ++ S
Sbjct: 868 IFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNS 927

Query: 590 VL 591
           VL
Sbjct: 928 VL 929



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/317 (19%), Positives = 132/317 (41%), Gaps = 2/317 (0%)

Query: 273  YNVLMTLFLNKGLPYKA-FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
            Y  ++  +   G P  A + I ++ EKG    D S +  +I +  K      A  L   +
Sbjct: 714  YRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSL 773

Query: 332  KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            +++       ++ +L+ +   +G  + +  ++  M   G  P+      L+++    G+L
Sbjct: 774  RQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRL 833

Query: 392  DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
            D    +  E++  GF+ +    T+++++ A +G +     I+  M+ AG+ PT   Y  +
Sbjct: 834  DELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIM 893

Query: 452  LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
            + + A   +V     + + M  A  +P LS + ++L L           ++   ++  G 
Sbjct: 894  IGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGL 953

Query: 512  SVDVSASDVL-MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
              D    + L ++Y +D   +  L  +  M   G+       + L  +  K  + E A+ 
Sbjct: 954  KPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEE 1013

Query: 571  LLETYVESAAKVDLVLY 587
            L E  +    K+D   Y
Sbjct: 1014 LFEGLLSKECKLDRSFY 1030



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/287 (16%), Positives = 127/287 (44%), Gaps = 3/287 (1%)

Query: 189  RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
            + + Y P    Y ++  +L + +    + ++  EM     K  +S+   +N V++     
Sbjct: 879  KAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSI---WNSVLKLYTGI 935

Query: 249  DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
               + +   ++ + ++  K D  +YN L+ ++     P +   +   M +        TY
Sbjct: 936  GDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTY 995

Query: 309  ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            + +I +  K   ++ A +LF+ +  +  +   + +  ++     +G    + K+   M+ 
Sbjct: 996  KSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKE 1055

Query: 369  CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
             G  P+      L+ SY+ +G+ + A ++ D +++ G   +   ++ +I+++ K+G  ++
Sbjct: 1056 AGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNV 1115

Query: 429  AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
            A+    +M++ G  P    ++C +   + S     A+ L  ++   G
Sbjct: 1116 AIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTG 1162


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 136/265 (51%), Gaps = 3/265 (1%)

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           K+E ++   +++ D DC  DT SY + +    + G   +A +++E+M +  C  D  TY 
Sbjct: 261 KVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYG 320

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           ++I +  K G + AA  + + M +   +P+  I+  ++D   K+ RL+ ++++Y  +   
Sbjct: 321 IIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKD 380

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEM--RIAGFRPNFGLFTMIIESHAKSGKLD 427
           G  PS   Y ++I +  K  K+D AL L  EM  R     P+   ++MII    K G  +
Sbjct: 381 GILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEE 440

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A  +  +M   G +P   TY+ L++  A +G+V  AM+L   M  AG+ P   TY  L+
Sbjct: 441 RAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLV 500

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYS 512
            +L  R  VD A  +L EM   G++
Sbjct: 501 QILC-RSDVDAAWDLLQEMMRNGHT 524



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 162/358 (45%), Gaps = 5/358 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D L+++   D    L D M+   ++       AY  ++  L K  +++ +    +
Sbjct: 179 YSSLIDGLSKAGRVDEARKLVDLMI---ARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQ 235

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++     +    +Y+ ++T ++  G   +AF + E M   +C+ D  +Y + I +L   G
Sbjct: 236 EMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIG 295

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R + A K+F+ M E+  +P  + +  ++D+  K G +  +  V   M     +P+  +Y 
Sbjct: 296 RREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYT 355

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER- 438
            +++ + K+ +L+ AL L+  +   G  P+   +  +I +  K  K+D A+ +  +M+R 
Sbjct: 356 MIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRR 415

Query: 439 -AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
                P+  TYS ++      G  + A  L   M   G+ P   TYT+L+  LA    V 
Sbjct: 416 KEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVS 475

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
            A ++L EM   G   D      L+  +    VD A   L+ M  +G   N F  + +
Sbjct: 476 RAMELLEEMLKAGIFPDDHTYGTLVQILCRSDVDAAWDLLQEMMRNGHTPNEFTFKAV 533



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 168/393 (42%), Gaps = 46/393 (11%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVI-QYLAKADKLEMSYCCFKKVLDSDCKI-- 268
           DF+ + +L  EM       GI+   A + VI   L     L+ +   F    +  C++  
Sbjct: 44  DFEVVNALLREM----KARGITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFE 99

Query: 269 -----DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
                D+ +Y  ++      G      E YE M   +C     TY +++  L K+ +++ 
Sbjct: 100 AIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVER 159

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A  +F+EM  +  +P    ++SL+D + KAGR+D + K+   M   G  P+A  Y S++ 
Sbjct: 160 ACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVA 219

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
              K G++  A++   EMR    RP    ++ I+  +   GK++ A ++  +M      P
Sbjct: 220 GLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAP 279

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              +Y+  +E   S G+ + A K++ +M   G +P + TY                    
Sbjct: 280 DTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTY-------------------- 319

Query: 504 LEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
                 G  +D         + K+GS+  A   LR M  + ++ N +I   + +  +K++
Sbjct: 320 ------GIIID--------NFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSS 365

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             E A  L +  ++       V Y +V+  L +
Sbjct: 366 RLEEALELYQRILKDGILPSTVTYNTVINALCK 398


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 158/355 (44%), Gaps = 40/355 (11%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           S   FRWA     +      Y  +  +L ++R F+ M+++  EM     K G     A+ 
Sbjct: 211 SYRFFRWATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEM----GKAGALSMDAFK 266

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
             I+  A A +++ +   F+ +  +      +S+N L+     +GL  +A ++++ M  G
Sbjct: 267 VAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMH-G 325

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
           + S D  +Y  ++ +   +  L  A +++ EM E+                         
Sbjct: 326 QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEK------------------------- 360

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
                     G  P   ++ ++IE   +  +   A+++++ M+  G  PN   +TM+I  
Sbjct: 361 ----------GMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRD 410

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           H K GK+D+AM  F +M+ A   P  +TY+CLL  + ++ Q+D    +   MT  G  P 
Sbjct: 411 HCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPD 470

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534
             TY AL+ LL  R + D AA+I  +M   G    +   +++M     G  ++A+
Sbjct: 471 ARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAM 525



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 120/290 (41%), Gaps = 6/290 (2%)

Query: 188 KRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247
           K    Y P    Y  L      +R+      +++EM+       + +   +N +I+ L +
Sbjct: 322 KMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVV---HNTMIEGLLR 378

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
             +   +   F+ +       +  +Y +L+     +G    A E +E M++ +C  D +T
Sbjct: 379 GQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVAT 438

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  ++     + ++D    + +EM ++   P    + +L+  +      D + ++Y +M 
Sbjct: 439 YTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMI 498

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTAL--RLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
             G  P+   Y  +++SY   G  + A+   +W+EM   G  P+   +T+ I  H + G+
Sbjct: 499 KKGLEPTIHTYNMMMKSYF-VGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINGHIRHGR 557

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
            + A     +M   G       Y+      + +G+ D   +L   +  AG
Sbjct: 558 PEEAYKYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFELAQKVKFAG 607



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 93/207 (44%), Gaps = 3/207 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I+   K  K++M+  CF+++ ++ C+ D  +Y  L+  + N     +   + E M 
Sbjct: 404 YTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMT 463

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  D  TY  +I  L      D A +++++M ++   P+ + +  ++ S    G  +
Sbjct: 464 QKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSY-FVGDSN 522

Query: 358 TSM--KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +M   V+ EM   G  P    Y   I  + + G+ + A +  +EM   G +     +  
Sbjct: 523 YAMGCAVWEEMHQRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMKAPQIDYNK 582

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFL 442
                +K+GK DI   +   ++ AG L
Sbjct: 583 FAADFSKAGKPDILFELAQKVKFAGKL 609


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 151/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + R F  +   ++E++       +  F   N
Sbjct: 80  AIECYRLTREHKLWVPFDTCRKVL-EHLMKLRYFKLVWGFYEEILECGYPASLYFF---N 135

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 136 ILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRAS 195

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K   +D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 196 GVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLA 255

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +L+    K G L+ A  L DEM   G +P+   +T +I+ 
Sbjct: 256 MEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDG 315

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 316 CCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPD 375

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 376 TGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLM 418



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 162/386 (41%), Gaps = 3/386 (0%)

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC--KIDTQSYNVLMTLFLNKGLPYKAF 290
            +FS    +IQ +        +   F  +L++    + D   ++ L+T +L  G    A 
Sbjct: 22  QMFSEAKSLIQVVVSRKGKGSAXAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAI 81

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           E Y    + +  +   T   ++  L K          ++E+ E  +  S   F  L+   
Sbjct: 82  ECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRF 141

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K G +  +  V+  +   G RPS   Y +L+  Y + G LD   RL   MR +G +P+ 
Sbjct: 142 CKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDV 201

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             ++++I    K   +D A  +F +M   G +P   T++ L++ H  +G+VD AM++Y  
Sbjct: 202 YTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQ 261

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGS 529
           M S  L P J TY  L+  L K+  ++ A  ++ EM   G   D  + + ++    K+G 
Sbjct: 262 MLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGD 321

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +D A    + M    IR ++     L     +      A+ +L   +    K D   YT 
Sbjct: 322 LDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTM 381

Query: 590 VLAHLVRCQDEQNERHLMAILSATKH 615
           ++    +  D      L+  +    H
Sbjct: 382 IINEFCKKGDVWKGSKLLKEMQRNGH 407


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/441 (22%), Positives = 193/441 (43%), Gaps = 21/441 (4%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           +V    A      +D +L  F  A       PG   Y  L D L        ++ ++D M
Sbjct: 89  LVAAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNM 148

Query: 224 VHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDS----DCKIDTQSYNVLMT 278
                K G+      YN +I+ L + D+++ +    +K+LD      C  D  S+  +++
Sbjct: 149 ----RKAGVDPNVYTYNLLIRALCQNDRVDAA----RKMLDEMSRKGCHPDEVSHGTIVS 200

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
                G   +A          +     ++Y  ++ +L    R+     +  EM +R  +P
Sbjct: 201 GMCKLGRVEEARGFLAETVPVQ-----ASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQP 255

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +   + ++VD+  KA  L  +  +   M   G  P+   + +L++ + + GK+  AL +W
Sbjct: 256 NVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMW 315

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M   G+ P+   + ++I      G L  A+  F  M+R   LP  +TYS L++  +++
Sbjct: 316 HWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNA 375

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G +D AM ++N M S+G +P +  YT ++ +L K+ + D A  ++ +M       +    
Sbjct: 376 GDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTF 435

Query: 519 DVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           + L+  + D G V  AL     M  +G   N+    +L     +   ++ A  ++   + 
Sbjct: 436 NTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLN 495

Query: 578 SAAKVDLVLYTSVLAHLVRCQ 598
           +  ++ LV Y +V+  L  CQ
Sbjct: 496 NGFELSLVTYNTVINCL--CQ 514



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 137/319 (42%), Gaps = 4/319 (1%)

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           + S+ +EMV    +  +     Y  ++    KA +L M+     +++   C  +  ++  
Sbjct: 241 VFSVVNEMVQRGLQPNVV---TYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTA 297

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+  F   G  + A  ++  M     +    +Y ++I  L   G L  A+  F  MK   
Sbjct: 298 LVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNA 357

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P+   +++LVD    AG LD +M ++ EM+  G +P+  +Y ++I+   K    D A 
Sbjct: 358 LLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAE 417

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            L D+M +    PN   F  +I      G++  A+++F  M R G  P   TY+ LL   
Sbjct: 418 SLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGL 477

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
              G    A  +   M + G    L TY  ++  L +  +   A  +L  M   G   D 
Sbjct: 478 FREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDA 537

Query: 516 -SASDVLMVYIKDGSVDHA 533
            + + ++  Y K+G V  A
Sbjct: 538 FTFNAIIHAYCKEGKVSIA 556



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 160/366 (43%), Gaps = 12/366 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  + D   ++R+     ++   MV       +  F+A   +++   +  K+  +   + 
Sbjct: 260 YTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTA---LVKGFFEDGKVHDALSMWH 316

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++D      T SYNVL+      G    A + + SM++     + +TY  ++   + +G
Sbjct: 317 WMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAG 376

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY--MEMQGCGHRPSAPM 377
            LD A+ ++ EMK    +P+  ++ +++D + K    D +  +   M M  C   P+   
Sbjct: 377 DLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNC--PPNTVT 434

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           + +LI      G++  AL ++  MR  G  PN   +  ++    + G    A ++  +M 
Sbjct: 435 FNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEML 494

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             GF  +  TY+ ++           AM L   M   G++P   T+ A++    K   V 
Sbjct: 495 NNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVS 554

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTN----NFIV 552
           +AA +L +M  +    +V A  +L+  +   G + +A+ +L  M   GI  N    N +V
Sbjct: 555 IAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLV 614

Query: 553 RQLFES 558
           R +F +
Sbjct: 615 RAIFTN 620



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 129/309 (41%), Gaps = 48/309 (15%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           +E  +  LA +G +D      QEM+ R    + +   + + +  +AG  D ++K +    
Sbjct: 54  HEATVRRLAAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRAS 113

Query: 368 GCGHR-PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
             G R P   +Y  L+++  +   +   + ++D MR AG  PN   + ++I +  ++ ++
Sbjct: 114 DLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRV 173

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA---------------------- 464
           D A  +  +M R G  P   ++  ++      G+V+ A                      
Sbjct: 174 DAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALC 233

Query: 465 --------MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV- 515
                     + N M   GL+P + TYT ++    K + + +A  IL  M +MG + +V 
Sbjct: 234 GEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVL 293

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSG----IRTNNFIVRQL------------FESC 559
           + + ++  + +DG V  AL    +M   G      + N ++R L            F S 
Sbjct: 294 TFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSM 353

Query: 560 MKNALYESA 568
            +NAL  +A
Sbjct: 354 KRNALLPNA 362


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTREHKLWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A  LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G++  V   +VLM
Sbjct: 387 TGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 429



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 143/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTF 250

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSM 310

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D  + + ++    K+G +D A    + M    IR ++     L     +      
Sbjct: 311 KGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 371 AEKMLREMLSVGLKPDTGTYTMIVNEFCKKGD 402



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 138/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 166

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 226

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D +  ++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 227 KMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYN 286

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +D+A +    M   
Sbjct: 287 TLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQE 346

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   D     +++  + K G V   
Sbjct: 347 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKG 406

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 407 SKLLKEMQRDG 417



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 142/319 (44%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  +E      F+    +++ + K     
Sbjct: 65  KGNQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFK 124

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A  L++ M   GL 
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLV 244

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +     D+   + L+  + K G +  A   
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 304

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ + F    L + C K    ++A    +  ++   ++D V YT++++ L  
Sbjct: 305 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL-- 362

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 363 CQEGRSVDAEKMLREMLSV 381



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 122/289 (42%), Gaps = 40/289 (13%)

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLD 392
           N R    +F+ L+ +  ++G L  +++ Y   +   H+   P      ++E   K     
Sbjct: 67  NQRSDIYVFSGLITAYLESGFLRDAIECYRLTRE--HKLWVPFDTCRKVLEHLMKLKYFK 124

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
                ++E+   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +   G +D   +L ++M ++G++P + TY+ L+  L K   +D A  +  EM   G  
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLV 244

Query: 513 VD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            + V+ + ++  + K+G VD A+                I +Q+        L +S  P 
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAME---------------IYKQM--------LSQSLLP- 280

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF 620
                      DL+ Y +++  L +  D +    L+  +S    K   F
Sbjct: 281 -----------DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 318


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 192/429 (44%), Gaps = 46/429 (10%)

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
           ALK   + D  +  F      + +    +   ++ DVL    + +    L DEMV     
Sbjct: 189 ALKRCGEVDFCVRFFHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMV----G 244

Query: 230 NGI---SLFSAYNRVIQ-YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
            GI   ++F+ YN ++  Y+ + D+  +     K +          +Y++L+  + + G 
Sbjct: 245 KGIVKPNVFT-YNTLLNAYVGRKDRKGVDEI-LKLMEKEQVVFSVATYSILIQWYSSSGD 302

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +A +I+E M +    +D   Y  MI    + G +  A  LF EM +R+  P+ + + +
Sbjct: 303 IEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGA 362

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL-------- 397
           L+  + KAG+++ +  + +EMQ  G   +  ++ + ++ Y + GK+D ALRL        
Sbjct: 363 LIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKG 422

Query: 398 --------------------WDEMRI-------AGFRPNFGLFTMIIESHAKSGKLDIAM 430
                               +DE +         G +PN   FTM IE + K G L  A 
Sbjct: 423 INADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAE 482

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +F DME+ G +P   TY+ L++ +    +V  A K+ + M + GL P L TY++L+   
Sbjct: 483 RLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGE 542

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
                VD A K+  EM+  G + +V+    ++  + K+G  D A +    M   G+  ++
Sbjct: 543 CIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDD 602

Query: 550 FIVRQLFES 558
            +   L  S
Sbjct: 603 RVFTSLVGS 611


>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 780

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 119/522 (22%), Positives = 226/522 (43%), Gaps = 65/522 (12%)

Query: 57  QNFVKDAI-FFRKPNYV-RSYCSGKSGDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEP 114
           Q F +  I F+ KP+++ RSY SG +                + SG VI      + +EP
Sbjct: 4   QMFFRSVIQFYSKPSWMQRSYSSGNA--------------EFNISGEVISILAKKKPIEP 49

Query: 115 GFDDHVMVGGIKKPFLNASAVAKIV-EVVNRWKWGPELETQLDKLQFVPKMVHITQALKV 173
             +  V       PFL+ + +  ++ E VNR            +L F             
Sbjct: 50  ALEPLV-------PFLSKNIITSVIKEEVNR------------QLGF------------- 77

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
                     F WA R+     G E + ++ D+L+E    D    L+ + + +    G+S
Sbjct: 78  --------RFFIWASRRERLRSG-ESFGLVIDMLSEDNGCD----LYWQTLEELKSGGVS 124

Query: 234 LFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-AFE 291
           + S  +  +I   AK    E +   F ++ + DC+ D  +YNV++ + + + + +  AF 
Sbjct: 125 VDSYCFCVLISAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMREDVFFMLAFA 184

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +Y  M K  CS +  T+ +++  L K GR   A K+F +M  R   P+   +  L+  + 
Sbjct: 185 VYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLC 244

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           + G  + + K++ EM+  G+ P +  + +L++ + K G++  A  L       GF     
Sbjct: 245 QRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLR 304

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            ++ +I+   ++ +   A  ++ +M +    P    Y+ L++  + +G+++ A+KL  SM
Sbjct: 305 GYSSLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSM 364

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSV 530
            S G+ P    Y A++  L  R L++    + LEM       D     +L+  + ++G V
Sbjct: 365 PSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLV 424

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
             A      +  SG   +      L +   K+   + A+ LL
Sbjct: 425 RKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLL 466



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 160/349 (45%), Gaps = 8/349 (2%)

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVL 262
           F +L +     G  S   +M  D +  GIS     Y  +I  L +    E +   F ++ 
Sbjct: 201 FGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARKLFYEMK 260

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
            S    D+ ++N L+  F   G   +AFE+    EK    L    Y  +I  L ++ R  
Sbjct: 261 ASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYT 320

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A +L+  M +RN +P   ++  L+  + KAG+++ ++K+   M   G  P    Y ++I
Sbjct: 321 QAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCYNAVI 380

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           ++    G L+    L  EM      P+    T++I S  ++G +  A  IF ++E++G  
Sbjct: 381 KALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIEKSGCS 440

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSM-----TSAGLRPGLSTYTALLTLLAKRKLVD 497
           P+ +T++ L++    SG++  A  L + M      S  LR   S   +  T++    ++ 
Sbjct: 441 PSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLAHSGNRSFDTMVQSGSILK 500

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI 545
            A K L      G S D+ + +VL+  + ++G +D AL+ L  +   G+
Sbjct: 501 -AYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQLKGL 548



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 163/353 (46%), Gaps = 17/353 (4%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           +V G   Y  L D L  +R +     L+  M+  + K  I L   Y  +IQ L+KA K+E
Sbjct: 299 FVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPDIIL---YTILIQGLSKAGKIE 355

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +    + +       DT  YN ++     +GL  +   +   M + E   D  T+ ++I
Sbjct: 356 DALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILI 415

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            S+ ++G +  A ++F E+++    PS   F +L+D + K+G L  +  +  +M+    R
Sbjct: 416 CSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEV--GR 473

Query: 373 PSAPMYVSL-------IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           P A +++ L        ++  ++G +  A +        G  P+   + ++I    + G 
Sbjct: 474 P-ASLFLRLAHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGD 532

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           +D A+ +   ++  G  P   TY+ L+      G+ + A KL+ +      R   + Y +
Sbjct: 533 IDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDD--FRHSPAVYRS 590

Query: 486 LLTLLAKRKLVDVAAKILLE-MKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537
           L+T   +R+ + VA  + ++ +K +    D +A+++   + K+G  + ALR L
Sbjct: 591 LMTWSCRRRKLLVAFNLWMKYLKKISCLDDETANEIEQCF-KEGETERALRRL 642



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 125/281 (44%), Gaps = 12/281 (4%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           NR    + ++  +  +Y       D+    D  SYNVL+  F  +G    A ++   ++ 
Sbjct: 486 NRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQL 545

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              S D  TY  +I  L + GR + A KLF    + +FR S  ++ SL+    +  +L  
Sbjct: 546 KGLSPDSVTYNTLINGLHRVGREEEAFKLF--YAKDDFRHSPAVYRSLMTWSCRRRKLLV 603

Query: 359 SMKV---YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  +   Y++   C    +A    + IE   K G+ + ALR   E+         G +T+
Sbjct: 604 AFNLWMKYLKKISCLDDETA----NEIEQCFKEGETERALRRLIELDTRKDELTLGPYTI 659

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK--LYNSMTS 473
            +    +SG+   A+ +F+ +     L TP +   L+       Q+D+A+   LY    +
Sbjct: 660 WLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHGLCKREQLDAAIDVFLYTLDNN 719

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
             L P +  Y  L +LL  R+ +++ +++   M+  GY VD
Sbjct: 720 FKLMPRVCNYL-LSSLLQSREKMEIVSQLTNRMERAGYDVD 759


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 178/402 (44%), Gaps = 4/402 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L     +    D  + + DEM   ++K  +     Y  +I  L +  K+E +
Sbjct: 232 PSTRTYTVLIKAKCDIGMTDKAMKMLDEM---ATKACVPNVHTYTILIDRLCREGKIEEA 288

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F+K+L         ++N L+  +  +G    AF++   MEKG C  +  TY  ++  
Sbjct: 289 NGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEG 348

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L +  +   A  L + + +    P    +  LVD   K G+L+ +  ++  M   G  P 
Sbjct: 349 LCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 408

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              + +LI+   K G+L+ A  +   M   G   +   FT +I+ H K GK      +F 
Sbjct: 409 GFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFE 468

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M     L T  T++C L+      +++ A  +   M   GL P + T+T L+    +  
Sbjct: 469 NMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG 528

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
              ++ K+L  MK  G S +V    +++  +  +G V+ A   L  M S G+  N+F   
Sbjct: 529 ETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYA 588

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L ++ +K    + A  ++ T V++  + +  +Y+++L+  V
Sbjct: 589 VLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFV 630



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 203/461 (44%), Gaps = 51/461 (11%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +++ L +  K   ++   ++V+D+    D  +YN+L+  F  +G    AF I+ SM
Sbjct: 341 TYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSM 400

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAA-------IK----------------------- 326
                  DG T+  +I  L K GRL+ A       +K                       
Sbjct: 401 NSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKA 460

Query: 327 -----LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
                LF+ M E     + + F   +D++GK  +L+ +  +  +M   G  PS   +  L
Sbjct: 461 KDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTIL 520

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           IE + +AG+   +L++ + M+ AG  PN   +T+II     +G+++ A +I   M   G 
Sbjct: 521 IEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGV 580

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT--LLAKRKLVDVA 499
            P   TY+ L++ H  +G++D A ++ ++M   G +P    Y+ALL+  +L+   +   A
Sbjct: 581 SPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARA 640

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTN---NFIVRQL 555
                ++     S + + ++ L  ++ +   VDHAL+    +   G+ T    NF+V  L
Sbjct: 641 LSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGL 700

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
              C +  + E A  L +  V+     D  + +S++ H  +     N    M ++   K 
Sbjct: 701 ---CKEGRIIE-ADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKF 755

Query: 616 -KAHAFLCGLFTG--PEQRKQPVLSFVREFFH--GIDYELE 651
             + A  C +  G   E R Q     V +     GI+ E+E
Sbjct: 756 VPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVE 796



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 139/315 (44%), Gaps = 40/315 (12%)

Query: 238 YNRVIQYLAKADKLEMS--YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           Y  V+  L K   ++ +  +CC  KVL     +DT     L+     +    +AF ++E 
Sbjct: 131 YRTVVNALCKNGFVQAAEMFCC--KVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEK 188

Query: 296 MEKGE-CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           M K E C  +  TY ++I  L ++GRL+ A +L QEM E+  +PS   +  L+ +    G
Sbjct: 189 MSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIG 248

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
             D +MK+  EM      P+   Y  LI+   + GK++ A  ++ +M   G  P    F 
Sbjct: 249 MTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFN 308

Query: 415 MIIESHAKSGKLDIAMSIFTDMERA----------------------------------- 439
            +I  + K G +  A  + + ME+                                    
Sbjct: 309 ALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDN 368

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G LP   TY+ L++     GQ++ A  ++NSM SAGL P   T+TAL+  L K   ++ A
Sbjct: 369 GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQA 428

Query: 500 AKILLEMKTMGYSVD 514
             IL  M   G S+D
Sbjct: 429 NGILGSMVKKGISLD 443



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 186/460 (40%), Gaps = 66/460 (14%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM----LSLFDEMVHDSSKN 230
           N+ +  +  F+W  RQS Y    +  + L  VL  SRD  G+    + L  +   DS   
Sbjct: 15  NNVELGVRFFKWVCRQSSYCYDLDGRIQLLGVL-VSRDLFGVAQKAVVLLIQECEDSENG 73

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
            + L  A + + +         +SY C               Y+ L+       + + AF
Sbjct: 74  VVKLMGALDGMTEL-----GFRLSYPC---------------YSTLLMCLAKLNMGFVAF 113

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            +Y  M      L G  Y  ++ +L K+G + AA     ++    F    ++  SLV + 
Sbjct: 114 LVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLAN 173

Query: 351 GKAGRLDTSMKVYMEM---QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
            +   L  + +V+ +M   + C  RP++  Y  LI    +AG+L+ A +L  EM   G +
Sbjct: 174 CRRDDLGEAFRVFEKMSKEESC--RPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQ 231

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+   +T++I++    G  D AM +  +M     +P   TY+ L++     G+++ A  +
Sbjct: 232 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 291

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV---- 523
           +  M   GL PG+ T+ AL+    K   V  A ++L  M+      ++   + LM     
Sbjct: 292 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 351

Query: 524 --------------------------------YIKDGSVDHALRWLRFMGSSGIRTNNFI 551
                                           + K+G ++ A      M S+G+  + F 
Sbjct: 352 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 411

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              L +   K    E A  +L + V+    +D V +T+++
Sbjct: 412 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALI 451


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 197/449 (43%), Gaps = 8/449 (1%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN-GISL-FSAYN 239
           +L +  + +  + P    Y +  + L E    D  L L  EM+H    N GI L  S +N
Sbjct: 108 NLLKILENELGFKPDTNFYNIALNALVE----DNKLKLV-EMLHSKMVNEGIVLDVSTFN 162

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I+ L KA +L  +    +++ +   K D  ++  LM  F+ +G    A ++ + M   
Sbjct: 163 VLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGY 222

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
            C L   + ++++    K GR++ A++   E+ E  F P    F SLV+   + G ++ +
Sbjct: 223 GCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDA 282

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           + +   M   G  P    Y SLI    K G+ + A+ +  +M +    PN   +  +I +
Sbjct: 283 LDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISA 342

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K  +++ A  +   +   G LP   T++ L++    S   D AM+++  M + G +P 
Sbjct: 343 LCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPD 402

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
             TY+ L+  L   + +  A  +L EM++ G + +    + L+  + K   ++ A     
Sbjct: 403 EFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFD 462

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
            M   G+  ++     L +   KN   E A  L++  +    K D   Y S+L +  R  
Sbjct: 463 QMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVG 522

Query: 599 DEQNERHLMAILSATKHKAHAFLCGLFTG 627
           D +    ++  +++   +   F  G   G
Sbjct: 523 DIEKAGDIVQTMASNGCEPDIFTYGTLIG 551



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 140/293 (47%), Gaps = 5/293 (1%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN L++     G   KA EI + M   ECS +  TY  +I +L K   ++AA  L 
Sbjct: 297 DVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLA 356

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           + +  +   P    F +L+  +  +   D +M+++ EM+  G +P    Y  LI+S    
Sbjct: 357 RILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYE 416

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            +L  AL L  EM  +G   N  ++  +I+   KS +++ A  IF  ME  G   +  TY
Sbjct: 417 RRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTY 476

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++    + +V+ A +L + M   GL+P   TY +LLT   +   ++ A  I+  M +
Sbjct: 477 NTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMAS 536

Query: 509 MGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGI----RTNNFIVRQLF 556
            G   D+     L+  + + G VD A + LR +   GI       N +++ LF
Sbjct: 537 NGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALF 589



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 180/409 (44%), Gaps = 20/409 (4%)

Query: 212 DFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
           +F+  + +  +M+  + S N ++    YN +I  L K +++E +    + ++      D 
Sbjct: 313 EFEKAIEILQQMILRECSPNTVT----YNTLISALCKENEIEAATDLARILVSKGLLPDV 368

Query: 271 QSYNVLMT-LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
            ++N L+  L L+K     A E++E M+   C  D  TY ++I SL    RL  A+ L +
Sbjct: 369 CTFNTLIQGLCLSKNQDI-AMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLK 427

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
           EM+      +  ++ +L+D + K+ R++ + +++ +M+  G   S+  Y +LI+   K  
Sbjct: 428 EMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNK 487

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           +++ A +L D+M + G +P+   +  ++    + G ++ A  I   M   G  P   TY 
Sbjct: 488 RVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYG 547

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+     +G+VD A KL  S+   G+      Y  ++  L  RK      ++  EM   
Sbjct: 548 TLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEK 607

Query: 510 GYSVDVSASDVLMVYIKDGS--VDHALRWLRFMGSSGIRTN----NFIVRQLFESCMKNA 563
               D     ++   + +G   +  A+ +   M   GI        F+   L    M++ 
Sbjct: 608 SDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDT 667

Query: 564 LYESAKPLLETYVESAAKVDLVL-------YTSVLAHLVRCQDEQNERH 605
           L E    ++E    S  +  ++        +   LA+L    D QN + 
Sbjct: 668 LIELINMVMEKAQMSERETSMIRGFLKIRKFNDALANLGGILDRQNPKR 716


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 151/324 (46%), Gaps = 1/324 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   YN+LM  +  + L       Y  + +  C     TY L++ +  KSG L+ A  +F
Sbjct: 154 DVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSGLLEKAEAVF 213

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM++    PS  ++ + +D + K G    +++++  M+  G +P+   Y  LI  Y K 
Sbjct: 214 AEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKE 273

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            K   A  ++DEMR    +PN   FT ++ + A+ G  + A  IF  M+ AG+ P    Y
Sbjct: 274 SKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAY 333

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+E ++ +G    A ++++ M   G  P  ++Y  ++    +  L + A  +  EMK 
Sbjct: 334 NALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKR 393

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
           +G +  + +  +L+  Y   G+V      +  M  SG++ + F++  +     +   +  
Sbjct: 394 IGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGK 453

Query: 568 AKPLLETYVESAAKVDLVLYTSVL 591
            + L  T  +   + D+  Y  ++
Sbjct: 454 MEDLFSTMQKGPCRADISTYNILI 477



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/402 (20%), Positives = 177/402 (44%), Gaps = 4/402 (0%)

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
           +  W   +S + P    Y +L D   +   +  + S + E++       I     Y  ++
Sbjct: 141 ICEWIMNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHC---IPTEDTYALLL 197

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
           +   K+  LE +   F ++           YN  +   +  G   KA EI+  M++  C 
Sbjct: 198 KAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQ 257

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
               TY ++I    K  +   A  +F EM+ +  +P+   F +LV+++ + G  + + ++
Sbjct: 258 PTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEI 317

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           + +MQ  G+ P    Y +L+ESY++AG    A  ++  M+  G  P+   + ++++++ +
Sbjct: 318 FEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGR 377

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           +G  + A ++F +M+R G  PT  ++  LL  ++S+G V     +   M  +GL+P    
Sbjct: 378 AGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFV 437

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMG 541
             ++L L  +         +   M+      D+S  ++L+ VY + G V+      + + 
Sbjct: 438 MNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLP 497

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           +  +  +         +  +  LY+    L E  +++    D
Sbjct: 498 AKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPD 539



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 141/302 (46%), Gaps = 1/302 (0%)

Query: 222 EMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           E+ H   ++G       Y  +I    K  K  M+   F ++    CK +  ++  L+   
Sbjct: 246 EIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNAL 305

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
             +GL  KA EI+E M++     D   Y  ++ S +++G    A ++F  M+     P  
Sbjct: 306 AREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDR 365

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             +  +VD+ G+AG  + +  V+ EM+  G  P+   ++ L+ +Y+ AG +     +  +
Sbjct: 366 ASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQ 425

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M  +G +P+  +   ++  + + G+      +F+ M++       STY+ L+ ++  +G 
Sbjct: 426 MHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGF 485

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           V+   +L+  + +  L P + T+T+ +   +++KL     ++  +M   G   D   + V
Sbjct: 486 VERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKV 545

Query: 521 LM 522
           L+
Sbjct: 546 LL 547



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 142/327 (43%), Gaps = 4/327 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++ +F   KR     P  + Y ML +V  +        ++FDEM     K  I  F+A  
Sbjct: 244 AVEIFHRMKRDGCQ-PTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTA-- 300

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++  LA+    E +   F+++ ++  + D  +YN LM  +   G PY A EI+  M+  
Sbjct: 301 -LVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHM 359

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
            C  D ++Y +M+ +  ++G  + A  +F+EMK     P+      L+ +   AG +   
Sbjct: 360 GCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKC 419

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             +  +M   G +P   +  S++  Y + G+      L+  M+    R +   + ++I  
Sbjct: 420 EDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINV 479

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + ++G ++    +F  +      P   T++  +  ++        ++L+  M  AG  P 
Sbjct: 480 YGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPD 539

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEM 506
             T   LL+  +  + ++    ++  M
Sbjct: 540 GGTAKVLLSACSSEEQIEQVTNVVRTM 566


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 169/364 (46%), Gaps = 10/364 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  V+  L K+    ++   F+K+ + + K     Y++++      G    A  ++  M
Sbjct: 241 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 300

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      D  TY  +I  L   G+ D   K+ +EM  RN  P    F++L+D   K G+L
Sbjct: 301 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 360

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++Y EM   G  P    Y SLI+ + K   L  A +++D M   G  P+   ++++
Sbjct: 361 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 420

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I S+ K+ ++D  M +F ++   G +P   TY+ L+     SG++++A +L+  M S G+
Sbjct: 421 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 480

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALR 535
            P + TY  LL  L     ++ A +I  +M+    ++ +   ++++  + + S VD A  
Sbjct: 481 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 540

Query: 536 WLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               +   G++    T N ++  L   C K +L E A  L     E     D   Y  ++
Sbjct: 541 LFCSLSDKGVKPDVVTYNVMIGGL---CKKGSLSE-ADMLFRKMKEDGCTPDDFTYNILI 596

Query: 592 -AHL 594
            AHL
Sbjct: 597 RAHL 600



 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 180/369 (48%), Gaps = 8/369 (2%)

Query: 154 QLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213
           Q D++ + P +  + ++     +S  +L LFR  + ++      + Y ++ D L +   F
Sbjct: 236 QPDEVTYGPVLNRLCKS----GNSALALDLFRKMEERNIKASVVQ-YSIVIDSLCKDGSF 290

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           D  LSLF+EM     K  +  +S+   +I  L    K +      ++++  +   D  ++
Sbjct: 291 DDALSLFNEMEMKGIKADVVTYSS---LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 347

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + L+ +F+ +G   +A E+Y  M     + D  TY  +I    K   L  A ++F  M  
Sbjct: 348 SALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 407

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           +   P    ++ L++S  KA R+D  M+++ E+   G  P+   Y +L+  + ++GKL+ 
Sbjct: 408 KGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA 467

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  L+ EM   G  P+   + ++++    +G+L+ A+ IF  M+++        Y+ ++ 
Sbjct: 468 AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIH 527

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
              ++ +VD A  L+ S++  G++P + TY  ++  L K+  +  A  +  +MK  G + 
Sbjct: 528 GMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 587

Query: 514 DVSASDVLM 522
           D    ++L+
Sbjct: 588 DDFTYNILI 596



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 146/333 (43%), Gaps = 9/333 (2%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y  ++      G    A +++  ME+         Y ++I SL K G  D A+ LF
Sbjct: 238 DEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF 297

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM+ +  +     ++SL+  +   G+ D   K+  EM G    P    + +LI+ + K 
Sbjct: 298 NEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKE 357

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           GKL  A  L++EM   G  P+   +  +I+   K   L  A  +F  M   G  P   TY
Sbjct: 358 GKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTY 417

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S L+  +  + +VD  M+L+  ++S GL P   TY  L+    +   ++ A ++  EM +
Sbjct: 418 SILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS 477

Query: 509 MGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSS----GIRTNNFIVRQLFESCMKNA 563
            G    V    +L+  + D G ++ AL     M  S    GI   N I+  +  +    +
Sbjct: 478 RGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA----S 533

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             + A  L  +  +   K D+V Y  ++  L +
Sbjct: 534 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCK 566



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 146/327 (44%), Gaps = 1/327 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           DT +++ L+  F  +G   +A  + + M + +   D  T   +I  L   GR+  A+ L 
Sbjct: 168 DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLI 227

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             M E  F+P    +  +++ + K+G    ++ ++ +M+    + S   Y  +I+S  K 
Sbjct: 228 DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKD 287

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G  D AL L++EM + G + +   ++ +I      GK D    +  +M     +P   T+
Sbjct: 288 GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 347

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S L+++    G++  A +LYN M + G+ P   TY +L+    K   +  A ++   M +
Sbjct: 348 SALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 407

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D+    +L+  Y K   VD  +R  R + S G+  N      L     ++    +
Sbjct: 408 KGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA 467

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHL 594
           AK L +  V       +V Y  +L  L
Sbjct: 468 AKELFQEMVSRGVPPSVVTYGILLDGL 494



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 116/259 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    K + L  +   F  ++   C+ D  +Y++L+  +           ++  +
Sbjct: 381 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 440

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  +  TY  ++    +SG+L+AA +LFQEM  R   PS   +  L+D +   G L
Sbjct: 441 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 500

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +++++ +MQ         +Y  +I     A K+D A  L+  +   G +P+   + ++
Sbjct: 501 NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM 560

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K G L  A  +F  M+  G  P   TY+ L+  H     + S+++L   M   G 
Sbjct: 561 IGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGF 620

Query: 477 RPGLSTYTALLTLLAKRKL 495
               ST   ++ +L+ R+L
Sbjct: 621 SADSSTIKMVIDMLSDRRL 639


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTREHKLWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM   G++  V   +VLM
Sbjct: 387 TGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLM 429



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 143/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTF 250

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSM 310

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D  + + ++    K+G +D A    + M    IR ++     L     +      
Sbjct: 311 KGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 371 AEKMLREMLSVGLKPDTGTYTMIINEFCKKGD 402



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 139/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 166

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 226

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 227 KMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYN 286

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +D+A +    M   
Sbjct: 287 TLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQE 346

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   D     +++  + K G V   
Sbjct: 347 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKG 406

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 407 SKLLKEMHRDG 417



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 143/319 (44%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  +E      F+    +++ + K     
Sbjct: 65  KGNQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFK 124

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLV 244

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +     D+   + L+  + K G +  A   
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 304

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ + F    L + C K    ++A    +  ++   ++D V YT++++ L  
Sbjct: 305 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL-- 362

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 363 CQEGRSVDAEKMLREMLSV 381



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 123/289 (42%), Gaps = 40/289 (13%)

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLD 392
           N R    +F+ L+ +  ++G L  +++ Y   +   H+   P      ++E   K     
Sbjct: 67  NQRSDIYVFSGLITAYLESGFLRDAIECYRLTRE--HKLWVPFDTCRKVLEHLMKLKYFK 124

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
                ++E+   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +   G +D   +L ++M ++G++P + TY+ L+  L K   +D A ++  EM   G  
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLV 244

Query: 513 VD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            + V+ + ++  + K+G VD A+                I +Q+        L +S  P 
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAME---------------IYKQM--------LSQSLLP- 280

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF 620
                      DL+ Y +++  L +  D +    L+  +S    K   F
Sbjct: 281 -----------DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 318


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/475 (21%), Positives = 203/475 (42%), Gaps = 19/475 (4%)

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           +LF+ +  V++ L   ++++ +    + +    C  ++  Y  L+          +A ++
Sbjct: 210 TLFT-FGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQL 268

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            E M    C  D  T+  +I  L K  R++ A K+   M  R F P    +  L++ + K
Sbjct: 269 LEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCK 328

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA-GFRPNFG 411
            GR+D +  ++  +     +P++ ++ +LI  +   G+LD A  +  +M  + G  P+  
Sbjct: 329 IGRVDAAKDLFYRIP----KPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVC 384

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +  +I  + K G + +A+ +  DM   G  P   +Y+ L++     G++D A  L N M
Sbjct: 385 TYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEM 444

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSV 530
           ++ GL+P    +  L++   K   +  A +I  EM   G   DV   + L+  + +   +
Sbjct: 445 SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEI 504

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
            HAL  LR M S G+  N      L  + ++    + A+ L+   V   + +D + Y S+
Sbjct: 505 KHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSL 564

Query: 591 LAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRK---QPVLSFVREFFHGID 647
           +  L R  +    R L   +        +  C +      R    +  + F +E      
Sbjct: 565 IKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEM----- 619

Query: 648 YELEEGAARYFV--NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAW 700
             +  G+    V  N L+N L   G+I     +++      + P  + ++  ++W
Sbjct: 620 --VLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSW 672



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/433 (22%), Positives = 178/433 (41%), Gaps = 20/433 (4%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           P+ ET  D +  + K   I +A K++N         R   R   + P D  Y  L + L 
Sbjct: 279 PDAETFNDVILGLCKFDRINEAAKMVN---------RMLIRG--FTPDDITYGYLMNGLC 327

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           +    D    LF  +   +S         +N +I       +L+ +      ++ S   +
Sbjct: 328 KIGRVDAAKDLFYRIPKPTS-------VIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV 380

Query: 269 -DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            D  +YN L+  +  KGL   A E+   M    C  +  +Y +++    K G++D A  L
Sbjct: 381 PDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNL 440

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             EM     +P+   F  L+ +  K  R+  +++++ EM   G +P    + SLI    +
Sbjct: 441 LNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 500

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
             ++  AL L  +M   G   N   +  +I +  + G++  A  +  +M   G L    T
Sbjct: 501 VDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEIT 560

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L++    +G+VD A  L+  M   GL P   +   L+  L +  +V+ A +   EM 
Sbjct: 561 YNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMV 620

Query: 508 TMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G + D+   + L+  + + G ++  L   R + + GI  +      L     K     
Sbjct: 621 LRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVY 680

Query: 567 SAKPLLETYVESA 579
            A  LL+  +E  
Sbjct: 681 DACLLLDEGIEDG 693



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 113/566 (19%), Positives = 222/566 (39%), Gaps = 84/566 (14%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
            + + L++  D  TS+ LF W   Q  Y    + Y +L   L  + +F  +  L  +M  
Sbjct: 74  QLCKLLELPLDVSTSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKD 133

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS----DCKIDTQSYNVLMTLFL 281
           +      SLF      I  +   DK        + +L+      C+   +SYNV++ + +
Sbjct: 134 EGIVFKESLF------ISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILV 187

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
           +                G C                      A  +F +M  R   P+  
Sbjct: 188 S----------------GNCH-------------------KVAANVFYDMLSRKIPPTLF 212

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            F  ++ ++     +D+++ V  +M   G  P++ +Y +LI S +K  +++ AL+L +EM
Sbjct: 213 TFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 272

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
            + G  P+   F  +I    K  +++ A  +   M   GF P   TY  L+      G+V
Sbjct: 273 FLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRV 332

Query: 462 DSAMKLY--------------------------------NSMTSAGLRPGLSTYTALLTL 489
           D+A  L+                                + +TS G+ P + TY +L+  
Sbjct: 333 DAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYG 392

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTN 548
             K+ LV +A ++L +M+  G   +V +  +L+  + K G +D A   L  M + G++ N
Sbjct: 393 YWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPN 452

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
                 L  +  K      A  +         K D+  + S+++ L    + ++   L+ 
Sbjct: 453 TVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLR 512

Query: 609 ILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA--RYFVNVLLNYL 666
            + +    A+            R+      ++E    ++  + +G+       N L+  L
Sbjct: 513 DMISEGVVANTVTYNTLINAFLRRGE----IKEARKLVNEMVFQGSLLDEITYNSLIKGL 568

Query: 667 VLMGQINRARCVWKVAYENKLFPKAI 692
              G++++AR +++    + L P +I
Sbjct: 569 CRAGEVDKARSLFEKMLRDGLVPSSI 594



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 126/303 (41%), Gaps = 3/303 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L D   +    D   +L +EM  D  K        +N +I    K  ++  +
Sbjct: 416 PNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTV---GFNCLISAFCKEHRIPEA 472

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F+++    CK D  ++N L++          A  +   M       +  TY  +I +
Sbjct: 473 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 532

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             + G +  A KL  EM  +        + SL+  + +AG +D +  ++ +M   G  PS
Sbjct: 533 FLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPS 592

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           +     LI    ++G ++ A+    EM + G  P+   F  +I    ++G+++  +++F 
Sbjct: 593 SISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFR 652

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            ++  G  P   TY+ L+      G V  A  L +     G  P   T++ LL  L  ++
Sbjct: 653 KLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQE 712

Query: 495 LVD 497
            +D
Sbjct: 713 TLD 715


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 152/332 (45%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  ++  ++VP D C  +L + L + + F  +   + E++       +  F   N
Sbjct: 85  AIECFRLTRKHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYKEILECGYPTSLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N L+  ++  G   K F +  +M   
Sbjct: 141 ILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  T  ++I  L K  ++D A +LF EM ++   P+   F +L+D   K+GR+D +
Sbjct: 201 GVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           +++Y +M   G+ P    Y +LI    + G L  A  L  EM + G +P+   +T +I+ 
Sbjct: 261 LEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A  +   M           Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
             TYT ++    K+  V  A+K+L EM+  G+
Sbjct: 381 NGTYTMIINGFCKQGDVKTASKLLKEMQRDGH 412



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 148/348 (42%), Gaps = 1/348 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E +    K +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECFRLTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +  CG RPS   + +LI  Y + 
Sbjct: 125 KEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G  P+    T++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  SG+VD A+++Y  M   G  P L TY  L+  L ++  +  A  +++EM  
Sbjct: 245 TTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A    + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           A+ +L   +    K +   YT ++    +  D +    L+  +    H
Sbjct: 365 AEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGH 412



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 138/303 (45%), Gaps = 3/303 (0%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ F+  ++  F   F+    +++ + K     
Sbjct: 59  KGAQRSDIYVFSGLITAYLESGFLRDAIECFRLTRKHKFWVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G++  A  ++D +   G RP+   F  +I
Sbjct: 119 LVWGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLI 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + T M  +G  P   T + L+       ++D A +L+N M   GL 
Sbjct: 179 NGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M   GYS D+   + L+  + + G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L +   K    E+A  L +  +E + ++D V YT++++ L  
Sbjct: 299 IVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGL-- 356

Query: 597 CQD 599
           CQ+
Sbjct: 357 CQE 359


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 169/364 (46%), Gaps = 10/364 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  V+  L K+    ++   F+K+ + + K     Y++++      G    A  ++  M
Sbjct: 212 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 271

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      D  TY  +I  L   G+ D   K+ +EM  RN  P    F++L+D   K G+L
Sbjct: 272 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 331

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++Y EM   G  P    Y SLI+ + K   L  A +++D M   G  P+   ++++
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 391

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I S+ K+ ++D  M +F ++   G +P   TY+ L+     SG++++A +L+  M S G+
Sbjct: 392 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALR 535
            P + TY  LL  L     ++ A +I  +M+    ++ +   ++++  + + S VD A  
Sbjct: 452 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 511

Query: 536 WLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               +   G++    T N ++  L   C K +L E A  L     E     D   Y  ++
Sbjct: 512 LFCSLSDKGVKPDVVTYNVMIGGL---CKKGSLSE-ADMLFRKMKEDGCTPDDFTYNILI 567

Query: 592 -AHL 594
            AHL
Sbjct: 568 RAHL 571



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 179/369 (48%), Gaps = 8/369 (2%)

Query: 154 QLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213
           Q D++ + P +  + ++     +S  +L LFR  + ++      + Y ++ D L +   F
Sbjct: 207 QPDEVTYGPVLNRLCKS----GNSALALDLFRKMEERNIKASVVQ-YSIVIDSLCKDGSF 261

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           D  LSLF+EM     K  +     Y+ +I  L    K +      ++++  +   D  ++
Sbjct: 262 DDALSLFNEMEMKGIKADV---VTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 318

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + L+ +F+ +G   +A E+Y  M     + D  TY  +I    K   L  A ++F  M  
Sbjct: 319 SALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 378

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           +   P    ++ L++S  KA R+D  M+++ E+   G  P+   Y +L+  + ++GKL+ 
Sbjct: 379 KGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA 438

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  L+ EM   G  P+   + ++++    +G+L+ A+ IF  M+++        Y+ ++ 
Sbjct: 439 AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIH 498

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
              ++ +VD A  L+ S++  G++P + TY  ++  L K+  +  A  +  +MK  G + 
Sbjct: 499 GMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 558

Query: 514 DVSASDVLM 522
           D    ++L+
Sbjct: 559 DDFTYNILI 567



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 146/333 (43%), Gaps = 9/333 (2%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y  ++      G    A +++  ME+         Y ++I SL K G  D A+ LF
Sbjct: 209 DEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF 268

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM+ +  +     ++SL+  +   G+ D   K+  EM G    P    + +LI+ + K 
Sbjct: 269 NEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKE 328

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           GKL  A  L++EM   G  P+   +  +I+   K   L  A  +F  M   G  P   TY
Sbjct: 329 GKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTY 388

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S L+  +  + +VD  M+L+  ++S GL P   TY  L+    +   ++ A ++  EM +
Sbjct: 389 SILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS 448

Query: 509 MGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSS----GIRTNNFIVRQLFESCMKNA 563
            G    V    +L+  + D G ++ AL     M  S    GI   N I+  +  +    +
Sbjct: 449 RGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA----S 504

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             + A  L  +  +   K D+V Y  ++  L +
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCK 537



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 146/327 (44%), Gaps = 1/327 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           DT +++ L+  F  +G   +A  + + M + +   D  T   +I  L   GR+  A+ L 
Sbjct: 139 DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLI 198

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             M E  F+P    +  +++ + K+G    ++ ++ +M+    + S   Y  +I+S  K 
Sbjct: 199 DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKD 258

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G  D AL L++EM + G + +   ++ +I      GK D    +  +M     +P   T+
Sbjct: 259 GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 318

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S L+++    G++  A +LYN M + G+ P   TY +L+    K   +  A ++   M +
Sbjct: 319 SALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 378

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D+    +L+  Y K   VD  +R  R + S G+  N      L     ++    +
Sbjct: 379 KGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA 438

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHL 594
           AK L +  V       +V Y  +L  L
Sbjct: 439 AKELFQEMVSRGVPPSVVTYGILLDGL 465



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 116/259 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    K + L  +   F  ++   C+ D  +Y++L+  +           ++  +
Sbjct: 352 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 411

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  +  TY  ++    +SG+L+AA +LFQEM  R   PS   +  L+D +   G L
Sbjct: 412 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 471

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +++++ +MQ         +Y  +I     A K+D A  L+  +   G +P+   + ++
Sbjct: 472 NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM 531

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K G L  A  +F  M+  G  P   TY+ L+  H     + S+++L   M   G 
Sbjct: 532 IGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGF 591

Query: 477 RPGLSTYTALLTLLAKRKL 495
               ST   ++ +L+ R+L
Sbjct: 592 SADSSTIKMVIDMLSDRRL 610


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 136/274 (49%)

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           K G     +YN +I+ L +  K++ +   ++ + + DC  D+ +Y VL+      G   K
Sbjct: 353 KEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNK 412

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A  I E  E G   LD   Y  MI  L + GRLD    +  +M +   +P+ ++  ++++
Sbjct: 413 ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVIN 472

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
              +A +L+ +++ +  M   G  P+   Y +LI   +KA +   A  L  EM   G++P
Sbjct: 473 GFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKP 532

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           N   +++++    +  KLD+A++++      GF P    ++ ++    SSG+V+ A++LY
Sbjct: 533 NMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLY 592

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           + M      P L T+  L+    K +  + A+KI
Sbjct: 593 SEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKI 626



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 173/385 (44%), Gaps = 5/385 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y ++ + L +   FD    ++  M    ++ G  L++ Y+ +I  L  +  L+ +
Sbjct: 253 PNIPSYNVMINGLCKCGKFDESFEIWHRM--KKNERGQDLYT-YSTLIHGLCGSGNLDGA 309

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              +K++ ++    D   YN ++  +L  G   +  E+++ MEK  C    S Y ++I  
Sbjct: 310 TRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVS-YNILIRG 368

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L ++ ++D AI +++ + E++       +  LV  + K G L+ ++ +  E +       
Sbjct: 369 LFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLD 428

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y S+I    + G+LD    + D+M   G +PN  +   +I    ++ KL+ A+  F 
Sbjct: 429 TFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFG 488

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M   G  PT  TY+ L+   + + +   A  L   M   G +P + TY+ L+  L + K
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGK 548

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +D+A  +  +    G+  DV   ++++  +   G V+ AL+    M       N     
Sbjct: 549 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHN 608

Query: 554 QLFESCMKNALYESAKPLLETYVES 578
            L E   K   +E A  + +  ++S
Sbjct: 609 TLMEGFYKVRDFERASKIWDHILQS 633



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 143/334 (42%), Gaps = 5/334 (1%)

Query: 266 CKIDTQSYNVLMTLFL--NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
           C+   +SYN L+   +  NK    ++F +Y   E    S +  TY ++I    +  + D 
Sbjct: 110 CQPGIRSYNSLLNALIESNKWDEAESFFLY--FETMGLSPNLQTYNILIKISCRKKQFDK 167

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A +L   M E+ F P    + +L++S+ K G +  ++K++ EM   G  P    Y  LI+
Sbjct: 168 AKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILID 227

Query: 384 SYAKAGKLDTALRLWDE-MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
            + K G +  A  +W+  ++     PN   + ++I    K GK D +  I+  M++    
Sbjct: 228 GFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERG 287

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
               TYS L+     SG +D A ++Y  M   G+ P +  Y  +L    +   ++   ++
Sbjct: 288 QDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLEL 347

Query: 503 LLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
              M+  G    VS + ++    ++  VD A+     +       ++     L     KN
Sbjct: 348 WKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKN 407

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                A  +LE        +D   Y+S++  L R
Sbjct: 408 GYLNKALSILEEAENGRGDLDTFAYSSMINGLCR 441



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 157/362 (43%), Gaps = 3/362 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN ++  L +++K + +   F          + Q+YN+L+ +   K    KA E+   M
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 175

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   S D  +Y  +I SLAK+G +  A+KLF EM ER   P    +  L+D   K G +
Sbjct: 176 WEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDI 235

Query: 357 DTSMKVYME-MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
             + +++   ++G    P+ P Y  +I    K GK D +  +W  M+      +   ++ 
Sbjct: 236 LNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYST 295

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I     SG LD A  ++ +M   G  P    Y+ +L  +  +G+++  ++L+  M   G
Sbjct: 296 LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 355

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHAL 534
            R  +S Y  L+  L +   VD A  I   +       D     VL+  + K+G ++ AL
Sbjct: 356 CRTVVS-YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 414

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             L    +     + F    +     +    +    +L+   +   K +  +  +V+   
Sbjct: 415 SILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGF 474

Query: 595 VR 596
           VR
Sbjct: 475 VR 476



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 3/173 (1%)

Query: 379 VSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           +++I++YAK    D AL ++  M  I G +P    +  ++ +  +S K D A S F   E
Sbjct: 82  LTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFE 141

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   TY+ L+++     Q D A +L N M   G  P + +Y  L+  LAK   + 
Sbjct: 142 TMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMS 201

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR-WLRFMGSSGIRTN 548
            A K+  EM   G + DV+  ++L+  + K G + +A   W R +    +  N
Sbjct: 202 DALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPN 254


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 150/336 (44%), Gaps = 4/336 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  ++ + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVI-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +   M+  
Sbjct: 141 ILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 XCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           + TYT ++    K+  V   +K+L EM+  GY  +V
Sbjct: 381 IGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNV 416



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 146/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   +I  L K          +
Sbjct: 65  DXYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+    K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKI 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M+ +G  P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEXCKKGD 396



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 91/211 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LB+    +  ++  L+      G    A EIY  M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P   T
Sbjct: 388 INEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 159/355 (44%), Gaps = 14/355 (3%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N VI +L K  +L  +   F ++ +  C  D  ++N L+  +   G   +  ++ E M 
Sbjct: 191 FNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMR 250

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  D  TY  +I    K GR++ A   F  MK      +   F++ VD+  K G + 
Sbjct: 251 RSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVR 310

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +MK++ +M+  G   +   Y  LI+   KAG+LD A+ L DEM   G   N   +T+++
Sbjct: 311 EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLV 370

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K  K+  A  +   ME+AG       Y+ L+  H  +   + A+ L + M + GL 
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
             +S Y AL+  L     +D A  +L +M   G   +      +M    K G V  A+  
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           L+ +  SG + NN         C+  A+      L    V     +D V+YT++L
Sbjct: 491 LQKILDSGFQPNN--------GCLNEAV-----QLFNEMVHKGMSLDKVVYTALL 532



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T+ ++I  L K G L  A  LF  MKE    P    F SL+D  GK G LD   ++  EM
Sbjct: 190 TFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEM 249

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G +     Y +LI  + K G+++TA   +  M+  G   N   F+  +++  K G +
Sbjct: 250 RRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLV 309

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             AM +F  M   G      TY+CL++    +G++D A+ L + M   G+   + TYT L
Sbjct: 310 REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVL 369

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG-----SVDHALRWLRFMG 541
           +  L K + V  A  +L  M+  G    V A+++L   +  G     + + AL  L  M 
Sbjct: 370 VDGLCKERKVAEAEDVLRMMEKAG----VRANELLYTTLIHGHFMNKNSEKALGLLSEMK 425

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           + G+  +  +   L +        + AK LL    ES  + + ++YT+++
Sbjct: 426 NKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMM 475



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 131/279 (46%), Gaps = 7/279 (2%)

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           +SGRL    +LF+++   N   +FNI   ++D + K G L  +  ++  M+  G  P   
Sbjct: 171 RSGRL--VRRLFEQLPAPNVF-TFNI---VIDFLCKEGELAEARSLFSRMKEMGCLPDVV 224

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            + SLI+ Y K G+LD   +L +EMR +G + +   +  +I    K G+++ A   F  M
Sbjct: 225 TFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAM 284

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +R G +    T+S  ++     G V  AMKL+  M   G+     TYT L+    K   +
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           D A  +L EM   G  ++V    VL+  + K+  V  A   LR M  +G+R N  +   L
Sbjct: 345 DDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTL 404

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                 N   E A  LL        ++D+ LY +++  L
Sbjct: 405 IHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL 443



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 155/403 (38%), Gaps = 61/403 (15%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           SLF   K     +P    +  L D   +  + D +  L +EM     K  +     YN +
Sbjct: 209 SLFSRMKEMGC-LPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVV---TYNAL 264

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           I    K  ++E +Y  F  +       +  +++  +  F  +GL  +A +++  M     
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           +L+  TY  +I    K+GRLD AI L  EM  +    +   +  LVD + K  ++  +  
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAED 384

Query: 362 VYMEMQGCGHRPSAPMYVSLIESY-----------------------------------A 386
           V   M+  G R +  +Y +LI  +                                    
Sbjct: 385 VLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLC 444

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK--------------------- 425
              KLD A  L  +M  +G  PN+ ++T ++++  KSGK                     
Sbjct: 445 NVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNG 504

Query: 426 -LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
            L+ A+ +F +M   G       Y+ LL+ +   G +  A  L   M  +GL+  L  YT
Sbjct: 505 CLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYT 564

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
             ++      ++  A ++  EM   G + D +  + L+  I +
Sbjct: 565 CFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLITQIPE 607



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 117/264 (44%), Gaps = 9/264 (3%)

Query: 338 PSFNIFASLVDSM----GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           P  +  AS+VD++       G LD +++    ++     P+      ++   A+      
Sbjct: 116 PRRSALASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRL 175

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
             RL++++      PN   F ++I+   K G+L  A S+F+ M+  G LP   T++ L++
Sbjct: 176 VRRLFEQLPA----PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLID 231

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +   G++D   +L   M  +G +  + TY AL+    K   ++ A      MK  G   
Sbjct: 232 GYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMA 291

Query: 514 DV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           +V + S  +  + K+G V  A++    M   G+  N F    L +   K    + A  LL
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 573 ETYVESAAKVDLVLYTSVLAHLVR 596
           +  V     +++V YT ++  L +
Sbjct: 352 DEMVRQGVPLNVVTYTVLVDGLCK 375


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 198/426 (46%), Gaps = 15/426 (3%)

Query: 136 AKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALK---VINDSDTSLSLFRWAKRQSW 192
           AKI++ V       +L  ++ K+ F P ++  T  +K    I  +  +L L +  + +  
Sbjct: 155 AKIIDAV-------KLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGC 207

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
             P    Y  + D L + R  +  +  F EMV       +     Y+ ++       +L 
Sbjct: 208 K-PDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVV---TYSSILHGFCNLGQLN 263

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   FK+++  +   +T ++ +L+     +G+  +A  ++E M +     D  TY  ++
Sbjct: 264 EATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALM 323

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
                  ++D A KLF  M  + F PS  ++  L++   K+ RL+ +  +  EM      
Sbjct: 324 DGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLT 383

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y +L++ + +AG+   A +L+ EM   G  P+   ++++++   K G LD A  +
Sbjct: 384 PDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRL 443

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M+ +   P    Y+ L++   + G++++A +L++++   G++P + TYT +++ L K
Sbjct: 444 LKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLK 503

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDV-LMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
             L + A ++  +M   G   +    +V +  ++++G   +A+R +  M   G   ++  
Sbjct: 504 EGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSST 563

Query: 552 VRQLFE 557
            + L +
Sbjct: 564 FQMLLD 569



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 155/340 (45%), Gaps = 1/340 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++  L+    +K     A ++++ + K   +    TY  +I  L K G    A++L ++M
Sbjct: 143 TFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKM 202

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           +E+  +P    + +++DS+ K  R + +M  + EM   G  P+   Y S++  +   G+L
Sbjct: 203 EEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQL 262

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A  L+ +M      PN   FT++++   K G +  A  +F  M   G  P   TYS L
Sbjct: 263 NEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSAL 322

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++ +    Q+D A KL++ M   G  P +  Y  L+    K + ++ A  +L EM     
Sbjct: 323 MDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDL 382

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           + D V+ S ++  + + G    A +  + M S G+  ++     L +   K+   + A  
Sbjct: 383 TPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFR 442

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
           LL+   ES  +  + +Y  ++  +      +  R L + L
Sbjct: 443 LLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNL 482



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 119/272 (43%), Gaps = 3/272 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L D        D    LFD MV       + +   YN +I    K+ +L  +
Sbjct: 314 PDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRV---YNILINGHCKSRRLNEA 370

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                ++ D D   DT +Y+ LM  F   G P  A ++++ M       D  TY +++  
Sbjct: 371 KTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDG 430

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K G LD A +L + M+E    P   I+  L+  M   G+L+ + +++  +   G +PS
Sbjct: 431 LCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPS 490

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  +I    K G  + A  ++ +M + G  PN   + + I+   ++G    A+ +  
Sbjct: 491 VVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIE 550

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
           +M   GF    ST+  LL++ ++   +   M+
Sbjct: 551 EMVGRGFSADSSTFQMLLDLESNDEIISRFMR 582



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 101/224 (45%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN+L+          +A  +   M   + + D  TY  ++    ++GR   A KLF+EM 
Sbjct: 354 YNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMC 413

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P    ++ L+D + K G LD + ++   MQ     P   +Y  LI+     GKL+
Sbjct: 414 SYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLE 473

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A  L+  + + G +P+   +T++I    K G  + A  +F  M   G LP   TY+  +
Sbjct: 474 AARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAI 533

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +    +G   +A++L   M   G     ST+  LL L +  +++
Sbjct: 534 QGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDLESNDEII 577



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 5/184 (2%)

Query: 370 GHRPSAPMYV--SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES--HAKSGK 425
           G RP  P+ V   L+ S  K     T + L  +M ++  RPN    T++I    H+    
Sbjct: 62  GIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDH 121

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           +  A S    M + G  PT  T+  LL    S  ++  A+KL++ +   G  P L TYT 
Sbjct: 122 VHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTT 181

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSG 544
           ++  L K      A ++L +M+  G   DV A + V+    KD   + A+ +   M   G
Sbjct: 182 IIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQG 241

Query: 545 IRTN 548
           I  N
Sbjct: 242 IPPN 245


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 158/364 (43%), Gaps = 2/364 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AYN VI    KAD+++ +     ++     + D  +YN+L+  F  +G    A  + + +
Sbjct: 148 AYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQL 207

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K  C     TY ++I +    G +D A+KL  EM  R  RP    +  +V+ M K G L
Sbjct: 208 LKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGML 267

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + +    +   G       Y  L+      GK +   +L  +M + G  PN   ++ +
Sbjct: 268 DRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTL 327

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I +  + GK+D A ++   M+     P   +Y  L+      G+VD A++  + M S G 
Sbjct: 328 ITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGH 387

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P + +Y ++L  L K    D A  I  ++  +G   +  + + L   +   G    AL 
Sbjct: 388 LPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALG 447

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA-AKVDLVLYTSVLAHL 594
            +  M S+GI  +      L     ++ L + A  LL    ES   +  ++ Y +VL  L
Sbjct: 448 MILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGL 507

Query: 595 VRCQ 598
            + Q
Sbjct: 508 CKVQ 511



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 1/338 (0%)

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++L+   K D  +YN +++ F        A ++ + M+K     D  TY ++I +    G
Sbjct: 136 EILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRG 195

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           RLD A+++  ++ + N +P+   +  L+++    G +D +MK+  EM   G RP    Y 
Sbjct: 196 RLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYN 255

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            ++    K G LD A      +   G       + +++      GK +    + +DM   
Sbjct: 256 VVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVK 315

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P P TYS L+      G++D A  +   M    L P   +Y  L++ L +   VD+A
Sbjct: 316 GCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLA 375

Query: 500 AKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            + L +M + G+  D+ S + +L    K+G+ D AL     +G  G   N      LF +
Sbjct: 376 IEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGA 435

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +     A  ++   + +    D + Y S+++ L R
Sbjct: 436 LWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCR 473



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 37/293 (12%)

Query: 214 DGMLSLFDEMVHDSSKNG-ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           +GML    E +   SKNG ++  S YN +++ L    K E        +L   C+ +  +
Sbjct: 264 EGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPIT 323

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y+ L+T     G   +A  + + M++   + DG +Y+ +I +L + G++D AI+   +M 
Sbjct: 324 YSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMI 383

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P    + S++ S+ K G  D ++ ++ ++   G  P+A  Y +L  +   +G   
Sbjct: 384 SGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKI 443

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA------------- 439
            AL +  EM   G  P+   +  +I    + G +D A+ +  DM  +             
Sbjct: 444 RALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTV 503

Query: 440 -----------------------GFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
                                  G LP  +TY+ L++    +G    AM+L N
Sbjct: 504 LLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMELAN 556


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 180/412 (43%), Gaps = 30/412 (7%)

Query: 116 FDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVIN 175
            D HV++  +     N S +A+ +    +++    +  ++    F+P     ++ + ++ 
Sbjct: 437 LDAHVVLNKV-----NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLC 491

Query: 176 DS---DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI 232
           ++   D +  LF   K  +  VP    Y +L D   +          FDEMV D     +
Sbjct: 492 NASKVDNAFLLFEEMK-SNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNV 550

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
             ++A   +I    KA K+  +   F+ +L   C  +  +Y  L+      G   KA +I
Sbjct: 551 VTYTA---LIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 293 YESMEKGECSL----------DGS-------TYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           Y  M +G   +          DG+       TY  ++  L K+ ++  A  L   M    
Sbjct: 608 YARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEG 666

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P+  ++ +L+D   K G+LD +  V+ +M   G+ P+   Y SLI+   K  +LD AL
Sbjct: 667 CEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLAL 726

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           ++   M      PN  ++T +I+   K GK D A  + + ME  G  P   TY+ +++  
Sbjct: 727 KVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF 786

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
             +G+VD  ++L   M + G  P   TY  L+       L+D A ++L EMK
Sbjct: 787 GKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMK 838



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 160/366 (43%), Gaps = 17/366 (4%)

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
           + L   D LE++   + ++LD+   ++  + + L       G   KA+ I   M      
Sbjct: 418 EKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFI 477

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
            D STY  +I  L  + ++D A  LF+EMK  +  P    +  L+DS  K G L  + K 
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           + EM   G  P+   Y +LI +Y KA K+ +A  L++ M   G  PN   +T +I+ H K
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 423 SGKLDIAMSIFTDMERAGFLPTPS----------------TYSCLLEMHASSGQVDSAMK 466
           SG+++ A  I+  M     +P                   TY  L++    + +V  A  
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYI 525
           L + M+  G  P    Y AL+    K   +D A  +  +M   GY  +V + S ++    
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           KD  +D AL+ L  M  +    N  I  ++ +   K    + A  L+    E     ++V
Sbjct: 718 KDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVV 777

Query: 586 LYTSVL 591
            YT+++
Sbjct: 778 TYTAMI 783



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 166/399 (41%), Gaps = 57/399 (14%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           ++P    Y  +  +L  +   D    LF+EM    S + +     Y  +I    K   L+
Sbjct: 476 FIPDTSTYSKVIGLLCNASKVDNAFLLFEEM---KSNHVVPDVFTYTILIDSFCKVGLLQ 532

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F +++   C  +  +Y  L+  +L       A E++E M    C  +  TY  +I
Sbjct: 533 QARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 313 PSLAKSGRLDAAIKLFQEMK---------------ERNFR-PSFNIFASLVDSMGKAGRL 356
               KSG+++ A +++  M+               + N R P+   + +LVD + KA ++
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 357 DTSMKVY--MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
             +  +   M ++GC   P+  +Y +LI+ + K GKLD A  ++ +M   G+ PN   ++
Sbjct: 653 KEARDLLDVMSVEGC--EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+   K  +LD+A+ + + M      P    Y+ +++     G+ D A +L + M   
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534
           G  P + TYTA++                      G+              K G VD  L
Sbjct: 771 GCHPNVVTYTAMID---------------------GFG-------------KAGKVDKCL 796

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
             +R MG+ G   N    R L   C    L + A  LL+
Sbjct: 797 ELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLD 835



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 143/330 (43%), Gaps = 42/330 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L D L ++        L D M V     N I     Y+ +I    K  KL+ +   F
Sbjct: 639 YGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHI----VYDALIDGFCKVGKLDEAQMVF 694

Query: 259 KKVLDSDCKIDTQSYNVLMT-LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
            K+ +     +  +Y+ L+  LF +K L   A ++   M +  C+ +   Y  MI  L K
Sbjct: 695 TKMSERGYGPNVYTYSSLIDRLFKDKRLDL-ALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G+ D A +L   M+E+   P+   + +++D  GKAG++D  +++  +M   G  P+   
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 378 YVSLIESYAKAGKLDTALRLWDEMR-------IAGFR----------------------- 407
           Y  LI     AG LD A +L DEM+       +AG+R                       
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 408 ---PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST--YSCLLEMHASSGQVD 462
              P    + ++I+S  K+G+L++A+ +  +M             YS L+E  + + +VD
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVD 933

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
            A +LY  M   G  P LS +  L+  L +
Sbjct: 934 KAFELYADMIKRGGIPELSIFFYLVKGLIR 963



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 194/507 (38%), Gaps = 79/507 (15%)

Query: 138 IVEVVNRWKWGPELETQLDKLQFVPKM--VHITQALKVINDSDTSLSLFRWAKRQSWYVP 195
           I +V+     G   +TQ    QF  K+    +   L ++ + +  +  F WA RQ  Y  
Sbjct: 101 ISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQIGYGH 160

Query: 196 GDECYVMLFDVLN-------------ESRDFDGML--SLFDEMVHDSSKNGISLFS---- 236
               Y  L +VL              E RD D  +   L + ++    +NG+   +    
Sbjct: 161 TGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEEL 220

Query: 237 -------------AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
                         YN +++   +AD+L+ +Y   +++ DS   +D  +    + L    
Sbjct: 221 GRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKA 280

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-------F 336
           G   +A  +   +EK E  LD   Y  MI  L ++   + A+     M+  +       +
Sbjct: 281 GRWREALAL---IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTY 337

Query: 337 R----------------------------PSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
           R                            PS  IF SL+ +  ++G    + K+  +M  
Sbjct: 338 RILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGD 397

Query: 369 CGHRPSAPMYVSLIESYAKAGK------LDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           CG +P   +Y  LI       K      L+ A + + EM  A    N    + +      
Sbjct: 398 CGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCG 457

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           +GK + A SI  +M   GF+P  STYS ++ +  ++ +VD+A  L+  M S  + P + T
Sbjct: 458 AGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFT 517

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMG 541
           YT L+    K  L+  A K   EM   G + +V     L+  Y+K   +  A      M 
Sbjct: 518 YTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMML 577

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESA 568
           S G   N      L +   K+   E A
Sbjct: 578 SEGCIPNVVTYTALIDGHCKSGQIEKA 604



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 137/313 (43%), Gaps = 43/313 (13%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLD----SDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
            Y  ++  L KA K++ +    + +LD      C+ +   Y+ L+  F   G   +A  +
Sbjct: 638 TYGALVDGLCKAHKVKEA----RDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  M +     +  TY  +I  L K  RLD A+K+   M E +  P+  I+  ++D + K
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G+ D + ++   M+  G  P+   Y ++I+ + KAGK+D  L L  +M   G  PNF  
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMER-------AGF------------------------ 441
           + ++I     +G LD A  +  +M++       AG+                        
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 442 --LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST--YTALLTLLAKRKLVD 497
             +P    Y  L++    +G+++ A++L+  M+S           Y++L+  L+    VD
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVD 933

Query: 498 VAAKILLEMKTMG 510
            A ++  +M   G
Sbjct: 934 KAFELYADMIKRG 946



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 38/278 (13%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +  Y P    Y  L D L + +  D  L +   M+ +S    + +   Y  +I  L K  
Sbjct: 699 ERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVII---YTEMIDGLCKVG 755

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           K + +Y     + +  C  +  +Y  ++  F   G   K  E+   M    C+ +  TY 
Sbjct: 756 KTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYR 815

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKE------------------RNFRPSFNI--------- 342
           ++I     +G LD A +L  EMK+                  R F  S  +         
Sbjct: 816 VLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVA 875

Query: 343 ------FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA--PMYVSLIESYAKAGKLDTA 394
                 +  L+DS  KAGRL+ +++++ EM  C    +A   +Y SLIES + A K+D A
Sbjct: 876 VPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKA 935

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
             L+ +M   G  P   +F  +++   +  + + A+ +
Sbjct: 936 FELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQL 973


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   + VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 91  AIDCYRLTREHKFCVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A KLF EM E+   P+   F +L+D   K G +D +
Sbjct: 207 GVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 387 TRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 141/319 (44%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  + G L  AI  ++  +E  F   F+    +++ + K     
Sbjct: 65  KGTQRSDIYVFSGLITAYLELGFLRDAIDCYRLTREHKFCVPFDTCRKVLEHLMKLKYFK 124

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A KL++ M   GL 
Sbjct: 185 NGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLV 244

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +     D+   + L+  + K G +  A   
Sbjct: 245 PNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDL 304

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L + C K    ++A    +  ++   ++D V YT++++ L  
Sbjct: 305 IDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGL-- 362

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 363 CQEGRSVDAEKMLREMLSV 381


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 180/399 (45%), Gaps = 9/399 (2%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           ++  S  +F+ A +   +  GD     + +    S DFD +  L   +     +N + + 
Sbjct: 56  EAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRI---RLENRVIIE 112

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
            ++  V +   KA   + +   F +++D   CK   +S+N ++ + +N+GL ++  E Y+
Sbjct: 113 RSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYD 172

Query: 295 SMEKGECSL----DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            +     ++    +G ++ L+I +L K   +D AI++F+ M ER   P    + +L+D +
Sbjct: 173 YVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGL 232

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K  R+D ++ +  EMQ  G  PS  +Y  LI+   K G L    +L D M + G  PN 
Sbjct: 233 CKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNE 292

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +  +I      GKLD A+S+   M  +  +P   TY  L+       +   A++L +S
Sbjct: 293 VTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSS 352

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS 529
           M   G       Y+ L++ L K    + A  +  +M   G   ++    VL+    ++G 
Sbjct: 353 MEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGK 412

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
            + A   L  M +SG   N +    L +   K  L E A
Sbjct: 413 PNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEA 451



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 161/348 (46%), Gaps = 8/348 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L D L +  D   +  L D M     K  +     YN +I  L    KL+ +
Sbjct: 255 PSPVIYNVLIDGLCKKGDLTRVTKLVDNMFL---KGCVPNEVTYNTLIHGLCLKGKLDKA 311

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               ++++ S C  +  +Y  L+   + +     A  +  SME+    L+   Y ++I  
Sbjct: 312 VSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISG 371

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K G+ + A+ L+++M E+  +P+  +++ LVD + + G+ + + ++   M   G  P+
Sbjct: 372 LFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPN 431

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           A  Y SL++ + K G  + A+++W EM   G   N   ++++I+     G++  AM +++
Sbjct: 432 AYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWS 491

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM---TSAGLRPGLSTYTALLTLLA 491
            M   G  P    YS +++     G +D+A+KLY+ M        +P + TY  LL  L 
Sbjct: 492 KMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLC 551

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI--KDGSVDHALRWL 537
            +K +  A  +L  M   G   DV   +  +  +  K  S D    +L
Sbjct: 552 MQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFL 599



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 139/300 (46%), Gaps = 1/300 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++  L K ++++ +     ++    C      YNVL+     KG   +  ++ ++M
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNM 283

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  TY  +I  L   G+LD A+ L + M      P+   + +L++ + K  R 
Sbjct: 284 FLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRA 343

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++++   M+  G+  +  +Y  LI    K GK + A+ LW +M   G +PN  +++++
Sbjct: 344 TDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVL 403

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   + GK + A  I   M  +G LP   TYS L++    +G  + A++++  M   G 
Sbjct: 404 VDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGC 463

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
                 Y+ L+  L     V  A  +  +M T+G   D V+ S ++      GS+D AL+
Sbjct: 464 SRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALK 523



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 174/403 (43%), Gaps = 14/403 (3%)

Query: 206 VLNESRDFDGMLSLFDEMVHDS-----SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++NE     G L  +D +V+ +     S NG+S    +N VI+ L K   ++ +   F+ 
Sbjct: 158 IINEGLYHRG-LEFYDYVVNSNMNMNISPNGLS----FNLVIKALCKLRFVDRAIEVFRG 212

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           + +  C  D  +Y  LM     +    +A  + + M+   CS     Y ++I  L K G 
Sbjct: 213 MPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGD 272

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L    KL   M  +   P+   + +L+  +   G+LD ++ +   M      P+   Y +
Sbjct: 273 LTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGT 332

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI    K  +   A+RL   M   G+  N  +++++I    K GK + AMS++  M   G
Sbjct: 333 LINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG 392

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P    YS L++     G+ + A ++ N M ++G  P   TY++L+    K  L + A 
Sbjct: 393 CKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAV 452

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++  EM   G S +     VL+  +   G V  A+     M + GI+ +      + +  
Sbjct: 453 QVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGL 512

Query: 560 MKNALYESAKPLLETYV---ESAAKVDLVLYTSVLAHLVRCQD 599
                 ++A  L    +   E  ++ D+V Y  +L  L   +D
Sbjct: 513 CGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKD 555


>gi|356574085|ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Glycine max]
          Length = 733

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 169/392 (43%), Gaps = 19/392 (4%)

Query: 143 NRWKWGPELETQLDKLQ-FVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYV 201
           N  KW P +  +L KL+   P +V   + LKV  +   +   F WA  Q  Y      Y 
Sbjct: 111 NDNKWCPNVAAELSKLRRITPNLV--AEVLKVQTNHTLASKFFHWAGSQRGYHHNFASYN 168

Query: 202 MLFDVLNESRDF---DGMLSLFDEMVHDSSKNG----ISLFSAYNRVIQYLAKADKLEMS 254
            L   LN    F   D +  L +      S+      I + S  NR ++     +K+   
Sbjct: 169 ALAYCLNRHHQFRAADQLPELMESQGKPPSEKQFEILIRMHSDANRGLRVYHVYEKMRNK 228

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +    +V           YN +M   +  G    A  +Y+ +++     +  T+ +++  
Sbjct: 229 FGVKPRVF---------LYNRVMDALVRTGHLDLALSVYDDLKEDGLVEESVTFMVLVKG 279

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K GR+D  +++   M+ER  +P    + +LV  +  AG LD  ++V+ EM+     P 
Sbjct: 280 LCKCGRIDEMLEVLGRMRERLCKPDVFAYTALVKILVPAGNLDACLRVWEEMKRDRVEPD 339

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y ++I   AK G++     L+ EM+  G   +  ++  ++E+    GK+++A  +  
Sbjct: 340 VKAYATMIVGLAKGGRVQEGYELFREMKGKGCLVDRVIYGALVEAFVAEGKVELAFDLLK 399

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           D+  +G+      Y CL+E   +  +V  A KL+      GL P   T   LL   A+  
Sbjct: 400 DLVSSGYRADLGIYICLIEGLCNLNRVQKAYKLFQLTVREGLEPDFLTVKPLLVAYAEAN 459

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYIK 526
            ++   K+L +M+ +G+ V    S    V ++
Sbjct: 460 RMEEFCKLLEQMQKLGFPVIADLSKFFSVLVE 491



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 121/264 (45%), Gaps = 2/264 (0%)

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +R +  +F  + +L   + +  +   + ++   M+  G  PS   +  LI  ++ A +  
Sbjct: 157 QRGYHHNFASYNALAYCLNRHHQFRAADQLPELMESQGKPPSEKQFEILIRMHSDANRGL 216

Query: 393 TALRLWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
               ++++MR   G +P   L+  ++++  ++G LD+A+S++ D++  G +    T+  L
Sbjct: 217 RVYHVYEKMRNKFGVKPRVFLYNRVMDALVRTGHLDLALSVYDDLKEDGLVEESVTFMVL 276

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++     G++D  +++   M     +P +  YTAL+ +L     +D   ++  EMK    
Sbjct: 277 VKGLCKCGRIDEMLEVLGRMRERLCKPDVFAYTALVKILVPAGNLDACLRVWEEMKRDRV 336

Query: 512 SVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             DV A   ++V + K G V       R M   G   +  I   L E+ +     E A  
Sbjct: 337 EPDVKAYATMIVGLAKGGRVQEGYELFREMKGKGCLVDRVIYGALVEAFVAEGKVELAFD 396

Query: 571 LLETYVESAAKVDLVLYTSVLAHL 594
           LL+  V S  + DL +Y  ++  L
Sbjct: 397 LLKDLVSSGYRADLGIYICLIEGL 420



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 156/399 (39%), Gaps = 43/399 (10%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+    P    Y  L  +L  + + D  L +++EM  D  +  +    AY  +I  LAK 
Sbjct: 297 RERLCKPDVFAYTALVKILVPAGNLDACLRVWEEMKRDRVEPDVK---AYATMIVGLAKG 353

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            +++  Y  F+++    C +D   Y  L+  F+ +G    AF++ + +       D   Y
Sbjct: 354 GRVQEGYELFREMKGKGCLVDRVIYGALVEAFVAEGKVELAFDLLKDLVSSGYRADLGIY 413

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I  L    R+  A KLFQ        P F     L+ +  +A R++   K+  +MQ 
Sbjct: 414 ICLIEGLCNLNRVQKAYKLFQLTVREGLEPDFLTVKPLLVAYAEANRMEEFCKLLEQMQK 473

Query: 369 CGH---------------------------------RPSAPMYVSLIESYAKAGKLDTAL 395
            G                                    S  +Y   ++S  K G++  AL
Sbjct: 474 LGFPVIADLSKFFSVLVEKKGPIMALETFGQLKEKGHVSVEIYNIFMDSLHKIGEVKKAL 533

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            L+DEM+    +P+   +   I      G++  A +    +     +P+ + YS L +  
Sbjct: 534 SLFDEMKGLSLKPDSFTYCTAILCLVDLGEIKEACACHNRIIEMSCIPSVAAYSSLTKGL 593

Query: 456 ASSGQVDSAMKLY-NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              G++D AM L  + + +    P    Y+  +    K  + +    +L EM   G S+D
Sbjct: 594 CQIGEIDEAMLLVRDCLGNVSDGPLEFKYSLTIIHACKSNVAEKVIDVLNEMIEQGCSLD 653

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
            V    ++    K G+++ A +       S +R  NF+ 
Sbjct: 654 NVIYCSIISGMCKHGTIEEARKVF-----SNLRERNFLT 687



 Score = 46.6 bits (109), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 114/303 (37%), Gaps = 61/303 (20%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSD---TS 180
           G++  FL    +       NR +   +L  Q+ KL F P +  +++   V+ +      +
Sbjct: 440 GLEPDFLTVKPLLVAYAEANRMEEFCKLLEQMQKLGF-PVIADLSKFFSVLVEKKGPIMA 498

Query: 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS---A 237
           L  F   K +       E Y +  D L++  +    LSLFDEM       G+SL      
Sbjct: 499 LETFGQLKEKGHV--SVEIYNIFMDSLHKIGEVKKALSLFDEM------KGLSLKPDSFT 550

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG------------- 284
           Y   I  L    +++ +  C  ++++  C     +Y+ L       G             
Sbjct: 551 YCTAILCLVDLGEIKEACACHNRIIEMSCIPSVAAYSSLTKGLCQIGEIDEAMLLVRDCL 610

Query: 285 -----------------------LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
                                  +  K  ++   M +  CSLD   Y  +I  + K G +
Sbjct: 611 GNVSDGPLEFKYSLTIIHACKSNVAEKVIDVLNEMIEQGCSLDNVIYCSIISGMCKHGTI 670

Query: 322 DAAIKLFQEMKERNFRPSFNIFAS---LVDSMGK--AGRLDTSMKVY-----MEMQGCGH 371
           + A K+F  ++ERNF    N       L+D M K  A  + +S+K +     ++ +GC  
Sbjct: 671 EEARKVFSNLRERNFLTESNTIVYDELLIDHMKKKTADLVLSSLKFFGLESKLKAKGCKL 730

Query: 372 RPS 374
            PS
Sbjct: 731 LPS 733


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 126/566 (22%), Positives = 235/566 (41%), Gaps = 51/566 (9%)

Query: 268  IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            ++ + +N L+  +   G   +A  ++ +M K   S    +   ++ +L   GRL+    +
Sbjct: 813  VNRKVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVV 872

Query: 328  FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             QE+++  F+ S +    ++D+  +AG +    K+Y  M+  G+ PS  +Y  + +   +
Sbjct: 873  VQELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCR 932

Query: 388  AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
              ++     +  EM  AGF+P+  ++  +++ +           I+  ++  G  P   T
Sbjct: 933  GKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDT 992

Query: 448  YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
            Y+ L+ M+    +    + L + M + GL P L TY +L+    K++LV+ A ++  E++
Sbjct: 993  YNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQ 1052

Query: 508  TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
            + G  +D S   ++M +Y   GS   A R    M   G+      +  L  S   +   +
Sbjct: 1053 STGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLMVSYGSSGQPQ 1112

Query: 567  SAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD----------------EQNERHLMAIL 610
             A+ +L    E+ A +  + Y+SV+   VR  D                E + R     +
Sbjct: 1113 EAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDYNAGIQKLKQVKEEGLEPDHRIWTCFI 1172

Query: 611  SA---TKHKAHAFLC------GLFTGP----EQRKQPVLSFVREFFHGIDYELEEGAARY 657
             A   ++H + A L         F  P     ++ +P++S +      ++  L + AA  
Sbjct: 1173 RAASLSQHTSEAILLLNALRDTGFDLPIRLLTEKPEPLVSALDLCLEMLE-TLGDNAAFN 1231

Query: 658  FVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVM 717
            FVN L + L        A  V+ +A + K++   +       W  D R LS GAAL A +
Sbjct: 1232 FVNALEDLLWAFELRATASWVFLLAIKRKIYRHDVFRVADKDWGADFRKLSGGAALDASL 1291

Query: 718  HTLHRFRKRMLYYGVVPRRIKLVTGP------TLKIVIAQMLSSVESPFEVSKV---VLR 768
                            P+ + L+TG       +L   +   L  + SPF   K    +L 
Sbjct: 1292 QGCPE----------SPKSVALITGTAEYNMVSLDSTLKACLWEMGSPFLPCKTRSGLLI 1341

Query: 769  APGDSVMEWFK-KPIVQQFLLNEIPS 793
            A   S+  W K  P      L   PS
Sbjct: 1342 AKAHSLKMWLKDSPFCLDLELKNAPS 1367



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 141/302 (46%), Gaps = 3/302 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I   ++A  LE +   F  ++   C+ D  +YN +++++   GL  KA +++  +
Sbjct: 330 TYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDL 389

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E      D  +Y   + + A+ G ++    + +EM +  F      + +++   GK G+ 
Sbjct: 390 ESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQN 449

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++++Y +M+  G  P    Y  LI+S  K  K++ A  +  EM   G +P    ++ +
Sbjct: 450 DLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSAL 509

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I  +AK+GK   A   F  M R+G  P    YS +L++H    +   AM  Y  M   G+
Sbjct: 510 ICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIHDGI 569

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
            P  S Y  +L  L     V+   +++ +M+ +     ++   +  + +K    D A + 
Sbjct: 570 MPEHSLYELMLRTLGNANKVEDIGRVVRDMEEV---CGMNPQAISYILVKGDCYDEAAKM 626

Query: 537 LR 538
           LR
Sbjct: 627 LR 628



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 146/313 (46%), Gaps = 4/313 (1%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           ++  L KA++  ++   F +  +   +   + YN +M ++   G   K  E+++ M +  
Sbjct: 228 ILAVLGKANQEPLAVEVFTRA-EPSVENTVKVYNAMMGVYARSGKFNKVQELFDLMRERG 286

Query: 301 CSLDGSTYELMIPSLAKSGRL--DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
           C  D  ++  +I +  K+G +  + AI+L  E++    RP    + +L+ +  +A  L+ 
Sbjct: 287 CEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEE 346

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++ V+ +M      P    Y ++I  Y + G    A +L++++   GF P+   +   + 
Sbjct: 347 AVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLY 406

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           + A+ G ++    I  +M + GF     TY+ ++ M+   GQ D A++LY  M S+G  P
Sbjct: 407 AFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNP 466

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWL 537
            + TYT L+  L K   ++ AA ++ EM   G    +     L+  Y K G    A    
Sbjct: 467 DVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETF 526

Query: 538 RFMGSSGIRTNNF 550
             M  SG R +  
Sbjct: 527 DCMLRSGTRPDQL 539



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 5/292 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL--EMSYCC 257
           Y  +  V   S  F+ +  LFD M     +  +    ++N +I    KA ++   ++   
Sbjct: 259 YNAMMGVYARSGKFNKVQELFDLMRERGCEPDLV---SFNTLINARLKAGEMTPNLAIEL 315

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
             +V  S  + D  +YN L++         +A  +++ M    C  D  TY  MI    +
Sbjct: 316 LTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGR 375

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G    A +LF +++ R F P    + S + +  + G ++    +  EM   G       
Sbjct: 376 CGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMT 435

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y ++I  Y K G+ D AL+L+ +M+ +G  P+   +T++I+S  K+ K++ A  + ++M 
Sbjct: 436 YNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEML 495

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             G  PT  TYS L+  +A +G+   A + ++ M  +G RP    Y+ +L +
Sbjct: 496 NTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDI 547



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 166/365 (45%), Gaps = 7/365 (1%)

Query: 240 RVIQY-LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           + I Y L K D  + +    ++ +    +ID ++   +++ + + G    A ++ E +++
Sbjct: 608 QAISYILVKGDCYDEAAKMLRRAISDRYEIDRENLLSILSSYSSSGRHSVALDLLELLKE 667

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                     E ++  L K+ +LD A+K +   +E  F  SF +F +L+    +      
Sbjct: 668 HTPRSSQMITEALVVMLCKAQQLDTALKEYSNSRELGFTGSFTMFEALIQCCLENELFTE 727

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG-FRPNFGLFTMII 417
           + +V+ +M+ CG + S  +Y S++  Y K G  +TA  L D     G    N  ++  +I
Sbjct: 728 ASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNISVYVDVI 787

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E++ +      A S+  +M ++        ++ L+E +A+SG  + A  ++N+M   G  
Sbjct: 788 EAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERARAVFNTMMKDGPS 847

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV---YIKDGSVDHAL 534
           P + +   LL  L     ++    ++ E++ +G+   +S S +L++   + + G++    
Sbjct: 848 PTVDSINGLLQALIVDGRLEELYVVVQELQDIGFK--ISKSSILLMLDAFARAGNIFEVK 905

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           +    M ++G   +  + R + +   +       + +L    E+  K DL ++ SVL   
Sbjct: 906 KIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMY 965

Query: 595 VRCQD 599
           V   D
Sbjct: 966 VAIDD 970



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/278 (17%), Positives = 121/278 (43%)

Query: 238  YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            Y  + Q L +  ++        ++ ++  K D   +N ++ +++      K  +IY+ ++
Sbjct: 923  YRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIK 982

Query: 298  KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            +     D  TY ++I    +  R    + L  EM+     P  + + SLV S GK   ++
Sbjct: 983  EDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVE 1042

Query: 358  TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + +++ E+Q  G +     Y  +++ Y  +G    A RL+  M+  G  P      +++
Sbjct: 1043 QAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLM 1102

Query: 418  ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             S+  SG+   A  + ++++      +   YS +++ +  +G  ++ ++    +   GL 
Sbjct: 1103 VSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDYNAGIQKLKQVKEEGLE 1162

Query: 478  PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
            P    +T  +   +  +    A  +L  ++  G+ + +
Sbjct: 1163 PDHRIWTCFIRAASLSQHTSEAILLLNALRDTGFDLPI 1200


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 183/412 (44%), Gaps = 42/412 (10%)

Query: 202  MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL---------------- 245
            ++ DVLN +RD +  +  F E  H       + F A+NR++++L                
Sbjct: 1630 IVVDVLNHARDVEPTIQFF-EWCHGRHGYTHTAF-AFNRLLEFLVNKRQYKRAHQMLIAE 1687

Query: 246  AKADKLEMSYCCFKKVLDSDCK--------------------IDTQSYNVLMTLFLNKGL 285
            +K    + +   +  ++   C+                     + + YN+++T     G 
Sbjct: 1688 SKPSSFQANAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGK 1747

Query: 286  PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
              +A ++  SM    C+ D  TY ++I +L K GRL+ A  L + M+ R        + +
Sbjct: 1748 EKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNT 1807

Query: 346  LVDSMGKAG----RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            L+  + + G    R++ + +++ EM   GH P++  Y  +I++  +    + A ++ D M
Sbjct: 1808 LIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLM 1867

Query: 402  RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
               G   +   + M+I   AK+G +D AM +F +M   G +P   TY+ +++    +G+V
Sbjct: 1868 HENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKV 1927

Query: 462  DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
            + A KL+  M + G+ P   TYT++     K   +  A   L+EM+  G    +S   ++
Sbjct: 1928 EEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAISYVALI 1987

Query: 522  MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
                K G      + LR M   G + N      +FE+  K +  + AK +++
Sbjct: 1988 STICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQ 2039



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 12/229 (5%)

Query: 219  LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD----SDCKIDTQSYN 274
            LF+EMV D      S+   Y  VI  L +    E +    +KVLD    + C  D  +YN
Sbjct: 1828 LFEEMV-DKGHTPTSV--TYTVVIDALLRVKMDEQA----QKVLDLMHENGCAFDLVTYN 1880

Query: 275  VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            +L+  F   G+  KA +++  M    C  D  TY  ++    K+G+++ A KLF EMK R
Sbjct: 1881 MLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKAR 1940

Query: 335  NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
               P+   + S+ D+  KAGR+  +    +EM+  G    A  YV+LI +  K GK    
Sbjct: 1941 GIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEG-LVDAISYVALISTICKLGKGKLG 1999

Query: 395  LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
             +L  EM   GF+PN   F ++ E+ +K    D A  +  ++ +    P
Sbjct: 2000 FQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQELRQQHSSP 2048


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  ++ + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVI-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 147/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   +I  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  +  EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR +      L     +      
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 140/306 (45%), Gaps = 6/306 (1%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I +  +SG L  AI+ ++  KE  FR  F+    +++ + K          Y E   CG
Sbjct: 72  LITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECG 131

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           +  S   +  L+ S+ K G++  A  ++D +   G RP+   F  ++  + K G LD   
Sbjct: 132 YPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGF 191

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +   M+ +G  P   TYS L+       ++D A +L++ M   GL P   T+T L+   
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGH 251

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K   VD+A +I  +M +   S D+   + L+  + K G +  A      M   G++ + 
Sbjct: 252 CKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDK 311

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN---ERHL 606
                L +   K    E+A    +  ++   ++D V YT++++ L  CQ+ ++   E+ L
Sbjct: 312 ITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGL--CQEGRSVDAEKML 369

Query: 607 MAILSA 612
             +LS 
Sbjct: 370 REMLSV 375



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY  M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 180/412 (43%), Gaps = 30/412 (7%)

Query: 116 FDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVIN 175
            D HV++  +     N S +A+ +    +++    +  ++    F+P     ++ + ++ 
Sbjct: 437 LDAHVVLNKV-----NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLC 491

Query: 176 DS---DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI 232
           ++   D +  LF   K  +  VP    Y +L D   +          FDEMV D     +
Sbjct: 492 NASKVDNAFLLFEEMK-SNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNV 550

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
             ++A   +I    KA K+  +   F+ +L   C  +  +Y  L+      G   KA +I
Sbjct: 551 VTYTA---LIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 293 YESMEKGECSL----------DGS-------TYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           Y  M +G   +          DG+       TY  ++  L K+ ++  A  L   M    
Sbjct: 608 YARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEG 666

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P+  ++ +L+D   K G+LD +  V+ +M   G+ P+   Y SLI+   K  +LD AL
Sbjct: 667 CEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLAL 726

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           ++   M      PN  ++T +I+   K GK D A  + + ME  G  P   TY+ +++  
Sbjct: 727 KVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF 786

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
             +G+VD  ++L   M + G  P   TY  L+       L+D A ++L EMK
Sbjct: 787 GKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMK 838



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 160/366 (43%), Gaps = 17/366 (4%)

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
           + L   D LE++   + ++LD+   ++  + + L       G   KA+ I   M      
Sbjct: 418 EKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFI 477

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
            D STY  +I  L  + ++D A  LF+EMK  +  P    +  L+DS  K G L  + K 
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           + EM   G  P+   Y +LI +Y KA K+ +A  L++ M   G  PN   +T +I+ H K
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 423 SGKLDIAMSIFTDMERAGFLPTPS----------------TYSCLLEMHASSGQVDSAMK 466
           SG+++ A  I+  M     +P                   TY  L++    + +V  A  
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYI 525
           L + M+  G  P    Y AL+    K   +D A  +  +M   GY  +V + S ++    
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           KD  +D AL+ L  M  +    N  I  ++ +   K    + A  L+    E     ++V
Sbjct: 718 KDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVV 777

Query: 586 LYTSVL 591
            YT+++
Sbjct: 778 TYTAMI 783



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 166/399 (41%), Gaps = 57/399 (14%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           ++P    Y  +  +L  +   D    LF+EM    S + +     Y  +I    K   L+
Sbjct: 476 FIPDTSTYSKVIGLLCNASKVDNAFLLFEEM---KSNHVVPDVFTYTILIDSFCKVGLLQ 532

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F +++   C  +  +Y  L+  +L       A E++E M    C  +  TY  +I
Sbjct: 533 QARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 313 PSLAKSGRLDAAIKLFQEMK---------------ERNFR-PSFNIFASLVDSMGKAGRL 356
               KSG+++ A +++  M+               + N R P+   + +LVD + KA ++
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 357 DTSMKVY--MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
             +  +   M ++GC   P+  +Y +LI+ + K GKLD A  ++ +M   G+ PN   ++
Sbjct: 653 KEARDLLDVMSVEGC--EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+   K  +LD+A+ + + M      P    Y+ +++     G+ D A +L + M   
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534
           G  P + TYTA++                      G+              K G VD  L
Sbjct: 771 GCHPNVVTYTAMID---------------------GFG-------------KAGKVDKCL 796

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
             +R MG+ G   N    R L   C    L + A  LL+
Sbjct: 797 ELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLD 835



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 143/330 (43%), Gaps = 42/330 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L D L ++        L D M V     N I     Y+ +I    K  KL+ +   F
Sbjct: 639 YGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHI----VYDALIDGFCKVGKLDEAQMVF 694

Query: 259 KKVLDSDCKIDTQSYNVLMT-LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
            K+ +     +  +Y+ L+  LF +K L   A ++   M +  C+ +   Y  MI  L K
Sbjct: 695 TKMSERGYGPNVYTYSSLIDRLFKDKRLDL-ALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G+ D A +L   M+E+   P+   + +++D  GKAG++D  +++  +M   G  P+   
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 378 YVSLIESYAKAGKLDTALRLWDEMR-------IAGFR----------------------- 407
           Y  LI     AG LD A +L DEM+       +AG+R                       
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 408 ---PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST--YSCLLEMHASSGQVD 462
              P    + ++I+S  K+G+L++A+ +  +M             YS L+E  + + +VD
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVD 933

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
            A +LY  M   G  P LS +  L+  L +
Sbjct: 934 KAFELYADMIKRGGIPELSIFFYLVKGLIR 963



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 194/507 (38%), Gaps = 79/507 (15%)

Query: 138 IVEVVNRWKWGPELETQLDKLQFVPKM--VHITQALKVINDSDTSLSLFRWAKRQSWYVP 195
           I +V+     G   +TQ    QF  K+    +   L ++ + +  +  F WA RQ  Y  
Sbjct: 101 ISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQIGYGH 160

Query: 196 GDECYVMLFDVLN-------------ESRDFDGML--SLFDEMVHDSSKNGISLFS---- 236
               Y  L +VL              E RD D  +   L + ++    +NG+   +    
Sbjct: 161 TGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEEL 220

Query: 237 -------------AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
                         YN +++   +AD+L+ +Y   +++ DS   +D  +    + L    
Sbjct: 221 GRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKA 280

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-------F 336
           G   +A  +   +EK E  LD   Y  MI  L ++   + A+     M+  +       +
Sbjct: 281 GRWREALAL---IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTY 337

Query: 337 R----------------------------PSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
           R                            PS  IF SL+ +  ++G    + K+  +M  
Sbjct: 338 RILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGD 397

Query: 369 CGHRPSAPMYVSLIESYAKAGK------LDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           CG +P   +Y  LI       K      L+ A + + EM  A    N    + +      
Sbjct: 398 CGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCG 457

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           +GK + A SI  +M   GF+P  STYS ++ +  ++ +VD+A  L+  M S  + P + T
Sbjct: 458 AGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFT 517

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMG 541
           YT L+    K  L+  A K   EM   G + +V     L+  Y+K   +  A      M 
Sbjct: 518 YTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMML 577

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESA 568
           S G   N      L +   K+   E A
Sbjct: 578 SEGCIPNVVTYTALIDGHCKSGQIEKA 604



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 137/313 (43%), Gaps = 43/313 (13%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLD----SDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
            Y  ++  L KA K++ +    + +LD      C+ +   Y+ L+  F   G   +A  +
Sbjct: 638 TYGALVDGLCKAHKVKEA----RDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  M +     +  TY  +I  L K  RLD A+K+   M E +  P+  I+  ++D + K
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G+ D + ++   M+  G  P+   Y ++I+ + KAGK+D  L L  +M   G  PNF  
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMER-------AGF------------------------ 441
           + ++I     +G LD A  +  +M++       AG+                        
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 442 --LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST--YTALLTLLAKRKLVD 497
             +P    Y  L++    +G+++ A++L+  M+S           Y++L+  L+    VD
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVD 933

Query: 498 VAAKILLEMKTMG 510
            A ++  +M   G
Sbjct: 934 KAFELYADMIKRG 946



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 121/298 (40%), Gaps = 45/298 (15%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y P    Y  L D L + +  D  L +   M+ +S    + +   Y  +I  L K  K +
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVII---YTEMIDGLCKVGKTD 758

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +Y     + +  C  +  +Y  ++  F   G   K  E+   M    C+ +  TY ++I
Sbjct: 759 EAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLI 818

Query: 313 PSLAKSGRLDAAIKLFQEMKE------------------RNFRPSFNI------------ 342
                +G LD A +L  EMK+                  R F  S  +            
Sbjct: 819 NHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPI 878

Query: 343 ---FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA--PMYVSLIESYAKAGKLDTALRL 397
              +  L+DS  KAGRL+ +++++ EM  C    +A   +Y SLIES + A K+D A  L
Sbjct: 879 IPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFEL 938

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI-------FTDMERAGFLPTPSTY 448
           + +M   G  P   +F  +++   +  + + A+ +         D  R GFL +   Y
Sbjct: 939 YADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQMMVDFVREGFLGSSHDY 996


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 190/428 (44%), Gaps = 21/428 (4%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-F 235
           +D +L  F  A       PG   Y  L D L        ++ ++D M     K G+    
Sbjct: 49  ADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNM----RKAGVDPNV 104

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDS----DCKIDTQSYNVLMTLFLNKGLPYKAFE 291
             YN +I+ L + D+++ +    +K+LD      C  D  S+  +++     G   +A  
Sbjct: 105 YTYNLLIRALCQNDRVDAA----RKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARG 160

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
                   +     ++Y  ++ +L    R+     +  EM +R  +P+   + ++VD+  
Sbjct: 161 FLAETVPVQ-----ASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFC 215

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           KA  L  +  +   M   G  P+   + +L++ + + GK+  AL +W  M   G+ P+  
Sbjct: 216 KARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTI 275

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            + ++I      G L  A+  F  M+R   LP  +TYS L++  +++G +D AM ++N M
Sbjct: 276 SYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEM 335

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSV 530
            S+G +P +  YT ++ +L K+ + D A  ++ +M       +    + L+  + D G V
Sbjct: 336 KSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRV 395

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
             AL     M  +G   N+    +L     +   ++ A  ++   + +  ++ LV Y +V
Sbjct: 396 GRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTV 455

Query: 591 LAHLVRCQ 598
           +  L  CQ
Sbjct: 456 INCL--CQ 461



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 137/319 (42%), Gaps = 4/319 (1%)

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           + S+ +EMV    +  +     Y  ++    KA +L M+     +++   C  +  ++  
Sbjct: 188 VFSVVNEMVQRGLQPNVV---TYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTA 244

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+  F   G  + A  ++  M     +    +Y ++I  L   G L  A+  F  MK   
Sbjct: 245 LVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNA 304

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P+   +++LVD    AG LD +M ++ EM+  G +P+  +Y ++I+   K    D A 
Sbjct: 305 LLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAE 364

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            L D+M +    PN   F  +I      G++  A+++F  M R G  P   TY+ LL   
Sbjct: 365 SLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGL 424

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
              G    A  +   M + G    L TY  ++  L +  +   A  +L  M   G   D 
Sbjct: 425 FREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDA 484

Query: 516 -SASDVLMVYIKDGSVDHA 533
            + + ++  Y K+G V  A
Sbjct: 485 FTFNAIIHAYCKEGKVSIA 503



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 160/366 (43%), Gaps = 12/366 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  + D   ++R+     ++   MV       +  F+A   +++   +  K+  +   + 
Sbjct: 207 YTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTA---LVKGFFEDGKVHDALSMWH 263

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++D      T SYNVL+      G    A + + SM++     + +TY  ++   + +G
Sbjct: 264 WMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAG 323

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY--MEMQGCGHRPSAPM 377
            LD A+ ++ EMK    +P+  ++ +++D + K    D +  +   M M  C   P+   
Sbjct: 324 DLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNC--PPNTVT 381

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           + +LI      G++  AL ++  MR  G  PN   +  ++    + G    A ++  +M 
Sbjct: 382 FNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEML 441

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             GF  +  TY+ ++           AM L   M   G++P   T+ A++    K   V 
Sbjct: 442 NNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVS 501

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTN----NFIV 552
           +AA +L +M  +    +V A  +L+  +   G + +A+ +L  M   GI  N    N +V
Sbjct: 502 IAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLV 561

Query: 553 RQLFES 558
           R +F +
Sbjct: 562 RAIFTN 567



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 111/263 (42%), Gaps = 32/263 (12%)

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR- 372
            L  +G +D      QEM+ R    + +   + + +  +AG  D ++K +      G R 
Sbjct: 7   GLPAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRD 66

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P   +Y  L+++  +   +   + ++D MR AG  PN   + ++I +  ++ ++D A  +
Sbjct: 67  PGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKM 126

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSA---------------------------- 464
             +M R G  P   ++  ++      G+V+ A                            
Sbjct: 127 LDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMW 186

Query: 465 --MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVL 521
               + N M   GL+P + TYT ++    K + + +A  IL  M +MG + +V + + ++
Sbjct: 187 EVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALV 246

Query: 522 MVYIKDGSVDHALRWLRFMGSSG 544
             + +DG V  AL    +M   G
Sbjct: 247 KGFFEDGKVHDALSMWHWMVDEG 269


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 170/381 (44%), Gaps = 4/381 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           ++L D+MV    K     F   N +I  L   +K   +     +++   C+ D  +Y  +
Sbjct: 171 VALVDQMVEMGYKPDTVTF---NTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTV 227

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +     +G    A  + + MEKG+   +   Y  +I  L K   +D A  LF +M+ +  
Sbjct: 228 VNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGI 287

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P    + SL+  +   GR   + ++  +M      P+   + SLI+++AK GKL  A +
Sbjct: 288 KPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEK 347

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+DEM      PN   +  +I       +LD A  IFT M     LP   TY+ L++   
Sbjct: 348 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFC 407

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            + +V+  M+L+  M+  GL     TY  L+  L +    D+A KI  +M + G   D+ 
Sbjct: 408 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 467

Query: 517 ASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
              +L+  + K G ++ AL    ++  S +  N +    + E   K    E    L  + 
Sbjct: 468 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL 527

Query: 576 VESAAKVDLVLYTSVLAHLVR 596
                K ++++YT++++   R
Sbjct: 528 SLKGVKPNVIIYTTMISGFCR 548



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 172/381 (45%), Gaps = 39/381 (10%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  + + L +  D D  LSL  +M     +  + +   YN +I  L K   ++ ++  F 
Sbjct: 224 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVI---YNTIIDGLCKYKHMDDAFDLFN 280

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+     K D  +YN L++   N G    A  +   M + + + +  T+  +I + AK G
Sbjct: 281 KMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEG 340

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMG---------------------------- 351
           +L  A KLF EM +R+  P+   + SL++                               
Sbjct: 341 KLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYN 400

Query: 352 -------KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
                  KA R++  M+++ EM   G   +   Y +LI+   +AG  D A +++ +M   
Sbjct: 401 TLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD 460

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  P+   ++++++   K GKL+ A+ +F  ++++   P   TY+ ++E    +G+V+  
Sbjct: 461 GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDG 520

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
             L+ S++  G++P +  YT +++   ++ L + A  +  EMK  G   D    + L+  
Sbjct: 521 WDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRA 580

Query: 524 YIKDGSVDHALRWLRFMGSSG 544
            ++DG    +   ++ M S G
Sbjct: 581 RLRDGDKAASAELIKEMRSCG 601



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 138/297 (46%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I   AK  KL  +   F +++      +  +YN L+  F       +A +I+  M
Sbjct: 328 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 387

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
              +C  D  TY  +I    K+ R++  ++LF+EM +R    +   + +L+  + +AG  
Sbjct: 388 VSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 447

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + K++ +M   G  P    Y  L++   K GKL+ AL +++ ++ +   PN   + ++
Sbjct: 448 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIM 507

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           IE   K+GK++    +F  +   G  P    Y+ ++      G  + A  L+  M   G 
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 567

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHA 533
            P    Y  L+    +      +A+++ EM++ G+  D S   +++  + DG ++ +
Sbjct: 568 LPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKS 624



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 128/279 (45%), Gaps = 13/279 (4%)

Query: 320 RLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           +LD A+ LF EM K R F PS   F+ L+ ++ K  + D  + +  +MQ  G   +   Y
Sbjct: 61  KLDDAVALFGEMVKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTY 119

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             L+  + +  +L  AL +  +M   G+ P+    + ++  +    ++  A+++   M  
Sbjct: 120 SILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVE 179

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G+ P   T++ L+       +   A+ L + M + G +P L TY  ++  L KR  +D+
Sbjct: 180 MGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 239

Query: 499 AAKILLEMKTMGYSVDVSASDVLMVYIKDG-----SVDHALRWLRFMGSSGIRTNNFIVR 553
           A  +L +M+       + A+ V+   I DG      +D A      M + GI+ + F   
Sbjct: 240 ALSLLKKME----KGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 295

Query: 554 QLFESCMKN-ALYESAKPLLETYVESAAKVDLVLYTSVL 591
            L  SC+ N   +  A  LL   +E     ++V + S++
Sbjct: 296 SLI-SCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLI 333



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 119/282 (42%), Gaps = 1/282 (0%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++ ++AK  + D  I L ++M+      +   ++ L++   +  +L  ++ V  +M   G
Sbjct: 87  LLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLG 146

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           + P      SL+  Y    ++  A+ L D+M   G++P+   F  +I       K   A+
Sbjct: 147 YEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAV 206

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           ++   M   G  P   TY  ++      G +D A+ L   M    +   +  Y  ++  L
Sbjct: 207 ALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGL 266

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNN 549
            K K +D A  +  +M+T G   DV   + L+  + + G    A R L  M    I  N 
Sbjct: 267 CKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNV 326

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                L ++  K      A+ L +  ++ +   ++V Y S++
Sbjct: 327 VTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLI 368


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 166/367 (45%), Gaps = 17/367 (4%)

Query: 159 QFVPK--MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP+   +++  AL+V++ S  +  L          VP    Y  +   L ++   D  
Sbjct: 284 SLVPRNHQLYLELALRVVHRSIPAWKL----------VPDKFTYSTVVSALADAGRVDDA 333

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           ++L  EMV D    G+    A+N V+  + +   +  +   F  +    C     +YNVL
Sbjct: 334 VALVHEMVVD----GVVAAEAFNPVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAATYNVL 389

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +   L  G    A  +   ME+ E      TY  ++  L + GRL+ A K+ +EM+ +  
Sbjct: 390 LHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGL 449

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+  +F+ ++    K G +D + +V+  M   G +P+  +Y ++I+  A+ GK+  A  
Sbjct: 450 VPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAEL 509

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+ EM  A   PN   ++ ++  + + G    A+S + DM R G  P   TYS L+    
Sbjct: 510 LFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLC 569

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDV 515
           + G+   AM ++  M   G  P    YT+++       +VD   ++  +M   G +  DV
Sbjct: 570 NVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGMVDAGLRLFYDMLARGDTHPDV 629

Query: 516 SASDVLM 522
              +VL+
Sbjct: 630 ICYNVLL 636



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 135/303 (44%), Gaps = 6/303 (1%)

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           ++ S+   +   D  TY  ++ +LA +GR+D A+ L  EM       +   F  ++ +M 
Sbjct: 301 VHRSIPAWKLVPDKFTYSTVVSALADAGRVDDAVALVHEMVVDGVV-AAEAFNPVLGAML 359

Query: 352 KAGRLDTSMKV--YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + G +  + K+  +M+++GC   PSA  Y  L+      G+   A+ +   M  A   P 
Sbjct: 360 RTGDVTGAAKLFSFMQLKGCA--PSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPG 417

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              +  +++   + G+L+ A  +  +M   G +P    +S ++      G+VD A ++++
Sbjct: 418 VMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWD 477

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDG 528
           +M +AG++P +  Y+A++  LA+   +  A  +  EM       ++ + S ++  Y + G
Sbjct: 478 TMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIG 537

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
               AL +   M   G   N      L          + A  + +  +      D + YT
Sbjct: 538 DSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYT 597

Query: 589 SVL 591
           S++
Sbjct: 598 SMI 600



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 37/221 (16%)

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +++ + A AG++D A+ L  EM + G       F  ++ +  ++G +  A  +F+ M+
Sbjct: 317 YSTVVSALADAGRVDDAVALVHEMVVDGVVAAEA-FNPVLGAMLRTGDVTGAAKLFSFMQ 375

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P+ +TY+ LL      G+  +AM +   M  A + PG+ TY A++  L +   ++
Sbjct: 376 LKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLE 435

Query: 498 VAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A K++ EM++ G    +   S V+  + K G VD A R    M ++GI+ N        
Sbjct: 436 DACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPN-------- 487

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
                                      +VLY++++  L RC
Sbjct: 488 ---------------------------VVLYSAMIDGLARC 501


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 72  AIECYRLTREHKLWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 127

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 128 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 187

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A  LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 188 GVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 247

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 248 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 307

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 308 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 367

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G++  V   +VLM
Sbjct: 368 TGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 410



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 143/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 52  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 111

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 112 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 171

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 172 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTF 231

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 232 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSM 291

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D  + + ++    K+G +D A    + M    IR ++     L     +      
Sbjct: 292 KGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 351

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 352 AEKMLREMLSVGLKPDTGTYTMIVNEFCKKGD 383



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 138/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 88  FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 147

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 148 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 207

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D +  ++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 208 KMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYN 267

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +D+A +    M   
Sbjct: 268 TLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQE 327

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   D     +++  + K G V   
Sbjct: 328 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKG 387

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 388 SKLLKEMQRDG 398



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 122/289 (42%), Gaps = 40/289 (13%)

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLD 392
           N R    +F+ L+ +  ++G L  +++ Y   +   H+   P      ++E   K     
Sbjct: 48  NQRSDIYVFSGLITAYLESGFLRDAIECYRLTRE--HKLWVPFDTCRKVLEHLMKLKYFK 105

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
                ++E+   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+
Sbjct: 106 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 165

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +   G +D   +L ++M ++G++P + TY+ L+  L K   +D A  +  EM   G  
Sbjct: 166 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLV 225

Query: 513 VD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            + V+ + ++  + K+G VD A+                I +Q+        L +S  P 
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAME---------------IYKQM--------LSQSLLP- 261

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF 620
                      DL+ Y +++  L +  D +    L+  +S    K   F
Sbjct: 262 -----------DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 299


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 148/320 (46%), Gaps = 5/320 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           + DEMVH   +       AY  ++    KA +L M+     +++   C  + Q++ VL+ 
Sbjct: 249 VVDEMVHRGLRPDTV---AYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVK 305

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            F + G  + A  ++  M     +    +Y ++I  L   G L  A+ +F  M + +  P
Sbjct: 306 GFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLP 365

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               +++L+D   KAG LD +M ++ +M   G +P+  +Y ++++   K    D A  L 
Sbjct: 366 DVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLI 425

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           D+M +    PN   F  +I S    G+   A+++F  M R G  P   TY+ LL      
Sbjct: 426 DKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFRE 485

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SA 517
           G  + A+++   M + G    L +Y   ++ L + +++  A  +L  M   G   D  + 
Sbjct: 486 GNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTF 545

Query: 518 SDVLMVYIKDGSVDHALRWL 537
           + ++  Y K+G+V  A  W+
Sbjct: 546 NAIIHAYCKEGNV-RAAAWM 564



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 181/425 (42%), Gaps = 14/425 (3%)

Query: 177 SDTSLSLFRWAKRQ-SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL- 234
           +D +L  F  A+       P    Y  L D L        ++ ++D M     K G+   
Sbjct: 106 ADRALKTFYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNM----RKAGVEPN 161

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              YN +I+ L + D++  +     ++    C+ D  S+  +++         +A  I  
Sbjct: 162 VYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEARGILA 221

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M        G++Y  ++ +L    R+     +  EM  R  RP    + S+V +  KA 
Sbjct: 222 EMTP-----VGASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKAR 276

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            L  +  +   M   G  P+   +  L++ +   GK+  AL +W+ M   G+ P+   + 
Sbjct: 277 ELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYN 336

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I      G L  A+ +F+ M ++  LP   TYS L++  + +G +D AM ++N MT+A
Sbjct: 337 VLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNA 396

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHA 533
           G +P +  YT ++ +L K+ + D A  ++ +M       +    + L+  + D G    A
Sbjct: 397 GCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRA 456

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L     M   G   N+    +L     +    E A  +L   +    ++ LV Y + ++ 
Sbjct: 457 LNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFELSLVSYNTTISG 516

Query: 594 LVRCQ 598
           L  CQ
Sbjct: 517 L--CQ 519



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 35/272 (12%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
            +E  +  LA +G LD      QEM+ R          + + +  +AG  D ++K +   
Sbjct: 57  AHEATVRRLAAAGDLDGVQYTLQEMRLRGVACPEGALVAAICAFARAGAADRALKTFYRA 116

Query: 367 Q---GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
           +   GC   P+  +Y  L+++  +   +   + ++D MR AG  PN   + ++I++  ++
Sbjct: 117 RHDLGCA-APTVRVYNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKALCQN 175

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLE----------------------------MH 455
            ++  A  +  +M R G  P   +++ ++                             +H
Sbjct: 176 DRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEARGILAEMTPVGASYNAVVH 235

Query: 456 ASSGQ--VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
           A  GQ  +     + + M   GLRP    YT+++    K + + +A  IL  M T G   
Sbjct: 236 ALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVP 295

Query: 514 DVSASDVLMV-YIKDGSVDHALRWLRFMGSSG 544
           +V    VL+  +  DG V  AL    +M + G
Sbjct: 296 NVQTFTVLVKGFFDDGKVHDALGMWNWMVAEG 327


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 142/273 (52%), Gaps = 2/273 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ESM 296
           YN +I   +++  LE +   F++++ S+C+ D  +YN ++++    G   +A  ++ E +
Sbjct: 296 YNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELV 355

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           EKG    D  TY  ++ + AK G +D      +E+ +  F+ +   + +++   GK GRL
Sbjct: 356 EKGFMP-DAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRL 414

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ +Y EM+  G  P A  Y  +I+S  K  K+  A ++ ++M  AG +P    F+ +
Sbjct: 415 DLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSAL 474

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++AK G+   A   F  M  +G  P    Y  +L++ A SG+ +  ++LY +M +   
Sbjct: 475 ICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNY 534

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
           RP    Y  LL  LAK    +   +I+ +M+ +
Sbjct: 535 RPDDDMYQVLLVALAKEDKCEEIEEIIQDMELL 567



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 149/323 (46%), Gaps = 17/323 (5%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           L D +++ R  D  L  F+ +++  SK+G             LA    L++ +    +V 
Sbjct: 243 LLDTMHD-RGIDPDLVSFNTLINARSKSGC------------LAAGVALDLLF----EVR 285

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
            S  + D  +YN L++          A  ++E M   EC  D  TY  M+    + G+ +
Sbjct: 286 QSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAE 345

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A +LF E+ E+ F P    + SL+ +  K G +D       E+   G + +   Y ++I
Sbjct: 346 EAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMI 405

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
             Y K G+LD A+ L+DEMR  G  P+   +T++I+S  K  K+  A  +  DM  AG  
Sbjct: 406 HMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLK 465

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           PT   +S L+  +A  G+   A K ++ M ++G++P    Y  +L + A+    +   ++
Sbjct: 466 PTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRL 525

Query: 503 LLEMKTMGYSVDVSASDVLMVYI 525
              M    Y  D     VL+V +
Sbjct: 526 YRTMMNDNYRPDDDMYQVLLVAL 548



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 153/700 (21%), Positives = 274/700 (39%), Gaps = 95/700 (13%)

Query: 179  TSLSLF-RWAKRQSWYVPGDEC--YVMLFDVLNESRDFDGMLSLFDEMVH---DSSKNGI 232
            TS+S + ++++R     PG  C  Y  L   L E+  F     +F +M     ++SKN  
Sbjct: 654  TSISAYEQYSQRLMLKYPGQNCNLYEHLITCLVEAELFSEACQVFCDMQFIGIEASKN-- 711

Query: 233  SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
                 Y  +I    K    E ++      L S   ++  S  V++         ++  EI
Sbjct: 712  ----IYESIISTYCKLGFPETAHGLMDDALQSGIPLNILSCRVIIIEAYGNIKLWQQAEI 767

Query: 293  YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
                 +    +D   +  +I + A+SG  + A  +F  M +    P+ +    ++ ++  
Sbjct: 768  LVKGLRQASGIDRRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIV 827

Query: 353  AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD------------- 399
             GRLD    V  E+Q    + S    + +++++AKAG +   +++++             
Sbjct: 828  DGRLDELYVVVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHL 887

Query: 400  ----------------------EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
                                  EM  AGF+P+  +F  ++  +  +G  D    ++  + 
Sbjct: 888  YRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSIL 947

Query: 438  RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             AG  P   TY+ L+ M+  S + +    L N M   GL P L +Y +LL   AK +L +
Sbjct: 948  EAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELRE 1007

Query: 498  VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
             A ++  EM++  Y ++ S   ++M +Y   G+   A   L  M   GI      +  L 
Sbjct: 1008 QADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILM 1067

Query: 557  ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ------------------ 598
             S         A+ +L +   S+ +V  + Y++V    ++                    
Sbjct: 1068 TSYGTAGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVE 1127

Query: 599  -DEQNERHLMAILSATKHKAHAFL-------CGLFTGP----EQRKQPVLSFVREFFHGI 646
             D Q     +   S  +  A A L       CG F  P     +R   +LS +  +   +
Sbjct: 1128 PDHQVWTCFIRAASLCEQTADAILLLKSLQDCG-FDLPIRLLTERTPSLLSEIANYLEEL 1186

Query: 647  DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRN 706
            +  LE+ AA  FVN + + L        A  ++++A E  ++   +       W  D R 
Sbjct: 1187 E-ALEDSAALNFVNAVEDLLWAFECRATASRIFQLAVERSIYRDNVFRVAQKDWGADFRK 1245

Query: 707  LSVGAALIAVMHTLHRFRKRMLYYG-VVPRRIKLVTGP------TLKIVIAQMLSSVESP 759
            LS GAAL+ +   L   +   L      P+ + LVTG       +L+  I   L  + SP
Sbjct: 1246 LSAGAALVGLTLWLDHMQDASLQGSPESPKSVVLVTGEGEYNMVSLRKTIRAYLLEMGSP 1305

Query: 760  F-----EVSKVVLRAPGDSVMEWFK-KPIVQQFLLNEIPS 793
            F        + V++A   S+  W K  P      L + P+
Sbjct: 1306 FLPCRARSGRFVVKAY--SLKMWLKDSPFCMDLELKDAPA 1343



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 304 DGSTYEL---MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL--DT 358
           +G+T ++   M+   A+SGR D A +L   M +R   P    F +L+++  K+G L    
Sbjct: 217 EGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGV 276

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++ +  E++  G RP    Y +LI + +++  L+ A+ +++EM  +  RP+   +  ++ 
Sbjct: 277 ALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVS 336

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
            H + GK + A  +F ++   GF+P   TY+ LL   A  G VD        +  AG + 
Sbjct: 337 VHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKK 396

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
              TY  ++ +  K   +D+A  +  EM+ +G + D     V++  + K   +  A + L
Sbjct: 397 NEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVL 456

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             M  +G++        L  +  K      A+   +  + S  K D + Y  +L    R
Sbjct: 457 EDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFAR 515



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 148/329 (44%), Gaps = 7/329 (2%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQS   P    Y  L    ++S + +  +++F+EM+    +  +     YN ++    + 
Sbjct: 285 RQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDL---WTYNAMVSVHGRC 341

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K E +   F ++++     D  +YN L+  F  +G   K     E + K     +  TY
Sbjct: 342 GKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITY 401

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             MI    K GRLD A+ L+ EM+     P    +  ++DS+GK  ++  + KV  +M  
Sbjct: 402 NTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMAD 461

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G +P+   + +LI +YAK G+   A + +D M  +G +P+   + ++++  A+SG+ + 
Sbjct: 462 AGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEK 521

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
            + ++  M    + P    Y  LL   A   + +   ++   M    L   +S    + T
Sbjct: 522 MLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDME---LLCQMS-LGVIST 577

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           +L K + V    K+L +    GY  D  +
Sbjct: 578 ILIKARCVSQGGKLLKKACLQGYKPDAKS 606



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 125/264 (47%), Gaps = 5/264 (1%)

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R+  P+    A ++  +G+A +   + +V++   G G   +  ++ +++  YA++G+ D 
Sbjct: 182 RSTAPASRAVAVVLGVLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDD 239

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL--DIAMSIFTDMERAGFLPTPSTYSCL 451
           A +L D M   G  P+   F  +I + +KSG L   +A+ +  ++ ++G  P   TY+ L
Sbjct: 240 ARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTL 299

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +   + S  ++ A+ ++  M ++  RP L TY A++++  +    + A ++  E+   G+
Sbjct: 300 ISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGF 359

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D V+ + +L  + K+G+VD        +  +G + N      +     K    + A  
Sbjct: 360 MPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVG 419

Query: 571 LLETYVESAAKVDLVLYTSVLAHL 594
           L +         D V YT ++  L
Sbjct: 420 LYDEMRAVGCTPDAVTYTVMIDSL 443



 Score = 39.7 bits (91), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 89/209 (42%), Gaps = 7/209 (3%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            P    Y ++ D L +         + ++M     K  +  FSA   +I   AK  +   
Sbjct: 430 TPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSA---LICAYAKGGRRAD 486

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F  ++ S  K D  +Y V++ +F   G   K   +Y +M       D   Y++++ 
Sbjct: 487 AEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLV 546

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +LAK  + +   ++ Q+M E   + S  + +++   + KA  +    K+  +    G++P
Sbjct: 547 ALAKEDKCEEIEEIIQDM-ELLCQMSLGVISTI---LIKARCVSQGGKLLKKACLQGYKP 602

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMR 402
            A    S++ +Y    K +  L L + +R
Sbjct: 603 DAKSLWSIMNAYVMTEKHEEGLSLLECIR 631


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 190/421 (45%), Gaps = 7/421 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
           D +++LF+   R S  +PG   +   F  +  ++ F+ +L    ++      NGI+    
Sbjct: 70  DDAIALFQEMIR-SRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQL----ELNGIAHNIY 124

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             N +I    +  K   +Y    KV+    + DT ++N L+     +G   KA  + + M
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRM 184

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C  D  TY  ++  + +SG    A  + ++M+ERN +     +++++DS+ + G +
Sbjct: 185 VENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCI 244

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ ++ EM+  G + S   Y SL+    KAGK +    L  +M      PN   F ++
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K GKL  A  ++ +M   G  P   TY+ L++ +    ++  A  + + M     
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P + T+T+L+      K VD   K+   +   G   + V+ S ++  + + G +  A  
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 424

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             + M S G+  +      L +    N   E A  + E   +S   + +V+YT+++  + 
Sbjct: 425 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 484

Query: 596 R 596
           +
Sbjct: 485 K 485



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 179/409 (43%), Gaps = 40/409 (9%)

Query: 162 PKMVHITQALKVINDS-DTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSL 219
           P MV     +  I  S DTSL+     K +   V  D   Y  + D L      D  +SL
Sbjct: 191 PDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250

Query: 220 FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           F EM     K+ +     YN +++ L KA K        K ++  +   +  ++NVL+ +
Sbjct: 251 FKEMETKGIKSSVV---TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           F+ +G   +A E+Y+ M     S +  TY  ++       RL  A  +   M      P 
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              F SL+       R+D  MKV+  +   G   +A  Y  L++ + ++GK+  A  L+ 
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           EM   G  P+   + ++++    +GKL+ A+ IF D++++        Y+ ++E     G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK-----------RKL------------- 495
           +V+ A  L+ S+   G++P + TYT +++ L K           RK+             
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYN 547

Query: 496 -----------VDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHA 533
                      +  +AK++ EMK+ G+S D S+  +++  +  G +D +
Sbjct: 548 TLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGELDKS 596



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 166/362 (45%), Gaps = 1/362 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + +N +I  L    K+  +     +++++ C+ D  +YN ++      G    AF++   
Sbjct: 159 TTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRK 218

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+     D  TY  +I SL + G +DAAI LF+EM+ +  + S   + SLV  + KAG+
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +    +  +M      P+   +  L++ + K GKL  A  L+ EM   G  PN   +  
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++ +    +L  A ++   M R    P   T++ L++ +    +VD  MK++ +++  G
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHAL 534
           L     TY+ L+    +   + +A ++  EM + G   DV    +L+  + D G ++ AL
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                +  S +     +   + E   K    E A  L  +      K +++ YT +++ L
Sbjct: 459 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 518

Query: 595 VR 596
            +
Sbjct: 519 CK 520


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 150/343 (43%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 72  AIECYRLTREHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 127

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +   M   
Sbjct: 128 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLAS 187

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 188 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 247

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I  
Sbjct: 248 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLING 307

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 308 CCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPD 367

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K   V   +K+L EM+  G+   V   +VLM
Sbjct: 368 ARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLM 410



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 141/332 (42%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+  +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 52  DIYVFSGLIAAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 111

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 112 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRX 171

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD    L   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 172 GDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 231

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 232 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSV 291

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A    + M    IR +      L     +      
Sbjct: 292 KGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVD 351

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 352 AEKMLREMLSVGLKPDARTYTMIINEFCKXGD 383



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 137/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 88  FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 147

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD    L   M     +P    ++ L++ + K  
Sbjct: 148 AITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKES 207

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 208 KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYN 267

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L+      G +DSA +    M   
Sbjct: 268 TLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQE 327

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHA 533
            +R     YTAL++   +      A K+L EM ++G   D  + + ++  + K G V   
Sbjct: 328 NIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXG 387

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 388 SKLLKEMQRDG 398



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 142/319 (44%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  +E  F   F+    +++ + K     
Sbjct: 46  KGTQRSDIYVFSGLIAAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFK 105

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 106 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 165

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 166 NGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 225

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 285

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L   C K    +SA    +  ++   ++D V YT++++    
Sbjct: 286 IDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISG--X 343

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 344 CQEGRSVDAEKMLREMLSV 362


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 194/432 (44%), Gaps = 9/432 (2%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H+ + L+  +D  +SL  F+       +      Y  + D L  + + DG+  L  +M  
Sbjct: 43  HVVKVLRQEHDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQMKL 102

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
           ++      LF     VI+   +++  E     F ++ +  C+   + YN+++   L++ L
Sbjct: 103 ENVPCSQELFQF---VIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNL 159

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
                 +Y +M+      +  TY +++ +L ++G++D A KL  EM  +   P    + +
Sbjct: 160 FKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTT 219

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           ++ SM K G +D + ++ M+ +     P  P+Y +LI    K  +   A  L +EM   G
Sbjct: 220 VISSMCKLGDVDKARELAMKFE-----PVVPVYNALIHGVCKECRFKEAFDLMNEMVDRG 274

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             PN   ++ +I   +  G +++++++F  M   G  P   T++ L++     G+V  A+
Sbjct: 275 VDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAV 334

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVY 524
            L+N M   G+ P +  Y  L+  L     +D A  +  +M+      +V+  S ++  +
Sbjct: 335 GLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGF 394

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
            K G +  A      M + G R N  +   + +   + ++++ A  L++  +       +
Sbjct: 395 AKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTV 454

Query: 585 VLYTSVLAHLVR 596
           + + + +  L R
Sbjct: 455 ITFNNFIKGLCR 466



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 190/422 (45%), Gaps = 18/422 (4%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           N  +  L +F +  R+    P  + Y ++ D L     F  + +L++ M  +  +  +  
Sbjct: 123 NLGEQGLKMF-YRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVF- 180

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              YN +++ L +  K++ +     ++ +  C  D  SY  +++     G   KA E+  
Sbjct: 181 --TYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAM 238

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
             E          Y  +I  + K  R   A  L  EM +R   P+   +++++  +   G
Sbjct: 239 KFEPVV-----PVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMG 293

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            ++ S+ V+  M   G RP+   + SLI+ +   G++  A+ LW+ M   G  PN   + 
Sbjct: 294 NVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYN 353

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I      G +D A+S++  ME+    P  +TYS ++   A SG + SA + +N M + 
Sbjct: 354 TLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINC 413

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHA 533
           G RP +  YT ++ +L +  + D A  ++  M + G    V + ++ +    + G V+ A
Sbjct: 414 GCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWA 473

Query: 534 LRWL----RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +  L    ++     IRT N ++  LF +   NA  E A  L+    E   + D V Y +
Sbjct: 474 MNVLDQMEKYECLPNIRTYNELLDGLFRA---NAFRE-ACGLIRELEERKVEFDCVTYNT 529

Query: 590 VL 591
           ++
Sbjct: 530 IM 531



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 123/294 (41%), Gaps = 8/294 (2%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TYE MI  L ++  +D    L Q+MK  N   S  +F  ++    ++   +  +K++  +
Sbjct: 76  TYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRI 135

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G  PS  +Y  ++++            L++ M+  G  PN   + +++++  ++GK+
Sbjct: 136 REFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKV 195

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           D A  +  +M   G  P   +Y+ ++      G VD A +L     +    P +  Y AL
Sbjct: 196 DGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKAREL-----AMKFEPVVPVYNAL 250

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGI 545
           +  + K      A  ++ EM   G   +V +   ++  + D G+V+ +L     M   G 
Sbjct: 251 IHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGC 310

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           R N      L +          A  L    +      ++V Y +++  L  C D
Sbjct: 311 RPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGL--CSD 362



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/294 (17%), Positives = 119/294 (40%), Gaps = 39/294 (13%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L   L    + D  +S++++M  DS +  ++    Y+ +I   AK+  L  +
Sbjct: 347 PNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVT---TYSTIIYGFAKSGDLVSA 403

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              + K+++  C+ +   Y  ++ +     +  +AF++ ++M    C     T+   I  
Sbjct: 404 CETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKG 463

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ------G 368
           L ++GR++ A+ +  +M++    P+   +  L+D + +A     +  +  E++       
Sbjct: 464 LCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFD 523

Query: 369 C-----------------------------GHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
           C                             G +       + + +Y K GK+ TA+++ D
Sbjct: 524 CVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLD 583

Query: 400 EMRIAG-FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            +     FR +    T+I+         + A+    +M + G  P  +T++ L+
Sbjct: 584 NISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNVLV 637


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 203/468 (43%), Gaps = 22/468 (4%)

Query: 159 QFVPKMVHITQALKVINDSDTS----LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFD 214
           QF P +V     ++V++   TS    L LFRWA+ Q  +   +  +  + ++L ++    
Sbjct: 73  QFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMR 132

Query: 215 ------------GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
                        M  + D ++     + +S+    + +I   +K   +E     F K++
Sbjct: 133 SAYWVMERVINANMHRIVDVLIGGCVSSEVSV-KILDLLIWVYSKKSMVEQCLSVFDKMI 191

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLAKSGR 320
            S    D ++ N ++ +  +K L  KA E+Y +M  GE  +  +  TY  ++ S  K G+
Sbjct: 192 KSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTM--GEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +   + L  EM+ R   P+   +  L++ + K G  + +  +  EM   G + SA  Y  
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 309

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI  Y   G L  AL L +EM + G  P    +   I    K G++  AM   +DM    
Sbjct: 310 LIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANN 369

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
            LP   +Y+ L+  +   G +  A  L++ + S  L P + TY  LL  L ++  ++VA 
Sbjct: 370 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQ 429

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++ +EM   G + D+    +L+    K GS+  A  +   M   G+  +++         
Sbjct: 430 QLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGE 489

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           +K      A  L E  +      DL++Y  V+  L +  + +    L+
Sbjct: 490 LKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELL 537



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 133/304 (43%), Gaps = 3/304 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R  +  P    Y  L D L    + +    L  EM+++     I     Y  ++    K 
Sbjct: 401 RSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIV---TYTILVNGSCKM 457

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             L M+   F ++L    ++D+ +Y   +   L  G   +AF + E M       D   Y
Sbjct: 458 GSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIY 517

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            +++  L K G L+ A +L Q+M      P +  + S++ +  + GRL    +++ EM  
Sbjct: 518 NVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLS 577

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  PS   Y  LI  +A  G+L+ A   + EM+  G  PN   +  +I    K  ++D 
Sbjct: 578 KGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQ 637

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A + F +M   G  P   +Y+ L+  + + G    A+ LY  M   G++P   T++ALL 
Sbjct: 638 AYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLK 697

Query: 489 LLAK 492
            L K
Sbjct: 698 QLGK 701



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 116/571 (20%), Positives = 223/571 (39%), Gaps = 83/571 (14%)

Query: 120 VMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKL---QFVPKMVHITQALKVIND 176
           V++GG     ++   +  ++ V ++     +  +  DK+   +  P + +  + L+++ D
Sbjct: 152 VLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRD 211

Query: 177 SD---TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH-DSSKNGI 232
            D    ++ ++R    +    P    Y  L D   +       L L  EM     + N +
Sbjct: 212 KDLMSKAVEVYR-TMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDV 270

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           +    YN +I  L+K  + E +     ++L +  K+   +YN L+  + NKG+  +A  +
Sbjct: 271 T----YNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSL 326

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK-------------------------- 326
            E M     S   +TY   I  L K GR+  A++                          
Sbjct: 327 QEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR 386

Query: 327 ---------LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
                    LF E++     P+   + +L+D + + G L+ + ++ +EM   G  P    
Sbjct: 387 LGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVT 446

Query: 378 YVSLIESYAKAGKLDTALRLWDEM--------------RIA------------------- 404
           Y  L+    K G L  A   +DEM              RI                    
Sbjct: 447 YTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEML 506

Query: 405 --GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             GF P+  ++ ++++   K G L+ A  +   M   G +P   TY+ ++  H  +G++ 
Sbjct: 507 AKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLR 566

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
              +++  M S GL P + TYT L+   A +  ++ A     EM+  G   +V   + L+
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626

Query: 523 VYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             + K   +D A  +   M   GI  N +    L         ++ A  L +  ++   +
Sbjct: 627 NGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQ 686

Query: 582 VDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
            D   ++++L  L +    Q  R L ++L +
Sbjct: 687 PDSCTHSALLKQLGKDCKLQAVRQLESLLDS 717


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 188/447 (42%), Gaps = 47/447 (10%)

Query: 194  VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            VP    + +L     ++ +F+   +LF+EMV  + +  +  F A   +I  L KA ++E 
Sbjct: 564  VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGA---LIDGLCKAGQVEA 620

Query: 254  SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
            +      + +     +  +YN L+      G   +A +  E M    C  D  TY  ++ 
Sbjct: 621  ARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVY 680

Query: 314  SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            +L ++ R D A++L  E+K   + P    +  LVD + K+G+ + ++ V  EM G GH P
Sbjct: 681  ALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHP 740

Query: 374  SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR---PNFGLFTMIIESHAKSGKLDIAM 430
                Y +LI+S  KAG L+ A RL  +M     R   PN   ++++I    K G++D A 
Sbjct: 741  DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEAR 800

Query: 431  SIFTDMERAG------------FL---------------------------PTPSTYSCL 451
             +  +M R              FL                           P   T+S L
Sbjct: 801  ELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTL 860

Query: 452  LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
            ++     GQ D A  +++ M + G  P + TY  L+  L K   ++ A  ++  M   G 
Sbjct: 861  IDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGV 920

Query: 512  SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
            + DV    VL+  + K   VD AL  L  M S G   N      + +  C  +   E+ +
Sbjct: 921  TPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQ 980

Query: 570  PLLETYVESAAKVDLVLYTSVLAHLVR 596
               +  ++     D + Y +++  L R
Sbjct: 981  MFDDMTLKHGLAPDKITYCTLIDGLFR 1007



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 186/457 (40%), Gaps = 58/457 (12%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS-----TYELMIPSLAKSGRLDAAIKL 327
           YN+++      G   +A EI+    +GE + DG      TY  +I  L KS  L A ++L
Sbjct: 183 YNIVLQSLCRAGETARALEIF----RGEMARDGVAPTIVTYNTIINGLCKSNELGAGMEL 238

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F+E+ ER   P    + +L+DS+ KAG L+ + +++ +M      P+   Y  LI    K
Sbjct: 239 FEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCK 298

Query: 388 AGKLDTALRLWDEM--RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL--- 442
            G++D A  L  EM  +     PN   +   ++   K      A  +   + R G L   
Sbjct: 299 VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSL-RDGSLRVS 357

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   T+S L++     GQ+D A  +++ M + G  P + TY AL+  L K   ++ A  +
Sbjct: 358 PDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAM 417

Query: 503 LLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CM 560
           +  M   G + DV    VL+  + K   VD AL  L  M S G   N      + +  C 
Sbjct: 418 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 477

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF 620
            +   E+ +   +  ++     D + Y +++  L R                        
Sbjct: 478 SDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFR------------------------ 513

Query: 621 LCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWK 680
                TG   + + +L  + +               Y  N  +N L  +G ++RA  V+ 
Sbjct: 514 -----TGRAGQAEALLDAMPD------------PDTYAFNCCINGLSKLGDVSRALQVYN 556

Query: 681 VAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVM 717
              E +L P  + F+  IA +    N    +AL   M
Sbjct: 557 RMLELELVPDKVTFNILIAGACKAGNFEQASALFEEM 593



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 120/518 (23%), Positives = 198/518 (38%), Gaps = 75/518 (14%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           + Q+L    ++  +L +FR    +    P    Y  + + L +S +    + LF+E+V  
Sbjct: 186 VLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVER 245

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
                +     YN +I  L KA  LE +      +    C  +  +Y+VL+      G  
Sbjct: 246 GHHPDV---VTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRI 302

Query: 287 YKAFEIYESMEKGECSL-------------------------------DGS--------T 307
            +A E+ + M +  C +                               DGS        T
Sbjct: 303 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 362

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           +  +I  L K G++D A  +F +M    + P+   + +LV+ + KA +++ +  +   M 
Sbjct: 363 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV 422

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P    Y  L++++ KA ++D AL L   M   G  PN   F  II+   KS +  
Sbjct: 423 DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSG 482

Query: 428 IAMSIFTDME-----------------------RAG-------FLPTPSTYS--CLLEMH 455
            A  +F DM                        RAG        +P P TY+  C +   
Sbjct: 483 EAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGL 542

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           +  G V  A+++YN M    L P   T+  L+    K    + A+ +  EM       DV
Sbjct: 543 SKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 602

Query: 516 SASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
                L+  + K G V+ A   L  MG+ G+  N      L     K+   E A   LE 
Sbjct: 603 MTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEE 662

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
            V S    D + Y S++  L R     +   L++ L +
Sbjct: 663 MVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKS 700



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 94/444 (21%), Positives = 192/444 (43%), Gaps = 55/444 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL-------- 251
           Y +L D   ++   D  L L   M   +S+        +N +I  L K+D+         
Sbjct: 433 YSVLVDAFCKASRVDEALELLHGM---ASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFD 489

Query: 252 -----------EMSYCCF-------------KKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
                      +++YC               + +LD+    DT ++N  +      G   
Sbjct: 490 DMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVS 549

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A ++Y  M + E   D  T+ ++I    K+G  + A  LF+EM  +N +P    F +L+
Sbjct: 550 RALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALI 609

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           D + KAG+++ +  +   M   G  P+   Y +L+    K+G+++ A +  +EM  +G  
Sbjct: 610 DGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCV 669

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+   +  ++ +  ++ + D A+ + ++++  G+ P   TY+ L++    SGQ + A+ +
Sbjct: 670 PDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITV 729

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT----------MGYSVDVSA 517
              M   G  P + TY  L+  L K   ++ A ++  +M +          + YSV ++ 
Sbjct: 730 LEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLING 789

Query: 518 SDVLMVYIKDGSVDHALRWLRFM--GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
                   K G +D A   ++ M   S  +  N        +   K ++   A  L+ + 
Sbjct: 790 ------LCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSL 843

Query: 576 VESAAKV--DLVLYTSVLAHLVRC 597
            + + +V  D V +++++  L +C
Sbjct: 844 RDGSLRVSPDTVTFSTLIDGLCKC 867



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 136/315 (43%), Gaps = 13/315 (4%)

Query: 200  YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
            Y  L D L ++ D +    L  +M    S+  +     Y+ +I  L K  +++ +    +
Sbjct: 745  YNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQ 804

Query: 260  KVLDSDCKI--DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE--CSLDGSTYELMIPSL 315
            +++   C +  +  +YN  +     + +  +A E+  S+  G    S D  T+  +I  L
Sbjct: 805  EMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGL 864

Query: 316  AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
             K G+ D A  +F +M    + P+   +  L++ + K  +++ +  +   M   G  P  
Sbjct: 865  CKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDV 924

Query: 376  PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
              Y  L++++ KA  +D AL L   M   G  PN   F  II+   KS +   A  +F D
Sbjct: 925  ITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDD 984

Query: 436  ME-RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M  + G  P   TY  L++    +G    A  L ++M      P   TY     +    K
Sbjct: 985  MTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAM------PDPDTYAFNCCINGLSK 1038

Query: 495  LVDVAAKI--LLEMK 507
            L DV+  +  +LE++
Sbjct: 1039 LGDVSRALHRMLELE 1053



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 123/289 (42%), Gaps = 18/289 (6%)

Query: 180  SLSLFRWAKRQSWYV-PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY 238
            +  L R  +  S  V P    +  L D L +    D   ++FD+M+   +   +     Y
Sbjct: 836  ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMI---AGGYVPNVVTY 892

Query: 239  NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
            N ++  L K DK+E ++   + ++D     D  +Y+VL+  F       +A E+   M  
Sbjct: 893  NVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMAS 952

Query: 299  GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK-ERNFRPSFNIFASLVDSM---GKAG 354
              C+ +  T+  +I  L KS +   A ++F +M  +    P    + +L+D +   G AG
Sbjct: 953  RGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAG 1012

Query: 355  RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            + +  +    +       P    +   I   +K G +  AL    E+ +    P+   F 
Sbjct: 1013 QAEVLLDAMPD-------PDTYAFNCCINGLSKLGDVSRALHRMLELELV---PDKVTFN 1062

Query: 415  MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
            ++I    K+G  + A ++F +M      P   T+  L++    +GQV++
Sbjct: 1063 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEA 1111



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 304  DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
            D  T+ ++I    K+G  + A  LF+EM  +N +P    F +L+D + KAG+++ +  +
Sbjct: 1057 DKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDI 1115


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 181/395 (45%), Gaps = 12/395 (3%)

Query: 196 GDECYVMLFDVLNESRDFDGML--SLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLE 252
           G E  ++ F+ L  +R   G +  +L  E++++  ++GI      YN +I   ++   LE
Sbjct: 227 GCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLE 286

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   +  ++   C+ D  +YN +++++   G+  +A  +++ +E      D  TY  ++
Sbjct: 287 EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLL 346

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            + A+ G +D   ++ ++M +  F      + +++   GK G+ D + ++Y +M+  G  
Sbjct: 347 YAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRS 406

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P A  Y  LI+S  KA  +  A  +  EM  A  +P    F+ +I  +AK+GK   A   
Sbjct: 407 PDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEET 466

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  M R+G  P    YS +L++     +   AMKLY  M     +P  + Y  +L +L K
Sbjct: 467 FDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 526

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
               +   K++ +M+ +     +++  +  + +K    DHA   LR   S G   + +  
Sbjct: 527 ENREEDVHKVVKDMEEL---CGMNSQVICSILVKGECFDHAANMLRLAISQGCELDQYGK 583

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
            + F       L+   + L E  +    K+D   Y
Sbjct: 584 ARDF------GLFCGTEELFEGLLSKECKLDRSFY 612



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 176/426 (41%), Gaps = 42/426 (9%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L ++ W   + WY P       +  VL ++                   N  +L     
Sbjct: 146 ALEVYEWLNLRHWYSPNARMLATILSVLGKA-------------------NQEAL----- 181

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
             ++  A+A+    +                Q YN +M ++   G   K  E+ + M   
Sbjct: 182 -AVEIFARAEAASGN--------------TVQVYNAMMGVYARTGRFTKVQELLDLMRSR 226

Query: 300 ECSLDGSTYELMIPSLAKSGRL--DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            C  D  ++  +I +  KSG +  + AI+L  E++    +P    + +L+ +  +   L+
Sbjct: 227 GCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLE 286

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++KVY +M     +P    Y ++I  Y + G    A RL+ ++   GF P+   +  ++
Sbjct: 287 EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLL 346

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            + A+ G +D    I  DM + GF     TY+ ++ M+   GQ D A +LY+ M  +G  
Sbjct: 347 YAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRS 406

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P   TYT L+  L K  ++  AA+++ EM        +     L+  Y K G    A   
Sbjct: 407 PDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEET 466

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              M  SGI+ ++     + +  ++      A  L +  V  + K D  LY  +L  L +
Sbjct: 467 FDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 526

Query: 597 CQDEQN 602
              E++
Sbjct: 527 ENREED 532



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 115/556 (20%), Positives = 220/556 (39%), Gaps = 53/556 (9%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN ++ ++  +G    AF++Y  M+    S D  TY ++I SL K+  +  A ++ 
Sbjct: 373 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 432

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM     +P+   F++L+    KAG+   + + +  M   G +P    Y  +++   + 
Sbjct: 433 SEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRF 492

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER---------- 438
            +   A++L+ EM +  F+P+  L+ +++    K  + +    +  DME           
Sbjct: 493 NESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVIC 552

Query: 439 ------------AGFLPTPSTYSCLLEMHASS---GQVDSAMKLYNSMTSAGLRPGLSTY 483
                       A  L    +  C L+ +  +   G      +L+  + S   +   S Y
Sbjct: 553 SILVKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTEELFEGLLSKECKLDRSFY 612

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGS 542
             ++ +         A K+L  MK  G    ++   +LMV Y   G  + A + L  +  
Sbjct: 613 HIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKV 672

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD-EQ 601
            G+  +      + ++ +KN  +  A   L    +   + D  ++T      VR     Q
Sbjct: 673 EGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTC----FVRAASLSQ 728

Query: 602 NERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNV 661
           +    + +L A +         L T   ++   ++S V      +   LE+ AA  FVN 
Sbjct: 729 HTSEAIVLLKALRDTGFDLPIRLLT---EKSDSLVSEVDNCLEKLG-PLEDNAAFNFVNA 784

Query: 662 LLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLH 721
           L + L        A  V+++A +  ++   +       W  D R +S G+AL+ +   L 
Sbjct: 785 LEDLLWAFELRATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLD 844

Query: 722 RFRKRMLY---------YGVVPRRIKLVTGP------TLKIVIAQMLSSVESPFEVSKV- 765
             + +  Y         Y + P+ + L+TG       +L   +   L  + SPF   K  
Sbjct: 845 HMQAKYFYFWQDASLQGYPLSPKSVVLITGTAEYNMVSLNSTLKAFLWEMGSPFLPCKTR 904

Query: 766 --VLRAPGDSVMEWFK 779
             +L A   S+  W K
Sbjct: 905 SGLLVAKAHSLRMWLK 920



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 145/309 (46%), Gaps = 10/309 (3%)

Query: 324 AIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
           A+++++ +  R+ + P+  + A+++  +GKA +   +++++   +      +  +Y +++
Sbjct: 146 ALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGN-TVQVYNAMM 204

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL--DIAMSIFTDMERAG 440
             YA+ G+      L D MR  G  P+   F  +I +  KSG +  ++A+ +  ++ R+G
Sbjct: 205 GVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSG 264

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY+ L+   +    ++ A+K+YN M +   +P L TY A++++  +  +   A 
Sbjct: 265 IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAG 324

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++  ++++ G+  D V+ + +L  + ++G+VD        M   G   +      +    
Sbjct: 325 RLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMY 384

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-----AHLVRCQDEQNERHLMAILSATK 614
            K   ++ A  L      S    D V YT ++     A++++   E     L A +  T 
Sbjct: 385 GKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTL 444

Query: 615 HKAHAFLCG 623
               A +CG
Sbjct: 445 RTFSALICG 453



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 113/269 (42%), Gaps = 18/269 (6%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN-ESRDFDGMLSLFDEMVHDSSKNGIS 233
           N+S  ++ L++     S + P    Y ++  VL  E+R+ D         VH   K+   
Sbjct: 493 NESGKAMKLYQEMVLHS-FKPDHALYEVMLRVLGKENREED---------VHKVVKDMEE 542

Query: 234 LFSAYNRVI-QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           L    ++VI   L K +  + +    +  +   C++D         LF          E+
Sbjct: 543 LCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTE------EL 596

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +E +   EC LD S Y +M+     SG    A KL   MKE    P+      L+ S   
Sbjct: 597 FEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSG 656

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
           +G+ + + KV   ++  G   S   Y S+I++Y K G  + A++   EM+  G  P+  +
Sbjct: 657 SGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRI 716

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           +T  + + + S     A+ +   +   GF
Sbjct: 717 WTCFVRAASLSQHTSEAIVLLKALRDTGF 745



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 136/342 (39%), Gaps = 63/342 (18%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L D L ++        +  EM++   K  +  FSA   +I   AKA K   +
Sbjct: 407 PDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSA---LICGYAKAGKRVEA 463

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F  +L S  K D  +Y+V++ + L      KA ++Y+ M       D + YE+M+  
Sbjct: 464 EETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRV 523

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV----------------------DSMGK 352
           L K  R +   K+ ++M+E     S  I + LV                      D  GK
Sbjct: 524 LGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDQYGK 583

Query: 353 A--------------------GRLDTS-----MKVYME-------------MQGCGHRPS 374
           A                     +LD S     MK++               M+  G  P+
Sbjct: 584 ARDFGLFCGTEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPT 643

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
                 L+ SY+ +G+ + A ++ D +++ G   +   ++ +I+++ K+G  ++A+    
Sbjct: 644 IATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLM 703

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +M++ G  P    ++C +   + S     A+ L  ++   G 
Sbjct: 704 EMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGF 745


>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
 gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
 gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 473

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 161/368 (43%), Gaps = 8/368 (2%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVINDSDTS---LSLFRWAKRQSWYVPGDECYVMLFDV 206
           EL  ++  L     +V I + L   N +  +      F W+  Q  +      Y +L  +
Sbjct: 99  ELNVRVSGLLVREVLVGILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKI 158

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
             E  ++  M  L DEMV D        F   N +I    +A   + +   F K    + 
Sbjct: 159 FAECGEYKAMWRLVDEMVQDGFPTTARTF---NLLICSCGEAGLAKQAVVQFMKSKTFNY 215

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           +    SYN ++   L     YK  E +Y+ M +   S D  TY +++ +  + G++D   
Sbjct: 216 RPFKHSYNAILNSLLGVK-QYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFD 274

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +LF EM    F P    +  L+  +GK  +   ++     M+  G  PS   Y +LI+  
Sbjct: 275 RLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGL 334

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
           ++AG L+      DEM  AG RP+   +T++I  +  SG+LD A  +F +M   G LP  
Sbjct: 335 SRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNV 394

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ ++     +G+   A  L   M S G  P    Y+ L++ L K   +  A K++ E
Sbjct: 395 FTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIRE 454

Query: 506 MKTMGYSV 513
           M   G+ V
Sbjct: 455 MVKKGHYV 462



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 136/314 (43%), Gaps = 1/314 (0%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           ++Y L++   A+ G   A  +L  EM +  F  +   F  L+ S G+AG    ++  +M+
Sbjct: 150 NSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMK 209

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
            +   +RP    Y +++ S     +      ++ +M   GF P+   + +++ ++ + GK
Sbjct: 210 SKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGK 269

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           +D    +F +M R GF P   TY+ LL +     +  +A+   N M   G+ P +  YT 
Sbjct: 270 MDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTT 329

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSG 544
           L+  L++   ++     L EM   G   DV    V++  Y+  G +D A    R M   G
Sbjct: 330 LIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKG 389

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
              N F    +         +  A  LL+         + V+Y++++++L +       R
Sbjct: 390 QLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEAR 449

Query: 605 HLMAILSATKHKAH 618
            ++  +    H  H
Sbjct: 450 KVIREMVKKGHYVH 463


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/464 (20%), Positives = 194/464 (41%), Gaps = 50/464 (10%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D  L  F+W +++   +   E +  L  +L  +++++ + +L D    ++  +  ++F +
Sbjct: 88  DLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHS 147

Query: 238 Y---------NRVIQYL-----AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
                     N +I  +      K  +++++   F +  D   ++   S N ++   + +
Sbjct: 148 LSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKE 207

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           G       +Y+ M +    ++  T++++I  L K G+   A  + ++MK   F PS   +
Sbjct: 208 GRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITY 267

Query: 344 ASLVDSMGKAGRL-----------------------------------DTSMKVYMEMQG 368
            +++D   KAG++                                     + KV+ EMQ 
Sbjct: 268 NTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQR 327

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G +P+   Y SLI      GKLD AL L D+M   G +PN   +  +I    K   L  
Sbjct: 328 QGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKE 387

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +  D+ + G  P   T++ L++ +  +G++D A  L + M   G+ P +STY  L+ 
Sbjct: 388 AREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIV 447

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT 547
              +   V  A K+  EM+  G   D+   ++L+    K G    A+R L  M   G+  
Sbjct: 448 GFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNP 507

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           ++     L +   +     +A  +     +   + ++V Y  ++
Sbjct: 508 SHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLI 551



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 3/292 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  + +L D      +      +F+EM     +  +     YN +I  L    KL+ +
Sbjct: 297 PNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVV---TYNSLINGLCSNGKLDEA 353

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                K+     K +  +YN L+  F  K +  +A E+ + + K   + +  T+  +I +
Sbjct: 354 LGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDA 413

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K+GR+D A  L   M +    P+ + +  L+    + G +  + K+  EM+G G +  
Sbjct: 414 YGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD 473

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  L+++  K G+   A+RL DEM   G  P+   +  +I+ + + G    A+++ T
Sbjct: 474 LVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRT 533

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
            ME+ G      TY+ L++   + G+++ A +L N M   GL P  +TY  L
Sbjct: 534 LMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 152/350 (43%), Gaps = 2/350 (0%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFK 259
           V+ FDV+       G      ++V D    G S     YN +I    KA K+  +    K
Sbjct: 229 VVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLK 288

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++      +  ++N+L+  F        A +++E M++     +  TY  +I  L  +G
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +LD A+ L  +M     +P+   + +L++   K   L  + ++  ++   G  P+   + 
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI++Y KAG++D A  L   M   G  PN   +  +I    + G +  A  +  +ME  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G      TY+ L++     G+   A++L + M   GL P   TY AL+    +      A
Sbjct: 469 GLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAA 528

Query: 500 AKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTN 548
             +   M+  G   ++   +VL+  +   G ++ A R L  M   G+  N
Sbjct: 529 LNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPN 578



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 1/210 (0%)

Query: 216 MLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           ML    EM+ D  K G++     +N +I    KA +++ ++     +LD+    +  +YN
Sbjct: 384 MLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYN 443

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            L+  F  +G   +A ++ + ME      D  TY +++ +L K G    A++L  EM E 
Sbjct: 444 CLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEV 503

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
              PS   + +L+D   + G    ++ V   M+  G R +   Y  LI+ +   GKL+ A
Sbjct: 504 GLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEA 563

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
            RL +EM   G  PN   + ++ +   + G
Sbjct: 564 NRLLNEMLEKGLIPNRTTYDILRDEMMEKG 593



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 121/294 (41%), Gaps = 7/294 (2%)

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
           +F   +RQ    P    Y  L + L  +   D  L L D+M     K  +     YN +I
Sbjct: 321 VFEEMQRQGLQ-PNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVV---TYNALI 376

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGEC 301
               K   L+ +      +       +  ++N L+  +   G    AF +   M + G C
Sbjct: 377 NGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC 436

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
             + STY  +I    + G +  A KL +EM+    +     +  LVD++ K G    +++
Sbjct: 437 P-NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVR 495

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           +  EM   G  PS   Y +LI+ Y + G    AL +   M   G R N   + ++I+   
Sbjct: 496 LLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFC 555

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV-DSAMKLYNSMTSA 474
             GKL+ A  +  +M   G +P  +TY  L +     G + D    LYN   S+
Sbjct: 556 NKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDIDGHLYNVSISS 609


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 165/369 (44%), Gaps = 9/369 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ----SYNVLMTLFLNKGLPYKAFEI 292
           ++N V+  + +    +++   +  V+DS+   + Q    S+N+++      G   +A E+
Sbjct: 138 SFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEV 197

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  M    C  DG TY  ++  L   GR+D A+ L  EM+     P+   F  L+ ++ K
Sbjct: 198 FRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCK 257

Query: 353 AGRLDTSMKVY--MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            G L  + K+   M ++GC   P+   Y SL+      GKLD A+ L + M      PN 
Sbjct: 258 KGDLSRASKLVDNMFLKGC--VPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPND 315

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             F  +++   K G+    + +   +E  G+     +YS L+      G+ +  M+L+  
Sbjct: 316 ITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKE 375

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGS 529
           M   G +P    Y+AL+  L +    D A + L+EMK  G++ +  + S ++  Y + G 
Sbjct: 376 MVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGD 435

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +  A+   + M  +    +      L     KN   + A  + +  +    K+D+V Y+S
Sbjct: 436 IHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSS 495

Query: 590 VLAHLVRCQ 598
           ++      Q
Sbjct: 496 MIHGFCNAQ 504



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 177/395 (44%), Gaps = 35/395 (8%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VH 225
           + +AL  + + D ++ +FR    ++    G     ++  + NE R  D  +SL DEM V 
Sbjct: 181 VIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGR-IDEAVSLLDEMQVE 239

Query: 226 DSSKNGIS---LFSA----------------------------YNRVIQYLAKADKLEMS 254
            +  N ++   L SA                            YN ++  L    KL+ +
Sbjct: 240 GTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKA 299

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                +++ + C  +  ++  L+  F+  G       +  S+E+     +  +Y  +I  
Sbjct: 300 MSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISG 359

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K G+ +  ++L++EM E+  +P+  ++++L+D + + G+ D + +  +EM+  GH P+
Sbjct: 360 LFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPN 419

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           +  Y SL+  Y +AG +  A+ +W EM       +   ++++I    K+GKL  A+ ++ 
Sbjct: 420 SFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWK 479

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT--SAGLRPGLSTYTALLTLLAK 492
            M   G       YS ++    ++  V+  MKL+N M   +  L+P + TY  LL     
Sbjct: 480 QMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCT 539

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
           +  V  A  IL  M   G   D    D+ +  ++D
Sbjct: 540 KNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRD 574



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 88/420 (20%), Positives = 166/420 (39%), Gaps = 51/420 (12%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           +S+ ++   +    LP KA +++  M  +  C     ++  ++  + + G  D A++ + 
Sbjct: 101 KSFIIMFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYN 160

Query: 330 EMKERN----FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            + + N     +P+   F  ++ ++ + G +D +++V+  M           Y +L+   
Sbjct: 161 HVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGL 220

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
              G++D A+ L DEM++ G  PN   F ++I +  K G L  A  +  +M   G +P  
Sbjct: 221 CNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNE 280

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ L+      G++D AM L N M                          VA K +  
Sbjct: 281 VTYNSLVHGLCLKGKLDKAMSLLNRM--------------------------VANKCVPN 314

Query: 506 MKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
             T G  VD         ++K G     +R L  +   G R N F    L     K    
Sbjct: 315 DITFGTLVDG--------FVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKG 366

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF----- 620
           E    L +  VE   K + ++Y++++  L R       +  +  +    H  ++F     
Sbjct: 367 EHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSL 426

Query: 621 LCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWK 680
           + G F   +  K  ++     +    D +       Y  ++L+N L   G++  A  VWK
Sbjct: 427 MWGYFEAGDIHKAILV-----WKEMTDNDCNHHEVCY--SILINGLCKNGKLKEALIVWK 479


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 161/362 (44%), Gaps = 1/362 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++    K ++ E ++  + ++     K    ++N+++ +   +G   KA +    ME 
Sbjct: 190 NSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMET 249

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                +  TY  ++     SGR++AA  +   MK +   P    + SL+  M K GRL+ 
Sbjct: 250 SGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEE 309

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           + K++ EM   G RPSA +Y +LI+ +   G LD A    DEM   G  P    +  +I 
Sbjct: 310 ASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIH 369

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +     + D A  +  +++  G  P   TY+ L+  +        A  L++ M ++G++P
Sbjct: 370 ALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKP 429

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWL 537
              TYT+LL +L+K+  +  A  +  ++ + G   D    + L+  +  + +V  A   L
Sbjct: 430 TKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELL 489

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
           + M    +  +      + +   +    E A+ L +       K D + + ++++   R 
Sbjct: 490 KDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRR 549

Query: 598 QD 599
            D
Sbjct: 550 GD 551



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 139/309 (44%), Gaps = 5/309 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKA 248
           Q    P    Y  L D      + D   +  DEM+    K GIS   S YN +I  L   
Sbjct: 319 QKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEML----KKGISPTMSTYNSLIHALFME 374

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            + + + C  K++ +     D  +YN+L+  +       KAF +++ M          TY
Sbjct: 375 QRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTY 434

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++  L+K  R+  A  LF+++      P   +F +L+D       +  + ++  +M  
Sbjct: 435 TSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDR 494

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
               P    + ++++ + + GK++ A  L+DEM+  G +P+   F  +I  +++ G +  
Sbjct: 495 MKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKD 554

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +  +M   GF PT  TY+ L++    + + D A +L   M S G+ P  +TY  L+ 
Sbjct: 555 AFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIE 614

Query: 489 LLAKRKLVD 497
            +AK  + D
Sbjct: 615 GIAKVNIPD 623



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 149/326 (45%), Gaps = 1/326 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  + K  +LE +   F++++    +     YN L+  F NKG    A    + M
Sbjct: 293 TYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEM 352

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K   S   STY  +I +L    R D A  + +E++E+   P    +  L++   +    
Sbjct: 353 LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANA 412

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++ EM   G +P+   Y SL+   +K  ++  A  L+ ++   G  P+  +F  +
Sbjct: 413 KKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNAL 472

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ H  +  +  A  +  DM+R    P   T++ +++ H   G+V+ A +L++ M   G+
Sbjct: 473 IDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGI 532

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +P   ++  L++  ++R  +  A ++  EM   G++  V   + L+  + K+   D A  
Sbjct: 533 KPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEE 592

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMK 561
            L+ M S G+  ++     L E   K
Sbjct: 593 LLKEMVSKGMTPDDTTYFTLIEGIAK 618


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 149/306 (48%), Gaps = 3/306 (0%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + +F +M  D  +  +     YN ++ YL K  K   +   F  ++    K D  +Y  L
Sbjct: 97  IGIFRKMCSDGIEPDVV---TYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTL 153

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  + +KG   +  ++   M +    LD   + ++I +  K  ++D  + +F +M+++  
Sbjct: 154 LHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGL 213

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   + +++D + K GRLD +M  + +M   G  P+  +Y SLI +     K + A  
Sbjct: 214 TPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEE 273

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  E+   G  PN   F  I++S  K G++  +  +F  +   G  P   TYS L++ + 
Sbjct: 274 LIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYC 333

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            +G++D AMKL   M S GL+P   TY+ L+    K   ++ A  +  EM++ G + D+ 
Sbjct: 334 LAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDII 393

Query: 517 ASDVLM 522
             ++++
Sbjct: 394 TYNIIL 399



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 158/357 (44%), Gaps = 7/357 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +I  L K   ++ +Y  + ++LD     D  +YN ++          +A E+   M
Sbjct: 13  SYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVLTVM 72

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C     TY  ++     SG+ + AI +F++M      P    + SL+D + K G+ 
Sbjct: 73  VMPNC----FTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKC 128

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + K++  M   G +P    Y +L+  YA  G L     L   M   G + +  +F ++
Sbjct: 129 TEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNIL 188

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I ++ K  K+D  + +F+ M + G  P    Y  +++     G++D AM  +  M   GL
Sbjct: 189 ICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGL 248

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P +  YT+L+  L      + A +++ E+   G + + V  + +L    K+G V  + +
Sbjct: 249 TPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKK 308

Query: 536 WLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               +G  G+  +      L +  C+   + + A  LL   V    K D V Y++++
Sbjct: 309 LFDLLGHIGVNPDVITYSTLIDGYCLAGKM-DGAMKLLTGMVSVGLKPDSVTYSTLI 364



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 167/365 (45%), Gaps = 9/365 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++     + + E +   F+K+     + D  +YN LM      G   +A +I++SM
Sbjct: 79  TYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSM 138

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     D +TY  ++   A  G L     L   M +   +   ++F  L+ +  K  ++
Sbjct: 139 VKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKV 198

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D  + V+ +M+  G  P+A  Y ++I+   K G+LD A+  +++M   G  PN  ++T +
Sbjct: 199 DEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSL 258

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I +     K + A  +  ++   G  P    ++ +L+     G+V  + KL++ +   G+
Sbjct: 259 IHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGV 318

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P + TY+ L+        +D A K+L  M ++G   D V+ S ++  Y K   ++ AL 
Sbjct: 319 NPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALA 378

Query: 536 WLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             + M S+G+     T N I+  LF +    A    AK L     ES  +++L  Y  +L
Sbjct: 379 LFKEMESNGVNPDIITYNIILHGLFRTRRTAA----AKELYARITESGTQLELSTYNIIL 434

Query: 592 AHLVR 596
               +
Sbjct: 435 MDFAK 439



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 159/373 (42%), Gaps = 5/373 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L+KA  ++ +      ++  +C     +YN +M  + + G   KA  I+  M
Sbjct: 48  TYNSIIAALSKAQAMDRAMEVLTVMVMPNC----FTYNSIMHGYCSSGQSEKAIGIFRKM 103

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  ++  L K+G+   A K+F  M +R  +P    + +L+      G L
Sbjct: 104 CSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGAL 163

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
                +   M   G +    ++  LI +Y K  K+D  + ++ +MR  G  PN   +  +
Sbjct: 164 VEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTV 223

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K G+LD AM  F  M   G  P    Y+ L+    +  + + A +L   +   G+
Sbjct: 224 IDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGI 283

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
            P +  +  +L  L K   V  + K+   +  +G + DV + S ++  Y   G +D A++
Sbjct: 284 NPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMK 343

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L  M S G++ ++     L     K    E A  L +    +    D++ Y  +L  L 
Sbjct: 344 LLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLF 403

Query: 596 RCQDEQNERHLMA 608
           R +     + L A
Sbjct: 404 RTRRTAAAKELYA 416



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 150/305 (49%), Gaps = 3/305 (0%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           +FD MV    K  I+ +     +  Y +K   +EM +     ++ +  ++D   +N+L+ 
Sbjct: 134 IFDSMVKRGLKPDITTYGTL--LHGYASKGALVEM-HDLLALMVQNGMQLDHHVFNILIC 190

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +  +    +   ++  M +   + +   Y  +I  L K GRLD A+  F++M ++   P
Sbjct: 191 AYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTP 250

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +  ++ SL+ ++    + + + ++  E+   G  P+   + ++++S  K G++  + +L+
Sbjct: 251 NVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLF 310

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           D +   G  P+   ++ +I+ +  +GK+D AM + T M   G  P   TYS L+  +   
Sbjct: 311 DLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKI 370

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
            +++ A+ L+  M S G+ P + TY  +L  L + +    A ++   +   G  +++S  
Sbjct: 371 NRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTY 430

Query: 519 DVLMV 523
           +++++
Sbjct: 431 NIILM 435



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 134/301 (44%), Gaps = 5/301 (1%)

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           + G C  D  +Y  +I  L K G +D A   + EM +R   P    + S++ ++ KA  +
Sbjct: 3   DDGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAM 62

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +M+V   M      P+   Y S++  Y  +G+ + A+ ++ +M   G  P+   +  +
Sbjct: 63  DRAMEVLTVMV----MPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSL 118

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K+GK   A  IF  M + G  P  +TY  LL  +AS G +     L   M   G+
Sbjct: 119 MDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGM 178

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
           +     +  L+    K++ VD    +  +M+  G + + V+   V+    K G +D A+ 
Sbjct: 179 QLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAML 238

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M   G+  N  +   L  +      +E A+ L+   ++     ++V + ++L  L 
Sbjct: 239 NFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLC 298

Query: 596 R 596
           +
Sbjct: 299 K 299


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 203/468 (43%), Gaps = 22/468 (4%)

Query: 159 QFVPKMVHITQALKVINDSDTS----LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFD 214
           QF P +V     ++V++   TS    L LFRWA+ Q  +   +  +  + ++L ++    
Sbjct: 73  QFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMR 132

Query: 215 ------------GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
                        M  + D ++     + +S+    + +I   +K   +E     F K++
Sbjct: 133 SAYWVMERVINANMHRIVDVLIGGCVSSEVSV-KILDLLIWVYSKKSMVEQCLSVFDKMI 191

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLAKSGR 320
            S    D ++ N ++ +  +K L  KA E+Y +M  GE  +  +  TY  ++ S  K G+
Sbjct: 192 KSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTM--GEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +   + L  EM+ R   P+   +  L++ + K G  + +  +  EM   G + SA  Y  
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 309

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI  Y   G L  AL L +EM + G  P    +   I    K G++  AM   +DM    
Sbjct: 310 LIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANN 369

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
            LP   +Y+ L+  +   G +  A  L++ + S  L P + TY  LL  L ++  ++VA 
Sbjct: 370 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQ 429

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++ +EM   G + D+    +L+    K GS+  A  +   M   G+  +++         
Sbjct: 430 QLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGE 489

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           +K      A  L E  +      DL++Y  V+  L +  + +    L+
Sbjct: 490 LKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELL 537



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 133/304 (43%), Gaps = 3/304 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R  +  P    Y  L D L    + +    L  EM+++     I     Y  ++    K 
Sbjct: 401 RSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIV---TYTILVNGSCKM 457

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             L M+   F ++L    ++D+ +Y   +   L  G   +AF + E M       D   Y
Sbjct: 458 GSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIY 517

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            +++  L K G L+ A +L Q+M      P +  + S++ +  + GRL    +++ EM  
Sbjct: 518 NVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLS 577

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  PS   Y  LI  +A  G+L+ A   + EM+  G  PN   +  +I    K  ++D 
Sbjct: 578 KGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQ 637

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A + F +M   G  P   +Y+ L+  + + G    A+ LY  M   G++P   T++ALL 
Sbjct: 638 AYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLK 697

Query: 489 LLAK 492
            L K
Sbjct: 698 QLGK 701



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 177/432 (40%), Gaps = 49/432 (11%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LSL +EMV    K      + YN  I  L K  ++  +      +L ++   D  SYN L
Sbjct: 324 LSLQEEMV---LKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTL 380

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  +   G   KAF +++ +          TY  ++  L + G L+ A +L  EM     
Sbjct: 381 IYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI 440

Query: 337 RPSFNIFASLVDSMGKAGRL---------------------------------DTS--MK 361
            P    +  LV+   K G L                                 DTS    
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFS 500

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           +  EM   G  P   +Y  +++   K G L+ A  L  +M   G  P++  +T II +H 
Sbjct: 501 LQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHL 560

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           ++G+L     IF +M   G  P+  TY+ L+  HA  G+++ A   ++ M   G+ P + 
Sbjct: 561 ENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVI 620

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
           TY +L+  L K + +D A     EM   G +    S + ++      G+   AL   + M
Sbjct: 621 TYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQM 680

Query: 541 GSSGIR----TNNFIVRQLFESCMKNALYESAK------PLLETYVESAAKVDLVLYTSV 590
              G++    T++ +++QL + C   A++ ++        LL   V +A  +  V   + 
Sbjct: 681 LDRGVQPDSCTHSALLKQLGKDCKLQAVHGTSTMPTAKVDLLSQTVGAATALTSVSSIAE 740

Query: 591 LAHLVRCQDEQN 602
             H+ + Q  QN
Sbjct: 741 NGHITKEQLRQN 752



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 169/394 (42%), Gaps = 10/394 (2%)

Query: 157 KLQFVPKMVHITQALKVINDSD---TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213
           K +  P + +  + L+++ D D    ++ ++R    +    P    Y  L D   +    
Sbjct: 192 KSRLSPDVKNCNRILRILRDKDLMSKAVEVYR-TMGEFGIKPTIVTYNTLLDSYCKGGKV 250

Query: 214 DGMLSLFDEMVH-DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
              L L  EM     + N ++    YN +I  L+K  + E +     ++L +  K+   +
Sbjct: 251 QQGLDLLSEMQRRGCAPNDVT----YNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYT 306

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN L+  + NKG+  +A  + E M     S   +TY   I  L K GR+  A++   +M 
Sbjct: 307 YNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDML 366

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
             N  P    + +L+    + G L  +  ++ E++     P+   Y +L++   + G+L+
Sbjct: 367 ANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELE 426

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A +L  EM   G  P+   +T+++    K G L +A   F +M   G       Y+  +
Sbjct: 427 VAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRI 486

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
                 G    A  L   M + G  P L  Y  ++  L K   ++ A+++L +M + G  
Sbjct: 487 VGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVI 546

Query: 513 VD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
            D V+ + ++  ++++G +         M S G+
Sbjct: 547 PDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGL 580


>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 186/404 (46%), Gaps = 8/404 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           F   L+ F  +V   S    SL + Y  +I  LAK     ++     ++ +    + +Q 
Sbjct: 119 FPEALTFFHHVV--PSLPADSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSIPVSSQV 176

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEK-GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
              ++  ++  G+  +A E++  ME+ G    D +    ++ +L+K      A  LF   
Sbjct: 177 ILAIIRRYVRAGMSPEASELFRRMEEYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSY 236

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           K   F P   ++ +LV +  +AG LD + +V+ EMQ  G  P+   Y S+I++  +AG++
Sbjct: 237 KS-VFPPDVVLYTTLVHAWCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQV 295

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A  L  +M   G  PN   F  I+ +H K+G+ +  + +   M + G  P   TY+ L
Sbjct: 296 PRAQELLCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFL 355

Query: 452 LEMHASSGQ--VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
           +E H   GQ  +D+AMK+   M + G  P   T+  +L L+     V+ A ++   M+ +
Sbjct: 356 METHCGKGQSNLDAAMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQEL 415

Query: 510 GYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYES 567
               +V   ++LM ++ K+ S+D  LR  + M + G+  N      L ES C +     +
Sbjct: 416 QCKPNVVTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGRGNWRRA 475

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
              L E   E + K    +Y  VL  L +    +    L+ +++
Sbjct: 476 HATLREMVEEKSLKPTKPVYDMVLMLLRKAGQLRKHEELVELMA 519



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           L+ +     K++   C  D  ++N ++ L L  G    A  +YE M++ +C  +  TY L
Sbjct: 367 LDAAMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNL 426

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM-QGC 369
           ++    K   +D  +++ ++M  +   P+ N + +L++S    G    +     EM +  
Sbjct: 427 LMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGRGNWRRAHATLREMVEEK 486

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF--RPN 409
             +P+ P+Y  ++    KAG+L     L + M   GF  RP+
Sbjct: 487 SLKPTKPVYDMVLMLLRKAGQLRKHEELVELMADRGFIKRPS 528


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 180/412 (43%), Gaps = 30/412 (7%)

Query: 116 FDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVIN 175
            D HV++  +     N S +A+ +    +++    +  ++    F+P     ++ + ++ 
Sbjct: 437 LDAHVVLNKV-----NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLC 491

Query: 176 DS---DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI 232
           ++   D +  LF   K  +  VP    Y +L D   +          FDEMV D     +
Sbjct: 492 NASKVDNAFLLFEEMK-SNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNV 550

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
             ++A   +I    KA K+  +   F+ +L   C  +  +Y  L+      G   KA +I
Sbjct: 551 VTYTA---LIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 293 YESMEKGECSL----------DGS-------TYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           Y  M +G   +          DG+       TY  ++  L K+ ++  A  L   M    
Sbjct: 608 YARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEG 666

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P+  ++ +L+D   K G+LD +  V+ +M   G+ P+   Y SLI+   K  +LD AL
Sbjct: 667 CEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLAL 726

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           ++   M      PN  ++T +I+   K GK D A  + + ME  G  P   TY+ +++  
Sbjct: 727 KVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF 786

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
             +G+VD  ++L   M + G  P   TY  L+       L+D A ++L EMK
Sbjct: 787 GKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMK 838



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 160/366 (43%), Gaps = 17/366 (4%)

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
           + L   D LE++   + ++LD+   ++  + + L       G   KA+ I   M      
Sbjct: 418 EKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFI 477

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
            D STY  +I  L  + ++D A  LF+EMK  +  P    +  L+DS  K G L  + K 
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           + EM   G  P+   Y +LI +Y KA K+ +A  L++ M   G  PN   +T +I+ H K
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 423 SGKLDIAMSIFTDMERAGFLPTPS----------------TYSCLLEMHASSGQVDSAMK 466
           SG+++ A  I+  M     +P                   TY  L++    + +V  A  
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYI 525
           L + M+  G  P    Y AL+    K   +D A  +  +M   GY  +V + S ++    
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           KD  +D AL+ L  M  +    N  I  ++ +   K    + A  L+    E     ++V
Sbjct: 718 KDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVV 777

Query: 586 LYTSVL 591
            YT+++
Sbjct: 778 TYTAMI 783



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 166/399 (41%), Gaps = 57/399 (14%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           ++P    Y  +  +L  +   D    LF+EM    S + +     Y  +I    K   L+
Sbjct: 476 FIPDTSTYSKVIGLLCNASKVDNAFLLFEEM---KSNHVVPDVFTYTILIDSFCKVGLLQ 532

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F +++   C  +  +Y  L+  +L       A E++E M    C  +  TY  +I
Sbjct: 533 QARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 313 PSLAKSGRLDAAIKLFQEMK---------------ERNFR-PSFNIFASLVDSMGKAGRL 356
               KSG+++ A +++  M+               + N R P+   + +LVD + KA ++
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 357 DTSMKVY--MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
             +  +   M ++GC   P+  +Y +LI+ + K GKLD A  ++ +M   G+ PN   ++
Sbjct: 653 KEARDLLDVMSVEGC--EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+   K  +LD+A+ + + M      P    Y+ +++     G+ D A +L + M   
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534
           G  P + TYTA++                      G+              K G VD  L
Sbjct: 771 GCHPNVVTYTAMID---------------------GFG-------------KAGKVDKCL 796

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
             +R MG+ G   N    R L   C    L + A  LL+
Sbjct: 797 ELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLD 835



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 142/330 (43%), Gaps = 42/330 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L D L ++        L D M V     N I     Y+ +I    K  KL+ +   F
Sbjct: 639 YGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHI----VYDALIDGFCKVGKLDEAQMVF 694

Query: 259 KKVLDSDCKIDTQSYNVLMT-LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
            K+ +     +  +Y+ L+  LF +K L   A ++   M +  C+ +   Y  MI  L K
Sbjct: 695 TKMSERGYGPNVYTYSSLIDRLFKDKRLDL-ALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G+ D A +L   M+E+   P+   + +++D  GKAG++D  +++  +M   G  P+   
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 378 YVSLIESYAKAGKLDTALRLWDEMR-------IAGFR----------------------- 407
           Y  LI     AG LD A +L DEM+       +AG+R                       
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 408 ---PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST--YSCLLEMHASSGQVD 462
              P    + ++I+S  K+G+L++A+ +   M             YS L+E  + + +VD
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVD 933

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
            A +LY  M   G  P LS +  L+  L +
Sbjct: 934 KAFELYADMIKRGGIPELSIFFYLVKGLIR 963



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 194/507 (38%), Gaps = 79/507 (15%)

Query: 138 IVEVVNRWKWGPELETQLDKLQFVPKM--VHITQALKVINDSDTSLSLFRWAKRQSWYVP 195
           I +V+     G   +TQ    QF  K+    +   L ++ + +  +  F WA RQ  Y  
Sbjct: 101 ISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQIGYGH 160

Query: 196 GDECYVMLFDVLN-------------ESRDFDGML--SLFDEMVHDSSKNGISLFS---- 236
               Y  L +VL              E RD D  +   L + ++    +NG+   +    
Sbjct: 161 TGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEEL 220

Query: 237 -------------AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
                         YN +++   +AD+L+ +Y   +++ DS   +D  +    + L    
Sbjct: 221 GRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKA 280

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-------F 336
           G   +A  +   +EK E  LD   Y  MI  L ++   + A+     M+  +       +
Sbjct: 281 GRWREALAL---IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTY 337

Query: 337 R----------------------------PSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
           R                            PS  IF SL+ +  ++G    + K+  +M  
Sbjct: 338 RILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGD 397

Query: 369 CGHRPSAPMYVSLIESYAKAGK------LDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           CG +P   +Y  LI       K      L+ A + + EM  A    N    + +      
Sbjct: 398 CGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCG 457

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           +GK + A SI  +M   GF+P  STYS ++ +  ++ +VD+A  L+  M S  + P + T
Sbjct: 458 AGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFT 517

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMG 541
           YT L+    K  L+  A K   EM   G + +V     L+  Y+K   +  A      M 
Sbjct: 518 YTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMML 577

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESA 568
           S G   N      L +   K+   E A
Sbjct: 578 SEGCIPNVVTYTALIDGHCKSGQIEKA 604



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 134/309 (43%), Gaps = 35/309 (11%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++  L KA K++ +      +    C+ +   Y+ L+  F   G   +A  ++  M
Sbjct: 638 TYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     +  TY  +I  L K  RLD A+K+   M E +  P+  I+  ++D + K G+ 
Sbjct: 698 SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKT 757

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++   M+  G  P+   Y ++I+ + KAGK+D  L L  +M   G  PNF  + ++
Sbjct: 758 DEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVL 817

Query: 417 IESHAKSGKLDIAMSIFTDMER-------AGF--------------------------LP 443
           I     +G LD A  +  +M++       AG+                          +P
Sbjct: 818 INHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVP 877

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST--YTALLTLLAKRKLVDVAAK 501
               Y  L++    +G+++ A++L+  M+S           Y++L+  L+    VD A +
Sbjct: 878 IIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFE 937

Query: 502 ILLEMKTMG 510
           +  +M   G
Sbjct: 938 LYADMIKRG 946


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   + E++       +  F   N
Sbjct: 91  AIECYRLTREHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYKEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+  IF +L+D   K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L     L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M + GL+P 
Sbjct: 327 CCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 387 ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 141/332 (42%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 131 KEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P    +
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIF 250

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +     ++ EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSM 310

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A    + M    IR +      L     +      
Sbjct: 311 KGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVD 370

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 371 AEKMLREMLNVGLKPDARTYTMIINEFCKKGD 402



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 133/303 (43%), Gaps = 3/303 (0%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  +E  F   F+    +++ + K     
Sbjct: 65  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFK 124

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 125 LVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 244

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P    +T L+    K   VD+A +I  +M +     D+   + L+  + K G +      
Sbjct: 245 PNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHL 304

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L + C K    ++A    +  ++   ++D V YT++++ L  
Sbjct: 305 IDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGL-- 362

Query: 597 CQD 599
           CQ+
Sbjct: 363 CQE 365



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 111/277 (40%), Gaps = 38/277 (13%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLDTA 394
           R    +F+ L+ +  ++G L  +++ Y   +   H+   P      ++E   K       
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTRE--HKFWVPFDTCRKVLEHLMKLKYFKLV 126

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              + E+   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+  
Sbjct: 127 WGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 186

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +   G +D   +L ++M ++G++P + TY+ L+  L K   +D A ++  EM        
Sbjct: 187 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV------ 240

Query: 515 VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
                                        G+  N  I   L +   KN   + A  + + 
Sbjct: 241 ----------------------------KGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQ 272

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
            +  +   DL+ Y +++  L +  D +   HL+  +S
Sbjct: 273 MLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMS 309


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 187/417 (44%), Gaps = 41/417 (9%)

Query: 132 ASAVAKIVEVVNRWKWG-PELETQLDKLQFVPKMVHITQALKVINDS-DTSLSLFRWAKR 189
           AS V K+  ++ ++    P+LE  L +   V +     + L    D+ + +   + WA +
Sbjct: 63  ASDVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLNRCGDAGNLAYRFYSWASK 122

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           QS +    + Y  +  VL+  R F  + +L +EM  ++                      
Sbjct: 123 QSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPH-------------------- 162

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
                             I  Q + +LM  F +  + +KA ++ + M    C  D   + 
Sbjct: 163 -----------------LITPQVFVILMRRFASARMVHKAVQVLDEMPNYGCEPDEYVFG 205

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++ +L K+G +  A  LF+E++ R ++PS   F SL+    K G+L  +  V ++M+  
Sbjct: 206 CLLDALRKNGSVKEAASLFEELRYR-WKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDA 264

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P   +Y +L+  YA+A K+  A  L  EMR  G  PN   +T++I+S  K  +L+ A
Sbjct: 265 GIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEA 324

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             +F +M+R G      TYS L+      G++    +L + M   G  P    Y  ++  
Sbjct: 325 TRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVA 384

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGI 545
             K++ ++   +++ EM+ +G + D+S  + V+ +  K G V   +R    M SSG+
Sbjct: 385 HEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGL 441



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 124/273 (45%), Gaps = 5/273 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN ++   A+ADK+  +Y   K++    C+ +  SY VL+          +A  ++  M+
Sbjct: 273 YNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQ 332

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  D  TY  +I    K G++    +L  EM ++   P+  I+  ++ +  K   L+
Sbjct: 333 RNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELE 392

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              ++  EMQ  G  P   +Y ++I    K G++   +RLW+EM  +G  P+   F ++I
Sbjct: 393 ECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMI 452

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS---SGQVDSAMKLYNSMT-S 473
               + G L  A   F +M   G    P  Y  L E+  S   + +++ A   +N +T S
Sbjct: 453 NGFLEQGCLVEACEYFKEMVGRGLFAAPQ-YGTLKELMNSLLRAEKLEMAKDAWNCITAS 511

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            G +  +S +T  +  L  +  V  A    + M
Sbjct: 512 KGCQLNVSAWTIWIHALFSKGHVKEACSFCIAM 544



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 141/310 (45%), Gaps = 12/310 (3%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHD---SSKNGISLFSAYNRVIQYLAKADKL 251
           P +  +  L D L ++       SLF+E+ +    S K+  SL   +        K  KL
Sbjct: 199 PDEYVFGCLLDALRKNGSVKEAASLFEELRYRWKPSVKHFTSLLYGW-------CKEGKL 251

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
             +     ++ D+  + D   YN L+  +        A+++ + M +  C  + ++Y ++
Sbjct: 252 MEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVL 311

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I SL K  RL+ A ++F EM+    +     +++L+    K G++    ++  EM   GH
Sbjct: 312 IQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGH 371

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+  +Y  ++ ++ K  +L+    L +EM+  G  P+  ++  +I    K G++   + 
Sbjct: 372 FPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVR 431

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL--RPGLSTYTALLTL 489
           ++ +ME +G  P+  T+  ++      G +  A + +  M   GL   P   T   L+  
Sbjct: 432 LWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFAAPQYGTLKELMNS 491

Query: 490 LAKRKLVDVA 499
           L + + +++A
Sbjct: 492 LLRAEKLEMA 501


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 178/413 (43%), Gaps = 10/413 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           + ++   R  K+ ++ +P   C  +L  V+  ++        + E++       + LF  
Sbjct: 172 EDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPGHCWEFYLEVLDYGYPPNVYLF-- 229

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            N ++    K   +  +   F ++     +    S+N L++ +       + F +   ME
Sbjct: 230 -NILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVME 288

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               S D  TY  +I  L K  R++ A  LF EM E    P+   F +L+D   K G++D
Sbjct: 289 SERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKID 348

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +++ +  M+  G RP    Y +LI    + G L  A +L +EM   GF+P+   FT ++
Sbjct: 349 LALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLM 408

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K G +D A+ I   M   G       ++ L+      G+V  A ++   M SAG +
Sbjct: 409 DGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHK 468

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P   TYT ++    K+  V + AK+L EM+  G    V   + LM  + K G + +A   
Sbjct: 469 PDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKML 528

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNA------LYESAKPLLETYVESAAKVD 583
           L  M +  +  N+     L +   K+       ++   K L+  Y    A V+
Sbjct: 529 LHAMLNMEVVPNDITFNILLDGHCKHGSSVDFKIFNGEKGLVSDYASYTALVN 581



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 132/301 (43%), Gaps = 1/301 (0%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           + +++    K G +  A  +F E+  R  RPS   F +L+    ++  ++    +   M+
Sbjct: 229 FNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVME 288

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
                P    Y +LI    K  +++ A  L+DEM   G  PN   FT +I+   K GK+D
Sbjct: 289 SERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKID 348

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           +A+  F  M+  G  P   TY+ L+      G +  A KL N M   G +P   T+T L+
Sbjct: 349 LALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLM 408

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
               K   +D A +I   M   G  +D V+ + ++    +DG V  A R L+ M S+G +
Sbjct: 409 DGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHK 468

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            ++     + +   K    +    LL+          +V Y +++    +    +N + L
Sbjct: 469 PDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKML 528

Query: 607 M 607
           +
Sbjct: 529 L 529



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 142/311 (45%), Gaps = 7/311 (2%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFR-PSFNIFASLVDSMGKAGRLDTSMKVYME 365
            ++ +I +   S  ++ AI+  + +K+ NF  P       L   M    +     + Y+E
Sbjct: 157 VFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPGHCWEFYLE 216

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           +   G+ P+  ++  L+  + K G +  A  ++DE+   G RP+   F  +I  + +S  
Sbjct: 217 VLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKN 276

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           ++    + + ME     P   TYS L+       +V+ A  L++ M   GL P   T+T 
Sbjct: 277 VEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTT 336

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSG 544
           L+    K   +D+A +    MK  G   D+   + L+  + +DG +  A + L  M  +G
Sbjct: 337 LIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNG 396

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD---EQ 601
            + +      L + C K+   +SA  + +  VE   ++D V +T++++ L  C+D     
Sbjct: 397 FKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGL--CRDGRVRD 454

Query: 602 NERHLMAILSA 612
            ER L  +LSA
Sbjct: 455 AERMLKDMLSA 465


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 135/257 (52%), Gaps = 1/257 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN  +   +  G P +A EI++ M++  C     TY L+I    K+ +   A+KLF EM+
Sbjct: 221 YNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMR 280

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
            +  +P+   + +LV++  + G  + + +++ ++Q  GH P    Y +L+E+Y++AG   
Sbjct: 281 SQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPY 340

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A  ++  M+  G  P+   + ++++++ + G  + A ++F +M+R G  PT  ++  LL
Sbjct: 341 GAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLL 400

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             ++ +G V     + N +  +GL P      ++L L  +        ++L  M++  Y+
Sbjct: 401 SAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYA 460

Query: 513 VDVSASDVLM-VYIKDG 528
            D+S  ++L+ +Y + G
Sbjct: 461 TDISTYNILINIYGRAG 477



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 139/289 (48%), Gaps = 1/289 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   +N+++  +  K L   A   Y  + +  C     TY L++ +   SG L+ A  +F
Sbjct: 147 DVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSGLLEKAEAIF 206

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM++    PS  ++ + +D + KAG    +++++  M+    +PS   Y  LI  + KA
Sbjct: 207 AEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKA 266

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            +   AL+L++EMR    +PN   +T ++ + A+ G  + A  IF  ++  G  P    Y
Sbjct: 267 SQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAY 326

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+E ++ +G    A ++++ M   G  P  ++Y  ++    +  L + A  +  EMK 
Sbjct: 327 NALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKR 386

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
           +G +  + +  +L+  Y K G V      +  +  SG+  + F++  + 
Sbjct: 387 LGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSML 435



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 164/360 (45%), Gaps = 1/360 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N VI    +    +M+   + +++++ C     +Y +L+  +   GL  KA  I+  M 
Sbjct: 151 FNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSGLLEKAEAIFAEMR 210

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K         Y   I  L K+G    A+++FQ MK    +PS   +  L++  GKA +  
Sbjct: 211 KYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSY 270

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++K++ EM+    +P+   Y +L+ ++A+ G  + A  ++++++  G  P+   +  ++
Sbjct: 271 MALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALM 330

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E+++++G    A  IF+ M+  G  P  ++Y+ +++ +   G  + A  ++  M   G+ 
Sbjct: 331 EAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGIT 390

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRW 536
           P + ++  LL+  +K   V     I+ E+   G   D    + +L +Y + G        
Sbjct: 391 PTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEV 450

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M S    T+      L     +   +E  + L ++      K D+V +TS L    R
Sbjct: 451 LTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSR 510



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 149/328 (45%), Gaps = 3/328 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y    D L ++ +    + +F  M  D  +        Y  +I    KA +  M+
Sbjct: 216 PSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTE---TYTLLINLHGKASQSYMA 272

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F ++    CK +  +Y  L+  F  +GL  KA EI+E +++     D   Y  ++ +
Sbjct: 273 LKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEA 332

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            +++G    A ++F  M+     P    +  +VD+ G+ G  + +  V+ EM+  G  P+
Sbjct: 333 YSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPT 392

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              ++ L+ +Y+KAG +     + +E+  +G  P+  +   ++  + + G+      + T
Sbjct: 393 MKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLT 452

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            ME   +    STY+ L+ ++  +G  +    L+ S+ +  L+P + T+T+ L   +++K
Sbjct: 453 AMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKK 512

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLM 522
           L     +I  EM   G   D   + VL+
Sbjct: 513 LYTKCLEIFEEMIDAGCHPDGRTAKVLL 540


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 175/409 (42%), Gaps = 7/409 (1%)

Query: 194 VPGDE-CYVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKL 251
           +P D   Y  +       R +   + L ++M     S N IS    YN  I   AK D+ 
Sbjct: 283 IPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVIS----YNSAIDACAKGDRW 338

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           + +    +++          SYN         G   +A E+ + M     + +  +Y   
Sbjct: 339 KEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSA 398

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           + + AK G+ + A+KL + M      P    F S +D+ G+  + +T++++  EM   G 
Sbjct: 399 LDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGL 458

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+   Y S IE+  ++ +   A+ L+ EM   G  PN   +  +I++ AK  + ++A+ 
Sbjct: 459 TPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQ 518

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           + T M   G  P   +Y+  +E      Q + A++L   M + G +P + +Y + +T  A
Sbjct: 519 LLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACA 578

Query: 492 KRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           K      A  +L +M T+G + + VS    +    K    D A+R L+ M + G   N  
Sbjct: 579 KSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLI 638

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
                 ++C K   ++ A  LL          D   Y +V++   RC D
Sbjct: 639 TYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISAFQRCSD 687



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 4/374 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  I   AK  + E +    ++V++      T++YN ++      G   +A ++   M 
Sbjct: 220 YNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQML 279

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
             +   D  +Y  +I +  +  R   A+ L ++M+ +   P+   + S +D+  K  R  
Sbjct: 280 TNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWK 339

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  EM   G  P+   Y S   + A  G+   AL L  EM   G  PN   +   +
Sbjct: 340 EALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSAL 399

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           ++ AK G+ + A+ +   M   G  P   +++  ++      Q ++A++L   M +AGL 
Sbjct: 400 DACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLT 459

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV-DHALRW 536
           P + TY + +    +      A  +  EM T G S +V   + ++     G   + A++ 
Sbjct: 460 PNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQL 519

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M + G+  +        E+C K   +E A  LL+       K D++ Y S +     
Sbjct: 520 LTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTA--- 576

Query: 597 CQDEQNERHLMAIL 610
           C      R  + +L
Sbjct: 577 CAKSGRWREALGLL 590



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 138/347 (39%), Gaps = 3/347 (0%)

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
           S   +DT SYN+ +    N      A  +   M     + D  TY   I + +K GR   
Sbjct: 104 SGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKE 163

Query: 324 AIKLFQEM--KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           A+ L  +M        P    + S + +    GR   +M +  +M   G  P+   Y S 
Sbjct: 164 AMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSA 223

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I + AK  + + A+ L +E+   GF P+   +  +I++ AK G+   AM +   M     
Sbjct: 224 IGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDI 283

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
                +YS ++       +   AM L   M + G+ P + +Y + +   AK      A  
Sbjct: 284 PADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALD 343

Query: 502 ILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +L EM T+G    V S +        +G    AL  L+ M + GI  N        ++C 
Sbjct: 344 LLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACA 403

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           K   +E A  LL       +  D++ + S +    R Q  +    L+
Sbjct: 404 KGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELL 450



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 164/402 (40%), Gaps = 10/402 (2%)

Query: 201 VMLFDVLNES--RDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCC 257
           V L  +L E+  RD+   L+  DE       +G SL  ++YN  I   +   +   +   
Sbjct: 77  VKLKSILLEAKGRDWRTALAALDEF----KISGGSLDTTSYNIAIAACSNGRQWATAVRL 132

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM--EKGECSLDGSTYELMIPSL 315
            +++       D  +YN  +      G   +A ++   M       + D  TY   I + 
Sbjct: 133 LREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAAC 192

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
           +  GR   A+ L ++M  +   P+   + S + +  K  R + +M +  E+   G  PS 
Sbjct: 193 SNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPST 252

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y  +I++ AK G+   A+ L  +M       +   ++ +I +  +  +   AM +   
Sbjct: 253 RTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQ 312

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M   G  P   +Y+  ++  A   +   A+ L   MT+ GL P + +Y +     A    
Sbjct: 313 MRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGR 372

Query: 496 VDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
              A ++L EM   G + + +S +  L    K G  + A++ LR M + G   +      
Sbjct: 373 WVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNS 432

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             ++C +   +E+A  LL     +    +++ Y S +    R
Sbjct: 433 AIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGR 474



 Score = 47.0 bits (110), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 99/248 (39%), Gaps = 6/248 (2%)

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESY---AKAGKLDTALRLWDEMRIAGFRPNFG 411
           R + S++     +G   R   P  +  ++S    AK     TAL   DE +I+G   +  
Sbjct: 52  RGEGSLEPSTRSRGAASRGGKPKSLVKLKSILLEAKGRDWRTALAALDEFKISGGSLDTT 111

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            + + I + +   +   A+ +  +M   G  P   TY+  +   +  G+   AM L   M
Sbjct: 112 SYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQM 171

Query: 472 T--SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDG 528
              + G+ P + TY + +   +       A  +L +M   G   + ++ +  +    K  
Sbjct: 172 VAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGR 231

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
             + A+  L  +   G   +      + ++C K   +  A  LL   + +    D++ Y+
Sbjct: 232 RWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYS 291

Query: 589 SVLAHLVR 596
           SV+A   R
Sbjct: 292 SVIAACGR 299


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 163/355 (45%), Gaps = 1/355 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    K   +E     F K+ + D   +  +Y VL+  F   GL     E+YE M
Sbjct: 201 VYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKM 260

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +      +  TY  MI      G+L+ A +LF EM+ER    +   + +L+  + +  R+
Sbjct: 261 KLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRV 320

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++   M+  G  P+   Y +LI+ Y   G LD A  L+++M+ +G  P+   + ++
Sbjct: 321 LEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNIL 380

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I   +++        +  +ME  G  P+  TY+ L++    S  ++ A ++Y+SM  AGL
Sbjct: 381 IAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGL 440

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALR 535
              +  Y  L+  L     +  A+K+   +  M     DV  + ++  Y K+GS   ALR
Sbjct: 441 VADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALR 500

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
            L+ MG +G+  N        +   K+  +  A+ LL+  +E   K  + ++  +
Sbjct: 501 LLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 555



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 168/358 (46%), Gaps = 4/358 (1%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + +N ++  L K++  E ++  F +    + K+D  S+ +++      G   K FE+   
Sbjct: 131 NTFNNLLILLIKSNFFEKAWRVFNET-KGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQ 189

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+   S +   Y  +I    K+G ++   +LF +M E +   +   +  L++   K G 
Sbjct: 190 MEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGL 249

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
               +++Y +M+  G  P+   Y S+I      GKL+ A  L+DEMR  G   N   +  
Sbjct: 250 KKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNT 309

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I    +  ++  A  +   M+R G  P   +Y+ L++ + S G +D A  L+N M S+G
Sbjct: 310 LIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 369

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
             P L+TY  L+   ++ K       ++ EM+  G S       +LM   ++  +++ A 
Sbjct: 370 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 429

Query: 535 RWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +    M  +G+  + +I   L    C+   + E++K L ++  E   K + V+Y +++
Sbjct: 430 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASK-LFKSLDEMHLKPNDVIYNTMI 486



 Score = 44.3 bits (103), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           +  ++  H  S   + A+  +N M   GL PG +T+  LL LL K    + A ++  E K
Sbjct: 98  HEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETK 157

Query: 508 TMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
                +DV +  +++    + G +D     L  M   G+  N  +   L + C KN   E
Sbjct: 158 G-NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIE 216

Query: 567 SAKPL 571
             K L
Sbjct: 217 RGKQL 221


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 173/384 (45%), Gaps = 13/384 (3%)

Query: 217 LSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           L L D MV +    N I+    Y  V+  + K+    ++   F+K+ +   K     Y++
Sbjct: 194 LVLIDRMVKYGCEANEIT----YGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSI 249

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           ++      G    A  ++  ME      D   Y  +I  L   GR D   K+ +EM  RN
Sbjct: 250 VIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRN 309

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P+   F++L+D   K G+L  + ++Y EM   G  P    Y SLI+ + K  +L  A 
Sbjct: 310 IIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEAN 369

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           ++ D M   G  PN   ++++I S+ K+ ++D  M +F ++   G +    TY+ L++  
Sbjct: 370 QMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGF 429

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             SG+++ A +L+  M S G+ P + TY  LL  L     +  A +I  +M+     + +
Sbjct: 430 CQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGI 489

Query: 516 SASDVLMVYIKDGS-VDHALRWLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKP 570
              ++++  + + S VD A      +   G++    T N ++  L   C K +L E+   
Sbjct: 490 GIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGL---CKKGSLSEADML 546

Query: 571 LLETYVESAAKVDLVLYTSVLAHL 594
             +   +  A  D      + AHL
Sbjct: 547 FRKMKEDGCAPSDCTYNILIRAHL 570



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 178/389 (45%), Gaps = 39/389 (10%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L LFR  + +S      + Y ++ D L +  + D  LSLF+EM     K  +    AY+
Sbjct: 228 ALDLFRKMEERSIKASVVQ-YSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVV---AYS 283

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I  L    + +      ++++  +   +  +++ L+ +F+ +G   +A E+Y  M   
Sbjct: 284 SIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVAR 343

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             + D  TY  +I    K  RL  A ++   M  +   P+   ++ L++S  KA R+D  
Sbjct: 344 GIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNG 403

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M+++ E+   G       Y +L++ + ++GKL+ A  L+ EM   G  P+   + ++++ 
Sbjct: 404 MRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDG 463

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
              +G+L  A+ IF  M+++  +     Y+ ++    ++ +VD A  L+ S++  G++P 
Sbjct: 464 LCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPD 523

Query: 480 LSTYTALLTLLAK-----------RKL-------VDVAAKILL----------------- 504
           + TY  ++  L K           RK+        D    IL+                 
Sbjct: 524 VLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIE 583

Query: 505 EMKTMGYSVDVSASDVLMVYIKDGSVDHA 533
           EMK  G++ D S   +++V + DG +D  
Sbjct: 584 EMKMRGFAADASTIKMVVVMLSDGRLDKT 612



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 165/362 (45%), Gaps = 13/362 (3%)

Query: 232 ISLFSAYNRVIQYLAKADKL-EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
           I+ F    RV + +A  D++ EM Y           + +  + N L+     KG   +A 
Sbjct: 146 INGFCLEGRVSEAVALVDRMVEMKY-----------RPNVVTVNTLINGLCLKGRVTEAL 194

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            + + M K  C  +  TY  ++  + KSG    A+ LF++M+ER+ + S   ++ ++DS+
Sbjct: 195 VLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSL 254

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K G LD ++ ++ EM+  G +     Y S+I      G+ D   ++  EM      PN 
Sbjct: 255 CKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNV 314

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             F+ +I+   K GKL  A  ++ +M   G  P   TYS L++      ++  A ++ + 
Sbjct: 315 VTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDL 374

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGS 529
           M S G  P + TY+ L+    K K VD   ++  E+ + G   D V+ + ++  + + G 
Sbjct: 375 MVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGK 434

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           ++ A    + M S G+  +      L +    N   + A  + E   +S   + + +Y  
Sbjct: 435 LNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNI 494

Query: 590 VL 591
           ++
Sbjct: 495 II 496



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/420 (22%), Positives = 187/420 (44%), Gaps = 10/420 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAK 247
           QS  +P    +  LF  +   +++D +L    EM      NGI  ++++  N +I    +
Sbjct: 62  QSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEM----DLNGIEHNMYT-MNIMINCFCR 116

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
             KL  ++    + L    + +T +++ L+  F  +G   +A  + + M + +   +  T
Sbjct: 117 KRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVT 176

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
              +I  L   GR+  A+ L   M +     +   +  +++ M K+G    ++ ++ +M+
Sbjct: 177 VNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKME 236

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
               + S   Y  +I+S  K G LD AL L++EM + G + +   ++ II      G+ D
Sbjct: 237 ERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWD 296

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
               +  +M     +P   T+S L+++    G++  A +LYN M + G+ P   TY++L+
Sbjct: 297 DGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLI 356

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR 546
               K   +  A ++L  M + G   ++    +L+  Y K   VD+ +R    + S G+ 
Sbjct: 357 DGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLV 416

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            +      L +   ++     AK L +  V       +V Y  +L  L  C + + ++ L
Sbjct: 417 ADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGL--CDNGELQKAL 474



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 113/279 (40%), Gaps = 3/279 (1%)

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +++ AI LF+ M +    PS   F+ L  ++ +    D  +    EM   G   +     
Sbjct: 49  KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMN 108

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            +I  + +  KL  A  +       GF PN   F+ +I      G++  A+++   M   
Sbjct: 109 IMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEM 168

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
            + P   T + L+      G+V  A+ L + M   G      TY  +L  + K     +A
Sbjct: 169 KYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALA 228

Query: 500 AKIL--LEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
             +   +E +++  SV V  S V+    KDG++D AL     M   GI+ +      +  
Sbjct: 229 LDLFRKMEERSIKASV-VQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIG 287

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               +  ++    +L   +      ++V +++++   V+
Sbjct: 288 GLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVK 326


>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 476

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 104/459 (22%), Positives = 189/459 (41%), Gaps = 41/459 (8%)

Query: 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSL----------FDE---- 222
           S+ +   FRW +R + +    E ++ + ++L  +   +    +          +DE    
Sbjct: 17  SEHAFHFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWV 76

Query: 223 -MVHDSSKNGI-----------------SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264
            M+    K GI                     +YN + + + +  +  M    F K+L  
Sbjct: 77  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMGKRYFNKMLSE 136

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
             +    ++NV++  F   G    A   +E M+  E S D  TY  MI    +  +++ A
Sbjct: 137 GIEPTRHTFNVMIWGFFLSGKVETAIRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 196

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
            K F EMK RN  P+   + +L+       ++D ++++  EM+G G +P+A  Y +L+  
Sbjct: 197 EKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGTKPNAITYSTLLPG 256

Query: 385 YAKAGKLDTALRLWDEMRIAGFRP-NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
              A K+  A  +  EM      P +  +F  +I SH KSG LD A  +   M R     
Sbjct: 257 LCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPT 316

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LRPGL------STYTALLTLLAKRKL 495
               Y  L+E    +GQ D A+KL + +      LRP        S +  ++  L     
Sbjct: 317 EAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIMLRPQSTLHLEPSAHNPMIEYLCNNGQ 376

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
              A  ++ ++  +G     + + ++  + ++GS D A   L+ M    + +       L
Sbjct: 377 ASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSL 436

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            +S +K      AK  L++ +E+    D  L+ SV+  L
Sbjct: 437 VQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESL 475


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 172/367 (46%), Gaps = 9/367 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           YN V+  L KA     +Y   K++ D      D  +Y+ ++  F  +G   +A EI   M
Sbjct: 12  YNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREM 71

Query: 297 -EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
             +   + D  TY  ++  L + G++D A ++ +EMK +   P    F++L+     A +
Sbjct: 72  VTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARK 131

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI---AGFRPNFGL 412
           +D ++K+Y E+     R  A    +LI    +  ++  A  L+ EM +     ++P+   
Sbjct: 132 VDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVT 191

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +T +I+   KSG L+ AM +   ME    +P   TYS LL     +G +D A+ L+  MT
Sbjct: 192 YTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMT 251

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVD 531
           S G  P + TYT L+  L     VD A  ++ EM       D VS + +L  Y + G ++
Sbjct: 252 SKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIE 311

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV--DLVLYTS 589
            A +  + M +     +      L       +  E A+ LLE  +++AA +  D+V Y+ 
Sbjct: 312 EAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLEN-MKTAAGIDPDVVTYSI 370

Query: 590 VLAHLVR 596
           V+A   R
Sbjct: 371 VVAGYSR 377



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 197/442 (44%), Gaps = 48/442 (10%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
           + D    +  EMV   +++G++     Y  V+  L +  K++ +    +++     + D 
Sbjct: 60  EMDRACEILREMV---TRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDK 116

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            +++ L+T + N     +A ++Y+ +    C LD  +   +I  L +  R+  A +LFQE
Sbjct: 117 FTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQE 176

Query: 331 MKERN---FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           M+ R    ++P    + +L+D   K+G L+ +MK+   M+G    P+   Y SL+    K
Sbjct: 177 MEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCK 236

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMII------------------------------ 417
           AG LD AL L+  M   G  PN   +T +I                              
Sbjct: 237 AGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVS 296

Query: 418 -----ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM- 471
                + + + G+++ A  +F +M     LP   TY+CL+    ++ +++ A  L  +M 
Sbjct: 297 YNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMK 356

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSV 530
           T+AG+ P + TY+ ++   ++ K    AA+ + EM     + + V+ S ++    K G V
Sbjct: 357 TAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRV 416

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           +HA+  L+ +    + T   ++  L   C  +   E A  LLE  V    +  +  + SV
Sbjct: 417 NHAMEVLKNVDKPDVVTYTIVIEGL---CGTDR-TEEALTLLEEMVNKRVEPSVGTFNSV 472

Query: 591 LAHLVRCQDEQNERHLMAILSA 612
           +  L R  D      L+  ++A
Sbjct: 473 IGALCRLGDMDEAWKLLVAMAA 494



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 145/315 (46%), Gaps = 8/315 (2%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  L   L ++ D D  L LF  M   +SK  +     Y  +I  L  A K++ 
Sbjct: 221 VPNVVTYSSLLHGLCKAGDLDQALDLFRRM---TSKGCVPNVVTYTTLIHGLCAAHKVDA 277

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++  + C  DT SYN L+  +   G   +A ++++ M    C  D  TY  ++ 
Sbjct: 278 ARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVR 337

Query: 314 SLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
               + RL+ A  L + MK      P    ++ +V    +A R   + +   EM      
Sbjct: 338 GFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVA 397

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+A  Y SLI+   KAG+++ A+ +   +     +P+   +T++IE    + + + A+++
Sbjct: 398 PNAVTYSSLIDGLCKAGRVNHAMEVLKNVD----KPDVVTYTIVIEGLCGTDRTEEALTL 453

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
             +M      P+  T++ ++      G +D A KL  +M + GL PG+ TYT LL   ++
Sbjct: 454 LEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSR 513

Query: 493 RKLVDVAAKILLEMK 507
              +++A ++   M+
Sbjct: 514 TGRMEIAYELFEVMR 528



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 102/213 (47%), Gaps = 13/213 (6%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y+ L+      G    A E+ ++++K     D  TY ++I  L  + R + A+ L +EM
Sbjct: 402 TYSSLIDGLCKAGRVNHAMEVLKNVDKP----DVVTYTIVIEGLCGTDRTEEALTLLEEM 457

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             +   PS   F S++ ++ + G +D + K+ + M   G  P    Y +L+E +++ G++
Sbjct: 458 VNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRM 517

Query: 392 DTALRLWDEMR--------IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           + A  L++ MR         A   P    F+ +I    K+ ++D AM++  ++      P
Sbjct: 518 EIAYELFEVMRRKAKKSSSAANLVPEQA-FSALIRGLCKAREIDKAMAVVEELRSRECEP 576

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
                  +++    +G+ + A KL NS++  GL
Sbjct: 577 AEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 124/282 (43%), Gaps = 6/282 (2%)

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQ-GCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           P+   +  +V+ + KA     + +V  EM+ G    P    Y ++I  + K G++D A  
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 397 LWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           +  EM    G  P+   +T +++   + GK+D A  +  +M+  G  P   T+S L+   
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM---GYS 512
            ++ +VD A+KLY  + ++  R    + +AL+T L + + +  A ++  EM+      + 
Sbjct: 127 CNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWK 186

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            DV     L+  + K G+++ A++ L  M       N      L     K    + A  L
Sbjct: 187 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 246

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
                      ++V YT+++  L         R LM  ++AT
Sbjct: 247 FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTAT 288


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 148/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +J + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVJ-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +   M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 148/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   +J  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  +  EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 140/306 (45%), Gaps = 6/306 (1%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I +  +SG L  AI+ ++  KE  FR  F+    +++ + K          Y E   CG
Sbjct: 72  LITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWGFYEESLECG 131

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           +  S   +  L+ S+ K G++  A  ++D +   G RP+   F  ++  + K G LD   
Sbjct: 132 YPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGF 191

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +   M+ +G  P   TYS L+       ++D A +L++ M   GL P   T+T L+   
Sbjct: 192 RLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGH 251

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K   VD+A +I  +M +   S D+   + L+  + K G +  A      M   G++ + 
Sbjct: 252 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDK 311

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN---ERHL 606
                L +   K    E+A    +  ++   ++D V YT++++ L  CQ+ ++   E+ L
Sbjct: 312 ITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGL--CQEGRSVDAEKML 369

Query: 607 MAILSA 612
             +LS 
Sbjct: 370 REMLSV 375



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 136/300 (45%), Gaps = 2/300 (0%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K D   YN ++ L    G   +A ++   M K     D   Y  +I    K G + AA K
Sbjct: 309 KPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACK 368

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           LF EM+ +   P    + S++  + K+G++  + +++ EM   G  P    Y +LI+ Y 
Sbjct: 369 LFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYC 428

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           KAG++  A  + ++M   G  PN   +T + +   K+G++D+A  +  +M R G  P   
Sbjct: 429 KAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVY 488

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TY+ ++      G ++  +KL   M  AG  P   TYT L+    K   +  A ++L  M
Sbjct: 489 TYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIM 548

Query: 507 KTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNAL 564
                   +   +VLM  +   G ++   R + +M   GI  N      L +  C+KN +
Sbjct: 549 LNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNM 608



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 133/277 (48%), Gaps = 1/277 (0%)

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            + G LD  +KL  E+K +  +P   I+ +++  + K G +  + ++   M+  G  P  
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDN 347

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
            +Y ++I  + K G +  A +L+DEMR     P+   +T +I    KSGK+  A  +F +
Sbjct: 348 VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNE 407

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M   G  P   TY+ L++ +  +G++  A  ++N M   GL P + TYTAL   L K   
Sbjct: 408 MLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGE 467

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           +DVA ++L EM   G   +V   + ++  + K G+++  ++ +  M  +G   +      
Sbjct: 468 IDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTT 527

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           L ++  K      A  LL   +    +  LV +  ++
Sbjct: 528 LMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLM 564



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 149/334 (44%), Gaps = 4/334 (1%)

Query: 190 QSWYV-PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           + W V P +  Y  +     +  +      LFDEM     K  +     Y  VI  + K+
Sbjct: 339 RKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEM---RRKKIVPDIVTYTSVIHGICKS 395

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K+  +   F ++L    + D  +Y  L+  +   G   +AF ++  M +   + +  TY
Sbjct: 396 GKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTY 455

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +   L K+G +D A +L  EM  +  +P+   + ++V+ + K G ++ ++K+  EM  
Sbjct: 456 TALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDL 515

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P    Y +L+++Y K G++  A  L   M     +P    F +++     SG L+ 
Sbjct: 516 AGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLED 575

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
              +   M   G +P  +T++ L++ +     + +  ++Y +M   G+ P  +TY  L+ 
Sbjct: 576 GERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIK 635

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
              K + +  A  +  EM   GYSV  +  D L+
Sbjct: 636 GHCKARNMKEAWFLHKEMVEKGYSVTAATYDALI 669



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 1/291 (0%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D   Y  +I  L K+G +  A +L + M++    P   ++ +++    K G +  + K++
Sbjct: 311 DEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLF 370

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            EM+     P    Y S+I    K+GK+  A  +++EM + G  P+   +T +I+ + K+
Sbjct: 371 DEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKA 430

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G++  A S+   M + G  P   TY+ L +    +G++D A +L + M+  GL+P + TY
Sbjct: 431 GEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTY 490

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGS 542
             ++  L K   ++   K++ EM   G+  D      LM  Y K G +  A   LR M +
Sbjct: 491 NTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLN 550

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
             ++        L      + + E  + L+E  +E     +   + S++  
Sbjct: 551 KRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQ 601



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 197/467 (42%), Gaps = 40/467 (8%)

Query: 175 NDSDTSLSLFRWAKRQSW--YVPGDE--CYVMLF-----DVLNESR-----------DFD 214
           ND    L+LF WAK QS   + P  E  C V+       D+    R           D  
Sbjct: 91  NDYPLVLNLFNWAKSQSQQQFHPTLESLCIVVHLSVASNDIQTAKRLVFEFCAKPKIDVS 150

Query: 215 GMLSLFDEMVHDSSKNGIS---LFSAYNRVI---QYLAKADKLEMSYCCFKKVLDSDCKI 268
               LF EM+  + K+  S   +F  Y +V+    ++ +A KL      F K+L     +
Sbjct: 151 KSFHLFTEMLIYTYKDWGSHPLVFDLYFQVLVENGFVLEAQKL------FHKLLRYGVVV 204

Query: 269 DTQSYNVLMTL----FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
              S N+ ++     F    +  K FE  E  E G C  +  +  +++  L + G++  A
Sbjct: 205 SVDSCNLFLSRLSCNFEGIKIAVKVFE--EFPELGVC-WNTVSCNIVLHCLCQLGKVREA 261

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
             L  +M +R   P    +  +V    + G LD  +K+  E++G G +P   +Y ++I  
Sbjct: 262 HNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILL 321

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
             K G++  A +L   MR  G  P+  ++T +I    K G +  A  +F +M R   +P 
Sbjct: 322 LCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPD 381

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TY+ ++     SG++  A +++N M   GL P   TYTAL+    K   +  A  +  
Sbjct: 382 IVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHN 441

Query: 505 EMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
           +M   G + +V     L   + K+G +D A   L  M   G++ N +    +     K  
Sbjct: 442 QMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIG 501

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
             E    L+E    +    D + YT+++    +  +      L+ I+
Sbjct: 502 NIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIM 548



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 119/286 (41%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    KA +++ ++    +++      +  +Y  L       G    A E+   M
Sbjct: 419 TYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEM 478

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     +  TY  ++  L K G ++  +KL +EM    F P    + +L+D+  K G +
Sbjct: 479 SRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEM 538

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++   M     +P+   +  L+  +  +G L+   RL + M   G  PN   F  +
Sbjct: 539 AKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSL 598

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++ +     +     I+  M   G +P  +TY+ L++ H  +  +  A  L+  M   G 
Sbjct: 599 MKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGY 658

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
               +TY AL+    KRK    A K+  EM+  G   +    D+ +
Sbjct: 659 SVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFV 704



 Score = 43.5 bits (101), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 58/132 (43%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +  ++N LM  +  K       EIY++M       D +TY ++I    K+  +  A  L 
Sbjct: 591 NATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLH 650

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM E+ +  +   + +L+    K  +   + K++ EM+  G      +Y   ++   + 
Sbjct: 651 KEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEE 710

Query: 389 GKLDTALRLWDE 400
           G  +  L L DE
Sbjct: 711 GNWEITLELCDE 722


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 150/336 (44%), Gaps = 4/336 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  ++ + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVI-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +   M+  
Sbjct: 141 ILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A  LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           + TYT ++    K+  V   +K+L EM+  GY  +V
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNV 416



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 149/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   +I  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ +  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKI 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M+ +G +P+   ++++I    K  K+D A ++F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 121/290 (41%), Gaps = 38/290 (13%)

Query: 297 EKGECSLDGSTY--ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           E  EC    S Y   +++ +  K G +  A  +F  + +   RPS   F +L++   K G
Sbjct: 126 ESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIG 185

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            LD   ++   MQ  G +P    Y  LI    K  K+D A  L+DEM   G  PN   FT
Sbjct: 186 DLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFT 245

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+ H K+G++D+AM I+  M     LP   TY+ L+      G +  A  L + M+  
Sbjct: 246 TLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMK 305

Query: 475 GLRPGLSTYT-----------------------------------ALLTLLAKRKLVDVA 499
           GL+P   TYT                                   AL++ L +      A
Sbjct: 306 GLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDA 365

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTN 548
            K+L EM ++G   ++    +++  + K G V    + L+ M   G   N
Sbjct: 366 EKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPN 415



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 91/211 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY  M
Sbjct: 208 TYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G+LP   T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYLPNVVT 418


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 203/478 (42%), Gaps = 47/478 (9%)

Query: 162 PKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFD 221
           P++    +  K  N + T    F     +S   P    +  L   L + + +  + SL++
Sbjct: 34  PQIAFFLRHCKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYN 93

Query: 222 EM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           +M +   S +  +L    N ++  L   ++L   +  F  +L      +  +YN L+   
Sbjct: 94  QMRLSGLSSDRCTL----NILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGL 149

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM------KER 334
             +    +A  ++  M+K  C+ D  TY  +I  L  +G ++ A+KL QEM       E 
Sbjct: 150 CMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEI 209

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
           N +P+   +  +VD + K GR D + +++ EM+  G  PS   Y SLI  +  AGK + +
Sbjct: 210 NCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEES 269

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGK----------------------------- 425
            RL DEM   G +P+   F ++I++  K GK                             
Sbjct: 270 KRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEG 329

Query: 426 ------LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
                 L+ A  +F  M   G  P   +Y+ L+  ++ + +V+ AMKLYN M   G RP 
Sbjct: 330 FCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPN 389

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
           + TY +LL  +     VD A K+   MK  G + +     + +  + K+  +  A++   
Sbjct: 390 VITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFT 449

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            + SS  +     +  L +   K    E+A  L E       + ++V YT ++    R
Sbjct: 450 ELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCR 507



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 175/377 (46%), Gaps = 4/377 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y ++ D L +    D    LF+EM    ++  I    +YN +I     A K E S     
Sbjct: 218 YNIIVDGLCKVGREDEAKQLFEEM---KTQGMIPSIISYNSLIHGFCCAGKWEESKRLLD 274

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++LD   + D  ++NVL+     +G   +A ++   M +     D  TY  +I      G
Sbjct: 275 EMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVG 334

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            L++A +LF  M  +   P    +  L++   K  +++ +MK+Y EM   G RP+   Y 
Sbjct: 335 DLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYD 394

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SL++    AGK+D A +L+  M+  G   N   + + ++   K+  L  AM +FT+++ +
Sbjct: 395 SLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSS 454

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
            F       +CL++    +G++++A +L+  +++ G  P + TYT ++    +   VD A
Sbjct: 455 NFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKA 514

Query: 500 AKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             ++ +M+  G + D+   + LM  + +   ++  ++ L  M    +  +      + + 
Sbjct: 515 NVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDM 574

Query: 559 CMKNALYESAKPLLETY 575
             K+  Y+    LL  +
Sbjct: 575 LSKDEKYQECLHLLPRF 591



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 119/300 (39%), Gaps = 9/300 (3%)

Query: 316 AKSGRLDA--AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            K+G + A  A+  F  M      PS + F  L+  + K         +Y +M+  G   
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
                  L+       +L      +  +   G+ PN   +  +I+      ++  A  +F
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS------AGLRPGLSTYTALL 487
             M++ G  P   TY  L++    +G ++ A+KL+  M +         +P + TY  ++
Sbjct: 163 LRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIV 222

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
             L K    D A ++  EMKT G    + S + ++  +   G  + + R L  M   G++
Sbjct: 223 DGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQ 282

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            +      L ++  K      AK LL   +ES    DLV Y S++       D  + R L
Sbjct: 283 PDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSAREL 342


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y  M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +     RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
          Length = 772

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/494 (21%), Positives = 201/494 (40%), Gaps = 51/494 (10%)

Query: 147 WGPELETQLDKLQFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLF 204
           W   L+  +  L  VP+  H  +   L    +SD +L  FRW +R   +    + ++ + 
Sbjct: 102 WTTRLQNSIRSL--VPQFDHSLVWNVLHGSRNSDHALQFFRWVERAGLFRHDRDTHLKII 159

Query: 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264
           ++L  +   +    +  +M     +    LF     +I    KA  ++ S   F+K+ + 
Sbjct: 160 EILGRASKLNHARCILLDMPKKGVEWDEDLFVL---LIDSYGKAGIVQESVKVFQKMKEL 216

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
             +   +SY+ L  + L +G    A   + +M          TY +MI     S +++ A
Sbjct: 217 GVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETA 276

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
            + F+EMKER   P    + ++++   +  +++ + K ++EM+G    P+   Y ++I+ 
Sbjct: 277 NRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKG 336

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNF---------------------------------- 410
           Y   G++D  LRL++EM+  G +PN                                   
Sbjct: 337 YVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPK 396

Query: 411 --GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
              +F  +I    K+G+LD A  +   M R         Y  L+E    SG  D A+KL 
Sbjct: 397 DNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLL 456

Query: 469 NSMTSAG--LRPG------LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           + +      LRP        S Y  ++  L        A  +  ++   G    ++ +++
Sbjct: 457 DKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNL 516

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  + K+G+ + A   L+ MG   +       R L ES +K      AK  L+  +E+  
Sbjct: 517 IRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGH 576

Query: 581 KVDLVLYTSVLAHL 594
             D  L+ SV+  L
Sbjct: 577 IPDSSLFRSVMESL 590



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 155/365 (42%), Gaps = 11/365 (3%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    +  K+E +   F ++   + +    SY  ++  +++ G       ++E M
Sbjct: 294 TYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEM 353

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN-IFASLVDSMGKAGR 355
           +      +  TY  ++P L    ++  A  + +EM ER   P  N IF  L+    KAG+
Sbjct: 354 KSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQ 413

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM--RIAGFRPNFGL- 412
           LD +  V   M        A  Y  LIE++ K+G  D A++L D++  +    RP   L 
Sbjct: 414 LDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLE 473

Query: 413 -----FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
                + +IIE    SG+   A ++F  + + G +  P  ++ L+  H+  G  +SA ++
Sbjct: 474 MESSGYNLIIEYLCNSGQTSKAETLFRQLMKKG-VQDPIAFNNLIRGHSKEGAPESAFEI 532

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIK 526
              M    +      Y  L+    K+     A   L  M   G+  D S    V+    +
Sbjct: 533 LKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFE 592

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
           DG +  A R +  M   G++ N  +V ++ E+ +     E A   ++  + +  + D   
Sbjct: 593 DGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALGRIDLLMNNGCEPDFDG 652

Query: 587 YTSVL 591
             SVL
Sbjct: 653 LLSVL 657



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 7/223 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS----SKNGISL-FSAYNRVIQYLAKADKLEMS 254
           Y +L +   +S  +D  + L D+++        +N + +  S YN +I+YL  + +   +
Sbjct: 436 YGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKA 495

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F++++    + D  ++N L+     +G P  AFEI + M + E   +   Y L+I S
Sbjct: 496 ETLFRQLMKKGVQ-DPIAFNNLIRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIES 554

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K G    A      M E    P  ++F S+++S+ + GR+ T+ +V   M   G + +
Sbjct: 555 FLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKEN 614

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF-GLFTMI 416
             +   ++E+    G ++ AL   D +   G  P+F GL +++
Sbjct: 615 MDLVAKILEALLLRGHVEEALGRIDLLMNNGCEPDFDGLLSVL 657



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 146/342 (42%), Gaps = 29/342 (8%)

Query: 214 DGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQ 271
           D  L LF+EM     K N ++    Y+ ++  L   +K+  +    K++++      D  
Sbjct: 344 DDGLRLFEEMKSFGIKPNAVT----YSTLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNS 399

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
            +  L+T     G    A ++ ++M +     +   Y ++I +  KSG  D A+KL  ++
Sbjct: 400 IFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKL 459

Query: 332 KERN--FRP---------SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
            E+    RP          +N+    + + G+  + +T  +  M+ +G    P A  + +
Sbjct: 460 IEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMK-KGV-QDPIA--FNN 515

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRP---NFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           LI  ++K G  ++A  +   ++I G R        + ++IES  K G+   A +    M 
Sbjct: 516 LIRGHSKEGAPESAFEI---LKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMI 572

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G +P  S +  ++E     G++ +A ++ N+M   G++  +     +L  L  R  V+
Sbjct: 573 ENGHIPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVE 632

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRF 539
            A   +  +   G   D     +L V    G    AL+ L F
Sbjct: 633 EALGRIDLLMNNGCEPDFDG--LLSVLCAKGKTIAALKLLDF 672


>gi|115456295|ref|NP_001051748.1| Os03g0824100 [Oryza sativa Japonica Group]
 gi|113550219|dbj|BAF13662.1| Os03g0824100, partial [Oryza sativa Japonica Group]
          Length = 691

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 133/579 (22%), Positives = 236/579 (40%), Gaps = 26/579 (4%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD +L LF EM HD S +     + YN ++   A     + S    + +L++    DT S
Sbjct: 52  FDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTAS 111

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y  ++  F   G   +  E++  M     + D S Y  ++ +    G    A+ + ++M+
Sbjct: 112 YRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQ 171

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P+   +  L+D  G+ GR D   +++ EM+     P    Y  L   +   G   
Sbjct: 172 ADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMR-TTVPPDTATYNVLFRVFGDGGFFK 230

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             + L+ +M  +   P+      ++ +  + G  + A  +   +   G +PT   Y+ L+
Sbjct: 231 EVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLV 290

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGY 511
           E    +   + A   +N MT  G  P + TY AL    AK  L   A  I   M      
Sbjct: 291 EALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAI 350

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
             D  + D L+  Y +   +D A++    M  S    +   +  +  + C+   + ES +
Sbjct: 351 QKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 410

Query: 570 PLLETYVESAAKV-DLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA-HAFLCGLFTG 627
              E  ++S   V  ++ Y  +L+   R     +   L+  +   +  + H  +  +  G
Sbjct: 411 QFEE--LQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKG 468

Query: 628 P--EQRKQPVLSFV--REFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAY 683
              +     ++ +V       G DY L       F N LL+ L   GQ  RA  V   A 
Sbjct: 469 EYDDDSNWQMVEYVLDNSNLEGCDYSLR------FFNALLDVLWWFGQKGRAARVLDQAL 522

Query: 684 ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGP 743
           +  LFP+ +  D  + WS DV  +SVG +L+AV   L++   R+     +P+   +V   
Sbjct: 523 KYGLFPE-LFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDEDLPQLASVV--- 578

Query: 744 TLKIVIAQM-LSSVESPFEVSKVVLRAPGDSVMEWFKKP 781
              ++  QM  S+V     ++KVV     D++   F  P
Sbjct: 579 ---VLRGQMEKSTVTRGLPIAKVVYSFLNDTLSSSFHYP 614



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 112/273 (41%), Gaps = 20/273 (7%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS-----FNIFASLVDSMGKAGRLDTSMK 361
           +Y  +I + A++   + A +L  +MK     P+     F++   L   M    R D S  
Sbjct: 14  SYTSLIAAYARNALHEEARELLDQMKASGVAPTDPPVPFDMLLGLFAEM----RHDPSPS 69

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           V         RP    Y +L+ + A     D +  L   M  AG  P+   +  I+++ A
Sbjct: 70  V---------RPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFA 120

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
            +G L     +F +M   G  P PS Y  L+E H   G    A+ +   M + G  P  +
Sbjct: 121 GAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAA 180

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRWLRFM 540
           TY  LL L  ++   D   ++  EM+T     D +  +VL     DG      +   + M
Sbjct: 181 TYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGDGGFFKEVVELFQDM 239

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
             S +  +      +  +C +  L+E A+ +L+
Sbjct: 240 LHSEVEPDIDTCENVMVACGRGGLHEDAREVLD 272



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 33/241 (13%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHD---------------------------- 226
           P    Y +LF V  +   F  ++ LF +M+H                             
Sbjct: 211 PDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREV 270

Query: 227 ----SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
               +++  +    AY  +++ L  A   E +Y  F  + +       ++YN L   F  
Sbjct: 271 LDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAK 330

Query: 283 KGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
            GL  +A  I+  M        D  +++ +I +  +  +LD A+K + EM++  F P   
Sbjct: 331 GGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDER 390

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
               ++++   AG +D S + + E+Q     PS   Y  ++  YA+  +   A  L +EM
Sbjct: 391 SLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 450

Query: 402 R 402
           +
Sbjct: 451 K 451


>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
 gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
          Length = 700

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 139/298 (46%), Gaps = 3/298 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +   V  + RD D    LFDEM+    K     FS      +    ADK   +   F+
Sbjct: 179 YNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADK---AVEWFE 235

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+     + D  + + ++  +   G   KA  +Y+    GE  LD + +  +I     +G
Sbjct: 236 KMPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAG 295

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D  + +++EMK    +P+  I+  L+D+MG+A R     K Y ++   G  PS   Y 
Sbjct: 296 NFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYA 355

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +L+ +Y +A   + A +++ EM+  G   N  L+  I+   A  G +D A+ IF DM+ +
Sbjct: 356 ALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSS 415

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           G  P   T+S ++ + +  G+V  A    N M  AG +P +   T+L+    K + +D
Sbjct: 416 GIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRID 473



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/499 (22%), Positives = 213/499 (42%), Gaps = 55/499 (11%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y + +    K   LD A KLF EM ER  +P    F++++         D +++ + +M 
Sbjct: 179 YNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWFEKMP 238

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P      ++I+SY +AG ++ AL L+D  R   +R +   F+ +I  +  +G  D
Sbjct: 239 SFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFD 298

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             ++++ +M+  G  P    Y+ LL+    + +     K Y  +   GL P   TY ALL
Sbjct: 299 GCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALL 358

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIR 546
               + +  + A KI  EMK  G  ++V   + ++    D G VD A+     M SSGI+
Sbjct: 359 HAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIK 418

Query: 547 TNNFIVRQL---FESCMK--------NALYESA--------KPLLETYVESAAKVDLVLY 587
            +++    +   F  C K        N ++E+           L++ Y ++    D+V  
Sbjct: 419 PDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVNT 478

Query: 588 TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFV-------- 639
            + +  LV   D++    L+ +++ T ++  + L        +R  P L +V        
Sbjct: 479 FNRIFELVITPDDRFCGCLLNVMTQTPNEELSKLVKC----AERANPKLGYVVKLLVEEQ 534

Query: 640 ----------REFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFP 689
                      + F  I  E+++     + N L++  + +  + RA  +  +    +++ 
Sbjct: 535 DSEGNFKNEATDLFDSISTEVKKA----YCNCLIDLCIKLNMLERACELLDLGLTLEIYT 590

Query: 690 KAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTG------- 742
             I+      WSL++++LS GAA+ A+   ++   K +     +P  + + TG       
Sbjct: 591 N-IMSRTSTQWSLNLKSLSPGAAMTALHIWMNDLSKVLEAGEQLPPLLGINTGHGKHKYS 649

Query: 743 -PTLKIVIAQMLSSVESPF 760
              L  V    L  + SPF
Sbjct: 650 EKGLANVFESYLKELNSPF 668


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 103/450 (22%), Positives = 191/450 (42%), Gaps = 40/450 (8%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y +L     + RD + ++ L  EM     +  +    +Y   I+ L +A +LE 
Sbjct: 203 VPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVY---SYTICIRVLGQAGRLEE 259

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y   +K+ +  CK D  +  VL+ +  + G    A +++  M+  +   D  TY  ++ 
Sbjct: 260 AYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLD 319

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
               SG   +  +++  +K   +  +   + + VD++ + GR+D ++ V+ EM+  G  P
Sbjct: 320 KCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIP 379

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH------------- 420
               Y SLI  + KA + + AL L++ M I G  PN     + I  H             
Sbjct: 380 QQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRY 439

Query: 421 ----------------------AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
                                 AK+G+L +A  +F +++  G  P   TY+ +++  + +
Sbjct: 440 ELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKA 499

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSA 517
              D AMK++  M      P +    +L+ +L K    + A KI  E+K M     D + 
Sbjct: 500 SNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTY 559

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           + +L    ++G V   ++ L  M S+    N      + +   KN     A  +L +   
Sbjct: 560 NTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTM 619

Query: 578 SAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           +    DL  Y +V+  LV+ +D  +E   M
Sbjct: 620 NGCMPDLSSYNTVMYGLVK-EDRLDEAFWM 648



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 157/317 (49%), Gaps = 1/317 (0%)

Query: 241  VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
            +I++L K  +   ++   KK  +    + T SYN L+   +++ L   A E++  M++  
Sbjct: 737  IIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLG 796

Query: 301  CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            C  D  TY L++ ++ KS R++  +K+ +EM  + ++ ++  + +++  + K+  LD ++
Sbjct: 797  CDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAI 856

Query: 361  KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             +Y ++   G  P+   Y  L++   K G ++ A  L+DEM   G  PN  ++ +++  +
Sbjct: 857  NLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGY 916

Query: 421  AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
              +G  +    +F  M   G  P   +Y+ +++   + G+++  +  +  +T  GL P L
Sbjct: 917  RIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDL 976

Query: 481  STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRF 539
             TY  L+  L K   ++ A  +  +M+  G + ++   + L++Y+ K G    A +    
Sbjct: 977  ITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEE 1036

Query: 540  MGSSGIRTNNFIVRQLF 556
            + + G + N F    L 
Sbjct: 1037 LLAKGWKPNVFTYNALI 1053



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 4/309 (1%)

Query: 178  DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
            D +  LF   KR     P +  Y ++ D + +S   + ML + +EM +   K   S +  
Sbjct: 783  DIAEELFSEMKRLGC-DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYK---STYVT 838

Query: 238  YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            YN +I  L K+  L+ +   + +++         +Y  L+   L  G    A  +++ M 
Sbjct: 839  YNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEML 898

Query: 298  KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            +  C  + + Y +++     +G  +   +LF+ M E+   P    +  ++D++   GRL+
Sbjct: 899  ECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLN 958

Query: 358  TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              +  + ++   G  P    Y  LI    K+G+L+ AL L+++M   G  PN   +  +I
Sbjct: 959  DGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLI 1018

Query: 418  ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                K+GK   A  ++ ++   G+ P   TY+ L+  ++ SG  ++A   Y  M   G R
Sbjct: 1019 LYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCR 1078

Query: 478  PGLSTYTAL 486
            P  STY  L
Sbjct: 1079 PNSSTYMQL 1087



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 177/400 (44%), Gaps = 6/400 (1%)

Query: 186 WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245
           W  + S   P    Y+ L D   +S D   +  +++ +  D   + +  ++A    +  L
Sbjct: 300 WKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTA---AVDAL 356

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
            +  +++ +   F ++          SYN L++ FL      +A E++  M     + +G
Sbjct: 357 CQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNG 416

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            T+ L I    KSG    A+K ++ MK +   P      +++  + K GRL  + +V+ E
Sbjct: 417 YTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHE 476

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           ++  G  P    Y  +I+  +KA   D A++++ EM      P+      +I+   K+G+
Sbjct: 477 LKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGR 536

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
            + A  IF +++     PT  TY+ LL      G+V   M+L   M S    P + TY  
Sbjct: 537 GNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNT 596

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSG 544
           +L  L K   V+ A  +L  M   G   D+S+ + +M   +K+  +D A  W+       
Sbjct: 597 VLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAF-WMFCQMKKV 655

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYV-ESAAKVD 583
           +  +   V  +  S +++ L + A   +  Y+ +  +KVD
Sbjct: 656 LAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVD 695



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/484 (19%), Positives = 197/484 (40%), Gaps = 40/484 (8%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           P  E ++ +      +VH+ ++     D + +L LF    RQ   V   E    + +++ 
Sbjct: 54  PPCEERVSRPGDAGNVVHMLRSAAAA-DPEEALELFLSVARQPRVVHTTESCNYMLELMR 112

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
                  +  +FD M     K  +  F     V   +     L  +      + ++   +
Sbjct: 113 AHGRVGDVAQVFDLMQRQIIKANVGTFCT---VFGAVGVEGGLRSAPVALPVMKEAGIVL 169

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEK------------------------------ 298
           +  +YN L+   +  G   +A ++Y++M                                
Sbjct: 170 NAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLL 229

Query: 299 GECSLDGS-----TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           GE    G      +Y + I  L ++GRL+ A ++ ++M+E   +P       L+  +  A
Sbjct: 230 GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDA 289

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           GRL  +  V+ +M+    +P    Y++L++    +G   +   +W+ ++  G+  N   +
Sbjct: 290 GRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSY 349

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
           T  +++  + G++D A+ +F +M++ G +P   +Y+ L+     + + + A++L+N M  
Sbjct: 350 TAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNI 409

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD-VLMVYIKDGSVDH 532
            G  P   T+   +    K      A K    MK+ G   DV A + VL    K G +  
Sbjct: 410 HGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGM 469

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A R    + + GI  +N     + + C K +  + A  +    +E+    D++   S++ 
Sbjct: 470 AKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLID 529

Query: 593 HLVR 596
            L +
Sbjct: 530 MLYK 533



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 167/410 (40%), Gaps = 37/410 (9%)

Query: 222  EMVHDSSKNG-ISLFSAYNRVIQYLAKADKLEMSY---CCFKKVL--------------- 262
            +M++  + NG +   S+YN V+  L K D+L+ ++   C  KKVL               
Sbjct: 612  DMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKVLAPDYATVCTILPSFV 671

Query: 263  -----------------DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
                               D K+D  S + LM   L +    K+ E  E++      LD 
Sbjct: 672  RSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDD 731

Query: 306  STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
                 +I  L K     AA +L ++ +          + +L+  +     +D + +++ E
Sbjct: 732  LFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSE 791

Query: 366  MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
            M+  G  P    Y  ++++  K+ +++  L++ +EM   G++  +  +  II    KS  
Sbjct: 792  MKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKM 851

Query: 426  LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
            LD A++++  +   GF PTP TY  LL+     G ++ A  L++ M   G  P  + Y  
Sbjct: 852  LDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNI 911

Query: 486  LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG 544
            LL         +   ++   M   G + D+ +  V++     DG ++  L + + +   G
Sbjct: 912  LLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMG 971

Query: 545  IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            +  +      L     K+   E A  L     +     +L  Y S++ +L
Sbjct: 972  LEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYL 1021


>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
           [Vitis vinifera]
 gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 167/371 (45%), Gaps = 18/371 (4%)

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI----SLFSAY 238
           +  W + Q W+   +  ++ML     +  DF+    +F +M        +    +L  AY
Sbjct: 126 ILEWLQTQPWWDFSEMDFLMLVTAYGKQGDFNKAERVFGDMHKKGYSPSVISHTALMEAY 185

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-- 296
            +  QY    +K E     F+++L S  +    +Y +++ +F+      +A E +E++  
Sbjct: 186 GKGKQY----NKAE---SVFRRMLSSGPEPSALTYQLILKIFVEGNKFKEAEETFETLLD 238

Query: 297 -EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
            EK     D   + +MI    K+G  + A K+F  M+ER    S   + SL   M     
Sbjct: 239 DEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTVTYNSL---MSFETN 295

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
                K Y +MQ  G RP    Y  LI +Y KA + + AL +++EM  AG RP    + +
Sbjct: 296 YKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI 355

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           ++++ A SG +D A ++F  M R    P   +Y+ +L  + ++  ++ A K +  +   G
Sbjct: 356 LLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 415

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
             P + TY  L+   AK   ++   +   EM+  G   + +    +M  Y K+     A+
Sbjct: 416 FEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAYGKNKDFGSAV 475

Query: 535 RWLRFMGSSGI 545
            W + MG  G+
Sbjct: 476 FWFKEMGFCGV 486



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 131/319 (41%), Gaps = 42/319 (13%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y ++  +  E   F      F+ ++ D           ++ +I    KA   E +
Sbjct: 208 PSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKA 267

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF-EIYESMEKGECSLDGSTYELMIP 313
              F  + +      T +YN LM+   N    YK   + Y+ M++     D  +Y L+I 
Sbjct: 268 RKIFGLMRERGVPQSTVTYNSLMSFETN----YKEVSKTYDQMQRAGLRPDVVSYALLIN 323

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM--------- 364
           +  K+ R + A+ +F+EM +   RP+   +  L+D+   +G +D +  V+          
Sbjct: 324 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTP 383

Query: 365 ----------------EMQGC----------GHRPSAPMYVSLIESYAKAGKLDTALRLW 398
                           +M+G           G  P+   Y +LI+ YAK   L+  +  +
Sbjct: 384 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKY 443

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           +EM++ G + N  ++T +++++ K+     A+  F +M   G  P     + LL +  + 
Sbjct: 444 EEMQVHGIKANQAIYTAMMDAYGKNKDFGSAVFWFKEMGFCGVPPDRKATNILLSLAKTE 503

Query: 459 GQVDSAMKL--YNSMTSAG 475
            + + A  L  Y+S  S G
Sbjct: 504 AEKEEANLLVGYSSKYSNG 522



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 117/261 (44%), Gaps = 7/261 (2%)

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           F  LV + GK G  + + +V+ +M   G+ PS   + +L+E+Y K  + + A  ++  M 
Sbjct: 143 FLMLVTAYGKQGDFNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRML 202

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT---DMERAGFLPTPSTYSCLLEMHASSG 459
            +G  P+   + +I++   +  K   A   F    D E++   P    +  ++ M+  +G
Sbjct: 203 SSGPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAG 262

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
             + A K++  M   G+     TY +L++     K V   +K   +M+  G   DV +  
Sbjct: 263 NYEKARKIFGLMRERGVPQSTVTYNSLMSFETNYKEV---SKTYDQMQRAGLRPDVVSYA 319

Query: 520 VLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
           +L+  Y K    + AL     M  +G+R  +     L ++   + + + A+ + ++    
Sbjct: 320 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRD 379

Query: 579 AAKVDLVLYTSVLAHLVRCQD 599
               D+  YT++L+  V   D
Sbjct: 380 RCTPDICSYTTMLSAYVNASD 400



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 17/224 (7%)

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           F M++ ++ K G  + A  +F DM + G+ P+  +++ L+E +    Q + A  ++  M 
Sbjct: 143 FLMLVTAYGKQGDFNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRML 202

Query: 473 SAGLRPGLSTYTALLTLLA---KRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
           S+G  P   TY  +L +     K K  +   + LL+ +      D     +++ +Y K G
Sbjct: 203 SSGPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAG 262

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQL--FESCMKNALYESAKPLLETYVESAAKVDLVL 586
           + + A +    M   G+  +      L  FE+      Y+      +    +  + D+V 
Sbjct: 263 NYEKARKIFGLMRERGVPQSTVTYNSLMSFETN-----YKEVSKTYDQMQRAGLRPDVVS 317

Query: 587 YTSVLAHLVRCQDEQN-----ERHLMAILSATKHKAHAFLCGLF 625
           Y  ++    + + E+      E  L A +  T HKA+  L   F
Sbjct: 318 YALLINAYGKARREEEALAVFEEMLDAGVRPT-HKAYNILLDAF 360


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 202/450 (44%), Gaps = 18/450 (4%)

Query: 112 VEPGFD-DHVMVGGIKKPFLNASAVAKIVEVVNRW-KWG-PELETQLDKLQFVPKMVHIT 168
           V  G++ D ++   + K F     V K V V+    K+G P++      +    KM  I 
Sbjct: 112 VRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRID 171

Query: 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS 228
            A +V++             R   + P    Y ++   L      D  L + D+++ D+ 
Sbjct: 172 DATRVLD-----------RMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNC 220

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           +  +     Y  +I+       ++ +     ++L    K D  +YN ++     +G+  +
Sbjct: 221 QPTVI---TYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDR 277

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           AFE+  ++E   C  D  +Y +++ +L   G+ +   KL  +M      P+   ++ L+ 
Sbjct: 278 AFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILIT 337

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
           ++ + G+++ +M +   M+  G  P A  Y  LI ++ + G+LD A+   + M   G  P
Sbjct: 338 TLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 397

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +   +  ++ +  K+GK D A+ IF  +   G  P  S+Y+ +     SSG    A+ + 
Sbjct: 398 DIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMI 457

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD-VLMVYIKD 527
             M S G+ P   TY ++++ L +  +VD A ++L++M++  +   V   + VL+ + K 
Sbjct: 458 LEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKA 517

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
             ++ A+  L  M  +G R N      L E
Sbjct: 518 HRIEDAIDVLDSMVGNGCRPNETTYTVLIE 547



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 1/329 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN L+  F        A  + + M   + S D  TY +MI SL   G+LD A+K+ 
Sbjct: 153 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVL 212

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            ++   N +P+   +  L+++    G +D ++K+  EM   G +P    Y ++I    K 
Sbjct: 213 DQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKE 272

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G +D A  +   + + G  P+   + +++ +    GK +    + T M      P   TY
Sbjct: 273 GMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTY 332

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S L+      G+++ AM L   M   GL P   +Y  L+    +   +DVA + L  M +
Sbjct: 333 SILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 392

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D V+ + VL    K+G  D AL     +G  G   N+     +F +   +     
Sbjct: 393 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 452

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           A  ++   V +    D + Y S+++ L R
Sbjct: 453 ALHMILEMVSNGIDPDEITYNSMISCLCR 481



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 151/331 (45%), Gaps = 5/331 (1%)

Query: 279 LFLNKGLPYKAFEIYESMEK-GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
            F  + +P KA  + E +EK G+   D   Y  +I    K  R+D A ++   M+ ++F 
Sbjct: 130 FFTLRNVP-KAVRVMEILEKFGQ--PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS 186

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P    +  ++ S+   G+LD ++KV  ++     +P+   Y  LIE+    G +D AL+L
Sbjct: 187 PDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 246

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
            DEM   G +P+   +  II    K G +D A  +  ++E  G  P   +Y+ LL    +
Sbjct: 247 LDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLN 306

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G+ +   KL   M S    P + TY+ L+T L +   ++ A  +L  MK  G + D  +
Sbjct: 307 QGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYS 366

Query: 518 SDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            D L+  + ++G +D A+ +L  M S G   +      +  +  KN   + A  +     
Sbjct: 367 YDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLG 426

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           E     +   Y ++ + L    D+    H++
Sbjct: 427 EVGCSPNSSSYNTMFSALWSSGDKIRALHMI 457



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 159/358 (44%), Gaps = 5/358 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AYN +I    K ++++ +     ++   D   DT +YN+++    ++G    A ++ + +
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C     TY ++I +    G +D A+KL  EM  R  +P    + +++  M K G +
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMV 275

Query: 357 DTSMKVY--MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           D + ++   +E++GC   P    Y  L+ +    GK +   +L  +M      PN   ++
Sbjct: 276 DRAFEMIRNLELKGC--EPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYS 333

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I +  + GK++ AM++   M+  G  P   +Y  L+      G++D A++   +M S 
Sbjct: 334 ILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 393

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
           G  P +  Y  +L  L K    D A +I  ++  +G S + S+ + +   +   G    A
Sbjct: 394 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 453

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           L  +  M S+GI  +      +     +  + + A  LL           +V Y  VL
Sbjct: 454 LHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVL 511



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 111/235 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L +  K+E +    K + +     D  SY+ L+  F  +G    A E  E+M
Sbjct: 331 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 390

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D   Y  ++ +L K+G+ D A+++F ++ E    P+ + + ++  ++  +G  
Sbjct: 391 ISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDK 450

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ + +EM   G  P    Y S+I    + G +D A  L  +MR   F P+   + ++
Sbjct: 451 IRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIV 510

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           +    K+ +++ A+ +   M   G  P  +TY+ L+E    +G    AM+L N +
Sbjct: 511 LLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 565



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 97/202 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I    +  +L+++    + ++   C  D  +YN ++      G   +A EI+  +
Sbjct: 366 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL 425

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  CS + S+Y  M  +L  SG    A+ +  EM      P    + S++  + + G +
Sbjct: 426 GEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMV 485

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++ ++M+ C   PS   Y  ++  + KA +++ A+ + D M   G RPN   +T++
Sbjct: 486 DKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVL 545

Query: 417 IESHAKSGKLDIAMSIFTDMER 438
           IE    +G    AM +  D+ R
Sbjct: 546 IEGIGFAGYRAEAMELANDLVR 567


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 197/460 (42%), Gaps = 44/460 (9%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           ++  S  +F+ A +   +  GD     + +      DF  +  L   +     +N + + 
Sbjct: 56  EAPISEQMFKSAPKMGSFKLGDSTLSSMIENYANLGDFASVEKLLSRI---RLENRVIIE 112

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
            ++  V +   KA   E +   F +++D   CK   +S+N ++ + +N+GL ++  E Y+
Sbjct: 113 RSFIVVFRAYGKAHLPEKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYD 172

Query: 295 SMEKGECSLD----GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            +     +++    G ++ L+I +L K G +D AI++F+ M E+   P    + +L+D +
Sbjct: 173 YVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGL 232

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K  R+D ++ +  EMQ  G  PS  +Y  LI+   K G L    +L D M + G  PN 
Sbjct: 233 CKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNE 292

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL------------------- 451
             +  +I      GKLD A+S+   M  +  +P   TY  L                   
Sbjct: 293 VTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLIS 352

Query: 452 -------LEMHASS---------GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
                  L  H  S         G+ + AM L+  M   G RP +  Y+A++  L +   
Sbjct: 353 MEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGK 412

Query: 496 VDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
            + A +IL  M + G   +V + S ++  + K G  + A++  R M  +G   N F    
Sbjct: 413 PNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSV 472

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           L +        + A  +    +    K D V Y+S++  L
Sbjct: 473 LIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGL 512



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 156/340 (45%), Gaps = 4/340 (1%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           + +AL  +   D ++ +FR    +   +P    Y  L D L +    D  + L DEM  +
Sbjct: 193 VIKALCKLGFVDRAIEVFRGMPEKKC-LPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSE 251

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
                  +   YN +I  L K   L         +    C  +  +YN L+     KG  
Sbjct: 252 GCSPSPVI---YNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKL 308

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            KA  + E M   +C  +  TY  +I  L K  R     +L   M+ER +R + +I++ L
Sbjct: 309 DKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVL 368

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +  + K G+ + +M ++ +M   G RP+  +Y ++I+   + GK + A  + + M  +G 
Sbjct: 369 ISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGC 428

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            PN   ++ +++   K+G  + A+ ++ +M+  G       YS L++     G+V  AM 
Sbjct: 429 LPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMM 488

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           +++ M + G++P    Y++++  L     +D A K+  EM
Sbjct: 489 VWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEM 528



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 138/300 (46%), Gaps = 1/300 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++  L K ++++ +     ++    C      YNVL+     KG   +  ++ ++M
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNM 283

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  TY  +I  L   G+LD A+ L + M      P+   + +L++ + K  R 
Sbjct: 284 FLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRA 343

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
               ++ + M+  G+R +  +Y  LI    K GK + A+ LW +M   G RPN  +++ +
Sbjct: 344 MDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAV 403

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   + GK + A  I   M  +G LP   TYS L++    +G  + A++++  M   G 
Sbjct: 404 IDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGC 463

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
                 Y+ L+  L     V  A  +  +M T+G   D V+ S ++      GS+D AL+
Sbjct: 464 SRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALK 523


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 194/430 (45%), Gaps = 15/430 (3%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           C  ++  +    R  D  L LFD+M      +  + F ++  ++     A+ L+ S    
Sbjct: 145 CQQIIVVLCRSGRQADA-LQLFDQMTTHYGYSPDARFLSF--LVSSCTCANLLDASATLL 201

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES-MEKGECSLDGSTYELMIPSLAK 317
            K  +  C+++  +YN LM+  + +G  +    ++E  ++    S D  ++ ++I  + +
Sbjct: 202 SKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCR 261

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG-HRPSAP 376
            G++  A++L + M E    P       +VD + +   +    +V   +Q  G   P+  
Sbjct: 262 VGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVV 321

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            + S+I  Y KAGKL+ A+ ++++M  +G  PN   + ++I  + K G L  A+ ++  M
Sbjct: 322 TFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM 381

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            R    P   T+S L++ +   GQ+D A+++++ M    ++P + T++ ++  L K+   
Sbjct: 382 TRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRS 441

Query: 497 DVAAKILLEMKTMGYSVDVSA-----SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
           D A ++L E+       D++      + V+ V  K G VD A    + M   G R + + 
Sbjct: 442 DEAIRLLNELN---LRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYT 498

Query: 552 VRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
              L    CMK+ + E A       VE+    D +     ++ L++        H+M + 
Sbjct: 499 YTILIIGYCMKSRISE-AIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMRLA 557

Query: 611 SATKHKAHAF 620
           S        F
Sbjct: 558 SGGASSIQEF 567


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 150/322 (46%), Gaps = 11/322 (3%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA---- 248
           Y P    Y  + D L +S+  D  L L + M  D  +        YN +I  L  +    
Sbjct: 182 YEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAV---TYNSLISGLCNSGRWD 238

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
           D   M  C  K+ +  D      ++N L+   + +G   +A E+YE M +     D  TY
Sbjct: 239 DATRMVSCMTKREIYPD----VFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTY 294

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            L+I  L    RLD A ++F  M  +   P    ++ L++   K+ +++  MK++ EM  
Sbjct: 295 SLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQ 354

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G   +   Y  LI+ Y +AGKL+ A  ++  M   G  PN   + +++     +GK++ 
Sbjct: 355 RGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEK 414

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+ I  DM+++G      TY+ ++     +G+V  A  LY S+   GL P + TYTA++ 
Sbjct: 415 ALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMML 474

Query: 489 LLAKRKLVDVAAKILLEMKTMG 510
            L K+ L   A  +  +MK  G
Sbjct: 475 GLYKKGLRGEADALFRKMKEDG 496



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 154/337 (45%), Gaps = 4/337 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L +FD MV    +  + +   YN +I  L K+ +++ +     ++     + D  +YN L
Sbjct: 171 LYMFDRMVEMGYEPNVVI---YNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSL 227

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           ++   N G    A  +   M K E   D  T+  +I +  K GR+  A +L++EM  R+ 
Sbjct: 228 ISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSL 287

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    ++ L+  +    RLD + +++  M   G  P    Y  LI  Y K+ K++  ++
Sbjct: 288 DPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMK 347

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+ EM   G   N   +T++I+ + ++GKL++A  IF  M   G  P   TY+ LL    
Sbjct: 348 LFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLC 407

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            +G+++ A+ +   M  +G+   + TY  ++  + K   V  A  +   +   G + D+ 
Sbjct: 408 DNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIW 467

Query: 517 ASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIV 552
               +M+ + K G    A    R M   GI  N   V
Sbjct: 468 TYTAMMLGLYKKGLRGEADALFRKMKEDGILPNECYV 504



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 161/364 (44%), Gaps = 5/364 (1%)

Query: 161 VPKMVHITQALKVIND-SDTSLSLFRWAKRQSWYVPGDECYV-MLFDVLNESRDFDGMLS 218
           +P +   ++ L  I+      + ++ W + Q   +P + C   +L +           LS
Sbjct: 78  LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALS 137

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
              +M+    +  I  F +   ++    + D++  +   F ++++   + +   YN ++ 
Sbjct: 138 FLGKMMKLGHEPDIVTFGS---LLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIID 194

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
                     A ++   ME      D  TY  +I  L  SGR D A ++   M +R   P
Sbjct: 195 GLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYP 254

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               F +L+D+  K GR+  + ++Y EM      P    Y  LI       +LD A +++
Sbjct: 255 DVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMF 314

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M   G  P+   ++++I  + KS K++  M +F +M + G +    TY+ L++ +  +
Sbjct: 315 GFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRA 374

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G+++ A +++  M   G+ P + TY  LL  L     ++ A  IL +M+  G   D+   
Sbjct: 375 GKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTY 434

Query: 519 DVLM 522
           ++++
Sbjct: 435 NIII 438



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 136/315 (43%), Gaps = 3/315 (0%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            T  +++    +  +L  A+    +M +    P    F SL++   +  R+  ++ ++  
Sbjct: 117 CTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDR 176

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G+ P+  +Y ++I+   K+ ++D AL L + M + G RP+   +  +I     SG+
Sbjct: 177 MVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGR 236

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
            D A  + + M +    P   T++ L++     G++  A +LY  M    L P + TY+ 
Sbjct: 237 WDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSL 296

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG 544
           L+  L     +D A ++   M + G   DV    +L+  Y K   V+H ++    M   G
Sbjct: 297 LIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
           +  N      L +   +      A+ + +  V      +++ Y  +L  L  C + + E+
Sbjct: 357 VVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGL--CDNGKIEK 414

Query: 605 HLMAILSATKHKAHA 619
            L+ +    K    A
Sbjct: 415 ALVILADMQKSGMDA 429



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 1/242 (0%)

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           +LD S+ ++  M  C   PS   +  L+ + +K  K D  + LW++M++ G   N     
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           +++    +  +L +A+S    M + G  P   T+  LL       ++  A+ +++ M   
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEM 180

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHA 533
           G  P +  Y  ++  L K K VD A  +L  M+  G   D V+ + ++      G  D A
Sbjct: 181 GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDA 240

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
            R +  M    I  + F    L ++C+K      A+ L E  +  +   D+V Y+ ++  
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYG 300

Query: 594 LV 595
           L 
Sbjct: 301 LC 302



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 132/328 (40%), Gaps = 36/328 (10%)

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
           GS Y  M+ +  +  +LD ++ LF  M +    PS   F+ L+ ++ K  + D  + ++ 
Sbjct: 46  GSDYREMLRNGIRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWE 105

Query: 365 EMQ---------------GC--------------------GHRPSAPMYVSLIESYAKAG 389
           +MQ                C                    GH P    + SL+  + +  
Sbjct: 106 QMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGD 165

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           ++  AL ++D M   G+ PN  ++  II+   KS ++D A+ +   ME  G  P   TY+
Sbjct: 166 RIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYN 225

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            L+    +SG+ D A ++ + MT   + P + T+ AL+    K   +  A ++  EM   
Sbjct: 226 SLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRR 285

Query: 510 GYSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
               D+    +L+  +   S +D A +   FM S G   +      L     K+   E  
Sbjct: 286 SLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHG 345

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L     +     + V YT ++    R
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTVLIQGYCR 373


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 154/337 (45%), Gaps = 2/337 (0%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L + R  + +    P    Y  +     +    D  + +FDEM+        ++   YN
Sbjct: 204 ALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM--YN 261

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I       KL+ +     ++++    +   +YN+L+      G   +A+E+ E M   
Sbjct: 262 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 321

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             +LD  TY ++I    K G +  A+++F+ M  R  R +   + SL+ ++ K G++  +
Sbjct: 322 GLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQET 381

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            K++ E    G RP   +Y +LI S++ +G +D A  +  EM      P+   +  ++  
Sbjct: 382 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRG 441

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
               G++D A  +  +M + G  P   TY+ L+  ++  G V  A+++ N M + G  P 
Sbjct: 442 LCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPT 501

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           L TY AL+  L K    D A  ++ EM   G + D S
Sbjct: 502 LLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 538



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 152/326 (46%), Gaps = 7/326 (2%)

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           T ++N+++    + G P +A E+   M +     +  TY  +I      GR+ AA+ + +
Sbjct: 154 TTTFNIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMR 209

Query: 330 EMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAK 387
           EM+ER    P+   + +++    K GR+D ++KV+ EM   G  +P A MY +LI  Y  
Sbjct: 210 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 269

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            GKLDTAL   D M   G       + +++ +    G+   A  +  +M   G      T
Sbjct: 270 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFT 329

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+  H   G V  A++++ +M+  G+R  + TYT+L+  L+K+  V    K+  E  
Sbjct: 330 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAV 389

Query: 508 TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G   D+   + L+  +   G++D A   +  M    I  ++     L          +
Sbjct: 390 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 449

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLA 592
            A+ L++   +   + DLV Y ++++
Sbjct: 450 EARKLIDEMTKRGIQPDLVTYNTLIS 475



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 5/276 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
            D  L   D MV    + G+++  + YN ++  L    +   +Y   +++      +D  
Sbjct: 273 LDTALLYRDRMV----ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVF 328

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN+L+     +G   KA EI+E+M +        TY  +I +L+K G++    KLF E 
Sbjct: 329 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEA 388

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             R  RP   ++ +L++S   +G +D + ++  EM+     P    Y +L+      G++
Sbjct: 389 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 448

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D A +L DEM   G +P+   +  +I  ++  G +  A+ I  +M   GF PT  TY+ L
Sbjct: 449 DEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 508

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           ++    +GQ D A  +   M   G+ P  STY +L+
Sbjct: 509 IQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 544


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 100/439 (22%), Positives = 186/439 (42%), Gaps = 39/439 (8%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y +L     + RD + ++ L  EM     +  +    +Y   I+ L +A +LE 
Sbjct: 203 VPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVY---SYTICIRVLGQAGRLEE 259

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y   +K+ +  CK D  +  VL+ +  + G    A +++  M+  +   D  TY  ++ 
Sbjct: 260 AYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLD 319

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
               SG   +  +++  +K   +  +   + + VD++ + GR+D ++ V+ EM+  G  P
Sbjct: 320 KCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIP 379

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH------------- 420
               Y SLI  + KA + + AL L++ M I G  PN     + I  H             
Sbjct: 380 QQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRY 439

Query: 421 ----------------------AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
                                 AK+G+L +A  +F +++  G  P   TY+ +++  + +
Sbjct: 440 ELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKA 499

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSA 517
              D AMK++  M      P +    +L+ +L K    + A KI  E+K M     D + 
Sbjct: 500 SNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTY 559

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           + +L    ++G V   ++ L  M S+    N      + +   KN     A  +L +   
Sbjct: 560 NTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTM 619

Query: 578 SAAKVDLVLYTSVLAHLVR 596
           +    DL  Y +V+  LV+
Sbjct: 620 NGCMPDLSSYNTVMYGLVK 638



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 156/317 (49%), Gaps = 1/317 (0%)

Query: 241  VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
            +I++  K  +   ++   KK  +    + T SYN L+   +++ L   A E++  M++  
Sbjct: 737  IIRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLG 796

Query: 301  CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
            C  D  TY L++ ++ KS R++  +K+ +EM  + ++ ++  + +++  + K+  LD ++
Sbjct: 797  CDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAI 856

Query: 361  KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             +Y ++   G  P+   Y  L++   K G ++ A  L+DEM   G  PN  ++ +++  +
Sbjct: 857  NLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGY 916

Query: 421  AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
              +G  +    +F  M   G  P   +Y+ +++   + G+++  +  +  +T  GL P L
Sbjct: 917  RIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDL 976

Query: 481  STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRF 539
             TY  L+  L K   ++ A  +  +M+  G + ++   + L++Y+ K G    A +    
Sbjct: 977  ITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEE 1036

Query: 540  MGSSGIRTNNFIVRQLF 556
            + + G + N F    L 
Sbjct: 1037 LLAKGWKPNVFTYNALI 1053



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 178/400 (44%), Gaps = 6/400 (1%)

Query: 186 WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245
           W  + S   P    Y+ L D   +S D   +  +++ +  D   + +  ++A    +  L
Sbjct: 300 WKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTA---AVDAL 356

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
            +  +++ +   F ++          SYN L++ FL      +A E++  M     + +G
Sbjct: 357 CQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNG 416

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            T+ L I    KSG    A+K ++ MK +   P      +++  + K GRL  + +V+ E
Sbjct: 417 YTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHE 476

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           ++  G  P    Y  +I+  +KA   D A++++ EM      P+      +I+   K+G+
Sbjct: 477 LKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGR 536

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
            + A  IF +++     PT  TY+ LL      G+V   M+L   M S    P + TY  
Sbjct: 537 GNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNT 596

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSG 544
           +L  L K   V+ A  +L  M   G   D+S+ + +M   +K+G +D A  W+       
Sbjct: 597 VLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAF-WMFCQMKKV 655

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYV-ESAAKVD 583
           +  +   V  +  S +++ L + A   +  Y+ +  +KVD
Sbjct: 656 LAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVD 695



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 4/309 (1%)

Query: 178  DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
            D +  LF   KR     P +  Y ++ D + +S   + ML + +EM +   K   S +  
Sbjct: 783  DIAEELFSEMKRLGC-DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYK---STYVT 838

Query: 238  YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            YN +I  L K+  L+ +   + +++         +Y  L+   L  G    A  +++ M 
Sbjct: 839  YNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEML 898

Query: 298  KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            +  C  + + Y +++     +G  +   +LF+ M E+   P    +  ++D++   GRL+
Sbjct: 899  ECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLN 958

Query: 358  TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              +  + ++   G  P    Y  LI    K+G+L+ AL L+++M   G  PN   +  +I
Sbjct: 959  DGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLI 1018

Query: 418  ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                K+GK   A  ++ ++   G+ P   TY+ L+  ++ SG  ++A   Y  M   G R
Sbjct: 1019 LYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCR 1078

Query: 478  PGLSTYTAL 486
            P  STY  L
Sbjct: 1079 PNSSTYMQL 1087



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/484 (19%), Positives = 197/484 (40%), Gaps = 40/484 (8%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           P  E ++ +      +VH+ ++     D + +L LF    RQ   V   E    + +++ 
Sbjct: 54  PPCEERVSRPGDAGNVVHMLRSAAAA-DPEEALELFLSVARQPRVVHTTESCNYMLELMR 112

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
                  +  +FD M     K  +  F     V   +     L  +      + ++   +
Sbjct: 113 AHGRVGDVAQVFDLMQRQIIKANVGTFCT---VFGAVGVEGGLRSAPVALPVMKEAGIVL 169

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEK------------------------------ 298
           +  +YN L+   +  G   +A ++Y++M                                
Sbjct: 170 NAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLL 229

Query: 299 GECSLDGS-----TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           GE    G      +Y + I  L ++GRL+ A ++ ++M+E   +P       L+  +  A
Sbjct: 230 GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDA 289

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           GRL  +  V+ +M+    +P    Y++L++    +G   +   +W+ ++  G+  N   +
Sbjct: 290 GRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSY 349

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
           T  +++  + G++D A+ +F +M++ G +P   +Y+ L+     + + + A++L+N M  
Sbjct: 350 TAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNI 409

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD-VLMVYIKDGSVDH 532
            G  P   T+   +    K      A K    MK+ G   DV A + VL    K G +  
Sbjct: 410 HGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGM 469

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A R    + + GI  +N     + + C K +  + A  +    +E+    D++   S++ 
Sbjct: 470 AKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLID 529

Query: 593 HLVR 596
            L +
Sbjct: 530 MLYK 533



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 160/358 (44%), Gaps = 3/358 (0%)

Query: 236  SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
            S+ + +++ + K D  E S    + +  S   +D    + ++  F        A E+ + 
Sbjct: 697  SSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEALAAHELVKK 756

Query: 296  MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
             E    SL   +Y  +I  L     +D A +LF EMK     P    +  ++D+MGK+ R
Sbjct: 757  FENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMR 816

Query: 356  LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            ++  +K+  EM   G++ +   Y ++I    K+  LD A+ L+ ++   GF P    +  
Sbjct: 817  IEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGP 876

Query: 416  IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
            +++   K G ++ A ++F +M   G  P  + Y+ LL  +  +G  +   +L+ SM   G
Sbjct: 877  LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 936

Query: 476  LRPGLSTYTALL-TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
            + P + +YT ++ TL A  +L D       ++  MG   D+   ++L+  + K G ++ A
Sbjct: 937  MNPDIKSYTVVIDTLCADGRLND-GLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEA 995

Query: 534  LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            L     M   GI  N +    L     K      A  + E  +    K ++  Y +++
Sbjct: 996  LSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALI 1053



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 141/335 (42%), Gaps = 1/335 (0%)

Query: 261  VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
            +L  D K+D  S + LM   L +    K+ E  E++      LD      +I    K   
Sbjct: 687  ILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKE 746

Query: 321  LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
              AA +L ++ +          + +L+  +     +D + +++ EM+  G  P    Y  
Sbjct: 747  ALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHL 806

Query: 381  LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
            ++++  K+ +++  L++ +EM   G++  +  +  II    KS  LD A++++  +   G
Sbjct: 807  ILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEG 866

Query: 441  FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
            F PTP TY  LL+     G ++ A  L++ M   G  P  + Y  LL         +   
Sbjct: 867  FSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVC 926

Query: 501  KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            ++   M   G + D+ +  V++     DG ++  L + + +   G+  +      L    
Sbjct: 927  ELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGL 986

Query: 560  MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             K+   E A  L     +     +L  Y S++ +L
Sbjct: 987  GKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYL 1021


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 136/277 (49%), Gaps = 3/277 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + L +EMV  +    +     YN ++  L K  K++ +      +L +  K D  +Y+ L
Sbjct: 254 IGLLNEMVLKTINPNVY---TYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL 310

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +       KA  ++ +M     + D  TY ++I    K+  +D A+ LF+EM ++N 
Sbjct: 311 MDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    ++SL+D + K+GR+     +  EM   G   +   Y SLI+   K G LD A+ 
Sbjct: 371 VPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIA 430

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+++M+  G RPN   FT++++   K G+L  A  +F D+   G+     TY+ +++ H 
Sbjct: 431 LFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHC 490

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             G ++ A+ + + M   G  P   T+  ++  L K+
Sbjct: 491 KQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKK 527



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 163/368 (44%), Gaps = 6/368 (1%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I       ++   +    K+L      DT + N L+     KG   KA   ++ +  
Sbjct: 98  NILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLA 157

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
               L+  +Y  +I  + K G   AAIKL Q++  R  +P+  ++++++D++ K   +  
Sbjct: 158 QGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSE 217

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  ++ EM   G       Y +LI  +   GKL  A+ L +EM +    PN   + ++++
Sbjct: 218 AYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVD 277

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +  K GK+  A S+   M +A   P   TYS L++ +    +V  A  ++N+M+  G+ P
Sbjct: 278 ALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTP 337

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEM--KTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
            + TYT L+    K K+VD A  +  EM  K M   + V+ S ++    K G + +    
Sbjct: 338 DVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGI-VTYSSLIDGLCKSGRIPYVWDL 396

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV- 595
           +  M   G   N      L +   KN   + A  L     +   + +   +T +L  L  
Sbjct: 397 IDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCK 456

Query: 596 --RCQDEQ 601
             R +D Q
Sbjct: 457 GGRLKDAQ 464



 Score =  106 bits (264), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 139/308 (45%), Gaps = 1/308 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  L K   +  +Y  F ++       D  +Y+ L+  F  +G   +A  +   M 
Sbjct: 202 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMV 261

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + +  TY +++ +L K G++  A  +   M +   +P    +++L+D       + 
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  V+  M   G  P    Y  LI  + K   +D AL L+ EM      P    ++ +I
Sbjct: 322 KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   KSG++     +  +M   G      TYS L++    +G +D A+ L+N M   G+R
Sbjct: 382 DGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIR 441

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P   T+T LL  L K   +  A ++  ++ T GY ++V   +V++  + K G ++ AL  
Sbjct: 442 PNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTM 501

Query: 537 LRFMGSSG 544
           L  M  +G
Sbjct: 502 LSKMEDNG 509



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 139/325 (42%), Gaps = 5/325 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D L + +       LF EM    +  GIS     Y+ +I       KL+ +    
Sbjct: 202 YSTIIDALCKYQLVSEAYGLFSEM----TVKGISADVVTYSTLIYGFCIEGKLKEAIGLL 257

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            +++      +  +YN+L+     +G   +A  +   M K     D  TY  ++      
Sbjct: 258 NEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLV 317

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
             +  A  +F  M      P  + +  L++   K   +D ++ ++ EM      P    Y
Sbjct: 318 YEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTY 377

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SLI+   K+G++     L DEM   G   N   ++ +I+   K+G LD A+++F  M+ 
Sbjct: 378 SSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKD 437

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P   T++ LL+     G++  A +++  + + G    + TY  ++    K+ L++ 
Sbjct: 438 QGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEE 497

Query: 499 AAKILLEMKTMGYSVDVSASDVLMV 523
           A  +L +M+  G   D    +++++
Sbjct: 498 ALTMLSKMEDNGCIPDAVTFEIIII 522



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 108/240 (45%), Gaps = 2/240 (0%)

Query: 239  NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
            N +I       ++  ++    K+L      DT ++  L+     KG   KA   ++ +  
Sbjct: 965  NILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLA 1024

Query: 299  GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                L+  +Y  +I  + K G   AAIKL +++  R  +P   ++ +++D++ K   +  
Sbjct: 1025 QGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSK 1084

Query: 359  SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
            +  ++ EM   G       Y +LI  +   GKL  A+ L ++M +    PN   + ++++
Sbjct: 1085 AYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVD 1144

Query: 419  SHAKSGK--LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
            +  K GK  LD ++S+ + ME  G      T+  ++       + D   KL + M + GL
Sbjct: 1145 ALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 108/244 (44%), Gaps = 2/244 (0%)

Query: 269  DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
            D  + N+L+  F + G     F I   + K     D  T+  +I  L   G+++ A+   
Sbjct: 960  DLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFH 1019

Query: 329  QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             ++  + F+ +   + +L++ + K G    ++K+  ++ G   +P   MY ++I++  K 
Sbjct: 1020 DKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKH 1079

Query: 389  GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
              +  A  L+ EM + G   +   +  +I      GKL  A+ +   M      P   TY
Sbjct: 1080 QLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTY 1139

Query: 449  SCLLEMHASSGQ--VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            + L++     G+  +D ++ + + M   G +    T+  +++ L ++   D   K+L EM
Sbjct: 1140 NILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEM 1199

Query: 507  KTMG 510
               G
Sbjct: 1200 IARG 1203



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/272 (19%), Positives = 110/272 (40%), Gaps = 36/272 (13%)

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D ++  +  M    H P    +  +++S+AK     TA+ L   + + G +P+     +
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I      G++    S+   + + G+ P   T + L++     GQV  A+  ++ + + G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 476 L-----------------------------------RPGLSTYTALLTLLAKRKLVDVAA 500
                                               +P +  Y+ ++  L K +LV  A 
Sbjct: 160 FQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAY 219

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +  EM   G S D V+ S ++  +  +G +  A+  L  M    I  N +    L ++ 
Sbjct: 220 GLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            K    + AK +L   +++  K D++ Y++++
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLM 311



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 99/218 (45%), Gaps = 2/218 (0%)

Query: 307  TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
            T  ++I      G++     +  ++ +R + P    F +L++ +   G+++ ++  + ++
Sbjct: 963  TLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKL 1022

Query: 367  QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
               G + +   Y +LI    K G    A++L  ++     +P+  ++  II++  K   +
Sbjct: 1023 LAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLV 1082

Query: 427  DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
              A  +F +M   G      TY+ L+      G++  A+ L N M    + P + TY  L
Sbjct: 1083 SKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNIL 1142

Query: 487  LTLLAK--RKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            +  L K  + L+D +  +L +M+  G   +    ++++
Sbjct: 1143 VDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIII 1180



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 24/201 (11%)

Query: 230  NGISLFSAYNRVIQYLAK--ADKLEMSYCCFKKVLDSDCKI-DTQS-------------- 272
            NG+ L    N+ + +  K  A   +++   +  +++  CKI DT++              
Sbjct: 1004 NGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTK 1063

Query: 273  -----YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
                 YN ++       L  KA+ ++  M     S D  TY  +I      G+L  AI L
Sbjct: 1064 PDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGL 1123

Query: 328  FQEMKERNFRPSFNIFASLVDSMGKAGR--LDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
              +M  +   P+   +  LVD++ K G+  LD S+ +  +M+  G + +A  +  +I + 
Sbjct: 1124 LNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISAL 1183

Query: 386  AKAGKLDTALRLWDEMRIAGF 406
             +  + D   +L  EM   G 
Sbjct: 1184 FEKDENDKVEKLLHEMIARGL 1204


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 123/553 (22%), Positives = 235/553 (42%), Gaps = 56/553 (10%)

Query: 269  DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
            D +++N LM+ +   G   +A  I+ +M +   S    +  +++ +L   GRL+    + 
Sbjct: 786  DLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVV 845

Query: 329  QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +E+++  F+ S +    ++D+  +AG +    K+Y  M+  G+ P+  +Y  +IE   K 
Sbjct: 846  EELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKG 905

Query: 389  GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
             ++  A  +  EM  A F+    ++  +++ +         + ++  ++  G  P  +TY
Sbjct: 906  KRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTY 965

Query: 449  SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
            + L+ M+    + +    L   M + GL P L TY +L++   K+K ++ A ++  E+ +
Sbjct: 966  NTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLS 1025

Query: 509  MGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
             G  +D S    +M   +D GS   A + L+ M ++GI      +  L  S   +   + 
Sbjct: 1026 KGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQE 1085

Query: 568  AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD----------------EQNER------- 604
            A+ +L    ++  ++  + Y+SV+   +R +D                E + R       
Sbjct: 1086 AEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVR 1145

Query: 605  ---------HLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
                      +M +L A +         L  G   R + ++S V  +F  +   +E+ AA
Sbjct: 1146 AASFSKEKIEVMLLLKALEDIGFDLPIRLLAG---RPELLVSEVDGWFEKLK-SIEDNAA 1201

Query: 656  RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
              FVN LLN L        A  V+++  +  +F   +       W  D R LS GAAL A
Sbjct: 1202 LNFVNALLNLLWAFELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALDA 1261

Query: 716  VMHTLHRFRKRMLYYGVVPRRIKLVTGP------TLKIVIAQMLSSVESPFEVSKV---V 766
             +            Y   P+ + L+TG       +L   +   L  + SPF   K    +
Sbjct: 1262 SLEG----------YPESPKSVVLITGTAEYNGISLDKTLKACLWEMGSPFLPCKTRTGL 1311

Query: 767  LRAPGDSVMEWFK 779
            L A   S+  W K
Sbjct: 1312 LVAKAHSLRMWLK 1324



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 205/463 (44%), Gaps = 25/463 (5%)

Query: 131 NASAVAKIVEVVNRWKW---GPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRW- 186
           NA  VA I+ V+ RW       E+ T+ +    V   V +  A+  +       S  +  
Sbjct: 190 NARMVAAILGVLGRWNQESLAVEIFTRAEPT--VGDRVQVYNAMMGVYSRSGKFSKAQEL 247

Query: 187 --AKRQSWYVPGDECYVMLFDVLNESRDFDGMLS------LFDEMVHDSSKNGISLFSAY 238
             A RQ   VP     ++ F+ L  +R   G L+      L D MV +S     ++   Y
Sbjct: 248 VDAMRQRGCVPD----LISFNTLINARLKSGGLTPNLAVELLD-MVRNSGLRPDAI--TY 300

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++   ++   L+ +   F+ +    C+ D  +YN +++++   GL  +A  ++  +E 
Sbjct: 301 NTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELEL 360

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY  ++ + A+    +   +++Q+M++  F      + +++   GK G+LD 
Sbjct: 361 KGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDL 420

Query: 359 SMKVYMEMQG-CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           ++++Y +M+G  G  P A  Y  LI+S  KA +   A  L  EM   G +P    ++ +I
Sbjct: 421 ALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALI 480

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             +AK+GK + A   F+ M R+G  P    YS +L++     +   A  LY  M S G  
Sbjct: 481 CGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHT 540

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537
           P  + Y  ++  L K    D   K + +M+ +     +  S VL   +K    D A R L
Sbjct: 541 PSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVL---VKGECFDLAARQL 597

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +   ++G    N  +  +  S   +  +  A  LLE   E A+
Sbjct: 598 KVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHAS 640



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 160/369 (43%), Gaps = 8/369 (2%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L +F W   + W+ P       +  VL          SL  E+   +          YN
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRW----NQESLAVEIFTRAEPTVGDRVQVYN 229

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG--LPYKAFEIYESME 297
            ++   +++ K   +      +    C  D  S+N L+   L  G   P  A E+ + + 
Sbjct: 230 AMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVR 289

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  TY  ++ + ++   LD A+K+F++M+    +P    + +++   G+ G   
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAA 349

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + +++ME++  G  P A  Y SL+ ++A+    +    ++ +M+  GF  +   +  II
Sbjct: 350 EAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTII 409

Query: 418 ESHAKSGKLDIAMSIFTDMER-AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
             + K G+LD+A+ ++ DM+  +G  P   TY+ L++    + +   A  L + M   G+
Sbjct: 410 HMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGI 469

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P L TY+AL+   AK    + A      M   G   D  A  V++ V ++      A  
Sbjct: 470 KPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWG 529

Query: 536 WLRFMGSSG 544
             R M S G
Sbjct: 530 LYRDMISDG 538



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 108/230 (46%), Gaps = 1/230 (0%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN-IFASL 346
           +A +++  +    C    S  + M+    K G  + A ++  + + + F  + + ++  +
Sbjct: 699 EASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDI 758

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +++ GK      +  V   ++  G  P    + SL+ +YA+ G  + A  +++ M   G 
Sbjct: 759 IEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGP 818

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P      +++ +    G+L+    +  +++  GF  + S+   +L+  A +G +    K
Sbjct: 819 SPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKK 878

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           +Y+SM +AG  P +  Y  ++ LL K K V  A  ++ EM+   + V+++
Sbjct: 879 IYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELA 928



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 106/531 (19%), Positives = 199/531 (37%), Gaps = 116/531 (21%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L L++  K  S   P    Y +L D L ++       +L  EM+    K  +  +SA
Sbjct: 419 DLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSA 478

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES-- 295
              +I   AKA K E +   F  +L S  K D  +Y+V++ + L      KA+ +Y    
Sbjct: 479 ---LICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMI 535

Query: 296 ---------------------------------ME---------------KGEC------ 301
                                            ME               KGEC      
Sbjct: 536 SDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAAR 595

Query: 302 ----------SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
                      L+  T   ++ S + SGR   A +L + +KE        I  +L+    
Sbjct: 596 QLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHC 655

Query: 352 KAGRLDTSM-------------------------------------KVYMEMQGCGHRPS 374
           K   L  ++                                     +V+ +++  G   S
Sbjct: 656 KVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEAS 715

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG---LFTMIIESHAKSGKLDIAMS 431
             +  S++  Y K G  +TA ++ ++    GF  +F    ++T IIE++ K      A S
Sbjct: 716 ESVCKSMVVVYCKLGFPETAHQVVNQAETKGF--HFACSPMYTDIIEAYGKQKLWQKAES 773

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +  ++ ++G  P   T++ L+  +A  G  + A  ++N+M   G  P + +   LL  L 
Sbjct: 774 VVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALC 833

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMV---YIKDGSVDHALRWLRFMGSSGIRTN 548
               ++    ++ E++ MG+   +S S +L++   + + G++    +    M ++G    
Sbjct: 834 VDGRLEELYVVVEELQDMGFK--ISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPT 891

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
             + R + E   K      A+ ++    E+  KV+L ++ S+L      +D
Sbjct: 892 IRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIED 942



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 92/211 (43%), Gaps = 5/211 (2%)

Query: 236  SAYNRVIQYLAKADKLEMSYCCFKKV--LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
            + YN +I    +  + E  Y   +++  L  D K+DT  Y  L++ F  +    +A +++
Sbjct: 963  TTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDT--YKSLISAFGKQKCLEQAEQLF 1020

Query: 294  ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            E +      LD S Y  M+     SG    A KL Q MK     P+      L+ S   +
Sbjct: 1021 EELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSS 1080

Query: 354  GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
            G    + KV   ++      +   Y S+I++Y ++   ++ +    EM+  G  P+  ++
Sbjct: 1081 GNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIW 1140

Query: 414  TMIIESHAKSGKLDIAMSIFTDMERAGF-LP 443
            T  + + + S +    M +   +E  GF LP
Sbjct: 1141 TCFVRAASFSKEKIEVMLLLKALEDIGFDLP 1171


>gi|27545040|gb|AAO18446.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|108711829|gb|ABF99624.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 863

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 133/579 (22%), Positives = 236/579 (40%), Gaps = 26/579 (4%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD +L LF EM HD S +     + YN ++   A     + S    + +L++    DT S
Sbjct: 224 FDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTAS 283

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y  ++  F   G   +  E++  M     + D S Y  ++ +    G    A+ + ++M+
Sbjct: 284 YRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQ 343

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P+   +  L+D  G+ GR D   +++ EM+     P    Y  L   +   G   
Sbjct: 344 ADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMR-TTVPPDTATYNVLFRVFGDGGFFK 402

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             + L+ +M  +   P+      ++ +  + G  + A  +   +   G +PT   Y+ L+
Sbjct: 403 EVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLV 462

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGY 511
           E    +   + A   +N MT  G  P + TY AL    AK  L   A  I   M      
Sbjct: 463 EALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAI 522

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
             D  + D L+  Y +   +D A++    M  S    +   +  +  + C+   + ES +
Sbjct: 523 QKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 582

Query: 570 PLLETYVESAAKV-DLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA-HAFLCGLFTG 627
              E  ++S   V  ++ Y  +L+   R     +   L+  +   +  + H  +  +  G
Sbjct: 583 QFEE--LQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKG 640

Query: 628 P--EQRKQPVLSFV--REFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAY 683
              +     ++ +V       G DY L       F N LL+ L   GQ  RA  V   A 
Sbjct: 641 EYDDDSNWQMVEYVLDNSNLEGCDYSLR------FFNALLDVLWWFGQKGRAARVLDQAL 694

Query: 684 ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGP 743
           +  LFP+ +  D  + WS DV  +SVG +L+AV   L++   R+     +P+   +V   
Sbjct: 695 KYGLFPE-LFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDEDLPQLASVV--- 750

Query: 744 TLKIVIAQM-LSSVESPFEVSKVVLRAPGDSVMEWFKKP 781
              ++  QM  S+V     ++KVV     D++   F  P
Sbjct: 751 ---VLRGQMEKSTVTRGLPIAKVVYSFLNDTLSSSFHYP 786



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 134/318 (42%), Gaps = 13/318 (4%)

Query: 266 CKIDTQSYNVLMTLFLNKG--LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323
           C+ D   + +++ +   +G  L  K  E++  +     S    +Y  +I + A++   + 
Sbjct: 130 CRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPSE--SRTALSYTSLIAAYARNALHEE 187

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGR----LDTSMKVYMEMQ---GCGHRPSAP 376
           A +L  +MK     P+   + +++ +  +A       D  + ++ EM+       RP   
Sbjct: 188 ARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLT 247

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +L+ + A     D +  L   M  AG  P+   +  I+++ A +G L     +F +M
Sbjct: 248 TYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEM 307

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P PS Y  L+E H   G    A+ +   M + G  P  +TY  LL L  ++   
Sbjct: 308 SATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRF 367

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRTNNFIVRQL 555
           D   ++  EM+T     D +  +VL     DG      +   + M  S +  +      +
Sbjct: 368 DGVRELFREMRTT-VPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENV 426

Query: 556 FESCMKNALYESAKPLLE 573
             +C +  L+E A+ +L+
Sbjct: 427 MVACGRGGLHEDAREVLD 444


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN ++ L    G   +A  +   M     + DG  Y  +I    K G + +A +LF EM
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 284

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           ++R   P F  + +++  + + GR+  + K++ EM      P    Y +LI+ Y K GK+
Sbjct: 285 QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKM 344

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A  L ++M   G  PN   +T + +   K G++D A  +  +M R G      TY+ L
Sbjct: 345 KEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 404

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +     +G +D A+KL   M  AG  P   TYT L+    K + +  A ++L +M     
Sbjct: 405 VNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDREL 464

Query: 512 SVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNAL 564
              V   +VLM  +   G ++   + L++M   GI  N      L +  C++N +
Sbjct: 465 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNM 519



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN VI  L K  K+  +    ++++      D   Y  L+  F   G    A+ +++ M
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 284

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +K + S D  TY  +I  L ++GR+  A KLF EM  +   P    + +L+D   K G++
Sbjct: 285 QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKM 344

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++ +M   G  P+   Y +L +   K G++DTA  L  EM   G   N   +  +
Sbjct: 345 KEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 404

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K+G +D A+ +  DME AGF P   TY+ L++ +  S ++  A +L   M    L
Sbjct: 405 VNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDREL 464

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           +P + T+  L+       +++   K+L  M   G   + +  + L+
Sbjct: 465 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 510



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 5/329 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEM 253
           P    Y  L D   +  +      LFDEM     K  IS  F  Y  VI  L +  ++  
Sbjct: 256 PDGVIYTTLIDGFCKLGNVSSAYRLFDEM----QKRKISPDFITYTAVICGLCQTGRVME 311

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F +++    + D  +Y  L+  +  +G   +AF ++  M +   + +  TY  +  
Sbjct: 312 ADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALAD 371

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K G +D A +L  EM  +    +   + SLV+ + KAG +D ++K+  +M+  G  P
Sbjct: 372 GLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHP 431

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
            A  Y +L+++Y K+ ++  A  L  +M     +P    F +++     SG L+    + 
Sbjct: 432 DAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLL 491

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G +P  +TY+ L++ +     + +  ++Y  M + G+ P  +TY  L+    K 
Sbjct: 492 KWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKA 551

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           + +  A  +  +M   G+++ VS+ + L+
Sbjct: 552 RNMKEAWFLHRDMVGKGFNLTVSSYNALI 580



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 146/375 (38%), Gaps = 71/375 (18%)

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
            +KL +EM+ +  +P+   +  ++  + K G++  + +V  EM   G  P   +Y +LI+
Sbjct: 207 VLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 266

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            + K G + +A RL+DEM+     P+F  +T +I    ++G++  A  +F +M      P
Sbjct: 267 GFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP 326

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              TY+ L++ +   G++  A  L+N M   GL P + TYTAL   L K           
Sbjct: 327 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKC---------- 376

Query: 504 LEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
                                   G VD A   L  M   G+  N +    L     K  
Sbjct: 377 ------------------------GEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAG 412

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCG 623
             + A  L++    +    D V YT+++     C+  +  R            AH  L  
Sbjct: 413 NIDQAVKLMKDMEVAGFHPDAVTYTTLMD--AYCKSREMVR------------AHELL-- 456

Query: 624 LFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAY 683
                           R+    +D EL+     +  NVL+N   + G +     + K   
Sbjct: 457 ----------------RQM---LDRELQPTVVTF--NVLMNGFCMSGMLEDGEKLLKWML 495

Query: 684 ENKLFPKAIVFDQHI 698
           E  + P A  ++  I
Sbjct: 496 EKGIMPNATTYNSLI 510



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 116/294 (39%), Gaps = 5/294 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKA 248
           Q    P    Y  L D L +  + D      +E++H+  + G+ L    YN ++  L KA
Sbjct: 356 QMGLTPNIVTYTALADGLCKCGEVDTA----NELLHEMCRKGLELNIYTYNSLVNGLCKA 411

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             ++ +    K +  +    D  +Y  LM  +       +A E+   M   E      T+
Sbjct: 412 GNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTF 471

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            +++     SG L+   KL + M E+   P+   + SL+        +  + ++Y  M  
Sbjct: 472 NVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCA 531

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P    Y  LI+ + KA  +  A  L  +M   GF      +  +I+   K  K   
Sbjct: 532 KGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLE 591

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           A  +F  M R G +     Y+   +++   G+++  ++L +      L   + T
Sbjct: 592 ARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQT 645



 Score = 42.0 bits (97), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 14/238 (5%)

Query: 163 KMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDE 222
           K  +I QA+K++ D + +            + P    Y  L D   +SR+      L  +
Sbjct: 410 KAGNIDQAVKLMKDMEVA-----------GFHPDAVTYTTLMDAYCKSREMVRAHELLRQ 458

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           M+    +  +  F   N ++     +  LE      K +L+     +  +YN L+  +  
Sbjct: 459 MLDRELQPTVVTF---NVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCI 515

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           +       EIY  M       DG+TY ++I    K+  +  A  L ++M  + F  + + 
Sbjct: 516 RNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSS 575

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
           + +L+    K  +   + +++ +M+  G      +Y    +     GK++  L L DE
Sbjct: 576 YNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDE 633


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 203/468 (43%), Gaps = 22/468 (4%)

Query: 159 QFVPKMVHITQALKVINDSDTS----LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF- 213
           QF P +V     ++V++   TS    L LFRWA+ Q  +   +  +  + ++L ++    
Sbjct: 379 QFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMR 438

Query: 214 -----------DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
                        M  + D ++     + +S+    + +I   +K   +E     F K++
Sbjct: 439 SAYWVMERVINANMHRIVDVLIGGCVSSEVSV-KILDLLIWVYSKKSMVEQCLSVFDKMI 497

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLAKSGR 320
            S    D ++ N ++ +  +K L  KA E+Y +M  GE  +  +  TY  ++ S  K G+
Sbjct: 498 KSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTM--GEFGIKPTIVTYNTLLDSYCKGGK 555

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +   + L  EM+ R   P+   +  L++ + K G  + +  +  EM   G + SA  Y  
Sbjct: 556 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 615

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI  Y   G L  AL L +EM + G  P    +   I    K G++  AM   +DM    
Sbjct: 616 LIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANN 675

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
            LP   +Y+ L+  +   G +  A  L++ + S  L P + TY  LL  L ++  ++VA 
Sbjct: 676 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQ 735

Query: 501 KILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++ +EM   G + D+    +L+    K GS+  A  +   M   G+  +++         
Sbjct: 736 QLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGE 795

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           +K      A  L E  +      DL++Y  V+  L +  + +    L+
Sbjct: 796 LKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELL 843



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 166/391 (42%), Gaps = 12/391 (3%)

Query: 120 VMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKL---QFVPKMVHITQALKVIND 176
           V++GG     ++   +  ++ V ++     +  +  DK+   +  P + +  + L+++ D
Sbjct: 458 VLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRD 517

Query: 177 SD---TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH-DSSKNGI 232
            D    ++ ++R    +    P    Y  L D   +       L L  EM     + N +
Sbjct: 518 KDLMSKAVEVYR-TMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDV 576

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           +    YN +I  L+K  + E +     ++L +  K+   +YN L+  + NKGL  +A  +
Sbjct: 577 T----YNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSL 632

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            E M     S   +TY   I  L K GR+  A++   +M   N  P    + +L+    +
Sbjct: 633 QEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR 692

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G L  +  ++ E++     P+   Y +L++   + G+L+ A +L  EM   G  P+   
Sbjct: 693 LGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVT 752

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +T+++    K G L +A   F +M   G       Y+  +      G    A  L   M 
Sbjct: 753 YTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEML 812

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
           + G  P L  Y  ++  L K   ++ A+++L
Sbjct: 813 AKGFPPDLIIYNVVVDGLCKLGNLEEASELL 843


>gi|125606474|gb|EAZ45510.1| hypothetical protein OsJ_30168 [Oryza sativa Japonica Group]
          Length = 651

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 135/268 (50%)

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
           I   +Y +++      G P++   ++E M K  C+ + + Y  +I S+ K GR   A+ L
Sbjct: 374 IPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMAL 433

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F+ MK+   +     +  +V+ + + G+LD ++  +   Q  G   +A  Y SLI+ + K
Sbjct: 434 FERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGK 493

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           AG +D +  L++EM   GF P+   + ++I+  AKSG++D A +++  ME  G   T  T
Sbjct: 494 AGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYT 553

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L++      + + A+K +++M   G+ P  + +  L + L        A +IL E+ 
Sbjct: 554 YTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELA 613

Query: 508 TMGYSVDVSASDVLMVYIKDGSVDHALR 535
            MG   + +  D++ V  K G    A +
Sbjct: 614 PMGVIPETAHEDMINVLCKAGRFKQACK 641



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 137/315 (43%), Gaps = 2/315 (0%)

Query: 188 KRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247
           + Q+   P    Y+ L         F   + LF EM      N I    AY  VI  L K
Sbjct: 330 QEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQH-AYVLVIGALCK 388

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
             K       F+++L   C  +   Y  L+      G   +A  ++E M+     LD  T
Sbjct: 389 DGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVT 448

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y +++  L + G+LD A+  F+  +E+    +   + SL+D  GKAG +D S +++ EM 
Sbjct: 449 YGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMI 508

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G  P +  Y  LI+  AK+G++D A  L+  M   G       +T++I+   K  K +
Sbjct: 509 AKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNE 568

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+  +  M   G  PT + +  L      SG+   A ++ + +   G+ P  + +  ++
Sbjct: 569 EALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIP-ETAHEDMI 627

Query: 488 TLLAKRKLVDVAAKI 502
            +L K      A K+
Sbjct: 628 NVLCKAGRFKQACKL 642



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 132/301 (43%), Gaps = 5/301 (1%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESME-KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           YN L+   +N GL   A  ++++M  + +   D  +Y ++I    ++GR   A+    EM
Sbjct: 270 YNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDAMARLSEM 329

Query: 332 KER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ--GCGHRPSAPMYVSLIESYAKA 388
           +E+    P    + +L+      G     + ++ EM+  G G+      YV +I +  K 
Sbjct: 330 QEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAYVLVIGALCKD 389

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           GK    + +++ M   G   N  ++T +I+S  K G+   AM++F  M+ +G      TY
Sbjct: 390 GKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVTY 449

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             ++      G++D A+  + S    G+      YT+L+    K  +VD + ++  EM  
Sbjct: 450 GVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIA 509

Query: 509 MGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G+  D    +VL+  + K G +D A    + M   G     +    L +   K    E 
Sbjct: 510 KGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEE 569

Query: 568 A 568
           A
Sbjct: 570 A 570



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 126/317 (39%), Gaps = 42/317 (13%)

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +L A ++   +   R+  PS +  ASL+ S+   G  +  +  +  M+  G  PS  +Y 
Sbjct: 214 QLVAELRAHGDTALRHLTPSSS--ASLIRSLAALGLAEELLWAWKAMRLAGVEPSRLIYN 271

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAG-FRPNFGLFTMIIESHAKSGKLDIAMSIFTDM-E 437
            L++    AG LDTA+ ++D M      RP+   + ++I+ + ++G+   AM+  ++M E
Sbjct: 272 CLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDAMARLSEMQE 331

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG---------------------- 475
           +A   P   TY  L++ H S G     + L+  M   G                      
Sbjct: 332 QAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAYVLVIGALCKDGK 391

Query: 476 -----------LRPGLST----YTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASD 519
                      L+ G +     YTAL+  + K      A  +   MK  G  +D V+   
Sbjct: 392 PFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVTYGV 451

Query: 520 VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           ++    + G +D A+   R     GI  N      L +   K  + + +K L E  +   
Sbjct: 452 IVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKG 511

Query: 580 AKVDLVLYTSVLAHLVR 596
              D   Y  ++  L +
Sbjct: 512 FVPDSYCYNVLIDGLAK 528


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 178/398 (44%), Gaps = 4/398 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L D   +  + +  L + DEM+    K  +     YN +I  +AKA ++  +
Sbjct: 344 PNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVV---TYNAMIGGIAKAGEMAKA 400

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F ++L +  + DT +YN+L+  +L      KA E+   M+  + +    TY ++I  
Sbjct: 401 MSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISG 460

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L  S  L  A ++  +M     +P+  ++ +L+ +  +  R + ++++   M   G  P 
Sbjct: 461 LCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPD 520

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  LI    +A K++ A  L  +M   G +PN   +   I  ++KSG++ +A   F 
Sbjct: 521 LFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFK 580

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           DM  +G +P    Y+ L++ H   G    A+  +  M   GL P +  Y+A++  L+K  
Sbjct: 581 DMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNG 640

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
               A  + L+    G   DV   + L+  + K+G ++ A +    M  +GI  N  +  
Sbjct: 641 KTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYN 700

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            L     K      A+ L +   E     D+V Y++++
Sbjct: 701 TLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTII 738



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 199/494 (40%), Gaps = 60/494 (12%)

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           ++ +CK +  +YN  +      G   +A E+ + M +     DG TY L++    K  R 
Sbjct: 268 MEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRS 327

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             A  +F+ M      P+   + +L+D   K G ++ ++++  EM   G + +   Y ++
Sbjct: 328 KEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAM 387

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I   AKAG++  A+ L++EM +AG  P+   + ++I+ + KS  +  A  +  +M+    
Sbjct: 388 IGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447

Query: 442 LPTPSTYSCLLE--MHASSGQ---------------------------------VDSAMK 466
            P+P TYS L+    H+S  Q                                  + A++
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYI 525
           L   M + G+ P L  Y  L+  L + K V+ A  +L++M   G   +       + +Y 
Sbjct: 508 LLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYS 567

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           K G +  A R+ + M SSGI  NN I   L +          A    +  +E     D+ 
Sbjct: 568 KSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIR 627

Query: 586 LYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHG 645
            Y++++             H ++    TK     FL  L TG         S +  F   
Sbjct: 628 AYSAII-------------HSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKE 674

Query: 646 IDYE---------LEEGAARYFV--NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVF 694
            D E         L  G     V  N L+N L  +G++ +AR ++    E  L P  + +
Sbjct: 675 GDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTY 734

Query: 695 DQHIAWSLDVRNLS 708
              I       NL+
Sbjct: 735 STIIDGYCKSGNLT 748



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 165/356 (46%), Gaps = 5/356 (1%)

Query: 190  QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
            ++  VP    Y  L     +  D +    L+DEM+H+     I +   YN +I  L K  
Sbjct: 654  KTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVV---YNTLINGLCKLG 710

Query: 250  KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            ++  +   F ++ + D   D  +Y+ ++  +   G   +AF++++ M     S DG  Y 
Sbjct: 711  EVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYC 770

Query: 310  LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++I    K G L+ A+ LF E ++++   S + F SL+DS  K G++  + +++ +M   
Sbjct: 771  ILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEARELFDDMVDK 829

Query: 370  GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
               P+   Y  LI++Y KA  ++ A +L+ +M      PN   +T ++ S+ + G     
Sbjct: 830  KLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKM 889

Query: 430  MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
            +S+F DME  G       Y  +   +   G+   A+KL N     G++     + AL+  
Sbjct: 890  ISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFH 949

Query: 490  LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSG 544
            L K K +    ++L EM     S+     + L++ + K G+ D A + L  M   G
Sbjct: 950  LCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLG 1005



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 172/373 (46%), Gaps = 10/373 (2%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           S  VP +  Y +L     +  +    LS F  M+    K  I    AY+ +I  L+K  K
Sbjct: 585 SGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLE---KGLIPDIRAYSAIIHSLSKNGK 641

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
            + +   F K L +    D   YN L++ F  +G   KA ++Y+ M     + +   Y  
Sbjct: 642 TKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNT 701

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I  L K G +  A +LF E++E++  P    +++++D   K+G L  + K++ EM   G
Sbjct: 702 LINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKG 761

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P   +Y  LI+   K G L+ AL L+ E +      +   F  +I+S  K GK+  A 
Sbjct: 762 ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEAR 820

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +F DM      P   TY+ L++ +  +  ++ A +L+  M +  + P   TYT+L  LL
Sbjct: 821 ELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSL--LL 878

Query: 491 AKRKLVDVAAKILL--EMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT 547
           +  ++ +    I L  +M+  G + D  A  V+   Y K+G    AL+ L      GI+ 
Sbjct: 879 SYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKL 938

Query: 548 NNFIVRQL-FESC 559
            + +   L F  C
Sbjct: 939 EDDVFDALIFHLC 951



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 156/364 (42%), Gaps = 3/364 (0%)

Query: 230 NGI--SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
           NG+   LF  YN +I  L +A K+E +      + +   K +  +Y   + L+   G   
Sbjct: 515 NGVLPDLF-CYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ 573

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
            A   ++ M       +   Y ++I      G    A+  F+ M E+   P    +++++
Sbjct: 574 VAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAII 633

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
            S+ K G+   +M V+++    G  P   +Y SLI  + K G ++ A +L+DEM   G  
Sbjct: 634 HSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGIN 693

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           PN  ++  +I    K G++  A  +F ++E    +P   TYS +++ +  SG +  A KL
Sbjct: 694 PNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKL 753

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
           ++ M S G+ P    Y  L+    K   ++ A  +  E +        + + ++  + K 
Sbjct: 754 FDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKH 813

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           G V  A      M    +  N      L ++  K  + E A+ L           + + Y
Sbjct: 814 GKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTY 873

Query: 588 TSVL 591
           TS+L
Sbjct: 874 TSLL 877



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 191/462 (41%), Gaps = 14/462 (3%)

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N LM   L   +    +++Y SM + +   D  TY  +I +  K G +     +  EM E
Sbjct: 211 NNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-E 269

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           +  +P+   + + +  + + G +D +++V   M   G  P    Y  L++ + K  +   
Sbjct: 270 KECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKE 329

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  +++ M  +G  PN   +T +I+   K G ++ A+ I  +M   G      TY+ ++ 
Sbjct: 330 AKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIG 389

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
             A +G++  AM L+N M  AGL P   TY  L+    K   +  A ++L EMK    + 
Sbjct: 390 GIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTP 449

Query: 514 DVSASDVLMVYIKDGS-VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
                 VL+  +   S +  A   L  M  +G++ N F+   L ++ ++ + YE A  LL
Sbjct: 450 SPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELL 509

Query: 573 ETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRK 632
           +  + +    DL  Y  ++  L R +  +  + L+  +     K +A   G F     + 
Sbjct: 510 KIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKS 569

Query: 633 QPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAI 692
             +    R F   +   +      Y   +L+     +G    A   +K   E  L P   
Sbjct: 570 GEIQVAERYFKDMLSSGIVPNNVIY--TILIKGHCDVGNTVEALSTFKCMLEKGLIPDI- 626

Query: 693 VFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVP 734
                 A+S  + +LS        M    +F K     GVVP
Sbjct: 627 -----RAYSAIIHSLSKNGKTKEAMGVFLKFLKT----GVVP 659



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 106/489 (21%), Positives = 190/489 (38%), Gaps = 39/489 (7%)

Query: 271 QSYNVLMTLFLNKGLPYKA--------------FEIYESMEKGECSLDGST---YELMIP 313
            SY++L     N GL ++A               EI +S+ +      GS    +++ I 
Sbjct: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
                G L+ A  +F       F P+     +L+  + KA  +    KVY  M      P
Sbjct: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y ++I+++ K G +     +  EM     +PN   +   I    ++G +D A+ + 
Sbjct: 241 DVYTYTNVIKAHCKVGDVIKGKMVLSEME-KECKPNLFTYNAFIGGLCQTGAVDEALEVK 299

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G  P   TY+ L++      +   A  ++ SM S+GL P   TYTAL+    K 
Sbjct: 300 KLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKE 359

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIV 552
             ++ A +I  EM T G  ++V   + ++  I K G +  A+     M  +G+  + +  
Sbjct: 360 GNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTY 419

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
             L +  +K+     A  LL              Y+ +++ L    D Q    ++  +  
Sbjct: 420 NLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR 479

Query: 613 TKHKAHAFLCGLFTGP---EQRKQPVLSFVREFF-HGIDYELEEGAARYFVNVLLNYLVL 668
              K + F+ G        E R +  +  ++    +G+  +L      +  N L+  L  
Sbjct: 480 NGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDL------FCYNCLIIGLCR 533

Query: 669 MGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRML 728
             ++  A+ +     E  + P A  +   I       NL   +  I V     R+ K ML
Sbjct: 534 AKKVEEAKMLLVDMGEKGIKPNAHTYGAFI-------NLYSKSGEIQVA---ERYFKDML 583

Query: 729 YYGVVPRRI 737
             G+VP  +
Sbjct: 584 SSGIVPNNV 592



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 122/286 (42%), Gaps = 6/286 (2%)

Query: 194  VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLE 252
            VP    Y  + D   +S +      LFDEM+    S +G      Y  +I    K   LE
Sbjct: 728  VPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGY----IYCILIDGCGKEGNLE 783

Query: 253  MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
             +   F +           ++N L+  F   G   +A E+++ M   + + +  TY ++I
Sbjct: 784  KALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILI 842

Query: 313  PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             +  K+  ++ A +LF +M+ RN  P+   + SL+ S  + G     + ++ +M+  G  
Sbjct: 843  DAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIA 902

Query: 373  PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
              A  Y  +  +Y K GK   AL+L ++  + G +    +F  +I    K  ++   + +
Sbjct: 903  CDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLEL 962

Query: 433  FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
             ++M +     +  T + LL     SG  D A K+   M   G  P
Sbjct: 963  LSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 1008


>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
           [Vitis vinifera]
          Length = 763

 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 108/494 (21%), Positives = 201/494 (40%), Gaps = 51/494 (10%)

Query: 147 WGPELETQLDKLQFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLF 204
           W   L+  +  L  VP+  H  +   L    +SD +L  FRW +R   +    + ++ + 
Sbjct: 102 WTTRLQNSIRSL--VPQFDHSLVWNVLHGSRNSDHALQFFRWVERAGLFRHDRDTHLKII 159

Query: 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264
           ++L  +   +    +  +M     +    LF     +I    KA  ++ S   F+K+ + 
Sbjct: 160 EILGRASKLNHARCILLDMPKKGVEWDEDLFVL---LIDSYGKAGIVQESVKVFQKMKEL 216

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
             +   +SY+ L  + L +G    A   + +M          TY +MI     S +++ A
Sbjct: 217 GVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETA 276

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
            + F+EMKER   P    + ++++   +  +++ + K ++EM+G    P+   Y ++I+ 
Sbjct: 277 NRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKG 336

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNF---------------------------------- 410
           Y   G++D  LRL++EM+  G +PN                                   
Sbjct: 337 YVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPK 396

Query: 411 --GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
              +F  +I    K+G+LD A  +   M R         Y  L+E    SG  D A+KL 
Sbjct: 397 DNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLL 456

Query: 469 NSMTSAG--LRPG------LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           + +      LRP        S Y  ++  L        A  +  ++   G    ++ +++
Sbjct: 457 DKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNL 516

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  + K+G+ + A   L+ MG   +       R L ES +K      AK  L+  +E+  
Sbjct: 517 IRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGH 576

Query: 581 KVDLVLYTSVLAHL 594
             D  L+ SV+  L
Sbjct: 577 IPDSSLFRSVMESL 590



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 155/365 (42%), Gaps = 11/365 (3%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    +  K+E +   F ++   + +    SY  ++  +++ G       ++E M
Sbjct: 294 TYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEM 353

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN-IFASLVDSMGKAGR 355
           +      +  TY  ++P L    ++  A  + +EM ER   P  N IF  L+    KAG+
Sbjct: 354 KSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQ 413

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM--RIAGFRPNFGL- 412
           LD +  V   M        A  Y  LIE++ K+G  D A++L D++  +    RP   L 
Sbjct: 414 LDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLE 473

Query: 413 -----FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
                + +IIE    SG+   A ++F  + + G +  P  ++ L+  H+  G  +SA ++
Sbjct: 474 MESSGYNLIIEYLCNSGQTSKAETLFRQLMKKG-VQDPIAFNNLIRGHSKEGAPESAFEI 532

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIK 526
              M    +      Y  L+    K+     A   L  M   G+  D S    V+    +
Sbjct: 533 LKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFE 592

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
           DG +  A R +  M   G++ N  +V ++ E+ +     E A   ++  + +  + D   
Sbjct: 593 DGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALGRIDLLMNNGCEPDFDG 652

Query: 587 YTSVL 591
             SVL
Sbjct: 653 LLSVL 657



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 7/223 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS----SKNGISL-FSAYNRVIQYLAKADKLEMS 254
           Y +L +   +S  +D  + L D+++        +N + +  S YN +I+YL  + +   +
Sbjct: 436 YGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKA 495

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F++++    + D  ++N L+     +G P  AFEI + M + E   +   Y L+I S
Sbjct: 496 ETLFRQLMKKGVQ-DPIAFNNLIRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIES 554

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K G    A      M E    P  ++F S+++S+ + GR+ T+ +V   M   G + +
Sbjct: 555 FLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKEN 614

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF-GLFTMI 416
             +   ++E+    G ++ AL   D +   G  P+F GL +++
Sbjct: 615 MDLVAKILEALLLRGHVEEALGRIDLLMNNGCEPDFDGLLSVL 657



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 146/342 (42%), Gaps = 29/342 (8%)

Query: 214 DGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQ 271
           D  L LF+EM     K N ++    Y+ ++  L   +K+  +    K++++      D  
Sbjct: 344 DDGLRLFEEMKSFGIKPNAVT----YSTLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNS 399

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
            +  L+T     G    A ++ ++M +     +   Y ++I +  KSG  D A+KL  ++
Sbjct: 400 IFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKL 459

Query: 332 KERN--FRP---------SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
            E+    RP          +N+    + + G+  + +T  +  M+ +G    P A  + +
Sbjct: 460 IEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMK-KGV-QDPIA--FNN 515

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRP---NFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           LI  ++K G  ++A  +   ++I G R        + ++IES  K G+   A +    M 
Sbjct: 516 LIRGHSKEGAPESAFEI---LKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMI 572

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G +P  S +  ++E     G++ +A ++ N+M   G++  +     +L  L  R  V+
Sbjct: 573 ENGHIPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVE 632

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRF 539
            A   +  +   G   D     +L V    G    AL+ L F
Sbjct: 633 EALGRIDLLMNNGCEPDFDG--LLSVLCAKGKTIAALKLLDF 672


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 134/284 (47%), Gaps = 1/284 (0%)

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           +L  +GR+D  +  ++ M     RP+   F++L+   G   R+  + + + EM   G  P
Sbjct: 103 ALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITP 162

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
                 SLI ++AKAG  D AL+++D+M   G  P+   F  +I++  ++G +D A  +F
Sbjct: 163 DVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVF 222

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           + + +AG  P   T+S L+  HA  GQVD A      M + GL P   TY+AL+    + 
Sbjct: 223 SRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRA 282

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG-SVDHALRWLRFMGSSGIRTNNFIV 552
             +  A + L EM   G   +V     L+     G  ++ + +  + M   G   N    
Sbjct: 283 GQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVPNGVTC 342

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L ++C+K    + A  +LE  ++   +   V YTS+L    R
Sbjct: 343 SALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCAR 386



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 149/308 (48%), Gaps = 4/308 (1%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           C V L   L ++   D  ++ ++ M+    +  I  FS    +I       ++ ++   F
Sbjct: 97  CNVFLR-ALGDAGRIDDCVAAYEAMLACQLRPTIVTFST---LISRAGACRRVRLAERFF 152

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +++L++    D Q+ N L+  F   G P +A ++++ M +   +    T+  +I +  ++
Sbjct: 153 REMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRA 212

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G +D A ++F  + +    P+   F++L+ S    G++D +     EM+  G  P+   Y
Sbjct: 213 GDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTY 272

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +LI +  +AG+L  A +  DEM   G  PN   +T +I++  K  +L+ +  +F +M  
Sbjct: 273 SALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRE 332

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G +P   T S L++    + ++D A  +   M   G+ P   TYT+LLT  A+    D 
Sbjct: 333 RGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCARLGQADR 392

Query: 499 AAKILLEM 506
           A  +L E+
Sbjct: 393 AGIVLDEL 400



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 5/291 (1%)

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLAKSGRLDAAIKLFQEM 331
           NV +    + G        YE+M    C L  +  T+  +I       R+  A + F+EM
Sbjct: 98  NVFLRALGDAGRIDDCVAAYEAMLA--CQLRPTIVTFSTLISRAGACRRVRLAERFFREM 155

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            E    P      SL+++  KAG  D ++KV+ +M   G  PS   + +LI++  +AG +
Sbjct: 156 LEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDI 215

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D A +++  +  AG  PN   F+ +I SHA  G++D A S   +M   G  P   TYS L
Sbjct: 216 DRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSAL 275

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +     +GQ+  A +  + M   G+ P + T+T L+    K K ++ + K+  EM+  G 
Sbjct: 276 INACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGT 335

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             + V+ S ++   +K   +D A   L  M   GI         L   C +
Sbjct: 336 VPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCAR 386



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 1/224 (0%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I + AK+G  D A+K+F +M      PS   F +L+D+ G+AG +D + +V+  +   G
Sbjct: 170 LINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAG 229

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P+   + +LI S+A  G++D A     EMR  G  PN   ++ +I +  ++G+L  A 
Sbjct: 230 LSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAF 289

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
               +M   G  P   T++ L++      +++ + KL+  M   G  P   T +AL+   
Sbjct: 290 QTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDAC 349

Query: 491 AKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHA 533
            K   +D+A  +L  M  +G    +V+ + +L    + G  D A
Sbjct: 350 LKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCARLGQADRA 393



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 12/218 (5%)

Query: 327  LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM----QGCGHRPSAPMYVSLI 382
            +FQEM+ R  RP    + +LV++    G  D ++ V   M    +G G +P A  Y SLI
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 383  ESYAKA--GKLDTALRLWDEM--RIAGF----RPNFGLFTMIIESHAKSGKLDIAMSIFT 434
            ++ A+A   +++ A  ++  M  R   F    RP    +  ++ +   +     A+ I+ 
Sbjct: 941  KAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWR 1000

Query: 435  DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
                AG  P P +    L     +G VD+A+++Y+ M   G+RP       L+ L     
Sbjct: 1001 QQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNLCRANG 1060

Query: 495  LVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDH 532
            L  VAA+I+ E      + +   S+V M     GS   
Sbjct: 1061 LQSVAARIMRERSKTDATTNRRRSNVSMRRNSAGSTSR 1098



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 114/250 (45%), Gaps = 5/250 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKA 248
           ++   P  +    L +   ++   D  L +FD+M    S+ G++     +N +I    +A
Sbjct: 157 EAGITPDVQAINSLINAFAKAGSPDQALKVFDQM----SRYGVTPSVITFNTLIDACGRA 212

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             ++ +   F ++  +    + ++++ L+     +G   +AF   + M       +  TY
Sbjct: 213 GDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTY 272

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I +  ++G+L  A +   EM      P+   + +L+D+ GK   L+ S K++ EM+ 
Sbjct: 273 SALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRE 332

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+     +L+++  KA +LD A  + + M   G  P    +T ++   A+ G+ D 
Sbjct: 333 RGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCARLGQADR 392

Query: 429 AMSIFTDMER 438
           A  +  ++ +
Sbjct: 393 AGIVLDELNK 402



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 2/144 (1%)

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
           G+A ++D + KV   M      P    ++ L+ +   AG LD A+ L +  R  G     
Sbjct: 553 GQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEI 612

Query: 411 G--LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
               ++ ++ +  ++ KL  A  I   M   G  PT  TY  L+E+   S    +A++++
Sbjct: 613 NELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVF 672

Query: 469 NSMTSAGLRPGLSTYTALLTLLAK 492
            +M + G+RPG+ +YT+LL  +++
Sbjct: 673 EAMETEGVRPGVRSYTSLLKAISE 696



 Score = 47.8 bits (112), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE-SMEKG 299
           ++Q   +AD+++ ++   + +++     D +++ +L+      G   KA E+ E S  +G
Sbjct: 548 LLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEG 607

Query: 300 ECS-LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
             S ++  TY  ++ +  ++ +L  A ++ Q M+E   +P+   + +L++    +     
Sbjct: 608 HGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKA 667

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           +++V+  M+  G RP    Y SL+++ ++   L T
Sbjct: 668 AVEVFEAMETEGVRPGVRSYTSLLKAISEENTLRT 702



 Score = 39.3 bits (90), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 8/152 (5%)

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA- 439
           L++ + +A ++D A ++ + M      P+   + +++ +   +G LD A+ +   MER+ 
Sbjct: 548 LLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVEL---MERSR 604

Query: 440 ----GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
               G      TYS LL     + ++  A ++  SM   G++P   TY AL+ +    + 
Sbjct: 605 AEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRD 664

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
              A ++   M+T G    V +   L+  I +
Sbjct: 665 SKAAVEVFEAMETEGVRPGVRSYTSLLKAISE 696


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 193/428 (45%), Gaps = 50/428 (11%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKL 251
           +VPG  C+  L   +  S  F+     F+E     SK  + L   ++  VI+   +A ++
Sbjct: 125 FVPGSNCFNNLLTFVVGSSSFNQWWCFFNE-----SKIKVVLDVYSFGIVIKGCCEAGEI 179

Query: 252 EMSY---------------CCFKKVLDSDCK--------------------IDTQSYNVL 276
           E S+                 +  ++D  CK                     +  +Y VL
Sbjct: 180 EKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVL 239

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +      G+  + FE+YE M++     +  TY  ++  L K GR   A K+F EM+ER  
Sbjct: 240 IHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGV 299

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
             +   + +L+  + +  + + + KV  +M+     P+   Y +LI+ +   GKL  AL 
Sbjct: 300 SCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALS 359

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +++  G  P+   + +++    + G    A  +  +ME  G  P+  TY+ L++  A
Sbjct: 360 LCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFA 419

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGYSVDV 515
            S  +++A++L +SM   GL P + TY+ L+     +  ++ A+++   M + M    +V
Sbjct: 420 RSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEV 479

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN----NFIVRQLFESCMKNALYESAKPL 571
             + +++ Y K+GS   ALR  R M    +  N    ++++R L   C +  L E A+ L
Sbjct: 480 IYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVL---CKERKLKE-AEDL 535

Query: 572 LETYVESA 579
           +E  ++S 
Sbjct: 536 VEKMIDSG 543



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 134/295 (45%), Gaps = 4/295 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN V+  L K  + + ++  F ++ +     +  +YN L+     +    +A ++ + M
Sbjct: 270 TYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQM 329

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +    + +  TY  +I      G+L  A+ L +++K R   PS   +  LV    + G  
Sbjct: 330 KSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDT 389

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + K+  EM+  G +PS   Y  LI+++A++  ++TA++L   M   G  P+   ++++
Sbjct: 390 SGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVL 449

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I      G+++ A  +F  M      P    Y+ ++  +   G    A++L+  M    L
Sbjct: 450 IHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKEL 509

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
            P +++Y+ L+ +L K + +  A  ++ +M   G    +  SD +   I     D
Sbjct: 510 APNVASYSYLIRVLCKERKLKEAEDLVEKMIDSG----IDPSDTICNLISRAKTD 560



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 136/324 (41%), Gaps = 35/324 (10%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL--------------------- 346
           YE++I +  +S  LD++I  F EM ++ F P  N F +L                     
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK 156

Query: 347 ------VDSMG-------KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
                 V S G       +AG ++ S  + +E++  G  P+  +Y +LI+   K G+++ 
Sbjct: 157 IKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEK 216

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  L+ EM   G   N   +T++I    K+G       ++  M+  G  P   TY+C++ 
Sbjct: 217 AKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMN 276

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G+   A K+++ M   G+   + TY  L+  L +    + A K++ +MK+   + 
Sbjct: 277 QLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINP 336

Query: 514 DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           ++   + L+  +   G +  AL   R + S G+  +      L     +      A  ++
Sbjct: 337 NLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMV 396

Query: 573 ETYVESAAKVDLVLYTSVLAHLVR 596
           +   E   K   V YT ++    R
Sbjct: 397 KEMEERGIKPSKVTYTILIDTFAR 420



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 2/226 (0%)

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           +  + +Y  +I +Y ++  LD+++  ++EM   GF P    F  ++     S   +    
Sbjct: 91  KTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWC 150

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
            F + +    L   S +  +++    +G+++ +  L   +   G  P +  YT L+    
Sbjct: 151 FFNESKIKVVLDVYS-FGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCC 209

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           K+  ++ A  +  EM   G   +     VL+    K+G           M   G+  N +
Sbjct: 210 KKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLY 269

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               +     K+   + A  + +   E     ++V Y +++  L R
Sbjct: 270 TYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCR 315


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 147/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L  FR  +   ++VP D C  +L   + + + F  +   + E++       +  F   N
Sbjct: 85  ALECFRLTREHKFWVPFDTCRKVLEHFM-KLKYFKLVWGFYKEILECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F ++     +    S+N LM  ++  G   + F +  +M   
Sbjct: 141 ILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  +++ A +LF EM      P+   F +L+D   K G +D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M+ Y EM   G  P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 METYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A+     M +         Y+ L+      GQ   A K+   M S GL+P 
Sbjct: 321 SCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
             TYT ++    K+  V   +K+L EM+  G+
Sbjct: 381 NGTYTMIINEFCKKGDVKTGSKLLKEMQRDGH 412



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 139/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++  K    ++ +  +K++L+         +N+LM  F  +G    A  +++
Sbjct: 101 FDTCRKVLEHFMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            + K        ++  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 161 EITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKES 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           +++ + +++ EM G G  P+   + +LI+ + K G +D A+  + EM   GF P+   + 
Sbjct: 221 KMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +++A+     M   
Sbjct: 281 TLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   D     +++  + K G V   
Sbjct: 341 NIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTG 400

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 401 SKLLKEMQRDG 411



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 140/317 (44%), Gaps = 2/317 (0%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  A++ F+  +E  F   F+    +++   K     
Sbjct: 59  KGAQRSDVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G++  A  ++DE+   G RP+   F  ++
Sbjct: 119 LVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       +++ A +L+  M   GL 
Sbjct: 179 NGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   +D+A +   EM   G+S D+   + L+  + K G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L +   K    E+A    +  ++   ++D V YT++++ L R
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCR 358

Query: 597 -CQDEQNERHLMAILSA 612
             Q    E+ L  +LS 
Sbjct: 359 EGQSVDAEKMLREMLSV 375



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 92/214 (42%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y+VL+     +     A E++  M       +G T+  +I    K+G +D A++ +
Sbjct: 205 DVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETY 264

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM  + F P    + +L+  + K G L  +  +  EM   G +P    Y +LI+   K 
Sbjct: 265 KEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKE 324

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+TAL     M     R +   +T +I    + G+   A  +  +M   G  P   TY
Sbjct: 325 GDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTY 384

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           + ++      G V +  KL   M   G  P + T
Sbjct: 385 TMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418


>gi|222626074|gb|EEE60206.1| hypothetical protein OsJ_13175 [Oryza sativa Japonica Group]
          Length = 789

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 133/579 (22%), Positives = 236/579 (40%), Gaps = 26/579 (4%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD +L LF EM HD S +     + YN ++   A     + S    + +L++    DT S
Sbjct: 30  FDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTAS 89

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           Y  ++  F   G   +  E++  M     + D S Y  ++ +    G    A+ + ++M+
Sbjct: 90  YRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQ 149

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P+   +  L+D  G+ GR D   +++ EM+     P    Y  L   +   G   
Sbjct: 150 ADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMR-TTVPPDTATYNVLFRVFGDGGFFK 208

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
             + L+ +M  +   P+      ++ +  + G  + A  +   +   G +PT   Y+ L+
Sbjct: 209 EVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLV 268

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGY 511
           E    +   + A   +N MT  G  P + TY AL    AK  L   A  I   M      
Sbjct: 269 EALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAI 328

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
             D  + D L+  Y +   +D A++    M  S    +   +  +  + C+   + ES +
Sbjct: 329 QKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 388

Query: 570 PLLETYVESAAKV-DLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA-HAFLCGLFTG 627
              E  ++S   V  ++ Y  +L+   R     +   L+  +   +  + H  +  +  G
Sbjct: 389 QFEE--LQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKG 446

Query: 628 P--EQRKQPVLSFV--REFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAY 683
              +     ++ +V       G DY L       F N LL+ L   GQ  RA  V   A 
Sbjct: 447 EYDDDSNWQMVEYVLDNSNLEGCDYSLR------FFNALLDVLWWFGQKGRAARVLDQAL 500

Query: 684 ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGP 743
           +  LFP+ +  D  + WS DV  +SVG +L+AV   L++   R+     +P+   +V   
Sbjct: 501 KYGLFPE-LFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDEDLPQLASVV--- 556

Query: 744 TLKIVIAQM-LSSVESPFEVSKVVLRAPGDSVMEWFKKP 781
              ++  QM  S+V     ++KVV     D++   F  P
Sbjct: 557 ---VLRGQMEKSTVTRGLPIAKVVYSFLNDTLSSSFHYP 592



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 119/291 (40%), Gaps = 21/291 (7%)

Query: 305 GSTYELMIPSLAKSGR----LDAAIKLFQEMKER---NFRPSFNIFASLVDSMGKAGRLD 357
            +TY  ++ + A++       D  + LF EM+     + RP    + +L+ +       D
Sbjct: 10  AATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSD 69

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            S  +   M   G  P    Y  +++++A AG L     L+ EM   G  P+   +  ++
Sbjct: 70  QSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLM 129

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E+H   G    A+++   M+  G  PT +TY  LL+++   G+ D   +L+  M +  + 
Sbjct: 130 EAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VP 188

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV-DHALRW 536
           P  +TY  L  +           ++  +M       D+   + +MV    G + + A   
Sbjct: 189 PDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREV 248

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAK------------PLLETY 575
           L ++ + G+         L E+    A+YE A             P +ETY
Sbjct: 249 LDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETY 299



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 33/241 (13%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHD---------------------------- 226
           P    Y +LF V  +   F  ++ LF +M+H                             
Sbjct: 189 PDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREV 248

Query: 227 ----SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
               +++  +    AY  +++ L  A   E +Y  F  + +       ++YN L   F  
Sbjct: 249 LDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAK 308

Query: 283 KGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
            GL  +A  I+  M        D  +++ +I +  +  +LD A+K + EM++  F P   
Sbjct: 309 GGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDER 368

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
               ++++   AG +D S + + E+Q     PS   Y  ++  YA+  +   A  L +EM
Sbjct: 369 SLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 428

Query: 402 R 402
           +
Sbjct: 429 K 429


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 170/375 (45%), Gaps = 1/375 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I       +L  ++    K+L   C+ D  ++N L+     +G   +A  +++    
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 248

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY  ++  L K G   AAI+L + M ++N RP+   + +++DS+ K  ++  
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 308

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  ++ EM   G  P    Y SLI +     +      L +EM  +   PN  +F+ +++
Sbjct: 309 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 368

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +  K G + IA  +   M + G  P   TY+ L++ H    ++D A+K++++M   G  P
Sbjct: 369 ALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVP 428

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL 537
            + +Y  L+    + + +D A  +L +M   G   D V+ + ++      G + HA+   
Sbjct: 429 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 488

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             M +SG   +    R L +   KN     A  LL+    S    D+++Y   +  + R 
Sbjct: 489 HEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRA 548

Query: 598 QDEQNERHLMAILSA 612
            + +  R L + LS+
Sbjct: 549 GELEAARDLFSNLSS 563



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 143/324 (44%), Gaps = 3/324 (0%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +L +EMV+      + +FS    V+  L K   + +++     ++    + D  +Y  LM
Sbjct: 346 TLLNEMVNSKIMPNVVVFST---VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALM 402

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                +    +A +++++M    C  +  +Y ++I    +  R+D A+ L ++M  +   
Sbjct: 403 DGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLI 462

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
                + +L+  +   GRL  ++ ++ EM   G  P    Y  L++   K   L  A+ L
Sbjct: 463 ADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVL 522

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
              +  +    +  ++ + I+   ++G+L+ A  +F+++   G  P   TY+ ++     
Sbjct: 523 LKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCK 582

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G +D A KL+  M   G       Y  ++    +      A ++L EM   G+S DVS 
Sbjct: 583 RGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVST 642

Query: 518 SDVLMVYIKDGSVDHALRWLRFMG 541
           + +++  + D  +D +   LR  G
Sbjct: 643 TTLIVEMLSDDGLDQSFERLRLRG 666



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 119/283 (42%), Gaps = 2/283 (0%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           LD A+  F  M   +  PS   F  L+ S+ K     T + +  +M   G  P       
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 190

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI S+    +L  A  +  ++   G +P+   F  +I      GK+  A+ +F      G
Sbjct: 191 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 250

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           F P   TY  L+      G   +A++L  SM     RP +  Y  ++  L K + V  A 
Sbjct: 251 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 310

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +  EM T G S D+   + L+  + +     H    L  M +S I  N  +   + ++ 
Sbjct: 311 NLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL 370

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQ 601
            K  +   A  +++  ++   + D+V YT+++  H +R + ++
Sbjct: 371 CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDE 413


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/501 (22%), Positives = 213/501 (42%), Gaps = 61/501 (12%)

Query: 119 HVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHI---TQALKVIN 175
            V+ G I+  F  +S++   V          E ET   K +    M++    +Q+L    
Sbjct: 64  QVISGKIQSQFFTSSSLLHYV---------TESETSETKSRLYEVMINAYVQSQSL---- 110

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL- 234
             D+S+S F     +  +VPG  C+  L   +  S  F+     F+E     SK  + L 
Sbjct: 111 --DSSISYFNEMVDKG-FVPGSNCFNNLLTFVVGSSSFNQWWRFFNE-----SKIKVDLD 162

Query: 235 FSAYNRVIQYLAKADKLEMSY---------------CCFKKVLDSDCK------------ 267
             ++  VI+   +A ++E S+                 +  ++D  CK            
Sbjct: 163 VYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFF 222

Query: 268 --------IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
                    +  +Y VL+      G+  + FE+YE M++     +  TY  ++    K G
Sbjct: 223 EMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDG 282

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R   A KLF EM+ER    +   + +L+  + +  + + + KV  +M+  G  P+   Y 
Sbjct: 283 RTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYN 342

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI+ +   GKL  AL L  +++  G  P+   + +++    K G    A  +  +ME  
Sbjct: 343 TLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEER 402

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P+  TY+ L++  A    ++ A++L + M   GL P + TY+ L+     +  ++ A
Sbjct: 403 GIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEA 462

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
           +++   M       + V  + +++ Y K+GS   ALR  R M    +  N    R + E 
Sbjct: 463 SRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEV 522

Query: 559 CMKNALYESAKPLLETYVESA 579
             K    + A+ L+E  +++ 
Sbjct: 523 LCKERKSKEAEGLVEKMIDTG 543



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 9/277 (3%)

Query: 219 LFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           LFDEM     + G+S     YN +I  L +  K   +     ++       +  +YN L+
Sbjct: 290 LFDEM----RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLI 345

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             F   G   KA  +   ++    S    TY +++    K G    A K+ +EM+ER  +
Sbjct: 346 DGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIK 405

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           PS   +  L+D+  +   ++ ++++   M+  G  P    Y  LI  +   G+++ A RL
Sbjct: 406 PSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +  M      PN  ++  ++  + K G    A+ +F +ME     P  ++Y  ++E+   
Sbjct: 466 FKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCK 525

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
             +   A  L   M   G+ P      ++L L+++ K
Sbjct: 526 ERKSKEAEGLVEKMIDTGIDPS----DSILNLISRAK 558



 Score = 47.8 bits (112), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 83/191 (43%), Gaps = 8/191 (4%)

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           L+ ++I ++ +S  LD ++S F +M   GF+P  + ++ LL     S   +   + +N  
Sbjct: 96  LYEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNE- 154

Query: 472 TSAGLRPGLSTYTALLTL--LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
             + ++  L  Y+  + +    +   ++ +  +L+E++  G+S +V     L+    K G
Sbjct: 155 --SKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRG 212

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
            ++ A      MG  G+  N +    L     KN + +    + E   E     +L  Y 
Sbjct: 213 EIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYN 272

Query: 589 SVLAHLVRCQD 599
            V+     C+D
Sbjct: 273 CVMNQ--HCKD 281


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 155/324 (47%), Gaps = 3/324 (0%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + LF++M   +SKN I     ++ ++    K   ++ +      ++    K D  +Y+ L
Sbjct: 388 IDLFNKM---TSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSL 444

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +       KA  I+ +M     + +  +Y +MI    K   +D A+KLF+EM  +  
Sbjct: 445 MDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQI 504

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    ++SL+D + K+GR+  ++++  EM   G +P    Y S++++  K   +D A+ 
Sbjct: 505 FPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAIT 564

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +++  G RP+   +T++++   +SGKL+ A  +F D+   G+      Y+ +++   
Sbjct: 565 LLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFC 624

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G  D A+ L + M   G  P   TY  ++  L ++   D+A K+L EM   G  V ++
Sbjct: 625 DKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLLVALT 684

Query: 517 ASDVLMVYIKDGSVDHALRWLRFM 540
              V  + ++         W+ F+
Sbjct: 685 DDLVASILVRRTWCARLALWVTFI 708



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 148/325 (45%), Gaps = 5/325 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  + K   +  ++  + + +      D  +YN L++ F   G    A +++  M 
Sbjct: 336 YNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMT 395

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  T+ +++    K G +  A  +   M +++ +P    ++SL+D       ++
Sbjct: 396 SKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVN 455

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  ++  M   G   +   Y  +I  + K   +D A++L+ EM      P+   ++ +I
Sbjct: 456 KAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLI 515

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   KSG++  A+ +  +M   G  P   TY+ +L+       VD A+ L   +   G+R
Sbjct: 516 DGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIR 575

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRW 536
           P ++TYT L+  L +   ++ A K+  ++   GY++DV A  V++  +   G  D AL  
Sbjct: 576 PDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALAL 635

Query: 537 LRFMGSSGI----RTNNFIVRQLFE 557
           L  M  +G     +T   I+  LFE
Sbjct: 636 LSKMEENGCIPDAKTYEIIILSLFE 660



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 154/345 (44%), Gaps = 3/345 (0%)

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+L +  + DT +    +  F  KG  ++A   ++ +      LD  +Y  +I  L K G
Sbjct: 253 KILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVG 312

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
              AA++L +    +  +P   ++ +++D M K   ++ +  +Y E       P    Y 
Sbjct: 313 ETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYN 372

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI  +   GKL  A+ L+++M      P+   F+++++   K G +  A ++   M + 
Sbjct: 373 ALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQ 432

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
              P   TYS L++ +    +V+ A  ++N+M+  G+   + +Y  ++    K K+VD A
Sbjct: 433 SIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEA 492

Query: 500 AKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            K+  EM       DV + S ++    K G + +AL  +  M   G + +      + ++
Sbjct: 493 MKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDA 552

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
             K    + A  LL        + D+  YT ++  L  CQ  + E
Sbjct: 553 LCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGL--CQSGKLE 595


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 150/332 (45%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   +++ +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEDSLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  +++++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K++ EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLMKEMQRDGY 412



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 151/340 (44%), Gaps = 1/340 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           ++  E  +  S   F  L+    K G +  +  V+  +   G RP+A  + +L+  Y + 
Sbjct: 125 EDSLECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D V+ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           A+ +L   +    K ++  YT ++    +  D      LM
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLM 404



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 143/319 (44%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  KE  FR  F+    +++ + K     
Sbjct: 59  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y +   CG+  S   +  L+  + K G++  A  ++D +   G RP    F  ++
Sbjct: 119 LVWGFYEDSLECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    +   M+ +G  P   TYS L+       ++D A +L+N M   GL 
Sbjct: 179 NGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L +   K    E+A    +  ++   ++D V YT++++ L  
Sbjct: 299 IDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL-- 356

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 357 CQEGRSVDAEKMLREMLSV 375



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 484

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 196/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A+ +   M R         Y  L+E    +GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAVDVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPADAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 170/380 (44%), Gaps = 1/380 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I       +L  ++    K+L   C+ D  ++N L+     +G   +A  +++    
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 210

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY  ++  L K G   AAI+L + M ++N RP+   + +++DS+ K  ++  
Sbjct: 211 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 270

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  ++ EM   G  P    Y SLI +     +      L +EM  +   PN  +F+ +++
Sbjct: 271 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 330

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +  K G + IA  +   M + G  P   TY+ L++ H    ++D A+K++++M   G  P
Sbjct: 331 ALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVP 390

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL 537
            + +Y  L+    + + +D A  +L +M   G   D V+ + ++      G + HA+   
Sbjct: 391 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 450

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             M +SG   +    R L +   KN     A  LL+    S    D+++Y   +  + R 
Sbjct: 451 HEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRA 510

Query: 598 QDEQNERHLMAILSATKHKA 617
            + +  R L + LS     A
Sbjct: 511 GELEAARDLFSNLSCQGFAA 530



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 119/283 (42%), Gaps = 2/283 (0%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           LD A+  F  M   +  PS   F  L+ S+ K     T + +  +M   G  P       
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 152

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI S+    +L  A  +  ++   G +P+   F  +I      GK+  A+ +F      G
Sbjct: 153 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 212

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           F P   TY  L+      G   +A++L  SM     RP +  Y  ++  L K + V  A 
Sbjct: 213 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 272

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +  EM T G S D+   + L+  + +     H    L  M +S I  N  +   + ++ 
Sbjct: 273 NLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL 332

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQ 601
            K  +   A  +++  ++   + D+V YT+++  H +R + ++
Sbjct: 333 CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDE 375



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/313 (19%), Positives = 130/313 (41%), Gaps = 3/313 (0%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L + L +  +    + L   MV  + +  +    AYN +I  L K  ++  ++  F 
Sbjct: 220 YGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVI---AYNTIIDSLCKDRQVTEAFNLFS 276

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++      D  +YN L+    N         +   M   +   +   +  ++ +L K G
Sbjct: 277 EMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEG 336

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            +  A  +   M +R   P    + +L+D       +D ++KV+  M   G  P+   Y 
Sbjct: 337 MIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYN 396

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            LI  Y +  ++D A+ L ++M + G   +   +  +I      G+L  A+++F +M  +
Sbjct: 397 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVAS 456

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G +P   TY  LL+    +  +  AM L  ++  + L   +  Y   +  + +   ++ A
Sbjct: 457 GQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAA 516

Query: 500 AKILLEMKTMGYS 512
             +   +   G++
Sbjct: 517 RDLFSNLSCQGFA 529


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 152/337 (45%), Gaps = 1/337 (0%)

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +L   C+ D  +Y+ ++    N G   +A  I   M    C  D +T+  +I +L    +
Sbjct: 327 MLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQ 386

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L+ A+ L +E+  +   P+   F  L++++ K G    +++++ EM+  G  P    Y  
Sbjct: 387 LEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNI 446

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI++   +GKL  AL L  EM ++G   +   +  II+   K  +++ A  +F  M+  G
Sbjct: 447 LIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTG 506

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
                 T++ L++   ++ ++D A +L + M S GL+P   TY ++LT   K+  +  AA
Sbjct: 507 IGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAA 566

Query: 501 KILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            IL  M   G+ VDV     L+  + K      AL+ LR M   G++        + +S 
Sbjct: 567 DILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSL 626

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            +      A  L     E     D   Y  V   L R
Sbjct: 627 FRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCR 663



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 108/487 (22%), Positives = 196/487 (40%), Gaps = 48/487 (9%)

Query: 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYC 256
           E Y  L  VL E      + S + EM    S  GI      +N VI  L +A +   +  
Sbjct: 162 EVYNHLLTVLAEGSKIKLLESAYTEM----SSQGIEPDVVTFNTVIDALCRARQARTAVL 217

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK---------------GEC 301
             +++   D   D  ++  LM  F+ +G    A  +   M +               G C
Sbjct: 218 MLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYC 277

Query: 302 SL--------------------DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
            L                    D  T+   +  L ++G +D A+K+   M +    P   
Sbjct: 278 KLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVY 337

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            ++++++ +   G L+ +  +  +M   G  P    + +LI +     +L+ AL L  E+
Sbjct: 338 TYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLAREL 397

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
            + G  PN   F ++I +  K G   +A+ +F +M+ +G  P   TY+ L++   SSG++
Sbjct: 398 TVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKL 457

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
             A+ L   M  +G      TY  ++  L KR+ ++ A ++  +M   G   +    + L
Sbjct: 458 AKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTL 517

Query: 522 MVYIKDGS-VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  + +   +D A   +  M S G++ NN     +     K      A  +L+T   +  
Sbjct: 518 IDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGF 577

Query: 581 KVDLVLYTSVLAHLVRCQDEQNERHL-----MAILSATKHKAHAFLCGLFTGPEQRKQPV 635
           +VD+V Y +++  L + +  Q    L     M  +  T    +  +  LF G   R    
Sbjct: 578 EVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRD--A 635

Query: 636 LSFVREF 642
           LS  RE 
Sbjct: 636 LSLFREM 642



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 149/339 (43%), Gaps = 6/339 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ VI  L    +LE +     +++DS C  DT ++N L+     +    +A ++   + 
Sbjct: 339 YSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELT 398

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               S +  T+ ++I +L K G    A++LF+EMK     P    +  L+D++  +G+L 
Sbjct: 399 VKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLA 458

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  EM+  G   S   Y ++I+   K  +++ A  ++D+M + G   N   F  +I
Sbjct: 459 KALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLI 518

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +    + ++D A  +   M   G  P   TY+ +L  +   G +  A  +  +MT+ G  
Sbjct: 519 DGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFE 578

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD-VLMVYIKDGSVDHALRW 536
             + TY  L+  L K +    A K+L  M+  G      A + V+    +  +   AL  
Sbjct: 579 VDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSL 638

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
            R M   G   + F  + +F       L     P+ E +
Sbjct: 639 FREMTEVGGPPDAFTYKIVFR-----GLCRGGGPIKEAF 672



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 165/381 (43%), Gaps = 16/381 (4%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H+  ALKV+      L L      Q    P    Y  + + L  + + +    + ++MV 
Sbjct: 316 HVDHALKVL-----GLML------QEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVD 364

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
                 +   + +N +I  L   ++LE +    +++       +  ++N+L+      G 
Sbjct: 365 SGC---LPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGD 421

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           P+ A  ++E M+   C+ D  TY ++I +L  SG+L  A+ L +EM+      S   + +
Sbjct: 422 PHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNT 481

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           ++D + K  R++ + +V+ +M   G   +A  + +LI+    A ++D A  L D+M   G
Sbjct: 482 IIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEG 541

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +PN   +  I+  + K G +  A  I   M   GF     TY+ L+     + +  +A+
Sbjct: 542 LQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAAL 601

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
           KL   M   G++P    Y  ++  L +      A  +  EM  +G   D     ++   +
Sbjct: 602 KLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGL 661

Query: 526 --KDGSVDHALRWLRFMGSSG 544
               G +  A  +L  M  +G
Sbjct: 662 CRGGGPIKEAFDFLVEMADNG 682



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 141/341 (41%), Gaps = 41/341 (12%)

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERN--FRPSFNIFASLVDSMGKAGRLDTSMKV 362
           GS  E ++ +L +    +AA+++      R+    PS +++  ++  +G AG  D    +
Sbjct: 53  GSEQERLVTALREQADPEAALRMLNSALARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVL 112

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW-DEMRIAGFRPNFGLFTMIIESHA 421
             EM+  GH     +  S I SYA+    D A  L  +++ + G + N  ++  ++   A
Sbjct: 113 VGEMRREGHEVGLGLVQSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLA 172

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           +  K+ +  S +T+M   G  P   T++ +++    + Q  +A+ +   M+S  + P  +
Sbjct: 173 EGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDET 232

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL-------------MVYI--- 525
           T+T L+    +   ++ A ++   M  MG S      +VL             + YI   
Sbjct: 233 TFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQE 292

Query: 526 --------------------KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
                               ++G VDHAL+ L  M   G   + +    +      N   
Sbjct: 293 IADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGEL 352

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
           E AK ++   V+S    D   + +++  L  C + Q E  L
Sbjct: 353 EEAKGIVNQMVDSGCLPDTTTFNTLIVAL--CTENQLEEAL 391


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 184/440 (41%), Gaps = 15/440 (3%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           I   +  + D+ ++L+L R  +  S  +P    Y  + D L +        +LF EM   
Sbjct: 223 IVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEM--- 279

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
             K        YN +I     + +   +    +++L+     D  +++ L+  F+ +G  
Sbjct: 280 QEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKF 339

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
           ++A E+Y+ M          TY  MI    K  RLDAA  +F     +   P    F +L
Sbjct: 340 FEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTL 399

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +    +A R+D  +K+  EM   G   +   Y +LI  + + G L+ A  L  EM  +G 
Sbjct: 400 IAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGV 459

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA-----------GFLPTPSTYSCLLEMH 455
            PN      +++    +GKL  A+ +F  M+++           G  P   TY+ L+   
Sbjct: 460 CPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGL 519

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
            + G+   A +LY  M   G+ P   TY++++  L K+  +D A ++   M +  +S DV
Sbjct: 520 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDV 579

Query: 516 SASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
              + L+  Y K G VD  L     MG  GI  +      L     K    + A  + + 
Sbjct: 580 VTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQE 639

Query: 575 YVESAAKVDLVLYTSVLAHL 594
            + S    D +   ++L  L
Sbjct: 640 MISSGVYPDTITIRNMLTGL 659



 Score = 89.4 bits (220), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 8/246 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L     +  D +    L  EM+      N ++  +  + +       D LEM     
Sbjct: 431 YTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 490

Query: 259 KKVLDSDC-------KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           K  +D D        + D Q+YN+L+   +N+G   +A E+YE M       D  TY  M
Sbjct: 491 KSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L K  RLD A ++F  M  ++F P    F +L+    KAG +D  ++++ EM   G 
Sbjct: 551 IDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGI 610

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
              A  Y++LI  + K   +D AL ++ EM  +G  P+      ++       +L+ A++
Sbjct: 611 VADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVA 670

Query: 432 IFTDME 437
           +  D++
Sbjct: 671 MLEDLQ 676



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 50/343 (14%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           L+DEM+    ++ I     Y+ +I    K ++L+ +   F       C  D  ++N L+ 
Sbjct: 345 LYDEML---PRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIA 401

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +          ++   M +     +  TY  +I    + G L+AA  L QEM      P
Sbjct: 402 GYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCP 461

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQG-------------------------CG--- 370
           +     +L+D +   G+L  +++++  MQ                          CG   
Sbjct: 462 NVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLIN 521

Query: 371 ---------------HR---PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
                          HR   P    Y S+I+   K  +LD A +++D M    F P+   
Sbjct: 522 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVT 581

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           F  +I  + K+G +D  + +F +M + G +    TY  L+        +D A+ ++  M 
Sbjct: 582 FNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMI 641

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK-TMGYSVD 514
           S+G+ P   T   +LT L  ++ ++ A  +L +++ ++GY ++
Sbjct: 642 SSGVYPDTITIRNMLTGLWSKEELERAVAMLEDLQMSVGYQLE 684



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 6/238 (2%)

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           LD ++ ++  M      PS   +  L+    + G+ D  + L  +M +     N   FT+
Sbjct: 62  LDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTI 121

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++      KL  A+S F  + + GF PT  T++ LL       ++  A+ L++ M    
Sbjct: 122 LMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMC--- 178

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHAL 534
            +P + T+T L+  L +   V  A  +L  M   G   + ++   ++    K G    AL
Sbjct: 179 -KPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSAL 237

Query: 535 RWLRFMGS-SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             LR M   S I  N  I   + +   K+  +  A  L     E     D+V Y  ++
Sbjct: 238 NLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMI 295


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 198/432 (45%), Gaps = 8/432 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           ND   ++SLF    RQ+   P D  +  +   L +S+ +  +LSLF +M +   K     
Sbjct: 49  NDVVDAVSLFNCLLRQNP-TPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPN--- 104

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F  +N +I    +   +  ++    K+L    + DT + N  +  F  KG  ++A   ++
Sbjct: 105 FVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHD 164

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            +      LD  +Y  +I  L K G   AA++L + +  +  +    ++++++DSM K  
Sbjct: 165 KLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDK 224

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            ++ +  +Y EM       +   Y +LI  +   GKL  A+ L+++M      P+   F 
Sbjct: 225 NVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFN 284

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           +++++  K G++  A +    M + G  P   TY+ L++ +    +V+ A  + N+M+  
Sbjct: 285 ILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHR 344

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
           G+   + +Y  ++    K K+VD A K+  EM       +V   + L+  + K G + +A
Sbjct: 345 GVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYA 404

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L  +  M   G + +      + ++  KN L + A  LL    +   + ++  YT ++  
Sbjct: 405 LELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDG 464

Query: 594 LV---RCQDEQN 602
           L    R +D +N
Sbjct: 465 LCKGGRLEDARN 476



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 169/388 (43%), Gaps = 6/388 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L K  +   +    ++V     ++D   Y+ ++           AF++Y  M
Sbjct: 177 SYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEM 236

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S +  TY  +I      G+L  AI LF +M   N  P    F  LVD+  K GR+
Sbjct: 237 VSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRV 296

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +      M   G +P    Y SL++ Y    +++ A  + + M   G       + ++
Sbjct: 297 KEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIV 356

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K   +D AM +F +M      P   TY+ L++    SG++  A++L + M   G 
Sbjct: 357 INGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQ 416

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +P + TY+++L  L K  LVD A  +L+++K  G   ++    +L+  + K G ++ A  
Sbjct: 417 QPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARN 476

Query: 536 WLRFMGSSG--IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
               +   G  +  N + V  + +    + L++ A  LL    +++   D + Y  ++  
Sbjct: 477 IFEDLLVKGYNLTVNTYTV--MIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICS 534

Query: 594 LVRCQDEQNERHLMAILSATKHKAHAFL 621
           L   +DE ++   +     T+   ++FL
Sbjct: 535 LFD-KDENDKAEKLLREMITRGLLYSFL 561



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 90/227 (39%), Gaps = 20/227 (8%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  L K  +LE +   F+ +L     +   +Y V++  F + GL  +A  +   M
Sbjct: 457 TYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKM 516

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM--GKAG 354
           +   C  D  TYE++I SL      D A KL +EM  R    SF  + S   S     A 
Sbjct: 517 KDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAH 576

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIES-YAKAGKLDTALRLWD------------EM 401
            L+        +Q    + S      L+E  Y       + +R  D            + 
Sbjct: 577 FLNND-----SLQCTSSQESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDW 631

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
              G+  +   +T++I+     G  D ++++ + ME  G +P   TY
Sbjct: 632 SKQGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAVTY 678


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 172/405 (42%), Gaps = 7/405 (1%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           S  VP    Y ++     ++ + +  LS+ D M              YN +++ L  + K
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPD------VVTYNTILRSLCDSGK 219

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           L+ +     ++L  DC  D  +Y +L+          +A ++ + M    C+ D  TY +
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNV 279

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++  + K GRLD AIK   +M     +P+      ++ SM   GR   + K+  +M   G
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             PS   +  LI    + G L  A+ + ++M   G +PN   +  ++    K  K+D A+
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAI 399

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
                M   G  P   TY+ +L      G+V+ A+++ N ++S G  P L TY  ++  L
Sbjct: 400 EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459

Query: 491 AKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549
           AK      A K+L EM+      D ++ S ++    ++G VD A+++       G+R N 
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNA 519

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                +     K    + A   L   +    K     YT ++  L
Sbjct: 520 VTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGL 564



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 166/371 (44%), Gaps = 6/371 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    KA ++  +     ++  S    D  +YN ++    + G   +A E+ + M
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSP---DVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            + +C  D  TY ++I +  +   +  A+KL  EM++R   P    +  LV+ + K GRL
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++K   +M   G +P+   +  ++ S    G+   A +L  +M   GF P+   F ++
Sbjct: 291 DEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNIL 350

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    + G L  A+ I   M + G  P   +Y+ LL       ++D A++    M S G 
Sbjct: 351 INFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC 410

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALR 535
            P + TY  +LT L K   V+ A +IL ++ + G S V ++ + V+    K G    A++
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L  M +  ++ +      L     +    + A      +     + + V + S++  L 
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGL- 529

Query: 596 RCQDEQNERHL 606
            C+  Q +R +
Sbjct: 530 -CKTRQTDRAI 539



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 185/449 (41%), Gaps = 17/449 (3%)

Query: 209 ESRDFDGMLSLFDEMVHD-SSKNGISLFSAYNRV-----------IQYLAKADKLEMSYC 256
           ES   +G    FD +    S+ NG   FS+ N             ++ L +  +LE  + 
Sbjct: 64  ESSGLNGRAQKFDTLASGHSNSNGNGHFSSANSSFVLEDVESNNHLRQLVRTGELEEGFK 123

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
             + ++      D      L+  F   G   KA +I E +E      D  TY +MI    
Sbjct: 124 FLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYC 183

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           K+G ++ A+ +   M   +  P    + +++ S+  +G+L  +M+V   M      P   
Sbjct: 184 KAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y  LIE+  +   +  A++L DEMR  G  P+   + +++    K G+LD A+    DM
Sbjct: 241 TYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
             +G  P   T++ +L    S+G+   A KL   M   G  P + T+  L+  L ++ L+
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLL 360

Query: 497 DVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
             A  IL +M   G   + +S + +L  + K+  +D A+ +L  M S G   +      +
Sbjct: 361 GRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTM 420

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
             +  K+   E A  +L           L+ Y +V+  L +         L+  + A   
Sbjct: 421 LTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480

Query: 616 KAHAFLCGLFTGPEQRKQPVLSFVREFFH 644
           K          G   R+  V   ++ FFH
Sbjct: 481 KPDTITYSSLVGGLSREGKVDEAIK-FFH 508



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 125/249 (50%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++N+L+     KGL  +A +I E M K  C  +  +Y  ++    K  ++D AI+  + M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             R   P    + +++ ++ K G+++ ++++  ++   G  P    Y ++I+  AKAGK 
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A++L DEMR    +P+   ++ ++   ++ GK+D A+  F + ER G  P   T++ +
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSI 525

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +     + Q D A+     M + G +P  ++YT L+  LA   +   A ++L E+   G 
Sbjct: 526 MLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGL 585

Query: 512 SVDVSASDV 520
               SA  V
Sbjct: 586 MKRSSAEQV 594



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 118/240 (49%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I +L +   L  +    +K+    C+ ++ SYN L+  F  +    +A E  E M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D  TY  M+ +L K G+++ A+++  ++  +   P    + +++D + KAG+ 
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++K+  EM+    +P    Y SL+   ++ GK+D A++ + E    G RPN   F  I
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSI 525

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K+ + D A+     M   G  PT ++Y+ L+E  A  G    A++L N + + GL
Sbjct: 526 MLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 1/247 (0%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFK 259
           V+ F++L       G+L    +++    K+G    S +YN ++    K  K++ +    +
Sbjct: 344 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++   C  D  +YN ++T     G    A EI   +    CS    TY  +I  LAK+G
Sbjct: 404 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +   AIKL  EM+ ++ +P    ++SLV  + + G++D ++K + E +  G RP+A  + 
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFN 523

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           S++    K  + D A+     M   G +P    +T++IE  A  G    A+ +  ++   
Sbjct: 524 SIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNK 583

Query: 440 GFLPTPS 446
           G +   S
Sbjct: 584 GLMKRSS 590



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 120/297 (40%), Gaps = 44/297 (14%)

Query: 344 ASLVDSMGKAGR---LDTSMKVYMEMQGCGHRPSAPMYVSL--------IESYAKAGKLD 392
           AS V+S G  GR    DT    +    G GH  SA     L        +    + G+L+
Sbjct: 60  ASQVESSGLNGRAQKFDTLASGHSNSNGNGHFSSANSSFVLEDVESNNHLRQLVRTGELE 119

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
              +  + M   G  P+    T +I    + GK   A  I   +E +G +P   TY+ ++
Sbjct: 120 EGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMI 179

Query: 453 EMHASSGQVDSAMKLYNSMT-----------------SAGLR---------------PGL 480
             +  +G++++A+ + + M+                 S  L+               P +
Sbjct: 180 SGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDV 239

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRF 539
            TYT L+    +   V  A K+L EM+  G + DV   +VL+  I K+G +D A+++L  
Sbjct: 240 ITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLND 299

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           M SSG + N      +  S      +  A+ LL   +       +V +  ++  L R
Sbjct: 300 MPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 162/355 (45%), Gaps = 1/355 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    K   +E     F K+ + D   +  +Y VL+  F   GL     E+YE M
Sbjct: 188 VYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKM 247

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +      +  TY  MI      G+L+ A +LF EM+ER    +   + +L+  + +  R+
Sbjct: 248 KLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRV 307

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++   M+  G  P+   Y +LI+ Y   G LD A  L+++M+ +G  P+   + ++
Sbjct: 308 LEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNIL 367

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I   +++        +  +ME  G  P+  TY+ L++    S  ++ A ++Y+SM  AGL
Sbjct: 368 IAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGL 427

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALR 535
              +  Y  L+  L     +  A+K+   +  M     DV  + ++  Y K+GS   ALR
Sbjct: 428 VADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALR 487

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
            L+ MG +G+  N            K+  +  A+ LL+  +E   K  + ++  +
Sbjct: 488 LLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 542



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 168/358 (46%), Gaps = 4/358 (1%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + +N ++  L K++  E ++  F +    + K+D  S+ +++      G   K FE+   
Sbjct: 118 NTFNNLLILLIKSNFFEKAWRVFNET-KGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQ 176

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+   S +   Y  +I    K+G ++   +LF +M E +   +   +  L++   K G 
Sbjct: 177 MEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGL 236

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
               +++Y +M+  G  P+   Y S+I      GKL+ A  L+DEMR  G   N   +  
Sbjct: 237 KKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNT 296

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I    +  ++  A  +   M+R G  P   +Y+ L++ + S G +D A  L+N M S+G
Sbjct: 297 LIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 356

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
             P L+TY  L+   ++ K       ++ EM+  G S       +LM   ++  +++ A 
Sbjct: 357 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 416

Query: 535 RWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +    M  +G+  + +I   L    C+   + E++K L ++  E   K + V+Y +++
Sbjct: 417 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASK-LFKSLDEMHLKPNDVIYNTMI 473



 Score = 42.7 bits (99), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           +  ++  H  S   + A+   N M   GL PG +T+  LL LL K    + A ++  E K
Sbjct: 85  HEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETK 144

Query: 508 TMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
                +DV +  +++    + G +D     L  M   G+  N  +   L + C KN   E
Sbjct: 145 G-NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIE 203

Query: 567 SAKPL 571
             K L
Sbjct: 204 RGKQL 208


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 74  AIECYRLTREHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 129

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 130 ILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 189

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 190 GVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLA 249

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 250 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDG 309

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G    A K+   M S GL+P 
Sbjct: 310 CCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPD 369

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 370 ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 54  DLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 113

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 114 EEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 173

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 174 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTF 233

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 234 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSM 293

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    KDG +D A    + M     R ++ +   L     +      
Sbjct: 294 KGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVD 353

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 354 AEKMLREMLSVGLKPDARTYTMIINEFCKKGD 385



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 140/306 (45%), Gaps = 3/306 (0%)

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           I+E+  KG    D   +  +I +  +SG L  AI+ ++  +E  F   F+    +++ + 
Sbjct: 44  IFET--KGTQRSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLM 101

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K          Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+  
Sbjct: 102 KLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVV 161

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +  ++  + + G LD    + + M  +G  P   TYS L+       ++D A +L++ M
Sbjct: 162 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEM 221

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSV 530
              GL P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +
Sbjct: 222 LVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL 281

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
             A   +  M   G++ +      L + C K+   ++A    +  ++   ++D V+YT++
Sbjct: 282 KQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTAL 341

Query: 591 LAHLVR 596
           ++ L R
Sbjct: 342 ISGLCR 347



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 140/311 (45%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 90  FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFD 149

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 150 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 209

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P++  + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 210 KIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYN 269

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +D+A +    M   
Sbjct: 270 TLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQE 329

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHA 533
             R     YTAL++ L +      A K+L EM ++G   D  + + ++  + K G V   
Sbjct: 330 NTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKG 389

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 390 SKLLKEMQRDG 400



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 121/278 (43%), Gaps = 40/278 (14%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLDTA 394
           R    +F+ L+ +  ++G L  +++ Y   +   H+   P      ++E   K       
Sbjct: 52  RSDLYVFSGLITAYLESGFLRDAIECYRLTRE--HKFWVPFDTCRKVLEHLMKLKYFKLV 109

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              ++E+   G+  +   F +++    K G + IA S+F  + + G  P+  +Y+ L+  
Sbjct: 110 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNG 169

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +   G +D   +L ++M ++G++P + TY+ L+  L K   +D A ++  EM   G   +
Sbjct: 170 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPN 229

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V+ + ++  + K+G VD A+                I +Q+        L +S  P   
Sbjct: 230 SVTFTTLIDGHCKNGRVDLAME---------------IYKQM--------LSQSLSP--- 263

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
                    DL+ Y +++  L +  D +   HL+  +S
Sbjct: 264 ---------DLITYNTLIYGLCKKGDLKQAHHLIDEMS 292


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 173/370 (46%), Gaps = 5/370 (1%)

Query: 177 SDTSLSLFRWAK-RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
            DT L+     K  Q    PG   Y  + D L +++  D  L+LF EM     +  +  +
Sbjct: 235 GDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S+   +I  L    +   +      +++     D  +++ L+  F+ +G   +A ++Y+ 
Sbjct: 295 SS---LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDE 351

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M K        TY  +I       RLD A ++F+ M  ++  P    +++L+    KA R
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKR 411

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D  M+++ EM   G   +   Y +LI+   +AG  D A  ++ EM   G  PN   +  
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++   K+GKL+ AM +F  ++R+   PT  TY+ ++E    +G+V+    L+ +++  G
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           ++P +  Y  +++   ++   + A  +  EMK  G   +    + L+   ++DG  + + 
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591

Query: 535 RWLRFMGSSG 544
             ++ M S G
Sbjct: 592 ELIKEMRSCG 601



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 162/361 (44%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I  L   +K   +     +++   C+ D  +Y V++     +G    AF +   M
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKM 247

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+G+       Y  +I  L K+  +D A+ LF+EM+ +  RP+   ++SL+  +   GR 
Sbjct: 248 EQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++  +M      P    + +LI+++ K GKL  A +L+DEM      P+   ++ +
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I       +LD A  +F  M      P   +YS L++    + +VD  M+L+  M+  GL
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
                TYT L+  L +    D+A +I  EM + G   ++   + L+  + K+G ++ A+ 
Sbjct: 428 VGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
              ++  S +    +    + E   K    E    L         K D+V Y ++++   
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547

Query: 596 R 596
           R
Sbjct: 548 R 548



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 150/322 (46%), Gaps = 5/322 (1%)

Query: 269 DTQSYNVLM-TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
           +T ++N L+  LFL+     +A  + + M    C  D  TY +++  L K G  D A  L
Sbjct: 185 NTVTFNTLIHGLFLHNKAS-EAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFIL 243

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             +M++    P   I+ +++D + K   +D ++ ++ EM+  G RP+   Y SLI     
Sbjct: 244 LNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN 303

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            G+   A RL  +M      P+   F+ +I++  K GKL  A  ++ +M +    P+  T
Sbjct: 304 YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVT 363

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           YS L+       ++D A +++  M S    P + +Y+ L+    K K VD   ++  EM 
Sbjct: 364 YSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMS 423

Query: 508 TMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G   + V+ + ++    + G  D A    + M S G+  N      L +   KN   E
Sbjct: 424 QRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 483

Query: 567 SAKPLLETYVESAAKVDLVLYT 588
            A  + E Y++  +K++  +YT
Sbjct: 484 KAMVVFE-YLQR-SKMEPTIYT 503



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 132/306 (43%), Gaps = 2/306 (0%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++ ++AK  + D  I L ++M+      +   ++ L++   +  +L  ++ V  +M   G
Sbjct: 87  LLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLG 146

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           + P+     SL+  Y  + ++  A+ L D+M + G++PN   F  +I       K   A+
Sbjct: 147 YEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAV 206

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           ++   M   G  P   TY  ++      G  D A  L N M    L PG+  YT ++  L
Sbjct: 207 ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGL 266

Query: 491 AKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549
            K K +D A  +  EM+T G   + V+ S ++      G    A R L  M    I  + 
Sbjct: 267 CKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609
           F    L ++ +K      A+ L +  V+ +    +V Y+S++       D  +E   M  
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM-HDRLDEAKQMFE 385

Query: 610 LSATKH 615
              +KH
Sbjct: 386 FMVSKH 391



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 136/294 (46%), Gaps = 3/294 (1%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY ++I    +  +L  A+ +  +M +  + P+    +SL++    + R+  ++ +  +M
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G++P+   + +LI       K   A+ L D M   G +P+   + +++    K G  
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           D+A  +   ME+    P    Y+ +++    +  +D A+ L+  M + G+RP + TY++L
Sbjct: 238 DLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSL 297

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           ++ L        A+++L +M     + DV + S ++  ++K+G +  A +    M    I
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357

Query: 546 RTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
             +      L    CM + L E AK + E  V      D+V Y++++    + +
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDE-AKQMFEFMVSKHCFPDVVSYSTLIKGFCKAK 410



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 129/280 (46%), Gaps = 5/280 (1%)

Query: 320 RLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           +LD A+ LF EM K R F PS   F+ L+ ++ K  + D  + +  +MQ  G   +   Y
Sbjct: 61  KLDDAVALFGEMVKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTY 119

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI  + +  +L  AL +  +M   G+ PN    + ++  +  S ++  A+++   M  
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G+ P   T++ L+       +   A+ L + M + G +P L TY  ++  L KR   D+
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239

Query: 499 AAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A  +L +M+       V   + ++    K+  +D AL   + M + GIR N      L  
Sbjct: 240 AFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLI- 298

Query: 558 SCMKN-ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           SC+ N   +  A  LL   +E     D+  +++++   V+
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 148/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  +   ++VP D C  +L + L + + F  +   + E++       +  F   N
Sbjct: 85  AIEFFRLTREHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYKEILECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM+ ++  G   + F +  +M   
Sbjct: 141 ILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y ++   G  P    Y +LI    K G L  A  L DEM +   +P+   +T +I+ 
Sbjct: 261 MEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
             TYT ++    K+  V   +K+L EM   G+
Sbjct: 381 NGTYTMIINEFCKKGDVKTGSKLLKEMXRDGH 412



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 149/348 (42%), Gaps = 1/348 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E +    + +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   + +L+  Y + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  + S G  P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
                D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           A+ +L   +    K D   YT ++    +  D +    L+  +    H
Sbjct: 365 AEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGH 412



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 145/319 (45%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG +  AI+ F+  +E  F   F+    +++ + K     
Sbjct: 59  KGTQRSDIYVFSGLITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G++  A  ++D +   G RP+   F  ++
Sbjct: 119 LVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A +L+N M   GL 
Sbjct: 179 SGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  ++ + G+S D+   + L+  + K G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M    ++ +      L +   K    E+A    +  ++   ++D V YT++++ L  
Sbjct: 299 IDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL-- 356

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 357 CQEGRSVDAEKMLRGMLSV 375



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 36/221 (16%)

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
            + E+   G+  +   F +++    K G++ +A S+F  + + G  P+  +++ L+  + 
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYI 182

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-V 515
             G +D   +L ++M ++G++P + TY+ L+  L K   +D A ++  EM   G   + V
Sbjct: 183 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGV 242

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           + + ++  + K+G VD A+                I +QL        L +   P     
Sbjct: 243 TFTTLIDGHCKNGRVDLAME---------------IYKQL--------LSQGFSP----- 274

Query: 576 VESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616
                  DL+ Y +++  L +  D +  R L+  +S  + K
Sbjct: 275 -------DLITYNTLIFGLCKKGDLKQARDLIDEMSMKELK 308


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 148/310 (47%), Gaps = 3/310 (0%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           ++G   LF+EMV +     +  F   N +I  L KA K+E +    K ++      DT +
Sbjct: 289 WEGAKGLFNEMVDEGVHPNVVTF---NVLIDALCKAGKMEEANHLLKLMIQRGESPDTFT 345

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN L+  F  +G    A +++ SME      D  +Y ++I    KSGR+  A KL++EM 
Sbjct: 346 YNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMM 405

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
            +   P+   + +L+  + + G++  +  ++ EM+     P +  Y  L++   K   L 
Sbjct: 406 CKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLS 465

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A+ L+  +    F+P+  +F  +I+   K+ K++IA  +F  +   G  P   TY+ ++
Sbjct: 466 EAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMI 525

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
                SGQ+++A  L+  M   G  P L T+  L+    +   +    ++L EM    +S
Sbjct: 526 HGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFS 585

Query: 513 VDVSASDVLM 522
            D S   +++
Sbjct: 586 PDASTISIVV 595



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 156/330 (47%), Gaps = 7/330 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEM 253
           P   CY  + D L +    DG++    E+  +    GIS    AY+ +I  +    + E 
Sbjct: 236 PNLVCYCTIIDSLCK----DGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEG 291

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMI 312
           +   F +++D     +  ++NVL+      G   +A  + + M ++GE S D  TY  +I
Sbjct: 292 AKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGE-SPDTFTYNTLI 350

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
                 GR+D A  LF  M+ +        +  L++   K+GR+  + K+Y EM      
Sbjct: 351 DGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIM 410

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y +L+    + GK+  A  L+ EM++    P    + ++++   K+  L  AM +
Sbjct: 411 PTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMEL 470

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  +E   F P+   ++CL++    + +++ A +L+N ++  GL P + TYT ++  L K
Sbjct: 471 FHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCK 530

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
              ++ A  + L M+  G + ++   + LM
Sbjct: 531 SGQLENAKDLFLGMEEKGCAPNLVTFNTLM 560



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 105/453 (23%), Positives = 180/453 (39%), Gaps = 19/453 (4%)

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++  F  ++D        S+N L+         +    +Y+ M     + D  T  ++I 
Sbjct: 76  AFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILIN 135

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
                 ++D  + +  EM  R   P+   F SLV  +    R+  +  +  +M   G+RP
Sbjct: 136 CYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRP 195

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEM--RIAGF----RPNFGLFTMIIESHAKSGKLD 427
           +   Y +L+      G    A++L +EM     GF    +PN   +  II+S  K G +D
Sbjct: 196 NVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLID 255

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
               +F +M+  G  P    YS ++     +G+ + A  L+N M   G+ P + T+  L+
Sbjct: 256 KGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLI 315

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR 546
             L K   ++ A  +L  M   G S D    + L+  +  +G +D A      M S GI 
Sbjct: 316 DALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIE 375

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR---CQDEQNE 603
           T+      L     K+     AK L    +       ++ Y ++L  L R    +D  N 
Sbjct: 376 TDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNL 435

Query: 604 RHLMAILSATKHKA--HAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNV 661
              M +   T      +  L GL       K   LS   E FH ++    + + + F N 
Sbjct: 436 FGEMKVHDLTPESCTYNILLDGLC------KNNHLSEAMELFHYLENHDFQPSIQIF-NC 488

Query: 662 LLNYLVLMGQINRARCVWKVAYENKLFPKAIVF 694
           L++ L    +I  AR ++       L P  I +
Sbjct: 489 LIDGLCKARKIEIARELFNRLSHEGLEPNVITY 521



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 118/297 (39%), Gaps = 9/297 (3%)

Query: 304 DGSTYELMIPSLAKSGRL--DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           D    E  + S  KSG +    A  +F  + +    P  + F +L+ ++ K  R    + 
Sbjct: 54  DRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVIS 113

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           +Y  M   G  P       LI  Y    K+D  L +  EM   G  PN   FT +++   
Sbjct: 114 LYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLC 173

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG------ 475
              ++  A  +   M R G+ P   TY  LL     +G    A+KL+  M +        
Sbjct: 174 LGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVT 233

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHAL 534
           ++P L  Y  ++  L K  L+D   ++ LEMK  G S DV A S ++      G  + A 
Sbjct: 234 IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAK 293

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                M   G+  N      L ++  K    E A  LL+  ++     D   Y +++
Sbjct: 294 GLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLI 350


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 162/348 (46%), Gaps = 1/348 (0%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K  T +YN ++ +F   G+  +A  I + ME   C  D  TY  ++ +  ++G  D    
Sbjct: 340 KPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAA 399

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           +   M  +   P+   + +++++ GKAG  D +++V+ +M+  G  P+   Y +++    
Sbjct: 400 VIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLG 459

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K  + +  +++  +M++ G  P+   +  ++    + GK      +  +M+  GF P   
Sbjct: 460 KRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKE 519

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           T++ L+  +   G      K+Y  M +AG  P ++TY ALL  LA+R     A  ++L+M
Sbjct: 520 TFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDM 579

Query: 507 KTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
           +  G+   + S S +L  Y K G+V    +    +    +  +  ++R L  +  K    
Sbjct: 580 RKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQL 639

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
           +  +        +  K+D+V+  S+L+  VR Q  +    ++ ++  +
Sbjct: 640 KGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVS 687



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 139/315 (44%), Gaps = 37/315 (11%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K+D QS   ++ +   +     A ++++ +   E SLD      ++ + A++G+   AI+
Sbjct: 199 KVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIE 258

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGR------------------------------- 355
           +F++MKE    P+   +  ++D  GK GR                               
Sbjct: 259 IFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISAC 318

Query: 356 -----LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
                LD + + + +++  G++P    Y S+++ + KAG    AL +  EM      P+ 
Sbjct: 319 GREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDA 378

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +  ++ ++ ++G  D   ++   M   G +P   TY+ ++  +  +G  D A++++  
Sbjct: 379 ITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQ 438

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGS 529
           M   G  P + TY  +L LL KR   +   KIL +MK  G   D ++ + +L V  + G 
Sbjct: 439 MKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGK 498

Query: 530 VDHALRWLRFMGSSG 544
                + LR M + G
Sbjct: 499 QKFVSQVLREMKNCG 513



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 83/445 (18%), Positives = 176/445 (39%), Gaps = 47/445 (10%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE- 252
           +P    Y  + +   ++ D D  L +F +M        +     YN V+  L K  + E 
Sbjct: 410 MPNAITYTTVINAYGKAGDADKALEVFGQM---KELGCVPNVCTYNNVLVLLGKRSRSED 466

Query: 253 -MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
            +   C  K+  + C  D  ++N ++ +   KG      ++   M+      D  T+  +
Sbjct: 467 MIKILCDMKL--NGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTL 524

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I +  + G      K++ EM    F P    + +L++++ + G    +  V ++M+  G 
Sbjct: 525 ISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGF 584

Query: 372 RPSAPMYVSLIESYAKAG-----------------------------------KLDTALR 396
           +P+   Y  L+  Y+KAG                                   +L    R
Sbjct: 585 KPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMER 644

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
            + +++  G++ +  +   ++    ++ KL+ A  +   +  +G  P   TY+ L++++A
Sbjct: 645 AFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYA 704

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDV 515
             G    A ++   + ++G+ P + +Y  ++    K+ LV  A +IL EM   G     +
Sbjct: 705 RVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPI 764

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           + +  +  Y  +G    A   +R+M   G   N    + + +  +K   ++ A      +
Sbjct: 765 TFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYIKAKKHKEAM----DF 820

Query: 576 VESAAKVDLVLYTSVLAHLVRCQDE 600
           V    ++D+      L  L  C  E
Sbjct: 821 VSKIKEIDISFDDQSLKKLASCIRE 845



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 141/294 (47%), Gaps = 2/294 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN L+     +G    A  +   M K     + ++Y L++   +K+G +    K+  E+
Sbjct: 555 TYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEI 614

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            + +  PS+ +  +LV +  K  +L    + + ++Q  G++    +  S++  + +  KL
Sbjct: 615 YDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKL 674

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A  + D + ++G +PN   +  +I+ +A+ G    A  +  D++ +G  P   +Y+ +
Sbjct: 675 EKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTV 734

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG- 510
           ++     G V  A+++ + MT+ G++P   T+   ++  A   L   A +++  M   G 
Sbjct: 735 IKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGC 794

Query: 511 YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
              +++   V+  YIK      A+ ++  +    I  ++  +++L  SC++ +L
Sbjct: 795 MPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDISFDDQSLKKL-ASCIRESL 847


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/414 (21%), Positives = 188/414 (45%), Gaps = 9/414 (2%)

Query: 162 PKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFD 221
           P +  +  AL  +   D +L +FR  +     +P       + D L ++R       LFD
Sbjct: 120 PALGVLVIALSQMGLLDEALYVFRRLRT----LPALPACNAVLDGLVKARRPGCAWELFD 175

Query: 222 EMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           EM+    +  +     YN +I        +  +   + +++      +  +Y  ++    
Sbjct: 176 EMLR---RGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALC 232

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
            +G    A  ++++M++     +  TY +++    +   +++A+ L+QE+ +    P+  
Sbjct: 233 EEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAV 292

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
           IF +L+D   KA R   +  +++EM   G  P+ P+Y SL++   ++G    AL L+ EM
Sbjct: 293 IFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEM 352

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G  P+    ++++      G++ +A      ++  G     + Y+ L++ +   G +
Sbjct: 353 TRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNL 412

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           + A+     MT  G+ P + +Y++L+   +KR  + +A  I  EM   G   +V     L
Sbjct: 413 EEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTAL 472

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLE 573
           +  + K+G +D A R  + M  +GI  N   V  L +  C +N + E+ + ++E
Sbjct: 473 IHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVME 526



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 126/288 (43%), Gaps = 4/288 (1%)

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           +++ +L++ G LD A+ +F+ ++     P+ N   +++D + KA R   + +++ EM   
Sbjct: 124 VLVIALSQMGLLDEALYVFRRLRTLPALPACN---AVLDGLVKARRPGCAWELFDEMLRR 180

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  PS   Y +LI +    G +  A  +WD+M      PN   +T +I +  + G +  A
Sbjct: 181 GLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDA 240

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             +F  M+ AG  P   TY+ L+  H     V+SA+ LY  +  +GL P    +T L+  
Sbjct: 241 ERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDG 300

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTN 548
             K K    A  + LEM   G +  V   + LM    + G+   AL   + M   G+  +
Sbjct: 301 FCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPD 360

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            F    +            A   L+   E    ++   Y +++    R
Sbjct: 361 EFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCR 408



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 146/331 (44%), Gaps = 23/331 (6%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS- 233
           +D ++++ L++   + S   P    +  L D   +++ F     +F EM     + G++ 
Sbjct: 270 DDVNSAVVLYQELLK-SGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEM----PRFGVAP 324

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
               YN ++    ++   + +   ++++       D  + ++++    + G  + A    
Sbjct: 325 TVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFL 384

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           + +++   +L+ + Y  +I    + G L+ A+     M E    P+   ++SL+D   K 
Sbjct: 385 QGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKR 444

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G++  +M +Y EM   G  P+   Y +LI  +AK G +D A RL  EM   G  PN    
Sbjct: 445 GKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITV 504

Query: 414 TMIIESHAKSGKLDIAM---------------SIFTD--MERAGFLPTPSTYSCLLEMHA 456
           +++++   +  ++  A+               S+F++  +E    +P    Y  L+    
Sbjct: 505 SVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLY 564

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             GQ   A KL++ M  +G+ P   TYT L+
Sbjct: 565 LDGQHCEAGKLFSYMRKSGMIPDSFTYTLLI 595



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 18/254 (7%)

Query: 215 GMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           G + + D  +    ++G++L  +AYN +I    +   LE +     ++ +   + +  SY
Sbjct: 375 GQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSY 434

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + L+     +G    A  IY  M       +  TY  +I   AK+G +DAA +L +EM E
Sbjct: 435 SSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIE 494

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG--CG--HR-------------PSAP 376
               P+    + LVD + +  R+  +++  ME  G  C   H              P++ 
Sbjct: 495 NGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSV 554

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y++LI      G+   A +L+  MR +G  P+   +T++I      G +  AM ++ DM
Sbjct: 555 IYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADM 614

Query: 437 ERAGFLPTPSTYSC 450
            + G  PT     C
Sbjct: 615 MKIGVKPTRYKIEC 628


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 88  AIECYRLTREHKLWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 143

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 144 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLAS 203

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 204 GVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFA 263

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y  M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 264 MEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 323

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 324 CCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPD 383

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G++  V   +VLM
Sbjct: 384 TGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 426



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 1/348 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 68  DIYVFSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 127

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 128 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 187

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G  P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 188 GHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTF 247

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 248 TTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSM 307

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D  + + ++    K+G +D A    + M    IR ++     L     +      
Sbjct: 308 KGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVD 367

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           A+ +L   +    K D   YT ++    +  D      L+  +    H
Sbjct: 368 AEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 415



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 137/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 104 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 163

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M      P    ++ L++ + K  
Sbjct: 164 AITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKES 223

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K G++D A+ ++  M      P+   + 
Sbjct: 224 KMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYN 283

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +D+A +    M   
Sbjct: 284 TLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQE 343

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     Y AL++ L +      A K+L EM ++G   D     +++  + K G V   
Sbjct: 344 NIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKG 403

Query: 534 LRWLRFMGSSG 544
            + L+ M  +G
Sbjct: 404 SKLLKEMQRNG 414



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 141/319 (44%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  ++G L  AI+ ++  +E      F+    +++ + K     
Sbjct: 62  KGTQRSDIYVFSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFK 121

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 122 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 181

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G LP   TYS L+       ++D A +L++ M   GL 
Sbjct: 182 NGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLI 241

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD A +I   M +     D+   + L+  + K G +  A   
Sbjct: 242 PNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 301

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ + F    L + C K    ++A    +  ++   ++D V Y ++++ L  
Sbjct: 302 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGL-- 359

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 360 CQEGRSVDAEKMLREMLSV 378



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/287 (19%), Positives = 118/287 (41%), Gaps = 40/287 (13%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLDTA 394
           R    +F+ L+ +  + G L  +++ Y   +   H+   P      ++E   K       
Sbjct: 66  RSDIYVFSGLITAYLETGFLRDAIECYRLTRE--HKLWVPFDTCRKVLEHLMKLKYFKLV 123

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              ++E+   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+  
Sbjct: 124 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 183

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +   G +D   +L ++M ++G+ P + TY+ L+  L K   +D A ++  EM   G   +
Sbjct: 184 YIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPN 243

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V+ + ++  + K+G VD A+   + M                       L +S  P   
Sbjct: 244 GVTFTTLIDGHCKNGRVDFAMEIYKRM-----------------------LSQSLLP--- 277

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF 620
                    DL+ Y +++  L +  D +    L+  +S    K   F
Sbjct: 278 ---------DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 315


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 6/343 (1%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE--CSLDGSTYELMIPSLAKSGRLDA 323
           C  D  SYN+L+    N+G   +A ++   M +G   CS D   Y  +I    K G ++ 
Sbjct: 180 CVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNK 239

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A  LF+EM +R   P    ++S+V ++ KA  +D +     +M   G  P    Y +LI 
Sbjct: 240 ACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIY 299

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            Y+  G+   A+R++ EMR     P+      ++ S  K GK+  A  +F  M   G  P
Sbjct: 300 GYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNP 359

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              +Y+ +L  +A+ G +     L++ M   G+ P + T+  L+   A   ++D A  I 
Sbjct: 360 DVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIF 419

Query: 504 LEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            EM+  G     V+   V+    + G +D A+     M   G+  + +    L +    +
Sbjct: 420 NEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTH 479

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLV---RCQDEQN 602
                AK L+   + +  ++D+V + S++ +L    R  D QN
Sbjct: 480 GSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQN 522



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 173/390 (44%), Gaps = 10/390 (2%)

Query: 216 MLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           M  LFD M+ D    GI+ +   +N +I+  A    L+ +   F ++ D   K    +Y 
Sbjct: 380 MTDLFDLMLGD----GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYM 435

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            ++      G    A E +  M       D   Y  +I      G L  A +L  E+   
Sbjct: 436 TVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN 495

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
             R     F S+++++ K GR+  +  ++      G  P A +Y  L++ Y   GK++ A
Sbjct: 496 GMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKA 555

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           LR++D M  AG  PN   +  ++  + K G++D  +S+F +M + G  P+   Y+ +++ 
Sbjct: 556 LRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 615

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +G+   A   ++ MT +G+     TY+ +L  L K +  D A  +  E++ M   +D
Sbjct: 616 LFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKID 675

Query: 515 VSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           +   + ++  + +   V+ A      +  SG+         +  + +K  L E A+ +  
Sbjct: 676 IITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFS 735

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
           +   +  + D    + +L H+VR   ++NE
Sbjct: 736 SMQNAGCEPD----SRLLNHVVRELLKKNE 761



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 171/381 (44%), Gaps = 11/381 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           A N ++  L K  K++ +   F  +       D  SY +++  +  KG      ++++ M
Sbjct: 328 ALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLM 387

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                +    T+ ++I + A  G LD A+ +F EM++   +P    + +++ ++ + G++
Sbjct: 388 LGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKM 447

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +M+ + +M   G  P    Y  LI+ +   G L  A  L  E+   G R +   F  I
Sbjct: 448 DDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSI 507

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I +  K G++  A +IF      G  P    Y+ L++ +   G+++ A++++++M SAG+
Sbjct: 508 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGI 567

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG------SV 530
            P +  Y  L+    K   +D    +  EM   G    +  S +L   I DG      +V
Sbjct: 568 EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKG----IKPSTILYNIIIDGLFEAGRTV 623

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
              +++   M  SGI  N      +     KN  ++ A  L +       K+D++   ++
Sbjct: 624 PAKVKFHE-MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTM 682

Query: 591 LAHLVRCQDEQNERHLMAILS 611
           +A + + +  +  + L A +S
Sbjct: 683 IAGMFQTRRVEEAKDLFASIS 703



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 170/397 (42%), Gaps = 6/397 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D   +  D +    LF EMV    + GI      Y+ V+  L KA  ++ +    
Sbjct: 224 YNTVIDGFFKEGDVNKACDLFKEMV----QRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +++++     D  +YN L+  + + G   +A  +++ M +     D      ++ SL K 
Sbjct: 280 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKY 339

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G++  A  +F  M  +   P    +  +++     G L     ++  M G G  P    +
Sbjct: 340 GKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTF 399

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI++YA  G LD A+ +++EMR  G +P+   +  +I +  + GK+D AM  F  M  
Sbjct: 400 NVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMID 459

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G +P    Y CL++   + G +  A +L + + + G+R  +  + +++  L K   V  
Sbjct: 460 QGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMD 519

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A  I      +G   D    ++LM  Y   G ++ ALR    M S+GI  N      L  
Sbjct: 520 AQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVN 579

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
              K    +    L    ++   K   +LY  ++  L
Sbjct: 580 GYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 145/318 (45%), Gaps = 2/318 (0%)

Query: 222 EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           E++ +   NG+ L    +  +I  L K  ++  +   F   ++     D   YN+LM  +
Sbjct: 487 ELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGY 546

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   KA  ++++M       +   Y  ++    K GR+D  + LF+EM ++  +PS 
Sbjct: 547 CLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 606

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
            ++  ++D + +AGR   +   + EM   G   +   Y  ++    K    D A+ L+ E
Sbjct: 607 ILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKE 666

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           +R    + +      +I    ++ +++ A  +F  + R+G +P   TYS ++      G 
Sbjct: 667 LRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGL 726

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASD 519
           V+ A  +++SM +AG  P       ++  L K+  +  A   L ++    +S++ ++A  
Sbjct: 727 VEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAML 786

Query: 520 VLMVYIKDGSVDHALRWL 537
           ++ ++   G+    +R+L
Sbjct: 787 LVDLFSSKGTCREQIRFL 804


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 173/402 (43%), Gaps = 6/402 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           Y +L D L + R+ D    L  EMV     +GI++    Y+  I  ++K   +E +   F
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVS----HGINIKPYMYDCCICVMSKEGVMEKAKALF 370

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             ++ S      Q+Y  L+  +  +    + +E+   M+K    +   TY  ++  +  S
Sbjct: 371 DGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSS 430

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G LD A  + +EM     RP+  I+ +L+ +  +  R   +M+V  EM+  G  P    Y
Sbjct: 431 GDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCY 490

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SLI   +KA ++D A     EM   G +PN   +   I  + ++ +   A     +M  
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G LP     + L+  +   G+V  A   Y SM   G+     TYT L+  L K   VD 
Sbjct: 551 CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A +I  EM+  G + DV +  VL+  + K G++  A      M   G+  N  I   L  
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              ++   E AK LL+         + V Y +++    +  D
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 180/421 (42%), Gaps = 25/421 (5%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI----SLFSAYNRVIQY 244
           ++    P   CY  L   L++++  D   S   EMV +  K       +  S Y    ++
Sbjct: 479 KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEF 538

Query: 245 LAKADKL--EMSYCCF--KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
            A ADK   EM  C     KVL +           L+  +  KG   +A   Y SM    
Sbjct: 539 -ASADKYVKEMRECGVLPNKVLCTG----------LINEYCKKGKVIEACSAYRSMVDQG 587

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              D  TY +++  L K+ ++D A ++F+EM+ +   P    +  L++   K G +  + 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            ++ EM   G  P+  +Y  L+  + ++G+++ A  L DEM + G  PN   +  II+ +
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            KSG L  A  +F +M+  G +P    Y+ L++       V+ A+ ++ +    G     
Sbjct: 708 CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASST 766

Query: 481 STYTALLTLLAKRKLVDVAAKILLEM-----KTMGYSVDVSASDVLMVYIKDGSVDHALR 535
           + + AL+  + K    ++  ++L  +        G   DV+ + ++    K+G+++ A  
Sbjct: 767 APFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKE 826

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M ++ +         L     K        P+ +  + +  + D ++Y+ ++   +
Sbjct: 827 LFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFL 886

Query: 596 R 596
           +
Sbjct: 887 K 887



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 114/534 (21%), Positives = 220/534 (41%), Gaps = 75/534 (14%)

Query: 132 ASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQS 191
           + A A+I  ++ +  W   L +    ++  P++V      K ++D    LS F W   Q 
Sbjct: 32  SDASAEIAGILKQENWRDTLVSSNLSIEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQK 91

Query: 192 W---------YVPGDECYVMLFD----------------------VLNESRDF-----DG 215
                     ++  D C    F+                      ++  S++F     DG
Sbjct: 92  VTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVAEVWSSIVRCSQEFVGKSDDG 151

Query: 216 ML--SLFD-----EMVHD-----SSKNGISLFSAYNR---VIQYLAKADKLEMSYCCFKK 260
           +L   LFD     E + +     SS  G+ L    +R   ++  L + ++L++ +  +K 
Sbjct: 152 VLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKG 211

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK----GECSLDGS---------- 306
           +++ +   D ++Y++L+      G      ++    EK       ++DG+          
Sbjct: 212 MVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICK 271

Query: 307 -------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
                  TY+++I  L K  RL+ A  L  EM         + ++ L+D + K    D +
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             +  EM   G      MY   I   +K G ++ A  L+D M  +G  P    +  +IE 
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEG 391

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + +   +     +  +M++   + +P TY  +++   SSG +D A  +   M ++G RP 
Sbjct: 392 YCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN 451

Query: 480 LSTYTALL-TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
           +  YT L+ T L   +  D A ++L EMK  G + D+   + L++ + K   +D A  +L
Sbjct: 452 VVIYTTLIKTFLQNSRFGD-AMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             M  +G++ N F         ++ + + SA   ++   E     + VL T ++
Sbjct: 511 VEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLI 564



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 146/321 (45%), Gaps = 15/321 (4%)

Query: 194 VPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADK 250
           + GD + Y +L + L ++   D    +F EM       GI+  +FS Y  +I   +K   
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREM----RGKGIAPDVFS-YGVLINGFSKLGN 642

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           ++ +   F ++++     +   YN+L+  F   G   KA E+ + M       +  TY  
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY-MEMQGC 369
           +I    KSG L  A +LF EMK +   P   ++ +LVD   +   ++ ++ ++    +GC
Sbjct: 703 IIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGC 762

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF----RPNFGLFTMIIESHAKSGK 425
               +AP + +LI    K GK +    + + +    F    +PN   + ++I+   K G 
Sbjct: 763 AS-STAP-FNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGN 820

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           L+ A  +F  M+ A  +PT  TY+ LL  +   G+      +++   +AG+ P    Y+ 
Sbjct: 821 LEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSV 880

Query: 486 LLTLLAKRKLVDVAAKILLEM 506
           ++    K  +   A  ++ +M
Sbjct: 881 IINAFLKEGMTTKALVLVDQM 901



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 105/262 (40%), Gaps = 13/262 (4%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  + D   +S D      LFDEM     K  +     Y  ++    + + +E +
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEM---KLKGLVPDSFVYTTLVDGCCRLNDVERA 751

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS----TYEL 310
              F       C   T  +N L+      G      E+   +  G     G     TY +
Sbjct: 752 ITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNI 810

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           MI  L K G L+AA +LF +M+  N  P+   + SL++   K GR      V+ E    G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA-----GFRPNFGLFTMIIESHAKSGK 425
             P   MY  +I ++ K G    AL L D+M        G + +      ++   AK G+
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGE 930

Query: 426 LDIAMSIFTDMERAGFLPTPST 447
           +++A  +  +M R  ++P  +T
Sbjct: 931 MEVAEKVMENMVRLQYIPDSAT 952



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/353 (20%), Positives = 137/353 (38%), Gaps = 51/353 (14%)

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
           F   +S +  E  LD  ++  +   L   G  + A+ + + M ERN+ P   +++S+V  
Sbjct: 84  FNWVDSQKVTEQKLD--SFSFLALDLCNFGSFEKALSVVERMIERNW-PVAEVWSSIVRC 140

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
                            +  G      ++  L + Y     ++ A+ ++         P 
Sbjct: 141 ---------------SQEFVGKSDDGVLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPR 185

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG---------- 459
                +++++  +  +LD+   ++  M     +    TY  L+  H  +G          
Sbjct: 186 LSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLF 245

Query: 460 -----------QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
                       VD A+KL  SM   GL P   TY  L+  L K K ++ A  +L+EM +
Sbjct: 246 KTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDS 305

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM----KNA 563
           +G S+D     +L+   +K  + D A   +  M S GI    +    +++ C+    K  
Sbjct: 306 LGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPY----MYDCCICVMSKEG 361

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616
           + E AK L +  + S        Y S++    R   E+N R    +L   K +
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIEGYCR---EKNVRQGYELLVEMKKR 411


>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 484

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/479 (22%), Positives = 195/479 (40%), Gaps = 43/479 (8%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSAKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSL----------FDE-----MVHDSSKNGI-----------------SLFSAYNRVIQY 244
             +          +DE     M+    K GI                     +YN + + 
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKA 124

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
           + +  +  M+   F K+L    +    ++NV++  F   G    A   +E M+  E S D
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPARHTFNVMIWGFFLSGKVETANRFFEDMKSREISPD 184

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  MI    +  +++ A K F EMK RN  P+   + +L+       ++D ++++  
Sbjct: 185 VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVE 244

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP-NFGLFTMIIESHAKS 423
           EM+G G +P+A  Y +L+     AGK+  A  +  EM      P +  +F  +I S   S
Sbjct: 245 EMKGFGIKPNAITYSTLLPGLCNAGKMIEARSILKEMMDKYLAPTDNSIFMRLISSQCNS 304

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LRPGL- 480
           G LD A  +   M R         Y  L+E    +GQ D A+KL + +      LRP   
Sbjct: 305 GNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQST 364

Query: 481 -----STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALR 535
                S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D A  
Sbjct: 365 LHLEPSAYNPMIEYLCNNGQAAKAEALVRQLLKLGVQDPTALNTLIRGHSQEGSPDSAFE 424

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+  L
Sbjct: 425 LLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVMESL 483


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 149/331 (45%), Gaps = 4/331 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           + TYT ++    K+  V   +K+L EM+  G
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +     RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G +P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418


>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 581

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 170/396 (42%), Gaps = 42/396 (10%)

Query: 172 KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           ++ ND + + + F WA RQ  Y      Y  +  +L + R FD   +L DEM     K G
Sbjct: 136 RIRNDWEAAFTFFLWAGRQLGYSHSVREYHAMISILGKMRKFDTAWALIDEM--RGVKTG 193

Query: 232 ISLFSAYNRVI---QYLAKAD------------------------KLEMSYCCFKKVLDS 264
           ISL +    +I   +Y A  D                         L  + C +K V D+
Sbjct: 194 ISLVTPQTLLIMIRKYCAVHDVGRAINTFYAHKRFKFDLGIDEFQSLLSALCRYKNVQDA 253

Query: 265 D----CKID-----TQSYNVLMTLFLNK-GLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +    C  D     T+S+N+++  + N  G P +A  I+  M K     D  +Y  +I  
Sbjct: 254 EHLMFCNKDVFPFNTKSFNIVLNGWCNVIGSPREADRIWREMCKRRIHYDVVSYASIISC 313

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            +K+G L    KL+ +MKE    P   I+ S++ ++ K   +  ++ +   M+  G  P+
Sbjct: 314 YSKAGNLYKVFKLYNQMKEVGIEPDRKIYNSVIFALAKGRHVSEAINLMKTMEEKGIAPN 373

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y SLI+   +A K+D A  L+DEM   G  P    +     S  ++G  +   ++  
Sbjct: 374 TVTYNSLIKPLCRARKIDEARGLFDEMLQHGHSPTIRTYHAFFRS-LRTG--EEVFALLE 430

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M + G  PT  TY  L+       Q D   KL+N ++  GL P  S+Y  L+  L    
Sbjct: 431 NMRKLGCHPTIDTYIMLIRKFCRWRQFDDVFKLWNQISENGLGPDRSSYIVLIHGLFLNG 490

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV 530
            ++ A K   +MK      D    ++L  ++ +  V
Sbjct: 491 KLEEAYKFYADMKEKQLLPDPKLDEMLQTWLSNKQV 526



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 60/146 (41%)

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G    A R+W EM       +   +  II  ++K+G L     ++  M+  G  P    Y
Sbjct: 283 GSPREADRIWREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKLYNQMKEVGIEPDRKIY 342

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + ++   A    V  A+ L  +M   G+ P   TY +L+  L + + +D A  +  EM  
Sbjct: 343 NSVIFALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQ 402

Query: 509 MGYSVDVSASDVLMVYIKDGSVDHAL 534
            G+S  +         ++ G    AL
Sbjct: 403 HGHSPTIRTYHAFFRSLRTGEEVFAL 428


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 173/402 (43%), Gaps = 6/402 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           Y +L D L + R+ D    L  EMV     +GI++    Y+  I  ++K   +E +   F
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVS----HGINIKPYMYDCCICVMSKEGVMEKAKALF 370

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             ++ S      Q+Y  L+  +  +    + +E+   M+K    +   TY  ++  +  S
Sbjct: 371 DGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSS 430

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G LD A  + +EM     RP+  I+ +L+ +  +  R   +M+V  EM+  G  P    Y
Sbjct: 431 GDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCY 490

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SLI   +KA ++D A     EM   G +PN   +   I  + ++ +   A     +M  
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G LP     + L+  +   G+V  A   Y SM   G+     TYT L+  L K   VD 
Sbjct: 551 CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A +I  EM+  G + DV +  VL+  + K G++  A      M   G+  N  I   L  
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              ++   E AK LL+         + V Y +++    +  D
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 180/421 (42%), Gaps = 25/421 (5%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI----SLFSAYNRVIQY 244
           ++    P   CY  L   L++++  D   S   EMV +  K       +  S Y    ++
Sbjct: 479 KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEF 538

Query: 245 LAKADKL--EMSYCCF--KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
            A ADK   EM  C     KVL +           L+  +  KG   +A   Y SM    
Sbjct: 539 -ASADKYVKEMRECGVLPNKVLCTG----------LINEYCKKGKVIEACSAYRSMVDQG 587

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              D  TY +++  L K+ ++D A ++F+EM+ +   P    +  L++   K G +  + 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            ++ EM   G  P+  +Y  L+  + ++G+++ A  L DEM + G  PN   +  II+ +
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            KSG L  A  +F +M+  G +P    Y+ L++       V+ A+ ++ +    G     
Sbjct: 708 CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASST 766

Query: 481 STYTALLTLLAKRKLVDVAAKILLEM-----KTMGYSVDVSASDVLMVYIKDGSVDHALR 535
           + + AL+  + K    ++  ++L  +        G   DV+ + ++    K+G+++ A  
Sbjct: 767 APFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKE 826

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M ++ +         L     K        P+ +  + +  + D ++Y+ ++   +
Sbjct: 827 LFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFL 886

Query: 596 R 596
           +
Sbjct: 887 K 887



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 113/534 (21%), Positives = 218/534 (40%), Gaps = 75/534 (14%)

Query: 132 ASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQS 191
           + A A+I  ++ +  W   L +    ++  P++V      K ++D    LS F W   Q 
Sbjct: 32  SDASAEIAGILKQENWRDTLVSSNLSIEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQK 91

Query: 192 W---------YVPGDECYVMLFD----------------------VLNESRDF-----DG 215
                     ++  D C    F+                      ++  S++F     DG
Sbjct: 92  VTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVAEVWSSIVRCSQEFVGKSDDG 151

Query: 216 ML--SLFDEMVHD----------SSKNGISLFSAYNR---VIQYLAKADKLEMSYCCFKK 260
           +L   LFD  +            SS  G+ L    +R   ++  L + ++L++ +  +K 
Sbjct: 152 VLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKG 211

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK----GECSLDGS---------- 306
           +++ +   D ++Y++L+      G      ++    EK       ++DG+          
Sbjct: 212 MVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICK 271

Query: 307 -------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
                  TY+++I  L K  RL+ A  L  EM         + ++ L+D + K    D +
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             +  EM   G      MY   I   +K G ++ A  L+D M  +G  P    +  +IE 
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEG 391

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + +   +     +  +M++   + +P TY  +++   SSG +D A  +   M ++G RP 
Sbjct: 392 YCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN 451

Query: 480 LSTYTALL-TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
           +  YT L+ T L   +  D A ++L EMK  G + D+   + L++ + K   +D A  +L
Sbjct: 452 VVIYTTLIKTFLQNSRFGD-AMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             M  +G++ N F         ++ + + SA   ++   E     + VL T ++
Sbjct: 511 VEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLI 564



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 146/321 (45%), Gaps = 15/321 (4%)

Query: 194 VPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADK 250
           + GD + Y +L + L ++   D    +F EM       GI+  +FS Y  +I   +K   
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREM----RGKGIAPDVFS-YGVLINGFSKLGN 642

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           ++ +   F ++++     +   YN+L+  F   G   KA E+ + M       +  TY  
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY-MEMQGC 369
           +I    KSG L  A +LF EMK +   P   ++ +LVD   +   ++ ++ ++    +GC
Sbjct: 703 IIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGC 762

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF----RPNFGLFTMIIESHAKSGK 425
               +AP + +LI    K GK +    + + +    F    +PN   + ++I+   K G 
Sbjct: 763 AS-STAP-FNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGN 820

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           L+ A  +F  M+ A  +PT  TY+ LL  +   G+      +++   +AG+ P    Y+ 
Sbjct: 821 LEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSV 880

Query: 486 LLTLLAKRKLVDVAAKILLEM 506
           ++    K  +   A  ++ +M
Sbjct: 881 IINAFLKEGMTTKALVLVDQM 901



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 105/262 (40%), Gaps = 13/262 (4%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  + D   +S D      LFDEM     K  +     Y  ++    + + +E +
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEM---KLKGLVPDSFVYTTLVDGCCRLNDVERA 751

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS----TYEL 310
              F       C   T  +N L+      G      E+   +  G     G     TY +
Sbjct: 752 ITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNI 810

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           MI  L K G L+AA +LF +M+  N  P+   + SL++   K GR      V+ E    G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA-----GFRPNFGLFTMIIESHAKSGK 425
             P   MY  +I ++ K G    AL L D+M        G + +      ++   AK G+
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGE 930

Query: 426 LDIAMSIFTDMERAGFLPTPST 447
           +++A  +  +M R  ++P  +T
Sbjct: 931 MEVAEKVMENMVRLQYIPDSAT 952


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 6/343 (1%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE--CSLDGSTYELMIPSLAKSGRLDA 323
           C  D  SYN+L+    N+G   +A ++   M +G   CS D   Y  +I    K G ++ 
Sbjct: 180 CVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNK 239

Query: 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383
           A  LF+EM +R   P    ++S+V ++ KA  +D +     +M   G  P    Y +LI 
Sbjct: 240 ACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIY 299

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            Y+  G+   A+R++ EMR     P+      ++ S  K GK+  A  +F  M   G  P
Sbjct: 300 GYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNP 359

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              +Y+ +L  +A+ G +     L++ M   G+ P + T+  L+   A   ++D A  I 
Sbjct: 360 DVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIF 419

Query: 504 LEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            EM+  G     V+   V+    + G +D A+     M   G+  + +    L +    +
Sbjct: 420 NEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTH 479

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLV---RCQDEQN 602
                AK L+   + +  ++D+V + S++ +L    R  D QN
Sbjct: 480 GSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQN 522



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 170/389 (43%), Gaps = 8/389 (2%)

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           M  LFD M+ D     I  F   N +I+  A    L+ +   F ++ D   K    +Y  
Sbjct: 380 MTDLFDLMLGDGIAPDIYTF---NVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMT 436

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           ++      G    A E +  M       D   Y  +I      G L  A +L  E+    
Sbjct: 437 VIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 496

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
            R     F S+++++ K GR+  +  ++      G  P A +Y  L++ Y   GK++ AL
Sbjct: 497 MRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           R++D M  AG  PN   +  ++  + K G++D  +S+F +M + G  P+   Y+ +++  
Sbjct: 557 RVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             +G+   A   ++ MT +G+     TY+ +L  L K +  D A  +  E++ M   +D+
Sbjct: 617 FEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDI 676

Query: 516 SASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
              + ++  + +   V+ A      +  SG+         +  + +K  L E A+ +  +
Sbjct: 677 ITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSS 736

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
              +  + D    + +L H+VR   ++NE
Sbjct: 737 MQNAGCEPD----SRLLNHVVRELLKKNE 761



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 172/381 (45%), Gaps = 11/381 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           A N ++  L K  K++ +   F  +       D  SY +++  +  KG      ++++ M
Sbjct: 328 ALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLM 387

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                + D  T+ ++I + A  G LD A+ +F EM++   +P    + +++ ++ + G++
Sbjct: 388 LGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKM 447

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +M+ + +M   G  P    Y  LI+ +   G L  A  L  E+   G R +   F  I
Sbjct: 448 DDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSI 507

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I +  K G++  A +IF      G  P    Y+ L++ +   G+++ A++++++M SAG+
Sbjct: 508 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGI 567

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG------SV 530
            P +  Y  L+    K   +D    +  EM   G    +  S +L   I DG      +V
Sbjct: 568 EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKG----IKPSTILYNIIIDGLFEAGRTV 623

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
              +++   M  SGI  N      +     KN  ++ A  L +       K+D++   ++
Sbjct: 624 PAKVKFHE-MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTM 682

Query: 591 LAHLVRCQDEQNERHLMAILS 611
           +A + + +  +  + L A +S
Sbjct: 683 IAGMFQTRRVEEAKDLFASIS 703



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 170/397 (42%), Gaps = 6/397 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D   +  D +    LF EMV    + GI      Y+ V+  L KA  ++ +    
Sbjct: 224 YNTVIDGFFKEGDVNKACDLFKEMV----QRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +++++     D  +YN L+  + + G   +A  +++ M +     D      ++ SL K 
Sbjct: 280 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKY 339

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G++  A  +F  M  +   P    +  +++     G L     ++  M G G  P    +
Sbjct: 340 GKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTF 399

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI++YA  G LD A+ +++EMR  G +P+   +  +I +  + GK+D AM  F  M  
Sbjct: 400 NVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMID 459

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G +P    Y CL++   + G +  A +L + + + G+R  +  + +++  L K   V  
Sbjct: 460 QGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMD 519

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A  I      +G   D    ++LM  Y   G ++ ALR    M S+GI  N      L  
Sbjct: 520 AQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVN 579

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
              K    +    L    ++   K   +LY  ++  L
Sbjct: 580 GYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616



 Score = 89.4 bits (220), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 145/318 (45%), Gaps = 2/318 (0%)

Query: 222 EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           E++ +   NG+ L    +  +I  L K  ++  +   F   ++     D   YN+LM  +
Sbjct: 487 ELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGY 546

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   KA  ++++M       +   Y  ++    K GR+D  + LF+EM ++  +PS 
Sbjct: 547 CLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 606

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
            ++  ++D + +AGR   +   + EM   G   +   Y  ++    K    D A+ L+ E
Sbjct: 607 ILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKE 666

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           +R    + +      +I    ++ +++ A  +F  + R+G +P   TYS ++      G 
Sbjct: 667 LRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGL 726

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASD 519
           V+ A  +++SM +AG  P       ++  L K+  +  A   L ++    +S++ ++A  
Sbjct: 727 VEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAML 786

Query: 520 VLMVYIKDGSVDHALRWL 537
           ++ ++   G+    +R+L
Sbjct: 787 LVDLFSSKGTCREQIRFL 804


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 151/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + R F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTREHKLWVPFDTCRKVL-EHLMKLRYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+    K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y  M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           + TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 387 IGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLM 429



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 148/348 (42%), Gaps = 1/348 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFY 130

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTF 250

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+  H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 251 TTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSM 310

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D  + + ++    K+G +D A +  + M    IR ++     L     +      
Sbjct: 311 KGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVD 370

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           A+ +L   +    K D+  YT ++    +  D      L+  +    H
Sbjct: 371 AEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 418



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 142/319 (44%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  +E      F+    +++ + K     
Sbjct: 65  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFK 124

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLI 244

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I   M +     D+   + L+  + K G +  A   
Sbjct: 245 PNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXL 304

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ + F    L + C K    ++A    +  ++   ++D V YT++++ L  
Sbjct: 305 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGL-- 362

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 363 CQEGRSVDAEKMLREMLSV 381



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/287 (19%), Positives = 120/287 (41%), Gaps = 40/287 (13%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLDTA 394
           R    +F+ L+ +  ++G L  +++ Y   +   H+   P      ++E   K       
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTRE--HKLWVPFDTCRKVLEHLMKLRYFKLV 126

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              ++E+   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+  
Sbjct: 127 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 186

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +   G +D   +L ++M ++G++P + TY+ L+  L K   +D A ++  EM   G   +
Sbjct: 187 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPN 246

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V+ + ++  + K+G VD A+   + M                       L +S  P   
Sbjct: 247 GVTFTTLIXGHCKNGRVDLAMEIYKXM-----------------------LSQSLLP--- 280

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF 620
                    DL+ Y +++  L +  D +    L+  +S    K   F
Sbjct: 281 ---------DLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKF 318


>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 685

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 147/316 (46%), Gaps = 4/316 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +   V  +S+D D M  LFDEM+    +     FS      +  +  +K   +   F+
Sbjct: 165 YNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNK---AVEWFE 221

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+    C+ D  +Y+ ++  +   G    A  +Y+     +  LD  T+  +I     +G
Sbjct: 222 KMSSFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAG 281

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             D  + ++QEMK    +P+  I+ +L+D+MG+A R   +  +Y EM   G  P+   Y 
Sbjct: 282 NYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYA 341

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME-R 438
           SL+ +Y +    + AL ++ EM+  G   N  L+  ++   A  G  + A  IF DM+  
Sbjct: 342 SLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTS 401

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
           A  L    T+S L+ +++ +G V  A ++ N M  +G +P +   T+L+    K    D 
Sbjct: 402 ATCLCDSWTFSSLITIYSCTGNVSEAERMLNEMIESGSQPTIFVLTSLVQCYGKVGRTDD 461

Query: 499 AAKILLEMKTMGYSVD 514
             K   ++  +G S D
Sbjct: 462 VVKTFNQLLDLGISPD 477



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 116/533 (21%), Positives = 231/533 (43%), Gaps = 51/533 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN  ++   K+  L+     F ++L    + D  +++ +++      LP KA E +E M 
Sbjct: 165 YNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNKAVEWFEKMS 224

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  D  TY  MI +  ++G +D A++L+   +   +R     F++L+   G AG  D
Sbjct: 225 SFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNYD 284

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + VY EM+  G +P+  +Y +L+++  +A +   A  ++ EM   GF PN+  +  ++
Sbjct: 285 GCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLL 344

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-TSAGL 476
            ++ +    + A+ ++ +M+  G       Y+ LL M A  G  + A +++  M TSA  
Sbjct: 345 RAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSATC 404

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
                T+++L+T+ +    V  A ++L EM   G    +   + ++  Y K G  D  ++
Sbjct: 405 LCDSWTFSSLITIYSCTGNVSEAERMLNEMIESGSQPTIFVLTSLVQCYGKVGRTDDVVK 464

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   GI  ++      F  C+ N + ++ K  L    +   K +  L  SV+ +LV
Sbjct: 465 TFNQLLDLGISPDD-----RFCGCLLNVMTQTPKEELGKLNDCVKKANPKL-GSVVRYLV 518

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
                             + K  A                     E F+ I  E++    
Sbjct: 519 E----------GLEEGGGEFKKEA--------------------SELFNSIADEVK---- 544

Query: 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 715
           + F N L++  V +  +++A  +  +    +++   +       WSL +++LS+GA+L A
Sbjct: 545 KPFCNSLIDLCVNLNLLDKACELLDLGLTLEIYTD-VQSKSQTQWSLHLKSLSLGASLTA 603

Query: 716 VMHTLHRFRKRMLYYGVVPRRIKLVTG--------PTLKIVIAQMLSSVESPF 760
           +   ++   K +     +P  + + TG          L  V+   L+ + +PF
Sbjct: 604 LHAWINDLSKTLESGEDLPPLLGINTGHGKHRYSDKGLASVVESHLNELNAPF 656


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 164/353 (46%), Gaps = 1/353 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           + N +I  L + + ++ S     K+       D  ++N L+    N+G   +A E++  M
Sbjct: 130 SLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEM 189

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     +  +Y  +I  L K+G    A+ +F++M++   +P+   +++++DS+ K   +
Sbjct: 190 VKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLV 249

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +M+   EM   G  P+   Y S++  +   G+L+ A RL+ EM      PN   FT++
Sbjct: 250 NDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTIL 309

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K G +  A  +F  M   G  P  STY+ L++ +     ++ A K++  M   G 
Sbjct: 310 VDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGC 369

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            PG  +Y  L+    K + +D A  +L EM     + D V+ S ++    + G    AL 
Sbjct: 370 APGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALN 429

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
             + M S G   N      L +   K+   + A  LL++  E   + ++V YT
Sbjct: 430 LFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYT 482



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 146/305 (47%), Gaps = 5/305 (1%)

Query: 219 LFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           LF EMV  D   N ++    +  ++  L K   +  +   F+ + +   + D  +YN LM
Sbjct: 290 LFKEMVGRDVMPNTVT----FTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALM 345

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             +  + L  +A +++E M +  C+    +Y ++I    KS R+D A  L  EM  +   
Sbjct: 346 DGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALN 405

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P    +++L+  + + GR   ++ ++ EM   G  P+   YV L++ + K G LD AL+L
Sbjct: 406 PDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKL 465

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
              M+     PN   +T++IE    +GKL++A  +F+ +   G  P   TY+ +++    
Sbjct: 466 LKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLK 525

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G  D A  L+  M   G  P   +Y  ++    + +    A +++ EM    +SV++S 
Sbjct: 526 EGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLST 585

Query: 518 SDVLM 522
             +L+
Sbjct: 586 FQMLL 590



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 3/291 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + LF+EMV    +  +    +Y  VI  L K     M+   FKK+  + CK +  +Y+ +
Sbjct: 183 VELFNEMVKRGHEPNVI---SYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTI 239

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +       L   A E    M +     +  TY  ++      G+L+ A +LF+EM  R+ 
Sbjct: 240 IDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDV 299

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   F  LVD + K G +  +  V+  M   G  P    Y +L++ Y     ++ A +
Sbjct: 300 MPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKK 359

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +++ M   G  P    + ++I  + KS ++D A S+  +M      P   TYS L++   
Sbjct: 360 VFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLC 419

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
             G+   A+ L+  M S G  P L TY  LL    K   +D A K+L  MK
Sbjct: 420 QLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMK 470



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 156/361 (43%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I  L    K++ +   F +++    + +  SY  ++      G    A ++++ M
Sbjct: 165 TFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKM 224

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E+  C  +  TY  +I SL K   ++ A++   EM ER   P+   + S+V      G+L
Sbjct: 225 EQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQL 284

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + +++ EM G    P+   +  L++   K G +  A  +++ M   G  P+   +  +
Sbjct: 285 NEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNAL 344

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++ +     ++ A  +F  M R G  P   +Y+ L+  +  S ++D A  L   M    L
Sbjct: 345 MDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKAL 404

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P   TY+ L+  L +      A  +  EM + G   ++    +L+  + K G +D AL+
Sbjct: 405 NPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALK 464

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L+ M    +  N      L E        E AK L         + D+  YT ++  L+
Sbjct: 465 LLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLL 524

Query: 596 R 596
           +
Sbjct: 525 K 525



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 114/272 (41%), Gaps = 38/272 (13%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           PG   Y +L +   +SR  D   SL  EM H                             
Sbjct: 371 PGAHSYNILINGYCKSRRMDEAKSLLAEMYH----------------------------- 401

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                K L+     DT +Y+ LM      G P +A  +++ M       +  TY +++  
Sbjct: 402 -----KALNP----DTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDG 452

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K G LD A+KL + MKE+   P+   +  L++ M  AG+L+ + +++ ++ G G RP 
Sbjct: 453 FCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPD 512

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  +I+   K G  D A  L+ +M   GF PN   + ++I+   ++     A+ +  
Sbjct: 513 IRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLID 572

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
           +M    F    ST+  LL++ +    +   M+
Sbjct: 573 EMVGKRFSVNLSTFQMLLDLESQDEIISQFMR 604



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 2/216 (0%)

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D ++  +  M     RPS   +   + S+AK  +  T + L ++M +     N     +
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I    +   +D ++S+   M + G  P   T++ L+    + G++  A++L+N M   G
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHAL 534
             P + +YT ++  L K     +A  +  +M+  G   + V+ S ++    KD  V+ A+
Sbjct: 194 HEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAM 253

Query: 535 RWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
            +L  M   GI  N F    +    C    L E+ +
Sbjct: 254 EFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATR 289


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 130/255 (50%), Gaps = 3/255 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L   L    D  G++ LF +M    +K  +S    Y  +I+ L  A ++E  +  + 
Sbjct: 240 YNSLLSSLGRKGDIQGLMELFGQM---KAKGLVSNELTYAILIERLGWAGRVEDVWQLYL 296

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++D+D K D  + N ++      G    AFE+++ M+    + D  TY ++I  L ++G
Sbjct: 297 EMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAG 356

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +LDAA  L  EM+E    P+   + +L+ S GK   L  + ++++EM+  G  P+   Y 
Sbjct: 357 KLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYS 416

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SLIE + KAG+ D A+ L+ EM+  G  PN   + ++I+   ++G+   AM    +M  A
Sbjct: 417 SLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDA 476

Query: 440 GFLPTPSTYSCLLEM 454
           G      T S L+ +
Sbjct: 477 GCQMGKVTKSLLVRI 491



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 102/467 (21%), Positives = 202/467 (43%), Gaps = 43/467 (9%)

Query: 153 TQLDKLQFVPKMVHITQALKVINDSDTSLSLF-RWAKRQSWYVPGDECYVMLFDVLNESR 211
           T+LD  Q    ++HI     ++  +  +L+ F +   R + Y      Y  +  V  +  
Sbjct: 26  TKLDT-QLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYT-----YSSMIQVFMKGG 79

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           D    L ++ +M+       +   + +N +I  LAKAD++E +   F  +   +   D  
Sbjct: 80  DVQNGLLMYKQMLKAKF---VPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVY 136

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y +L+      G      +++ESM    C  +  TY  ++ +   +GR+D A  +FQ+M
Sbjct: 137 TYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQM 196

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTS-------------------------------- 359
            ++  +P    +  L+D+ GK G+L+ +                                
Sbjct: 197 VQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGL 256

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M+++ +M+  G   +   Y  LIE    AG+++   +L+ EM     + +      +++ 
Sbjct: 257 MELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDC 316

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
            +K+G+++ A  +F DM+  G      TY+ L+     +G++D+A  L   M   G  P 
Sbjct: 317 LSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPN 376

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLR 538
           + TY  L++   K   +  A ++ LEMK  G + + VS S ++  + K G  D A+   R
Sbjct: 377 IITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFR 436

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
            M + G   N+     L +  ++   + +A   L    ++  ++  V
Sbjct: 437 EMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQMGKV 483



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 166/355 (46%), Gaps = 4/355 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +IQ   K   ++     +K++L +    D  ++N+L+          +A  ++  M 
Sbjct: 68  YSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMF 127

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K   S D  TY ++I SL   GR+DA +KLF+ M  +  +P+   + S++ + G AGR+D
Sbjct: 128 KLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVD 187

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  ++ +M   G +P A  Y  LI+++ K G+L+ A     + R      N   +  ++
Sbjct: 188 EACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSF---TNEVTYNSLL 244

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            S  + G +   M +F  M+  G +    TY+ L+E    +G+V+   +LY  M    ++
Sbjct: 245 SSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIK 304

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
             + T   +L  L+K   V+ A ++  +MK  G + D    ++L+  + + G +D A   
Sbjct: 305 YDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGAL 364

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           L  M  +G   N      L  S  K +   +A  L     E     ++V Y+S++
Sbjct: 365 LLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLI 419



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 132/272 (48%), Gaps = 7/272 (2%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           M+  L  + R D   +L + M++   +    +F +L+   G+A  ++ +++        G
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEG 60

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
            RP+A  Y S+I+ + K G +   L ++ +M  A F P+   F ++I+S AK+ +++ A 
Sbjct: 61  GRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEAC 120

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           ++F DM +    P   TY+ L+    + G++D+ MKL+ SMT+ G +P L TY +++   
Sbjct: 121 NVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAF 180

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNN 549
                VD A  I  +M   G   D    ++L+  + K G ++ A     F+G S   TN 
Sbjct: 181 GSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERA---FDFVGKSRSFTNE 237

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAK 581
                L  S  +       + L+E + +  AK
Sbjct: 238 VTYNSLLSSLGRKG---DIQGLMELFGQMKAK 266



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 160/362 (44%), Gaps = 39/362 (10%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFE----------------------------------- 291
           K+DTQ +N L+ ++    +  KA +                                   
Sbjct: 27  KLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLL 86

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +Y+ M K +   D +T+ ++I SLAK+ +++ A  +F +M + N  P    +  L+ S+G
Sbjct: 87  MYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLG 146

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
             GR+D  MK++  M   G +P+   Y S++ ++  AG++D A  ++ +M   G +P+  
Sbjct: 147 TIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAV 206

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            + ++I++  K+G+L+ A   F    R+       TY+ LL      G +   M+L+  M
Sbjct: 207 TYNILIDAFGKTGQLERAFD-FVGKSRS--FTNEVTYNSLLSSLGRKGDIQGLMELFGQM 263

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSV 530
            + GL     TY  L+  L     V+   ++ LEM       D V+ ++VL    K G V
Sbjct: 264 KAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRV 323

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           + A    + M   G+  +      L     +    ++A  LL    E+    +++ Y ++
Sbjct: 324 EAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTL 383

Query: 591 LA 592
           ++
Sbjct: 384 IS 385



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 133/306 (43%), Gaps = 2/306 (0%)

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           + ESM+K    LD   +  +I    ++  ++ A++      +   RP+   ++S++    
Sbjct: 17  LVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFM 76

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K G +   + +Y +M      P    +  LI+S AKA +++ A  ++ +M      P+  
Sbjct: 77  KGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVY 136

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +T++I S    G++D  M +F  M   G  P   TY  ++    S+G+VD A  ++  M
Sbjct: 137 TYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQM 196

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
              GL+P   TY  L+    K   ++ A   +   K+  ++ +V+ + +L    + G + 
Sbjct: 197 VQKGLQPDAVTYNILIDAFGKTGQLERAFDFV--GKSRSFTNEVTYNSLLSSLGRKGDIQ 254

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             +     M + G+ +N      L E        E    L    V++  K D+V   +VL
Sbjct: 255 GLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVL 314

Query: 592 AHLVRC 597
             L + 
Sbjct: 315 DCLSKA 320


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 160/363 (44%), Gaps = 3/363 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++  L+K   ++ +      +L      D  +YN L++     G   +A ++   M
Sbjct: 303 TFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQM 362

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            + +CS +  TY  +I +L K  +++ A KL   +  +   P    + SL+  +  +   
Sbjct: 363 IERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNH 422

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +M++Y EM+  G  P    Y  LI+S    GKL  AL L  EM ++G   N   +  +
Sbjct: 423 TVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTL 482

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K+ ++  A  IF  ME  G      TY+ L++    S +V+ A +L + M   GL
Sbjct: 483 IDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGL 542

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           RP   TY +LLT   K   +  AA I+  M + G   D+     L+  + K G V+ A +
Sbjct: 543 RPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATK 602

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            LR +   GI         + ++  +    + A  L    +E A   D V Y  V   L 
Sbjct: 603 LLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGL- 661

Query: 596 RCQ 598
            CQ
Sbjct: 662 -CQ 663



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 163/366 (44%), Gaps = 2/366 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S +N +I+ L +A ++  +    +++ D     D +++  +M  F+ +G    A  + E 
Sbjct: 196 STFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQ 255

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAG 354
           M +  C +   T  +++    K GR++ A++  +EM  R  F P    F  LV+ + K G
Sbjct: 256 MVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTG 315

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            +  +++V   M   G  P    Y SLI    K G++D A+++ ++M      PN   + 
Sbjct: 316 HVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYN 375

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            II +  K  +++ A  +   +   G LP   TY+ L++    S     AM+LY  M + 
Sbjct: 376 TIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTK 435

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           G  P   TY  L+  L  R  +  A  +L EM+  G + +V   + L+  + K+  +  A
Sbjct: 436 GCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEA 495

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
                 M   G+  N+     L +   K+   E A  L++  +    + D   Y S+L +
Sbjct: 496 EEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTY 555

Query: 594 LVRCQD 599
             +  D
Sbjct: 556 FCKAGD 561



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 107/484 (22%), Positives = 192/484 (39%), Gaps = 37/484 (7%)

Query: 159 QFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLS 218
            F P    +  +L+   DS   + LF WA +Q  + P    +  +   L ++ +FD M  
Sbjct: 53  NFTP--TQLLHSLRREEDSSAVIHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKD 110

Query: 219 LFDEM-----VHDSSK-----NGISLFSAYNRVIQY-----------------------L 245
           +  EM     V D+          + F  YN ++Q+                       L
Sbjct: 111 ILKEMKISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVL 170

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
              +KL++       ++    + D  ++N+L+           A  + E ME      D 
Sbjct: 171 VDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDE 230

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            T+  ++    + G LD A+++ ++M E     +      LV+   K GR++ +++   E
Sbjct: 231 KTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEE 290

Query: 366 MQ-GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           M    G  P    +  L+   +K G +  AL + D M   GF P+   +  +I    K G
Sbjct: 291 MSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLG 350

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           ++D A+ +   M      P   TY+ ++       QV+ A KL   +T  G+ P + TY 
Sbjct: 351 EVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYN 410

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK-DGSVDHALRWLRFMGSS 543
           +L+  L   +   VA ++  EMKT G   D    ++L+  +   G +  AL  L+ M  S
Sbjct: 411 SLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVS 470

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
           G   N      L +   KN     A+ + +         + V Y +++  L + +  +  
Sbjct: 471 GCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEA 530

Query: 604 RHLM 607
             LM
Sbjct: 531 SQLM 534



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L D   +++       +FD+M +   S+N ++    YN +I  L K++++E +    
Sbjct: 479 YNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVT----YNTLIDGLCKSERVEEASQLM 534

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            +++    + D  +YN L+T F   G   KA +I ++M    C  D  TY  +I  L K+
Sbjct: 535 DQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKA 594

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR++AA KL + ++ +    + + +  ++ ++ +  R   +++++ EM      P A  Y
Sbjct: 595 GRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTY 654

Query: 379 VSLIESYAKAGK-LDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             +     + G  +  A+    EM   G+ P F  F M+ E 
Sbjct: 655 KIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEG 696



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 132/307 (42%), Gaps = 11/307 (3%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VH 225
           + Q L +  +   ++ L++  K +  + P +  Y ML D L         L+L  EM V 
Sbjct: 412 LIQGLCLSRNHTVAMELYKEMKTKGCH-PDEFTYNMLIDSLCFRGKLQEALNLLKEMEVS 470

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
             ++N I+    YN +I    K  ++  +   F ++       ++ +YN L+        
Sbjct: 471 GCARNVIT----YNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSER 526

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +A ++ + M       D  TY  ++    K+G +  A  + Q M      P    + +
Sbjct: 527 VEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGT 586

Query: 346 LVDSMGKAGRLDTSMKVY--MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
           L+  + KAGR++ + K+   ++M+G    P A  Y  +I++  +  +   A+RL+ EM  
Sbjct: 587 LIAGLCKAGRVEAATKLLRTIQMKGINLTPHA--YNPVIQALFRRKRSKEAVRLFREMIE 644

Query: 404 AGFRPNFGLFTMIIESHAKSGK-LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
               P+   + ++     + G  +  A+    +M   G++P  S++  L E   S   V 
Sbjct: 645 KAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSLAMVG 704

Query: 463 SAMKLYN 469
           + +KL +
Sbjct: 705 TLIKLID 711


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 149/323 (46%), Gaps = 13/323 (4%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKA--- 248
           Y P    Y  + D L +S+  D  L L + M     K+GI      YN +I  L  +   
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRM----EKDGIGPDVVTYNSLISGLCSSGRW 237

Query: 249 -DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
            D   M  C  K+ +  D      ++N L+   + +G   +A E YE M +     D  T
Sbjct: 238 SDATRMVSCMTKREIYPD----VFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVT 293

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y L+I  L    RLD A ++F  M  +   P    ++ L++   K+ +++  MK++ EM 
Sbjct: 294 YSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMS 353

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G   +   Y  LI+ Y +AGKL+ A  ++  M   G  PN   + +++     +GK++
Sbjct: 354 QRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+ I  DM++ G      TY+ ++     +G+V  A  +Y S+   GL P + TYT ++
Sbjct: 414 KALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMM 473

Query: 488 TLLAKRKLVDVAAKILLEMKTMG 510
             L K+ L   A  +  +MK  G
Sbjct: 474 LGLYKKGLRREADALFRKMKEDG 496



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 151/337 (44%), Gaps = 4/337 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L +FD+MV    K  + +   YN +I  L K+ +++ +     ++       D  +YN L
Sbjct: 171 LYMFDQMVGMGYKPNVVI---YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSL 227

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           ++   + G    A  +   M K E   D  T+  +I +  K GR+  A + ++EM  R+ 
Sbjct: 228 ISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL 287

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    ++ L+  +    RLD + +++  M   G  P    Y  LI  Y K+ K++  ++
Sbjct: 288 DPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMK 347

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+ EM   G   N   +T++I+ + ++GKL++A  IF  M   G  P   TY+ LL    
Sbjct: 348 LFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLC 407

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            +G+++ A+ +   M   G+   + TY  ++  + K   V  A  I   +   G   D+ 
Sbjct: 408 DNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIW 467

Query: 517 ASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIV 552
               +M+ + K G    A    R M   GI  N   V
Sbjct: 468 TYTTMMLGLYKKGLRREADALFRKMKEDGILPNECYV 504



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 158/364 (43%), Gaps = 5/364 (1%)

Query: 161 VPKMVHITQALKVIND-SDTSLSLFRWAKRQSWYVPGDECYV-MLFDVLNESRDFDGMLS 218
           +P +   ++ L  I+      + ++ W + Q   +P + C   +L +           LS
Sbjct: 78  LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALS 137

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
              +M+    +  I  F +   ++    + D++  +   F +++    K +   YN ++ 
Sbjct: 138 FLGKMIKLGHEPSIVTFGS---LLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIID 194

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
                     A ++   MEK     D  TY  +I  L  SGR   A ++   M +R   P
Sbjct: 195 GLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYP 254

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               F +L+D+  K GR+  + + Y EM      P    Y  LI       +LD A  ++
Sbjct: 255 DVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMF 314

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M   G  P+   ++++I  + KS K++  M +F +M + G +    TY+ L++ +  +
Sbjct: 315 GFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRA 374

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G+++ A +++  M   G+ P + TY  LL  L     ++ A  IL +M+  G   D+   
Sbjct: 375 GKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTY 434

Query: 519 DVLM 522
           ++++
Sbjct: 435 NIII 438



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 136/315 (43%), Gaps = 3/315 (0%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            T  +++    +  +L  A+    +M +    PS   F SL++   +  R+  ++ ++ +
Sbjct: 117 CTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQ 176

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M G G++P+  +Y ++I+   K+ ++D AL L + M   G  P+   +  +I     SG+
Sbjct: 177 MVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGR 236

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
              A  + + M +    P   T++ L++     G+V  A + Y  M    L P + TY+ 
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSG 544
           L+  L     +D A ++   M + G   DV    +L+  Y K   V+H ++    M   G
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
           +  N      L +   +      A+ +    V      +++ Y  +L  L  C + + E+
Sbjct: 357 VVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGL--CDNGKIEK 414

Query: 605 HLMAILSATKHKAHA 619
            L+ +    K+   A
Sbjct: 415 ALVILADMQKNGMDA 429



 Score = 43.1 bits (100), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 1/172 (0%)

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           KLD ++ +F  M +   LP+ + +S LL   +   + D  + L+  M   G+   L T  
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSS 543
            LL    +   + +A   L +M  +G+    V+   +L  + +   V  AL     M   
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGM 180

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           G + N  I   + +   K+   ++A  LL    +     D+V Y S+++ L 
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLC 232


>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g65820
 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 178/401 (44%), Gaps = 44/401 (10%)

Query: 149 PELETQLDK--LQFVPKMVHITQALKVINDS-DTSLSLFRWAKRQSWYVPGDECYVMLFD 205
           P+LE  L++  ++  P +  I + L    D+ +     F WA +Q  Y    E Y  +  
Sbjct: 98  PKLELALNESGVELRPGL--IERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVK 155

Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
           +L++ R F  +  L +EM  ++ +                                    
Sbjct: 156 ILSKMRQFGAVWGLIEEMRKENPQ------------------------------------ 179

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
             I+ + + VL+  F +  +  KA E+ + M K     D   +  ++ +L K G +  A 
Sbjct: 180 -LIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAA 238

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           KLF++M+ R F  +   F SL+    + G++  +  V ++M   G  P    Y +L+  Y
Sbjct: 239 KLFEDMRMR-FPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGY 297

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
           A AGK+  A  L  +MR  GF PN   +T++I++  K  +++ AM +F +MER       
Sbjct: 298 ANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADV 357

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ L+      G++D    + + M   GL P   TY  ++    K++  +   +++ +
Sbjct: 358 VTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEK 417

Query: 506 MKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI 545
           M+ + Y  D+   +V++ +  K G V  A+R    M  +G+
Sbjct: 418 MRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGL 458



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 1/222 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   Y  L++ + N G    A+++   M +     + + Y ++I +L K  R++ A+K+F
Sbjct: 286 DIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVF 345

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM+          + +LV    K G++D    V  +M   G  PS   Y+ ++ ++ K 
Sbjct: 346 VEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKK 405

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
              +  L L ++MR   + P+ G++ ++I    K G++  A+ ++ +ME  G  P   T+
Sbjct: 406 ESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTF 465

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
             ++   AS G +  A   +  M + GL   +S Y  L  LL
Sbjct: 466 VIMINGLASQGCLLEASDHFKEMVTRGL-FSVSQYGTLKLLL 506



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 109/266 (40%), Gaps = 10/266 (3%)

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
             RP   +   +++  G AG L     V+   Q   +  S  +Y S+++  +K  +    
Sbjct: 110 ELRPG--LIERVLNRCGDAGNLGYRFFVWAAKQP-RYCHSIEVYKSMVKILSKMRQFGAV 166

Query: 395 LRLWDEMRIAG---FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             L +EMR        P   LF ++++  A +  +  A+ +  +M + GF P    + CL
Sbjct: 167 WGLIEEMRKENPQLIEPE--LFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCL 224

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           L+     G V  A KL+  M        L  +T+LL    +   +  A  +L++M   G+
Sbjct: 225 LDALCKHGSVKDAAKLFEDM-RMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGF 283

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D V  +++L  Y   G +  A   LR M   G   N      L ++  K    E A  
Sbjct: 284 EPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMK 343

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           +         + D+V YT++++   +
Sbjct: 344 VFVEMERYECEADVVTYTALVSGFCK 369


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 141/300 (47%), Gaps = 4/300 (1%)

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+L+S    D  SY+  +     KG   +A EI+  ME+   + D  TY ++I  L K  
Sbjct: 82  KLLNSQ-DTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDA 140

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +L+  + L  EM+ R F P+   + +L+     AGR+D +M +  EM+  G  P+   Y 
Sbjct: 141 QLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYT 200

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFR--PNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           +LI+     G+++ A+ +  EM++ G    PN   +T +I    + G  ++ M    +M 
Sbjct: 201 ALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMI 260

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
            +G  P  +TY+ L+      G    A  L N M + G    +  Y +L+  L K   +D
Sbjct: 261 ISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELD 320

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A ++ + M   G + DV     L+  + D G +D AL  ++ M + GI  N+     L 
Sbjct: 321 FAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLI 380



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 145/312 (46%), Gaps = 4/312 (1%)

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           +G+P  +  IY          D  +Y   I  L K G++  A+++F+EM+E+   P    
Sbjct: 70  RGIP-SSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFT 128

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           +  L++ + K  +L+  + +  EMQ  G  P+   Y +LI  +  AG++D A+ + DEM 
Sbjct: 129 YNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEME 188

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG--FLPTPSTYSCLLEMHASSGQ 460
             G  PN   +T +I+     G+++ A+ +  +M+  G    P   TY+ L+      G 
Sbjct: 189 HRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGL 248

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
            +  M+  + M  +G  P  +TYTAL+  L ++     AA +L EM  +G  +DV   + 
Sbjct: 249 FEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNS 308

Query: 521 LMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           L+  + K G +D A      M   G+  + F    L +      L + A  L++      
Sbjct: 309 LIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKG 368

Query: 580 AKVDLVLYTSVL 591
              + V YT+++
Sbjct: 369 IVPNSVTYTTLI 380



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 141/333 (42%), Gaps = 17/333 (5%)

Query: 205 DVLNESRDFDGM---------LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSY 255
           DV++ SR  +G+         + +F EM     K        YN +I  L K  +LEM  
Sbjct: 90  DVISYSRKINGLCKKGQIAEAMEIFREM---EEKGSAPDSFTYNILINGLCKDAQLEMGV 146

Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
               ++          +Y  L+  F   G    A +I + ME    + +  TY  +I  L
Sbjct: 147 SLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGL 206

Query: 316 AKSGRLDAAIKLFQEMKERNFR--PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              G ++ AI + +EMK R     P+   +  L+  + + G  +  M+   EM   G  P
Sbjct: 207 CDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFP 266

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y +LI    + G    A  L +EM   G   +  ++  +I+   K G+LD A  + 
Sbjct: 267 NNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQ 326

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G  P   TY+ L++    +G +D A+ L   M + G+ P   TYT L+    + 
Sbjct: 327 ILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQA 386

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK 526
              D A +++ EMK+ G    + A D+  +  K
Sbjct: 387 DRTDHALQLVNEMKSNGL---MPAGDIYKILFK 416



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 5/223 (2%)

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y   I    K G++  A+ ++ EM   G  P+   + ++I    K  +L++ +S+  +M+
Sbjct: 94  YSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQ 153

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             GF PT  TY+ L+    ++G+VD+AM + + M   G+ P   TYTAL+  L     V+
Sbjct: 154 ARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVE 213

Query: 498 VAAKILLEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
            A  +L EMK  G       V+ + ++    + G  +  + +L  M  SG   NN     
Sbjct: 214 RAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTA 273

Query: 555 LFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L    C K +  E+A  LL   V    ++D+V+Y S++  L +
Sbjct: 274 LIHGLCQKGSFLEAAV-LLNEMVAIGCELDVVIYNSLIDGLCK 315



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 130/309 (42%), Gaps = 6/309 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++ +FR  + +    P    Y +L + L +    +  +SL DEM    ++        Y 
Sbjct: 110 AMEIFREMEEKGS-APDSFTYNILINGLCKDAQLEMGVSLMDEM---QARGFSPTVVTYT 165

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-- 297
            +I     A +++ +     ++       +T +Y  L+    + G   +A  + + M+  
Sbjct: 166 TLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLR 225

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
             EC  +  TY  +I  L + G  +  ++   EM      P+   + +L+  + + G   
Sbjct: 226 GNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFL 285

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  +  EM   G      +Y SLI+   K G+LD A  +   M   G  P+   +T +I
Sbjct: 286 EAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLI 345

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +    +G LD A+ +  +M   G +P   TY+ L+     + + D A++L N M S GL 
Sbjct: 346 QGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLM 405

Query: 478 PGLSTYTAL 486
           P    Y  L
Sbjct: 406 PAGDIYKIL 414


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 147/308 (47%), Gaps = 1/308 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I  L  A KL  +    K++L+    +D  +YN L+  F N+G     F + E M K
Sbjct: 492 NALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTK 551

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY  ++  L   G+LD AIKL+ E K      + + +  +++   KA R++ 
Sbjct: 552 RGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIED 611

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
              ++ E+       ++ +Y  +I+++ + G +  AL+L + M+  G  PN   ++ +I 
Sbjct: 612 VENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIH 671

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
                G ++ A  +  +M + GF+P    Y+ L+  +   GQ+D+A   +  M S  + P
Sbjct: 672 GVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHP 731

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWL 537
              TYT ++    K   ++ A  +L++MK  G   DV   +VL   + K   +D+A +  
Sbjct: 732 NKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVC 791

Query: 538 RFMGSSGI 545
             M + G+
Sbjct: 792 DQMATEGL 799



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 138/298 (46%), Gaps = 3/298 (1%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T   +I  L  +G+L  A ++ +EM ER        + +L+      G+++   ++  EM
Sbjct: 490 TSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEM 549

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G +P    Y  L+      GKLD A++LWDE + +G   N   + +++E + K+ ++
Sbjct: 550 TKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRI 609

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           +   ++F ++           Y+ +++ H  +G V +A++L  +M S G+ P  +TY++L
Sbjct: 610 EDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSL 669

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHA-LRWLRFMGSSG 544
           +  +    LV+ A  ++ EM+  G+  +V     L+  Y K G +D A   WL  M S  
Sbjct: 670 IHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLE-MISFN 728

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           I  N F    + +   K    E A  LL    ES    D+V Y  +     +  D  N
Sbjct: 729 IHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDN 786



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 144/308 (46%), Gaps = 2/308 (0%)

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           LP  +  + E +E+G   +D  TY  +I      G+++   +L +EM +R  +P    + 
Sbjct: 504 LPEASRIVKEMLERG-LPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYN 562

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
            L+  +   G+LD ++K++ E +  G   +   Y  ++E Y KA +++    L++E+   
Sbjct: 563 FLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSK 622

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
               N  ++ +II++H ++G +  A+ +  +M+  G LP  +TYS L+    + G V+ A
Sbjct: 623 KMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDA 682

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
             L + M   G  P +  YTAL+    K   +D A    LEM +     +     V++  
Sbjct: 683 KHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDG 742

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           Y K G+++ A   L  M  SGI  +      L     K    ++A  + +        VD
Sbjct: 743 YCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVD 802

Query: 584 LVLYTSVL 591
            + YT+++
Sbjct: 803 EITYTTLV 810



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 136/287 (47%), Gaps = 6/287 (2%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++    NE +  +G   L +EM    +K GI      YN +++ L    KL+ +   + +
Sbjct: 529 LILGFCNEGK-VEGCFRLREEM----TKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDE 583

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
              S    +  +Y ++M  +           ++  +   +  L+   Y ++I +  ++G 
Sbjct: 584 FKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGN 643

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           + AA++L + MK +   P+   ++SL+  +   G ++ +  +  EM+  G  P+   Y +
Sbjct: 644 VAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTA 703

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI  Y K G++DTA   W EM      PN   +T++I+ + K G ++ A ++   M+ +G
Sbjct: 704 LIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESG 763

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            +P   TY+ L      +  +D+A K+ + M + GL     TYT L+
Sbjct: 764 IVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 810



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 151/359 (42%), Gaps = 45/359 (12%)

Query: 239 NRVIQYLAKADKLEMSYCC--FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           N ++  L KA++ E   CC  F+ + +  C  D  S+  ++      G    A E++  M
Sbjct: 213 NFLLSSLVKANEFEK--CCEVFRVMSEGACP-DVFSFTNVINALCKGGKMENAIELFMKM 269

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           EK   S +  TY  +I  L ++GRLD A +L ++M  +  +P+   + +L++ + K    
Sbjct: 270 EKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFF 329

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D    V  EM G G  P+  ++ +LI+ Y K G ++ AL++ D M      P       +
Sbjct: 330 DKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSL 389

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   KS +++ A +   ++  +G    P     ++       +  SA +    M S   
Sbjct: 390 MQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNF 449

Query: 477 RP----------GLS-------------------------TYTALLTLLAKRKLVDVAAK 501
           RP          GL                          T  AL+  L     +  A++
Sbjct: 450 RPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASR 509

Query: 502 ILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR----TNNFIVRQL 555
           I+ EM   G  +D ++ + +++ +  +G V+   R    M   GI+    T NF++R L
Sbjct: 510 IVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGL 568



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 110/547 (20%), Positives = 207/547 (37%), Gaps = 86/547 (15%)

Query: 132 ASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQS 191
           A+A+  +  VV R++W     TQ   L     ++H+            ++ +F    R+ 
Sbjct: 155 ANALFGLTSVVGRFEW-----TQAFDL-----LIHVYSTQFRNLGFSCAVDVFYLLARKG 204

Query: 192 WYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251
            +     C  +L  ++ ++ +F+    +F  M   +  +  S    +  VI  L K  K+
Sbjct: 205 TFPSLKTCNFLLSSLV-KANEFEKCCEVFRVMSEGACPDVFS----FTNVINALCKGGKM 259

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E +   F K+       +  +YN ++      G    AFE+ E M       +  TY  +
Sbjct: 260 ENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGAL 319

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L K    D    +  EM    F P+  +F +L+D   K G ++ ++K+   M     
Sbjct: 320 INGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNI 379

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG-------------------------- 405
            P++    SL++ + K+ +++ A    +E+  +G                          
Sbjct: 380 TPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFR 439

Query: 406 ---------FRPNFGLFTMIIESHAKSGK-LDIAMSIFTDMER----------------- 438
                    FRP+  L TM++    K GK L+     F  +E+                 
Sbjct: 440 FTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLC 499

Query: 439 -AGFLPTPS----------------TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
            AG LP  S                TY+ L+    + G+V+   +L   MT  G++P + 
Sbjct: 500 GAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIY 559

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFM 540
           TY  LL  L     +D A K+  E K  G   ++    ++M  Y K   ++        +
Sbjct: 560 TYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNEL 619

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDE 600
            S  +  N+ +   + ++  +N    +A  LLE         +   Y+S++  +      
Sbjct: 620 LSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLV 679

Query: 601 QNERHLM 607
           ++ +HL+
Sbjct: 680 EDAKHLI 686


>gi|302771776|ref|XP_002969306.1| hypothetical protein SELMODRAFT_61378 [Selaginella moellendorffii]
 gi|300162782|gb|EFJ29394.1| hypothetical protein SELMODRAFT_61378 [Selaginella moellendorffii]
          Length = 587

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 186/419 (44%), Gaps = 50/419 (11%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM---VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
           Y  +   L ++  F+ M  L +EM    H     GI     ++ VI+   +A  ++ +  
Sbjct: 3   YARVIVGLAKAWQFEQMWDLMEEMDKRAHLHIPAGI-----FSTVIKCYGRAGDVKGAVA 57

Query: 257 CFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
             K++ D   C    ++Y  L+ + ++ G    A  +Y +M       D  TY L+    
Sbjct: 58  TLKRMSDDFSCTPVARTYEALIRVVMDAGQCDTALSVYRAMA------DRVTYNLVALGC 111

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            +SGRLD  ++++QEM+ R FR S   F SLV  + KAGR D +  V  +      RPSA
Sbjct: 112 CRSGRLDTCVEIYQEMRSRGFRVSHLAFNSLVCGLCKAGRTDEAWDVLGK-----SRPSA 166

Query: 376 ---PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
               + +S +     +   D AL L   M+     PN   +T +I+   K+G+ D AM +
Sbjct: 167 CADAVTLSTVIHALCSSDCDRALELMRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVL 226

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M+ AG  P   TY+CL+     +G+++ A  L   M S G  P ++    L++ + K
Sbjct: 227 LQQMQAAGCSPNTVTYNCLIHSLCKAGKLEDAFALLRGMPSKGCTPSINNKNTLVSGICK 286

Query: 493 --------RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
                   R+   +   +  E     YSV+    D L ++     ++H        GS+G
Sbjct: 287 HAIMERQRREFGKLGQALFSEAMQESYSVE---EDTLALFYT--CLEH------MFGSNG 335

Query: 545 ----IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
                RT + ++  L   C  + + E+A+ +    V+   +VD V Y S L  L++  D
Sbjct: 336 DRPDKRTYSIVIHFL---CKADKVLEAAR-VWRAMVKRLGQVDAVTYNSFLYGLLKLND 390



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 155/365 (42%), Gaps = 41/365 (11%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGIS 233
           +D D +L L R  + Q    P    Y  + D L ++   D  + L  +M     S N ++
Sbjct: 183 SDCDRALELMRAMQAQR-VPPNVVTYTSVIDGLCKAGRRDAAMVLLQQMQAAGCSPNTVT 241

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF------------- 280
               YN +I  L KA KLE ++   + +    C     + N L++               
Sbjct: 242 ----YNCLIHSLCKAGKLEDAFALLRGMPSKGCTPSINNKNTLVSGICKHAIMERQRREF 297

Query: 281 --LNKGLPYKAFEIYESMEKGECSL----------------DGSTYELMIPSLAKSGRLD 322
             L + L  +A +   S+E+   +L                D  TY ++I  L K+ ++ 
Sbjct: 298 GKLGQALFSEAMQESYSVEEDTLALFYTCLEHMFGSNGDRPDKRTYSIVIHFLCKADKVL 357

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A ++++ M +R  +     + S +  + K   L  + +++ E+     +P+   Y  L+
Sbjct: 358 EAARVWRAMVKRLGQVDAVTYNSFLYGLLKLNDLSEAARLFSEID----KPTLVSYSLLV 413

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
            +Y KAG L     ++      G RP+  L+ +++   + + +      ++ +M   G  
Sbjct: 414 HAYFKAGDLSKVEEVYQAATGQGLRPDLALYNIVLHGLSGAKQEAGVAHLWAEMLNNGVS 473

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P+ +TY+ L+       ++ +A ++ + M   G+ P   TY  LL  L K +L+D A  +
Sbjct: 474 PSVATYTILIHALCRDNRLQAARQIIDKMKGQGVLPDAITYNTLLHCLCKNELLDEARLL 533

Query: 503 LLEMK 507
           L EMK
Sbjct: 534 LREMK 538



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 118/295 (40%), Gaps = 40/295 (13%)

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC-KIDTQSYNVLMTLFLNKGLP 286
            K G +LFS   +   Y  + D L + Y C + +  S+  + D ++Y++++         
Sbjct: 298 GKLGQALFSEAMQE-SYSVEEDTLALFYTCLEHMFGSNGDRPDKRTYSIVIHFLCKADKV 356

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +A  ++ +M K    +D  TY   +  L K   L  A +LF E+     +P+   ++ L
Sbjct: 357 LEAARVWRAMVKRLGQVDAVTYNSFLYGLLKLNDLSEAARLFSEID----KPTLVSYSLL 412

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           V +  KAG L    +VY    G G RP   +Y  ++   + A +      LW EM   G 
Sbjct: 413 VHAYFKAGDLSKVEEVYQAATGQGLRPDLALYNIVLHGLSGAKQEAGVAHLWAEMLNNGV 472

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP----------------------- 443
            P+   +T++I +  +  +L  A  I   M+  G LP                       
Sbjct: 473 SPSVATYTILIHALCRDNRLQAARQIIDKMKGQGVLPDAITYNTLLHCLCKNELLDEARL 532

Query: 444 -----------TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
                      TP+T++ +++          A ++++ +   G  P   TY A +
Sbjct: 533 LLREMKQHCSYTPATWNIVIDGILEQRDPGVAQRIFSQLIRDGFFPAHLTYDAFV 587



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 123/298 (41%), Gaps = 38/298 (12%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
           S+Y  +I  LAK+ + +    L +EM +R +      IF++++   G+AG +  ++    
Sbjct: 1   SSYARVIVGLAKAWQFEQMWDLMEEMDKRAHLHIPAGIFSTVIKCYGRAGDVKGAVATLK 60

Query: 365 EMQ---GCGHRPSAPMYVSLIE-----------------------------SYAKAGKLD 392
            M     C   P A  Y +LI                                 ++G+LD
Sbjct: 61  RMSDDFSC--TPVARTYEALIRVVMDAGQCDTALSVYRAMADRVTYNLVALGCCRSGRLD 118

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
           T + ++ EMR  GFR +   F  ++    K+G+ D A  +     R        T S ++
Sbjct: 119 TCVEIYQEMRSRGFRVSHLAFNSLVCGLCKAGRTDEAWDVLGK-SRPSACADAVTLSTVI 177

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
               SS   D A++L  +M +  + P + TYT+++  L K    D A  +L +M+  G S
Sbjct: 178 HALCSS-DCDRALELMRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVLLQQMQAAGCS 236

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            +    + L+    K G ++ A   LR M S G   +      L     K+A+ E  +
Sbjct: 237 PNTVTYNCLIHSLCKAGKLEDAFALLRGMPSKGCTPSINNKNTLVSGICKHAIMERQR 294


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 147/308 (47%), Gaps = 1/308 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I  L  A KL  +    K++L+    +D  +YN L+  F N+G     F + E M K
Sbjct: 469 NALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTK 528

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY  ++  L   G+LD AIKL+ E K      + + +  +++   KA R++ 
Sbjct: 529 RGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIED 588

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
              ++ E+       ++ +Y  +I+++ + G +  AL+L + M+  G  PN   ++ +I 
Sbjct: 589 VENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIH 648

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
                G ++ A  +  +M + GF+P    Y+ L+  +   GQ+D+A   +  M S  + P
Sbjct: 649 GVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHP 708

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWL 537
              TYT ++    K   ++ A  +L++MK  G   DV   +VL   + K   +D+A +  
Sbjct: 709 NKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVC 768

Query: 538 RFMGSSGI 545
             M + G+
Sbjct: 769 DQMATEGL 776



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 138/298 (46%), Gaps = 3/298 (1%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T   +I  L  +G+L  A ++ +EM ER        + +L+      G+++   ++  EM
Sbjct: 467 TSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEM 526

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G +P    Y  L+      GKLD A++LWDE + +G   N   + +++E + K+ ++
Sbjct: 527 TKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRI 586

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           +   ++F ++           Y+ +++ H  +G V +A++L  +M S G+ P  +TY++L
Sbjct: 587 EDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSL 646

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHA-LRWLRFMGSSG 544
           +  +    LV+ A  ++ EM+  G+  +V     L+  Y K G +D A   WL  M S  
Sbjct: 647 IHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLE-MISFN 705

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           I  N F    + +   K    E A  LL    ES    D+V Y  +     +  D  N
Sbjct: 706 IHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDN 763



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 144/308 (46%), Gaps = 2/308 (0%)

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           LP  +  + E +E+G   +D  TY  +I      G+++   +L +EM +R  +P    + 
Sbjct: 481 LPEASRIVKEMLERG-LPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYN 539

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
            L+  +   G+LD ++K++ E +  G   +   Y  ++E Y KA +++    L++E+   
Sbjct: 540 FLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSK 599

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
               N  ++ +II++H ++G +  A+ +  +M+  G LP  +TYS L+    + G V+ A
Sbjct: 600 KMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDA 659

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-V 523
             L + M   G  P +  YTAL+    K   +D A    LEM +     +     V++  
Sbjct: 660 KHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDG 719

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           Y K G+++ A   L  M  SGI  +      L     K    ++A  + +        VD
Sbjct: 720 YCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVD 779

Query: 584 LVLYTSVL 591
            + YT+++
Sbjct: 780 EITYTTLV 787



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 136/287 (47%), Gaps = 6/287 (2%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++    NE +  +G   L +EM    +K GI      YN +++ L    KL+ +   + +
Sbjct: 506 LILGFCNEGK-VEGCFRLREEM----TKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDE 560

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
              S    +  +Y ++M  +           ++  +   +  L+   Y ++I +  ++G 
Sbjct: 561 FKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGN 620

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           + AA++L + MK +   P+   ++SL+  +   G ++ +  +  EM+  G  P+   Y +
Sbjct: 621 VAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTA 680

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI  Y K G++DTA   W EM      PN   +T++I+ + K G ++ A ++   M+ +G
Sbjct: 681 LIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESG 740

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            +P   TY+ L      +  +D+A K+ + M + GL     TYT L+
Sbjct: 741 IVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 787



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 145/313 (46%), Gaps = 18/313 (5%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           K  E++  M +G C  D  ++  +I +L K G+++ AI+LF +M++    P+   +  ++
Sbjct: 204 KCCEVFRVMSEGACP-DVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCII 262

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           + + + GRLD + ++  +M   G +P+   Y +LI    K    D    + DEM  AGF 
Sbjct: 263 NGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFN 322

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           PN  +F  +I+ + K G ++ A+ I   M      PT  T   L++    S Q++ A   
Sbjct: 323 PNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENA 382

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-- 525
              + S+GL        +++  L K+     A         M  S +   SD+L+  +  
Sbjct: 383 LEEILSSGLSIHPDNCYSVVHWLCKKFRYHSA----FRFTKMMLSRNFRPSDLLLTMLVC 438

Query: 526 ---KDGSVDHALR-WLRFM--GSSGIR-TNNFIVRQLFESCMKNALYESAKPLLETYVES 578
              KDG    A   W R +  GS   + T+N ++  L   C    L E+++ +++  +E 
Sbjct: 439 GLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGL---CGAGKLPEASR-IVKEMLER 494

Query: 579 AAKVDLVLYTSVL 591
              +D + Y +++
Sbjct: 495 GLPMDRITYNALI 507



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 150/359 (41%), Gaps = 45/359 (12%)

Query: 239 NRVIQYLAKADKLEMSYCC--FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           N  +  L KA++ E   CC  F+ + +  C  D  S+  ++      G    A E++  M
Sbjct: 190 NFXLSSLVKANEFEK--CCEVFRVMSEGACP-DVFSFTNVINALCKGGKMENAIELFMKM 246

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           EK   S +  TY  +I  L ++GRLD A +L ++M  +  +P+   + +L++ + K    
Sbjct: 247 EKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFF 306

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D    +  EM G G  P+  ++ +LI+ Y K G ++ AL++ D M      P       +
Sbjct: 307 DKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSL 366

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   KS +++ A +   ++  +G    P     ++       +  SA +    M S   
Sbjct: 367 MQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNF 426

Query: 477 RP----------GLS-------------------------TYTALLTLLAKRKLVDVAAK 501
           RP          GL                          T  AL+  L     +  A++
Sbjct: 427 RPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASR 486

Query: 502 ILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR----TNNFIVRQL 555
           I+ EM   G  +D ++ + +++ +  +G V+   R    M   GI+    T NF++R L
Sbjct: 487 IVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGL 545



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 116/567 (20%), Positives = 205/567 (36%), Gaps = 121/567 (21%)

Query: 132 ASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQS 191
           A+A+  +  VV R++W     TQ   L     ++H+            ++ +F    R+ 
Sbjct: 132 ANALFGLTSVVGRFEW-----TQAFDL-----LIHVYSTQFRNLGFSCAVDVFYLLARKG 181

Query: 192 WYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251
            +     C   L  ++ ++ +F+    +F  M   +  +  S    +  VI  L K  K+
Sbjct: 182 TFPSLKTCNFXLSSLV-KANEFEKCCEVFRVMSEGACPDVFS----FTNVINALCKGGKM 236

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E +   F K+       +  +YN ++      G    AFE+ E M       +  TY  +
Sbjct: 237 ENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGAL 296

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L K    D    +  EM    F P+  +F +L+D   K G ++ ++K+   M     
Sbjct: 297 INGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNI 356

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG-------------------------- 405
            P++    SL++ + K+ +++ A    +E+  +G                          
Sbjct: 357 TPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFR 416

Query: 406 ---------FRPNFGLFTMIIESHAKSGK-LDIAMSIFTDMER----------------- 438
                    FRP+  L TM++    K GK L+     F  +E+                 
Sbjct: 417 FTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLC 476

Query: 439 -AGFLPTPS----------------TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
            AG LP  S                TY+ L+    + G+V+   +L   MT  G++P + 
Sbjct: 477 GAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIY 536

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM------------------- 522
           TY  LL  L     +D A K+  E K  G   ++    ++M                   
Sbjct: 537 TYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNEL 596

Query: 523 -----------------VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
                             + ++G+V  AL+ L  M S GI  N      L        L 
Sbjct: 597 LSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLV 656

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLA 592
           E AK L++   +     ++V YT+++ 
Sbjct: 657 EDAKHLIDEMRKEGFVPNVVCYTALIG 683


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 153/323 (47%), Gaps = 1/323 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +  +Y+VLM  F  +GL  + F++YE+M++     +   Y  +I      G +D A K+F
Sbjct: 227 NPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVF 286

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM+E+        +  L+  + +  +   ++K+  ++   G  P+   Y  LI  +   
Sbjct: 287 AEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDV 346

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            K+D+A+RL+++++ +G  P    +  +I  ++K   L  A+ +  +ME     P+  TY
Sbjct: 347 RKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTY 406

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++  A     + A ++++ M  +GL P + TY+ LL  L     +  A+K+   +  
Sbjct: 407 TILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGE 466

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
           M    + V  + ++  Y K+GS   ALR L  M  SG+  N            ++  ++ 
Sbjct: 467 MHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKE 526

Query: 568 AKPLLETYVESAAKVDLVLYTSV 590
           A+ LL   + S  K  + LY  V
Sbjct: 527 AELLLGQMINSGLKPSVSLYKMV 549



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 183/408 (44%), Gaps = 12/408 (2%)

Query: 190 QSWYVPGDECYVMLFD-VLN---ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245
           Q+ + P    Y  L+D V+N    S   D  L+    M+H+     + L + +N ++  L
Sbjct: 79  QAHFTPCST-YTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGH---VPLSNTFNNLLCLL 134

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
            +++  + ++  F + L S   +D  S+ +++      G   K F +   +E+   S + 
Sbjct: 135 IRSNYFDKAWWIFNE-LKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNV 193

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
             Y  +I    K G +  A  LF +M      P+ + ++ L++   K G      ++Y  
Sbjct: 194 VIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYEN 253

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M+  G  P+A  Y  LI  Y   G +D A +++ EMR  G       + ++I    +  K
Sbjct: 254 MKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKK 313

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
              A+ +   + + G  P   TY+ L+       ++DSA++L+N + S+GL P L TY  
Sbjct: 314 FGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNT 373

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
           L+   +K + +  A  ++ EM+    +   V+ + ++  + +    + A      M  SG
Sbjct: 374 LIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSG 433

Query: 545 IRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +  + +    L    C+   + E++K L ++  E   + + V+Y +++
Sbjct: 434 LVPDVYTYSVLLHGLCVHGNMKEASK-LFKSLGEMHLQPNSVIYNTMI 480



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 120/295 (40%), Gaps = 3/295 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           ++S  VP    Y  L          D    +F EM       G+     YN +I  L + 
Sbjct: 255 KRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVM---TYNILIGGLCRG 311

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K   +     KV       +  +YN+L+  F +      A  ++  ++    S    TY
Sbjct: 312 KKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTY 371

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I   +K   L  A+ L +EM+ER   PS   +  L+D+  +    + + +++  M+ 
Sbjct: 372 NTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEK 431

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P    Y  L+      G +  A +L+  +     +PN  ++  +I  + K G    
Sbjct: 432 SGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYR 491

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           A+ +  +M ++G +P  +++   + +     +   A  L   M ++GL+P +S Y
Sbjct: 492 ALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLY 546



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 5/223 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEM 253
           P    Y +L +   + R  D  + LF+++      +G+S     YN +I   +K + L  
Sbjct: 331 PNIVTYNILINGFCDVRKMDSAVRLFNQL----KSSGLSPTLVTYNTLIAGYSKVENLAG 386

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +    K++ +        +Y +L+  F       KA E++  MEK     D  TY +++ 
Sbjct: 387 ALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLH 446

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L   G +  A KLF+ + E + +P+  I+ +++    K G    ++++  EM   G  P
Sbjct: 447 GLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVP 506

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +   + S I    +  K   A  L  +M  +G +P+  L+ M+
Sbjct: 507 NVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549


>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Brachypodium distachyon]
          Length = 534

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 159/330 (48%), Gaps = 5/330 (1%)

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           SL   Y  ++  LAK     ++     ++      I +Q    L+  ++  G+  +A ++
Sbjct: 132 SLPELYASMMDLLAKHHHFPLARHLLDEMRKRSIPISSQVILALIRRYVRAGMSSEASDL 191

Query: 293 YESMEK-GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           + SME+ G    D +    ++ +L+K      A  LF   K   F P   ++ +LV +  
Sbjct: 192 FRSMEEYGGGVPDPAVLASLLGALSKKRLASEAQALFDSYKS-VFTPDVVLYTTLVHAWC 250

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           ++G LD + +V+ EMQ  G  P+   Y ++I++  +AG++  A  L  +M  +G  PN  
Sbjct: 251 RSGCLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTA 310

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ--VDSAMKLYN 469
            F  I+ +H K+G+ +  + +   M + G  P   TY+ L+E H   GQ  +D+AMKL  
Sbjct: 311 TFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKLLL 370

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
            M + G  P   T+  +L L+     VD A K+   M+ +    +V   ++LM ++ KD 
Sbjct: 371 KMIAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNVITYNLLMKLFGKDK 430

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
           S+D  LR  + M + G+  N      L E+
Sbjct: 431 SMDMVLRIKKDMDAQGVEPNVNTYGALIET 460



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 136/332 (40%), Gaps = 16/332 (4%)

Query: 123 GGIKKPFLNASAVAKIVEVVNRWKWGPELETQLD--KLQFVPKMVHITQALKVINDS--- 177
           GG+  P    + +A ++  +++ +   E +   D  K  F P +V  T  +     S   
Sbjct: 200 GGVPDP----AVLASLLGALSKKRLASEAQALFDSYKSVFTPDVVLYTTLVHAWCRSGCL 255

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +  +F    +Q+  +P    Y  + D +  +        L  +M+        + F  
Sbjct: 256 DKAEQVF-AEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATF-- 312

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY--KAFEIYES 295
            N +++   KA + E       ++    C  D  +YN LM     KG      A ++   
Sbjct: 313 -NAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKLLLK 371

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M    C+ D  T+  M+  +   G +DAA KL++ M+E   +P+   +  L+   GK   
Sbjct: 372 MIAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNVITYNLLMKLFGKDKS 431

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFT 414
           +D  +++  +M   G  P+   Y +LIE++   G    A     EM  +   +P   ++ 
Sbjct: 432 MDMVLRIKKDMDAQGVEPNVNTYGALIETFCGRGNWKRAYATLREMLEVKSLKPKKPVYD 491

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           M++    K+G+L     +   M   GF+  PS
Sbjct: 492 MVLVLLRKAGQLRKHEELVELMADRGFIKRPS 523


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 203/439 (46%), Gaps = 15/439 (3%)

Query: 159 QFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLS 218
           QF+  M ++ ++ KV N  D +L LF+        +P  + + +L  V+   + +   +S
Sbjct: 40  QFLISMRNLCKSGKVKN-IDEALDLFQGMASMK-PLPSVKDFTLLLGVIVRLKHYTTAIS 97

Query: 219 LFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           L     H  S  GI   +   N VI  L +   +   +     VL +  K+  +   + +
Sbjct: 98  LVK---HIFSSLGIEADTITLNIVINCLCRLKLVAFGF----SVLGTMFKLGLEPTVMTL 150

Query: 278 TLFLN----KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           T  +N    +G   +A  + + MEK    LD  TY ++I  L K+G   AA++  ++M+E
Sbjct: 151 TALINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEE 210

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           RN++P+  ++++++D + K G +  ++ +  EM G G RP+   Y  LI+     G+   
Sbjct: 211 RNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKE 270

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
              L DEM   G R +     +++++  K GK+  A S+   M   G  P   TY+ L+ 
Sbjct: 271 TGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIH 330

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
           ++    +++ AM++++ M S G  P +  +T+L+    K K ++    +L EM  MG+  
Sbjct: 331 IYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVP 390

Query: 514 DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           DV     L+  + + G    A      M   G   N      + +   K  L   A  L 
Sbjct: 391 DVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLA 450

Query: 573 ETYVESAAKVDLVLYTSVL 591
           E   +S   +++V+Y+ +L
Sbjct: 451 EAMEKSNLDLNIVIYSILL 469



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 140/323 (43%), Gaps = 5/323 (1%)

Query: 218 SLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           SL DEM+    K G+ L     N ++    K  K+  +      ++ +    D  +YN L
Sbjct: 273 SLLDEMI----KMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSL 328

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           + ++  +    +A  ++  M    C  D   +  +I    K   ++  + L +EM +  F
Sbjct: 329 IHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGF 388

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + +L+    +AGR   + ++++ M   G  P+      +++   K   L  A+ 
Sbjct: 389 VPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVS 448

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L + M  +    N  +++++++    +GKL+ A  +F+ +   G      TY+ +++   
Sbjct: 449 LAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLC 508

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G +D A  L  +M   G  P   TY   +  L  +K +  + K L  M+  G+SVD +
Sbjct: 509 KQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAA 568

Query: 517 ASDVLMVYIKDGSVDHALRWLRF 539
            +++ + Y+     D  +R   F
Sbjct: 569 TTEITINYLSTNEGDTRIREFFF 591



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 130/309 (42%), Gaps = 36/309 (11%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y  L+    N G   +   + + M K    LD  T  +++ +  K G++  A  +   M
Sbjct: 254 TYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFM 313

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
                 P    + SL+       +++ +M+V+  M   G  P   ++ SLI  + K   +
Sbjct: 314 ILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNI 373

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST---- 447
           +  + L +EM   GF P+   +T +I    ++G+   A  +F +M + G +P   T    
Sbjct: 374 NKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVI 433

Query: 448 -------------------------------YSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
                                          YS LL+   S+G++++A +L++S+   GL
Sbjct: 434 LDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGL 493

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALR 535
           +  + TYT ++  L K+  +D A  +L+ M+  G   D    +V +   +    +  +++
Sbjct: 494 QINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIK 553

Query: 536 WLRFMGSSG 544
           +L  M   G
Sbjct: 554 YLTIMRDKG 562



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 138/345 (40%), Gaps = 42/345 (12%)

Query: 304 DGSTYELMIPSLAKSGR---LDAAIKLFQEMKERNFRPSF-------------------- 340
           +G+ + + + +L KSG+   +D A+ LFQ M      PS                     
Sbjct: 37  NGTQFLISMRNLCKSGKVKNIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTTAI 96

Query: 341 ----NIFASL------------VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
               +IF+SL            ++ + +   +     V   M   G  P+     +LI  
Sbjct: 97  SLVKHIFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALING 156

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
               G +  A+ L D M    +  +   + ++I    K+G    A+     ME   + P 
Sbjct: 157 LCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPN 216

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
              YS +++     G V  A+ L + M+  G+RP L TY  L+  L           +L 
Sbjct: 217 VVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLD 276

Query: 505 EMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE-SCMKN 562
           EM  MG  +D+   ++L+  + K+G V  A   + FM  +G   + F    L    C++N
Sbjct: 277 EMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQN 336

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
            + E+ + +    V      D+V++TS++    + ++     HL+
Sbjct: 337 KMNEAMR-VFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLL 380


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 158/370 (42%), Gaps = 42/370 (11%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y  L+     +    KA  ++  M+K  C+ +  TY  ++  L ++G +  A+KL 
Sbjct: 165 DIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLH 224

Query: 329 QEMKER------NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
           QEM         NF+P    ++ ++D++ K  R D +  ++ EM+  G  P+   Y SLI
Sbjct: 225 QEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLI 284

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK----------------- 425
             +   GK + A RL++EM   G +PN   F ++I+   K GK                 
Sbjct: 285 HGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIV 344

Query: 426 ------------------LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
                             L+ A  +F  M   G  P    Y+ L+  +  + +V+ AMKL
Sbjct: 345 PNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKL 404

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-K 526
           YN M   G RP + TY ALLT L +   V  A K+   MK  G   D+    + +  + K
Sbjct: 405 YNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCK 464

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
           +G +  A+     + S  I+ +      L +   K    E+A  L E   +   + D+V 
Sbjct: 465 NGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVT 524

Query: 587 YTSVLAHLVR 596
           Y  ++    R
Sbjct: 525 YNIMIHEFCR 534



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 134/298 (44%), Gaps = 3/298 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           LF+EMV+   +  +  F   N +I  L K  K+  +    + ++      +  +YN L+ 
Sbjct: 299 LFNEMVNQGVQPNVVTF---NVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIE 355

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            F   G    A E++ SM    C  D   Y ++I    K+ +++ A+KL+  M +   RP
Sbjct: 356 GFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRP 415

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               + +L+  + + G++  + K++  M+  G      +Y   +    K G L  A+ L+
Sbjct: 416 DVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELF 475

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           ++++    + +   F  +I+   K+GKL+ A  +F  + +    P   TY+ ++      
Sbjct: 476 NKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRG 535

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           GQV  A  L+  M   G  P   TY  L+    + K ++   ++L  M     S+DV+
Sbjct: 536 GQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDVN 593



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 122/300 (40%), Gaps = 9/300 (3%)

Query: 316 AKSGRLDA--AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            K+G + A  A + F  M   N  P  + F  L+  + K         +Y +M+  G  P
Sbjct: 70  CKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
                  L+       ++   L +   +   G+ P+   +T +I+      ++  A  +F
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLF 189

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS------AGLRPGLSTYTALL 487
           T M++ G  P   TY  L++    +G +  A+KL+  M +         +P + +Y+ ++
Sbjct: 190 TRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIII 249

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
             L K +  D A  +  EMK  G +  V S + ++  +   G  + A R    M + G++
Sbjct: 250 DALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQ 309

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            N      L +   K      AK LLE  ++     +L+ Y S++       D  + R L
Sbjct: 310 PNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAREL 369



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 128/312 (41%), Gaps = 9/312 (2%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +AF+ +  M     +   S++  ++  LAK         L+ +M+     P       L+
Sbjct: 79  QAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           + +    R+   + V   +   G+ P    Y +LI+      ++  A  L+  M+  G  
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCT 198

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMER------AGFLPTPSTYSCLLEMHASSGQV 461
           PN   +  +++   ++G + IA+ +  +M          F P   +YS +++      + 
Sbjct: 199 PNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRE 258

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           D A  L+  M   G+ P + +YT+L+         + A ++  EM   G   +V   +VL
Sbjct: 259 DEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVL 318

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESA 579
           + V  K+G V  A   L  M   GI  N      L E  C+   L  SA+ L  +     
Sbjct: 319 IDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDL-NSARELFVSMPSKG 377

Query: 580 AKVDLVLYTSVL 591
            + D++ YT ++
Sbjct: 378 CEPDVICYTVLI 389



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 192 WYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           + +PGD   Y +  + L ++      + LF+++   + K  I  F   N +I  L KA K
Sbjct: 446 YGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECF---NCLIDGLCKAGK 502

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           LE ++  F+K+   + + D  +YN+++  F   G   KA  +++ MEK  C+ D  TY  
Sbjct: 503 LETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYAT 562

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           +I    +S +L+  ++L   M +R+     NI 
Sbjct: 563 LIRGFFESKKLEKVVELLHMMVQRDVSLDVNIL 595


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 146/331 (44%), Gaps = 32/331 (9%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA---------------------- 237
           Y +L D L+ +RD   + +LF+EM  ++    + L++A                      
Sbjct: 250 YTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECV 309

Query: 238 ----------YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
                     Y  +I    K  ++E +      +      ++   +N ++  +  KG+  
Sbjct: 310 GNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVD 369

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
            A +I  +MEK    LD  TY  +   L +  RLD A  L   M E    P++  + +L+
Sbjct: 370 DALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLI 429

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
               K G +  + +++ EM   G  PS   Y  +I+ Y K G +  A R   EM   GF 
Sbjct: 430 SIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFV 489

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+   +  ++  H  +GK+D+A+ +F +M++ G  P    Y+ L+   A  G+ ++A +L
Sbjct: 490 PDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQL 549

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
           Y+ M  AGL P  S Y+AL+  L      DV
Sbjct: 550 YDDMLKAGLIPDDSLYSALVGSLHTDNRKDV 580



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 162/361 (44%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           A + V+  L K+ +++ +      +      ++   YN L+  ++ +    +  EI E M
Sbjct: 179 AASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIM 238

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E         TY +++ SL+ +  +     LF EMK  N      ++ +++++  +AG +
Sbjct: 239 ENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNM 298

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + KV  E  G G  P+   Y  LI  + K G+++ A  L  +M+  G   N  +F  +
Sbjct: 299 RRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTM 358

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ + + G +D A+ I   ME+ G      TY+ L        ++D A  L + M   G+
Sbjct: 359 IDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGV 418

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P   TYT L+++  K   +  A ++  EM   G +  V   +V++  Y K GS+  A R
Sbjct: 419 VPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAER 478

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           + + M   G   + +    L      N   + A  L E   +   + ++V YT++++ L 
Sbjct: 479 FRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLA 538

Query: 596 R 596
           +
Sbjct: 539 K 539



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 101/204 (49%), Gaps = 1/204 (0%)

Query: 229 KNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
           K G+ L    YN +   L + ++L+ +      +++     +  +Y  L+++    G   
Sbjct: 380 KMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMV 439

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A  ++  M +   +    TY +MI    K G +  A +  +EM+++ F P    +ASLV
Sbjct: 440 EARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLV 499

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
                 G++D ++K++ EM+  G  P+   Y +LI   AK G+ + A +L+D+M  AG  
Sbjct: 500 HGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLI 559

Query: 408 PNFGLFTMIIESHAKSGKLDIAMS 431
           P+  L++ ++ S     + D+ +S
Sbjct: 560 PDDSLYSALVGSLHTDNRKDVKVS 583



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 40/289 (13%)

Query: 296 MEKGECSLDGSTYEL----MIPSLAKSGRLDAAIKLFQE--------------------- 330
           +E+   S  GS   L    ++  L KSGR+D A +L  +                     
Sbjct: 164 LERALGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYV 223

Query: 331 --------------MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
                         M+      +   +  LVDS+  A  +     ++ EM+         
Sbjct: 224 RQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVY 283

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
           +Y ++I +Y +AG +  A ++ DE    G  PN   + ++I    K G+++ A  +  DM
Sbjct: 284 LYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADM 343

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +  G       ++ +++ +   G VD A+K+  +M   G+   + TY  L   L +   +
Sbjct: 344 QGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRL 403

Query: 497 DVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
           D A  +L  M  MG   + V+ + ++ ++ KDG +  A R  R M   G
Sbjct: 404 DEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKG 452



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 138/301 (45%), Gaps = 6/301 (1%)

Query: 302 SLDGSTYELMIPSLAKSGRL-DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           SLD  +    + SL ++GRL DAA  L + +       S    + +VD + K+GR+D + 
Sbjct: 138 SLDPRSLTSSLLSLRRAGRLADAAGLLERALGSCPGSVSPLAASVVVDGLCKSGRVDDAR 197

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           ++  +M   G   +A  Y SL++ Y +         + + M   G     G +T++++S 
Sbjct: 198 RLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSL 257

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
           + +  +    ++F +M+    +     Y+ ++  +  +G +  A K+ +     G+ P  
Sbjct: 258 STARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNE 317

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRF 539
            TY  L+    K   ++ A  +L +M+  G  ++ +  + ++  Y + G VD AL+    
Sbjct: 318 RTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAA 377

Query: 540 MGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
           M   G+  + +    L    C  N L E AK LL   +E     + V YT++++  + C+
Sbjct: 378 MEKMGVELDIYTYNTLACGLCRVNRLDE-AKTLLHIMIEMGVVPNYVTYTTLIS--IHCK 434

Query: 599 D 599
           D
Sbjct: 435 D 435


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 135/276 (48%), Gaps = 3/276 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
            +LFDE+   + K  ++    Y  +I  + KA ++E +     ++      ++   YN L
Sbjct: 56  FALFDEL---TEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTL 112

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  +  +GL  +AF++   MEK     D  T   +   L K  + + A +    M E+  
Sbjct: 113 IDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGV 172

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   + +L+D   K G    + K++ EM+  G  P+A  Y  LI+ ++K G++  A  
Sbjct: 173 VPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYE 232

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L DEMR  G  P+   +T ++      GKLD A+ +F ++ + G      TY+ ++   +
Sbjct: 233 LRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLS 292

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
             G+ + A KLY+ MT AGL P    YT+L++ L K
Sbjct: 293 KEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHK 328



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 143/315 (45%), Gaps = 3/315 (0%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L D    S   D +  +F+EM     K  I +++    VI +  K    + ++  F 
Sbjct: 4   YTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTV---VINWNCKIGNTKRAFALFD 60

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++ +     +  +Y  L+      G    A  +   M+     ++   Y  +I    K G
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            +D A K+   M+++ F        ++ D + K  + + + +  + M   G  P+   Y 
Sbjct: 121 LIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYT 180

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI+ Y K G    A +L+ EM+ AG  PN   + ++I+ H+K G++  A  +  +M   
Sbjct: 181 TLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAK 240

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   TY+ LL      G++D A++L+N +   GL   + TYTA+++ L+K    + A
Sbjct: 241 GIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEA 300

Query: 500 AKILLEMKTMGYSVD 514
            K+  EM   G + D
Sbjct: 301 FKLYDEMTEAGLTPD 315



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 154/327 (47%), Gaps = 1/327 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + Y  +I +   + K++     F+++ +   K D   Y V++      G   +AF +++ 
Sbjct: 2   ATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDE 61

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           + +     +  TY  +I  + K+G ++AA  L  EM+ R    +  I+ +L+D   K G 
Sbjct: 62  LTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGL 121

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D + KV + M+  G         ++ +   K  + + A R    M   G  PN   +T 
Sbjct: 122 IDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTT 181

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+ + K G    A  +F +M++AG  P   TY+ L++ H+  G++  A +L + M + G
Sbjct: 182 LIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKG 241

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHAL 534
           + P + TYT+LL        +D A ++  E++  G  ++ V+ + ++    K+G  + A 
Sbjct: 242 IFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAF 301

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMK 561
           +    M  +G+  ++ +   L  S  K
Sbjct: 302 KLYDEMTEAGLTPDDRVYTSLVSSLHK 328



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 82/152 (53%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           SY  L+ ++  +G   +A ++++ M+K     +  TY ++I   +K GR+  A +L  EM
Sbjct: 178 SYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEM 237

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           + +   P    + SL+      G+LD +++++ E++  G   +   Y ++I   +K G+ 
Sbjct: 238 RAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRS 297

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
           + A +L+DEM  AG  P+  ++T ++ S  K+
Sbjct: 298 EEAFKLYDEMTEAGLTPDDRVYTSLVSSLHKA 329



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I    K      +   F+++  +  + +  +YNVL+     KG   +A+E+ + M
Sbjct: 178 SYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEM 237

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  ++      G+LD A++LF E++++    +   + +++  + K GR 
Sbjct: 238 RAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRS 297

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           + + K+Y EM   G  P   +Y SL+ S  KA
Sbjct: 298 EEAFKLYDEMTEAGLTPDDRVYTSLVSSLHKA 329


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 118/465 (25%), Positives = 207/465 (44%), Gaps = 29/465 (6%)

Query: 131 NASAVAKIVEVVNRWKW---GPELETQL-----DKLQFVPKMVHITQALKVINDSDTSLS 182
           NA  VA I+ V+ RW       E+ T+      D++Q    M+ +       + +   L 
Sbjct: 190 NARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELLD 249

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLS------LFDEMVHDSSKNGISLFS 236
               A RQ   VP     ++ F+ L  +R   G L+      L D MV +S     ++  
Sbjct: 250 ----AMRQRGCVPD----LISFNTLINARLKSGGLTPNLVVELLD-MVRNSGLRPDAI-- 298

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++   ++   LE +   F+ +    C+ D  +YN +++++   GL  +A  ++  +
Sbjct: 299 TYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIEL 358

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E    S D  TY  ++ + A+    +   +++Q+M++  F      + +++   GK G+L
Sbjct: 359 ELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQL 418

Query: 357 DTSMKVYMEMQG-CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           D ++++Y +M+G  G  P A  Y  LI+S  KA +   A  L  EM   G +P    ++ 
Sbjct: 419 DLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSA 478

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I  +AK+GK + A   F+ M R+G  P    YS +L++     +   A  LY  M S G
Sbjct: 479 LICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMISDG 538

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALR 535
             P  S Y  ++  L K    D   K + +M+ +     +  S VL   +K    D A R
Sbjct: 539 HTPSHSLYELMILGLMKENRSDDVQKTIRDMEELCGMNPLEISSVL---VKGECFDLAAR 595

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
            L+   ++G    N  +  +  S   +  +  A  LLE   E A+
Sbjct: 596 QLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHAS 640



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 125/550 (22%), Positives = 236/550 (42%), Gaps = 50/550 (9%)

Query: 269  DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
            D +++N LM+ +   G   +A  I+ +M +   S    +   ++ +L   GRL+    + 
Sbjct: 786  DLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVV 845

Query: 329  QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +E+++  F+ S +    ++D+  +AG +    K+Y  M+  G+ P+  +Y  +IE   K 
Sbjct: 846  EELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKG 905

Query: 389  GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
             ++  A  +  EM  A F+    ++  +++ +         + ++  ++ +G  P  +TY
Sbjct: 906  KRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTY 965

Query: 449  SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
            + L+ M+    + +    L   M + GL P L TY +L++   K+K ++ A ++  E+ +
Sbjct: 966  NTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLS 1025

Query: 509  MGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
             G  +D S    +M   +D GS   A + L+ M ++GI      +  L  S   +   + 
Sbjct: 1026 KGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQE 1085

Query: 568  AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN--ERHL------------------- 606
            A+ +L     +  ++  + Y+SV+   +R +D ++  ER L                   
Sbjct: 1086 AEKVLSNLKNTEVELTTLPYSSVIDAYLRSKDYKSGIERLLEMKKEGLEPDHRIWTCFVR 1145

Query: 607  MAILSATKHKAHAFLCGL----FTGPEQ----RKQPVLSFVREFFHGIDYELEEGAARYF 658
             A  S  K +    L  L    F  P +    R + ++S V   F  +   +E+ AA  F
Sbjct: 1146 AASFSKEKSEVMLLLKALQDIGFDIPIRLLGGRPELLVSEVDGCFEKLK-SIEDNAALNF 1204

Query: 659  VNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMH 718
             N LLN L        +  V+++A +  +F   +       W  D R LS GAAL A + 
Sbjct: 1205 ANALLNLLWAFELRATSSWVFQLAIKRGIFSLDVFRVADKDWGADFRRLSGGAALDASLE 1264

Query: 719  TLHRFRKRMLYYGVVPRRIKLVTGP------TLKIVIAQMLSSVESPFEVSKV---VLRA 769
                       Y   P+ + L+TG       +L   +   L  + SPF   K    +L A
Sbjct: 1265 G----------YPESPKSVVLITGTAEYNGVSLDKTLKACLWEMGSPFLPCKTRTGLLVA 1314

Query: 770  PGDSVMEWFK 779
               S+  W K
Sbjct: 1315 KAHSLRMWLK 1324



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 159/369 (43%), Gaps = 8/369 (2%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L +F W   + W+ P       +  VL          SL  E+   +          YN
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRW----NQESLAVEIFTRAEPTVGDRVQVYN 229

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG--LPYKAFEIYESME 297
            ++   +++ K   +      +    C  D  S+N L+   L  G   P    E+ + + 
Sbjct: 230 AMMGVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVR 289

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  TY  ++ + ++   L+ A+K+F++M+    +P    + +++   G+ G   
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAA 349

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + ++++E++  G  P A  Y SL+ ++A+    +    ++ +M+  GF  +   +  II
Sbjct: 350 EAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTII 409

Query: 418 ESHAKSGKLDIAMSIFTDMER-AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
             + K G+LD+A+ ++ DM+  +G  P   TY+ L++    + +   A  L + M   G+
Sbjct: 410 HMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGI 469

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P L TY+AL+   AK    + A      M   G   D  A  V++ V ++      A  
Sbjct: 470 KPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWV 529

Query: 536 WLRFMGSSG 544
             R M S G
Sbjct: 530 LYRDMISDG 538



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 36/254 (14%)

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
           G C    + YE ++     +     A ++F E++     PS ++  S+V    K G  +T
Sbjct: 675 GWCFGGSTMYETLLHCCVANEHYAEASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPET 734

Query: 359 SMKVYMEMQGCG-HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           + +V  + +  G H   +PMY  +IE+Y K      A  +   +R +G  P+   +  ++
Sbjct: 735 AYQVVNQAETKGFHFACSPMYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLM 794

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPT--------------------------------- 444
            ++A+ G  + A +IF  M R G  PT                                 
Sbjct: 795 SAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFK 854

Query: 445 --PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
              S+   +L+  A +G +    K+Y+SM +AG  P +  Y  ++ LL K K V  A  +
Sbjct: 855 ISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIM 914

Query: 503 LLEMKTMGYSVDVS 516
           + EM+   + V+++
Sbjct: 915 VSEMEEANFKVELA 928



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/339 (18%), Positives = 143/339 (42%), Gaps = 8/339 (2%)

Query: 258  FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-KG---ECSLDGSTYELMIP 313
            F ++  S C+        ++ ++   G P  A+++    E KG    CS     Y  +I 
Sbjct: 704  FSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQAETKGFHFACS---PMYTDIIE 760

Query: 314  SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            +  K      A  +   +++    P    + SL+ +  + G  + +  ++  M   G  P
Sbjct: 761  AYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSP 820

Query: 374  SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
            +      L+ +    G+L+    + +E++  GF+ +     +++++ A++G +     I+
Sbjct: 821  TVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVNKIY 880

Query: 434  TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            + M+ AG+LPT   Y  ++E+     +V  A  + + M  A  +  L+ + ++L +    
Sbjct: 881  SSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVI 940

Query: 494  KLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
            +      ++   +K  G   D +  + L++ Y +D   +     ++ M + G+       
Sbjct: 941  EDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTY 1000

Query: 553  RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            + L  +  K    E A+ L E  +    K+D   Y +++
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMM 1039



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 104/530 (19%), Positives = 195/530 (36%), Gaps = 114/530 (21%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L L++  K  S   P    Y +L D L ++       +L  EM+    K  +  +SA
Sbjct: 419 DLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSA 478

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES-- 295
              +I   AKA K E +   F  +L S  K D  +Y+V++ + L      KA+ +Y    
Sbjct: 479 ---LICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMI 535

Query: 296 ---------------------------------ME---------------KGEC------ 301
                                            ME               KGEC      
Sbjct: 536 SDGHTPSHSLYELMILGLMKENRSDDVQKTIRDMEELCGMNPLEISSVLVKGECFDLAAR 595

Query: 302 ----------SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
                      L+  T   ++ S + SGR   A +L + +KE        I  +L+    
Sbjct: 596 QLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLINEALIVLHC 655

Query: 352 KAGRLDTSMKVYMEMQGCGHR---PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
           K   +  ++  Y+    C H      + MY +L+           A +++ E+R++G  P
Sbjct: 656 KVNNIGAALDEYL-ADPCVHGWCFGGSTMYETLLHCCVANEHYAEASQVFSELRLSGCEP 714

Query: 409 NFG------------------------------------LFTMIIESHAKSGKLDIAMSI 432
           +                                      ++T IIE++ K      A S+
Sbjct: 715 SESVCKSMVVVYCKLGFPETAYQVVNQAETKGFHFACSPMYTDIIEAYGKLKLWQKAESV 774

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
             ++ ++G  P   T++ L+  +A  G  + A  ++N+M   G  P + +   LL  L  
Sbjct: 775 VGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCV 834

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMV---YIKDGSVDHALRWLRFMGSSGIRTNN 549
              ++    ++ E++ MG+   +S S +L++   + + G++    +    M ++G     
Sbjct: 835 DGRLEELYVVVEELQDMGFK--ISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTI 892

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
            + R + E   K      A+ ++    E+  KV+L ++ S+L      +D
Sbjct: 893 RLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIED 942



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 4/208 (1%)

Query: 236  SAYNRVIQYLAKADKLEMSYCCFKKV--LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
            + YN +I    +  + E  Y   +++  L  D K+DT  Y  L++ F  +    +A +++
Sbjct: 963  TTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDT--YKSLISAFGKQKCLEQAEQLF 1020

Query: 294  ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
            E +      LD S Y  M+     SG    A KL Q MK     P+      L+ S   +
Sbjct: 1021 EELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSS 1080

Query: 354  GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
            G    + KV   ++      +   Y S+I++Y ++    + +    EM+  G  P+  ++
Sbjct: 1081 GNPQEAEKVLSNLKNTEVELTTLPYSSVIDAYLRSKDYKSGIERLLEMKKEGLEPDHRIW 1140

Query: 414  TMIIESHAKSGKLDIAMSIFTDMERAGF 441
            T  + + + S +    M +   ++  GF
Sbjct: 1141 TCFVRAASFSKEKSEVMLLLKALQDIGF 1168


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 192/422 (45%), Gaps = 15/422 (3%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           C  ++  +    R  D  L LFD+M      +  + F ++  ++     A+ L+ S    
Sbjct: 147 CQQIIVVLCRSGRQADA-LQLFDQMTTHYGYSPDARFLSF--LVSSCTCANLLDASATLL 203

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES-MEKGECSLDGSTYELMIPSLAK 317
            K  +  C+++  +YN LM+  + +G  +    ++E  ++    S D  ++ ++I  + +
Sbjct: 204 SKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCR 263

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG-HRPSAP 376
            G++  A++L + M E    P       LVD + +   +    +V   +Q  G   P+  
Sbjct: 264 VGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVV 323

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            + S+I  Y KAGKL+ A+ ++++M  +G  PN   + ++I  + K G L  A+ ++  M
Sbjct: 324 TFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM 383

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            R    P   T+S L++ +   GQ+D A+++++ M    ++P + T++ ++  L K+   
Sbjct: 384 TRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRS 443

Query: 497 DVAAKILLEMKTMGYSVDVSA-----SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
           D A  +L E+       D++      + V+ V  K G VD A    + M   G R + + 
Sbjct: 444 DEAIGLLNELN---LRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYT 500

Query: 552 VRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
              L    CMK+ + E A       VE+    D +     ++ L++        H+M + 
Sbjct: 501 YTILIIGYCMKSRISE-AIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMRLA 559

Query: 611 SA 612
           S 
Sbjct: 560 SG 561


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 153/315 (48%), Gaps = 7/315 (2%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF-LNKGLPYKAFEIY 293
            S++N ++  L K+ ++EM+Y  FK  L    K D  SYN+++  + L K  P KA E+ 
Sbjct: 162 LSSFNTILDVLCKSKRVEMAYNLFK-ALKGKFKADCVSYNIIVNGWCLIKRTP-KALEML 219

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           + M +   + + +TY +M+    ++G+ + A   F EMK+R        + S++  +G  
Sbjct: 220 KEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVV 279

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G +  +  V+ +M   G  PS   + +LI+   K   ++ A+ +++EM   G+ PN   +
Sbjct: 280 GEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITY 339

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
            ++I      G++  AM +   ME     P   TY+ L+     +G+++  + L+  M +
Sbjct: 340 NLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGN 399

Query: 474 AGLRPGLSTYTALLTLLAKRKLVD---VAAKILLEMKTMGY-SVDVSASDVLMVYIKDGS 529
               P L TY  L+  +  RK  D   VA K+L+EM   G+    ++ + VL   +  G+
Sbjct: 400 GDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGN 459

Query: 530 VDHALRWLRFMGSSG 544
            D A   L   G  G
Sbjct: 460 QDFAKEILSLQGGCG 474



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 10/232 (4%)

Query: 147 WGPELETQLDKLQF-VPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFD 205
           WG  LE +  K    V     +   L V+ +   + ++F    +    +P    +  L  
Sbjct: 251 WGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDG-VLPSVATFNALIQ 309

Query: 206 VLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264
           +L +    +  + +F+EMV      N I+    YN VI+ L    +++ +    +++ D 
Sbjct: 310 ILCKKDSVENAILIFEEMVKRGYVPNSIT----YNLVIRGLCHVGEMQRAMELMERMEDD 365

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL---AKSGRL 321
           DC+ + Q+YN+L+  F + G   K  ++++ M  G+C  +  TY ++I S+     S  L
Sbjct: 366 DCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNL 425

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
             A KL  EM +R F P    F  ++D +   G  D + ++     GCG  P
Sbjct: 426 LVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGNQDFAKEILSLQGGCGRLP 477


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 159/369 (43%), Gaps = 33/369 (8%)

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           ++D  C+ D  ++ +L+          KA ++   M++  C  D + Y  +I   +K+  
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
              A K   EM + +  P+   + ++VD + KAGR   ++K+  EM+  G  P+   Y  
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNF--------GL-------------------- 412
           ++E   +  KLD A ++ +EM + G+ P+         GL                    
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTP 180

Query: 413 ----FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
               +T +I    KSG LD A  +   M   G  P   TYS L++     G+V+ AM L 
Sbjct: 181 DVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLL 240

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KD 527
           +SM   G RP +  Y +LL  L +   +  A  +L+EM+  G++ DV + +  +  + K 
Sbjct: 241 DSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKA 300

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
             V  A      M   G   N      L E   K    + A  L+E   E    VD++LY
Sbjct: 301 ERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLY 360

Query: 588 TSVLAHLVR 596
           T +L  L +
Sbjct: 361 TVLLDGLCK 369



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 156/346 (45%), Gaps = 7/346 (2%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           ++   VP D  Y  L    ++++DF        EMV +     +     Y  ++  L KA
Sbjct: 37  KEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHC---LPTVVTYTNIVDGLCKA 93

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            + + +     ++ D  C  +  +YNV++     +    +A ++ E M       D  TY
Sbjct: 94  GRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTY 153

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
              I  L K  R+D A K    M      P    + ++++ + K+G LD++ ++  +M  
Sbjct: 154 NSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTN 210

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P    Y SLI+ + K G+++ A+ L D M   G RPN   +  ++ +  + G +  
Sbjct: 211 RGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGK 270

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A  +  +MER GF P   +Y+  ++    + +V  A  +++ M   G  P  S+Y+ L+ 
Sbjct: 271 AEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVE 330

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
            L K+K +D A  ++ + +     VD+    VL+  + K G  D A
Sbjct: 331 ELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEA 376



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 135/299 (45%), Gaps = 4/299 (1%)

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           C  D  T+ +++  L +S +L+ A +L   MKE    P   I+ +L+    KA     + 
Sbjct: 6   CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAF 65

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           K   EM      P+   Y ++++   KAG+   A++L DEMR  G  PN   + +I+E  
Sbjct: 66  KFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGL 125

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            +  KLD A  +  +M   G+ P   TY+  ++      +VD A K    M    + P +
Sbjct: 126 CEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDV 182

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRF 539
            +YT ++  L K   +D A+++L +M   G + D V+ S ++  + K G V+ A+  L  
Sbjct: 183 VSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDS 242

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
           M   G R N      L  +  +      A+ +L          D+V Y + +  L + +
Sbjct: 243 MLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAE 301



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 153/342 (44%), Gaps = 13/342 (3%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  SYN  +          KA  +++ M +  C+ + S+Y +++  L K   LD AI L 
Sbjct: 286 DVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLV 345

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY---MEMQGCGHRPSAPMYVSLIESY 385
           ++ +E+       ++  L+D + K GR D +  ++   ++ + C   P    Y  +++S+
Sbjct: 346 EQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKIC--EPDVFFYNVMLDSH 403

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K  ++D AL++  +M +     N   + +++       +L  A ++   M   GF+P  
Sbjct: 404 CKRRQIDKALQIHKQM-LERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDF 462

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY  L++     G+  +A++L+      G  P + TY+AL+T L    + + A  +  +
Sbjct: 463 VTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTK 522

Query: 506 MKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNAL 564
           +    ++       +++ Y ++GS D  L+    +  S +  N     +++    +K   
Sbjct: 523 LDVALWNA------MILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAES 576

Query: 565 YESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
              A+ L +  V+     DL +  +++    +C D +  R +
Sbjct: 577 LGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRI 618



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 117/310 (37%), Gaps = 71/310 (22%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y ML + L + ++ D  ++L ++      K  I     Y  ++  L K  + + +
Sbjct: 320 PNASSYSMLVEELCKKKELDDAITLVEQA---REKYQIVDILLYTVLLDGLCKGGRFDEA 376

Query: 255 YCCFKKVLDSD-CKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMI 312
              F KVLD   C+ D   YNV++     +    KA +I++ M E+  C++   T+ +++
Sbjct: 377 CALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNV--VTWNILV 434

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L    RL  A  +   M +  F P F  + +LVD+M K G+   +++++ E    G  
Sbjct: 435 HGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCV 494

Query: 373 PSA------------------------------------------------PMYVSLIES 384
           P                                                   ++V LIES
Sbjct: 495 PDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLGLKLFVELIES 554

Query: 385 ----------------YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
                             KA  L  A  L+D     GF P+  +   +I+  AK G L+ 
Sbjct: 555 DVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEE 614

Query: 429 AMSIFTDMER 438
           A  IF  M++
Sbjct: 615 ARRIFYSMKQ 624



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 1/172 (0%)

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   T++ LL     S Q++ A +L   M   G  P  + Y AL++  +K K    A K 
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 503 LLEM-KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
           L EM K       V+ ++++    K G    A++ L  M   G   N +    + E   +
Sbjct: 68  LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
               + AK +LE         D+V Y S +  L +C      R  +A +  T
Sbjct: 128 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVT 179


>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 658

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 172/363 (47%), Gaps = 1/363 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I+ L    +L+ +   + ++     KI+ ++ N L++ +  K L  +  ++ +  
Sbjct: 221 SYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDA 280

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E     L   +Y L+I + +++GRLD A   F  MK  N   +  I++ L+ +   A + 
Sbjct: 281 EDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQW 340

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++++  +M     +P+  ++  LI++Y K G+L  A+R + +M   GF+P+   +  +
Sbjct: 341 DGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSL 400

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           IE+H ++G +  A+ +   M+    +P+  TY+ +L       +      L + M   GL
Sbjct: 401 IEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGL 460

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P + TYT L+      K    A++ L +MK+ G     S    L   Y K G  + A+ 
Sbjct: 461 DPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAME 520

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             + M   G+  N  ++  L  +      Y  A  + +  +E     D+V YT+++  L+
Sbjct: 521 VFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYILEVGMSPDVVTYTTLMKALI 580

Query: 596 RCQ 598
           + +
Sbjct: 581 KAE 583



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 185/450 (41%), Gaps = 76/450 (16%)

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSY------------- 255
           ESR  + ML LFD++       G     AYN ++   A+ D+LE +              
Sbjct: 91  ESRVEEAML-LFDQLKQLGVSPGPM---AYNAIVGTCAREDRLETALELMNQMRGSGFQP 146

Query: 256 ----------CCFKKVLDSDC-------------KIDTQSYNVLMTLFLNKGLPYKAFEI 292
                      C KK +  D              ++DT+ YN ++  +   G P KAF+ 
Sbjct: 147 DNVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRAGDPDKAFQY 206

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
              M+  +   D  +Y  +I +L    RLD A   + EMK ++++ +     +L+ +  +
Sbjct: 207 MGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTR 266

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA------------------ 394
              L+   K+  + +  G + S   Y  LI++Y++AG+LD A                  
Sbjct: 267 KSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFI 326

Query: 395 ----------LRLWD-------EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
                      R WD       +M  +  +PN  +F ++I+++ K G+L  AM  F  M+
Sbjct: 327 YSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMD 386

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           + GF P   T++ L+E H  +G +  A+ L   M      P L TY  +L  L       
Sbjct: 387 KEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWK 446

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
             A +L EM+  G   +V     L+  Y        A  +L+ M S G++ +  +   L 
Sbjct: 447 EMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALA 506

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVL 586
            S  K  L E A  + ++  +   +++L +
Sbjct: 507 NSYAKRGLCEQAMEVFKSMEKDGVELNLSM 536



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 160/402 (39%), Gaps = 81/402 (20%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI----SLFSAYNRVIQYLAKAD 249
           VP    Y  L + L   R  D   + + EM   S K  +    +L SAY R    L + +
Sbjct: 216 VPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTRK-SLLEQVE 274

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           KL       +   D+  K+ T SY +L+  +   G   +A   + +M+      +   Y 
Sbjct: 275 KL------MQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYS 328

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++ +   + + D  I+L ++M   N +P+  IF  L+D+ GK GRL  +M+ + +M   
Sbjct: 329 RLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKE 388

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRL----------------------------W--- 398
           G +P    + SLIE++ +AG +  AL L                            W   
Sbjct: 389 GFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEM 448

Query: 399 ----DEMRIAGFRPNFGLFTMIIESH---------------------------------- 420
               DEMR  G  PN   +T +++S+                                  
Sbjct: 449 ALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANS 508

Query: 421 -AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
            AK G  + AM +F  ME+ G     S  + L+     +G+   A  +++ +   G+ P 
Sbjct: 509 YAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYILEVGMSPD 568

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           + TYT L+  L K + +D    +  +M   G + D  A D+L
Sbjct: 569 VVTYTTLMKALIKAEQLDQVPDVYEQMVRAGCTPDDMAKDML 610



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 134/305 (43%), Gaps = 26/305 (8%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM----IP 313
           F K+  S C + T+    L+TL ++  +                  D  T +L+    I 
Sbjct: 47  FIKLCTSKCSVTTRK---LLTLLISSAV-----------------CDSETIDLLSAIAIT 86

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L+K  R++ A+ LF ++K+    P    + ++V +  +  RL+T++++  +M+G G +P
Sbjct: 87  GLSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALELMNQMRGSGFQP 146

Query: 374 SAPMYVSLIESYAKAG-KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
               Y  + ++ AK    +D   R+   +   G   +  L+  +I ++ ++G  D A   
Sbjct: 147 DNVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRAGDPDKAFQY 206

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M+    +P   +YS L+E      ++D A   Y  M S   +  L T  ALL+   +
Sbjct: 207 MGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTR 266

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
           + L++   K++ + +  G  +   +  +L+  Y + G +D A      M    +  N FI
Sbjct: 267 KSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFI 326

Query: 552 VRQLF 556
             +L 
Sbjct: 327 YSRLM 331



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 113/225 (50%), Gaps = 2/225 (0%)

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +  + K  R++ +M ++ +++  G  P    Y +++ + A+  +L+TAL L ++MR +GF
Sbjct: 85  ITGLSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALELMNQMRGSGF 144

Query: 407 RPNFGLFTMIIESHAKSG-KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
           +P+   +T++ ++ AK    +D+   +  ++E+ G       Y+ ++  +  +G  D A 
Sbjct: 145 QPDNVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRAGDPDKAF 204

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VY 524
           +    M +  L P + +Y++L+  L   + +D A     EMK+  Y +++   + L+  Y
Sbjct: 205 QYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAY 264

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            +   ++   + ++    +G++ + F    L ++  +    + AK
Sbjct: 265 TRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAK 309


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 164/357 (45%), Gaps = 1/357 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++  L KA++++MSY  F  +       D   ++ ++  F   G    A E++  MEK
Sbjct: 166 NFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEK 225

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              + +  TY  +I  L K+GRLD A +  ++M++   +PS   +  L++ + K  R D 
Sbjct: 226 VGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDE 285

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  +  EM   G+ P+  +Y +LI+ Y + G + TAL++ D+M   G  PN      +I+
Sbjct: 286 ANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQ 345

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
            + KS +++ A  +  +M   G +    T++ ++       + DSA+     M     +P
Sbjct: 346 GYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKP 405

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWL 537
                T L++ L +      A ++   +   G++ +   S+ L+  + + GS + A + L
Sbjct: 406 NDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLL 465

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           + M   G+  ++     L  +C K    E    L E  V    + D+  Y  +L  L
Sbjct: 466 KEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGL 522



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 137/292 (46%), Gaps = 4/292 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +I    K  K+E  +   ++++    + D  +YN+L+    N G   +A  ++   
Sbjct: 479 SYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHEC 538

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +K     D  TY +MI    K+ R++   KLFQEM       +  ++ +L+ +  + G +
Sbjct: 539 KKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNM 598

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++  +M+  G   ++  Y SLI   +  G +D+A +L DEMR  G  PN   +T +
Sbjct: 599 REAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTAL 658

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I  + K G++    SI  +M      P   TY+ ++  H   G + +A KL N M   G+
Sbjct: 659 IGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGI 718

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG 528
            P   TY AL     K   ++ A K+   M T G S+D    D+    + DG
Sbjct: 719 VPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLD----DITYTTLIDG 766



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 145/321 (45%), Gaps = 1/321 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I  L +A   E +    K++L+    +D+ SYN L+     +G   + F++ E M +
Sbjct: 446 NALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVR 505

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY +++  L   G+++ A  L+ E K+    P    +  ++D   KA R++ 
Sbjct: 506 RGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEE 565

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
             K++ EM       +A +Y +LI +Y + G +  A RL D+MR  G       ++ +I 
Sbjct: 566 GEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIH 625

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
             +  G +D A  +  +M + G  P    Y+ L+  +   GQ+     +   M+   + P
Sbjct: 626 GLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHP 685

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWL 537
              TYT ++    K   +  AAK+L EM   G   D    + L   + K+G ++ AL+  
Sbjct: 686 NKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVC 745

Query: 538 RFMGSSGIRTNNFIVRQLFES 558
             M + GI  ++     L + 
Sbjct: 746 DLMSTGGISLDDITYTTLIDG 766



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 171/381 (44%), Gaps = 6/381 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAY-NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           FD  L    EM+  + K    L +   + + Q   +++ +E+ Y    ++L+     +T 
Sbjct: 388 FDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWY----RLLEKGFAANTV 443

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           + N L+      G   +A ++ + M +    LD  +Y  +I +  K G+++   KL +EM
Sbjct: 444 TSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEM 503

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             R  +P    +  L+  +   G+++ +  ++ E +  G+ P A  Y  +I+ Y KA ++
Sbjct: 504 VRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRV 563

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           +   +L+ EM       N  ++  +I ++ ++G +  A  +  DM   G   T +TYS L
Sbjct: 564 EEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSL 623

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG- 510
           +   ++ G VDSA +L + M   GL P +  YTAL+    K   +     IL EM     
Sbjct: 624 IHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNV 683

Query: 511 YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           +   ++ + ++  + K G++  A + L  M   GI  +      L     K    E A  
Sbjct: 684 HPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALK 743

Query: 571 LLETYVESAAKVDLVLYTSVL 591
           + +        +D + YT+++
Sbjct: 744 VCDLMSTGGISLDDITYTTLI 764



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 182/437 (41%), Gaps = 18/437 (4%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T   ++ SL K+  +  + ++F  M      P   +F+++V++    GR+D +++++ +M
Sbjct: 164 TCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKM 223

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G  P+   Y ++I    K G+LD A +  ++M     +P+   + ++I    K  + 
Sbjct: 224 EKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERF 283

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           D A  I  +M   G+ P    Y+ L++ +   G + +A+++ + M S G+ P   T  +L
Sbjct: 284 DEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSL 343

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           +    K   ++ A  +L EM T G  ++    + V+         D AL ++  M     
Sbjct: 344 IQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNF 403

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
           + N+ ++  L     +N     A  L    +E     + V   +++  L  C+    E  
Sbjct: 404 KPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGL--CEAGSKEE- 460

Query: 606 LMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAAR-------YF 658
                 A K        GL          +L+  +E      ++L+E   R       Y 
Sbjct: 461 ------AAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYT 514

Query: 659 VNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMH 718
            N+LL+ L  MG+I  A  +W    +N  FP A  +   I        +  G  L   M 
Sbjct: 515 YNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMV 574

Query: 719 TLHRFRKRMLYYGVVPR 735
           T+ +  +  + YG + R
Sbjct: 575 TM-KIEQNAVVYGTLIR 590



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 183/436 (41%), Gaps = 43/436 (9%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY-NRVIQYLAKADKL 251
           Y P +  Y  L D      +    L + D+M+     NGIS  S   N +IQ   K++++
Sbjct: 298 YAPNNVVYNTLIDGYCRIGNISTALQIRDDMI----SNGISPNSVTCNSLIQGYCKSNQM 353

Query: 252 EMSYCCFKKVLDSD------------------CKIDT-------------QSYNVLMTLF 280
           E +    +++L                     C+ D+             +  + L+TL 
Sbjct: 354 EHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLL 413

Query: 281 LN----KGLPYKAFEI-YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           ++     G   +A E+ Y  +EKG  + +  T   +I  L ++G  + A KL +EM ER 
Sbjct: 414 VSGLCQNGKQSEAIELWYRLLEKGFAA-NTVTSNALIHGLCEAGSKEEAAKLLKEMLERG 472

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
                  + +L+ +  K G+++   K+  EM   G +P    Y  L+      GK++ A 
Sbjct: 473 LVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAG 532

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            LW E +  G  P+   + ++I+ + K+ +++    +F +M           Y  L+  +
Sbjct: 533 GLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAY 592

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             +G +  A +L + M S G+    +TY++L+  L+   LVD A ++L EM+  G S +V
Sbjct: 593 CENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNV 652

Query: 516 SASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
                L+  Y K G +      L+ M  + +  N      +     K    ++A  LL  
Sbjct: 653 VCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNE 712

Query: 575 YVESAAKVDLVLYTSV 590
             +     D V Y ++
Sbjct: 713 MAQKGIVPDAVTYNAL 728


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 175/427 (40%), Gaps = 39/427 (9%)

Query: 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV 224
            H+   L V    D ++ LF   K    + P    Y +L   L  S      L+L  EM 
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECF-PTVRTYTVLIKSLCGSERKSEALNLVKEME 350

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
               K  I     Y  +I  L    K E +     ++L+     +  +YN L+  +  +G
Sbjct: 351 ETGIKPNIH---TYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           +   A ++ E ME  + S +  TY  +I    KS  +  A+ +  +M ER   P    + 
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYN 466

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           SL+D   ++G  D++ ++   M   G  P    Y S+I+S  K+ +++ A  L+D +   
Sbjct: 467 SLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  PN  ++T +I+ + K+GK+D A  +   M     LP   T++ L+    + G++  A
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
             L   M   GL+P +ST T L+  L                                  
Sbjct: 587 TLLEEKMVKIGLQPTVSTDTILIHRL---------------------------------- 612

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
           +KDG  DHA    + M SSG + +        ++  +      A+ ++    E+    DL
Sbjct: 613 LKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDL 672

Query: 585 VLYTSVL 591
             Y+S++
Sbjct: 673 FTYSSLI 679



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 103/498 (20%), Positives = 202/498 (40%), Gaps = 53/498 (10%)

Query: 145 WKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLF 204
           W   P L++ +  +   P   H++    +  D  T+L+   W  +   Y      Y  L 
Sbjct: 75  WHKSPSLKSMVSAIS--PS--HVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLL 130

Query: 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264
            +L  +     +  +   M+      G +L+     + + + K ++ E+ Y         
Sbjct: 131 TLLINNGYVGVVFKIRLLMIKSCDSVGDALYVL--DLCRKMNKDERFELKY--------- 179

Query: 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324
             K+    YN L+      GL  +  ++Y  M + +   +  TY  M+    K G ++ A
Sbjct: 180 --KLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEA 237

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
            +   ++ E    P F  + SL+    +   LD++ KV+ EM   G R +   Y  LI  
Sbjct: 238 NQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHG 297

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
              A ++D A+ L+ +M+     P    +T++I+S   S +   A+++  +ME  G  P 
Sbjct: 298 LCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPN 357

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TY+ L++   S  + + A +L   M   GL P + TY AL+    KR +++ A  ++ 
Sbjct: 358 IHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVE 417

Query: 505 EMKTMGYSVD-----------------------------------VSASDVLMVYIKDGS 529
            M++   S +                                   V+ + ++    + G+
Sbjct: 418 LMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
            D A R L  M   G+  + +    + +S  K+   E A  L ++  +     ++V+YT+
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA 537

Query: 590 VLAHLVRCQDEQNERHLM 607
           ++    +   + +E HLM
Sbjct: 538 LIDGYCK-AGKVDEAHLM 554



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 168/415 (40%), Gaps = 23/415 (5%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  + D L +S+  +    LFD +        + +++A   +I    KA K++ 
Sbjct: 494 VPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA---LIDGYCKAGKVDE 550

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++   +K+L  +C  ++ ++N L+      G   +A  + E M K       ST  ++I 
Sbjct: 551 AHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIH 610

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K G  D A   FQ+M     +P  + + + + +  + GRL  +  +  +M+  G  P
Sbjct: 611 RLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSP 670

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES--HAKSGK------ 425
               Y SLI+ Y   G+ + A  +   MR  G  P+   F  +I+     K GK      
Sbjct: 671 DLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEP 730

Query: 426 ----------LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT-SA 474
                      D  + +   M      P   +Y  L+      G +  A K+++ M  + 
Sbjct: 731 ELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNE 790

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
           G+ P    + ALL+   K K  + AAK++ +M  +G+   + +  VL+  + K G  +  
Sbjct: 791 GISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERG 850

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
               + +   G   +    + + +   K  L E+   L     ++  K     Y+
Sbjct: 851 TSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYS 905



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 125/295 (42%), Gaps = 22/295 (7%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           DFD   S F +M+   +K     ++ +   IQ   +  +L  +     K+ ++    D  
Sbjct: 617 DFDHAYSRFQQMLSSGTKPDAHTYTTF---IQTYCREGRLLDAEDMMAKMRENGVSPDLF 673

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL--AKSGR--------- 320
           +Y+ L+  + + G    AF++ + M    C     T+  +I  L   K G+         
Sbjct: 674 TYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELC 733

Query: 321 -------LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ-GCGHR 372
                   D  ++L ++M E +  P+   +  L+  + + G L  + KV+  MQ   G  
Sbjct: 734 AMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGIS 793

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           PS  ++ +L+    K  K + A ++ D+M   G  P      ++I    K G+ +   S+
Sbjct: 794 PSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSV 853

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           F ++ + G+      +  +++     G V++  +L+N M   G +    TY+ L+
Sbjct: 854 FQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLI 908



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 112/261 (42%), Gaps = 22/261 (8%)

Query: 214 DGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           +G L   ++M+    +NG+S  LF+ Y+ +I+      +   ++   K++ D+ C+    
Sbjct: 650 EGRLLDAEDMMAKMRENGVSPDLFT-YSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQH 708

Query: 272 SYNVLMTLFL------NKGLPYK------------AFEIYESMEKGECSLDGSTYELMIP 313
           ++  L+   L       KG   +              E+ E M +   + +  +YE +I 
Sbjct: 709 TFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLIL 768

Query: 314 SLAKSGRLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            + + G L  A K+F  M +     PS  +F +L+    K  + + + KV  +M   GH 
Sbjct: 769 GICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHL 828

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P       LI    K G+ +    ++  +   G+  +   + +II+   K G ++    +
Sbjct: 829 PQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYEL 888

Query: 433 FTDMERAGFLPTPSTYSCLLE 453
           F  ME+ G   +  TYS L+E
Sbjct: 889 FNVMEKNGCKFSSQTYSLLIE 909


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 153/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +   +    +VP D C  +L + L + + F  +   +++++       +  F   N
Sbjct: 85  AIECYTLTREHKLWVPFDTCRKVL-EHLMKLKYFKLVWGFYEDILECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 141 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           + TYT ++    K+  V   +K+L EM+  G++  V   +VLM
Sbjct: 381 IGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 423



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 162/385 (42%), Gaps = 3/385 (0%)

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC--KIDTQSYNVLMTLFLNKGLPYKAFE 291
           +FS    +IQ +        +   F  +L++    + D   ++ L+T +L  G    A E
Sbjct: 28  MFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIE 87

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
            Y    + +  +   T   ++  L K          ++++ E  +  S   F  L+    
Sbjct: 88  CYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFC 147

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K G +  +  V+  +   G RPS   Y +L+  Y + G LD   RL   M  +G +P+  
Sbjct: 148 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 207

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            ++++I    K  K+D A  +F +M   G +P   T++ L++ H  +G+VD AM++Y  M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSV 530
            S  L P L TY  L+  L K+  +  A  ++ EM   G   D  + + ++    K+G +
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 327

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D A    + M    IR ++     L     +      A+ +L   +    K D+  YT +
Sbjct: 328 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMI 387

Query: 591 LAHLVRCQDEQNERHLMAILSATKH 615
           +    +  D      L+  +    H
Sbjct: 388 INEFCKKGDVWKGSKLLKEMQRNGH 412



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/287 (19%), Positives = 122/287 (42%), Gaps = 40/287 (13%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLDTA 394
           R    +F+ L+ +  ++G L  +++ Y   +   H+   P      ++E   K       
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYTLTRE--HKLWVPFDTCRKVLEHLMKLKYFKLV 120

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              ++++   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+  
Sbjct: 121 WGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 180

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +   G +D   +L ++M ++G++P + TY+ L+  L K   +D A ++  EM   G   +
Sbjct: 181 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPN 240

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V+ + ++  + K+G VD A+                I +Q+        L +S  P   
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAME---------------IYKQM--------LSQSLSP--- 274

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF 620
                    DL+ Y +++  L +  D +    L+  +S    K   F
Sbjct: 275 ---------DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 312


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 142/301 (47%), Gaps = 38/301 (12%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I    K DK+E ++  F K+++S+C  +  ++N L+  F   G+   A +++  ME
Sbjct: 246 YSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEME 305

Query: 298 KGECSLDGSTYELMIPSLAKS-GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           K  C     TY  +I SL K  G +  A+ LF +++     P+   + SL+     A RL
Sbjct: 306 KIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRL 365

Query: 357 DTSMKVYMEMQG----------------C------------------GHRPSAPMYVSLI 382
             +M+ + EM+G                C                  G+ P+   Y  LI
Sbjct: 366 SEAMQYFDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLI 425

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
             + K G+L +AL  +++M++AG  PN  +F  +I+   K+ + +  + +   M   G  
Sbjct: 426 NGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCK 485

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   TY+CL+    S+ +V+ A +L++ M  A   P ++T+  L+  L  +K V+ A  I
Sbjct: 486 PDVITYNCLISGLCSANRVEDAQRLFDGMACA---PNVTTFNFLIRGLCAQKKVEEARNI 542

Query: 503 L 503
           L
Sbjct: 543 L 543



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 178/387 (45%), Gaps = 11/387 (2%)

Query: 172 KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           K  N  + ++  F+  K  S   P  E Y +L   L++S       +LF  M        
Sbjct: 152 KSANRLEQAMEFFKEMK-ASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPD--- 207

Query: 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291
                 YN ++    K  +   +    K++L +  + +  +Y++++  +       +A+E
Sbjct: 208 ---IMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWE 264

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           ++  M +  C  +  T+  +I    K+G L+ AIKLF EM++   + +   + +L+DS+ 
Sbjct: 265 VFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLC 324

Query: 352 KA-GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
           K  G + T++ ++ +++G G  P+   Y SLI+ +  A +L  A++ +DEM      PN 
Sbjct: 325 KKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEME-GKCAPNV 383

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             ++++I+   K  ++  A     DM+  G+ PT  TY  L+      G++ SA+  +  
Sbjct: 384 ITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEK 443

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS- 529
           M  AG  P    +  L+  L K +  +   ++L  M   G   DV   + L+  +   + 
Sbjct: 444 MKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANR 503

Query: 530 VDHALRWLRFMGSS-GIRTNNFIVRQL 555
           V+ A R    M  +  + T NF++R L
Sbjct: 504 VEDAQRLFDGMACAPNVTTFNFLIRGL 530



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 141/321 (43%), Gaps = 11/321 (3%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L LF+       + P    Y +L     +       +S+F +M    S   +   S 
Sbjct: 14  DQALRLFKEV-LAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDM---KSSGLLPNAST 69

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            N ++  L +  ++  +   F+++        + S+N+L+  F   G    A    + M 
Sbjct: 70  MNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMR 129

Query: 298 KGECSLDGSTYELMIPSLA----KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           K   S+   TY L++  L      + RL+ A++ F+EMK     P    +  L+ ++  +
Sbjct: 130 KSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDS 189

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           GR+  +  ++  M      P    Y  L++ Y K G+   A  L  E+  AG+ PN   +
Sbjct: 190 GRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTY 246

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
           ++II  + K  K++ A  +F  M  +  +P   T++ L+     +G ++ A+KL+  M  
Sbjct: 247 SIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEK 306

Query: 474 AGLRPGLSTYTALLTLLAKRK 494
            G +  + TY  L+  L K++
Sbjct: 307 IGCKATIVTYNTLIDSLCKKR 327



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 143/314 (45%), Gaps = 8/314 (2%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A  +++ +  G  + +  TY ++I    K G++  A+ +F +MK     P+ +   +L+
Sbjct: 15  QALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLL 74

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
             + + G++ +++K++ EMQ     P++  +  L+  +  AG++  AL    +MR +   
Sbjct: 75  LGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSS 134

Query: 408 PNFGLFTMIIES----HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
              G + ++++     +  + +L+ AM  F +M+ +G  P   +Y  LL   + SG++  
Sbjct: 135 VATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAE 194

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLM 522
           A  L+++MT +   P + TY  L+    K      A  ++ E+   GY  +V + S ++ 
Sbjct: 195 AHALFSAMTCS---PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIIN 251

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            Y K   V+ A      M  S    N      L     K  + E A  L     +   K 
Sbjct: 252 CYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKA 311

Query: 583 DLVLYTSVLAHLVR 596
            +V Y +++  L +
Sbjct: 312 TIVTYNTLIDSLCK 325



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 163/359 (45%), Gaps = 9/359 (2%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++  L  A K + +   FK+VL      +  +YNVL+  F   G  ++A  ++  M+ 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                + ST   ++  L + G++ +A+KLF+EM+   F P+      L+     AGR+  
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYA----KAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++    +M+      +   Y  +++        A +L+ A+  + EM+ +G  P+   + 
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           +++ + + SG++  A ++F+ M  +   P   TY+ L++ +   GQ   A  L   +  A
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 237

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-KTMGYSVDVSASDVLMVYIKDGSVDHA 533
           G  P + TY+ ++    K   V+ A ++ ++M ++      V+ + ++  + K G ++ A
Sbjct: 238 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDA 297

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           ++    M   G +        L +S C K     +A  L      +     +V Y S++
Sbjct: 298 IKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLI 356



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 181/430 (42%), Gaps = 19/430 (4%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++  L  + + D A++LF+E+    F P+ + +  L+    K G++  ++ V+ +M+  G
Sbjct: 3   LLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSG 62

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P+A    +L+    + G++ +AL+L+ EM+   F P      +++     +G++  A+
Sbjct: 63  LLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDAL 122

Query: 431 SIFTDMERAGFLPTPSTYSCLLE----MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           +   DM ++       TY+ +L+     + S+ +++ AM+ +  M ++G+ P L +Y  L
Sbjct: 123 AHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHIL 182

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI 545
           L+ L+    +  A  +      M  S D+   +VLM  Y K G    A   ++ +  +G 
Sbjct: 183 LSALSDSGRMAEAHALF---SAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGY 239

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
             N F    +     K    E A  +    +ES    + V + +++A   +    ++   
Sbjct: 240 EPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIK 299

Query: 606 LMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNY 665
           L A +     KA             +K+  +    + F+ +     EGA      V  N 
Sbjct: 300 LFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKL-----EGAGLTPTIVTYNS 354

Query: 666 LVLMGQINRARCVWKVAY----ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLH 721
           L+  G  +  R    + Y    E K  P  I +   I     VR +   A  +  M   H
Sbjct: 355 LI-QGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKA-H 412

Query: 722 RFRKRMLYYG 731
            +   ++ YG
Sbjct: 413 GYTPTVVTYG 422


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 154/315 (48%), Gaps = 7/315 (2%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI--QYLAKADKL 251
           +P    Y +LFD L  + D   MLSLF E    S K G+ +  AY   I    L K  K+
Sbjct: 297 LPDGFTYSILFDGLTRTGDSRTMLSLFGE----SLKKGV-IIGAYTCSILLNGLCKDGKV 351

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
             +    + ++ +     T  YN L+  +        AF I+E M+      D  TY  +
Sbjct: 352 AKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNAL 411

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L K   +  A  L  EM++    PS   F +L+D+ G+AG+L+    V  +MQ  G 
Sbjct: 412 INGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGI 471

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           + +   + S+++++ K GK+  A+ + D+M      PN  ++  II+++ +SG  + A  
Sbjct: 472 KSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFL 531

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +   M+ +G   +  TY+ LL+    + Q+D A +L  ++T+ GLRP + +Y  +++   
Sbjct: 532 LVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACC 591

Query: 492 KRKLVDVAAKILLEM 506
            +   D A ++L EM
Sbjct: 592 NKGDTDRALELLQEM 606



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/442 (22%), Positives = 193/442 (43%), Gaps = 11/442 (2%)

Query: 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
           QA     D D +L++ R   R     P D   Y ++   L  S      L +FDEMV   
Sbjct: 166 QACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRG 225

Query: 228 -SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
            + N I+    YN +I    K   LE  +    ++L    K +  +YNVL++     G  
Sbjct: 226 VAPNQIT----YNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRM 281

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +   + + M       DG TY ++   L ++G     + LF E  ++         + L
Sbjct: 282 DETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSIL 341

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           ++ + K G++  + +V   +   G  P+  +Y +LI  Y +   L  A  ++++M+    
Sbjct: 342 LNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHI 401

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
           RP+   +  +I    K   +  A  +  +ME++G  P+  T++ L++ +  +GQ++    
Sbjct: 402 RPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFT 461

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM--KTMGYSVDVSASDVLMVY 524
           + + M   G++  + ++ +++    K   +  A  IL +M  K +  +  V  S ++  Y
Sbjct: 462 VLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNS-IIDAY 520

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
           I+ G  + A   +  M SSG+  + F    L +   KN+  + A+ L+        + D+
Sbjct: 521 IESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDV 580

Query: 585 VLYTSVLAHLVRCQDEQNERHL 606
           V Y ++++    C     +R L
Sbjct: 581 VSYNTIISAC--CNKGDTDRAL 600



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 127/294 (43%), Gaps = 3/294 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
            +  VP    Y  L +   + RD  G  S+F++M    S++       YN +I  L K +
Sbjct: 363 HTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQM---KSRHIRPDHITYNALINGLCKME 419

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            +  +     ++  S      +++N L+  +   G   K F +   M+      +  ++ 
Sbjct: 420 MITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFG 479

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++ +  K+G++  A+ +  +M  ++  P+  ++ S++D+  ++G  + +  +  +M+  
Sbjct: 480 SVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSS 539

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G   S   Y  L++   K  ++D A  L   +   G RP+   +  II +    G  D A
Sbjct: 540 GVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRA 599

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           + +  +M +    PT  TY  LL    S+G+V     LY  M    + P  S Y
Sbjct: 600 LELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIY 653



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 105/256 (41%), Gaps = 7/256 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +S   P  E +  L D    +   +   ++  +M     K+ +  F +   V++   K  
Sbjct: 433 KSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGS---VVKAFCKNG 489

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           K+  +      ++  D   + Q YN ++  ++  G   +AF + E M+    S    TY 
Sbjct: 490 KIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYN 549

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           L++  L K+ ++D A +L   +  +  RP    + +++ +    G  D ++++  EM   
Sbjct: 550 LLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKY 609

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
             RP+   Y  L+ +   AG++     L+  M      P+  ++    E+ +K   L   
Sbjct: 610 DIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCENESKVASLKKE 669

Query: 430 MS----IFTDMERAGF 441
           MS     F D ER   
Sbjct: 670 MSEKGIAFDDTERTNL 685



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 1/239 (0%)

Query: 216 MLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           M++  +++V +  K+G+      +N +I    +A +LE  +     + D   K +  S+ 
Sbjct: 420 MITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFG 479

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            ++  F   G   +A  I + M   +   +   Y  +I +  +SG  + A  L ++MK  
Sbjct: 480 SVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSS 539

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
               S   +  L+  + K  ++D + ++   +   G RP    Y ++I +    G  D A
Sbjct: 540 GVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRA 599

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           L L  EM     RP    +  ++ +   +G++     ++  M      P+ S Y    E
Sbjct: 600 LELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCE 658



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 112/276 (40%), Gaps = 11/276 (3%)

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R+  PS +    L++S+   GR       +  +   G RP    +   +++   AG LD 
Sbjct: 117 RSPLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDE 176

Query: 394 ALRLWDEM-RIAGFRPNFGL-FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           AL +   M R  G  P     + ++I    +SGK   A+ +F +M   G  P   TY+ +
Sbjct: 177 ALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTM 236

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++ H   G +++  +L + M   G +P + TY  LL+ L +   +D    ++ EM +   
Sbjct: 237 IDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSM 296

Query: 512 SVDVSASDVLMVYIKDG--SVDHALRWLRFMGSS---GIRTNNFIVRQLFESCMKNALYE 566
             D     +L     DG      +   L   G S   G+    +    L     K+    
Sbjct: 297 LPDGFTYSILF----DGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVA 352

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
            A+ +LE  V +       +Y +++    + +D Q 
Sbjct: 353 KAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQG 388


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 126/249 (50%)

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           +  D  +D  +YN LM  +       KA +I++SM       +  +Y  MI  L K   +
Sbjct: 307 MKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMV 366

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           D A+ LF+EM+ R   P+   + SL+D +GK G++   +K+  EM   G  P+   Y S+
Sbjct: 367 DEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSI 426

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           +++  K   +D A+ L   ++  G RP+   +T++I+   +SGKL+ A  +F D+   G+
Sbjct: 427 LDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGY 486

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
                TY+ +++     G  D+A+ L + M   G  P   TY  ++  L ++   D+A K
Sbjct: 487 NLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEK 546

Query: 502 ILLEMKTMG 510
           +L EM   G
Sbjct: 547 LLREMIARG 555



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 135/276 (48%), Gaps = 3/276 (1%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++++L+  F  +G   +A  +     K +  LD  TY  ++        ++ A  +F  M
Sbjct: 282 TFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSM 341

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             R    +   + ++++ + K   +D ++ ++ EM+     P+   Y SLI+   K GK+
Sbjct: 342 ASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKI 401

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
              L+L DEM   G  PN   +  I+++  K+  +D A+++ T+++  G  P   TY+ L
Sbjct: 402 SCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVL 461

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++    SG+++ A K++  +   G    + TYT ++     + L D A  +L +M+  G 
Sbjct: 462 IKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGC 521

Query: 512 SVDVSASDVLMVYI--KDGSVDHALRWLRFMGSSGI 545
             +    +++++ +  KD + D A + LR M + G+
Sbjct: 522 IPNAKTYEIVILSLFEKDEN-DMAEKLLREMIARGL 556



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/426 (19%), Positives = 180/426 (42%), Gaps = 40/426 (9%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           + ++S F+ ++H   KN       +N+++  L KA     +    +++  +    D  ++
Sbjct: 51  NNLISSFNSLLH--HKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTF 108

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N+L+  F   GL   +F ++  + K     +  T+  +I  L   G +  A+    ++  
Sbjct: 109 NILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVA 168

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA----- 388
           + F      + +L++ + K GR+  ++++   + G   +P+A MY  +I++  KA     
Sbjct: 169 QGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVND 228

Query: 389 ------------------------------GKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
                                         G+L  A+ L  +M +    P    F+++++
Sbjct: 229 AFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVD 288

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +  K GK+  A  +     +   +    TY+ L++ +    +++ A  +++SM S G+  
Sbjct: 289 AFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIA 348

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
            + +YT ++  L K K+VD A  +  EM+      +V   + L+  + K G +   L+ +
Sbjct: 349 NVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLV 408

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             M   G   N      + ++  KN   + A  LL    +   + D+  YT ++  L  C
Sbjct: 409 DEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGL--C 466

Query: 598 QDEQNE 603
           Q  + E
Sbjct: 467 QSGKLE 472



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 108/240 (45%), Gaps = 9/240 (3%)

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           +N+++D      +FD M   +S+  I+   +Y  +I  L K   ++ +   F+++     
Sbjct: 331 INKAKD------IFDSM---ASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKI 381

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
             +  +YN L+      G      ++ + M       +  TY  ++ +L K+  +D AI 
Sbjct: 382 IPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIA 441

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           L   +K++  RP    +  L+  + ++G+L+ + KV+ ++   G+      Y  +I+ + 
Sbjct: 442 LLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFC 501

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
             G  D AL L  +M   G  PN   + ++I S  +  + D+A  +  +M   G L   S
Sbjct: 502 VKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARGLLDEKS 561


>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 484

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 194/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E     GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQXXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVBSEKSAYNSLVQSXLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 484

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 194/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNX 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E     GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVBSEKSAYNSLVQSXLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   + E++       +  F   N
Sbjct: 77  AIECYRLTREHKFWVPFDTCKKVL-EHLMKLKYFKLVWGFYKEILECGYPASLYFF---N 132

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M   
Sbjct: 133 ILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS 192

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM ++   P+   F +L+D   K GR+D +
Sbjct: 193 GVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 252

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M           Y +LI    K G L  A  L DEMR+ G +P+   +T +I+ 
Sbjct: 253 MEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDG 312

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 313 CCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPD 372

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
             TYT ++    K+  V   +K+L EM+  G+
Sbjct: 373 TGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH 404



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 1/348 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T + ++  L K          +
Sbjct: 57  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCKKVLEHLMKLKYFKLVWGFY 116

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   + +L+  Y + 
Sbjct: 117 KEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRL 176

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G  P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 177 GDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTF 236

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L   L TY  L+  L K+  +  A  ++ EM+ 
Sbjct: 237 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRM 296

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A    + M    IR ++ +   L     +      
Sbjct: 297 KGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVD 356

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
           A+ +L   +    K D   YT ++    +  D      L+  +    H
Sbjct: 357 AEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH 404



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 146/319 (45%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  +E  F   F+    +++ + K     
Sbjct: 51  KGTLRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCKKVLEHLMKLKYFK 110

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G++  A  ++D +   G RP+   F  ++
Sbjct: 111 LVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLM 170

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 171 NGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLV 230

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 231 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNL 290

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L + C K    E+A    +  ++   ++D V+YT++++ L  
Sbjct: 291 IDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGL-- 348

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 349 CQEGRSVDAEKMLREMLSV 367



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 95/211 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD     +  ++  L+      G    A EIY+ M
Sbjct: 200 TYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 259

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM+ +  +P    + +L+D   K G L
Sbjct: 260 LSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDL 319

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R    +Y +LI    + G+   A ++  EM   G +P+ G +TMI
Sbjct: 320 ETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMI 379

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G +P+  T
Sbjct: 380 INEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 95/214 (44%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y+VL+     +     A E+++ M       +G T+  +I    K+GR+D A++++
Sbjct: 197 DVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 256

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           ++M  ++       + +L+  + K G L  +  +  EM+  G +P    Y +LI+   K 
Sbjct: 257 KQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKE 316

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+TA      M     R +  ++T +I    + G+   A  +  +M   G  P   TY
Sbjct: 317 GDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 376

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           + ++      G V +  KL   M   G  P + T
Sbjct: 377 TMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410


>gi|302763707|ref|XP_002965275.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
 gi|300167508|gb|EFJ34113.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
          Length = 445

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 152/325 (46%), Gaps = 3/325 (0%)

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           E    + + +C  +  +Y  +I +L  SGR+  A +  Q M +R   P+   + ++   +
Sbjct: 69  EAKSHLHRMDCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGL 128

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
           GKAG LD + ++   M+  G   +A  +  ++E   K+GK D A ++ + M +    PN 
Sbjct: 129 GKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNI 188

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
               +I+ +  K+ + + A+ +   M   GF PT  T++ LLE+  ++ Q+DSA +L  +
Sbjct: 189 LTLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLET 248

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGS 529
           M  +  +P   TY+ ++   A+   +  A   L ++   GY+ ++   +  +  + K G 
Sbjct: 249 MARSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGE 308

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +D A R+L  M   G R N      L E   K    + A+ +LE  +   +  D   Y+ 
Sbjct: 309 MDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSV 368

Query: 590 VLAHLVRCQDEQNERHLMAILSATK 614
           ++  L  C   Q     M +L  T+
Sbjct: 369 LIQGL--CSAGQIVHAFMVMLQVTR 391



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 140/309 (45%), Gaps = 5/309 (1%)

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
           D   N +S    YN +I  L  + +++ +    + +       +  +YN + T     GL
Sbjct: 78  DCKPNSVS----YNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGL 133

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +AFE+   ME    +L   T+  ++  L KSG+ D A K+ + M  RN  P+      
Sbjct: 134 LDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILTLNL 193

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           ++ +  KA R + ++ +   M   G  P+   + +L+E +    ++D+A  L + M  + 
Sbjct: 194 ILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLETMARSK 253

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +PNF  ++++++  A+ G++  A +    +   G+ P     +  +     +G++D A 
Sbjct: 254 CKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLAS 313

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
           +    M   G R   +TY +L+    K   +D A ++L EM   G   D +   VL+  +
Sbjct: 314 RFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGL 373

Query: 526 -KDGSVDHA 533
              G + HA
Sbjct: 374 CSAGQIVHA 382


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A  LF EM ++   P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G  P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M + GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 149/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +     RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+++G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLNVGLKPEIGTYTMIINEFCKKGD 396



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD     +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +   P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 115/272 (42%), Gaps = 36/272 (13%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           R    +F+ L+ +  ++G L  +++ Y   +    R        ++E   K         
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
            ++E    G+  +   F +++ S  K G++ +A S+F  + +    P+  +++ L+  + 
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYI 182

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-V 515
             G +D   +L N+M  +G++P + TY+ L+  L K   +D A  +  EM   G   + V
Sbjct: 183 KLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGV 242

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           + + ++  + K+G VD A+                I +Q+        L +S  P     
Sbjct: 243 TFTTLIDGHCKNGRVDLAME---------------IYKQM--------LSQSLSP----- 274

Query: 576 VESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
                  DL+ Y +++  L +  D +  + L+
Sbjct: 275 -------DLITYNTLIYGLCKKGDLKQAQDLI 299


>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 484

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 195/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E    +GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGILIENFCKAGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNLMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 183/431 (42%), Gaps = 15/431 (3%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           + D+ ++L+L R  +  S   P    Y  + D L +        +LF EM     K    
Sbjct: 230 MGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEM---QDKGIFP 286

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
               YN +I     + +   +    +++L+     +  +YN L+  F+ +G  ++A E+Y
Sbjct: 287 NIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELY 346

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           + M       +  TY  MI    K  RLDAA  +F  M  +   P    F +L+D    A
Sbjct: 347 DEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA 406

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
            R+D  M++  EM   G   +   Y +LI  +   G L+ AL L  +M  +G  P+    
Sbjct: 407 KRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTC 466

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERA-----------GFLPTPSTYSCLLEMHASSGQVD 462
             +++    +GKL  A+ +F  M+++           G  P   TY+ L+    + G+  
Sbjct: 467 NTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFL 526

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            A +LY  M   G+ P   TY++++  L K+  +D A ++ + M +  +S +V   + L+
Sbjct: 527 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586

Query: 523 -VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             Y K G VD  L     MG  GI  +  I   L     K      A  + +  + S   
Sbjct: 587 NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVY 646

Query: 582 VDLVLYTSVLA 592
            D +   ++L 
Sbjct: 647 PDTITIRNMLT 657



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 125/270 (46%), Gaps = 17/270 (6%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           DGM     E++H+  + G+   +  YN +I        L  +    ++++ S    D  +
Sbjct: 411 DGM-----ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT 465

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS-----------TYELMIPSLAKSGRL 321
            N L+    + G    A E++++M+K +  LD S           TY ++I  L   G+ 
Sbjct: 466 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKF 525

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             A +L++EM  R   P    ++S++D + K  RLD + ++++ M      P+   + +L
Sbjct: 526 LEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTL 585

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I  Y KAG++D  L L+ EM   G   +  ++  +I    K G ++ A+ IF +M  +G 
Sbjct: 586 INGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 645

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            P   T   +L    S  +++ A+ +   +
Sbjct: 646 YPDTITIRNMLTGFWSKEELERAVAMLEDL 675



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 151/379 (39%), Gaps = 48/379 (12%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C+ D  ++  LM     +G   +A  + + M +     D  TY   +  + K G   +A+
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 326 KLFQEMKE-RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH------------- 371
            L ++M+E  + +P+  I+++++D + K GR   S  +++EMQ  G              
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 372 ----------------------RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
                                  P+   Y +LI ++ K GK   A  L+DEM   G  PN
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              +  +I+   K  +LD A  +F  M   G  P   T++ L++ +  + ++D  M+L +
Sbjct: 358 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 417

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-G 528
            M   GL     TY  L+        ++ A  +  +M + G   D+   + L+  + D G
Sbjct: 418 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNG 477

Query: 529 SVDHALRWLRFMGSS-----------GIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
            +  AL   + M  S           G+  +      L    +    +  A+ L E    
Sbjct: 478 KLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH 537

Query: 578 SAAKVDLVLYTSVLAHLVR 596
                D + Y+S++  L +
Sbjct: 538 RGIVPDTITYSSMIDGLCK 556



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 91/170 (53%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN+L+   +N+G   +A E+YE M       D  TY  MI  L K  RLD A ++F
Sbjct: 508 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 567

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             M  ++F P+   F +L++   KAGR+D  ++++ EM   G    A +Y++LI  + K 
Sbjct: 568 VSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKV 627

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
           G ++ AL ++ EM  +G  P+      ++       +L+ A+++  D++R
Sbjct: 628 GNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQR 677



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 132/335 (39%), Gaps = 49/335 (14%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           L+DEM+    +  I     YN +I    K D+L+ +   F  +    C  D  ++  L+ 
Sbjct: 345 LYDEML---PRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLID 401

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +          E+   M +     +  TY  +I      G L+AA+ L Q+M      P
Sbjct: 402 GYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCP 461

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQG-------------------------CG--- 370
                 +L+D +   G+L  +++++  MQ                          CG   
Sbjct: 462 DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 521

Query: 371 ---------------HR---PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
                          HR   P    Y S+I+   K  +LD A +++  M    F PN   
Sbjct: 522 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT 581

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           F  +I  + K+G++D  + +F +M R G +     Y  L+      G ++ A+ ++  M 
Sbjct: 582 FNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMI 641

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           S+G+ P   T   +LT    ++ ++ A  +L +++
Sbjct: 642 SSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/352 (19%), Positives = 138/352 (39%), Gaps = 33/352 (9%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +N LM   +    P     +Y+ ME+ +   D  ++ ++I       +L  A+  F ++ 
Sbjct: 84  FNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLT 143

Query: 333 ERNF-------------------------------RPSFNIFASLVDSMGKAGRLDTSMK 361
           +                                  RP    F +L++ + + GR+  ++ 
Sbjct: 144 KLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVA 203

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFTMIIESH 420
           +   M   G +P    Y + ++   K G   +AL L  +M  I+  +PN  +++ II+  
Sbjct: 204 LLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGL 263

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K G+   + ++F +M+  G  P   TY+C++     SG+  +A +L   M    + P +
Sbjct: 264 CKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNV 323

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRF 539
            TY AL+    K      AA++  EM   G   + ++ + ++  + K   +D A      
Sbjct: 324 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYL 383

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           M + G   + F    L +        +    LL          + V Y +++
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 435



 Score = 43.1 bits (100), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           SY   G L+ A+ L+ +M  +   P+   F  ++ +  +  + D+ +S++  MER     
Sbjct: 56  SYEIKG-LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRC 114

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              +++ L++   S  ++  A+  +  +T  GL P + T+T LL  L     V  A  + 
Sbjct: 115 DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLF 174

Query: 504 LEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            ++       DV     LM  + ++G V  A+  L  M  +G++ +        +   K 
Sbjct: 175 HQI----CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKM 230

Query: 563 ALYESAKPLLETYVE-SAAKVDLVLYTSVLAHLVRCQD 599
               SA  LL    E S  K ++V+Y++++  L  C+D
Sbjct: 231 GDTVSALNLLRKMEEISHIKPNVVIYSAIIDGL--CKD 266


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 13/322 (4%)

Query: 197 DECY--VMLFDVLNESRDFDG----MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           D C   V+ + +L E+   +G     + L +EM+   ++  +     YN +I+ + K   
Sbjct: 201 DNCMPTVITYTILIEATIVEGGINEAMKLLEEML---ARGLLPDMYTYNAIIRGMCKEGM 257

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           +E +      +    CK D  SYN+L+  FLN+G   +  ++   M    C  +  TY +
Sbjct: 258 VERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSI 317

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV--YMEMQG 368
           +I SL + GR+D AI + + M E+   P    +  L+ ++ K GRLD ++ +  YM   G
Sbjct: 318 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNG 377

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           C   P    Y +++ +  K G  + AL +++++R  G  PN   +  +I +    G    
Sbjct: 378 C--LPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSR 435

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+ +   M   G  P   TY+ L+      G V+ A+ L + M  +G RP + +Y  +L 
Sbjct: 436 ALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLL 495

Query: 489 LLAKRKLVDVAAKILLEMKTMG 510
            L K + +D A  +  EM   G
Sbjct: 496 GLCKVRRIDDAIGMFAEMIEKG 517



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 159/357 (44%), Gaps = 4/357 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           ++P    Y ++   L   R     L + D+++ D   N +     Y  +I+       + 
Sbjct: 168 FLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLD---NCMPTVITYTILIEATIVEGGIN 224

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +    +++L      D  +YN ++     +G+  +A E+  S+    C  D  +Y +++
Sbjct: 225 EAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILL 284

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            +    G+ D   KL  EM  R   P+   ++ L+ S+ + GR+D ++ V   M      
Sbjct: 285 RAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELT 344

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y  LI +  K G+LD A+ + D M   G  P+   +  I+ +  K+G  + A+ I
Sbjct: 345 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 404

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  +   G  P  S+Y+ ++    S G    A+ +  +M S G+ P   TY +L++ L +
Sbjct: 405 FNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCR 464

Query: 493 RKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
             LV+ A  +L +M+  G+   V S + VL+   K   +D A+     M   G R N
Sbjct: 465 DGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPN 521



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 154/373 (41%), Gaps = 36/373 (9%)

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK-- 317
           ++L+S  + D  +YN +++ F        A ++   M+      D  TY +MI SL    
Sbjct: 127 EILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 186

Query: 318 ---------------------------------SGRLDAAIKLFQEMKERNFRPSFNIFA 344
                                             G ++ A+KL +EM  R   P    + 
Sbjct: 187 KLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYN 246

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +++  M K G ++ + ++   +   G +P    Y  L+ ++   GK D   +L  EM   
Sbjct: 247 AIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 306

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  PN   ++++I S  + G++D A+S+   M      P   +Y  L+      G++D A
Sbjct: 307 GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 366

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
           + + + M S G  P +  Y  +L  L K    + A +I  +++ MG   +VS+ + ++  
Sbjct: 367 IGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISA 426

Query: 525 I-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           +   G    AL  +  M S G+  +      L     ++ L E A  LL+   +S  +  
Sbjct: 427 LWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPT 486

Query: 584 LVLYTSVLAHLVR 596
           ++ Y  VL  L +
Sbjct: 487 VISYNIVLLGLCK 499



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 129/282 (45%), Gaps = 2/282 (0%)

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            K+G+ + ++   + +  + + P   +   L+        ++ + +V ME+      P  
Sbjct: 79  CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRV-MEILESHTEPDV 137

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y ++I  + K  +++ A ++ + M+  GF P+   + ++I S     KL +A+ +   
Sbjct: 138 FAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQ 197

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           +     +PT  TY+ L+E     G ++ AMKL   M + GL P + TY A++  + K  +
Sbjct: 198 LLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGM 257

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           V+ AA+++  + + G   DV + ++L+  ++  G  D   + +  M S G   N      
Sbjct: 258 VERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSI 317

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  S  +    + A  +L+  +E     D   Y  +++ L +
Sbjct: 318 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 359



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 115/237 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L +  +++ +    K +++ +   DT SY+ L++    +G    A  I + M
Sbjct: 314 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 373

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D   Y  ++ +L K+G  + A+++F +++     P+ + + +++ ++   G  
Sbjct: 374 ISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDR 433

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ +   M   G  P    Y SLI    + G ++ A+ L D+M  +GFRP    + ++
Sbjct: 434 SRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIV 493

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
           +    K  ++D A+ +F +M   G  P  +TY  L+E    +G    AM+L NS+ S
Sbjct: 494 LLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS 550


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/451 (21%), Positives = 193/451 (42%), Gaps = 35/451 (7%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           + D++ +L + R   + + +VP D  +  + DVL +    +  L + DE++    K  + 
Sbjct: 225 LRDANRALLVLR-KMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVV 283

Query: 234 LFS--------------------------------AYNRVIQYLAKADKLEMSYCCFKKV 261
           L +                                 Y  +I+   +    E +Y   +++
Sbjct: 284 LATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQM 343

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
            D      T  +N+++   LN  L   A  +++ M       D  TY ++I  L +  ++
Sbjct: 344 RDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRRKI 402

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             A+ L+++M E   +P    + SL+      G +D ++K+Y EM G G  P+   Y +L
Sbjct: 403 REALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTL 462

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           ++ +      D A  L  EM+  G   N   +  +I      G++     +    E  GF
Sbjct: 463 MKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGF 522

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +PT  TY+ ++     +G + SA  +Y  M + G+ P + TYT+ +    K    D+A K
Sbjct: 523 VPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALK 582

Query: 502 ILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +L +++  G   D++A + L+  + ++G++ HAL+ L  M   G+  N  +         
Sbjct: 583 MLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYK 642

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              + E A  L E  ++    +D   YT+++
Sbjct: 643 NLKMMEEALRLYEKMIKEGIDLDTATYTTLI 673



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/453 (23%), Positives = 192/453 (42%), Gaps = 31/453 (6%)

Query: 150 ELETQLDKLQFVPKMVHITQALK-VINDS--DTSLSLFRWAKRQSWYVPGDECYVMLFDV 206
           EL  Q+     +P        +K ++ND     ++SLF+        +P    Y +L   
Sbjct: 338 ELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSG--IPDAFTYNILIHW 395

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           L + R     L+L+++M    ++ G+           Y+     L + YC     +D   
Sbjct: 396 LCQRRKIREALNLWEKM----NETGVK---------PYIVTYHSLLLCYC-VNGCMDEAV 441

Query: 267 KIDTQ-----------SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
           K+ T+           +Y  LM   +NK    KA+ +   M++   S +  TY  +I  L
Sbjct: 442 KLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGL 501

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
              GR+    ++ +  +   F P+   + S+++   KAG + ++  VY +M   G  P+ 
Sbjct: 502 CVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNI 561

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y S I+ Y K    D AL++ +++R  G RP+   +  +I    + G +  A+ +   
Sbjct: 562 VTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVL 621

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M + G LP  S Y+  +  + +   ++ A++LY  M   G+    +TYT L+   +K   
Sbjct: 622 MLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGN 681

Query: 496 VDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           V  A K+  EM   G   D ++ + +     ++G +D A + L  M    IR N  +   
Sbjct: 682 VTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNM 741

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           L    ++N   + A  L +  +E     D   Y
Sbjct: 742 LINGYLRNGKLQEAFRLHDEMLERKIMPDDTTY 774



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 187/429 (43%), Gaps = 14/429 (3%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R    +P    + M+   L   + +   +SLF EM    + +GI     YN +I +L + 
Sbjct: 344 RDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEM----ADSGIPDAFTYNILIHWLCQR 399

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K+  +   ++K+ ++  K    +Y+ L+  +   G   +A ++Y  M     + +  TY
Sbjct: 400 RKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTY 459

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++         D A  L  EMK+     +   + +L++ +   GR+    ++    + 
Sbjct: 460 TTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFET 519

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+A  Y S+I  + KAG + +A  ++ +M   G  PN   +T  I+ + K+   D+
Sbjct: 520 EGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDL 579

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+ +  D+   G  P  + Y+ L+      G +  A+++   M   GL P +S Y + +T
Sbjct: 580 ALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFIT 639

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT 547
                K+++ A ++  +M   G  +D +    L+  + KDG+V  AL+    M + G   
Sbjct: 640 GYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIP 699

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV---------LAHLVRCQ 598
           ++     L     +N   + A+ LL+       + ++++Y  +         L    R  
Sbjct: 700 DHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLH 759

Query: 599 DEQNERHLM 607
           DE  ER +M
Sbjct: 760 DEMLERKIM 768



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 23/326 (7%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           FD   +L  EM     +NG+S     YN +I  L    ++       K+           
Sbjct: 472 FDKAYALLAEM----KQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAM 527

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN ++  F+  G+   AF +Y+ M       +  TY   I    K+   D A+K+  ++
Sbjct: 528 TYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDV 587

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           + +  RP    + SL+    + G +  +++V + M   G  P+  +Y S I  Y     +
Sbjct: 588 RCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMM 647

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + ALRL+++M   G   +   +T +I+  +K G +  A+ ++++M   G +P   T++ L
Sbjct: 648 EEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTAL 707

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT----------------LLAKRKL 495
                 +G +D A KL + M    +RP +  Y  L+                  + +RK+
Sbjct: 708 THGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKI 767

Query: 496 V--DVAAKILLEMKTMGYSVDVSASD 519
           +  D    IL+ MK++G    + A +
Sbjct: 768 MPDDTTYDILVGMKSLGSDSPIDAEN 793



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 132/327 (40%), Gaps = 35/327 (10%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           LD   +++++ +  K G  D A++LF EM      P   + +  + S+ K    + ++ V
Sbjct: 175 LDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLV 234

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
             +MQ  G  P    + S+++   K G+++ AL + DE+   G + +  L T ++  +  
Sbjct: 235 LRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCL 294

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS- 481
             ++  A+ IF +  R G +PT  TY+ L+      G  + A +L   M   GL P  + 
Sbjct: 295 QREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNE 354

Query: 482 ---------------------------------TYTALLTLLAKRKLVDVAAKILLEMKT 508
                                            TY  L+  L +R+ +  A  +  +M  
Sbjct: 355 FNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNE 414

Query: 509 MGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G     V+   +L+ Y  +G +D A++    M   G   N      L +  +  A ++ 
Sbjct: 415 TGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDK 474

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHL 594
           A  LL    ++    +   Y +++  L
Sbjct: 475 AYALLAEMKQNGVSCNDYTYNTLINGL 501


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 187/427 (43%), Gaps = 9/427 (2%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           P L+ + ++   V K   + + LK  +D   +L  F+       +      Y M+ + L 
Sbjct: 28  PNLKAENEEKSSVLKEADVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLA 87

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
             R+ D +  L  +M  +       LF +   VI    +A   E +   F ++ D   K 
Sbjct: 88  SEREMDCVQYLLQQMKLEGISCSEDLFIS---VIGSYRRAGSSEQALKTFYRMQDFRVKP 144

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
             + YN ++   L++        IY +M+K     +  TY +++ +L K+ R+D A KL 
Sbjct: 145 TVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLL 204

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM  +   P    + +L+ S+ K G++  + ++ M        PS P+Y +LI    K 
Sbjct: 205 VEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFT-----PSVPVYNALINGVCKE 259

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
              + A +L DEM   G  PN   +T II + + +G +++++++   M   G  P   T+
Sbjct: 260 YTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTF 319

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++     G    A+  ++ M   G+ P +  Y AL+  L  ++ +  A  +  +M+ 
Sbjct: 320 TSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEI 379

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   +V     L+  Y K G +D A     +M + G   N      + +   +N+++  
Sbjct: 380 NGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQ 439

Query: 568 AKPLLET 574
           A  L+E 
Sbjct: 440 AYCLIEN 446



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 153/347 (44%), Gaps = 6/347 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKL 251
           + P    Y  L + + +   F+    L DEM++     N IS    Y  +I  L+ A  +
Sbjct: 242 FTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVIS----YTTIINALSDAGNV 297

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E+S     K+    C  +  ++  L+  F  KG  ++A + ++ M +     +   Y  +
Sbjct: 298 ELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNAL 357

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           +  L     L  A+ +F +M+     P+   +++L+D   KAG LD + +V+  M   G 
Sbjct: 358 MHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGC 417

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+   Y  +++   +    + A  L + M++    PN   F   I+    SG++D A+ 
Sbjct: 418 HPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIK 477

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +F  M  +G  P  +TY+ LL+      +   A  L   M   G+   L TY  ++    
Sbjct: 478 VFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC 537

Query: 492 KRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL 537
              ++  A ++L +M   G   D ++ + V+  Y K G V+ A++ +
Sbjct: 538 CAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLM 584



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 136/294 (46%), Gaps = 3/294 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  L   L   R     +S+F++M  +     +  +SA   +I   AKA  L+ 
Sbjct: 348 VPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSA---LIDGYAKAGDLDG 404

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   +  ++   C  +  +Y  ++ +     +  +A+ + E+M+   C  +  T+   I 
Sbjct: 405 ASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIK 464

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L  SGR+D AIK+F +M      P+   +  L+DS+ K  R   +  +  +M+  G   
Sbjct: 465 GLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIEL 524

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y ++I  Y  AG L  AL L  +M + G +P+     ++I+++ K GK++IA+ + 
Sbjct: 525 NLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLM 584

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             +    + P    Y+ L+    +   V+ A+     M S G+ P ++T+  L+
Sbjct: 585 DRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLV 638



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 154/336 (45%), Gaps = 5/336 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L  +D M+ +     +    AYN ++  L     L  +   F ++  + C  + ++Y+ L
Sbjct: 336 LDFWDRMIREGV---VPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSAL 392

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  +   G    A E++  M    C  +   Y  M+  L ++   + A  L + M+  N 
Sbjct: 393 IDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENC 452

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   F + +  +  +GR+D ++KV+ +M   G  P+   Y  L++S  K  +   A  
Sbjct: 453 PPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFG 512

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +M   G   N   +  II  +  +G L  A+ +   M   G  P   T + +++ + 
Sbjct: 513 LVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYC 572

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G+V+ A++L + +++    P +  YT+L++ +     V+ A   L  M + G S +V+
Sbjct: 573 KQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVA 632

Query: 517 ASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
             +VL+ ++   ++ H+   ++F+ +S I    F+V
Sbjct: 633 TWNVLVRHLFS-NMGHS-GAVQFLDASSIMQPKFVV 666


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 183/431 (42%), Gaps = 15/431 (3%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           + D+ ++L+L R  +  S   P    Y  + D L +        +LF EM     K    
Sbjct: 230 MGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEM---QDKGIFP 286

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
               YN +I     + +   +    +++L+     +  +YN L+  F+ +G  ++A E+Y
Sbjct: 287 NIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELY 346

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           + M       +  TY  MI    K  RLDAA  +F  M  +   P    F +L+D    A
Sbjct: 347 DEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA 406

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
            R+D  M++  EM   G   +   Y +LI  +   G L+ AL L  +M  +G  P+    
Sbjct: 407 KRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTC 466

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERA-----------GFLPTPSTYSCLLEMHASSGQVD 462
             +++    +GKL  A+ +F  M+++           G  P   TY+ L+    + G+  
Sbjct: 467 NTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFL 526

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            A +LY  M   G+ P   TY++++  L K+  +D A ++ + M +  +S +V   + L+
Sbjct: 527 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586

Query: 523 -VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             Y K G VD  L     MG  GI  +  I   L     K      A  + +  + S   
Sbjct: 587 NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVY 646

Query: 582 VDLVLYTSVLA 592
            D +   ++L 
Sbjct: 647 PDTITIRNMLT 657



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 125/270 (46%), Gaps = 17/270 (6%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           DGM     E++H+  + G+   +  YN +I        L  +    ++++ S    D  +
Sbjct: 411 DGM-----ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT 465

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS-----------TYELMIPSLAKSGRL 321
            N L+    + G    A E++++M+K +  LD S           TY ++I  L   G+ 
Sbjct: 466 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKF 525

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             A +L++EM  R   P    ++S++D + K  RLD + ++++ M      P+   + +L
Sbjct: 526 LEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTL 585

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I  Y KAG++D  L L+ EM   G   +  ++  +I    K G ++ A+ IF +M  +G 
Sbjct: 586 INGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 645

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            P   T   +L    S  +++ A+ +   +
Sbjct: 646 YPDTITIRNMLTGFWSKEELERAVAMLEDL 675



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 151/379 (39%), Gaps = 48/379 (12%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C+ D  ++  LM     +G   +A  + + M +     D  TY   +  + K G   +A+
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 326 KLFQEMKE-RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH------------- 371
            L ++M+E  + +P+  I+++++D + K GR   S  +++EMQ  G              
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 372 ----------------------RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
                                  P+   Y +LI ++ K GK   A  L+DEM   G  PN
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              +  +I+   K  +LD A  +F  M   G  P   T++ L++ +  + ++D  M+L +
Sbjct: 358 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 417

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-G 528
            M   GL     TY  L+        ++ A  +  +M + G   D+   + L+  + D G
Sbjct: 418 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNG 477

Query: 529 SVDHALRWLRFMGSS-----------GIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
            +  AL   + M  S           G+  +      L    +    +  A+ L E    
Sbjct: 478 KLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH 537

Query: 578 SAAKVDLVLYTSVLAHLVR 596
                D + Y+S++  L +
Sbjct: 538 RGIVPDTITYSSMIDGLCK 556



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 90/169 (53%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN+L+   +N+G   +A E+YE M       D  TY  MI  L K  RLD A ++F
Sbjct: 508 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 567

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             M  ++F P+   F +L++   KAGR+D  ++++ EM   G    A +Y++LI  + K 
Sbjct: 568 VSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKV 627

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           G ++ AL ++ EM  +G  P+      ++       +L+ A+++  D++
Sbjct: 628 GNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 138/343 (40%), Gaps = 50/343 (14%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           L+DEM+    +  I     YN +I    K D+L+ +   F  +    C  D  ++  L+ 
Sbjct: 345 LYDEML---PRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLID 401

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +          E+   M +     +  TY  +I      G L+AA+ L Q+M      P
Sbjct: 402 GYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCP 461

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQG-------------------------CG--- 370
                 +L+D +   G+L  +++++  MQ                          CG   
Sbjct: 462 DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 521

Query: 371 ---------------HR---PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
                          HR   P    Y S+I+   K  +LD A +++  M    F PN   
Sbjct: 522 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT 581

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           F  +I  + K+G++D  + +F +M R G +     Y  L+      G ++ A+ ++  M 
Sbjct: 582 FNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMI 641

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK-TMGYSVD 514
           S+G+ P   T   +LT    ++ ++ A  +L +++ ++GY ++
Sbjct: 642 SSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQMSVGYQLE 684



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/352 (19%), Positives = 138/352 (39%), Gaps = 33/352 (9%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +N LM   +    P     +Y+ ME+ +   D  ++ ++I       +L  A+  F ++ 
Sbjct: 84  FNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLT 143

Query: 333 ERNF-------------------------------RPSFNIFASLVDSMGKAGRLDTSMK 361
           +                                  RP    F +L++ + + GR+  ++ 
Sbjct: 144 KLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVA 203

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFTMIIESH 420
           +   M   G +P    Y + ++   K G   +AL L  +M  I+  +PN  +++ II+  
Sbjct: 204 LLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGL 263

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K G+   + ++F +M+  G  P   TY+C++     SG+  +A +L   M    + P +
Sbjct: 264 CKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNV 323

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRF 539
            TY AL+    K      AA++  EM   G   + ++ + ++  + K   +D A      
Sbjct: 324 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYL 383

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           M + G   + F    L +        +    LL          + V Y +++
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 435



 Score = 42.7 bits (99), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
           SY   G L+ A+ L+ +M  +   P+   F  ++ +  +  + D+ +S++  MER     
Sbjct: 56  SYEIKG-LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRC 114

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              +++ L++   S  ++  A+  +  +T  GL P + T+T LL  L     V  A  + 
Sbjct: 115 DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLF 174

Query: 504 LEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
            ++       DV     LM  + ++G V  A+  L  M  +G++ +        +   K 
Sbjct: 175 HQI----CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKM 230

Query: 563 ALYESAKPLLETYVE-SAAKVDLVLYTSVLAHLVRCQD 599
               SA  LL    E S  K ++V+Y++++  L  C+D
Sbjct: 231 GDTVSALNLLRKMEEISHIKPNVVIYSAIIDGL--CKD 266


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 122/558 (21%), Positives = 233/558 (41%), Gaps = 52/558 (9%)

Query: 269  DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
            +T +Y+ L++ +   G   +A    ++M       + +    ++ +  ++G+     + F
Sbjct: 680  NTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFF 739

Query: 329  QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            Q + E    P+   F  +  +  + G L+ +  +Y +M+  G  PS  ++ +L+  Y++ 
Sbjct: 740  QRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRE 799

Query: 389  GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
                 A  L  +++ AG   +  ++  +I  ++K G    A  +F  M+  G  P  +T+
Sbjct: 800  TVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTF 859

Query: 449  SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
            + L+ +++ +  V  A  L   M   G  P +STYT L++   + +  + A  +   +  
Sbjct: 860  NTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAE 919

Query: 509  MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
             G   D +A +V++ VY K G        +  M   G   +   +  L +S  K      
Sbjct: 920  TGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGK 979

Query: 568  AKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQNERHLMAIL---------------- 610
            A+ +LET  E     D + YTS++ +HL       N+ +L A++                
Sbjct: 980  AEEVLETLPEIGMSPDAIHYTSIINSHL------NNKDYLSAVIWLRKMTDACVRPTHVT 1033

Query: 611  --------SATKHKAHAFLC------GLFTGPEQRKQPVLSFVREFFHGIDYELEEG--- 653
                    S  +  +HA +         F+ P +        V +    I  +L+E    
Sbjct: 1034 ITCFVGAASVCERSSHALMLLKALSEAGFSLPLRLMTECTPKVVQDMQDIFDQLQESGPE 1093

Query: 654  AARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
            A +  VNVL++ L    Q   A  V+ VA E+ ++ + +   +   W  D R LS GA+L
Sbjct: 1094 ACQGVVNVLMDLLWAFRQCATAALVFAVAIESNIYTQVLARVKDRNWGADFRRLSPGASL 1153

Query: 714  IAVMHTLHRFRKRMLYYGVVPRR--------IKLVTGPTLKIVIAQMLSSVESPFEVSKV 765
            +A++  L + +   L    VP +         KL    +++  I   L  + SPF  SK 
Sbjct: 1154 VALILWLDQMQDASLQGSPVPPKSIQIDIGSSKLNNQASVRNTIKAHLWQMGSPFLPSKT 1213

Query: 766  ---VLRAPGDSVMEWFKK 780
               VL A   ++  W K+
Sbjct: 1214 RAGVLVAKSHALCMWLKE 1231



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 168/378 (44%), Gaps = 7/378 (1%)

Query: 172 KVINDS-DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN 230
           +V N S   +L L+       WY P      ++  VL  +        LFD     S  N
Sbjct: 65  RVANTSWQRALELYECLNVARWYAPNPRMLAVMLSVLGRANQPGLAQELFDR-AESSIGN 123

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-A 289
            + ++++   V       + ++   C   ++ D  C+ D  ++N+++      G+    A
Sbjct: 124 CVQVYNSLMSVYARHGDWNSVQQLLC---RMQDRGCRPDLVTFNIVIKARTRGGMQEGLA 180

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
             + + +       D  TY  +I + + + RL  AI +F+EM+ +   P    + +++  
Sbjct: 181 SSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISV 240

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
            G+AGR++ +  ++  MQ  G  P A  Y S++ ++A+ G+++   R+   MR A    +
Sbjct: 241 YGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSD 300

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              +  +I  + K+G    A  ++  M+  G  P   T++ L++    +G V+ A  ++ 
Sbjct: 301 EITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFE 360

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
            M  + +RP L  ++A++   AK  +   A      M   G   D+ A  V++ V+ K G
Sbjct: 361 DMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAG 420

Query: 529 SVDHALRWLRFMGSSGIR 546
             +  +   + M  SG++
Sbjct: 421 MPEKCIILYKAMVGSGLK 438



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 149/298 (50%), Gaps = 2/298 (0%)

Query: 201 VMLFDVLNESRDFDGML-SLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           ++ F+++ ++R   GM   L   ++ D    G+   +  YN +I   +  ++L  +   F
Sbjct: 160 LVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIF 219

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +++    C  D  +YN +++++   G    A  I+  M++   + D  TY  ++ + A+ 
Sbjct: 220 EEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARD 279

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR++   ++   M++         + +++   GKAG    + ++Y++M+  G  P +  +
Sbjct: 280 GRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTF 339

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI++  KAG ++ A  ++++M  +  RP    F+ +I ++AK+     A   ++ M R
Sbjct: 340 TVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLR 399

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           AG  P    YS +L++   +G  +  + LY +M  +GL+P LS Y  ++ +  ++  V
Sbjct: 400 AGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSV 457



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 165/381 (43%), Gaps = 6/381 (1%)

Query: 215 GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD---SDCKIDTQ 271
           G  S  +E +  S   G    S + +V+  +A  D+  M      + LD      ++D +
Sbjct: 555 GRFSEAEEEMRTSQTYGQVQVSDFLKVL--VASYDRAGMQDEALARFLDMTTEGLEMDAE 612

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
                +  +  KG  + A E+           D + +  +I S  K      A  +F+++
Sbjct: 613 VLQTAVMCYCRKGFAFVAHELLIDCLHAFDVKDSAMHVAIIASYGKLKLWQNAEIVFRDL 672

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           ++  F  + + +++L+ +  + G  + + +    M   G +P+A     ++E++ +AGK 
Sbjct: 673 QQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKA 732

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
                 +  +   G  PN   F +I  + +++G L+ A S++  M+ AGF P+   +  L
Sbjct: 733 KEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKAL 792

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           L +++       A +L   +  AGL   +  Y  +++L +K      AA +   M+ +G 
Sbjct: 793 LALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGC 852

Query: 512 SVDVSASDVL-MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           S D +  + L M+Y ++  V  A   LR M  +G   N      L  +  +   YE A+ 
Sbjct: 853 SPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAEL 912

Query: 571 LLETYVESAAKVDLVLYTSVL 591
           + ++  E+  K D   Y  ++
Sbjct: 913 VFKSIAETGCKPDATAYNVMI 933



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 134/297 (45%), Gaps = 11/297 (3%)

Query: 195  PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA----YNRVIQYLAKADK 250
            P    +V++F   + + + +   S++ +M        I +F A    Y+R      + D 
Sbjct: 749  PNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSR---ETVEIDA 805

Query: 251  LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
             E+     K +  +  ++D   YN +++L+   G    A  +++ M++  CS D +T+  
Sbjct: 806  EEL----VKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNT 861

Query: 311  MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
            +I   +++  +  A  L +EM +    P+ + + +L+ + G+    + +  V+  +   G
Sbjct: 862  LIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETG 921

Query: 371  HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             +P A  Y  +I  Y KAG+      + ++M++ GF P+     M+++S+ K G    A 
Sbjct: 922  CKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAE 981

Query: 431  SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             +   +   G  P    Y+ ++  H ++    SA+     MT A +RP   T T  +
Sbjct: 982  EVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRPTHVTITCFV 1038



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 121/269 (44%), Gaps = 7/269 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLS----LFDEMVHDSSKNGISLFSAYNRVIQYL 245
           Q  Y  G     + ++ L  +   +  LS    +F+EM        I     YN +I   
Sbjct: 185 QDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIW---TYNAMISVY 241

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
            +A ++E +   F+ + +     D  +YN ++  F   G   +   I   M    CS D 
Sbjct: 242 GRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDE 301

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            TY  MI    K+G    A +L+ +MKE    P    F  L+D++GKAG ++ +  ++ +
Sbjct: 302 ITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFED 361

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M     RP+   + ++I +YAKA     A   +  M  AG RP+   ++++++   K+G 
Sbjct: 362 MLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGM 421

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            +  + ++  M  +G  P  S Y+ ++ +
Sbjct: 422 PEKCIILYKAMVGSGLKPELSVYAIMVRV 450



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 142/321 (44%), Gaps = 7/321 (2%)

Query: 275 VLMTLFLNKGLPYKAFEIYESMEK--GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           V++++      P  A E+++  E   G C      Y  ++   A+ G  ++  +L   M+
Sbjct: 96  VMLSVLGRANQPGLAQELFDRAESSIGNCV---QVYNSLMSVYARHGDWNSVQQLLCRMQ 152

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDT-SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           +R  RP    F  ++ +  + G  +  +  +  ++   G RP    Y +LI + +   +L
Sbjct: 153 DRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRL 212

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A+ +++EM+  G  P+   +  +I  + ++G+++ A SIF  M+  GF P   TY+ +
Sbjct: 213 SDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSV 272

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           L   A  G+++   ++   M  A       TY  ++ +  K  +   A ++ ++MK  G 
Sbjct: 273 LHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGR 332

Query: 512 SVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D     VL+  + K G V+ A      M  S +R        +  +  K  ++  A+ 
Sbjct: 333 CPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEH 392

Query: 571 LLETYVESAAKVDLVLYTSVL 591
                + +  + DL+ Y+ +L
Sbjct: 393 TYSCMLRAGVRPDLLAYSVML 413



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/311 (19%), Positives = 121/311 (38%), Gaps = 36/311 (11%)

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           SG+L  A  L   +       + +++  L   + KAGR   + +     Q  G    +  
Sbjct: 519 SGKLSDARDLVHAVSSIEPSVAAHLYKRLAVMLAKAGRFSEAEEEMRTSQTYGQVQVSDF 578

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGF---------------RPNF------------ 410
              L+ SY +AG  D AL  + +M   G                R  F            
Sbjct: 579 LKVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCL 638

Query: 411 --------GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
                    +   II S+ K      A  +F D+++ GF    S YS LL  +A +G  +
Sbjct: 639 HAFDVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFE 698

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            A +  ++M +AGL+P  +    +L    +       ++    +  MG S +     V+ 
Sbjct: 699 RATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIF 758

Query: 523 -VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             + ++G+++ A    R M  +G   +  + + L     +  +   A+ L++   ++  +
Sbjct: 759 HAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLE 818

Query: 582 VDLVLYTSVLA 592
           +D+ +Y  +++
Sbjct: 819 LDIDIYNHMIS 829


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  +LD A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L +EM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K++ EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLMKEMQRDGY 412



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 149/340 (43%), Gaps = 1/340 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L+   RL + M+ +G +P+   ++++I    K  KLD A  +F +M   G +P   ++
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H   G+VD AM++Y  M S  L P L TY  L+  L K   +  A  ++ EM  
Sbjct: 245 TTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
           A+ +L   +    K ++  YT ++    +  D      LM
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLM 404



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 146/319 (45%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  KE  FR  F+    +++ + K     
Sbjct: 59  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E   CG+  S   +  L+ S+ K G++  A  ++D +   G RP+   F  ++
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K G L+    +   M+ +G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 179 NGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   ++T L+    K   VD+A +I  +M +   S D+   + L+  + K+G +  A   
Sbjct: 239 PNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L +   K    E+A    +  ++   ++D V YT++++ L  
Sbjct: 299 INEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL-- 356

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 357 CQEGRSVDAEKMLREMLSV 375



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 96/211 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  KL+ +   F ++LD+    ++ S+  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K+G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 158/319 (49%), Gaps = 4/319 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I+   K  +L  +   +  +L++ C     +Y +L+  + N G  ++A  +   M 
Sbjct: 321 YNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMR 380

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     + + Y   +  L K+   + A++++Q MK    R +   F  +++  GKA +  
Sbjct: 381 EHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPM 440

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           +SMKV+ EM+  G +P+   Y +L+ ++A+ G  + A  +++EM+ AG  P+   +  ++
Sbjct: 441 SSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 500

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E+++++G    A  IF+ M+  G  P  ++Y+ L++ +  +G  + A  ++  +   G+ 
Sbjct: 501 EAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMS 560

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P + ++  LL   A+        +++ ++   G + D  A + ++  Y + G +D   R 
Sbjct: 561 PTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERL 620

Query: 537 LRFM---GSSGIRTNNFIV 552
           L  M   G + + T N  V
Sbjct: 621 LAAMERRGDADVGTYNVAV 639



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 153/321 (47%), Gaps = 2/321 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   YN+L+  +  K    KA  IY ++ + +C     TY L++ +   +G L  A  + 
Sbjct: 317 DIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVI 376

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM+E    P+  ++ + +D + KA   + +++VY  M+    R +   +  +I  Y KA
Sbjct: 377 SEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKA 436

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            +  +++++++EM+  G +PN   +T ++ + A+ G  + A  +F +M++AG  P    Y
Sbjct: 437 KQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAY 496

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+E ++ +G    A ++++ M   G  P  ++Y  L+    +  L + A  +  E+K 
Sbjct: 497 NALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQ 556

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G S  + +  +L+  + + G+       +  +  SG+  + F +  +  +  +    + 
Sbjct: 557 RGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDD 616

Query: 568 AKPLLETYVESAAKVDLVLYT 588
            + LL   +E     D+  Y 
Sbjct: 617 MERLLAA-MERRGDADVGTYN 636



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/369 (19%), Positives = 161/369 (43%), Gaps = 39/369 (10%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLE 252
           VP ++ Y +L      +    G L   + ++ +  ++GI    + YN  +  L KA   E
Sbjct: 350 VPTEDTYALLLRAYCNA----GSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTE 405

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   ++++    C+ +T+++ +++ ++     P  + +++  M+   C  +  TY  ++
Sbjct: 406 KAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALV 465

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            + A+ G  + A ++F+EM++    P    + +L+++  +AG    + +++  MQ  G  
Sbjct: 466 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCE 525

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y  L+++Y +AG  + A  +++E++  G  P      +++ +HA+SG       +
Sbjct: 526 PDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEV 585

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL--------------YNSMTSAGLRP 478
              + ++G  P     + +L  +A +G++D   +L              YN   +A  R 
Sbjct: 586 MAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRGDADVGTYNVAVNAYGRA 645

Query: 479 G--------------------LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G                    + T+TA +   A+RK       ++ EM   G   D   +
Sbjct: 646 GYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTA 705

Query: 519 DVLMVYIKD 527
            VL+    D
Sbjct: 706 RVLLAACSD 714


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 153/325 (47%), Gaps = 4/325 (1%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM--EKGECSLDGSTYELMIPSL 315
            +++    C  +  SYN+L+    ++    +A E+ + M  + G+C  D  +Y  +I   
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            K G LD A   + EM +R   P+   ++S++ ++ KA  +D +M+V   M   G  P+ 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y S++  Y  +G+   A+    +M   G  P+   +  +++   K+G+   A  +F  
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M + G  P  +TY  LL+ +A+ G +     L + M   G+ P    ++ L+   AK+  
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389

Query: 496 VDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           VD A  +  +M+  G + D V+   V+ +  K G V+ A+R+   M    +   N +   
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNS 449

Query: 555 LFES-CMKNALYESAKPLLETYVES 578
           L  S C+ +   ++    L+ ++E+
Sbjct: 450 LIHSLCIFDKWDKAKDYFLKCWIEA 474



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 2/287 (0%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++L  + +E+R  + +  L  +M+ D   +      +Y  VI    K   L+ +Y  + +
Sbjct: 167 ILLKGLCDENRSQEALELL--QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +LD     +  +Y+ ++          KA E+  SM K     +  TY  ++     SG+
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
              AI   ++M      P    + SL+D + K GR   + K++  M   G +P    Y +
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L++ YA  G L     L D M   G  PN  +F+++I ++AK GK+D AM +F+ M + G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             P   TY  ++ +   SG+V+ AM+ +  M    L PG   Y +L+
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLI 451



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 133/353 (37%), Gaps = 42/353 (11%)

Query: 286 PYKAFEIYESMEKG---ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +    E + +  TY ++I S   +GRLD        + ++ FR     
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIA 128

Query: 343 FASLVDSMGKAGRLDTSMKVY---MEMQGC------------------------------ 369
           F  L+  +    R   +M +    M   GC                              
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188

Query: 370 -----GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
                   P    Y ++I  + K G LD A   + EM   G  PN   ++ II +  K+ 
Sbjct: 189 PDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQ 248

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
            +D AM + T M + G +P   TY+ ++  + SSGQ   A+     M S G+ P + TY 
Sbjct: 249 AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSS 543
           +L+  L K      A K+   M   G   +++    +L  Y   G++      L  M  +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           GI  N+++   L  +  K    + A  +     +     D V Y +V+  L +
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 105/241 (43%), Gaps = 5/241 (2%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLE 252
           +P    Y  +   L +++  D  + +   MV    KNG+      YN ++     + + +
Sbjct: 231 LPNVVTYSSIIAALCKAQAMDKAMEVLTSMV----KNGVMPNCRTYNSIVHGYCSSGQPK 286

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +    KK+     + D  +YN LM      G   +A ++++SM K     + +TY  ++
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
              A  G L     L   M      P+  +F+ L+ +  K G++D +M V+ +M+  G  
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 406

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y ++I    K+G+++ A+R +++M      P   ++  +I S     K D A   
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDY 466

Query: 433 F 433
           F
Sbjct: 467 F 467


>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 168/351 (47%), Gaps = 8/351 (2%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           +D  ++L LFRWA+ +  Y    E Y M+ D+L + +  D M +L +EM     +  +  
Sbjct: 90  DDWKSALGLFRWAESRLGYEHAPEAYDMMVDILGKLKQVDKMRALMEEM----RQGNLVR 145

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
            S   + ++ LA A + E +   F  + + + + +T+S N+L+     +    +A  I+ 
Sbjct: 146 LSTVAKAMRRLAGAGEWEDAVRVFDDLGNFELEKNTESMNLLLDTLCKERKVEQARAIFL 205

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            + K   S +  T+ + I    K+ R+D A    QEMK    RP    +++++ S  +  
Sbjct: 206 EL-KPHISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQS 264

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
                 ++  +MQ  G  P+   Y +++ S  K  + + AL++ + MR  G +P+   + 
Sbjct: 265 NFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERMRSVGCKPDTLFYN 324

Query: 415 MIIESHAKSGKLDIAMSIF-TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-T 472
            +I +  ++G+L  A+ +F  +M + G  P  STY+ ++ M     Q   A+ L   +  
Sbjct: 325 ALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALNLLREIEN 384

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY-SVDVSASDVLM 522
           S   +P + TY  +L    K   +D  +  L +M    + S+DVSA  +L+
Sbjct: 385 STFCKPDIQTYYPVLKSCFKTGKIDSLSNFLDDMVNKHHLSLDVSAYTLLI 435



 Score = 43.1 bits (100), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSD-CKIDTQSY-NVLMTLFLNKGLPYKAFEIY 293
           S YN +I       + + +    +++ +S  CK D Q+Y  VL + F    +   +  + 
Sbjct: 357 STYNSMIAMFCHHSQEQKALNLLREIENSTFCKPDIQTYYPVLKSCFKTGKIDSLSNFLD 416

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           + + K   SLD S Y L+I  L ++ + +    LF+EM  +   P +   A L+D + + 
Sbjct: 417 DMVNKHHLSLDVSAYTLLIHGLCRANKCEWGYNLFEEMVGKAITPRYKTCALLLDEIKQK 476

Query: 354 GRLDTSMKVYMEMQ 367
              D + ++ + M+
Sbjct: 477 NMHDAAERIEVFMK 490


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 148/343 (43%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + R F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTREHKLWVPFDTCRKVL-EHLMKLRYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K   +D   +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +L     K G L+ A  L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V    K L EM+  G+   V   +VLM
Sbjct: 387 XGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTYNVLM 429



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 152/369 (41%), Gaps = 3/369 (0%)

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC--KIDTQSYNVLMTLFLNKGLPYKAFE 291
           +FS    +IQ +        +   F  +L++    + D   ++ L+T +L  G    A E
Sbjct: 34  MFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIE 93

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
            Y    + +  +   T   ++  L K          ++E+ E  +  S   F  L+    
Sbjct: 94  CYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFC 153

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K G +  +  V+  +   G RP    Y +L+  Y + G LD   RL   M  +G +P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVY 213

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            ++++I    K   +D    +F +M   G +P   T++ L++ H  +G+VD AM++Y  M
Sbjct: 214 TYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSV 530
            S  L P   TY  L   L K+  ++ A  ++ EM   G   D  + + ++    K+G +
Sbjct: 274 LSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 333

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D A    + M    I  ++     L     +      A+ +L   +    K D   YT +
Sbjct: 334 DAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDXGTYTMI 393

Query: 591 LAHLVRCQD 599
           +    +  D
Sbjct: 394 INEFCKKGD 402


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 188/426 (44%), Gaps = 8/426 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  FR  K+ +  +P + C  +L  ++  S      L  + E++       +  F   N
Sbjct: 181 AIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVA-LEFYLEILDSGYPPNVYTF---N 236

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++  L K  K++ +   F ++  +  +    S+N L+  +   G   + F +   ME+ 
Sbjct: 237 VLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEF 296

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY  +I  L K  +L+ A  LF+EM +R   P+   F +L++   K GR+D +
Sbjct: 297 RVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLA 356

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           +++Y +M   G +    +Y +LI+   K G    A +   EM   G  P+   +T +++ 
Sbjct: 357 LEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDG 416

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L++A+ +  +M + G       ++ ++      G++  A +    M  AGL+P 
Sbjct: 417 SCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPD 476

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLR 538
             TYT ++    K+  V +  K+L EM++ G+   V   +VLM  + K G V +A   L 
Sbjct: 477 DGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLN 536

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
            M + G+  ++     L +   K+              E     D   Y S+L  L +  
Sbjct: 537 AMLNLGVVPDDITYNILLQGHCKHG---KLGDFQNVKTEMGLVSDYASYRSLLHELSKAS 593

Query: 599 DEQNER 604
            ++ +R
Sbjct: 594 KDRQKR 599



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 169/364 (46%), Gaps = 9/364 (2%)

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS-TYELMI 312
           SYC     L +  +++ Q+ ++L  +   KG    A  ++ S+ + + +L  S  ++ ++
Sbjct: 112 SYCSMVHFLIAH-RMNQQAESLLHFVVSRKG-KGSASSVFASILETKGTLSSSFVFDALM 169

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
               + G +  AI+ F+  K+ N +  FN    L++ M K      +++ Y+E+   G+ 
Sbjct: 170 SVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEILDSGYP 229

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   +  L+    K GK+  A  ++DE+R  G +P    F  +I  + KSG L+    +
Sbjct: 230 PNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRL 289

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              ME     P   TYS L++      Q++ A  L+  M   GL P   T+T L+    K
Sbjct: 290 KMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCK 349

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFI 551
              VD+A +I  +M T G   D+   + L+  + K G    A +++  M   G+  + F 
Sbjct: 350 NGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFT 409

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ---NERHLMA 608
              L +   K    E A  + +  V+   ++D V +T++++ L  C+D +    ER L  
Sbjct: 410 YTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGL--CRDGKIVDAERTLRE 467

Query: 609 ILSA 612
           +L A
Sbjct: 468 MLRA 471


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 178/407 (43%), Gaps = 23/407 (5%)

Query: 130 LNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS---DTSLSLFRW 186
           +N S  A+ +    ++    E+  ++    FVP     ++ +  + D+   + +  LF  
Sbjct: 419 VNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEE 478

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
            K+    VP    Y +L D   ++       + FDEM+ D+    +     Y  +I    
Sbjct: 479 MKKNG-IVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVV---TYTSLIHAYL 534

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME--------- 297
           KA K+  +   F+ +L    K +  +Y  L+      G   KA +IY  M+         
Sbjct: 535 KARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDID 594

Query: 298 ------KGECSLDGS-TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
                   +C      TY  ++  L K+ R++ A +L   M      P+  ++ +L+D  
Sbjct: 595 MYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGF 654

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K G+L+ + +V+++M   G+ P+   Y SLI S  K  +LD  L++  +M      PN 
Sbjct: 655 CKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNV 714

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
            ++T +I+   K GK + A  +   ME  G  P   TY+ +++     G+++  ++LY  
Sbjct: 715 VIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRD 774

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           M S G  P   TY  L+       L+D A ++L EMK   +   +S+
Sbjct: 775 MCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISS 821



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 103/496 (20%), Positives = 193/496 (38%), Gaps = 46/496 (9%)

Query: 139 VEVVNRWKWGPELETQLDKLQFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPG 196
           + + N  + G   ETQ    QF  ++    + + + ++   +  +  F WA RQ  Y   
Sbjct: 73  LSISNAIRTGFGAETQNFLRQFRGRLSEPLVVEVMNLVKHPEFCVEFFLWASRQIGYSHT 132

Query: 197 DECYVMLFDVL-----NESR------------DFDGMLSLFDEMVHDSSKNGI------- 232
              Y  L ++L     N  R            D + +  L + ++    +NG+       
Sbjct: 133 PVVYNALIELLCCNAVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQKCCRNGMWNVALEE 192

Query: 233 ----------SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
                     +  + YN +IQ   +ADKL+ ++   +++ +S  ++D  +          
Sbjct: 193 LGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCK 252

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
            G    A  +   +EK E   D   Y  M+  L ++     A+ +   M+  +  P+   
Sbjct: 253 AGRCGDALSL---LEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVT 309

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           +  L+      G+L    ++   M   G  P+  M+ SL+ +Y K+     A +L+ +M 
Sbjct: 310 YRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMI 369

Query: 403 IAGFRPNFGLFTMII------ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
             G +P + L+ + I      E    S  L++A   +++M   G +      S       
Sbjct: 370 KCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLC 429

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            +G+ D A ++   M S G  P  STY+ ++  L     V+ A  +  EMK  G    V 
Sbjct: 430 GAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVY 489

Query: 517 ASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
              +L+  + K G +  A  W   M       N      L  + +K      A  L E  
Sbjct: 490 TYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMM 549

Query: 576 VESAAKVDLVLYTSVL 591
           +   +K ++V YT+++
Sbjct: 550 LLEGSKPNVVTYTALI 565



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 148/330 (44%), Gaps = 42/330 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L D L ++   +    L D M V+    N I     Y+ +I    K  KLE +   F
Sbjct: 612 YGALVDGLCKANRVEEAHELLDTMSVNGCEPNQI----VYDALIDGFCKTGKLENAQEVF 667

Query: 259 KKVLDSDCKIDTQSYNVLM-TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
            K+ +     +  +Y+ L+ +LF  K L     ++   M +  C+ +   Y  MI  L K
Sbjct: 668 VKMSERGYCPNLYTYSSLINSLFKEKRLDL-VLKVLSKMLENSCTPNVVIYTDMIDGLCK 726

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G+ + A +L  +M+E    P+   + +++D  GK G+++  +++Y +M   G  P+   
Sbjct: 727 VGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFIT 786

Query: 378 YVSLIESYAKAGKLDTALRLWDEMR--------------IAGFRPNF------------- 410
           Y  LI      G LD A RL DEM+              I GF   F             
Sbjct: 787 YRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSEN 846

Query: 411 ------GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY--SCLLEMHASSGQVD 462
                  L+ ++I++  K+G+L+ A+++  ++  +  L   + Y  + L+E  + + +VD
Sbjct: 847 ESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVD 906

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
            A +LY SM +  + P LST+  L+  L +
Sbjct: 907 KAFELYASMINKNVVPELSTFVHLIKGLTR 936



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 132/284 (46%), Gaps = 13/284 (4%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y P    Y  L + L + +  D +L +  +M+ +S    + +   Y  +I  L K  K E
Sbjct: 675 YCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVI---YTDMIDGLCKVGKTE 731

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +Y    K+ +  C  +  +Y  ++  F   G   +  E+Y  M    C+ +  TY ++I
Sbjct: 732 EAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLI 791

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
                +G LD A +L  EMK+  +    + +  +++   +     TS+ +  E+      
Sbjct: 792 NHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNR--EFITSIGLLDELSENESV 849

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG-----LFTMIIESHAKSGKLD 427
           P   +Y  LI+++ KAG+L+ AL L +E+  +   P+       L+T +IES + + K+D
Sbjct: 850 PVESLYRILIDNFIKAGRLEGALNLLEEISSS---PSLAVANKYLYTSLIESLSHASKVD 906

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            A  ++  M     +P  ST+  L++     G+   A++L +S+
Sbjct: 907 KAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSI 950


>gi|356575210|ref|XP_003555735.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Glycine max]
          Length = 609

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 182/379 (48%), Gaps = 12/379 (3%)

Query: 165 VHITQALKVINDSDTSLSLFRWAK----RQSWYVPGDECYVMLFDVL-NESRDFDGMLSL 219
           +HI +A   +N+ +  + LFR  +    R S Y+   + YV+L + L    R F+  L  
Sbjct: 232 LHIMEAYSKLNECEKVVQLFREFESRKLRGSSYLA--QIYVILCESLARHGRAFEA-LDF 288

Query: 220 FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           F EM    +K GIS +S Y+++I   A   ++ ++    ++        D + Y  L+ +
Sbjct: 289 FTEM----AKKGISEYSIYSKLIYSFASLREVVVAEELLREAKGKMTIKDPEVYLKLVHM 344

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           ++ +GL  K  E+ + ME  +  +       ++   +K     AA+K+F+E+  + +   
Sbjct: 345 YIEEGLLEKTLEVVKEMEDADVKVSDCILCTVVNGFSKKRGFLAAVKVFEELISKGYESG 404

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              +AS++++  + G+   + +V++EM+  G       Y ++I  Y + G++ +A++L  
Sbjct: 405 QVTYASVINAYWRLGQYSKAEEVFLEMEQKGFDKCVYAYSTMIVMYGRTGRVRSAMKLVA 464

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           +M+  G +PN  ++  +I+ H +   L     ++ +M+R    P   +Y+ ++  ++ +G
Sbjct: 465 KMKERGCKPNVWIYNSLIDMHGRDKNLKQLEKLWKEMKRRRVAPDKVSYTSIIGAYSKAG 524

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519
           + ++ +K +N     G     +    ++ + +K  LVD   K+L +MK  G  +D     
Sbjct: 525 EFETCVKFFNEYRMNGGLIDRAMAGIMVGVFSKVGLVDELVKLLQDMKAEGTRLDQRLYQ 584

Query: 520 VLMVYIKDGSVDHALRWLR 538
                 KD  +    RW++
Sbjct: 585 SAWNAFKDAGLQIQARWMK 603



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 143/326 (43%), Gaps = 12/326 (3%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           +SYN L  +F N  L      ++E M+     LD   Y  ++ + +K    +  ++LF+E
Sbjct: 201 RSYNKLH-MFRNTVL------VFERMKSSNVVLDSRGYLHIMEAYSKLNECEKVVQLFRE 253

Query: 331 MKERNFRPS---FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
            + R  R S     I+  L +S+ + GR   ++  + EM   G    + +Y  LI S+A 
Sbjct: 254 FESRKLRGSSYLAQIYVILCESLARHGRAFEALDFFTEMAKKGISEYS-IYSKLIYSFAS 312

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
             ++  A  L  E +      +  ++  ++  + + G L+  + +  +ME A    +   
Sbjct: 313 LREVVVAEELLREAKGKMTIKDPEVYLKLVHMYIEEGLLEKTLEVVKEMEDADVKVSDCI 372

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
              ++   +      +A+K++  + S G   G  TY +++    +      A ++ LEM+
Sbjct: 373 LCTVVNGFSKKRGFLAAVKVFEELISKGYESGQVTYASVINAYWRLGQYSKAEEVFLEME 432

Query: 508 TMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G+   V A S ++++Y + G V  A++ +  M   G + N +I   L +   ++   +
Sbjct: 433 QKGFDKCVYAYSTMIVMYGRTGRVRSAMKLVAKMKERGCKPNVWIYNSLIDMHGRDKNLK 492

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLA 592
             + L +         D V YTS++ 
Sbjct: 493 QLEKLWKEMKRRRVAPDKVSYTSIIG 518


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 154/319 (48%), Gaps = 7/319 (2%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI--QYLAKADKL 251
           +P    Y +LFD L  + +   MLSLF E    S K G+ +  AY   I    L K  K+
Sbjct: 296 LPDGFTYSILFDGLTRTGESQTMLSLFAE----SLKKGV-MLGAYTCSILLNGLCKDGKV 350

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
             +   F+ ++ +     T  YN L+  +        AF I+E M+      D  TY  +
Sbjct: 351 AKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNAL 410

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L K   +  A  L  EM++    PS   F +L+D+ G AG+L+    V  +MQ  G 
Sbjct: 411 INGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           +     + S+++++ K GK+  A+ + D+M      PN  ++  II+++ +SG  + A+ 
Sbjct: 471 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALL 530

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +   M+ +G   +  TY+ LL+    S Q+D A +L  ++ + GLRP + +Y  +++   
Sbjct: 531 LVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACC 590

Query: 492 KRKLVDVAAKILLEMKTMG 510
            +   D A ++L EM   G
Sbjct: 591 NKGDTDKALELLQEMNKYG 609



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 174/403 (43%), Gaps = 6/403 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L   L  +   D   +L DEM  H    +G +    Y+ +   L +  + +     F
Sbjct: 267 YNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFT----YSILFDGLTRTGESQTMLSLF 322

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            + L     +   + ++L+      G   KA +++E +           Y  +I    + 
Sbjct: 323 AESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQV 382

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
             L  A  +F++MK R+ RP    + +L++ + K   +  +  + MEM+  G  PS   +
Sbjct: 383 RDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETF 442

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +LI++Y  AG+L+    +  +M+  G + +   F  ++++  K+GK+  A++I  DM  
Sbjct: 443 NTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIY 502

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
               P    Y+ +++ +  SG  + A+ L   M ++G+   + TY  LL  L +   +D 
Sbjct: 503 KDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDE 562

Query: 499 AAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A +++  ++  G   D VS + ++      G  D AL  L+ M   GIR        L  
Sbjct: 563 AEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVS 622

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDE 600
           +          + L +  +    +    +Y  ++   VRC+++
Sbjct: 623 ALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCEND 665



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 157/369 (42%), Gaps = 3/369 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI--DTQSYNVLMTLFLNKGLPYKAFEIYE 294
           A+N+V+Q    A  L+++    +++  S+     D  SYNV++      G    A ++++
Sbjct: 159 AWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFD 218

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M     + +  TY  MI    K G L+A  +L  +M     +P+   +  L+  + + G
Sbjct: 219 EMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTG 278

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R+D +  +  EM      P    Y  L +   + G+  T L L+ E    G        +
Sbjct: 279 RMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCS 338

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           +++    K GK+  A  +F  +   G +PT   Y+ L+  +     +  A  ++  M S 
Sbjct: 339 ILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSR 398

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +RP   TY AL+  L K ++V  A  +++EM+  G    V   + L+  Y   G ++  
Sbjct: 399 HIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKC 458

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
              L  M   GI+++      + ++  KN     A  +L+  +      +  +Y S++  
Sbjct: 459 FTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDA 518

Query: 594 LVRCQDEQN 602
            +   D + 
Sbjct: 519 YIESGDTEQ 527



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 149/322 (46%), Gaps = 4/322 (1%)

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
            L    +S T LSLF  + ++   +    C ++L  +  + +       +F+ +VH    
Sbjct: 308 GLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGK-VAKAKQVFEMLVHTGL- 365

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
             +     YN +I    +   L  ++C F+++     + D  +YN L+       +  KA
Sbjct: 366 --VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 423

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            ++   MEK        T+  +I +   +G+L+    +  +M+++  +     F S+V +
Sbjct: 424 EDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKA 483

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
             K G++  ++ +  +M      P+A +Y S+I++Y ++G  + AL L ++M+ +G   +
Sbjct: 484 FCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSAS 543

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              + ++++   +S ++D A  +   +   G  P   +Y+ ++    + G  D A++L  
Sbjct: 544 IVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQ 603

Query: 470 SMTSAGLRPGLSTYTALLTLLA 491
            M   G+RP L T   L++ LA
Sbjct: 604 EMNKYGIRPTLRTCHTLVSALA 625



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 142/325 (43%), Gaps = 3/325 (0%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
            +  VP    Y  L +   + RD  G   +F++M    S++       YN +I  L K +
Sbjct: 362 HTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM---KSRHIRPDHITYNALINGLCKLE 418

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            +  +     ++  S      +++N L+  +   G   K F +   M++     D  ++ 
Sbjct: 419 MVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFG 478

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++ +  K+G++  A+ +  +M  ++  P+  ++ S++D+  ++G  + ++ +  +M+  
Sbjct: 479 SVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNS 538

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G   S   Y  L++   ++ ++D A  L   +R  G RP+   +  II +    G  D A
Sbjct: 539 GVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKA 598

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           + +  +M + G  PT  T   L+   AS+G+V     LY  M    + P  S Y  ++  
Sbjct: 599 LELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDA 658

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVD 514
             + +     A +  EM   G + D
Sbjct: 659 YVRCENDSKVASLKKEMSEKGIAFD 683



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 108/265 (40%), Gaps = 3/265 (1%)

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           PS +    L++S+   GR       +  +   G RP    +  ++++   AG LD AL +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 398 WDEM-RIAGFRPNFGL-FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
              M R  G  P     + ++I    +SGK   A+ +F +M   G  P   TY+ +++ H
Sbjct: 180 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGH 239

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
              G +++  +L + M   G +P + TY  LL+ L +   +D    ++ EM +     D 
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDG 299

Query: 516 SASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
               +L   + + G     L         G+    +    L     K+     AK + E 
Sbjct: 300 FTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEM 359

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQD 599
            V +      V+Y +++    + +D
Sbjct: 360 LVHTGLVPTTVIYNTLINGYCQVRD 384



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 102/235 (43%), Gaps = 7/235 (2%)

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           C   PS      L+ES    G+       +  +  AG RP+   +  ++++   +G LD+
Sbjct: 116 CSPLPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDV 175

Query: 429 AMSIFTDMERAGFLPTPS--TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           A+++   M R+   P P   +Y+ ++     SG+   A+K+++ M   G+ P   TY  +
Sbjct: 176 ALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTM 235

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGI 545
           +    K   ++   ++  +M   G   +V   +VL+  + + G +D     +  M S  +
Sbjct: 236 IDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSM 295

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK-VDLVLYTSVLAHLVRCQD 599
             + F    LF+   +      ++ +L  + ES  K V L  YT  +     C+D
Sbjct: 296 LPDGFTYSILFDGLTRTG---ESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKD 347


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 200/471 (42%), Gaps = 19/471 (4%)

Query: 132 ASAVAKIVEVVNRWKWGPELETQLDKLQFVPK----------MVHITQALKVINDSDTSL 181
           ASA   ++ V++R  W P L  +  +L               MVH        + +DT +
Sbjct: 122 ASASNALLAVLSRAGW-PHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVI 180

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           S     KR  +  P    + +L D    + D D  ++L D M +   K GI     YN V
Sbjct: 181 S--EMEKRCVF--PDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIV---TYNSV 233

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           ++ L K  + + +   F+ +       D +S+N+L+  F   G   +A + Y+ M+    
Sbjct: 234 LKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYV 293

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           + D  ++  +I   ++ G +D A    +EMK     P   I+  ++    +AG +  +++
Sbjct: 294 TPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALR 353

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           V  EM G G  P    Y +L+    K  +L  A +L +EM   G  P+   FT +I  + 
Sbjct: 354 VRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYC 413

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           + G  + A+ +F  + R    P   TY+ L++     G +  A +L++ M +  + P   
Sbjct: 414 RQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHI 473

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFM 540
           TY+ L+    ++  V+ A   L EM   G   ++ + + ++  Y + G+V    ++L+ M
Sbjct: 474 TYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKM 533

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               +  +      L    +K      A  +     +   + D V Y  ++
Sbjct: 534 RQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMII 584



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 129/283 (45%), Gaps = 1/283 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   Y +++  F   G   +A  + + M    C  D  TY  ++  L K  RL  A KL 
Sbjct: 331 DGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLL 390

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM+ER   P    F +L+    + G  + +++++  +     RP    Y SLI+   + 
Sbjct: 391 NEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRK 450

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L  A  LWD+M      PN   ++++I+SH + G+++ A     +M + G LP   TY
Sbjct: 451 GDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTY 510

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-K 507
           + +++ +  SG V    +    M    + P L T+  L+    K + +  A  +   M K
Sbjct: 511 NSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEK 570

Query: 508 TMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
            M     V+ + ++  + + G++  A R  + MG SGI  + +
Sbjct: 571 EMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRY 613



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 157/363 (43%), Gaps = 1/363 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           ++ +I+   ++ K   ++  F+ +LD    +   + N L+ +    G P+ A E Y  + 
Sbjct: 90  FDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRLVL 149

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
             +  ++  T  +M+ S  K+   D A  +  EM++R   P       L+D+  +AG +D
Sbjct: 150 SSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVD 209

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +   M   G +P    Y S+++   K  + D A  ++  M      P+   F ++I
Sbjct: 210 AAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILI 269

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               + G++  A+  + +M+     P   ++SCL+ + +  G++D A      M   GL 
Sbjct: 270 GGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLV 329

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P    YT ++    +   +  A ++  EM   G   DV   + L+  + K   +  A + 
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKL 389

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M   G+  +      L     +   +E+A  L +T +    + D+V Y S++  + R
Sbjct: 390 LNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCR 449

Query: 597 CQD 599
             D
Sbjct: 450 KGD 452



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 129/295 (43%), Gaps = 3/295 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y M+      +      L + DEMV       +     YN ++  L K  +L  
Sbjct: 329 VPDGVIYTMVIGGFCRAGSMSEALRVRDEMV---GFGCLPDVVTYNTLLNGLCKQHRLLD 385

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +     ++ +     D  ++  L+  +  +G    A ++++++ +     D  TY  +I 
Sbjct: 386 AEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLID 445

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            + + G L  A +L+ +M  R   P+   ++ L+DS  + G+++ +     EM   G+ P
Sbjct: 446 GMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLP 505

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y S+I+ Y ++G +    +   +MR     P+   F  +I  + K   +  A ++F
Sbjct: 506 NIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVF 565

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
             ME+    P   TY+ ++   +  G +  A +++  M  +G+ P   TY +L+ 
Sbjct: 566 NIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLIN 620



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 114/259 (44%), Gaps = 1/259 (0%)

Query: 221 DEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           ++++++  + G++     +  +I    +    E +   F  +L    + D  +YN L+  
Sbjct: 387 EKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDG 446

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
              KG   KA E+++ M   E   +  TY ++I S  + G+++ A     EM ++   P+
Sbjct: 447 MCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPN 506

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              + S++    ++G +    +   +M+     P    + +LI  Y K   +  A  +++
Sbjct: 507 IRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFN 566

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            M     RP+   + MII   ++ G +  A  +F  M  +G  P   TY  L+  H ++G
Sbjct: 567 IMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAG 626

Query: 460 QVDSAMKLYNSMTSAGLRP 478
               A +L++ M   G  P
Sbjct: 627 NSKQAFQLHDEMIHRGFAP 645



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/356 (20%), Positives = 135/356 (37%), Gaps = 36/356 (10%)

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           EI  S+     +     ++L+I +  +S +   A + F+ + +       +   +L+  +
Sbjct: 73  EIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVL 132

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----------------------- 387
            +AG    + + Y  +       +A     ++ SY K                       
Sbjct: 133 SRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDV 192

Query: 388 ------------AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
                       AG +D A+ L D M   G +P    +  +++   K  + D A  +F  
Sbjct: 193 VTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRT 252

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M++    P   +++ L+      G+V  A+K Y  M    + P + +++ L+ L ++R  
Sbjct: 253 MDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGE 312

Query: 496 VDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           +D A   L EMK +G   D V  + V+  + + GS+  ALR    M   G   +      
Sbjct: 313 MDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNT 372

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
           L     K      A+ LL    E     DL  +T+++    R  + +N   L   L
Sbjct: 373 LLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTL 428



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 4/232 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           + +L LF    RQ    P    Y  L D +    D      L+D+M    ++  +     
Sbjct: 419 ENALQLFDTLLRQRLR-PDVVTYNSLIDGMCRKGDLAKANELWDDM---HAREILPNHIT 474

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I    +  ++E ++    +++      + ++YN ++  +   G   K  +  + M 
Sbjct: 475 YSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMR 534

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D  T+  +I    K   +  A  +F  M++   RP    +  +++   + G + 
Sbjct: 535 QDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQ 594

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
            + +V+  M   G  P    Y+SLI  +  AG    A +L DEM   GF P+
Sbjct: 595 DAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 193/430 (44%), Gaps = 15/430 (3%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           C  ++  +    R  D  L LFD+M      +  + F ++  ++     A+ L+ S    
Sbjct: 150 CQQIIVVLCRSGRQADA-LQLFDQMTTHYGYSPDARFLSF--LVSSCTCANLLDASATLL 206

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES-MEKGECSLDGSTYELMIPSLAK 317
            K  +  C+++  +YN LM+  + +G  +    ++E  ++    S D  ++ ++I  + +
Sbjct: 207 SKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCR 266

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG-HRPSAP 376
            G++  A++L + M E    P       +VD + +   +    +V   +Q  G   P+  
Sbjct: 267 VGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVV 326

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            + S+I  Y KAGKL+ A+ ++++M  +G  PN   + ++I  + K G L  A+ ++  M
Sbjct: 327 TFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM 386

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            R    P   T+S L++ +   GQ+D A+++++ M    ++P + T++ ++  L K+   
Sbjct: 387 TRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRS 446

Query: 497 DVAAKILLEMKTMGYSVDVSA-----SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
           D A  +L E+       D++      + V+ V  K G VD A    + M   G R + + 
Sbjct: 447 DEAICLLNELN---LRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYT 503

Query: 552 VRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
              L    CMK+ + E A       VE+    D +     ++ L++        H+M + 
Sbjct: 504 YTILIIGYCMKSRISE-AIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMRLA 562

Query: 611 SATKHKAHAF 620
           S        F
Sbjct: 563 SGGASSIQEF 572


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 193/447 (43%), Gaps = 17/447 (3%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++ YL K  K   +   F  ++    K D   Y +++  +  KG   +     + M
Sbjct: 311 TYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLM 370

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S +   + ++  + AK   +  A+ +F +M+++   P+   +A+L+D++ K GR+
Sbjct: 371 VGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRV 430

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +   + +M   G  P+  ++ SL+       K + A  L+ EM   G  PN   F  I
Sbjct: 431 DDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTI 490

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           + +    G++  A  +   MER G  P   +Y+ L+  H   G+ D A KL + M S GL
Sbjct: 491 MCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGL 550

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALR 535
           +P   TY  LL    +   +D A  +  EM + G + V V+ + +L    K      A  
Sbjct: 551 KPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKE 610

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M +SG + + +    +     KN   + A  + ++      +VD++ +  ++  L+
Sbjct: 611 LYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALL 670

Query: 596 RCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREF----FHGIDYELE 651
           +   +++  +L A +SA          GL       +    + + E     F G+  E+E
Sbjct: 671 KDGRKEDAMNLFATISAN---------GLVPDVTTYRLIAENLIEEGSLEEFDGMFSEME 721

Query: 652 EGAA---RYFVNVLLNYLVLMGQINRA 675
           +         +N L+  L+L G I+RA
Sbjct: 722 KSGCAPNSLMLNFLVRRLLLRGDISRA 748



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 169/400 (42%), Gaps = 14/400 (3%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFS---AYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           S   D  L LFDE +H +    I  F+   A          +   E+   CF +++   C
Sbjct: 28  SLSVDDALKLFDEFLHHARPASIIAFNQLLAAVSSASRRGSSSTSELVVSCFNRMIRDCC 87

Query: 267 KI---DTQSYNVLMTLFLNKGLPYKAFEIYESMEK-GECSLDGSTYELMIPSLAKSGRLD 322
                D  +Y++L+  F   G     F  +  + K G    D      ++  L  + R+ 
Sbjct: 88  SKVAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVG 147

Query: 323 AAIK-LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP----M 377
            A+  L + M E    P+   + +L+       R + ++++ + M   G   S P     
Sbjct: 148 EAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALEL-LHMMADGQVRSCPPNLVS 206

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y ++I  +   G++D A  L+ +M   G  PN   +T++I+   K+  +D A  +F  M 
Sbjct: 207 YNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMI 266

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   TY+CL+  + S GQ    +++   M++ GL P   TY  LL  L K+    
Sbjct: 267 DKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCT 326

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A K+   M   G   DVS   +++  Y   G++     +L  M  +GI  N++I   +F
Sbjct: 327 EARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVF 386

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            +  K A+   A  +     +     ++V Y +++  L +
Sbjct: 387 CAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCK 426



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 151/368 (41%), Gaps = 38/368 (10%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C  +  SYN ++  F  +G   KA+ ++  M       +  TY ++I  L K+  +D A 
Sbjct: 200 CPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAE 259

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            +FQ+M ++  RP+   +  L+      G+    +++  EM   G  P    Y  L++  
Sbjct: 260 GVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYL 319

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK-------LDI---------- 428
            K GK   A +L+D M   G +P+  ++ +I+  +A  G        LD+          
Sbjct: 320 CKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNH 379

Query: 429 ------------------AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
                             AM IF  M + G  P    Y+ L++     G+VD A   +N 
Sbjct: 380 YIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQ 439

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGS 529
           M + G+ P +  +T+L+  L      + A ++  EM   G   +V   + +M  +  +G 
Sbjct: 440 MINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGR 499

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYT 588
           V  A R +  M   G R +      L    C+     E++K LL+  +    K +   Y 
Sbjct: 500 VMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASK-LLDIMLSVGLKPNECTYN 558

Query: 589 SVLAHLVR 596
           ++L    R
Sbjct: 559 TLLHGYCR 566



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 173/388 (44%), Gaps = 5/388 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  VI  L KA  ++ +   F++++D   + +  +Y  L+  +L+ G   +   + + M
Sbjct: 241 TYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEM 300

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY L++  L K G+   A KLF  M  +  +P  +I+  ++      G L
Sbjct: 301 SAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGAL 360

Query: 357 DTSMKVYME-MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            + M  +++ M G G  P+  ++  +  ++AK   +  A+ ++++MR  G  PN   +  
Sbjct: 361 -SEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYAT 419

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I++  K G++D A   F  M   G  P    ++ L+    +  + + A +L+  M + G
Sbjct: 420 LIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQG 479

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHAL 534
           + P +  +  ++  L     V  A +++  M+ +G   D+ + + L+  +   G  D A 
Sbjct: 480 IHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEAS 539

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           + L  M S G++ N      L     ++   + A  + +  + +     +V Y ++L  L
Sbjct: 540 KLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGL 599

Query: 595 VRCQ--DEQNERHLMAILSATKHKAHAF 620
            + +   E  E +L  I S  +   + +
Sbjct: 600 FKTRRFSEAKELYLNMITSGKQWSIYTY 627



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/369 (19%), Positives = 149/369 (40%), Gaps = 38/369 (10%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    Y  L D L +    D     F++M+++     I +F++   ++  L   
Sbjct: 406 RQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTS---LVYGLCTI 462

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK---------- 298
           DK E +   F ++++     +   +N +M     +G   KA  + + ME+          
Sbjct: 463 DKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISY 522

Query: 299 -----GECSL--------------------DGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
                G C +                    +  TY  ++    + GR+D A  +FQEM  
Sbjct: 523 NALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLS 582

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    + +++  + K  R   + ++Y+ M   G + S   Y  ++   +K   +D 
Sbjct: 583 NGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDE 642

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           AL+++  +     + +   F ++I +  K G+ + AM++F  +   G +P  +TY  + E
Sbjct: 643 ALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAE 702

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G ++    +++ M  +G  P       L+  L  R  +  A   L ++    +S+
Sbjct: 703 NLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEKNFSL 762

Query: 514 DVSASDVLM 522
           + S + +L+
Sbjct: 763 EASTTSMLI 771



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 98/218 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++    +  +++ +Y  F+++L +       +YN ++          +A E+Y +M
Sbjct: 556 TYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNM 615

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                     TY +++  L+K+  +D A+K+FQ +  ++ +     F  ++ ++ K GR 
Sbjct: 616 ITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRK 675

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +M ++  +   G  P    Y  + E+  + G L+    ++ EM  +G  PN  +   +
Sbjct: 676 EDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFL 735

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           +      G +  A +  + ++   F    ST S L+ +
Sbjct: 736 VRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISL 773



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 54/336 (16%)

Query: 309 ELMIPSLAKSGRL--DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           E +I + A++G L  D A+KLF E        S   F  L+ ++  A R  +S    + +
Sbjct: 17  ERIIGARARAGSLSVDDALKLFDEFLHHARPASIIAFNQLLAAVSSASRRGSSSTSELVV 76

Query: 367 QGCGHR----------PSAPMYVSLIESYAKAGKLDTALR-------------------- 396
             C +R          P    Y  L+  + + G+L+                        
Sbjct: 77  S-CFNRMIRDCCSKVAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNR 135

Query: 397 ----LWDEMRIA-------------GFRPNFGLFTMIIESHAKSGKLDIAMSIF---TDM 436
               L D  R+              G  PN   +  +++      + + A+ +     D 
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADG 195

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +     P   +Y+ ++    + GQVD A  L+  MT  G+ P + TYT ++  L K ++V
Sbjct: 196 QVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVV 255

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           D A  +  +M   G   ++     L+  Y+  G     +R L+ M + G+  + F    L
Sbjct: 256 DRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLL 315

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +   K      A+ L ++ +    K D+ +Y  +L
Sbjct: 316 LDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIIL 351


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 155/317 (48%), Gaps = 7/317 (2%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF-LNKGLPYKAFEIY 293
            +++N ++  L K+ ++E +Y  F+  L     +DT +YNV++  + L K  P KA E+ 
Sbjct: 161 LASFNTILDVLCKSKRVEKAYELFR-ALRGRFSVDTVTYNVILNGWCLIKRTP-KALEVL 218

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           + M +   + + +TY  M+    ++G++  A + F EMK+R+       + ++V   G A
Sbjct: 219 KEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVA 278

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G +  +  V+ EM   G  PS   Y ++I+   K   ++ A+ +++EM   G+ PN   +
Sbjct: 279 GEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTY 338

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
            ++I     +G+      +   ME  G  P   TY+ ++  ++   +V+ A+ L+  M S
Sbjct: 339 NVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGS 398

Query: 474 AGLRPGLSTYTALLTLLAKRKLVD---VAAKILLEMKTMGY-SVDVSASDVLMVYIKDGS 529
               P L TY  L++ +  RK  +   VA K+LLEM   G+     + + VL   +  G+
Sbjct: 399 GDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGN 458

Query: 530 VDHALRWLRFMGSSGIR 546
              A   LR    SG R
Sbjct: 459 QAFAKEILRLQSKSGSR 475



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 2/236 (0%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           PS   +  + E YA AGK D A++L+  M   G   +   F  I++   KS +++ A  +
Sbjct: 124 PSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYEL 183

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  + R  F     TY+ +L       +   A+++   M   G+ P L+TY  +L    +
Sbjct: 184 FRAL-RGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFR 242

Query: 493 RKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFI 551
              +  A +  LEMK     +D V+ + V+  +   G +  A      M   G+  +   
Sbjct: 243 AGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVAT 302

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
              + +   K    E+A  + E  V    + ++  Y  ++  L    +      LM
Sbjct: 303 YNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELM 358


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 193/432 (44%), Gaps = 12/432 (2%)

Query: 185 RWAKRQSWYVPGDECYVMLFDVLNESRDFD----GMLSLFDEMVHDSSKNGISLFSAYNR 240
           R + R S  V G +    L + L+++R  D      ++LF EMV       I  F   NR
Sbjct: 38  RCSARASSSVSGGD----LRERLSKTRLRDIKLHDAINLFREMVKTRPFPSIVDF---NR 90

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           ++  + K  K ++     KK+     + D  ++N+++  F        A  +   M K  
Sbjct: 91  LLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLG 150

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              D  T   ++    +  R+  A+ L  +M E  +RP    + +++DS+ K  R++ ++
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDAL 210

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             + E+   G RP+   Y +L+     +G+ + A RL  +M      PN   ++ ++++ 
Sbjct: 211 DFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAF 270

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K+GK+  A  IF +M R    P   TYS L+       ++D A ++++ M S G  P +
Sbjct: 271 VKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDV 330

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRF 539
            +Y  L+    K K V+   K+  +M   G   + V+ + ++  + + G VD A  +   
Sbjct: 331 VSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQ 390

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           M S G+  + +    L      N L E A  + E   +S   +D+V YT+V+  + +   
Sbjct: 391 MDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGK 450

Query: 600 EQNERHLMAILS 611
            ++   L   LS
Sbjct: 451 VEDAWGLFCSLS 462



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 163/352 (46%), Gaps = 8/352 (2%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y P    Y  + D L ++R  +  L  F E+     +  +  ++A   ++  L  + +  
Sbjct: 186 YRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTA---LVNGLCNSGRWN 242

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +    + ++      +  +Y+ L+  F+  G   +A EI+E M +     D  TY  +I
Sbjct: 243 DAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLI 302

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L    R+D A ++F  M  +   P    + +L++   KA R++  MK++ +M   G  
Sbjct: 303 NGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLV 362

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
            +   Y +LI+ + + G +D A   + +M   G  P+   + +++     +G L+ A+ I
Sbjct: 363 NNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVI 422

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F DM+++       TY+ +++    +G+V+ A  L+ S++  GL+P + TYT +++ L  
Sbjct: 423 FEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCT 482

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
           + L      +  +MK  G   + S     M+ + DG +  +   ++ M S G
Sbjct: 483 KGLQHEVEALYTKMKQEGLMKNDS-----MLCLGDGDITISAELIKKMLSCG 529


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 187/427 (43%), Gaps = 9/427 (2%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208
           P L+ + ++   V K   + + LK  +D   +L  F+       +      Y M+ + L 
Sbjct: 28  PNLKAENEEKSSVLKEADVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLA 87

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
             R+ D +  L  +M  +       LF +   VI    +A   E +   F ++ D   K 
Sbjct: 88  SEREMDCVQYLLQQMKLEGISCSEDLFIS---VIGSYRRAGSSEQALKTFYRMQDFRVKP 144

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
             + YN ++   L++        IY +M+K     +  TY +++ +L K+ R+D A KL 
Sbjct: 145 TVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLL 204

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM  +   P    + +L+ S+ K G++  + ++ M        PS P+Y +LI    K 
Sbjct: 205 VEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFT-----PSVPVYNALINGVCKE 259

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
              + A +L DEM   G  PN   +T II + + +G +++++++   M   G  P   T+
Sbjct: 260 YTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTF 319

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++     G    A+  ++ M   G+ P +  Y AL+  L  ++ +  A  +  +M+ 
Sbjct: 320 TSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEI 379

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   +V     L+  Y K G +D A     +M + G   N      + +   +N+++  
Sbjct: 380 NGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQ 439

Query: 568 AKPLLET 574
           A  L+E 
Sbjct: 440 AYCLIEN 446



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 153/347 (44%), Gaps = 6/347 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKL 251
           + P    Y  L + + +   F+    L DEM++     N IS    Y  +I  L+ A  +
Sbjct: 242 FTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVIS----YTTIINALSDAGNV 297

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E+S     K+    C  +  ++  L+  F  KG  ++A + ++ M +     +   Y  +
Sbjct: 298 ELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNAL 357

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           +  L     L  A+ +F +M+     P+   +++L+D   KAG LD + +V+  M   G 
Sbjct: 358 MHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGC 417

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+   Y  +++   +    + A  L + M++    PN   F   I+    SG++D A+ 
Sbjct: 418 HPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIK 477

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +F  M  +G  P  +TY+ LL+      +   A  L   M   G+   L TY  ++    
Sbjct: 478 VFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC 537

Query: 492 KRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL 537
              ++  A ++L +M   G   D ++ + V+  Y K G V+ A++ +
Sbjct: 538 CAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLM 584



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 136/294 (46%), Gaps = 3/294 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  L   L   R     +S+F++M  +     +  +SA   +I   AKA  L+ 
Sbjct: 348 VPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSA---LIDGYAKAGDLDG 404

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   +  ++   C  +  +Y  ++ +     +  +A+ + E+M+   C  +  T+   I 
Sbjct: 405 ASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIK 464

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L  SGR+D AIK+F +M      P+   +  L+DS+ K  R   +  +  +M+  G   
Sbjct: 465 GLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIEL 524

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y ++I  Y  AG L  AL L  +M + G +P+     ++I+++ K GK++IA+ + 
Sbjct: 525 NLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLM 584

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             +    + P    Y+ L+    +   V+ A+     M S G+ P ++T+  L+
Sbjct: 585 DRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLV 638



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 150/332 (45%), Gaps = 4/332 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L  +D M+ +     +    AYN ++  L     L  +   F ++  + C  + ++Y+ L
Sbjct: 336 LDFWDRMIREGV---VPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSAL 392

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  +   G    A E++  M    C  +   Y  M+  L ++   + A  L + M+  N 
Sbjct: 393 IDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENC 452

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   F + +  +  +GR+D ++KV+ +M   G  P+   Y  L++S  K  +   A  
Sbjct: 453 PPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFG 512

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +M   G   N   +  II  +  +G L  A+ +   M   G  P   T + +++ + 
Sbjct: 513 LVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYC 572

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G+V+ A++L + +++    P +  YT+L++ +     V+ A   L  M + G S +V+
Sbjct: 573 KQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVA 632

Query: 517 ASDVLMVYI-KDGSVDHALRWLRFMGSSGIRT 547
             +VL+ ++  +     A+++L  +  SG  T
Sbjct: 633 TWNVLVRHLFSNMGHSGAVQFLDAVLGSGFET 664



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 125/284 (44%), Gaps = 5/284 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           P    Y  L D   ++ D DG   +++ M+ H    N +    AY  ++  L +      
Sbjct: 384 PNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVV----AYTCMVDVLCRNSMFNQ 439

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +YC  + +   +C  +T ++N  +      G    A ++++ M    C  + +TY  ++ 
Sbjct: 440 AYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLD 499

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           SL K  R   A  L ++M+ R    +   + +++     AG L  ++++  +M   G +P
Sbjct: 500 SLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKP 559

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
            A     +I++Y K GK++ A++L D +    + P+   +T +I        ++ A+   
Sbjct: 560 DAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYL 619

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             M   G  P  +T++ L+    S+     A++  +++  +G  
Sbjct: 620 RRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSGFE 663


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M           Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 147/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +     RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L   L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 144/319 (45%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  KE  FR  F+    +++ + K     
Sbjct: 59  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E   CG+  S   +  L+ S+ K G++  A  ++D +     RP+   F  ++
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K G LD    +   M+ +G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L +   K    E+A    +  ++   ++D V YT++++ L  
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL-- 356

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 357 CQEGRSVDAEKMLREMLSV 375



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 169/381 (44%), Gaps = 4/381 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           ++L D+MV    +     F+    ++  L + +K   +    ++++   C+ D  +Y  +
Sbjct: 155 VALVDQMVEMGYQPDTVTFTT---LVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAV 211

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +     +G P  A  +   MEKG+   D   Y  +I SL K   +D A+ LF EM  +  
Sbjct: 212 INGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGI 271

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           RP    ++SL+  +   GR   + ++  +M      P+   + SLI+++AK GKL  A +
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+DEM      PN   +  +I       +LD A  IFT M     LP   TY+ L+    
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFC 391

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            + +V   M+L+  M+  GL     TYT L+    +    D A  +  +M + G   ++ 
Sbjct: 392 KAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIM 451

Query: 517 ASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
             + L+  + K+G ++ A+    ++  S +  + +    + E   K    E    L  + 
Sbjct: 452 TYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSL 511

Query: 576 VESAAKVDLVLYTSVLAHLVR 596
                K D++ Y ++++   +
Sbjct: 512 SLKGVKPDVIAYNTMISGFCK 532



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 152/356 (42%), Gaps = 13/356 (3%)

Query: 235 FSAYNRVIQYLAKADKL-EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
           F   NR+ + +A  D++ EM Y           + DT ++  L+          +A  + 
Sbjct: 145 FCHGNRISEAVALVDQMVEMGY-----------QPDTVTFTTLVHGLFQHNKASEAVALV 193

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           E M    C  D  TY  +I  L K G  D A+ L  +M++        I+++++DS+ K 
Sbjct: 194 ERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKY 253

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
             +D ++ ++ EM   G RP    Y SLI      G+   A RL  +M      PN   F
Sbjct: 254 RHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTF 313

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +I++ AK GKL  A  +F +M +    P   TY+ L+       ++D A +++  M S
Sbjct: 314 NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 373

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
               P + TY  L+    K K V    ++  +M   G   + V+ + ++  + +    D+
Sbjct: 374 KDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDN 433

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
           A    + M S G+  N      L +   KN   E A  + E   +S  + D+  Y 
Sbjct: 434 AQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYN 489



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 164/351 (46%), Gaps = 10/351 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  + D L + R  D  L+LF EM  D+      +F+ Y+ +I  L    +   +     
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEM--DNKGIRPDVFT-YSSLISCLCNYGRWSDASRLLS 299

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +L+     +  ++N L+  F  +G   +A ++++ M +     +  TY  +I       
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           RLD A ++F  M  ++  P    + +L++   KA ++   M+++ +M   G   +   Y 
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +LI  + +A   D A  ++ +M   G  PN   +  +++   K+GKL+ AM +F  ++++
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS 479

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
              P   TY+ + E    +G+V+    L+ S++  G++P +  Y  +++   K+ L + A
Sbjct: 480 KMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEA 539

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGS------VDHALRWLRFMGSS 543
             + ++MK  G   D    + L+  +++DG       +   +R  RF G +
Sbjct: 540 YTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDA 590



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 121/277 (43%), Gaps = 3/277 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           LFDEM+  S    I     YN +I      D+L+ +   F  ++  DC  D  +YN L+ 
Sbjct: 332 LFDEMIQRSIDPNIV---TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIN 388

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            F          E++  M +     +  TY  +I    ++   D A  +F++M      P
Sbjct: 389 GFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHP 448

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +   + +L+D + K G+L+ +M V+  +Q     P    Y  + E   KAGK++    L+
Sbjct: 449 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLF 508

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             + + G +P+   +  +I    K G  + A ++F  M+  G LP   TY+ L+  H   
Sbjct: 509 CSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRD 568

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           G   ++ +L   M S       STY  +  +L   +L
Sbjct: 569 GDKAASAELIKEMRSCRFAGDASTYGLVTDMLHDGRL 605



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 135/300 (45%), Gaps = 3/300 (1%)

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           E ME    S +  TY +MI  L +  +L  A+ +  +M +  + PS     SL++     
Sbjct: 89  EKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHG 148

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
            R+  ++ +  +M   G++P    + +L+    +  K   A+ L + M + G +P+   +
Sbjct: 149 NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 208

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +I    K G+ D+A+++   ME+         YS +++       VD A+ L+  M +
Sbjct: 209 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDN 268

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDH 532
            G+RP + TY++L++ L        A+++L +M     + +V   + L+  + K+G +  
Sbjct: 269 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIE 328

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           A +    M    I  N      L    CM + L E A+ +    V      D+V Y +++
Sbjct: 329 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE-AQQIFTLMVSKDCLPDVVTYNTLI 387



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/381 (19%), Positives = 160/381 (41%), Gaps = 3/381 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L +  +L  +     K++         + N L+  F +     +A  + + M
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D  T+  ++  L +  +   A+ L + M  +  +P    + ++++ + K G  
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 221

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ +  +M+         +Y ++I+S  K   +D AL L+ EM   G RP+   ++ +
Sbjct: 222 DLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSL 281

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I      G+   A  + +DM      P   T++ L++  A  G++  A KL++ M    +
Sbjct: 282 ISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 341

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P + TY +L+        +D A +I   M +     DV   + L+  + K   V   + 
Sbjct: 342 DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME 401

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             R M   G+  N      L     + +  ++A+ + +  V      +++ Y ++L  L 
Sbjct: 402 LFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL- 460

Query: 596 RCQDEQNERHLMAILSATKHK 616
            C++ + E+ ++      K K
Sbjct: 461 -CKNGKLEKAMVVFEYLQKSK 480



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 120/282 (42%), Gaps = 1/282 (0%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++ ++AK  + D  I   ++M+      +   +  +++ + +  +L  ++ +  +M   G
Sbjct: 71  LLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLG 130

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           + PS     SL+  +    ++  A+ L D+M   G++P+   FT ++    +  K   A+
Sbjct: 131 YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAV 190

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           ++   M   G  P   TY  ++      G+ D A+ L N M    +   +  Y+ ++  L
Sbjct: 191 ALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSL 250

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549
            K + VD A  +  EM   G   DV + S ++      G    A R L  M    I  N 
Sbjct: 251 CKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNV 310

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                L ++  K      A+ L +  ++ +   ++V Y S++
Sbjct: 311 VTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLI 352


>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 484

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 194/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNXIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E     GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 151/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTREHKLWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y  M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +++L EM+  G+   V   +VLM
Sbjct: 387 TGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLM 429



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 161/385 (41%), Gaps = 3/385 (0%)

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC--KIDTQSYNVLMTLFLNKGLPYKAFE 291
           +FS    +IQ +        +   F  +L++    + D   ++ L+T +L  G    A E
Sbjct: 34  MFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIE 93

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
            Y    + +  +   T   ++  L K          ++E+ E  +  S   F  L+    
Sbjct: 94  CYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 153

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K G +  +  V+  +   G RPS   Y +L+  Y + G LD   RL   M  +G +P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXY 213

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            ++++I    K  K+D A  +F +M   G +P   T++ L++ H   G+VD AM++Y  M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRM 273

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSV 530
            S  L P L TY  L+  L K+  +  A  ++ EM   G   D ++ + ++    K+G +
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDL 333

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D A    + M    IR ++     L     +      A+ +L   +    K D   YT +
Sbjct: 334 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMI 393

Query: 591 LAHLVRCQDEQNERHLMAILSATKH 615
           +    +  D      L+  +    H
Sbjct: 394 INEFCKKGDVWKGSRLLKEMQRNGH 418


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 190/421 (45%), Gaps = 7/421 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
           D +++LF+   R S  +P    +   F  +  ++ F+ +L    ++      NGI+    
Sbjct: 60  DDAIALFQEMIR-SRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQL----ELNGIAHNIY 114

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             N +I    +  K   +Y    KV+    + DT ++N L+     +G   +A  + + M
Sbjct: 115 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRM 174

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C  D  TY  ++  + +SG    A+ L ++M+ERN +     +++++DS+ + G +
Sbjct: 175 VENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCI 234

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ ++ EM+  G + S   Y SL+    KAGK +    L  +M      PN   F ++
Sbjct: 235 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 294

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K GKL  A  ++ +M   G  P   TY+ L++ +    ++  A  + + M     
Sbjct: 295 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 354

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P + T+T+L+      K VD   K+   +   G   + V+ S ++  + + G +  A  
Sbjct: 355 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 414

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             + M S G+  +      L +    N   E A  + E   +S   + +V+YT+++  + 
Sbjct: 415 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 474

Query: 596 R 596
           +
Sbjct: 475 K 475



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 187/432 (43%), Gaps = 51/432 (11%)

Query: 173 VINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           +    DTSL+L    K +   V  D   Y  + D L      D  +SLF EM     K+ 
Sbjct: 193 ICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSS 252

Query: 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291
           +     YN +++ L KA K        K ++  +   +  ++NVL+ +F+ +G   +A E
Sbjct: 253 VV---TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 309

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +Y+ M     S +  TY  ++       RL  A  +   M      P    F SL+    
Sbjct: 310 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 369

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
              R+D  MKV+  +   G   +A  Y  L++ + ++GK+  A  L+ EM   G  P+  
Sbjct: 370 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 429

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            + ++++    +GKL+ A+ IF D++++        Y+ ++E     G+V+ A  L+ S+
Sbjct: 430 TYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL 489

Query: 472 TSAGLRPGLSTYTALLTLLAK-----------RKL------------------------V 496
              G++P + TYT +++ L K           RK+                        +
Sbjct: 490 PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDL 549

Query: 497 DVAAKILLEMKTMGYSVDVSA----SDVLMVYIKDGSVDHALR--------WLRFMGSSG 544
             +AK++ EMK+ G+S D S+     D+L+  +K  ++ + L          L   GS  
Sbjct: 550 TASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDLLELSGSEK 609

Query: 545 IRTNNFIVRQLF 556
           IR ++    ++F
Sbjct: 610 IRLSSLTFVKMF 621



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 166/362 (45%), Gaps = 1/362 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + +N +I+ L    K+  +     +++++ C+ D  +YN ++      G    A ++   
Sbjct: 149 TTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRK 208

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+     D  TY  +I SL + G +DAAI LF+EM+ +  + S   + SLV  + KAG+
Sbjct: 209 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 268

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +    +  +M      P+   +  L++ + K GKL  A  L+ EM   G  PN   +  
Sbjct: 269 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 328

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++ +    +L  A ++   M R    P   T++ L++ +    +VD  MK++ +++  G
Sbjct: 329 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 388

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHAL 534
           L     TY+ L+    +   + +A ++  EM + G   DV    +L+  + D G ++ AL
Sbjct: 389 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 448

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                +  S +     +   + E   K    E A  L  +      K +++ YT +++ L
Sbjct: 449 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 508

Query: 595 VR 596
            +
Sbjct: 509 CK 510


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 150/343 (43%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   +  ++       +  F   N
Sbjct: 87  AIECYRLTREHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYKXILECGYPASLYFF---N 142

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 143 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 202

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 203 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 262

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y  M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 263 MEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDG 322

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 323 CCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPN 382

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 383 XRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 425



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 141/332 (42%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L       A E Y    + +  +   T   ++  L K          +
Sbjct: 67  DIFVFSGLITAYLESEFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 126

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           + + E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 127 KXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 186

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 187 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 246

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 247 TTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSM 306

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A    + M    I  ++     L     +      
Sbjct: 307 KGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVD 366

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K +   YT ++    +  D
Sbjct: 367 AEKMLREMLSVGLKPNXRTYTMIINEFCKKGD 398



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 139/319 (43%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +S  L  AI+ ++  +E  F   F+    +++ + K     
Sbjct: 61  KGTQRSDIFVFSGLITAYLESEFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFK 120

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y  +  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 121 LVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 180

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 181 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 240

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I   M +     D+   + L+  + K G +  A   
Sbjct: 241 PNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHL 300

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L + C K    ++A    +  ++    +D V YT++++ L  
Sbjct: 301 IDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGL-- 358

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 359 CQEGRSVDAEKMLREMLSV 377


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 168/371 (45%), Gaps = 6/371 (1%)

Query: 215 GMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           GM +L D MV    +NGI      YN +I   AK  K++ +   F K+       D  +Y
Sbjct: 324 GMHALLDLMV----RNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTY 379

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
             ++ +    G    A   +E M     S     Y  +I  L    + + A +L  EM +
Sbjct: 380 GAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD 439

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R    +   F S++DS  K GR+  S K++  M   G +P    Y +LI+ Y  AGK+D 
Sbjct: 440 RGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 499

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A++L   M   G +PN   +  +I  + K  ++  A+ +F +ME +G  P   TY+ +L+
Sbjct: 500 AMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQ 559

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
               + +  +A +LY  +T +G +  LSTY  +L  L K KL D A ++   +  M   +
Sbjct: 560 GLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKL 619

Query: 514 DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           +    ++++   +K G    A        S+G+  N +  R + E+ +   L E    L 
Sbjct: 620 EARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 679

Query: 573 ETYVESAAKVD 583
            +  ++   VD
Sbjct: 680 LSMEDNGCTVD 690



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 145/328 (44%), Gaps = 34/328 (10%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y  L+  +  KG       + + M +     D   Y ++I + AK G++D A+ +F
Sbjct: 305 DIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVF 364

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +M+++   P    + +++  + K+GR++ +M  + +M   G  P   +Y SLI      
Sbjct: 365 SKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 424

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            K + A  L  EM   G   N   F  II+SH K G++  +  +F  M R G  P   TY
Sbjct: 425 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 484

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S L++ +  +G++D AMKL + M S GL+P   TY  L+    K   +  A  +  EM++
Sbjct: 485 STLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMES 544

Query: 509 MGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
            G S D                              I T N I++ LF++    A    A
Sbjct: 545 SGVSPD------------------------------IITYNIILQGLFQTRRTAA----A 570

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVR 596
           K L     ES  +++L  Y  +L  L +
Sbjct: 571 KELYVRITESGTQIELSTYNIILHGLCK 598



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 151/330 (45%), Gaps = 8/330 (2%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  SY  ++  F  +G   KA+  Y  M     S D  TY  +I +L K   +D A+++ 
Sbjct: 195 DVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA-----PMYVSLIE 383
             M +    P+   + S++     +G+   ++    +++  G  P         Y +L++
Sbjct: 255 TSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQ 314

Query: 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443
            YA  G L     L D M   G  P+  ++ ++I ++AK GK+D AM +F+ M + G  P
Sbjct: 315 GYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNP 374

Query: 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
              TY  ++ +   SG+V+ AM  +  M   GL PG   Y +L+  L      + A +++
Sbjct: 375 DAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 434

Query: 504 LEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMK 561
           LEM   G  ++ +  + ++  + K+G V  + +    M   G++ +      L +  C+ 
Sbjct: 435 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 494

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVL 591
             + E+ K LL   V    K + V Y +++
Sbjct: 495 GKMDEAMK-LLSGMVSVGLKPNTVTYRTLI 523



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 153/385 (39%), Gaps = 10/385 (2%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +S ++ M    +         Y  +I    +AD+L++ +     V+    +++  ++  L
Sbjct: 69  VSRYNRMARAGAGKVTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPL 128

Query: 277 MTLFLNKGLPYKAFEIY-ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER- 334
           +           A +I    M +  C  D  +  +++  L    R   A++L   M +  
Sbjct: 129 LKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGR 188

Query: 335 --NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                P    + ++++   K G    +   Y EM      P    Y S+I +  K   +D
Sbjct: 189 GGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMD 248

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT-----DMERAGFLPTPST 447
            A+ +   M   G  PN   +T I+  +  SG+   A+          +E  G  P  +T
Sbjct: 249 KAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIAT 308

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y  LL+ +A+ G +     L + M   G+ P    Y  L+   AK+  VD A  +  +M+
Sbjct: 309 YCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMR 368

Query: 508 TMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G + D V+   V+ +  K G V+ A+ +   M   G+   N +   L         +E
Sbjct: 369 QQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 428

Query: 567 SAKPLLETYVESAAKVDLVLYTSVL 591
            A+ L+   ++    ++ + + S++
Sbjct: 429 RAEELILEMLDRGICLNTIFFNSII 453



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 140/375 (37%), Gaps = 51/375 (13%)

Query: 286 PYKAFEIYESMEK---GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           P  A   Y  M +   G+ +    TY ++I    ++ RLD        + ++ FR     
Sbjct: 65  PAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAIT 124

Query: 343 FASLVDSMGKAGRLDTSMKVYM-------------------------------------- 364
           F  L+  +    R   +M + +                                      
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMM 184

Query: 365 -EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            + +G G  P    Y ++I  + K G    A   + EM      P+   ++ II +  K 
Sbjct: 185 ADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKG 244

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS-----AGLRP 478
             +D AM + T M + G +P   TY+ ++  + SSGQ   A+     + S      GL P
Sbjct: 245 QAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEP 304

Query: 479 GLSTYTALLTLLA-KRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
            ++TY  LL   A K  LV + A + L ++  G   D    ++L+  Y K G VD A+  
Sbjct: 305 DIATYCTLLQGYATKGALVGMHALLDLMVRN-GIHPDHYVYNILICAYAKQGKVDEAMLV 363

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              M   G+  +      +     K+   E A    E  ++       ++Y S++  L  
Sbjct: 364 FSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCT 423

Query: 597 CQD-EQNERHLMAIL 610
           C   E+ E  ++ +L
Sbjct: 424 CNKWERAEELILEML 438



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/384 (18%), Positives = 143/384 (37%), Gaps = 38/384 (9%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    Y  +  +L +S   +  +  F++M+ +    G  +   YN +I  L   
Sbjct: 368 RQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIV---YNSLIHGLCTC 424

Query: 249 DK-----------LEMSYCC----FKKVLDSDCK--------------------IDTQSY 273
           +K           L+   C     F  ++DS CK                     D  +Y
Sbjct: 425 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 484

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + L+  +   G   +A ++   M       +  TY  +I    K  R+  A+ LF+EM+ 
Sbjct: 485 STLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMES 544

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P    +  ++  + +  R   + ++Y+ +   G +     Y  ++    K    D 
Sbjct: 545 SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 604

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           ALR++  + +   +     F ++I++  K G+   A  +F      G +P   TY  + E
Sbjct: 605 ALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAE 664

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G ++   +L+ SM   G          ++  L +R  +  A   L  +    +S+
Sbjct: 665 NIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSL 724

Query: 514 DVSASDVLMVYIKDGSVDHALRWL 537
           + S + + +  +  G      R+L
Sbjct: 725 EASTASLFIDLLSGGKYQEYHRFL 748


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 155/339 (45%), Gaps = 3/339 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AY  V++ L   ++ E +     ++L SDC  D  ++N ++     KGL  +A  + E M
Sbjct: 463 AYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQM 522

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  CS D  TY  +I  L     +D A++L  +++    +P    F +L+  +    R 
Sbjct: 523 SENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRW 582

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + ++   M      P    + ++I S  + G L  A+     M   G  PN   ++++
Sbjct: 583 EDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIV 642

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +++  K+GK   A+ + + M      P   TY+ ++     +G+++ A+ L   M S GL
Sbjct: 643 VDALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGL 700

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS-ASDVLMVYIKDGSVDHALR 535
            P  +TY +L   + +    D A ++L  ++  G S D +  +DVL+ + +D   D A+ 
Sbjct: 701 CPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAID 760

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
               M SSG   +      L E+     L + AK LL +
Sbjct: 761 CFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLAS 799



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/416 (20%), Positives = 173/416 (41%), Gaps = 41/416 (9%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L++FD+M+H      +  +S    ++    K      +     ++    C+ D  +YNVL
Sbjct: 271 LAVFDDMLHRGCSPSVVTYSI---LLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVL 327

Query: 277 MTLFLNKG-----------LPYKAF------------------------EIYESMEKGEC 301
           +    N+G           LP                            E+   M    C
Sbjct: 328 INAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNC 387

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           + D  T+  ++ SL + G +D AI++   M E         ++S++D +   GR+D +++
Sbjct: 388 APDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVE 447

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           +   ++  G +P    Y ++++      + + A  L  EM  +   P+   F  ++ S  
Sbjct: 448 LLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLC 507

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           + G +D A+ +   M   G  P   TY+C+++   +   +D AM+L + + S G +P + 
Sbjct: 508 QKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIV 567

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFM 540
           T+  LL  L      + A +++  M       D ++ + V+    + G +  A+  L+ M
Sbjct: 568 TFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIM 627

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             +G   N+     + ++ +K    ++A  LL          DL+ Y +V+++L +
Sbjct: 628 AENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTP--DLITYNTVISNLTK 681



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 153/346 (44%), Gaps = 11/346 (3%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           DT ++N L+     +G    A  +++ M    CS    TY +++ +  K      A+ L 
Sbjct: 250 DTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALL 309

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM+ +   P    +  L+++M   G +D ++ +   +   G +P A  Y  +++S   +
Sbjct: 310 DEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGS 369

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            +      L  EM      P+   F  I+ S  + G +D A+ +   M   G +    TY
Sbjct: 370 ERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTY 429

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S +L+     G+VD A++L + + S G +P    YT +L  L   +  + A +++ EM  
Sbjct: 430 SSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLC 489

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSG----IRTNNFIVRQLF-ESCMKN 562
                D V+ + V+    + G VD A+R +  M  +G    I T N I+  L  ESC+ +
Sbjct: 490 SDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDD 549

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
           A+      LL        K D+V + ++L  L      ++   LMA
Sbjct: 550 AME-----LLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMA 590



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 129/277 (46%), Gaps = 5/277 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  + D L      D  + L  ++     K  I  F   N +++ L   D+ E +     
Sbjct: 534 YNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTF---NTLLKGLCGVDRWEDAEQLMA 590

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++ S+C  D  ++N ++T    KGL  +A E  + M +  C  + STY +++ +L K+G
Sbjct: 591 NMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAG 650

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +  AA++L   M   N  P    + +++ ++ KAG+++ ++ +   M   G  P    Y 
Sbjct: 651 KAQAALELLSGMT--NGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYR 708

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SL     +    D A+R+   ++  G  P+   +  ++    +  + D+A+  F  M  +
Sbjct: 709 SLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSS 768

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           G +P  STY  LLE  A  G +D A +L  S+ S G+
Sbjct: 769 GCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGV 805



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 182/409 (44%), Gaps = 14/409 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L + +    D D  L++   +  H    + ++    Y  V++ L  +++ +      
Sbjct: 324 YNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVT----YTPVLKSLCGSERWKEVEELL 379

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++  ++C  D  ++N ++T    +GL  +A E+ + M +  C  D  TY  ++  L   
Sbjct: 380 AEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDV 439

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR+D A++L   +K    +P    + +++  +    + + + ++  EM      P    +
Sbjct: 440 GRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTF 499

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +++ S  + G +D A+R+ ++M   G  P+   +  II+       +D AM + +D++ 
Sbjct: 500 NTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQS 559

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P   T++ LL+      + + A +L  +M  +   P   T+  ++T L ++ L+  
Sbjct: 560 CGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQ 619

Query: 499 AAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFM--GSSGIRTNNFIVRQL 555
           A + L  M   G   + S  S V+   +K G    AL  L  M  G+  + T N ++  L
Sbjct: 620 AIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISNL 679

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
                K    E A  LL   V +    D   Y S LA+ V C+++  +R
Sbjct: 680 ----TKAGKMEEALDLLRVMVSNGLCPDTTTYRS-LAYGV-CREDGTDR 722



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 138/304 (45%), Gaps = 6/304 (1%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY  M+    ++GR++ A +L   M    F P    F  L+ ++   GR+  ++ V+ +M
Sbjct: 221 TYNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVRGRIPDALAVFDDM 277

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G  PS   Y  L+++  K      A+ L DEMR  G  P+   + ++I +    G +
Sbjct: 278 LHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDV 337

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           D A++I +++   G  P   TY+ +L+    S +     +L   MTS    P   T+  +
Sbjct: 338 DEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTI 397

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           +T L ++ LVD A +++  M   G   D V+ S +L      G VD A+  L  + S G 
Sbjct: 398 VTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGC 457

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
           + +      + +       +E A+ L+   + S    D V + +V+A L  CQ    +R 
Sbjct: 458 KPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASL--CQKGLVDRA 515

Query: 606 LMAI 609
           +  +
Sbjct: 516 IRVV 519



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/362 (19%), Positives = 157/362 (43%), Gaps = 3/362 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N +I+ L    ++  +   F  +L   C     +Y++L+     +    +A  + + M 
Sbjct: 254 FNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMR 313

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  D  TY ++I ++   G +D A+ +   +     +P    +  ++ S+  + R  
Sbjct: 314 AKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWK 373

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              ++  EM      P    + +++ S  + G +D A+ + D M   G   +   ++ I+
Sbjct: 374 EVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSIL 433

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +     G++D A+ + + ++  G  P    Y+ +L+   S+ Q + A +L   M  +   
Sbjct: 434 DGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCP 493

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+  ++  L ++ LVD A +++ +M   G S D+   + ++  +  +  +D A+  
Sbjct: 494 PDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMEL 553

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  + S G + +      L +       +E A+ L+   + S    D + + +V+  L  
Sbjct: 554 LSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSL-- 611

Query: 597 CQ 598
           CQ
Sbjct: 612 CQ 613



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 167/401 (41%), Gaps = 19/401 (4%)

Query: 118 DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDS 177
           DH+   G     +  S++   +  V R     EL ++L      P  +  T  LK +   
Sbjct: 415 DHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL--- 471

Query: 178 DTSLSLFRWAKRQSWY-------VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN 230
               S  +W + +           P DE   + F+ +  S    G++     +V   S+N
Sbjct: 472 ---CSTEQWERAEELMAEMLCSDCPPDE---VTFNTVVASLCQKGLVDRAIRVVEQMSEN 525

Query: 231 GISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
           G S     YN +I  L     ++ +      +    CK D  ++N L+           A
Sbjct: 526 GCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDA 585

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            ++  +M +  C  D  T+  +I SL + G L  AI+  + M E    P+ + ++ +VD+
Sbjct: 586 EQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDA 645

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + KAG+   ++++   M      P    Y ++I +  KAGK++ AL L   M   G  P+
Sbjct: 646 LLKAGKAQAALELLSGMTN--GTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPD 703

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              +  +     +    D A+ +   ++  G  P  + Y+ +L       + D A+  + 
Sbjct: 704 TTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFA 763

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            M S+G  P  STY  LL  LA   L+D A ++L  + ++G
Sbjct: 764 HMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLG 804



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 92/205 (44%), Gaps = 2/205 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N VI  L +   L  +    K + ++ C  ++ +Y++++   L  G    A E+   M 
Sbjct: 604 FNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMT 663

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
            G  + D  TY  +I +L K+G+++ A+ L + M      P    + SL   + +    D
Sbjct: 664 NG--TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTD 721

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++++   +Q  G  P    Y  ++  + +  + D A+  +  M  +G  P+   + +++
Sbjct: 722 RAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILL 781

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFL 442
           E+ A  G LD A  +   +   G L
Sbjct: 782 EALAYGGLLDEAKRLLASLCSLGVL 806



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 106/273 (38%), Gaps = 40/273 (14%)

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFR--PNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           + S  + G++D AL L+D M   G R  P      ++I+     G++  A  +F  +   
Sbjct: 157 LRSLVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAAL--- 213

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT--------------------------- 472
           G   T  TY+ ++  +  +G+++ A +L N M                            
Sbjct: 214 GPSATVVTYNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAV 273

Query: 473 -----SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIK 526
                  G  P + TY+ LL    K      A  +L EM+  G   D+   +VL+     
Sbjct: 274 FDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCN 333

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
           +G VD AL  L  + S G + +      + +S   +  ++  + LL     +    D V 
Sbjct: 334 EGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVT 393

Query: 587 YTSVLAHLVRCQDEQNERHLMAILSATKHKAHA 619
           + +++  L  CQ    +R +  +   ++H   A
Sbjct: 394 FNTIVTSL--CQQGLVDRAIEVVDHMSEHGCVA 424


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+  +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A+     M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 149/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+V  AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ AL + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 149/326 (45%), Gaps = 8/326 (2%)

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           EI E+  KG  + D   +  +I +  +SG L  AI+ ++  KE  FR  F+    +++ +
Sbjct: 54  EILET--KGTQTSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHL 111

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K          Y E   CG+  S   +  L+ S+ K G++  A  ++D +   G RP+ 
Sbjct: 112 MKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSV 171

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             F  ++  + K G LD    +   M+ +G  P   TYS L+       ++D A +L++ 
Sbjct: 172 VSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDE 231

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGS 529
           M   GL P   T+T L+    K   V +A +I  +M +   S D+   + L+  + K G 
Sbjct: 232 MLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +  A   +  M   G++ +      L +   K    E+A    +  ++   ++D V YT+
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTA 351

Query: 590 VLAHLVRCQDEQN---ERHLMAILSA 612
           +++ L  CQ+ ++   E+ L  +LS 
Sbjct: 352 LISGL--CQEGRSVDAEKMLREMLSV 375



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 95/211 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+++    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Brachypodium distachyon]
          Length = 637

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 156/359 (43%), Gaps = 37/359 (10%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAK 247
           +Q + VP    Y +L  +  ++      LS FDEMV      G +L   AYN VI+ L K
Sbjct: 248 KQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMV----SRGCALNLIAYNTVIEALGK 303

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE------------IYES 295
              ++       K+++SDC+ +  +Y++ + +   +G  ++  E            IY  
Sbjct: 304 NKMVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLNEVLDICDRYLNKSIYSY 363

Query: 296 MEKGEC--------------------SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           + K  C                    S D   +  M+  L  SG+   AI L   M E+ 
Sbjct: 364 LVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKG 423

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
                 ++  +  ++GK  ++     ++ +M+  G  P    Y  +I SY + G +D A 
Sbjct: 424 IDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKAS 483

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            L++EM  +  +P+   +  +I    K+G LD A  +F +M+  G+ P   TYS L+E  
Sbjct: 484 GLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECF 543

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
             S +VD A  L++ M + G  P + TY  LL  L +R     A K    MK  G + D
Sbjct: 544 GKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPD 602



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 180/443 (40%), Gaps = 42/443 (9%)

Query: 185 RWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244
           +W  R + Y      Y  +      SR+      +++EM     K  + +F AYN ++  
Sbjct: 179 KWGLRLNGYT-----YKCIVQAHLRSREVSKGFEVYEEMHRKGYK--LDIF-AYNMLLDA 230

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
           LAKA  ++ +Y  F+ +    C  D  +Y +L+ +    G  YK    ++ M    C+L+
Sbjct: 231 LAKAGMVDQAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALN 290

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF------------------------ 340
              Y  +I +L K+  +D  I +  +M E + +P+                         
Sbjct: 291 LIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLNEVLD 350

Query: 341 --------NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
                   +I++ LV S+ K+G    +  V+  M           ++S++E    +GK  
Sbjct: 351 ICDRYLNKSIYSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTL 410

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A+ L   M   G   + G++ M+  +  K  ++    ++F  M+ +G  P   TY+ ++
Sbjct: 411 EAIDLLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMI 470

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             +   G VD A  L+  M ++  +P + TY  L+  L K   +D A  +  EM+  GY 
Sbjct: 471 SSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYD 530

Query: 513 VDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            DV + S ++  + K   VD A      M + G   N      L +   +      A   
Sbjct: 531 PDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKH 590

Query: 572 LETYVESAAKVDLVLYTSVLAHL 594
            ET  +     D + Y S+L  L
Sbjct: 591 YETMKQQGLTPDSITY-SILERL 612



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 124/259 (47%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S Y+ +++ L K+     ++  F ++ +S    D  ++  ++ +  N G   +A ++   
Sbjct: 359 SIYSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHM 418

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M +     D   Y ++  +L K  ++     LF +MK     P    +  ++ S G+ G 
Sbjct: 419 MPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGL 478

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D +  ++ EM+    +P    Y +LI    K G LD A  L+ EM+  G+ P+   ++ 
Sbjct: 479 VDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYST 538

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +IE   KS K+D+A S+F +M   G +P   TY+ LL+     G+   A K Y +M   G
Sbjct: 539 LIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQG 598

Query: 476 LRPGLSTYTALLTLLAKRK 494
           L P   TY+ L  L ++ +
Sbjct: 599 LTPDSITYSILERLESRSQ 617



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 1/187 (0%)

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +++ M+    + D  TY +MI S  + G +D A  LF+EM+  + +P    + +L++ +G
Sbjct: 450 LFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLG 509

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K G LD +  ++ EMQ  G+ P    Y +LIE + K+ K+D A  L+DEM   G  PN  
Sbjct: 510 KNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIV 569

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            + ++++   + GK   A   +  M++ G  P   TYS +LE   S  Q  + ++  + +
Sbjct: 570 TYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYS-ILERLESRSQRTARIRKPSRV 628

Query: 472 TSAGLRP 478
           TS  + P
Sbjct: 629 TSWVVSP 635



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 13/231 (5%)

Query: 208 NESRDFDGMLSLFD------------EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMS 254
           +ES D D  +S+ +            +++H   + GI      YN V   L K  ++   
Sbjct: 388 HESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFI 447

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F K+  S    D  +YN++++ +   GL  KA  ++E ME   C  D  TY  +I  
Sbjct: 448 STLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINC 507

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L K+G LD A  LF+EM+E+ + P    +++L++  GK+ ++D +  ++ EM   G  P+
Sbjct: 508 LGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPN 567

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
              Y  L++   + GK   A + ++ M+  G  P+   ++++    ++S +
Sbjct: 568 IVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSILERLESRSQR 618



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 154/370 (41%), Gaps = 37/370 (10%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           +++  +Y  ++   L      K FE+YE M +    LD   Y +++ +LAK+G +D A +
Sbjct: 183 RLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQ 242

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           +F++MK++   P    +  L+   GK G+    +  + EM   G   +   Y ++IE+  
Sbjct: 243 VFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALG 302

Query: 387 KAGKLDTALRLWDEMRIAGFRPNF--------------------------------GLFT 414
           K   +D  + +  +M  +  +PN                                  +++
Sbjct: 303 KNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLNEVLDICDRYLNKSIYS 362

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +++S  KSG    A ++F  M  +        +  +LE+  +SG+   A+ L + M   
Sbjct: 363 YLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEK 422

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           G+   +  Y  + + L K K V   + +  +MK  G + D+   ++++  Y + G VD A
Sbjct: 423 GIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKA 482

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
                 M +S  + +      L     KN   + A  L +   E     D+  Y++    
Sbjct: 483 SGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYST---- 538

Query: 594 LVRCQDEQNE 603
           L+ C  + N+
Sbjct: 539 LIECFGKSNK 548


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A  LF EM ++   P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G  P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M + GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 149/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +     RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+++G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLNVGLKPEIGTYTMIINEFCKKGD 396



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD     +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +   P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 115/272 (42%), Gaps = 36/272 (13%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           R    +F+ L+ +  ++G L  +++ Y   +    R        ++E   K         
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
            ++E    G+  +   F +++ S  K G++ +A S+F  + +    P+  +++ L+  + 
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYI 182

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-V 515
             G +D   +L N+M  +G++P + TY+ L+  L K   +D A  +  EM   G   + V
Sbjct: 183 KLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           + + ++  + K+G VD A+                I +Q+        L +S  P     
Sbjct: 243 TFTTLIDGHCKNGRVDLAME---------------IYKQM--------LSQSLSP----- 274

Query: 576 VESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
                  DL+ Y +++  L +  D +  + L+
Sbjct: 275 -------DLITYNTLIYGLCKKGDLKQAQDLI 299


>gi|302781402|ref|XP_002972475.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
 gi|300159942|gb|EFJ26561.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
          Length = 406

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 153/306 (50%), Gaps = 5/306 (1%)

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243
           +R++  + +  P +  Y  L +   +  D +  L L +EM+    +  ++LF   N ++ 
Sbjct: 104 WRFSYMKKYCDPDEFTYAALINGFCKCMDTEVTLELLEEMLARGLRPNLALF---NMMMD 160

Query: 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303
             +++ K E     F+++++ +C+ D +SY VL+  F   G   +AF   +     E + 
Sbjct: 161 AHSRSGKHEQVIALFERMVEHECRPDPKSYRVLVEAFAVSGRIDEAFGFVQRYADSENAP 220

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKV 362
               Y  ++  L K+ +  AA+++F ++K+R N++P    +  L+D +GK G++D     
Sbjct: 221 HLGAYNTLMNRLGKANKAHAALEIFYKIKDRPNYKPDLVTYNVLIDLLGKVGKIDECWSC 280

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           Y +M+    +P    Y +L+    +AG++D    + D+M   G + +   + +++E +A+
Sbjct: 281 YQKMR-LHFQPDIFSYNTLLGRLGRAGRVDLFASVLDDMSRDGVQQDRITYAILVEGYAR 339

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           +G LD+A++   +M+ +GF PTPS    L+     +G+  +A  +   M +    PG   
Sbjct: 340 AGNLDVALAYLEEMKSSGFSPTPSALEVLVNSLLKAGRFGAAEAVVQEMAAINGGPGKKI 399

Query: 483 YTALLT 488
            T  L 
Sbjct: 400 VTGTLA 405



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 129/273 (47%), Gaps = 2/273 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I    K    E++    +++L    + +   +N++M      G   +   ++E M 
Sbjct: 120 YAALINGFCKCMDTEVTLELLEEMLARGLRPNLALFNMMMDAHSRSGKHEQVIALFERMV 179

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           + EC  D  +Y +++ + A SGR+D A    Q   +    P    + +L++ +GKA +  
Sbjct: 180 EHECRPDPKSYRVLVEAFAVSGRIDEAFGFVQRYADSENAPHLGAYNTLMNRLGKANKAH 239

Query: 358 TSMKVYMEMQG-CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            +++++ +++    ++P    Y  LI+   K GK+D     + +MR+  F+P+   +  +
Sbjct: 240 AALEIFYKIKDRPNYKPDLVTYNVLIDLLGKVGKIDECWSCYQKMRLH-FQPDIFSYNTL 298

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    ++G++D+  S+  DM R G      TY+ L+E +A +G +D A+     M S+G 
Sbjct: 299 LGRLGRAGRVDLFASVLDDMSRDGVQQDRITYAILVEGYARAGNLDVALAYLEEMKSSGF 358

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            P  S    L+  L K      A  ++ EM  +
Sbjct: 359 SPTPSALEVLVNSLLKAGRFGAAEAVVQEMAAI 391



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 160/375 (42%), Gaps = 37/375 (9%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           +  Y  +++    A  +E +   F K+  S+ K     Y+ +M   +    P     I+E
Sbjct: 13  YVTYRILLRIYVDASMVEDALETFHKMEFSEIKPTLDDYHYIMFKLIRLKCPRVVPMIFE 72

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRL--------------------------------- 321
           SM K     +  TY  +I SL   G++                                 
Sbjct: 73  SMRKNLVRPNTQTYNFLISSLCSLGKMAEARWRFSYMKKYCDPDEFTYAALINGFCKCMD 132

Query: 322 -DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
            +  ++L +EM  R  RP+  +F  ++D+  ++G+ +  + ++  M     RP    Y  
Sbjct: 133 TEVTLELLEEMLARGLRPNLALFNMMMDAHSRSGKHEQVIALFERMVEHECRPDPKSYRV 192

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM-ERA 439
           L+E++A +G++D A         +   P+ G +  ++    K+ K   A+ IF  + +R 
Sbjct: 193 LVEAFAVSGRIDEAFGFVQRYADSENAPHLGAYNTLMNRLGKANKAHAALEIFYKIKDRP 252

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
            + P   TY+ L+++    G++D     Y  M     +P + +Y  LL  L +   VD+ 
Sbjct: 253 NYKPDLVTYNVLIDLLGKVGKIDECWSCYQKM-RLHFQPDIFSYNTLLGRLGRAGRVDLF 311

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
           A +L +M   G   D ++ + ++  Y + G++D AL +L  M SSG       +  L  S
Sbjct: 312 ASVLDDMSRDGVQQDRITYAILVEGYARAGNLDVALAYLEEMKSSGFSPTPSALEVLVNS 371

Query: 559 CMKNALYESAKPLLE 573
            +K   + +A+ +++
Sbjct: 372 LLKAGRFGAAEAVVQ 386



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 41/201 (20%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGIS 233
           N +  +L +F   K +  Y P    Y +L D+L +    D   S + +M +H        
Sbjct: 236 NKAHAALEIFYKIKDRPNYKPDLVTYNVLIDLLGKVGKIDECWSCYQKMRLHFQP----D 291

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
           +FS YN ++  L +A ++++    F  VLD                              
Sbjct: 292 IFS-YNTLLGRLGRAGRVDL----FASVLD------------------------------ 316

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
             M +     D  TY +++   A++G LD A+   +EMK   F P+ +    LV+S+ KA
Sbjct: 317 -DMSRDGVQQDRITYAILVEGYARAGNLDVALAYLEEMKSSGFSPTPSALEVLVNSLLKA 375

Query: 354 GRLDTSMKVYMEMQGCGHRPS 374
           GR   +  V  EM      P 
Sbjct: 376 GRFGAAEAVVQEMAAINGGPG 396



 Score = 46.2 bits (108), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 7/208 (3%)

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            ME+    +   TY +++     +  ++ A++ F +M+    +P+ + +  +   M K  
Sbjct: 3   GMEEQMIPMTYVTYRILLRIYVDASMVEDALETFHKMEFSEIKPTLDDYHYI---MFKLI 59

Query: 355 RLDTSMKVYM---EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           RL     V M    M+    RP+   Y  LI S    GK+  A   +  M+     P+  
Sbjct: 60  RLKCPRVVPMIFESMRKNLVRPNTQTYNFLISSLCSLGKMAEARWRFSYMK-KYCDPDEF 118

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +  +I    K    ++ + +  +M   G  P  + ++ +++ H+ SG+ +  + L+  M
Sbjct: 119 TYAALINGFCKCMDTEVTLELLEEMLARGLRPNLALFNMMMDAHSRSGKHEQVIALFERM 178

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVA 499
                RP   +Y  L+   A    +D A
Sbjct: 179 VEHECRPDPKSYRVLVEAFAVSGRIDEA 206


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 175/397 (44%), Gaps = 39/397 (9%)

Query: 173 VINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           +    DTSL+L    K +   V  D   Y  + D L      D  +SLF EM     K+ 
Sbjct: 203 ICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSS 262

Query: 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291
           +     YN +++ L KA K        K ++  +   +  ++NVL+ +F+ +G   +A E
Sbjct: 263 VV---TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +Y+ M     S +  TY  ++       RL  A  +   M      P    F SL+    
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
              R+D  MKV+  +   G   +A  Y  L++ + ++GK+  A  L+ EM   G  P+  
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            + ++++    +GKL+ A+ IF D++++        Y+ ++E     G+V+ A  L+ S+
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL 499

Query: 472 TSAGLRPGLSTYTALLTLLAK-----------RKL------------------------V 496
              G++P + TYT +++ L K           RK+                        +
Sbjct: 500 PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDL 559

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHA 533
             +AK++ EMK+ G+S D S+  +++  +  G +D +
Sbjct: 560 TASAKLIEEMKSCGFSADASSIKMVIDMLLSGELDKS 596



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 190/421 (45%), Gaps = 7/421 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
           D +++LF+   R S  +P    +   F  +  ++ F+ +L    ++      NGI+    
Sbjct: 70  DDAIALFQEMIR-SRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQL----ELNGIAHNIY 124

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             N +I    +  K   +Y    KV+    + DT ++N L+     +G   +A  + + M
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRM 184

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C  D  TY  ++  + +SG    A+ L ++M+ERN +     +++++DS+ + G +
Sbjct: 185 VENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCI 244

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ ++ EM+  G + S   Y SL+    KAGK +    L  +M      PN   F ++
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K GKL  A  ++ +M   G  P   TY+ L++ +    ++  A  + + M     
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P + T+T+L+      K VD   K+   +   G   + V+ S ++  + + G +  A  
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 424

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             + M S G+  +      L +    N   E A  + E   +S   + +V+YT+++  + 
Sbjct: 425 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 484

Query: 596 R 596
           +
Sbjct: 485 K 485



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 166/362 (45%), Gaps = 1/362 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + +N +I+ L    K+  +     +++++ C+ D  +YN ++      G    A ++   
Sbjct: 159 TTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRK 218

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+     D  TY  +I SL + G +DAAI LF+EM+ +  + S   + SLV  + KAG+
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +    +  +M      P+   +  L++ + K GKL  A  L+ EM   G  PN   +  
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++ +    +L  A ++   M R    P   T++ L++ +    +VD  MK++ +++  G
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHAL 534
           L     TY+ L+    +   + +A ++  EM + G   DV    +L+  + D G ++ AL
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                +  S +     +   + E   K    E A  L  +      K +++ YT +++ L
Sbjct: 459 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 518

Query: 595 VR 596
            +
Sbjct: 519 CK 520


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 8/282 (2%)

Query: 288  KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
            +A E +  M +     D   Y  +I    K G + AA K F EM  R+  P    + +++
Sbjct: 777  EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 836

Query: 348  DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
                + G +  + K++ EM   G  P +  +  LI  Y KAG +  A R+ + M  AG  
Sbjct: 837  SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 896

Query: 408  PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
            PN   +T +I+   K G LD A  +  +M + G  P   TY+ ++     SG ++ A+KL
Sbjct: 897  PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 956

Query: 468  YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIK 526
                 +AGL     TYT L+    K   +D A +IL EM   G    +   +VLM  +  
Sbjct: 957  VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 1016

Query: 527  DGSVDHALRWLRFMGSSGIRTN----NFIVRQLFESCMKNAL 564
             G ++   + L +M + GI  N    N +V+Q    C++N L
Sbjct: 1017 HGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY---CIRNNL 1055



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 3/329 (0%)

Query: 194  VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            +P    Y  L D   +  D       F EM    S++       Y  +I    +   +  
Sbjct: 791  LPDTVVYTTLIDGFCKRGDIRAASKFFYEM---HSRDITPDVLTYTAIISGFCQIGDMVE 847

Query: 254  SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
            +   F ++     + D+ ++  L+  +   G    AF ++  M +  CS +  TY  +I 
Sbjct: 848  AGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID 907

Query: 314  SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
             L K G LD+A +L  EM +   +P+   + S+V+ + K+G ++ ++K+  E +  G   
Sbjct: 908  GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA 967

Query: 374  SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
                Y +L+++Y K+G++D A  +  EM   G +P    F +++      G L+    + 
Sbjct: 968  DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 1027

Query: 434  TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
              M   G  P  +T++ L++ +     + +A  +Y  M S G+ P   TY  L+    K 
Sbjct: 1028 NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKA 1087

Query: 494  KLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            + +  A  +  EMK  G+SV VS   VL+
Sbjct: 1088 RNMKEAWFLFQEMKGKGFSVSVSTYSVLI 1116



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 130/285 (45%)

Query: 238  YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            Y  +I  L +  KL  +   F +++      DT  Y  L+  F  +G    A + +  M 
Sbjct: 762  YGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH 821

Query: 298  KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              + + D  TY  +I    + G +  A KLF EM  +   P    F  L++   KAG + 
Sbjct: 822  SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMK 881

Query: 358  TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             + +V+  M   G  P+   Y +LI+   K G LD+A  L  EM   G +PN   +  I+
Sbjct: 882  DAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIV 941

Query: 418  ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                KSG ++ A+ +  + E AG      TY+ L++ +  SG++D A ++   M   GL+
Sbjct: 942  NGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ 1001

Query: 478  PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            P + T+  L+       +++   K+L  M   G + + +  + L+
Sbjct: 1002 PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 1046



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 153/338 (45%), Gaps = 1/338 (0%)

Query: 236  SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
            ++YN VI ++ +  +++ ++     +       D  SY+ ++  +   G   K +++ E 
Sbjct: 690  ASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 749

Query: 296  MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
            M++     +   Y  +I  L +  +L  A + F EM  +   P   ++ +L+D   K G 
Sbjct: 750  MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 809

Query: 356  LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +  + K + EM      P    Y ++I  + + G +  A +L+ EM   G  P+   FT 
Sbjct: 810  IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 869

Query: 416  IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
            +I  + K+G +  A  +   M +AG  P   TY+ L++     G +DSA +L + M   G
Sbjct: 870  LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 929

Query: 476  LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
            L+P + TY +++  L K   ++ A K++ E +  G + D      LM  Y K G +D A 
Sbjct: 930  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 535  RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
              L+ M   G++        L      + + E  + LL
Sbjct: 990  EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 1027



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 123/278 (44%)

Query: 237  AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             +  +I    KA  ++ ++     ++ + C  +  +Y  L+     +G    A E+   M
Sbjct: 866  TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 925

Query: 297  EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
             K     +  TY  ++  L KSG ++ A+KL  E +          + +L+D+  K+G +
Sbjct: 926  WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEM 985

Query: 357  DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            D + ++  EM G G +P+   +  L+  +   G L+   +L + M   G  PN   F  +
Sbjct: 986  DKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSL 1045

Query: 417  IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
            ++ +     L  A +I+ DM   G  P   TY  L++ H  +  +  A  L+  M   G 
Sbjct: 1046 VKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGF 1105

Query: 477  RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
               +STY+ L+    KRK    A ++  +M+  G + D
Sbjct: 1106 SVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 1143



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/306 (18%), Positives = 127/306 (41%), Gaps = 2/306 (0%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK-AGRLDTSMKV 362
           D   +++    L   G L  A ++F++M       S +     +  + K   +  T++ V
Sbjct: 617 DPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIV 676

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           + E    G   +   Y  +I    + G++  A  L   M + G+ P+   ++ ++  + +
Sbjct: 677 FREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCR 736

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            G+LD    +   M+R G  P    Y  ++ +     ++  A + ++ M   G+ P    
Sbjct: 737 FGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVV 796

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMG 541
           YT L+    KR  +  A+K   EM +   + DV + + ++  + + G +  A +    M 
Sbjct: 797 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 856

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
             G+  ++    +L     K    + A  +    +++    ++V YT+++  L +  D  
Sbjct: 857 CKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD 916

Query: 602 NERHLM 607
           +   L+
Sbjct: 917 SANELL 922



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 42/275 (15%)

Query: 190  QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAK 247
            Q+   P    Y  L D L +  D D      +E++H+  K G+  ++F+ YN ++  L K
Sbjct: 892  QAGCSPNVVTYTTLIDGLCKEGDLDSA----NELLHEMWKIGLQPNIFT-YNSIVNGLCK 946

Query: 248  ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM----------- 296
            +  +E +     +   +    DT +Y  LM  +   G   KA EI + M           
Sbjct: 947  SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 1006

Query: 297  --------------EKGECSLD----------GSTYELMIPSLAKSGRLDAAIKLFQEMK 332
                          E GE  L+           +T+  ++        L AA  ++++M 
Sbjct: 1007 FNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMC 1066

Query: 333  ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
             R   P    + +LV    KA  +  +  ++ EM+G G   S   Y  LI+ + K  K  
Sbjct: 1067 SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 1126

Query: 393  TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             A  ++D+MR  G   +  +F    ++  K  + D
Sbjct: 1127 EAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPD 1161



 Score = 44.3 bits (103), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 3/202 (1%)

Query: 200  YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
            Y  L D   +S + D    +  EM+    +  I  F   N ++        LE       
Sbjct: 972  YTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTF---NVLMNGFCLHGMLEDGEKLLN 1028

Query: 260  KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
             +L      +  ++N L+  +  +     A  IY+ M       DG TYE ++    K+ 
Sbjct: 1029 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKAR 1088

Query: 320  RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
             +  A  LFQEMK + F  S + ++ L+    K  +   + +V+ +M+  G      ++ 
Sbjct: 1089 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 1148

Query: 380  SLIESYAKAGKLDTALRLWDEM 401
               ++  K  + DT +   DE+
Sbjct: 1149 FFSDTKYKGKRPDTIVDPIDEI 1170


>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
 gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 711

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 124/532 (23%), Positives = 229/532 (43%), Gaps = 34/532 (6%)

Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
           +  E  +F   LSL DE+ H  +++   L      V+  L +  K    +   K    S 
Sbjct: 133 IFTEKSEF---LSLLDEIPHPPNRDNALL------VLNSLREWQKTHTFFNWVKS--KSL 181

Query: 266 CKIDTQSYNVLMTLFLNKGLPY-KAFEIYESME----KGECSLDGSTYELMIPSLAKSGR 320
             ++T  YNV M     K L + + F++ E M     K    LD  TY  +I    +   
Sbjct: 182 FPMETIFYNVTM-----KSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNL 236

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
            + AI+ F+ M +    P    +++++D   K+G+++  + +Y      G +P A  +  
Sbjct: 237 YNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSV 296

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L + + +AG  D    +  EM+    +PN  ++  ++E+  ++GK  +A S+F +M  AG
Sbjct: 297 LGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAG 356

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   T + L++++  +     A++L+  M +         Y  LL + A   L + A 
Sbjct: 357 LTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAE 416

Query: 501 KILLEMK--TMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
           ++  +MK        + S + +L +Y   G  + A+     M  +G++ N      L + 
Sbjct: 417 RLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQC 476

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAH 618
             K    +    + +  ++   K D  L   +L+ +  C+  ++   +MA L     K  
Sbjct: 477 LGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANKKLV 536

Query: 619 AFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCV 678
            F+  +     + +      V+E F  +    +  A R F N L++      +  RA  +
Sbjct: 537 TFVNLIVDEKTEYET-----VKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHEL 591

Query: 679 WKVAYENKLFPKAIVFDQHI-AWSLDVRNLSVGAALIAV---MHTLHRFRKR 726
             +     L+P   + ++ I  WSLDVR+LSVGAA  A+   M TL    KR
Sbjct: 592 LYLGTLFGLYPG--LHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKR 641



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 163/345 (47%), Gaps = 6/345 (1%)

Query: 155 LDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFD 214
           LD++   P   +    L  + +   + + F W K +S + P +    + ++V  +S  F 
Sbjct: 144 LDEIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLF-PME---TIFYNVTMKSLRFG 199

Query: 215 GMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
               L +EM  +  K+G+ L +  Y+ +I    + +    +   F+++  +    D  +Y
Sbjct: 200 RQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTY 259

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + ++ ++   G   +   +YE         D   + ++     ++G  D    + QEMK 
Sbjct: 260 SAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKS 319

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
            + +P+  ++ +L+++MG+AG+   +  ++ EM   G  P+     +L++ Y KA     
Sbjct: 320 MDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARD 379

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM-ERAGFLPTPSTYSCLL 452
           AL+LW+EM+   +  +F L+  ++   A  G  + A  +F DM E     P   +Y+ +L
Sbjct: 380 ALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAML 439

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
            ++ S G+ + AM+L+  M  AG++  +   T L+  L K K +D
Sbjct: 440 NIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRID 484


>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 484

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 195/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E    +GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYNLLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 174/388 (44%), Gaps = 6/388 (1%)

Query: 186 WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV-HDSSKNGISLFSAYNRVIQY 244
           W   +   +P  +   M+ D L +   FD M  ++ +MV   +S N ++    Y  +I  
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVT----YGTLIDG 202

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
             +      ++  F ++++         Y +L+     +    +A  ++ +M       +
Sbjct: 203 CCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPN 262

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  M+    K   +  A++L+QEM      P+   F  L+D + K   + ++ K  +
Sbjct: 263 LYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLI 322

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           +M   G  P+  +Y  LI+ Y KAG L  AL L  E+      P+   ++++I+      
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           +++ A  +  +M++ GFLP   TY+ L++ +   G ++ A+++ + MT  G+ P + T++
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS 543
            L+    K   ++ A  +  EM   G   DV A   L+  + KDG+   A R  + M  +
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPL 571
           G+  N F +  L +   K+     A  L
Sbjct: 503 GLHPNVFTLSCLIDGLCKDGRISDAIKL 530



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 142/302 (47%), Gaps = 22/302 (7%)

Query: 182 SLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241
           S+FR   R S  +P    Y  + D   +       L L+ EM+ D     +  F     +
Sbjct: 249 SMFR-TMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGI---L 304

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQS---------YNVLMTLFLNKGLPYKAFEI 292
           I  L K D++  +    +K L     ID  S         YN L+  +   G   +A  +
Sbjct: 305 IDGLCKTDEMVSA----RKFL-----IDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  +EK E   D  TY ++I  L    R++ A  L QEMK++ F P+   + +L+D   K
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G ++ +++V  +M   G  P+   + +LI+ Y KAGK++ A+ L+ EM I G  P+   
Sbjct: 416 EGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVA 475

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +T +I+ H K G    A  +  +M+ AG  P   T SCL++     G++  A+KL+ + T
Sbjct: 476 YTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKT 535

Query: 473 SA 474
             
Sbjct: 536 GT 537



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 1/322 (0%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           Q+ N+++   + KG     +++Y  M     S +  TY  +I    + G    A +LF E
Sbjct: 159 QACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDE 218

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M E+   P+  I+  L+  +    R+  +  ++  M+  G  P+   Y ++++ Y K   
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH 278

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +  AL L+ EM   G  PN   F ++I+   K+ ++  A     DM   G +P    Y+C
Sbjct: 279 VKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNC 338

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L++ +  +G +  A+ L++ +    + P + TY+ L+  L     ++ A  +L EMK  G
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 511 YSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
           +  +    + L+  Y K+G+++ A+     M   GI  N      L +   K    E+A 
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 570 PLLETYVESAAKVDLVLYTSVL 591
            L    V      D+V YT+++
Sbjct: 459 GLYTEMVIKGLLPDVVAYTALI 480



 Score = 39.7 bits (91), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 10/178 (5%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I +   + R + A++LF++M+  + +P        + +    G LD    ++  ++  G
Sbjct: 703 VISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRG 762

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
                 +  SLI  Y+K G++ TA       R +   PN   F  ++ + + +G ++   
Sbjct: 763 LDTDLCLNNSLINMYSKCGEIGTA------RRFSLVLPNDVTFMGVLMACSHAGLVEEGK 816

Query: 431 SIFTDM-ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             F  M E     P  S + C++++   +G +  A   Y  +    +RP    +  LL
Sbjct: 817 QHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEA---YEFILKMPVRPNAVVWRTLL 871


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 184/423 (43%), Gaps = 50/423 (11%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDS-DTSLSLFRWAKRQSWYVPGDECYVMLFDVL 207
           P+LE  L +     +     + L    D+ +     F WA +Q  Y    E Y  +  +L
Sbjct: 73  PKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKIL 132

Query: 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK 267
            + R F  + +L +EM  ++ +      S Y                             
Sbjct: 133 GKMRQFGAVWALIEEMRRENPQ----FVSPY----------------------------- 159

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
                + VLM  F +  +  KA E+ + M K  C  D   +  ++ +L K+G +  A  L
Sbjct: 160 ----VFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASL 215

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F++M+ R F P+   F SL+    + G+L  +  V ++++  G  P   +Y +L+  YA 
Sbjct: 216 FEDMRIR-FTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAA 274

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           AGK+  A  L  EMR     PN   FT +I++     K++ AM +F +M+  G      T
Sbjct: 275 AGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVT 334

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+      G++    +L ++M   G  P   TY  ++    K++ ++   +++ EM+
Sbjct: 335 YTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMR 394

Query: 508 TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT--NNFIV--------RQLF 556
            +G + D++  ++++ +  K G +   +R    M ++G+    + F++        R L 
Sbjct: 395 KIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLV 454

Query: 557 ESC 559
           E+C
Sbjct: 455 EAC 457



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 158/357 (44%), Gaps = 13/357 (3%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEM---VHDSSKNGISLFSAYNRVIQYLAKADKL 251
           P +  +  L D L ++       SLF++M      + K+  SL   + R      +   +
Sbjct: 191 PDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCR------EGKLM 244

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E  Y    ++ ++  + D   YN L+T +   G    A+++ + M + EC  +  ++  +
Sbjct: 245 EAKYV-LVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTL 303

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I +L    +++ A+++F EM+          + +L+    K G++    ++   M   GH
Sbjct: 304 IQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGH 363

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+   Y+ ++ ++ K  +L+  + L +EMR  G  P+  ++ ++I    K G++   + 
Sbjct: 364 IPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVR 423

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL--RPGLSTYTALLTL 489
           ++ +ME  G  P   T+  ++    S   +  A + +  M   GL   P   T   LL  
Sbjct: 424 VWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNS 483

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDV-LMVYIKDGSVDHALRWLRFMGSSGI 545
           L + + ++++  +   + T G  ++V A  + +     +G V  A  +   M  +G+
Sbjct: 484 LLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGV 540


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 186/414 (44%), Gaps = 10/414 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEM 253
           P    Y ++ D L  +    G +   DE+ H   + G S  + AYN +I  L K + +E 
Sbjct: 43  PDVATYTIIVDRLCRA----GKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIER 98

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +Y   +++     + D  +YN +++     G   +A + ++SM     S D   Y  ++ 
Sbjct: 99  AYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLD 158

Query: 314 SLAKSGRLDAAIKLFQ--EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           +L K G++  A  LF+  +M +R   P    + +L+D   +  + D +MK++ ++   G+
Sbjct: 159 ALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGY 218

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P    Y S++   A+   +D A  ++ +M  +G  PN   +++++  H + G +   + 
Sbjct: 219 MPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLE 278

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           ++ +M    F P     + +++M   + +VD A K+   M+  G  P + TY  LL  L 
Sbjct: 279 LYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLC 338

Query: 492 KRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           K  LVD A ++   M   G + D VS S VL    K   V  A      M    +  +  
Sbjct: 339 KTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVV 398

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
               L +   K    + AK LL+   E     D V  T+++  L  C+D++ + 
Sbjct: 399 TFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGL--CRDKRTDE 450



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 189/442 (42%), Gaps = 15/442 (3%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y P    Y  L D L +         LF  M     K    L + YN +I    + +K +
Sbjct: 146 YSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLIT-YNTLIDGFCRVEKTD 204

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   FK V+      DT +YN ++     K    +A E+++ M    C+ +G+TY +++
Sbjct: 205 EAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVL 264

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
               + G +   ++L++EM E+ F P   +  +++D + KA ++D + KV  EM   G  
Sbjct: 265 SGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAV 324

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y  L++   K   +D A  L+  M   G  P+   +++++    K+ K+  A  +
Sbjct: 325 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVL 384

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  M     +P   T++ L++    +G++D A  L + M+   + P   T T L+  L +
Sbjct: 385 FDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCR 444

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFI 551
            K  D A ++   M   G   DV   ++++  + ++G +  AL + + M  S      F 
Sbjct: 445 DKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKS---DGEFS 501

Query: 552 VRQLFESCMKNALYESAK-----PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
              +  + + NAL E+ +        +    S    D V Y +++  L      +  RH+
Sbjct: 502 PDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGL-----RKQGRHI 556

Query: 607 MAILSATKHKAHAFLCGLFTGP 628
            A       K   FL   F  P
Sbjct: 557 QADRLTQAMKEKGFLSDCFKAP 578



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 166/372 (44%), Gaps = 3/372 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  L K  K+  +    +++ +     D  +Y +++      G   +A E++  M 
Sbjct: 13  YSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMI 72

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  CS +   Y  +I  L K   ++ A KL +EM  + + P    + +++  + + G++ 
Sbjct: 73  ERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVS 132

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR--PNFGLFTM 415
            + + +  M   G+ P    Y  L+++  K GK+  A  L+  M +A  +  P+   +  
Sbjct: 133 EAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNT 192

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+   +  K D AM +F D+   G++P   TY+ +L   A    +D A +++  M  +G
Sbjct: 193 LIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSG 252

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD-VLMVYIKDGSVDHAL 534
             P  +TY+ +L+   +   +    ++  EM    +S DV   + V+ +  K   VD A 
Sbjct: 253 CAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAH 312

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           + L  M   G   +      L +   K  L + A  L  T V++    D+V Y+ VL  L
Sbjct: 313 KVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL 372

Query: 595 VRCQDEQNERHL 606
            +     + R L
Sbjct: 373 CKTNKVHDARVL 384



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 173/402 (43%), Gaps = 19/402 (4%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY  +I  L K+G++  A+++ +EM E+   P    +  +VD + +AG++D + +++
Sbjct: 9   DVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELF 68

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +M   G   +   Y +LI    K   ++ A +L +EM   G+ P+   +  I+    + 
Sbjct: 69  HKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRM 128

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR--PGLS 481
           GK+  A   F  M   G+ P    Y+ LL+     G+V  A  L+ +M  A  +  P L 
Sbjct: 129 GKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLI 188

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFM 540
           TY  L+    + +  D A K+  ++   GY  D V+ + +L+   +  ++D A    + M
Sbjct: 189 TYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 248

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDE 600
             SG   N      +     +         L E   E     D++L  +V+  L + +  
Sbjct: 249 VDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKV 308

Query: 601 QNERHLMAILSATKH-----KAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAA 655
            +   ++  +S           +  L GL       K  ++    E F  +   ++ G A
Sbjct: 309 DDAHKVLEEMSKIGAVPDVVTYNILLDGLC------KTNLVDKAHELFSTM---VDNGCA 359

Query: 656 RYFV--NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFD 695
              V  +V+LN L    +++ AR ++    E KL P  + F+
Sbjct: 360 PDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFN 401


>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 484

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 194/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEXIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEXMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E     GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 127/260 (48%)

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +L   C     ++N+L+     +GL  +A +I E M    C+ +  +Y  ++    K  +
Sbjct: 178 MLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKK 237

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +D AI+    M  R   P    + +L+ ++ K G++D ++++  ++   G  P    Y +
Sbjct: 238 MDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNT 297

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           +I+  +K GK + A++L DEMR  G +P+   ++ ++   ++ GK+D A+  F D+E  G
Sbjct: 298 VIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLG 357

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   TY+ ++     S Q D A+     M S   +P  +TYT L+  +A   L   A 
Sbjct: 358 IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEAL 417

Query: 501 KILLEMKTMGYSVDVSASDV 520
            +L E+ + G     SA  V
Sbjct: 418 DLLNELCSRGLVKKSSAEQV 437



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 158/339 (46%), Gaps = 1/339 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
            S ++  +Q   K   +  +     ++ +   K D  +YNVL+     +G   +A +   
Sbjct: 82  LSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLN 141

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           +M    C  +  T+ +++ S+  +GR   A KL  +M  +   PS   F  L++ + + G
Sbjct: 142 NMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQG 201

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            L  ++ +  +M   G  P++  Y  L+  + K  K+D A+   D M   G  P+   + 
Sbjct: 202 LLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYN 261

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            ++ +  K GK+D+A+ I   +   G  P   TY+ +++  +  G+ + A+KL + M   
Sbjct: 262 TLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK 321

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHA 533
           GL+P + TY++L++ L++   VD A K   +++ +G   + ++ + +++   K    D A
Sbjct: 322 GLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRA 381

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           + +L +M S   +        L E      L + A  LL
Sbjct: 382 IDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLL 420



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 125/257 (48%), Gaps = 1/257 (0%)

Query: 221 DEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           ++++ D  + G S     +N +I +L +   L  +    +K+    C  ++ SYN L+  
Sbjct: 172 EKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 231

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           F  +    +A E  + M    C  D  TY  ++ +L K G++D A+++  ++  +   P 
Sbjct: 232 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 291

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              + +++D + K G+ + ++K+  EM+  G +P    Y SL+   ++ GK+D A++ + 
Sbjct: 292 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFH 351

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           ++   G RPN   +  I+    KS + D A+     M      PT +TY+ L+E  A  G
Sbjct: 352 DLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG 411

Query: 460 QVDSAMKLYNSMTSAGL 476
               A+ L N + S GL
Sbjct: 412 LAKEALDLLNELCSRGL 428



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 120/269 (44%), Gaps = 3/269 (1%)

Query: 331 MKERNFRPSFNI--FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           + ++   P F++  F+  V +  K   +  +MK+  EM+  G +P    Y  LI    K 
Sbjct: 71  INQQTLFPCFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 130

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+LD A++  + M   G +PN     +I+ S   +G+   A  + +DM R G  P+  T+
Sbjct: 131 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 190

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+      G +  A+ +   M   G  P   +Y  LL    K K +D A + L  M +
Sbjct: 191 NILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVS 250

Query: 509 MGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D+   + L+  + KDG VD A+  L  + S G          + +   K    E 
Sbjct: 251 RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTER 310

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           A  LL+       K D++ Y+S+++ L R
Sbjct: 311 AIKLLDEMRRKGLKPDIITYSSLVSGLSR 339



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 4/223 (1%)

Query: 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
           +H  + N +S    YN ++    K  K++ +      ++   C  D  +YN L+T     
Sbjct: 215 MHGCTPNSLS----YNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKD 270

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
           G    A EI   +    CS    TY  +I  L+K G+ + AIKL  EM+ +  +P    +
Sbjct: 271 GKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITY 330

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
           +SLV  + + G++D ++K + +++G G RP+A  Y S++    K+ + D A+     M  
Sbjct: 331 SSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMIS 390

Query: 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
              +P    +T++IE  A  G    A+ +  ++   G +   S
Sbjct: 391 KRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSS 433


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 180/399 (45%), Gaps = 4/399 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           +D ++SL  +M        I   S       +L + D   +++    K++    +    +
Sbjct: 114 YDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVD---LAFSVLAKIIKLGLQPTIVT 170

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +  L+      G   +A E+++ M    C  D  TY  +I  L K G   AA  L ++M+
Sbjct: 171 FTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKME 230

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           E   +P+   +++++DS  K  R++ ++ ++  M+  G  P    Y SLI+      +  
Sbjct: 231 EAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWK 290

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A  L +EMR     P+   F +++++  K GK+  A  +   M   G  P   TYS L+
Sbjct: 291 EASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLM 350

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             ++   +V  A KL+++M + G +P + +Y  L+    K K +D A ++  EM   G +
Sbjct: 351 YGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLT 410

Query: 513 V-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
             +VS + ++    + GS+  A    + M ++G   N F    L +   K   +  A  L
Sbjct: 411 PNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRL 470

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
                 + +K +LV+Y  ++  + +  + ++ R L + L
Sbjct: 471 FRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSEL 509



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 140/301 (46%), Gaps = 3/301 (0%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +L +EM    S N +     +N ++  + K  K+  +    K + +   + D  +Y+ LM
Sbjct: 294 ALLNEM---RSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLM 350

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             +  +    +A +++++M    C  D  +Y ++I    K  R+D A +LF EM  +   
Sbjct: 351 YGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLT 410

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P+   + +L+  + + G L  +  ++  M   G+ P+   Y  L++ + K G    A RL
Sbjct: 411 PNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRL 470

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +  M+    +PN  ++ ++I++  KSG L  A  +F+++   G  P    Y+ ++     
Sbjct: 471 FRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCK 530

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G +D A++ + +M   G  P   +Y  ++      K    A +++ EM+  G+  DV  
Sbjct: 531 EGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590

Query: 518 S 518
           +
Sbjct: 591 T 591



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 143/330 (43%), Gaps = 7/330 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADKLE 252
           P    Y  + D   + R  +  L +F  M       GIS  +F+ YN +IQ L    + +
Sbjct: 236 PNVVTYSTIIDSHRKDRRVNEALDIFSYM----KVKGISPDIFT-YNSLIQGLCNFSQWK 290

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +     ++   +   D  ++NVL+     +G   +A  + ++M +     D  TY  ++
Sbjct: 291 EASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLM 350

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
              +    +  A KLF  M  +  +P    +  L++   K  R+D + +++ EM   G  
Sbjct: 351 YGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLT 410

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y +LI    + G L  A  L+  M   G  PN   ++++++   K G    A  +
Sbjct: 411 PNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRL 470

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  M+     P    Y+ L++    SG +  A KL++ +   GL+P    YT ++  L K
Sbjct: 471 FRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCK 530

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             L+D A +    M+  G   D  + +V++
Sbjct: 531 EGLLDEALEAFRNMEEDGCPPDEISYNVII 560



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 5/213 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L +   + +  D    LF+EM+H   + N +S    YN +I  L +   L  +   F
Sbjct: 381 YNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVS----YNTLIHGLCQLGSLREARNLF 436

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           K +  +    +  +Y++L+  F  +G   KAF ++ +M+      +   Y ++I ++ KS
Sbjct: 437 KNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKS 496

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G L  A KLF E+  +  +P+  I+ ++++ + K G LD +++ +  M+  G  P    Y
Sbjct: 497 GNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISY 556

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
             +I  +        A++L  EMR  GF  + G
Sbjct: 557 NVIIRGFLHHKDESRAVQLIGEMRDKGFIADVG 589


>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
           CCMP2712]
          Length = 363

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 143/318 (44%), Gaps = 10/318 (3%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF---------QEMKERNFRPS 339
           A E+ +S+EK   +    +Y   + +L ++GR   A+ +F          ++  R+ RP 
Sbjct: 3   ALEVLKSIEKEGLTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLRPD 62

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              F++ + +  K G    +M +Y EM+  G  P+   + +LI +  K G++  A  +++
Sbjct: 63  TVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFE 122

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
            M+  G   N   FT  I S  K G    A+ +  +M   G  P    YS  +     + 
Sbjct: 123 RMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAA 182

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-S 518
           +   A+ L   MT+  ++P +  Y+A++    K  L + AA+I  +MK  G + DV A S
Sbjct: 183 EARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYS 242

Query: 519 DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
            ++  Y + G    AL   + M  +G+R N     +   +C K   +  +  LLE     
Sbjct: 243 TLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERMKAD 302

Query: 579 AAKVDLVLYTSVLAHLVR 596
             + D V Y  V++ L R
Sbjct: 303 KLRPDAVAYNFVISALSR 320



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 138/310 (44%), Gaps = 1/310 (0%)

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           KV     + DT +++  ++     G   +A  +Y  ME      +  T+  +I +  K G
Sbjct: 53  KVAARSLRPDTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGG 112

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           ++  A ++F+ M+ R    +   F + + S  K G    ++K+  EM   G +P+   Y 
Sbjct: 113 QVSKAFEVFERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYS 172

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           + I +  KA +   AL L + M     +P+  +++ ++ +  K+G  + A  IF  M+R 
Sbjct: 173 AAISACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKRE 232

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P    YS L++ +  +G+   A++++  M  AG+RP +  YT  +   AK      +
Sbjct: 233 GLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRS 292

Query: 500 AKILLEMKTMGYSVDVSASD-VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +L  MK      D  A + V+    + G  D  L  L+ +     + N      + ++
Sbjct: 293 LGLLERMKADKLRPDAVAYNFVISALSRGGQWDAGLTLLQMLEEDEAQPNISTYCTVIKA 352

Query: 559 CMKNALYESA 568
           C  N  +E A
Sbjct: 353 CGDNGQWEKA 362



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/271 (19%), Positives = 116/271 (42%), Gaps = 3/271 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P +  +  L     +         +F+ M        +  F+A    I    K    + +
Sbjct: 96  PNEFTFAALITACEKGGQVSKAFEVFERMQARGIVGNVYTFTA---AISSCEKLGDWQRA 152

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               ++++    + + Q+Y+  ++          A  + E M   +   D   Y  ++ +
Sbjct: 153 LKLLEEMIAKGIQPNLQAYSAAISACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAA 212

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K+G  + A ++FQ+MK     P    +++L+ +  +AG    +++V+  M+  G RP+
Sbjct: 213 CGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPN 272

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y   I + AKAG+   +L L + M+    RP+   +  +I + ++ G+ D  +++  
Sbjct: 273 VIAYTEAIAACAKAGEWRRSLGLLERMKADKLRPDAVAYNFVISALSRGGQWDAGLTLLQ 332

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +E     P  STY  +++    +GQ + A+
Sbjct: 333 MLEEDEAQPNISTYCTVIKACGDNGQWEKAL 363


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 175/395 (44%), Gaps = 38/395 (9%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           D  L +F +M+    K    L   Y  VI +L K +KL+++   F++++ S C  D  +Y
Sbjct: 104 DKALQIFHQMIDMKVKPDAFL---YTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTY 160

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
            VL+          +  +I+E M     S +  TY  ++    K+GR+D A+ L + +K 
Sbjct: 161 TVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKG 220

Query: 334 RNFRPSFNIFASLVD---------------------------------SMGKAGRLDTSM 360
               PS +++++L+D                                  + KAG+LD + 
Sbjct: 221 TGRSPSGSLYSTLIDGLCKHDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAK 280

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            V+++M   G  P    Y  +I S  K  ++  A  L D+       P   + T++++  
Sbjct: 281 AVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGL 340

Query: 421 AKSGKLDIAMSIFTDM-ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
            KS +++ A  I   M E     P+  TYS +++    + ++D A  +   M  AG  P 
Sbjct: 341 CKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPD 400

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLR 538
           + TYTA++    K   +D A ++   M   G ++DV A ++L+  Y +   VD A+  + 
Sbjct: 401 VVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIE 460

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            M   GI+ N   +  + +   K +  E A+ L+E
Sbjct: 461 EMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLME 495



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 157/366 (42%), Gaps = 39/366 (10%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           IN  D + S F     QS  +P    Y +L   L ++  ++    +F+EM+   SK    
Sbjct: 135 INKLDLAASYFERMV-QSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEML---SKGHSP 190

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKV---------------LDSDCKIDTQS------ 272
               Y  V+    KA +++ +    +++               +D  CK D         
Sbjct: 191 ELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELF 250

Query: 273 ------------YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
                       Y   ++     G   +A  ++  M +  C+ D  +Y ++I SL K  R
Sbjct: 251 EMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNR 310

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR-PSAPMYV 379
           +  A +L  +  ER   P   +   LVD + K+ R++ +  +   M   G R PS   Y 
Sbjct: 311 VSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYS 370

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           ++I+   KA +LD A  +  +MR AG  P+   +T II++  K G+LD A  +F  M   
Sbjct: 371 AVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHER 430

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G       Y+ L+  +  + +VD A+ +   M   G++P + + + ++  L K   V+  
Sbjct: 431 GCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVE-E 489

Query: 500 AKILLE 505
           A++L+E
Sbjct: 490 ARLLME 495



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 149/332 (44%), Gaps = 10/332 (3%)

Query: 144 RWKWGPELETQLDKLQFVPKMVHITQALKVINDS---DTSLSLFRWAKRQSWYVPGDECY 200
           +W+ G ++  ++      P++V     +     +   D +LSL R  K  +   P    Y
Sbjct: 172 KWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLK-GTGRSPSGSLY 230

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
             L D L +    D    LF EM     ++ I     Y   I  L KA KL+ +     K
Sbjct: 231 STLIDGLCKHDRHDEARELF-EMAAGDVQDVI----VYTSFISGLCKAGKLDEAKAVHVK 285

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           ++++ C  D  SYNV++          +A E+ +   + +C        +++  L KS R
Sbjct: 286 MIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRR 345

Query: 321 LDAAIKLFQEMKERNFR-PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           ++ A  + + M E   R PS   +++++D + KA RLD +  V  +M+  G  P    Y 
Sbjct: 346 VEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYT 405

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           ++I+++ K G+LD A  L+  M   G   +   + ++I  + ++ K+D A+++  +M   
Sbjct: 406 AIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGR 465

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           G  P   + S +++      +V+ A  L   M
Sbjct: 466 GIQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 136/309 (44%), Gaps = 1/309 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +T + N L+ +F+N G   +A+ +++         D  TY  +I    K+ ++  A+ L 
Sbjct: 16  NTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLL 75

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EMK     P+   F SL+  + +    D +++++ +M     +P A +Y  +I    K 
Sbjct: 76  GEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKI 135

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            KLD A   ++ M  +G  P+   +T+++ S  K+ K +    IF +M   G  P   TY
Sbjct: 136 NKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTY 195

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + ++  +  +G++D A+ L   +   G  P  S Y+ L+  L K    D  A+ L EM  
Sbjct: 196 ATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHD-EARELFEMAA 254

Query: 509 MGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
                 +  +  +    K G +D A      M  +G   +      +  S  K+     A
Sbjct: 255 GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEA 314

Query: 569 KPLLETYVE 577
           K L++  +E
Sbjct: 315 KELMDQAME 323



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 2/195 (1%)

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           W + R  GF+ N      ++E     G    A  +F D     F P   TY  L+     
Sbjct: 6   WAKAR-PGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCK 64

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           + Q+  A+ L   M +AG+ P + T+ +L+  L +    D A +I  +M  M    D   
Sbjct: 65  AEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFL 124

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
             V++ ++ K   +D A  +   M  SG   +      L  S  K   +E    + E  +
Sbjct: 125 YTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEML 184

Query: 577 ESAAKVDLVLYTSVL 591
                 +LV Y +V+
Sbjct: 185 SKGHSPELVTYATVV 199


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 184/423 (43%), Gaps = 50/423 (11%)

Query: 149 PELETQLDKLQFVPKMVHITQALKVINDS-DTSLSLFRWAKRQSWYVPGDECYVMLFDVL 207
           P+LE  L +     +     + L    D+ +     F WA +Q  Y    E Y  +  +L
Sbjct: 106 PKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKIL 165

Query: 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK 267
            + R F  + +L +EM  ++ +      S Y                             
Sbjct: 166 GKMRQFGAVWALIEEMRRENPQ----FVSPY----------------------------- 192

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
                + VLM  F +  +  KA E+ + M K  C  D   +  ++ +L K+G +  A  L
Sbjct: 193 ----VFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASL 248

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
           F++M+ R F P+   F SL+    + G+L  +  V ++++  G  P   +Y +L+  YA 
Sbjct: 249 FEDMRIR-FTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAA 307

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           AGK+  A  L  EMR     PN   FT +I++     K++ AM +F +M+  G      T
Sbjct: 308 AGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVT 367

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+      G++    +L ++M   G  P   TY  ++    K++ ++   +++ EM+
Sbjct: 368 YTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMR 427

Query: 508 TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT--NNFIV--------RQLF 556
            +G + D++  ++++ +  K G +   +R    M ++G+    + F++        R L 
Sbjct: 428 KIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLV 487

Query: 557 ESC 559
           E+C
Sbjct: 488 EAC 490



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 158/357 (44%), Gaps = 13/357 (3%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEM---VHDSSKNGISLFSAYNRVIQYLAKADKL 251
           P +  +  L D L ++       SLF++M      + K+  SL   + R      +   +
Sbjct: 224 PDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCR------EGKLM 277

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           E  Y    ++ ++  + D   YN L+T +   G    A+++ + M + EC  +  ++  +
Sbjct: 278 EAKYV-LVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTL 336

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I +L    +++ A+++F EM+          + +L+    K G++    ++   M   GH
Sbjct: 337 IQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGH 396

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+   Y+ ++ ++ K  +L+  + L +EMR  G  P+  ++ ++I    K G++   + 
Sbjct: 397 IPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVR 456

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL--RPGLSTYTALLTL 489
           ++ +ME  G  P   T+  ++    S   +  A + +  M   GL   P   T   LL  
Sbjct: 457 VWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNS 516

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDV-LMVYIKDGSVDHALRWLRFMGSSGI 545
           L + + ++++  +   + T G  ++V A  + +     +G V  A  +   M  +G+
Sbjct: 517 LLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGV 573


>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 484

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 194/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKZGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E     GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSSLFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 161/360 (44%), Gaps = 5/360 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N +I    +  +L+++   F K+       D  SY  L+  F   G   +A E++  +E
Sbjct: 167 FNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELE 226

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D  T+  ++  L  + R +  + + Q+MKE  +RP+   +A+LVD   +  + +
Sbjct: 227 QP----DMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAE 282

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + K+  EM   G  P A    +++ +Y + G++  A+R+++ M++ G  PN   +  ++
Sbjct: 283 EAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMV 342

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +     GK+  AM++   M   G  P   TY+ L+      G ++SA +L   M   GL 
Sbjct: 343 QGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLA 402

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
               TY  L+  L K   VD A  +   ++  G   + V+ + V+    K G  D A  +
Sbjct: 403 ADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTF 462

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M S+G   + +      E+  K          ++  ++   K   V YT V+  L +
Sbjct: 463 LEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFK 522



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 153/369 (41%), Gaps = 9/369 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L LFR  ++   Y      +  L   L ++R  +  L +  +M     +       A
Sbjct: 216 DEALELFRELEQPDMYT-----HAALVKGLCDARRGEEGLYMLQKMKELGWRPATR---A 267

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  ++    +  K E +     ++ D+       +   ++  +  +G    A  ++ESM+
Sbjct: 268 YAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMK 327

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  +  TY  M+      G++  A+ L  +M+E    P    +  L+      G ++
Sbjct: 328 LKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIE 387

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           ++ ++   M+G G       Y  LI++  K GK+D A  L+D +   G RPN   F  +I
Sbjct: 388 SAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVI 447

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               K GK D+A +    M  AG  P   TYS  +E    +      +   + M    ++
Sbjct: 448 NGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVK 507

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRW 536
           P    YT ++  L K +   +A +I  +M ++G S D V+ +  +  Y  +G +  A   
Sbjct: 508 PSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENV 567

Query: 537 LRFMGSSGI 545
           +  M   GI
Sbjct: 568 VMEMKKGGI 576



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 148/359 (41%), Gaps = 33/359 (9%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           +++  L+T F    L      ++  M   G  +  G+TY  +I +L +   L  A +   
Sbjct: 94  RTFRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLS 153

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
            M    +RP    F SL+    +  +LD +  ++ +M   G    A  Y +LIE + + G
Sbjct: 154 LMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETG 213

Query: 390 KLDTALRLWDE-------------------------------MRIAGFRPNFGLFTMIIE 418
           ++D AL L+ E                               M+  G+RP    +  +++
Sbjct: 214 RVDEALELFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVD 273

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
              +  K + A  +  +M   G +P   T + ++  +   G++  A++++ SM   G  P
Sbjct: 274 LWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEP 333

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWL 537
            + TY A++        V  A  +L +M+  G   DV   ++L+     DG ++ A R L
Sbjct: 334 NVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLL 393

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           R M  +G+  + +    L ++  K    + A  L +       + + V + +V+  L +
Sbjct: 394 RLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCK 452



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 104/246 (42%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I+       +E ++   + +  +    D  +YNVL+      G   +A  +++ +E
Sbjct: 373 YNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLE 432

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 +  T+  +I  L K G+ D A    ++M      P    ++  ++++ K     
Sbjct: 433 YRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSR 492

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             +    EM     +PS   Y  +I+   K      A R+W +M   G  P+   +T  +
Sbjct: 493 EGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSV 552

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            ++   G+L  A ++  +M++ G +     Y+ L++ H S G+ D A+ +   MT     
Sbjct: 553 RAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASM 612

Query: 478 PGLSTY 483
           P   T+
Sbjct: 613 PNHFTF 618



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 118/289 (40%), Gaps = 40/289 (13%)

Query: 336 FRPSFN-IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM---YVSLIESYAKAGKL 391
            RP F+  F SL+    +       ++++  M    H P AP    Y +LI +  +   L
Sbjct: 88  LRPLFDRTFRSLLTHFSRYALTPLMLRLFAHMYH--HGPPAPTGATYNALIRALCRRADL 145

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A R    M  +G+RP+   F  +I  + ++ +LD+A  +F  M   GF     +Y+ L
Sbjct: 146 RHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAAL 205

Query: 452 LEMHASSGQVDSAMKLY-------------------------------NSMTSAGLRPGL 480
           +E    +G+VD A++L+                                 M   G RP  
Sbjct: 206 IEGFCETGRVDEALELFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPAT 265

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHALRWLRF 539
             Y AL+ L  + +  + A K+L EM   G     V+ + V+  Y ++G +  A+R    
Sbjct: 266 RAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFES 325

Query: 540 MGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLY 587
           M   G   N +    + +  C    +Y+ A  LL+   E   + D+V Y
Sbjct: 326 MKLKGCEPNVWTYNAMVQGFCNVGKVYK-AMALLDQMRECGVEPDVVTY 373



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/367 (20%), Positives = 130/367 (35%), Gaps = 56/367 (15%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L D L ++   D   SLFD + +   + N ++    +N VI  L K  K +++    
Sbjct: 408 YNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVT----FNTVINGLCKGGKFDVACTFL 463

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +K++ + C  DT +Y+  +          +     + M + +       Y ++I  L K 
Sbjct: 464 EKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKE 523

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
                A +++ +M      P    + + V +    GRL  +  V MEM+  G    A  Y
Sbjct: 524 RNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAY 583

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPN----------------------------- 409
            +LI+ +   GK D A+ +   M      PN                             
Sbjct: 584 NTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWK 643

Query: 410 -------FGLFTM---------------IIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
                  F LF +               I+E  ++  +LD   S+ + M+          
Sbjct: 644 TIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDI 703

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L+           A  L  SM   G  P L +Y  LL+        D A +I   ++
Sbjct: 704 YTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLR 763

Query: 508 TMGYSVD 514
              Y+ D
Sbjct: 764 WKEYNTD 770



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 73/164 (44%)

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
           FE++E M+K         Y  ++   ++  RLD    L   MKE +   + +I+ SLV+ 
Sbjct: 651 FELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNC 710

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
             K      +  +   M G G  P+   Y  L+  +   G+ D A  ++  +R   +  +
Sbjct: 711 FCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTD 770

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
             ++ +II+   + G  D+   + + +E+    P+  TY+ L E
Sbjct: 771 EIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAMLTE 814



 Score = 45.4 bits (106), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 59/329 (17%), Positives = 110/329 (33%), Gaps = 54/329 (16%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LS  DEM+    K        Y  VI  L K     ++   + +++   C  D  +Y   
Sbjct: 495 LSFIDEMLQKDVKPSTV---NYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTS 551

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI----------- 325
           +  + N+G  ++A  +   M+KG   +D   Y  +I      G+ D A+           
Sbjct: 552 VRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVAS 611

Query: 326 ----------------------------------------KLFQEMKERNFRPSFNIFAS 345
                                                   +LF+ MK+ +   S   + +
Sbjct: 612 MPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLA 671

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           +++   +  RLD    +   M+      +  +Y SL+  + K      A  L   M   G
Sbjct: 672 ILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHG 731

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
           F PN   +  ++      G+ D A  IF  +    +      +  +++     G  D   
Sbjct: 732 FLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCH 791

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            + + +     +P   TY  L   L+ R+
Sbjct: 792 DMISILEQMKCKPSDETYAMLTEELSTRE 820


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 175/382 (45%), Gaps = 6/382 (1%)

Query: 222 EMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           E++ +  +NG S     Y+  I  L +   +E +    + ++ ++  ++   YN ++   
Sbjct: 276 EILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGL 335

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
             KG   +A ++ E M+    S D  TY ++I    K G ++  + L +EMK  N  PS 
Sbjct: 336 CKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSL 395

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             ++SL   + K    D S+ ++ ++   G++     Y  LI+ +   G LD+A +L +E
Sbjct: 396 VSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEE 455

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M      P+   F  ++    K G    A+  F  M   G LP+ +T + +++ H   G+
Sbjct: 456 MVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGR 515

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL-LEMKTMGYSVDVSASD 519
           V+ A+ L N M + G+ P L TY A++  L K +  + A ++  L +K       V  S 
Sbjct: 516 VEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYST 575

Query: 520 VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES--CMKNALYESAKPLLETYVE 577
           ++  + K  +   AL     M   G+ T + +   +  +  C ++ + E A  L +   E
Sbjct: 576 LIDGFAKQSNSQKALMLYARMLKIGV-TPDMVAYTILINILCHRSRMCE-AYNLFKKMTE 633

Query: 578 SAAKVDLVLYTSVLAHLVRCQD 599
           +    D + YTSV+A   R  D
Sbjct: 634 NGMTPDKISYTSVIAGFCRIGD 655



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 186/416 (44%), Gaps = 8/416 (1%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFK 259
           V++FD+L +    + ML    ++   + K G+ L + + N +++ LA+A++ E     F+
Sbjct: 179 VIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFE 238

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGL------PYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++  +    +  +Y ++M  +             +A EI E ME+   S    TY   I 
Sbjct: 239 EMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIY 298

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L + G +++A+   + +   N   +   + +++  + K G LD ++KV  EM+ CG  P
Sbjct: 299 GLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISP 358

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y  LI  + K G ++  L L +EM+ +   P+   ++ +     K    DI++ IF
Sbjct: 359 DVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIF 418

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
            D+  AG+    + YS L++     G +DSA KL   M    L P  S + +L+    K 
Sbjct: 419 RDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKM 478

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
            L   A +    M   G    ++  +V++  + ++G V+ AL  +  M + GI  N F  
Sbjct: 479 GLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTY 538

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
             +     K    E A  L    ++      +V+Y++++    +  + Q    L A
Sbjct: 539 NAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYA 594



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 113/499 (22%), Positives = 214/499 (42%), Gaps = 44/499 (8%)

Query: 75  YCSGKSG----DGEKCNEWTEEIEYLDESGSV------IYTGKGIRSVEPGFD------- 117
           YC G  G    D  +  E  EE+E   ES +V      IY    +  VE   D       
Sbjct: 259 YCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLIS 318

Query: 118 ----------DHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHI 167
                     + ++ G  KK  L+ +   K++E +      P++ T    +    K   +
Sbjct: 319 ANGLVNVYCYNAIIHGLCKKGELDEAL--KVLEEMKSCGISPDVYTYSILIHGFCKQGDV 376

Query: 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
            + L +I +            + S   P    Y  LF  L + R  D  L +F ++    
Sbjct: 377 EKGLYLIEE-----------MKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAG 425

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
            K   +   AY+ +I+       L+ ++   ++++ ++   D  ++  L+  F   GL  
Sbjct: 426 YKYDQT---AYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWV 482

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
            A E +  M +G      +T  ++I +  + GR++ A+ L  EM+ +   P+   + +++
Sbjct: 483 NALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVI 542

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           + + K  + + +++++  M      PS  +Y +LI+ +AK      AL L+  M   G  
Sbjct: 543 NRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVT 602

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+   +T++I       ++  A ++F  M   G  P   +Y+ ++      G +  A  L
Sbjct: 603 PDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWAL 662

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIK 526
           +N M   G  P + TYT+L+    K   +D+A  ++ EMK  G + DV   +VL+  + +
Sbjct: 663 FNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRR 722

Query: 527 DGSVDHALRWLRFMGSSGI 545
            G++D AL  L  M  +G+
Sbjct: 723 RGNLDKALEMLNEMKENGV 741



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 7/234 (2%)

Query: 217 LSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           L+L +EM       GI  +LF+ YN VI  L K  K E +   F  +L  +       Y+
Sbjct: 520 LNLMNEM----QTQGIFPNLFT-YNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYS 574

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            L+  F  +    KA  +Y  M K   + D   Y ++I  L    R+  A  LF++M E 
Sbjct: 575 TLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTEN 634

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
              P    + S++    + G +  +  ++ EM   GH P+   Y SL++ Y K  ++D A
Sbjct: 635 GMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIA 694

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
             L DEM+  G  P+   + ++I +H + G LD A+ +  +M+  G LP   TY
Sbjct: 695 DMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTY 748


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 172/407 (42%), Gaps = 47/407 (11%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAKADKLEMSYC 256
           C +  + +L + ++  GM   F EM    ++ G+   +F+  N  +  L K  K + +  
Sbjct: 302 CMIHGYSILGQWKETAGM---FREM----TRRGLMPDIFTC-NSYMSSLCKHGKSKEAAE 353

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            F  +     K D  +Y+VL+  +  +G       ++ SME      D S Y ++I +  
Sbjct: 354 FFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYG 413

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           K G +D A+ +F +M+ER   P    + +++ +  + GRL  +M  + +M   G +P   
Sbjct: 414 KRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTI 473

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGF-RPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
           +Y SLI+ +   G L  A  L  EM   G  RPN   F  II S  K G++  A  IF  
Sbjct: 474 VYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDL 533

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           +   G  P   T++ L++ +   G+++ A  + ++M S G+ P + TY+ALL        
Sbjct: 534 VIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLD------- 586

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
                                       Y ++G +D  L   R M S G++        +
Sbjct: 587 ---------------------------GYCRNGRIDDGLILFREMLSKGVKPTTITYGII 619

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR--CQDE 600
                 +     AK +    +ES   +D+     +L  L R  C DE
Sbjct: 620 LHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDE 666



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 162/404 (40%), Gaps = 3/404 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  +   L E       L L   MV  S     ++ S YN VI    +  ++  +
Sbjct: 188 PDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVS-YNTVIHGFFREGEVSKA 246

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F +++      D  +Y+  +          KA  +   M       D  TY  MI  
Sbjct: 247 CNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHG 306

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            +  G+      +F+EM  R   P      S + S+ K G+   + + +  M   GH+P 
Sbjct: 307 YSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPD 366

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  L+  YA  G +   L L++ M   G   +  ++ ++I+++ K G +D AM IFT
Sbjct: 367 LVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFT 426

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M+  G +P   TY  ++   +  G++  AM  +N M + GL+P    Y +L+       
Sbjct: 427 QMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHG 486

Query: 495 LVDVAAKILLEMKTMGYSV--DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
            +  A +++ EM + G      V  + ++    K+G V  A      +   G R +    
Sbjct: 487 NLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITF 546

Query: 553 RQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             L +        E A  +L+  +    + D+V Y+++L    R
Sbjct: 547 NSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCR 590



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 138/309 (44%), Gaps = 6/309 (1%)

Query: 216 MLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           ML+LF+ M      NGI +  S YN +I    K   ++ +   F ++ +     D  +Y 
Sbjct: 386 MLNLFNSM----EGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYG 441

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            ++  F   G    A + +  M       D   Y  +I      G L  A +L  EM  R
Sbjct: 442 TVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSR 501

Query: 335 NF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
              RP+   F S+++S+ K GR+  +  ++  +   G RP    + SLI+ Y   GK++ 
Sbjct: 502 GIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEK 561

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  + D M   G  P+   ++ +++ + ++G++D  + +F +M   G  PT  TY  +L 
Sbjct: 562 AFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILH 621

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
              + G+   A K+ + M  +G    +ST   +L  L +    D A  +  ++  M    
Sbjct: 622 GLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKF 681

Query: 514 DVSASDVLM 522
           +++  + ++
Sbjct: 682 NIAIINTMI 690



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 141/326 (43%), Gaps = 6/326 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYESM 296
           Y  VI   ++  +L  +   F +++    K DT  YN L+  F   G   KA E I E M
Sbjct: 440 YGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMM 499

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +G    +   +  +I SL K GR+  A  +F  +     RP    F SL+D  G  G++
Sbjct: 500 SRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKM 559

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +  V   M   G  P    Y +L++ Y + G++D  L L+ EM   G +P    + +I
Sbjct: 560 EKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGII 619

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +      G+   A  +  +M  +G     ST   +L     +   D A+ L+  + +  +
Sbjct: 620 LHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNV 679

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALR 535
           +  ++    ++  + K +  + A ++   +   G   + S   V++   +K+GSV+ A  
Sbjct: 680 KFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADN 739

Query: 536 WLRFMGSSGI----RTNNFIVRQLFE 557
               M  SG     R  N I+R L E
Sbjct: 740 MFSLMEKSGCAPSSRLLNNIIRVLLE 765



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 138/329 (41%), Gaps = 4/329 (1%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK-LFQE 330
           +YN+LM        P   F ++    K     D     +++  L  + R D A+  L   
Sbjct: 121 TYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHR 180

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM--QGCGHRPSAPMYVSLIESYAKA 388
           M E    P    +++++ S+ +  R   ++ +   M  +  G  P+   Y ++I  + + 
Sbjct: 181 MPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFRE 240

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G++  A  L+ EM   G  P+   ++  I++  K+  +D A  +   M   GF P   TY
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTY 300

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           +C++  ++  GQ      ++  MT  GL P + T  + ++ L K      AA+    M  
Sbjct: 301 NCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAA 360

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G+  D V+ S +L  Y  +G V   L     M  +GI  ++ +   L ++  K  + + 
Sbjct: 361 KGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDE 420

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           A  +     E     D   Y +V+A   R
Sbjct: 421 AMLIFTQMQERGVMPDAWTYGTVIAAFSR 449



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 109/234 (46%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ ++    +  +++     F+++L    K  T +Y +++    N G    A ++   M 
Sbjct: 581 YSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMI 640

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +   ++D ST  +++  L ++   D AI LF+++   N + +  I  +++D+M K  + +
Sbjct: 641 ESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKRE 700

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + +++  +   G  P+A  Y  +I +  K G ++ A  ++  M  +G  P+  L   II
Sbjct: 701 EANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNII 760

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
               + G++  A +  + ++        ST S +L + +  G+    +K   +M
Sbjct: 761 RVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKGKYREQIKSLPAM 814



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/291 (19%), Positives = 123/291 (42%), Gaps = 35/291 (12%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N +I  L K  ++  +   F  V+    + D  ++N L+  +   G   KAF + ++M 
Sbjct: 511 FNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMI 570

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  TY  ++    ++GR+D  + LF+EM  +  +P+   +  ++  +   GR  
Sbjct: 571 SVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTV 630

Query: 358 TSMKVYMEM---------QGCG------------------HRPSAPMYV--------SLI 382
            + K+  EM           CG                   +    M V        ++I
Sbjct: 631 GAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMI 690

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           ++  K  K + A  L+D +   G  PN   + ++I +  K G ++ A ++F+ ME++G  
Sbjct: 691 DAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCA 750

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           P+    + ++ +    G++  A    + +    +    ST + +L+L +++
Sbjct: 751 PSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRK 801


>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
 gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
          Length = 1354

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 122/558 (21%), Positives = 233/558 (41%), Gaps = 52/558 (9%)

Query: 269  DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
            +T +Y+ L++ +   G   +A    ++M       + +    ++ +  ++G+     + +
Sbjct: 669  NTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFY 728

Query: 329  QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            Q + E    P+   F  +  +  + G L+ +  +Y +M+  G  PS  ++ +L+  Y++ 
Sbjct: 729  QRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRE 788

Query: 389  GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
                 A  L  +++ AG   +  ++  +I  ++K G    A  +F  M+  G  P  +T+
Sbjct: 789  TVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTF 848

Query: 449  SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
            + L+ +++ +  V  A  L   M   G  P +STYT L++   + +  + A  +   +  
Sbjct: 849  NTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAE 908

Query: 509  MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
             G   D +A +V++ VY K G        +  M + G   +   +  L +S  K      
Sbjct: 909  TGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGK 968

Query: 568  AKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQNERHLMAIL---------------- 610
            A+ +LET  E     D + YTS++ +HL       N+ +L A++                
Sbjct: 969  AEEVLETLPEIGMSPDAIHYTSIINSHL------NNKDYLSAVIWLRKMTDACVRPTHVT 1022

Query: 611  --------SATKHKAHAFLC------GLFTGPEQRKQPVLSFVREFFHGIDYELEEG--- 653
                    S  +  +HA +         F+ P +        V +    I  +L+E    
Sbjct: 1023 ITCFVGAASVCERSSHALMLLKALSEAGFSLPLRLMTECTPKVVQDMQDIFDQLQESGPE 1082

Query: 654  AARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 713
            A +  VNVL++ L    Q   A  V+ VA E+ ++ + +   +   W  D R LS GAAL
Sbjct: 1083 ACQGVVNVLMDLLWAFRQCATAALVFAVAIESNIYTQVLARVKDRNWGADFRRLSPGAAL 1142

Query: 714  IAVMHTLHRFRKRMLYYGVVPRR--------IKLVTGPTLKIVIAQMLSSVESPFEVSKV 765
            +A++  L + +   L    VP +         KL    ++   I   L  + SPF  SK 
Sbjct: 1143 VALILWLDQMQDASLQGSPVPPKSIQIDIGSSKLNNQASVSNTIKTHLWQMGSPFLPSKT 1202

Query: 766  ---VLRAPGDSVMEWFKK 780
               VL A   ++  W K+
Sbjct: 1203 RAGVLVAKSHALCMWLKE 1220



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 167/378 (44%), Gaps = 7/378 (1%)

Query: 172 KVINDS-DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN 230
           +V N S   +L L+       WY P      ++  VL  +        LFD     S  N
Sbjct: 54  RVANTSWQRALELYECLNVARWYAPNPRMLAVMLSVLGRANQPGLAQELFDR-AESSIGN 112

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-A 289
            + ++++   V       + ++   C   ++ D  C+ D  ++N+++      G+    A
Sbjct: 113 CVQVYNSLMSVYARHGDWNSVQQLLC---RMQDRGCRPDLVTFNIVIKARTRGGMQEGLA 169

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
             + + +       D  TY  +I + + + RL  AI +F+EM+ +   P    + +++  
Sbjct: 170 SSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISV 229

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
            G+AGR++ +  ++  MQ  G  P A  Y S++ ++A+ G+++   R+   MR A    +
Sbjct: 230 YGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSD 289

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              +  +I  + K+G    A  ++  M+  G  P   T++ L++    +G V+ A  ++ 
Sbjct: 290 EITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFE 349

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDG 528
            M  + +RP L  ++A++   AK  +   A      M   G   D+ A  V++ V+ K  
Sbjct: 350 DMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAE 409

Query: 529 SVDHALRWLRFMGSSGIR 546
             +  +   + M  SG++
Sbjct: 410 MPEKCIILYKAMVGSGLK 427



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 147/295 (49%), Gaps = 2/295 (0%)

Query: 201 VMLFDVLNESRDFDGML-SLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           ++ F+++ ++R   GM   L   ++ D    G+   +  YN +I   +  ++L  +   F
Sbjct: 149 LVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIF 208

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +++    C  D  +YN +++++   G    A  I+  M++   + D  TY  ++ + A+ 
Sbjct: 209 EEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARD 268

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR++   ++   M++         + +++   GKAG    + ++Y++M+  G  P +  +
Sbjct: 269 GRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTF 328

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI++  KAG ++ A  ++++M  +  RP    F+ +I ++AK+     A   ++ M R
Sbjct: 329 TVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLR 388

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           AG  P    YS +L++   +   +  + LY +M  +GL+P LS Y  ++ +  ++
Sbjct: 389 AGVRPDLLAYSVMLDVFFKAEMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQK 443



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 164/381 (43%), Gaps = 6/381 (1%)

Query: 215 GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD---SDCKIDTQ 271
           G  S  +E +  S   G +  S + +V+  +A  D+  M      + LD      ++D +
Sbjct: 544 GRFSEAEEEMRTSQTYGQAQVSDFLKVL--VASYDRAGMQDEALARFLDMTTEGLEMDAE 601

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
                +  +  KG  + A E+           D + +  +I S  K      A  +F+++
Sbjct: 602 VLQTAVMCYCRKGFAFVAHELLIDCLHAFEVKDSAMHVAIIASYGKLKLWQNAEIVFRDL 661

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           +   F  + + +++L+ +  + G  + + +    M   G +P+A     ++E++ +AGK 
Sbjct: 662 QRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGRAGKA 721

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
                 +  +   G  PN   F +I  + +++G L+ A S++  M  AGF P+   +  L
Sbjct: 722 KELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKAL 781

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           L +++       A +L   +  AGL   +  Y  +++L +K      AA +   M+ +G 
Sbjct: 782 LALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGC 841

Query: 512 SVDVSASDVL-MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           S D +  + L M+Y ++  V  A   LR M  +G   N      L  +  +   YE A+ 
Sbjct: 842 SPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAEL 901

Query: 571 LLETYVESAAKVDLVLYTSVL 591
           + ++  E+  K D   Y  ++
Sbjct: 902 VFKSIAETGCKPDATAYNVMI 922



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 134/298 (44%), Gaps = 11/298 (3%)

Query: 194  VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA----YNRVIQYLAKAD 249
             P    +V++F   + + + +   S++ +M        I +F A    Y+R      + D
Sbjct: 737  TPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRET---VEID 793

Query: 250  KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
              E+     K +  +  ++D   YN +++L+   G   KA  +++ M++  CS D +T+ 
Sbjct: 794  AEEL----VKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFN 849

Query: 310  LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
             +I   +++  +  A  L +EM +    P+ + + +L+ + G+    + +  V+  +   
Sbjct: 850  TLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAET 909

Query: 370  GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
            G +P A  Y  +I  Y KAG+      + ++M+  GF P+     M+++S+ K G    A
Sbjct: 910  GCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKA 969

Query: 430  MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
              +   +   G  P    Y+ ++  H ++    SA+     MT A +RP   T T  +
Sbjct: 970  EEVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRPTHVTITCFV 1027



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 142/321 (44%), Gaps = 7/321 (2%)

Query: 275 VLMTLFLNKGLPYKAFEIYESMEK--GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           V++++      P  A E+++  E   G C      Y  ++   A+ G  ++  +L   M+
Sbjct: 85  VMLSVLGRANQPGLAQELFDRAESSIGNCV---QVYNSLMSVYARHGDWNSVQQLLCRMQ 141

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDT-SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           +R  RP    F  ++ +  + G  +  +  +  ++   G RP    Y +LI + +   +L
Sbjct: 142 DRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRL 201

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A+ +++EM+  G  P+   +  +I  + ++G+++ A SIF  M+  GF P   TY+ +
Sbjct: 202 SDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSV 261

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           L   A  G+++   ++   M  A       TY  ++ +  K  +   A ++ ++MK  G 
Sbjct: 262 LHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGR 321

Query: 512 SVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D     VL+  + K G V+ A      M  S +R        +  +  K  ++  A+ 
Sbjct: 322 CPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEH 381

Query: 571 LLETYVESAAKVDLVLYTSVL 591
                + +  + DL+ Y+ +L
Sbjct: 382 TYSCMLRAGVRPDLLAYSVML 402



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 7/269 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLS----LFDEMVHDSSKNGISLFSAYNRVIQYL 245
           Q  Y  G     + ++ L  +   +  LS    +F+EM        I     YN +I   
Sbjct: 174 QDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIW---TYNAMISVY 230

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
            +A ++E +   F+ + +     D  +YN ++  F   G   +   I   M    CS D 
Sbjct: 231 GRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDE 290

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            TY  MI    K+G    A +L+ +MKE    P    F  L+D++GKAG ++ +  ++ +
Sbjct: 291 ITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFED 350

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M     RP+   + ++I +YAKA     A   +  M  AG RP+   ++++++   K+  
Sbjct: 351 MLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEM 410

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
            +  + ++  M  +G  P  S Y+ ++ +
Sbjct: 411 PEKCIILYKAMVGSGLKPELSVYAIMVRV 439



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/311 (19%), Positives = 121/311 (38%), Gaps = 36/311 (11%)

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           SG+L  A  L   +       + +++  L   + KAGR   + +     Q  G    +  
Sbjct: 508 SGKLSDARDLVHAVSSIEPSVAAHLYKRLALMLAKAGRFSEAEEEMRTSQTYGQAQVSDF 567

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGF---------------RPNF------------ 410
              L+ SY +AG  D AL  + +M   G                R  F            
Sbjct: 568 LKVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCL 627

Query: 411 --------GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
                    +   II S+ K      A  +F D++R GF    S YS LL  +A +G  +
Sbjct: 628 HAFEVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFE 687

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
            A +  ++M +AGL+P  +    +L    +       ++    +  MG + +     V+ 
Sbjct: 688 RATRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIF 747

Query: 523 -VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             + ++G+++ A    R M  +G   +  + + L     +  +   A+ L++   ++  +
Sbjct: 748 HAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLE 807

Query: 582 VDLVLYTSVLA 592
           +D+ +Y  +++
Sbjct: 808 LDMDIYNHMIS 818


>gi|356532365|ref|XP_003534744.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 705

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 128/572 (22%), Positives = 249/572 (43%), Gaps = 50/572 (8%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           V + D +        +L  F + +  S+   + L   YN  ++   K+   E +   F +
Sbjct: 133 VFILDKMTNPETAPFVLGHFRDKIKPSTDKEVIL---YNATLKAFRKSRDFEGAEKLFDE 189

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +L    K D  +++ L+       LP KA E ++ M    C  D  T   M+ + A++  
Sbjct: 190 MLQRGVKPDNITFSTLINSARMCALPDKAVEWFKKMPSFGCEPDAMTCSAMVSAYAQTNN 249

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +D A+ L+   K   +    + F++L+   G  G     ++++ EM+  G +P+   Y +
Sbjct: 250 VDMALSLYGRAKAEKWSLDASTFSTLIKMYGVLGNYVECLRIFGEMKVLGVKPTVVTYNT 309

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L+ S  ++ K   A  ++ EM   G  P+F  +  ++  +A +   + A+S++ +M+  G
Sbjct: 310 LLGSLFRSKKSWQAKNVYKEMISNGVSPDFITYATLLRIYAGAQYREDALSVYKEMKGNG 369

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-LRPGLSTYTALLTLLAKRKLVDVA 499
              T   Y+ LL+M A  G ++ A++++  M S+G  +P   T+++L+T+ +    V  A
Sbjct: 370 MDMTVDLYNRLLDMCADVGCIEEAVEIFEDMKSSGTCQPDSLTFSSLITVYSCNGKVSEA 429

Query: 500 AKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +L EM   G+   +   + ++  Y +    D  ++  + +   GI  + +     F  
Sbjct: 430 EGMLNEMIQSGFQPTIYVLTSLVQCYGRAKQTDDVVKIFKQLLDLGIVPDVY-----FCC 484

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAH 618
           C+ N + ++ K       +   K +  L  SV+ +LV  Q+                   
Sbjct: 485 CLLNVMTQTPKEEFGKLTDCIEKANTRL-GSVVRYLVEGQEGD----------------- 526

Query: 619 AFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCV 678
               G F     RK+       E  + ID++++    +   N L++  V +   NRAR V
Sbjct: 527 ----GDF-----RKE-----ASELLNSIDFKVK----KPLCNCLIDLCVSLNAPNRARDV 568

Query: 679 WKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIK 738
             +    +++ K I       WSL ++ LSVGAA+ A+   ++   K +  +  +P  + 
Sbjct: 569 LDLGLMLEIY-KNIQSRSETQWSLHLKKLSVGAAITALHVWINDLSKALESWEDLPPLLG 627

Query: 739 LVTGPTLKIVIAQMLSSVESPFEVSKVVLRAP 770
           + TG        + L+SV   FE     L AP
Sbjct: 628 VNTGQGKHKYSDKGLASV---FESHLRELNAP 656



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 146/317 (46%), Gaps = 4/317 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y        +SRDF+G   LFDEM+    K     FS      +  A  DK   +   FK
Sbjct: 167 YNATLKAFRKSRDFEGAEKLFDEMLQRGVKPDNITFSTLINSARMCALPDK---AVEWFK 223

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+    C+ D  + + +++ +        A  +Y   +  + SLD ST+  +I      G
Sbjct: 224 KMPSFGCEPDAMTCSAMVSAYAQTNNVDMALSLYGRAKAEKWSLDASTFSTLIKMYGVLG 283

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
                +++F EMK    +P+   + +L+ S+ ++ +   +  VY EM   G  P    Y 
Sbjct: 284 NYVECLRIFGEMKVLGVKPTVVTYNTLLGSLFRSKKSWQAKNVYKEMISNGVSPDFITYA 343

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +L+  YA A   + AL ++ EM+  G      L+  +++  A  G ++ A+ IF DM+ +
Sbjct: 344 TLLRIYAGAQYREDALSVYKEMKGNGMDMTVDLYNRLLDMCADVGCIEEAVEIFEDMKSS 403

Query: 440 GFL-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
           G   P   T+S L+ +++ +G+V  A  + N M  +G +P +   T+L+    + K  D 
Sbjct: 404 GTCQPDSLTFSSLITVYSCNGKVSEAEGMLNEMIQSGFQPTIYVLTSLVQCYGRAKQTDD 463

Query: 499 AAKILLEMKTMGYSVDV 515
             KI  ++  +G   DV
Sbjct: 464 VVKIFKQLLDLGIVPDV 480



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 111/246 (45%), Gaps = 9/246 (3%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGD--ECYVMLFDVLNESRDFDGMLSLFDEMV 224
           +  A    N+ D +LSL+  AK + W +        + ++ VL    ++   L +F EM 
Sbjct: 240 MVSAYAQTNNVDMALSLYGRAKAEKWSLDASTFSTLIKMYGVLG---NYVECLRIFGEMK 296

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
               K  +     YN ++  L ++ K   +   +K+++ +    D  +Y  L+ ++    
Sbjct: 297 VLGVKPTV---VTYNTLLGSLFRSKKSWQAKNVYKEMISNGVSPDFITYATLLRIYAGAQ 353

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIF 343
               A  +Y+ M+     +    Y  ++   A  G ++ A+++F++MK     +P    F
Sbjct: 354 YREDALSVYKEMKGNGMDMTVDLYNRLLDMCADVGCIEEAVEIFEDMKSSGTCQPDSLTF 413

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
           +SL+      G++  +  +  EM   G +P+  +  SL++ Y +A + D  ++++ ++  
Sbjct: 414 SSLITVYSCNGKVSEAEGMLNEMIQSGFQPTIYVLTSLVQCYGRAKQTDDVVKIFKQLLD 473

Query: 404 AGFRPN 409
            G  P+
Sbjct: 474 LGIVPD 479


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 190/421 (45%), Gaps = 7/421 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FS 236
           D +++LF+   R S  +P    +   F  +  ++ F+ +L    ++      NGI+    
Sbjct: 70  DDAIALFQEMIR-SRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQL----ELNGIAHNIY 124

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
             N +I    +  K   +Y    KV+    + DT ++N L+     +G   +A  + + M
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRM 184

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C  D  TY  ++  + +SG    A+ L ++M+ERN +     +++++DS+ + G +
Sbjct: 185 VENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCI 244

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ ++ EM+  G + S   Y SL+    KAGK +    L  +M      PN   F ++
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K GKL  A  ++ +M   G  P   TY+ L++ +    ++  A  + + M     
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P + T+T+L+      K VD   K+   +   G   + V+ S ++  + + G +  A  
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 424

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             + M S G+  +      L +    N   E A  + E   +S   + +V+YT+++  + 
Sbjct: 425 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 484

Query: 596 R 596
           +
Sbjct: 485 K 485



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 187/432 (43%), Gaps = 51/432 (11%)

Query: 173 VINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           +    DTSL+L    K +   V  D   Y  + D L      D  +SLF EM     K+ 
Sbjct: 203 ICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSS 262

Query: 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291
           +     YN +++ L KA K        K ++  +   +  ++NVL+ +F+ +G   +A E
Sbjct: 263 VV---TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +Y+ M     S +  TY  ++       RL  A  +   M      P    F SL+    
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
              R+D  MKV+  +   G   +A  Y  L++ + ++GK+  A  L+ EM   G  P+  
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            + ++++    +GKL+ A+ IF D++++        Y+ ++E     G+V+ A  L+ S+
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL 499

Query: 472 TSAGLRPGLSTYTALLTLLAK-----------RKL------------------------V 496
              G++P + TYT +++ L K           RK+                        +
Sbjct: 500 PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDL 559

Query: 497 DVAAKILLEMKTMGYSVDVSA----SDVLMVYIKDGSVDHALR--------WLRFMGSSG 544
             +AK++ EMK+ G+S D S+     D+L+  +K  ++ + L          L   GS  
Sbjct: 560 TASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDLLELSGSEK 619

Query: 545 IRTNNFIVRQLF 556
           IR ++    ++F
Sbjct: 620 IRLSSLTFVKMF 631



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 166/362 (45%), Gaps = 1/362 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + +N +I+ L    K+  +     +++++ C+ D  +YN ++      G    A ++   
Sbjct: 159 TTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRK 218

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+     D  TY  +I SL + G +DAAI LF+EM+ +  + S   + SLV  + KAG+
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
            +    +  +M      P+   +  L++ + K GKL  A  L+ EM   G  PN   +  
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +++ +    +L  A ++   M R    P   T++ L++ +    +VD  MK++ +++  G
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHAL 534
           L     TY+ L+    +   + +A ++  EM + G   DV    +L+  + D G ++ AL
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                +  S +     +   + E   K    E A  L  +      K +++ YT +++ L
Sbjct: 459 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 518

Query: 595 VR 596
            +
Sbjct: 519 CK 520


>gi|357153642|ref|XP_003576519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Brachypodium distachyon]
          Length = 620

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 177/388 (45%), Gaps = 4/388 (1%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           + D L ++R FD +  LFDEM+   S+  +     YN ++        +  ++  + +++
Sbjct: 131 ILDGLVKARRFDRVWKLFDEML---SRGMVPSLVTYNTLVNACRHEGDMTKAWEVWNQMV 187

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
                 +  +Y+ ++ +   +G   +A  ++  M++     +  TY  ++ S  K   ++
Sbjct: 188 ARRIDPNVVTYSTMICVLCEEGCVIEAERLFIMMKETGVQPNLYTYNALMSSHCKRDGVN 247

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
             + L+QE+ +    P+  I  +L+     A R+      ++EM   G  P+ P+Y SLI
Sbjct: 248 RTLTLYQELLKSGLVPNAVIITTLIGGFFLANRISDVKNAFLEMHRYGIAPTVPVYNSLI 307

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           +   ++G    AL ++ +M   G  P+    ++I+      G++ +A      M+++G  
Sbjct: 308 DGAFRSGYAQEALTVYQDMTRVGLCPDEFTCSIIVRGLCCGGQVQVATRFLELMQQSGIN 367

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
              + Y+ L++ H   G +  A+     M   G+ P + TY++L+   +K++ +++A  I
Sbjct: 368 LNAAAYNALIDEHCKDGNLAEALATCTRMNEVGIEPNVVTYSSLIDGHSKKRKMEIAMGI 427

Query: 503 LLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
            +EM   G   +V + + ++  + K G +D A R  + M   GI +N   V  L +   +
Sbjct: 428 YMEMVAKGVEPNVLTYTAMIHGHAKFGDLDAAFRLHKEMAEKGISSNAITVSVLVDGLCR 487

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTS 589
            +  + A   +  Y       D+  + S
Sbjct: 488 ESRVQDAVMFIMKYAGQKKPGDINSFCS 515



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 91/218 (41%), Gaps = 20/218 (9%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A    E M++   +L+ + Y  +I    K G L  A+     M E    P+   ++SL+D
Sbjct: 354 ATRFLELMQQSGINLNAAAYNALIDEHCKDGNLAEALATCTRMNEVGIEPNVVTYSSLID 413

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
              K  +++ +M +YMEM   G  P+   Y ++I  +AK G LD A RL  EM   G   
Sbjct: 414 GHSKKRKMEIAMGIYMEMVAKGVEPNVLTYTAMIHGHAKFGDLDAAFRLHKEMAEKGISS 473

Query: 409 NF--------GL-----------FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           N         GL           F M      K G ++   S +T  E    L +  TY 
Sbjct: 474 NAITVSVLVDGLCRESRVQDAVMFIMKYAGQKKPGDINSFCSNYTTEEDCSILNS-VTYM 532

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            L+      GQ   A K ++ M  + + P   TY+ L+
Sbjct: 533 TLIYGLYIDGQYHEAGKFFSCMRESDMVPDSFTYSLLI 570



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 123/293 (41%), Gaps = 10/293 (3%)

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           +++ +L++ G  D A+ +F  +      P+ N   +++D + KA R D   K++ EM   
Sbjct: 98  VLVIALSQMGLHDDALSVFCRLPTLPALPACN---AILDGLVKARRFDRVWKLFDEMLSR 154

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  PS   Y +L+ +    G +  A  +W++M      PN   ++ +I    + G +  A
Sbjct: 155 GMVPSLVTYNTLVNACRHEGDMTKAWEVWNQMVARRIDPNVVTYSTMICVLCEEGCVIEA 214

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT- 488
             +F  M+  G  P   TY+ L+  H     V+  + LY  +  +GL P     T L+  
Sbjct: 215 ERLFIMMKETGVQPNLYTYNALMSSHCKRDGVNRTLTLYQELLKSGLVPNAVIITTLIGG 274

Query: 489 -LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIR 546
             LA R + DV     LEM   G +  V   + L+    + G    AL   + M   G+ 
Sbjct: 275 FFLANR-ISDV-KNAFLEMHRYGIAPTVPVYNSLIDGAFRSGYAQEALTVYQDMTRVGLC 332

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
            + F    +          + A   LE   +S   ++   Y +++     C+D
Sbjct: 333 PDEFTCSIIVRGLCCGGQVQVATRFLELMQQSGINLNAAAYNALIDE--HCKD 383


>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 484

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 194/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E     GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKVGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 EXL 483


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 148/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   + VP D C  +L + L + + F  +   + E++       +  F   N
Sbjct: 85  AIECYRLTREHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYKEILECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ +S   F  +     +    S+N LM  ++ +G   K F +  +M   
Sbjct: 141 ILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM ++   P+   F +L+D   K G++D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L +EM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M           Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
             TYT ++    K+  V   +K+L EM+  G+
Sbjct: 381 SGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH 412



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 146/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  S  V+  ++  G RPS   + +L+  Y + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQ 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    KDG ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPDSGTYTMIINEFCKKGD 396



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 146/319 (45%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  +E  FR  F+    +++ + K     
Sbjct: 59  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G++  +  ++D +R  G RP+   F  ++
Sbjct: 119 LVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A +L+  M   GL 
Sbjct: 179 NGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L +   K+   E+A    +  +E   ++D V YT++++ L  
Sbjct: 299 INEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGL-- 356

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 357 CQEGRSVDAEKMLREMLSV 375



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 141/311 (45%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  +K++L+         +N+LM  F  +G    +  +++
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        ++  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 161 AIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKES 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K GK+D A+ ++ +M      P+   + 
Sbjct: 221 KMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A ++  +M   G  P   TY+ L++     G +++A +    M   
Sbjct: 281 TLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   D     +++  + K G V   
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTG 400

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 401 SKLLKEMQRDG 411



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K++ +   F ++LD     +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P+ G +TMI
Sbjct: 328 ETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G +P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 148/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  ++ + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVI-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +   M+  
Sbjct: 141 ILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  T+ ++I  L K  ++D A +LF EM +    P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L     L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRXGY 412



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 146/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y   ++ +  +   T   +I  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ +  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKI 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M+ +G +P+    +++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +     ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 141/315 (44%), Gaps = 1/315 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +VI++L K    ++ +  +++ L+         +N+LM  F  +G    A  +++
Sbjct: 101 FDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           S+ K        ++  ++    K G LD   +L   M+    +P     + L++ + K  
Sbjct: 161 SITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKES 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 221 KMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L     +  +M   G  P   TY+ L++ +   G +++A +    M   
Sbjct: 281 TLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   ++    +++  + K G V   
Sbjct: 341 NIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 534 LRWLRFMGSSGIRTN 548
            + L+ M   G   N
Sbjct: 401 SKLLKEMQRXGYXPN 415



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 89/211 (42%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            ++ +I  L K  K++ +   F ++LB+    +  ++  L+      G    A EIY  M
Sbjct: 208 THSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I  L K G L     L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+ +    M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G+ P   T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRXGYXPNXVT 418


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 182/439 (41%), Gaps = 11/439 (2%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS---AYNRVIQYLAKADK 250
           VP  + Y +L D L + +  +   SL  EM      N + LF+   AY+ +I  L K   
Sbjct: 277 VPSRQSYNLLIDGLCKQKRLEDAKSLLVEM------NSVGLFADNVAYSILIDGLLKGRN 330

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
            + +     +++     ID   Y+  + +   +G   KA  +++ M     +     Y  
Sbjct: 331 ADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYAS 390

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I    +   +    +L  E+K+RN   S   + + V  M  +G LD +  +  EM   G
Sbjct: 391 LIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASG 450

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
            RP+  +Y +LI+++ +  +   A+R+  EMR  G  P+   +  +I   +K+ K+D A 
Sbjct: 451 CRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEAR 510

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           S   +M   GF P   TY   +  +  +G+  SA K    M   G+ P     T L+   
Sbjct: 511 SFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEY 570

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNN 549
            K+  V  A      M   G   D     VLM   +K+G V+ A      M   GI  + 
Sbjct: 571 CKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDV 630

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609
           F    L +   K    + A  + +  V++    ++++Y  +L    R  + +  + L+  
Sbjct: 631 FSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDE 690

Query: 610 LSATKHKAHAFL-CGLFTG 627
           +S      +A   C +  G
Sbjct: 691 MSGKGFPPNAVTYCTIIDG 709



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 152/345 (44%), Gaps = 1/345 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y   ++ +  +  L+ +Y   K++  S C+ +   Y  L+  FL K     A  + + M
Sbjct: 422 TYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEM 481

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   + D   Y  +I  L+K+ ++D A     EM E  F+P    + + +    +AG  
Sbjct: 482 REQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEF 541

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            ++ K   EM  CG  P+  +   LI  Y K GK+  A   +  M   G   +   +T++
Sbjct: 542 ASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVL 601

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K+GK++ A  IF +M   G  P   +Y  L++  +  G +  A  +++ M  AGL
Sbjct: 602 MNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGL 661

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
              +  Y  LL    +   ++ A ++L EM   G+  + V+   ++  Y K G +  A +
Sbjct: 662 TSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQ 721

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
               M   G+  ++F+   L + C +    E A  + ET  +  A
Sbjct: 722 LFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCA 766



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 173/402 (43%), Gaps = 6/402 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCF 258
           Y +L D L + R+ D    L  EMV     +G S+    Y+  I  ++K   +E +   F
Sbjct: 318 YSILIDGLLKGRNADAANGLVHEMVS----HGFSIDPMMYDYFICVMSKEGAMEKAKALF 373

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             ++        ++Y  L+  F  +    K +E+   ++K    +   TY   +  +  S
Sbjct: 374 DGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSS 433

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G LD A  + +EM     RP+  I+ +L+ +  +  R   +++V  EM+  G  P    Y
Sbjct: 434 GDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCY 493

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SLI   +KA K+D A     EM   GF+P+   +   I  + ++G+   A     +M  
Sbjct: 494 NSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLE 553

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G +P     + L+  +   G+V  A   + SM   G+     TYT L+  L K   V+ 
Sbjct: 554 CGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVND 613

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A +I  EM+  G + DV +   L+  + K G++  A      M  +G+ +N  I   L  
Sbjct: 614 AEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLG 673

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              ++   E AK LL+         + V Y +++    +  D
Sbjct: 674 GFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGD 715



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 140/309 (45%), Gaps = 14/309 (4%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL--- 245
           R+    P   CY  L   L++++  D   S   EMV +  K     + A+  +  Y+   
Sbjct: 482 REQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAF--ISGYIEAG 539

Query: 246 --AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303
             A ADK        K++L+     +      L+  +  KG   +A   + SM +     
Sbjct: 540 EFASADKY------VKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILG 593

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY +++  L K+G+++ A ++F EM+ +   P    + +L+D   K G +  +  ++
Sbjct: 594 DAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIF 653

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            EM   G   +  +Y  L+  + ++G+++ A  L DEM   GF PN   +  II+ + KS
Sbjct: 654 DEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKS 713

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G L  A  +F +M+  G +P    Y+ L++       V+ A+ ++ +    G     + +
Sbjct: 714 GDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFET-NEKGCASSSAPF 772

Query: 484 TALLTLLAK 492
            AL+  + K
Sbjct: 773 NALINWVFK 781



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 159/376 (42%), Gaps = 24/376 (6%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG-------------- 284
           N ++  L K ++L++ +  +K +++ +   D QSY +L+      G              
Sbjct: 193 NHLLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEE 252

Query: 285 -LPYKAFEIYESME-KGECSLDG-----STYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
            L      + E++E K   S  G      +Y L+I  L K  RL+ A  L  EM      
Sbjct: 253 ELGTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLF 312

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
                ++ L+D + K    D +  +  EM   G      MY   I   +K G ++ A  L
Sbjct: 313 ADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKAL 372

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +D M   G  P    +  +IE   +   +     +  ++++   + +P TY   ++   S
Sbjct: 373 FDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCS 432

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALL-TLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           SG +D A  +   M ++G RP +  YT L+ T L K +  D A ++L EM+  G + D  
Sbjct: 433 SGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGD-AVRVLKEMREQGIAPDTF 491

Query: 517 ASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
             + L++ + K   +D A  +L  M  +G + + F         ++   + SA   ++  
Sbjct: 492 CYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEM 551

Query: 576 VESAAKVDLVLYTSVL 591
           +E     + VL T ++
Sbjct: 552 LECGVIPNKVLCTGLI 567



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 141/300 (47%), Gaps = 10/300 (3%)

Query: 214 DGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           +G ++  +E+ H+    GI+  +FS Y  +I   +K   ++ +   F +++ +    +  
Sbjct: 608 NGKVNDAEEIFHEMRGKGIAPDVFS-YGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVI 666

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
            YN+L+  F   G   KA E+ + M       +  TY  +I    KSG L  A +LF EM
Sbjct: 667 IYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEM 726

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVY-MEMQGCGHRPSAPMYVSLIESYAKAGK 390
           K +   P   ++ +LVD   +   ++ ++ ++    +GC    SAP + +LI    K GK
Sbjct: 727 KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCAS-SSAP-FNALINWVFKFGK 784

Query: 391 LDTALRLWDEMRIAGF----RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
            +    + + +    F    +PN   + ++I+   K G L+ A  +F  M++A  +PT  
Sbjct: 785 TELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVI 844

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TY+ LL  +   G+      +++ + +AG+ P    Y+ ++    K  +   A  +L +M
Sbjct: 845 TYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQM 904



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 140/337 (41%), Gaps = 15/337 (4%)

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
           +++Y+ M +     D  +YE++I +  + G +  A  +  + +E     + N+       
Sbjct: 209 WDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNV------- 261

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
                  D ++++   M   G  PS   Y  LI+   K  +L+ A  L  EM   G   +
Sbjct: 262 -------DEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFAD 314

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              ++++I+   K    D A  +  +M   GF   P  Y   + + +  G ++ A  L++
Sbjct: 315 NVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFD 374

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDG 528
            M + G+ PG   Y +L+    + K V    ++L+E+K     +   +    +      G
Sbjct: 375 GMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSG 434

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
            +D A   ++ MG+SG R N  I   L ++ ++ + +  A  +L+   E     D   Y 
Sbjct: 435 DLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYN 494

Query: 589 SVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLF 625
           S++  L + +     R  +  +     K  AF  G F
Sbjct: 495 SLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAF 531



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 109/264 (41%), Gaps = 13/264 (4%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           + P    Y  + D   +S D      LFDEM     K  +     Y  ++    + + +E
Sbjct: 696 FPPNAVTYCTIIDGYCKSGDLAEAFQLFDEM---KLKGLVPDSFVYTTLVDGCCRLNDVE 752

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS----TY 308
            +   F+   +  C   +  +N L+      G      ++   +  G     G     TY
Sbjct: 753 RAITIFE-TNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTY 811

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            +MI  L K G L+AA +LF  M++ N  P+   + SL++   K GR      V+ E+  
Sbjct: 812 NIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIA 871

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA-----GFRPNFGLFTMIIESHAKS 423
            G  P   MY  +I ++ K G    AL L D+M        G + +      ++   AK 
Sbjct: 872 AGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKV 931

Query: 424 GKLDIAMSIFTDMERAGFLPTPST 447
           G++++A  +  +M R  ++P  ST
Sbjct: 932 GEMEVAEKVVENMVRLKYIPDSST 955


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 160/349 (45%), Gaps = 14/349 (4%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H++ ALKV++     L L      Q  + P    Y  + + L+++ + D    + ++MV 
Sbjct: 317 HVSHALKVMD-----LML------QEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV- 364

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
              +  +   + +N +I  L+  ++LE +    +++       D  ++N+L+      G 
Sbjct: 365 --DRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGD 422

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           P+    ++E M+   C+ D  TY ++I  L   G+L  A+ L  EM+      S   + +
Sbjct: 423 PHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNT 482

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           ++D++ K  R++ + +V+ +M   G   SA  + +LI+   KA ++D A  L ++M   G
Sbjct: 483 IIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEG 542

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +PN   +  I+  + K G +  A  I   M   GF     TY  L+     +G+   A+
Sbjct: 543 LQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVAL 602

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           KL   M   G+RP    Y  ++  L +R  +  A  +  EM  +G   D
Sbjct: 603 KLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPD 651



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 153/361 (42%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN  +  L +   +  +      +L      D  +YN ++      G   +A  I   M
Sbjct: 304 TYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 363

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D +T+  +I +L+   RL+ A+ L +E+  +   P    F  L++++ K G  
Sbjct: 364 VDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 423

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
              ++++ EM+  G  P    Y  LI+     GKL  AL L +EM   G   +   +  I
Sbjct: 424 HLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTI 483

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I++  K  +++ A  +F  M+  G   +  T++ L++    + ++D A +L   M   GL
Sbjct: 484 IDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGL 543

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +P   TY ++LT   K+  +  AA IL  M   G+ +DV     L+  + K G    AL+
Sbjct: 544 QPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALK 603

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            LR M   GIR        + +S  +      A  L     E     D + Y  V   L 
Sbjct: 604 LLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLC 663

Query: 596 R 596
           R
Sbjct: 664 R 664



 Score =  102 bits (255), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 90/432 (20%), Positives = 179/432 (41%), Gaps = 9/432 (2%)

Query: 170 ALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
           AL+  +D + +L +   A  +  + P    Y  +   L  +  FD M  L  EM  +  +
Sbjct: 62  ALREQSDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQ 121

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC---KIDTQSYNVLMTLFLNKGLP 286
               +  ++   ++  A+  + + +       LD+D    + DT  +N L+ + + +G  
Sbjct: 122 VRAVVVRSF---VESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLV-EGSK 177

Query: 287 YKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
            K  E +Y  M       D  T   +I +L ++ ++  A+ + +EM      P    F +
Sbjct: 178 LKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTT 237

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+    + G ++ +++V  +M   G  P+      LI  Y K G+++ AL    +    G
Sbjct: 238 LMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADG 297

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
           F P+   +   +    ++G +  A+ +   M + G  P   TY+ ++   + +G++D A 
Sbjct: 298 FEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAK 357

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VY 524
            + N M   G  P  +T+  L+  L+ +  ++ A  +  E+   G S DV   ++L+   
Sbjct: 358 GIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINAL 417

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
            K G     +R    M SSG   +      L +         +A  LL     +      
Sbjct: 418 CKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRST 477

Query: 585 VLYTSVLAHLVR 596
           V Y +++  L +
Sbjct: 478 VTYNTIIDALCK 489



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 151/335 (45%), Gaps = 1/335 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I    K  ++E +    ++ +    + D  +YN  +      G    A ++ + M +
Sbjct: 271 NVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQ 330

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY  +I  L+K+G LD A  +  +M +R   P    F +L+ ++    RL+ 
Sbjct: 331 EGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEE 390

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++ +  E+   G  P    +  LI +  K G     +RL++EM+ +G  P+   + ++I+
Sbjct: 391 ALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILID 450

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
                GKL  A+ +  +ME  G   +  TY+ +++      +++ A ++++ M + G+  
Sbjct: 451 HLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISR 510

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWL 537
              T+  L+  L K K +D A +++ +M   G    +++ + +L  Y K G++  A   L
Sbjct: 511 SAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADIL 570

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
             M ++G   +      L     K    + A  LL
Sbjct: 571 ETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLL 605



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 95/468 (20%), Positives = 192/468 (41%), Gaps = 18/468 (3%)

Query: 144 RWKWGPE-----LETQLDKLQFVPKMV---HITQALKVINDSDTSLSLFRWAKRQSWYVP 195
           R +  PE     L + L +  F P       I Q L      D    L R  +R+     
Sbjct: 64  REQSDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRRE----- 118

Query: 196 GDECYVMLFDVLNES----RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251
           G +   ++     ES    R FD  + L    + + +    +    +N ++  L +  KL
Sbjct: 119 GHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKL 178

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           ++    + ++     + D  + N L+           A  + E M     + D +T+  +
Sbjct: 179 KLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTL 238

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           +    + G ++AA+++  +M E    P+      L++   K GR++ ++    +    G 
Sbjct: 239 MQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGF 298

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P    Y + +    + G +  AL++ D M   G  P+   +  +I   +K+G+LD A  
Sbjct: 299 EPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKG 358

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           I   M   G LP  +T++ L+   +S  +++ A+ L   +T  GL P + T+  L+  L 
Sbjct: 359 IVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALC 418

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNF 550
           K     +  ++  EMK+ G + D    ++L+ ++   G + +AL  L  M S+G   +  
Sbjct: 419 KVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTV 478

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
               + ++  K    E A+ + +           V + +++  L + +
Sbjct: 479 TYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAK 526



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 97/465 (20%), Positives = 179/465 (38%), Gaps = 73/465 (15%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
           S  + ++ +L +    +AA+++      R +F PS  ++  +V  +G AG  D    +  
Sbjct: 54  SDQDRLLAALREQSDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVR 113

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           EM+  GH+  A +  S +ESYA+  + D A+                             
Sbjct: 114 EMRREGHQVRAVVVRSFVESYARLRRFDDAV----------------------------- 144

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
             D+ ++   D +  G       ++ LL +     ++     +YN MT  G++P + T  
Sbjct: 145 --DLVLNQL-DNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLN 201

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSS 543
            L+  L +   V  A  +L EM + G + D +    LM  +I++GS++ ALR    M  +
Sbjct: 202 TLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEA 261

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
           G       V  L     K    E A   ++  +    + D V Y + +  L  CQ+    
Sbjct: 262 GCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGL--CQN---- 315

Query: 604 RHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLL 663
                      H +HA               V+  + +  H  D         +  N ++
Sbjct: 316 ----------GHVSHAL-------------KVMDLMLQEGHDPDV--------FTYNTVI 344

Query: 664 NYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRF 723
           N L   G+++ A+ +     +    P    F+  I  +L  +N    A  +A   T+   
Sbjct: 345 NCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIV-ALSSQNRLEEALDLARELTVKGL 403

Query: 724 RKRMLYYGVVPRRIKLVTGPTLKI-VIAQMLSSVESPFEVSKVVL 767
              +  + ++   +  V  P L I +  +M SS  +P EV+  +L
Sbjct: 404 SPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNIL 448


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 177/392 (45%), Gaps = 6/392 (1%)

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
           L  ++ +  ++SLF +       NGI+      + +I        + +++  F  +L   
Sbjct: 67  LVNNKHYPTVISLFKQF----EPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRG 122

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
              +  + N L+     +G   KA   ++ +      LD  +Y  +I  L K+G   A  
Sbjct: 123 FHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVA 182

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +L ++++  + +P   ++ ++++S+ K   L  +  VY EM   G  P    Y +LI  +
Sbjct: 183 RLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGF 242

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
              G L  A  L +EM++    PN   F ++I++ +K GK+  A  +   M +A   P  
Sbjct: 243 CIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDV 302

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ L++ +    +V  A  ++ SM   G+ P +  YT ++  L K K+VD A  +  E
Sbjct: 303 FTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEE 362

Query: 506 MKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           MK      D+   + L+  + K+  ++ A+   + M   GI+ + +    L +   K+  
Sbjct: 363 MKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGR 422

Query: 565 YESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            E AK + +  +     +++  YT ++  L +
Sbjct: 423 LEDAKEIFQRLLAKGYHLNVHAYTVLINRLCK 454



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 144/326 (44%), Gaps = 5/326 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L K  + +      +K+     K D   YN ++       L   A ++Y  M
Sbjct: 164 SYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEM 223

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I      G L  A  L  EMK +N  P+   F  L+D++ K G++
Sbjct: 224 IVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKM 283

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  +   M     +P    Y SLI+ Y    ++  A  ++  M   G  P+   +T +
Sbjct: 284 KEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNM 343

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+  +D AMS+F +M+    +P   TY+ L++    +  ++ A+ L   M   G+
Sbjct: 344 INGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGI 403

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +P + +YT LL  L K   ++ A +I   +   GY ++V A  VL+  + K G  D AL 
Sbjct: 404 QPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALD 463

Query: 536 WLRFMGSSGIR----TNNFIVRQLFE 557
               M   G      T + I+R LFE
Sbjct: 464 LKSKMEDKGCMPDAVTFDIIIRALFE 489



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 5/260 (1%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           SL +EM     KN       +N +I  L+K  K++ +      ++ +  K D  +YN L+
Sbjct: 253 SLLNEM---KLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLI 309

Query: 278 T-LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
              FL   + +  +  Y   ++G  + D   Y  MI  L K+  +D A+ LF+EMK +N 
Sbjct: 310 DGYFLVDEVKHAKYVFYSMAQRG-VTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNM 368

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + SL+D + K   L+ ++ +   M+  G +P    Y  L++   K+G+L+ A  
Sbjct: 369 IPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKE 428

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++  +   G+  N   +T++I    K+G  D A+ + + ME  G +P   T+  ++    
Sbjct: 429 IFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALF 488

Query: 457 SSGQVDSAMKLYNSMTSAGL 476
              + D A K+   M + GL
Sbjct: 489 EKDENDKAEKILREMIARGL 508



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 129/308 (41%), Gaps = 35/308 (11%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  L K   L  +   + +++      D  +Y  L+  F   G   +AF +   M+
Sbjct: 200 YNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMK 259

Query: 298 KGECSLDGSTYELMIPSLAKSGRLD-----------AAIK-------------------- 326
               + +  T+ ++I +L+K G++            A IK                    
Sbjct: 260 LKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVK 319

Query: 327 ----LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
               +F  M +R   P    + ++++ + K   +D +M ++ EM+     P    Y SLI
Sbjct: 320 HAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLI 379

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           +   K   L+ A+ L   M+  G +P+   +T++++   KSG+L+ A  IF  +   G+ 
Sbjct: 380 DGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYH 439

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
                Y+ L+     +G  D A+ L + M   G  P   T+  ++  L ++   D A KI
Sbjct: 440 LNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKI 499

Query: 503 LLEMKTMG 510
           L EM   G
Sbjct: 500 LREMIARG 507



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 156/386 (40%), Gaps = 3/386 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N ++  L            FK+   +    D  + ++L+  F ++     AF ++ ++ 
Sbjct: 60  FNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANIL 119

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K     +  T   +I  L   G +  A+    ++  + F+     + +L++ + K G   
Sbjct: 120 KRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETK 179

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              ++  +++G   +P   MY ++I S  K   L  A  ++ EM + G  P+   +T +I
Sbjct: 180 AVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLI 239

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                 G L  A S+  +M+     P   T++ L++  +  G++  A  L   M  A ++
Sbjct: 240 HGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIK 299

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRW 536
           P + TY +L+        V  A  +   M   G + DV   ++++    K   VD A+  
Sbjct: 300 PDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSL 359

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              M    +  +      L +   KN   E A  L +   E   + D+  YT +L  L +
Sbjct: 360 FEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCK 419

Query: 597 CQDEQNERHLMAILSATKH--KAHAF 620
               ++ + +   L A  +    HA+
Sbjct: 420 SGRLEDAKEIFQRLLAKGYHLNVHAY 445



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 92/206 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I      D+++ +   F  +       D Q Y  ++       +  +A  ++E M
Sbjct: 304 TYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEM 363

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +      D  TY  +I  L K+  L+ AI L + MKE+  +P    +  L+D + K+GRL
Sbjct: 364 KHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRL 423

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + + +++  +   G+  +   Y  LI    KAG  D AL L  +M   G  P+   F +I
Sbjct: 424 EDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDII 483

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFL 442
           I +  +  + D A  I  +M   G L
Sbjct: 484 IRALFEKDENDKAEKILREMIARGLL 509



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 3/185 (1%)

Query: 186 WAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245
           ++  Q    P  +CY  + + L +++  D  +SLF+EM H   KN I     YN +I  L
Sbjct: 326 YSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKH---KNMIPDIVTYNSLIDGL 382

Query: 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
            K   LE +    K++ +   + D  SY +L+      G    A EI++ +      L+ 
Sbjct: 383 CKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNV 442

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
             Y ++I  L K+G  D A+ L  +M+++   P    F  ++ ++ +    D + K+  E
Sbjct: 443 HAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILRE 502

Query: 366 MQGCG 370
           M   G
Sbjct: 503 MIARG 507


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 202/450 (44%), Gaps = 18/450 (4%)

Query: 112 VEPGFD-DHVMVGGIKKPFLNASAVAKIVEVVNRW-KWG-PELETQLDKLQFVPKMVHIT 168
           V  G++ D ++   + K F     + K V V+    K+G P++      +    KM  I 
Sbjct: 116 VRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRID 175

Query: 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS 228
            A +V++             R   + P    Y ++   L      D  L + ++++ D+ 
Sbjct: 176 DATRVLD-----------RMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           +  +     Y  +I+       ++ +     ++L    K D  +YN ++     +G+  +
Sbjct: 225 QPTVI---TYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDR 281

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           AFE+  ++E   C  D  +Y +++ +L   G+ +   KL  +M      P+   ++ L+ 
Sbjct: 282 AFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILIT 341

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
           ++ + G+++ +M +   M+  G  P A  Y  LI ++ + G+LD A+   + M   G  P
Sbjct: 342 TLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 401

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +   +  ++ +  K+GK D A+ IF  +   G  P  S+Y+ +     SSG    A+ + 
Sbjct: 402 DIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMI 461

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD-VLMVYIKD 527
             M S G+ P   TY ++++ L +  +VD A ++L++M++  +   V   + VL+ + K 
Sbjct: 462 LEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKA 521

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
             ++ A+  L  M  +G R N      L E
Sbjct: 522 HRIEDAINVLESMVGNGCRPNETTYTVLIE 551



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 151/330 (45%), Gaps = 5/330 (1%)

Query: 280 FLNKGLPYKAFEIYESMEK-GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
           F  + +P KA  + E +EK G+   D   Y  +I    K  R+D A ++   M+ ++F P
Sbjct: 135 FTLRNIP-KAVRVMEILEKFGQ--PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSP 191

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               +  ++ S+   G+LD ++KV  ++     +P+   Y  LIE+    G +D AL+L 
Sbjct: 192 DTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLM 251

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           DEM   G +P+   +  II    K G +D A  +  ++E  G  P   +Y+ LL    + 
Sbjct: 252 DEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQ 311

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G+ +   KL   M S    P + TY+ L+T L +   ++ A  +L  MK  G + D  + 
Sbjct: 312 GKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371

Query: 519 DVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           D L+  + ++G +D A+ +L  M S G   +      +  +  KN   + A  +     E
Sbjct: 372 DPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGE 431

Query: 578 SAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607
                +   Y ++ + L    D+    H++
Sbjct: 432 VGCSPNSSSYNTMFSALWSSGDKIRALHMI 461



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 149/338 (44%), Gaps = 1/338 (0%)

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++L+   + D  +YN L+  F        A  + + M   + S D  TY +MI SL   G
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +LD A+K+  ++   N +P+   +  L+++    G +D ++K+  EM   G +P    Y 
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYN 267

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           ++I    K G +D A  +   + + G  P+   + +++ +    GK +    + T M   
Sbjct: 268 TIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 327

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
              P   TYS L+      G+++ AM L   M   GL P   +Y  L+    +   +DVA
Sbjct: 328 KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA 387

Query: 500 AKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            + L  M + G   D V+ + VL    K+G  D AL     +G  G   N+     +F +
Sbjct: 388 IEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSA 447

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +     A  ++   + +    D + Y S+++ L R
Sbjct: 448 LWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 158/358 (44%), Gaps = 5/358 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AYN +I    K ++++ +     ++   D   DT +YN+++    ++G    A ++   +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C     TY ++I +    G +D A+KL  EM  R  +P    + +++  M K G +
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279

Query: 357 DTSMKVY--MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           D + ++   +E++GC   P    Y  L+ +    GK +   +L  +M      PN   ++
Sbjct: 280 DRAFEMVRNLELKGC--EPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYS 337

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I +  + GK++ AM++   M+  G  P   +Y  L+      G++D A++   +M S 
Sbjct: 338 ILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
           G  P +  Y  +L  L K    D A +I  ++  +G S + S+ + +   +   G    A
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           L  +  M S+GI  +      +     +  + + A  LL           +V Y  VL
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 112/235 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L +  K+E +    K + +     D  SY+ L+  F  +G    A E  E+M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D   Y  ++ +L K+G+ D A+++F ++ E    P+ + + ++  ++  +G  
Sbjct: 395 ISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDK 454

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ + +EM   G  P    Y S+I    + G +D A  L  +MR   F P+   + ++
Sbjct: 455 IRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIV 514

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
           +    K+ +++ A+++   M   G  P  +TY+ L+E    +G    AM+L N +
Sbjct: 515 LLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 97/202 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y+ +I    +  +L+++    + ++   C  D  +YN ++      G   +A EI+  +
Sbjct: 370 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL 429

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  CS + S+Y  M  +L  SG    A+ +  EM      P    + S++  + + G +
Sbjct: 430 GEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMV 489

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++ ++M+ C   PS   Y  ++  + KA +++ A+ + + M   G RPN   +T++
Sbjct: 490 DEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVL 549

Query: 417 IESHAKSGKLDIAMSIFTDMER 438
           IE    +G    AM +  D+ R
Sbjct: 550 IEGIGFAGYRAEAMELANDLVR 571


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 156/387 (40%), Gaps = 39/387 (10%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           +  L + L ++ +F   L LFD+MV    +  +     Y  +I  L K  +   +    K
Sbjct: 164 FTTLINGLCKAGEFAQALELFDDMVARGCQPDVY---TYTTIINGLCKMGETAAAAGLIK 220

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+ +  C+ D  +Y+ L+       L  +A +I+  M+    S    +Y  +I  L    
Sbjct: 221 KMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFS 280

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R   A  +  EM   N  P    F+ L+D   K G +  +  V   M   G  P+   Y 
Sbjct: 281 RWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYN 340

Query: 380 SL-----------------------------------IESYAKAGKLDTALRLWDEMRIA 404
           SL                                   I  Y    ++D A +L++EM   
Sbjct: 341 SLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQ 400

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  PN   +T +I +  + GKL  A  +F DM   G+LP   TYS LLE     G +  A
Sbjct: 401 GLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKA 460

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMV 523
            +L+ +M    L+P L  YT L+  + K   ++ A K+  E+   G   DV   + ++  
Sbjct: 461 FRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIING 520

Query: 524 YIKDGSVDHALRWLRFMGSSGIRTNNF 550
             K+G +D AL   R M   G   N F
Sbjct: 521 LCKEGLLDEALEAFRKMEEDGCPPNEF 547



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 176/400 (44%), Gaps = 6/400 (1%)

Query: 213 FDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           +D ++SL  +M +   S N  +L    N +I        +++ +    KV+    +    
Sbjct: 107 YDAVISLSKQMELAGLSPNTCTL----NILINCFCLMQHVDLGFSVLAKVIKLGLQPTII 162

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++  L+      G   +A E+++ M    C  D  TY  +I  L K G   AA  L ++M
Sbjct: 163 TFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKM 222

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            E   +P    +++L+DS+ K   ++ ++ ++  M+  G  P+   Y SLI+      + 
Sbjct: 223 GEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRW 282

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A  + +EM      P+   F+++I+   K G +  A  +   M   G  P   TY+ L
Sbjct: 283 KEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSL 342

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +  ++   +V  A KL++ M + G +P + +Y+ L+      K +D A ++  EM   G 
Sbjct: 343 MHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGL 402

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           + + VS + ++  + + G +  A    + M ++G   +      L E   K      A  
Sbjct: 403 TPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFR 462

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
           L      +  K +LV+YT ++  + +  +  + R L + L
Sbjct: 463 LFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSEL 502



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 119/243 (48%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN LM  +  +    +A ++++ M    C  D  +Y ++I       R+D A +LF EM
Sbjct: 338 TYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEM 397

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             +   P+   + +L+ +  + G+L  + +++ +M   G+ P    Y  L+E + K G L
Sbjct: 398 IHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYL 457

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A RL+  M+    +PN  ++T++I+S  KSG L+ A  +F+++   G  P    Y+ +
Sbjct: 458 GKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTI 517

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +      G +D A++ +  M   G  P   +Y  ++    + K    A +++ EM+  G+
Sbjct: 518 INGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGF 577

Query: 512 SVD 514
             D
Sbjct: 578 VAD 580



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 142/328 (43%), Gaps = 9/328 (2%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSL 183
           GI    ++ +++ + +   +RWK    +  ++  L  +P +V  +  + +       L  
Sbjct: 261 GISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEA 320

Query: 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGML----SLFDEMVHDSSKNGISLFSAYN 239
               K  +    G E  V+ ++ L         +     LFD M+    K  +  FS Y+
Sbjct: 321 QGVLKTMTEM--GVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDV--FS-YS 375

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I       +++ +   F +++      +T SY  L+  F   G   +A E+++ M   
Sbjct: 376 ILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTN 435

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY +++    K G L  A +LF+ M+    +P+  ++  L+DSM K+G L+ +
Sbjct: 436 GYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHA 495

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            K++ E+   G +P   +Y ++I    K G LD AL  + +M   G  PN   + +II  
Sbjct: 496 RKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRG 555

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPST 447
             +      A+ +  +M   GF+    T
Sbjct: 556 FLQHKDESRAVQLIGEMRDKGFVADEGT 583


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTREHKLWVPFDTCRKVL-EYLMKLKYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G+  + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L+K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L D+M   G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL P 
Sbjct: 327 CCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 387 TGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 146/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFY 130

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPSA  Y +L+  Y + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRL 190

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I   +K  K+D A  +F +M   G +P   T+
Sbjct: 191 GVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTF 250

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ +M  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSR 310

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A    + M    IR ++ +   L     +      
Sbjct: 311 KGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVD 370

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +      D   YT ++    +  D
Sbjct: 371 AEKMLREMLSVGLNPDTGTYTMIINEFCKKGD 402



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 141/311 (45%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V++YL K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 107 FDTCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 166

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 167 AITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKES 226

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 227 KMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYN 286

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  DM R G  P   TY+ L++     G +DSA +    M   
Sbjct: 287 TLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQE 346

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G + D     +++  + K G V   
Sbjct: 347 NIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKG 406

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 407 SKLLKEMQRDG 417


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 165/346 (47%), Gaps = 6/346 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + LF++M+  + K  +  F   N ++  L K  +++ +      ++      +  +YN L
Sbjct: 259 VGLFNQMLLKNIKPDVYTF---NILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSL 315

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +       KA  ++ +M +   + D  +Y +MI  L K+  +D A+ LF+EM  ++ 
Sbjct: 316 MDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSM 375

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   + SL+D + K GR+  +  +  EM   G       Y SL+++  K  ++D A+ 
Sbjct: 376 APNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAIT 435

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +++  G +PN   +T++++   K+G+L  A +++ D+   G+      Y+ ++    
Sbjct: 436 LITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLC 495

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV--D 514
             G  D A+ L + M   G  P   TY  L+  L +    D A K+L EM   G +V  +
Sbjct: 496 KEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQGSAVGSN 555

Query: 515 VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +S++ +L VY         + W  F G + +  + F ++   ++CM
Sbjct: 556 ISSNSMLCVYQAAPLASFGVFWFIF-GLASLGLDAFKIQLPEQACM 600



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 159/369 (43%), Gaps = 3/369 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L K  +   +    +K+     + +   YN ++       L   A ++   M
Sbjct: 171 SYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEM 230

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I      GRL  A+ LF +M  +N +P    F  LVD + K G +
Sbjct: 231 IVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEM 290

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  V   M   G   +   Y SL++ Y    + + A  +++ M   G  P+   ++++
Sbjct: 291 KKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIM 350

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+  +D A+++F +M      P   TY+ L++     G++  A  L N M + G 
Sbjct: 351 INGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQ 410

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
              + TY++LL  L K   VD A  ++ ++K  G   ++    +L+  + K+G +  A  
Sbjct: 411 PADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQA 470

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
             + +   G   +  +   +     K  L++ A  L+    ++    D V Y +++  L 
Sbjct: 471 VYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALF 530

Query: 596 RCQDEQNER 604
             ++++N++
Sbjct: 531 --ENDKNDK 537



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/429 (19%), Positives = 184/429 (42%), Gaps = 41/429 (9%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           + D  +S F+ ++H   +N +     +N+++  L K +    +    K++     + D  
Sbjct: 43  NVDDAVSSFNHILH--MRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLF 100

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++N+L+  F + G    AF +   + K     D  T   +I  L  +G++  A+    ++
Sbjct: 101 TFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDV 160

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK---- 387
             + F      + +L++ + K G    +++V  ++ G   +P+  MY ++I+S  K    
Sbjct: 161 IAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLV 220

Query: 388 -------------------------------AGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
                                           G+L  A+ L+++M +   +P+   F ++
Sbjct: 221 IHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNIL 280

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K G++  A ++   M + G      TY+ L++ +    Q + A  ++N+M   G+
Sbjct: 281 VDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGV 340

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P + +Y+ ++  L K K+VD A  +  EM +   + + V+ + ++   +K G +  A  
Sbjct: 341 TPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWD 400

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            +  M + G   +      L ++  KN   + A  L+    +   + ++  YT ++  L 
Sbjct: 401 LVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLC 460

Query: 596 ---RCQDEQ 601
              R +D Q
Sbjct: 461 KNGRLKDAQ 469


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 151/322 (46%), Gaps = 13/322 (4%)

Query: 197 DECY--VMLFDVLNESRDFDG----MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           D C   V+ + +L E+   +G     + L +EM+   ++  +     YN +I+ + K   
Sbjct: 211 DNCMPTVITYTILIEATIVEGGINEAMKLLEEML---ARGLLPDMYTYNAIIRGMCKEGM 267

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           +E +      +    C+ D  SYN+L+  FLN+G   +  ++   M    C  +  TY +
Sbjct: 268 VERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSI 327

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV--YMEMQG 368
           +I SL + GR+D AI + + M E+   P    +  L+ ++ K GRLD ++ +  YM   G
Sbjct: 328 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNG 387

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           C   P    Y +++ +  K G  + AL +++++R  G  PN   +  +I +    G    
Sbjct: 388 C--LPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSR 445

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+ +   M   G  P   TY+ L+      G V+ A+ L + M  +G RP + +Y  +L 
Sbjct: 446 ALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLL 505

Query: 489 LLAKRKLVDVAAKILLEMKTMG 510
            L K + +D A  +  EM   G
Sbjct: 506 GLCKVRRIDDAIGMFAEMIEKG 527



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 160/357 (44%), Gaps = 4/357 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           ++P    Y ++   L   R     L++ D+++ D   N +     Y  +I+       + 
Sbjct: 178 FLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLD---NCMPTVITYTILIEATIVEGGIN 234

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +    +++L      D  +YN ++     +G+  +A E+  S+    C  D  +Y +++
Sbjct: 235 EAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILL 294

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            +    G+ D   KL  EM  R   P+   ++ L+ S+ + GR+D ++ V   M      
Sbjct: 295 RAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELT 354

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y  LI +  K G+LD A+ + D M   G  P+   +  I+ +  K+G  + A+ I
Sbjct: 355 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 414

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  +   G  P  S+Y+ ++    S G    A+ +  +M S G+ P   TY +L++ L +
Sbjct: 415 FNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCR 474

Query: 493 RKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
             LV+ A  +L +M+  G+   V S + VL+   K   +D A+     M   G R N
Sbjct: 475 DGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPN 531



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 153/373 (41%), Gaps = 36/373 (9%)

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK-- 317
           ++L+S  + D  +YN +++ F        A ++   M+      D  TY +MI SL    
Sbjct: 137 EILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 196

Query: 318 ---------------------------------SGRLDAAIKLFQEMKERNFRPSFNIFA 344
                                             G ++ A+KL +EM  R   P    + 
Sbjct: 197 KLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYN 256

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +++  M K G ++ + ++   +   G  P    Y  L+ ++   GK D   +L  EM   
Sbjct: 257 AIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 316

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  PN   ++++I S  + G++D A+S+   M      P   +Y  L+      G++D A
Sbjct: 317 GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 376

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
           + + + M S G  P +  Y  +L  L K    + A +I  +++ MG   +VS+ + ++  
Sbjct: 377 IGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISA 436

Query: 525 I-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           +   G    AL  +  M S GI  +      L     ++ L E A  LL+   +S  +  
Sbjct: 437 LWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPT 496

Query: 584 LVLYTSVLAHLVR 596
           ++ Y  VL  L +
Sbjct: 497 VISYNIVLLGLCK 509



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 130/282 (46%), Gaps = 2/282 (0%)

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            K+G+ + ++   + +  + + P   +   L+        ++ + +V ME+      P  
Sbjct: 89  CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRV-MEILESHTEPDV 147

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y ++I  + K  +++ A ++ + M+  GF P+   + ++I S     KL +A+++   
Sbjct: 148 FAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQ 207

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           +     +PT  TY+ L+E     G ++ AMKL   M + GL P + TY A++  + K  +
Sbjct: 208 LLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGM 267

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           V+ AA+++  + + G   DV + ++L+  ++  G  D   + +  M S G   N      
Sbjct: 268 VERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSI 327

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  S  +    + A  +L+  +E     D   Y  +++ L +
Sbjct: 328 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 369



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 115/237 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L +  +++ +    K +++ +   DT SY+ L++    +G    A  I + M
Sbjct: 324 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 383

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D   Y  ++ +L K+G  + A+++F +++     P+ + + +++ ++   G  
Sbjct: 384 ISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDR 443

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ +   M   G  P    Y SLI    + G ++ A+ L D+M  +GFRP    + ++
Sbjct: 444 SRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIV 503

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
           +    K  ++D A+ +F +M   G  P  +TY  L+E    +G    AM+L NS+ S
Sbjct: 504 LLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS 560


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 153/325 (47%), Gaps = 4/325 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
             L DEM+       + +F+    +I  L K   L  +   F ++++   + +  +   L
Sbjct: 240 FGLVDEMIRRGLDVSVYVFTV---LIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTAL 296

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +  KG    A E+++++ +     D  TY + I    K GR+  A+++F EM     
Sbjct: 297 MGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGV 356

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   + SL+D + KAG +  + ++   M   G  P       L++   K+ +LD A+ 
Sbjct: 357 VPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAIL 416

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L++++  +G  P+   +T++I     S ++  AM++  DM     +P   TYSCL++   
Sbjct: 417 LFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLC 476

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            SG++ +A +L N M   G  P   TY+ LL  L K++ +D A  +  +M   G   DV 
Sbjct: 477 RSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVM 536

Query: 517 ASDVLM-VYIKDGSVDHALRWLRFM 540
              +++  Y K   +D A+   R M
Sbjct: 537 CYTIMIDGYCKSERIDEAINLFREM 561



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 157/352 (44%), Gaps = 10/352 (2%)

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           +  S+  F K+L     +DT + N ++      G   KA E ++ +     SL+  +Y +
Sbjct: 88  VSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGI 147

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERN--------FRPSFNIFASLVDSMGKAGRLDTSMKV 362
           +I  L ++GR++ A+ L + +++           + +  +++ ++D + + G +D   + 
Sbjct: 148 LINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEF 207

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           Y EM G G  P+   Y SLI      GK      L DEM   G   +  +FT++I+   K
Sbjct: 208 YNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCK 267

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           +G L  A  +F +M   G+ P   T + L+  +   G VD A +L++++   G +  + T
Sbjct: 268 NGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWT 327

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMG 541
           Y   +    K   V  A ++  EM   G   ++   + L+    K G V  A   ++ M 
Sbjct: 328 YNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMH 387

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
            SG+  +      L +   K+   + A  L    VES    D+  YT +L H
Sbjct: 388 RSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYT-ILIH 438



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 152/352 (43%), Gaps = 1/352 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ VI  L +   ++  +  + +++ +    +  +Y  L+      G   + F + + M 
Sbjct: 188 YSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMI 247

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +    +    + ++I  L K+G L  A ++F EM  R + P+     +L+      G +D
Sbjct: 248 RRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVD 307

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + +++  +   G +     Y   I  Y K G++  A+R++DEM   G  PN   +  +I
Sbjct: 308 MARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLI 367

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K+G++  A  I   M R+G  P   T   LL+    S ++D A+ L+N +  +GL 
Sbjct: 368 DCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLT 427

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P + +YT L+      + +  A  +L +M        +     L+    + G + +A R 
Sbjct: 428 PDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRL 487

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
           L  M   G   +      L ++  K    + A  L    ++   + D++ YT
Sbjct: 488 LNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYT 539



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 122/269 (45%), Gaps = 3/269 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           +FDEM  +     I     YN +I  L KA ++  ++   K +  S    D  +  +L+ 
Sbjct: 347 VFDEMCREGVVPNIV---TYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLD 403

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
                    +A  ++  + +   + D  +Y ++I     S R+  A+ L ++M  +N  P
Sbjct: 404 GLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVP 463

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               ++ L+D + ++GR+  + ++  EM   G  P    Y  L+++  K   LD A+ L+
Sbjct: 464 HIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLF 523

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           ++M   G  P+   +T++I+ + KS ++D A+++F +M     +P   TY+ L      S
Sbjct: 524 NQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKS 583

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           G      K  N +      P +  Y A L
Sbjct: 584 GSNSYEWKFVNVIRDINPPPRVLKYLAAL 612



 Score = 44.7 bits (104), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 58/330 (17%), Positives = 114/330 (34%), Gaps = 45/330 (13%)

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD-SMGKAGRLDTSMKVYMEMQGCG 370
           +  L K+ +   AI LF + +  NF     I  +++       G +  S  ++ ++   G
Sbjct: 43  LTCLMKTNQHSTAIALFNQNEYNNFITPCIITLTIIITCFFHLGHVSFSFSIFGKILKRG 102

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF------------------------ 406
           +        ++++     G +  AL   DE+   GF                        
Sbjct: 103 YGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEAV 162

Query: 407 -------------------RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
                              + N  +++++I+   ++G +D     + +M   G  P   T
Sbjct: 163 NLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFT 222

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y  L+      G+      L + M   GL   +  +T L+  L K  ++  A ++  EM 
Sbjct: 223 YGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMV 282

Query: 508 TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             GY  ++     LM  Y   G+VD A      +G  G + + +          K     
Sbjct: 283 NRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVR 342

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            A  + +         ++V Y S++  L +
Sbjct: 343 DAVRVFDEMCREGVVPNIVTYNSLIDCLCK 372


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 153/320 (47%), Gaps = 3/320 (0%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +L ++M++      + +FS    V+  L K  K+  ++     ++    + +  +YN LM
Sbjct: 263 TLLNQMINSKIMPDVVIFST---VVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALM 319

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                +    +A +++++M     + +  +Y  +I    K  R+D A  LF+EM ++   
Sbjct: 320 DGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELI 379

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P+   + +L+  +   GRL  ++ ++ EM   G  P    Y  L++   K   LD A+ L
Sbjct: 380 PNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMAL 439

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
              +  +   P+  ++T++I+   ++G+L+ A  IF+++   G  P   TY+ ++     
Sbjct: 440 LKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCR 499

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            G +D A KL+  M   G  P   TY  +   L + K    A ++L EM   G+S DVS 
Sbjct: 500 RGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVST 559

Query: 518 SDVLMVYIKDGSVDHALRWL 537
           + +L+  + D  +D +++ +
Sbjct: 560 TTLLVEMLCDDKLDQSVKQI 579



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 169/405 (41%), Gaps = 9/405 (2%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L LFD+M+ +  +  +     Y  +I  L K      +    + +   +C+ D   Y  +
Sbjct: 157 LHLFDKMIGEGFQPNVV---TYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSI 213

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +          +AF ++  M     S D  TY  +I SL           L  +M     
Sbjct: 214 IDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKI 273

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P   IF+++VD++ K G++  +  V   M   G  P+   Y +L++ +    ++D A++
Sbjct: 274 MPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVK 333

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++D M   G+ PN   +  +I  + K  ++D A  +F +M +   +P   TY+ L+    
Sbjct: 334 VFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLC 393

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G++  A+ L++ M + G  P L+TY  LL  L K+  +D A  +L  ++      D+ 
Sbjct: 394 HVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQ 453

Query: 517 ASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
              +++    + G ++ A      + S G+R N      +     +  L + A  L    
Sbjct: 454 IYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEM 513

Query: 576 VESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF 620
             +    D   Y ++   L+     QN+  L AI    +  A  F
Sbjct: 514 DGNGCSPDGCTYNTITQGLL-----QNKEALRAIQLLQEMLARGF 553



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 109/234 (46%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           SYN L+  +       KA  ++E M + E   +  TY  ++  L   GRL  AI LF EM
Sbjct: 349 SYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEM 408

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
                 P    +  L+D + K   LD +M +   ++G    P   +Y  +I+   +AG+L
Sbjct: 409 VAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGEL 468

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A  ++  +   G RPN   +T++I    + G LD A  +F +M+  G  P   TY+ +
Sbjct: 469 EAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTI 528

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            +    + +   A++L   M + G    +ST T L+ +L   KL     +IL E
Sbjct: 529 TQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQILSE 582



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 159/385 (41%), Gaps = 4/385 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            D  LS F+ M+H         F   NR++  +AK  +    +    ++       D  +
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDF---NRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYT 104

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
            N+L+  F +   P  AF +   + K     D +T+  +I  L   G++  A+ LF +M 
Sbjct: 105 LNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMI 164

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
              F+P+   + +L++ + K G  + ++++   M+    +P   +Y S+I+S  K  ++ 
Sbjct: 165 GEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVT 224

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A  L+ +M   G  P+   +T +I S     +     ++   M  +  +P    +S ++
Sbjct: 225 EAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVV 284

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           +     G++  A  + + M   G+ P + TY AL+     +  +D A K+   M   GY+
Sbjct: 285 DALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYA 344

Query: 513 VDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            +V + + L+  Y K   +D A      M    +  N      L          + A  L
Sbjct: 345 PNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIAL 404

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
               V      DL  Y  +L +L +
Sbjct: 405 FHEMVAHGQIPDLATYRILLDYLCK 429



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 148/367 (40%), Gaps = 4/367 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++NR        + L+ +   F ++L       T  +N L+T           F +   M
Sbjct: 34  SHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQM 93

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +      D  T  ++I S     R   A  +  ++ +   +P    F +L+  +   G++
Sbjct: 94  DSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKI 153

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ ++ +M G G +P+   Y +LI    K G  + A+RL   M     +P+  ++T I
Sbjct: 154 GDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSI 213

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+S  K  ++  A ++F+ M   G  P   TY+ L+    +  +      L N M ++ +
Sbjct: 214 IDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKI 273

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P +  ++ ++  L K   +  A  ++  M   G   +V   + LM  +     +D A++
Sbjct: 274 MPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVK 333

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV---LA 592
               M  +G   N      L     K    + A  L E   +     + V Y ++   L 
Sbjct: 334 VFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLC 393

Query: 593 HLVRCQD 599
           H+ R QD
Sbjct: 394 HVGRLQD 400


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 8/282 (2%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A E +  M +     D   Y  +I    K G + AA K F EM  R+  P    + +++
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
               + G +  + K++ EM   G  P +  +  LI  Y KAG +  A R+ + M  AG  
Sbjct: 394 SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 453

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           PN   +T +I+   K G LD A  +  +M + G  P   TY+ ++     SG ++ A+KL
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 513

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIK 526
                +AGL     TYT L+    K   +D A +IL EM   G    +   +VLM  +  
Sbjct: 514 VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 573

Query: 527 DGSVDHALRWLRFMGSSGIRTN----NFIVRQLFESCMKNAL 564
            G ++   + L +M + GI  N    N +V+Q    C++N L
Sbjct: 574 HGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY---CIRNNL 612



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 130/285 (45%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I  L +  KL  +   F +++      DT  Y  L+  F  +G    A + +  M 
Sbjct: 319 YGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH 378

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
             + + D  TY  +I    + G +  A KLF EM  +   P    F  L++   KAG + 
Sbjct: 379 SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMK 438

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + +V+  M   G  P+   Y +LI+   K G LD+A  L  EM   G +PN   +  I+
Sbjct: 439 DAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIV 498

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               KSG ++ A+ +  + E AG      TY+ L++ +  SG++D A ++   M   GL+
Sbjct: 499 NGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ 558

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           P + T+  L+       +++   K+L  M   G + + +  + L+
Sbjct: 559 PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 3/329 (0%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           +P    Y  L D   +  D       F EM    S++       Y  +I    +   +  
Sbjct: 348 LPDTVVYTTLIDGFCKRGDIRAASKFFYEM---HSRDITPDVLTYTAIISGFCQIGDMVE 404

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F ++     + D+ ++  L+  +   G    AF ++  M +  CS +  TY  +I 
Sbjct: 405 AGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID 464

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K G LD+A +L  EM +   +P+   + S+V+ + K+G ++ ++K+  E +  G   
Sbjct: 465 GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA 524

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
               Y +L+++Y K+G++D A  +  EM   G +P    F +++      G L+    + 
Sbjct: 525 DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 584

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M   G  P  +T++ L++ +     + +A  +Y  M S G+ P   TY  L+    K 
Sbjct: 585 NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKA 644

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           + +  A  +  EMK  G+SV VS   VL+
Sbjct: 645 RNMKEAWFLFQEMKGKGFSVSVSTYSVLI 673



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 153/338 (45%), Gaps = 1/338 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           ++YN VI ++ +  +++ ++     +       D  SY+ ++  +   G   K +++ E 
Sbjct: 247 ASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 306

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M++     +   Y  +I  L +  +L  A + F EM  +   P   ++ +L+D   K G 
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  + K + EM      P    Y ++I  + + G +  A +L+ EM   G  P+   FT 
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I  + K+G +  A  +   M +AG  P   TY+ L++     G +DSA +L + M   G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           L+P + TY +++  L K   ++ A K++ E +  G + D      LM  Y K G +D A 
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
             L+ M   G++        L      + + E  + LL
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 584



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 123/278 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +  +I    KA  ++ ++     ++ + C  +  +Y  L+     +G    A E+   M
Sbjct: 423 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     +  TY  ++  L KSG ++ A+KL  E +          + +L+D+  K+G +
Sbjct: 483 WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEM 542

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++  EM G G +P+   +  L+  +   G L+   +L + M   G  PN   F  +
Sbjct: 543 DKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSL 602

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++ +     L  A +I+ DM   G  P   TY  L++ H  +  +  A  L+  M   G 
Sbjct: 603 VKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGF 662

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +STY+ L+    KRK    A ++  +M+  G + D
Sbjct: 663 SVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/306 (18%), Positives = 127/306 (41%), Gaps = 2/306 (0%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK-AGRLDTSMKV 362
           D   +++    L   G L  A ++F++M       S +     +  + K   +  T++ V
Sbjct: 174 DPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIV 233

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           + E    G   +   Y  +I    + G++  A  L   M + G+ P+   ++ ++  + +
Sbjct: 234 FREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCR 293

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            G+LD    +   M+R G  P    Y  ++ +     ++  A + ++ M   G+ P    
Sbjct: 294 FGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVV 353

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMG 541
           YT L+    KR  +  A+K   EM +   + DV + + ++  + + G +  A +    M 
Sbjct: 354 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 413

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
             G+  ++    +L     K    + A  +    +++    ++V YT+++  L +  D  
Sbjct: 414 CKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD 473

Query: 602 NERHLM 607
           +   L+
Sbjct: 474 SANELL 479



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 42/275 (15%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI--SLFSAYNRVIQYLAK 247
           Q+   P    Y  L D L +  D D      +E++H+  K G+  ++F+ YN ++  L K
Sbjct: 449 QAGCSPNVVTYTTLIDGLCKEGDLDSA----NELLHEMWKIGLQPNIFT-YNSIVNGLCK 503

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM----------- 296
           +  +E +     +   +    DT +Y  LM  +   G   KA EI + M           
Sbjct: 504 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 563

Query: 297 --------------EKGECSLD----------GSTYELMIPSLAKSGRLDAAIKLFQEMK 332
                         E GE  L+           +T+  ++        L AA  ++++M 
Sbjct: 564 FNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMC 623

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
            R   P    + +LV    KA  +  +  ++ EM+G G   S   Y  LI+ + K  K  
Sbjct: 624 SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 683

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
            A  ++D+MR  G   +  +F    ++  K  + D
Sbjct: 684 EAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPD 718



 Score = 42.7 bits (99), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 3/202 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D   +S + D    +  EM+    +  I  F   N ++        LE       
Sbjct: 529 YTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTF---NVLMNGFCLHGMLEDGEKLLN 585

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +L      +  ++N L+  +  +     A  IY+ M       DG TYE ++    K+ 
Sbjct: 586 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKAR 645

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            +  A  LFQEMK + F  S + ++ L+    K  +   + +V+ +M+  G      ++ 
Sbjct: 646 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 705

Query: 380 SLIESYAKAGKLDTALRLWDEM 401
              ++  K  + DT +   DE+
Sbjct: 706 FFSDTKYKGKRPDTIVDPIDEI 727


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/453 (22%), Positives = 191/453 (42%), Gaps = 31/453 (6%)

Query: 150 ELETQLDKLQFVPKMVHITQALK-VINDS--DTSLSLFRWAKRQSWYVPGDECYVMLFDV 206
           EL  Q+     +P        +K ++ND     ++SLF+        +P    Y +L   
Sbjct: 338 ELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSG--IPDAFTYNILIHW 395

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           L + R     L+L+++M    ++ G+           Y+     L + YC     +D   
Sbjct: 396 LCQRRKIREALNLWEKM----NETGVK---------PYIVTYHSLLLCYC-VNGCMDEAV 441

Query: 267 KIDTQ-----------SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
           K+ T+           +Y  LM   +NK    KA+ +   M++   S +  TY  +I  L
Sbjct: 442 KLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGL 501

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
              GR+    ++ +  +   F P+   + S+++   KAG + ++  VY +M   G  P+ 
Sbjct: 502 CVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNI 561

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y S I+ Y K    D AL++ +++R  G RP+   +  +I    + G +  A+ +   
Sbjct: 562 VTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVL 621

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M + G LP  S Y+  +  + +   ++ A++ Y  M   G+    +TYT L+   +K   
Sbjct: 622 MLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGN 681

Query: 496 VDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           V  A K+  EM   G   D ++ + +     ++G +D A + L  M    IR N  +   
Sbjct: 682 VTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNM 741

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
           L    ++N   + A  L +  +E     D   Y
Sbjct: 742 LINGYLRNGKLQEAFRLHDEMLERKIMPDDTTY 774



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/451 (21%), Positives = 192/451 (42%), Gaps = 35/451 (7%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           + D++ +L + R   + + +VP D  +  + DVL +    +  L + DE++    K  + 
Sbjct: 225 LRDANRALLVLR-KMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVV 283

Query: 234 LFS--------------------------------AYNRVIQYLAKADKLEMSYCCFKKV 261
           L +                                 Y  +I+   +    E +Y   +++
Sbjct: 284 LATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQM 343

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
            D      T  +N+++   LN  L   A  +++ M       D  TY ++I  L +  ++
Sbjct: 344 RDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRRKI 402

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             A+ L+++M E   +P    + SL+      G +D ++K+Y EM G G  P+   Y +L
Sbjct: 403 REALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTL 462

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           ++ +      D A  L  EM+  G   N   +  +I      G++     +    E  GF
Sbjct: 463 MKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGF 522

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +PT  TY+ ++     +G + SA  +Y  M + G+ P + TYT+ +    K    D+A K
Sbjct: 523 VPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALK 582

Query: 502 ILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +L +++  G   D++A + L+  + ++G++ HAL+ L  M   G+  N  +         
Sbjct: 583 MLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYK 642

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              + E A    E  ++    +D   YT+++
Sbjct: 643 NLKMMEEALRFYEKMIKEGIDLDTATYTTLI 673



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 186/429 (43%), Gaps = 14/429 (3%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R    +P    + M+   L   + +   +SLF EM    + +GI     YN +I +L + 
Sbjct: 344 RDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEM----ADSGIPDAFTYNILIHWLCQR 399

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K+  +   ++K+ ++  K    +Y+ L+  +   G   +A ++Y  M     + +  TY
Sbjct: 400 RKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTY 459

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++         D A  L  EMK+     +   + +L++ +   GR+    ++    + 
Sbjct: 460 TTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFET 519

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+A  Y S+I  + KAG + +A  ++ +M   G  PN   +T  I+ + K+   D+
Sbjct: 520 EGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDL 579

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+ +  D+   G  P  + Y+ L+      G +  A+++   M   GL P +S Y + +T
Sbjct: 580 ALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFIT 639

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRT 547
                K+++ A +   +M   G  +D +    L+  + KDG+V  AL+    M + G   
Sbjct: 640 GYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIP 699

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV---------LAHLVRCQ 598
           ++     L     +N   + A+ LL+       + ++++Y  +         L    R  
Sbjct: 700 DHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLH 759

Query: 599 DEQNERHLM 607
           DE  ER +M
Sbjct: 760 DEMLERKIM 768



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 23/326 (7%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           FD   +L  EM     +NG+S     YN +I  L    ++       K+           
Sbjct: 472 FDKAYALLAEM----KQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAM 527

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN ++  F+  G+   AF +Y+ M       +  TY   I    K+   D A+K+  ++
Sbjct: 528 TYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDV 587

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           + +  RP    + SL+    + G +  +++V + M   G  P+  +Y S I  Y     +
Sbjct: 588 RCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMM 647

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + ALR +++M   G   +   +T +I+  +K G +  A+ ++++M   G +P   T++ L
Sbjct: 648 EEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTAL 707

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT----------------LLAKRKL 495
                 +G +D A KL + M    +RP +  Y  L+                  + +RK+
Sbjct: 708 THGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKI 767

Query: 496 V--DVAAKILLEMKTMGYSVDVSASD 519
           +  D    IL+ MK++G    + A +
Sbjct: 768 MPDDTTYDILVGMKSLGSDSPIDAEN 793



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 132/327 (40%), Gaps = 35/327 (10%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           LD   +++++ +  K G  D A++LF EM      P   + +  + S+ K    + ++ V
Sbjct: 175 LDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLV 234

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
             +MQ  G  P    + S+++   K G+++ AL + DE+   G + +  L T ++  +  
Sbjct: 235 LRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCL 294

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS- 481
             ++  A+ IF +  R G +PT  TY+ L+      G  + A +L   M   GL P  + 
Sbjct: 295 QREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNE 354

Query: 482 ---------------------------------TYTALLTLLAKRKLVDVAAKILLEMKT 508
                                            TY  L+  L +R+ +  A  +  +M  
Sbjct: 355 FNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNE 414

Query: 509 MGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G     V+   +L+ Y  +G +D A++    M   G   N      L +  +  A ++ 
Sbjct: 415 TGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDK 474

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHL 594
           A  LL    ++    +   Y +++  L
Sbjct: 475 AYALLAEMKQNGVSCNDYTYNTLINGL 501


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +     VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTRENKLCVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A KLF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 387 ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 143/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 71  DIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M     +P   T+
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTF 250

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSM 310

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A    + M    IR ++     L     +      
Sbjct: 311 KGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 371 AEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 139/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 166

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKEN 226

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + K++ EM      P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 227 KMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYN 286

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +D+A +    M   
Sbjct: 287 TLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQE 346

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G   D  + + ++  + K G V   
Sbjct: 347 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKG 406

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 407 SKLLKEMQRDG 417



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 140/319 (43%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I    +SG L  AI+ ++  +E      F+    +++ + K     
Sbjct: 65  KGTQRSDIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLKYFK 124

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A KL++ M    L 
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALV 244

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +     D+   + L+  + K G +  A   
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDL 304

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L + C K    ++A    +  ++   ++D V YT++++ L  
Sbjct: 305 IDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL-- 362

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 363 CQEGRSVDAEKMLREMLSV 381


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 170/395 (43%), Gaps = 3/395 (0%)

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           F  +N+S    G +   +E+V +  ++GI      Y+ ++               F+++ 
Sbjct: 377 FAKINDSHQ-SGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 435

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
           +   K    SY  L+ L++  G   KA  I + ME      +  TY ++I          
Sbjct: 436 ECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFA 495

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A  +F+EM     +P   I+  L+++  K G +D ++ +  +MQ    +PS   +  +I
Sbjct: 496 NAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPII 555

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           E YA AG + +AL   D MR +G  P    +  +I    +  K+  A+S+   M  AG  
Sbjct: 556 EGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGIT 615

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P   TY+ ++  +A+SG +  A + +  +  +GL+  +  Y  LL    K   +  A  +
Sbjct: 616 PNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAV 675

Query: 503 LLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             EM       +    ++L+  + + G V  A   ++ M   G+  N         +C K
Sbjct: 676 TREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCK 735

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               + A+ ++E  V+   K ++  YT+++    R
Sbjct: 736 AGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 770



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 162/360 (45%), Gaps = 1/360 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  ++    K  K+  +    K++     K + ++Y++L+  F++      AF I+E M
Sbjct: 445 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 504

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     D + Y L+I +  K G +D AI + ++M++   +PS   F  +++    AG +
Sbjct: 505 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDM 564

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
            +++     M+  G  P+   Y +LI    +  K+  A+ + D+M IAG  PN   +T+I
Sbjct: 565 KSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTII 624

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  +A SG +  A   FT ++ +G       Y  LL     SG++ SA+ +   M+   +
Sbjct: 625 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 684

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
                 Y  L+   A+R  V  A  ++ +MK  G   ++ + +  +    K G +  A +
Sbjct: 685 PRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEK 744

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            +  M   G++ N      L +   + +L + A    E    +  K D   Y  ++  L+
Sbjct: 745 VIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLL 804



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 177/405 (43%), Gaps = 22/405 (5%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAK------ADKLEMSYCCFKKVL 262
           +RD  G LS  +EM       G+ L    Y+ +I   AK      +  +E +    +++ 
Sbjct: 345 ARDMRGALSCVEEM----KSEGLELTIVTYSILISGFAKINDSHQSGNMERAEELVREME 400

Query: 263 DSDCKIDTQSYNVLM---TLFLNKGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLAK 317
           +         Y+ +M   T+  N+    K   ++E ++  EC    S  +Y  ++    K
Sbjct: 401 EDGIDAPIDVYHSMMHGYTIIQNEN---KCLVVFERLK--ECGFKPSIISYGCLLNLYVK 455

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G++  A+ + +EM+    + +   ++ L++          +  ++ EM   G +P   +
Sbjct: 456 IGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAI 515

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  LIE++ K G +D A+ + ++M+    +P+   F  IIE +A +G +  A+     M 
Sbjct: 516 YNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMR 575

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           R+G +PT  TY+ L+       +V  A+ + + M+ AG+ P   TYT ++   A    + 
Sbjct: 576 RSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIG 635

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A +   ++K  G  +DV   + L+    K G +  AL   R M    I  N FI   L 
Sbjct: 636 KAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILI 695

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
           +   +      A+ L++   E     ++  YTS +    +  D Q
Sbjct: 696 DGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQ 740



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 145/336 (43%), Gaps = 40/336 (11%)

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSY 255
           ++ Y ML +      DF    ++F+EM+    ++G+    A YN +I+   K   ++ + 
Sbjct: 478 NKTYSMLINGFIHLHDFANAFAIFEEML----RSGLQPDRAIYNLLIEAFCKMGNMDRAI 533

Query: 256 CCFKKV-------------------------------LD----SDCKIDTQSYNVLMTLF 280
           C  +K+                               LD    S C     +YN L+   
Sbjct: 534 CILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGL 593

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
           + K    +A  + + M     + +  TY +++   A SG +  A + F ++KE   +   
Sbjct: 594 VRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 653

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
            I+ +L+ +  K+GR+ +++ V  EM       +  +Y  LI+ +A+ G +  A  L  +
Sbjct: 654 YIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQ 713

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M+  G  PN   +T  I +  K+G +  A  +  +M   G  P   TY+ L++  A    
Sbjct: 714 MKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSL 773

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            D A+K +  M  AGL+P  ++Y  L+T L  R  V
Sbjct: 774 PDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATV 809



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/438 (19%), Positives = 173/438 (39%), Gaps = 92/438 (21%)

Query: 220 FDEMVHDSSKNGISLFSAYNRVIQY---------LAKA--DKLEMSYC-CFKKVLDSDCK 267
           F  +V     N  ++ SA+ R+ +          L K   D L+++Y   FKK+L    +
Sbjct: 238 FRRVVESRPDNWQAVVSAFERIPKLSGVVSAYFPLCKQSLDVLDLTYPFLFKKLLHEPSR 297

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
              + + +++  +  +G  + A   +E+M       +   +  ++ + A +  +  A+  
Sbjct: 298 ---REFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 354

Query: 328 FQEMKERNFRPSFNIFASLVDSMGK------AGRLDTSMKVYMEMQ-------------- 367
            +EMK      +   ++ L+    K      +G ++ + ++  EM+              
Sbjct: 355 VEEMKSEGLELTIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHSM 414

Query: 368 ---------------------GCGHRPSAPMYVSLIESYAKAGKLDTALR---------- 396
                                 CG +PS   Y  L+  Y K GK+  AL           
Sbjct: 415 MHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGI 474

Query: 397 -------------------------LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
                                    +++EM  +G +P+  ++ ++IE+  K G +D A+ 
Sbjct: 475 KHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAIC 534

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           I   M++    P+   +  ++E +A +G + SA+   + M  +G  P + TY AL+  L 
Sbjct: 535 ILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLV 594

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNF 550
           ++  V  A  +L +M   G + +     ++M  Y   G +  A  +   +  SG++ + +
Sbjct: 595 RKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVY 654

Query: 551 IVRQLFESCMKNALYESA 568
           I   L  +C K+   +SA
Sbjct: 655 IYETLLRACCKSGRMQSA 672



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 126/296 (42%), Gaps = 7/296 (2%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           + LMI   AK G    A   F+ M+ R   P+  +F SLV +   A  +  ++    EM+
Sbjct: 300 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 359

Query: 368 GCGHRPSAPMYVSLIESYAK------AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
             G   +   Y  LI  +AK      +G ++ A  L  EM   G      ++  ++  + 
Sbjct: 360 SEGLELTIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYT 419

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
                +  + +F  ++  GF P+  +Y CLL ++   G+V  A+ +   M S G++    
Sbjct: 420 IIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNK 479

Query: 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFM 540
           TY+ L+           A  I  EM   G   D +  ++L+  + K G++D A+  L  M
Sbjct: 480 TYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKM 539

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               ++ +N   R + E        +SA   L+    S     ++ Y +++  LVR
Sbjct: 540 QKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVR 595



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 7/225 (3%)

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           H PS   +  +I  YAK G    A   ++ MR  G  PN  +FT ++ ++A +  +  A+
Sbjct: 293 HEPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGAL 352

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHA------SSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           S   +M+  G   T  TYS L+   A       SG ++ A +L   M   G+   +  Y 
Sbjct: 353 SCVEEMKSEGLELTIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYH 412

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSS 543
           +++      +  +    +   +K  G+    +S   +L +Y+K G V  AL   + M S 
Sbjct: 413 SMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESC 472

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
           GI+ NN     L    +    + +A  + E  + S  + D  +Y 
Sbjct: 473 GIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYN 517


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 151/337 (44%), Gaps = 1/337 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +I   +KA++++ +   F ++       D  +YN+++    ++G    AFE+ + +
Sbjct: 133 SYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDEL 192

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K  C     TY ++I +    GR++ A++LF E+  R  RP    + +++  + K G  
Sbjct: 193 LKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGME 252

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++     +   G  P    Y  L+ S+    + +   RL  +M ++G  PN    +++
Sbjct: 253 DRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSIL 312

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I S  + G++  A+++   M+  G  P   +Y  L+      G++D A++    M S G 
Sbjct: 313 ISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGC 372

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P +  Y  +L  L K    D+A  +  ++  +G    V A + +   +   G+   AL 
Sbjct: 373 LPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALE 432

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
            +  M   GI  +      L     ++ L + A  LL
Sbjct: 433 MISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLL 469



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 148/327 (45%), Gaps = 4/327 (1%)

Query: 276 LMTLFLNKGLPYKAFEIYESMEK-GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           L+  F N     KA  + E +E  G+   D  +Y  MI   +K+ ++D+A ++F  M+ R
Sbjct: 103 LIKGFFNSRNLKKAMRVMEILETYGD--PDVYSYNAMISGFSKANQIDSANQVFDRMRSR 160

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
            F P    +  ++ S+   G+L+ + +V  E+   G +PS   Y  LIE+    G+++ A
Sbjct: 161 GFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEA 220

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           L L+DE+   G RP+   +  II    K G  D A+     +   G  P   +Y+ LL  
Sbjct: 221 LELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRS 280

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
             +  + +   +L   M  +G  P + T++ L++   +   V  A  +L  MK  G + D
Sbjct: 281 FLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPD 340

Query: 515 VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
             + D L+  + K+G +D A+ +L  M S G   +      +  +  K    + A  + E
Sbjct: 341 SYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFE 400

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDE 600
              E      +  Y ++ + L  C ++
Sbjct: 401 KLDEVGCPPTVRAYNTMFSALWSCGNK 427



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 150/335 (44%), Gaps = 3/335 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R   + P    Y ++   L      +    + DE++ D  K  +     Y  +I+     
Sbjct: 158 RSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVI---TYTILIEATILE 214

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            ++  +   F +++    + D  +YN ++     +G+  +A +    +    C+ D  +Y
Sbjct: 215 GRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSY 274

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            +++ S     R +   +L ++M      P+    + L+ S  + GR+  ++ V   M+ 
Sbjct: 275 NILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKE 334

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P +  Y  LI ++ K G+LD A+   ++M   G  P+   +  I+ +  K G  D+
Sbjct: 335 KGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADL 394

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A+ +F  ++  G  PT   Y+ +     S G    A+++ + M   G+ P   TY +L++
Sbjct: 395 ALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLIS 454

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523
            L +  LVD A  +L++M+   +   V + +++++
Sbjct: 455 CLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLL 489



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 7/314 (2%)

Query: 201 VMLFDVLNESRDFDG----MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
           V+ + +L E+   +G     L LFDE+V    +  +     YN +I+ + K    + +  
Sbjct: 201 VITYTILIEATILEGRINEALELFDELVSRGLRPDLY---TYNAIIRGICKEGMEDRALD 257

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
             + +    C  D  SYN+L+  FLNK        + + M    C  +  T+ ++I S  
Sbjct: 258 FVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFC 317

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           + GR+  A+ + + MKE+   P    +  L+ +  K GRLD +++   +M   G  P   
Sbjct: 318 REGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIV 377

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +++ +  K G  D AL +++++   G  P    +  +  +    G    A+ + ++M
Sbjct: 378 NYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEM 437

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            R G  P   TY+ L+      G VD A+ L   M +   +P + ++  +L  + K   V
Sbjct: 438 IRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRV 497

Query: 497 DVAAKILLEMKTMG 510
               ++L+ M   G
Sbjct: 498 FEGIELLITMVEKG 511



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 121/255 (47%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +++      + E      K ++ S C+ +  ++++L++ F  +G   +A  + E M
Sbjct: 273 SYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVM 332

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++   + D  +Y+ +I +  K GRLD AI+  ++M      P    + +++ ++ K G  
Sbjct: 333 KEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCA 392

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++ V+ ++   G  P+   Y ++  +    G    AL +  EM   G  P+   +  +
Sbjct: 393 DLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSL 452

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    + G +D A+ +  DME   F PT  +++ +L     + +V   ++L  +M   G 
Sbjct: 453 ISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGC 512

Query: 477 RPGLSTYTALLTLLA 491
            P  ++Y  L+  +A
Sbjct: 513 LPNETSYVLLIEGIA 527



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 128/282 (45%), Gaps = 4/282 (1%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           ++L   LN+SR  DG   + D ++     N ++    ++ +I    +  ++  +    + 
Sbjct: 276 ILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVT----HSILISSFCREGRVREAVNVLEV 331

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           + +     D+ SY+ L++ F  +G    A E  E M    C  D   Y  ++ +L K G 
Sbjct: 332 MKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGC 391

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
            D A+ +F+++ E    P+   + ++  ++   G    ++++  EM   G  P    Y S
Sbjct: 392 ADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNS 451

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI    + G +D A+ L  +M    F+P    F +++    K+ ++   + +   M   G
Sbjct: 452 LISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKG 511

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            LP  ++Y  L+E  A +G    AM+L NS+   G+  G S+
Sbjct: 512 CLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGVISGDSS 553



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 104/226 (46%), Gaps = 3/226 (1%)

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           L+    +AGK + +L   + +   GF+P+  L T +I+    S  L  AM +   +E  G
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P   +Y+ ++   + + Q+DSA ++++ M S G  P + TY  ++  L  R  +++A 
Sbjct: 128 D-PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAF 186

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           +++ E+   G    V    +L+   I +G ++ AL     + S G+R + +    +    
Sbjct: 187 EVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGI 246

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQNER 604
            K  + + A   +          D+V Y  +L + L + + E  ER
Sbjct: 247 CKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGER 292


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 140/304 (46%), Gaps = 3/304 (0%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R    VP    Y  L D    + + D    + D+M+       +  F+    +++   + 
Sbjct: 374 RSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTI---LVRGFCQM 430

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             L M+   F ++L    K D  +Y   +   L  G P KAF + E M+      D  TY
Sbjct: 431 GNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITY 490

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            ++I  L K G  D A +L Q+M+     P    + S++ +   +G L  + +V+ +M  
Sbjct: 491 NVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLK 550

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  PS   Y  LI SYA  G+LD A + +DEM+  G  PN   +  +I    K   +D+
Sbjct: 551 KGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDV 610

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
           A ++F +ME  G  P   TY+ L+  +++      A+KLY  M    ++P   T++AL+ 
Sbjct: 611 AYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMK 670

Query: 489 LLAK 492
            L+K
Sbjct: 671 HLSK 674



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 126/276 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN +I   ++      +   F ++   +      +YN L+      G    A  + + M
Sbjct: 349 SYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDM 408

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     D  T+ +++    + G L  A +LF EM  R  +P    + + +    K G  
Sbjct: 409 IKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNP 468

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  +  EM+  G  P    Y  LI    K G  D A  L  +MR+ G  P+   +T I
Sbjct: 469 SKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSI 528

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I +H  SG L  A  +F+DM + G  P+  TY+ L+  +A  G++D A K ++ M   G+
Sbjct: 529 IHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGV 588

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
            P + TY AL+  L K  ++DVA  +  EM++ G S
Sbjct: 589 SPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVS 624



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 154/361 (42%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++  L +  ++  +      +++ D   D  SYN L+  +   G   +A  ++  +
Sbjct: 314 TYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSEL 373

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                     TY  +I    ++G LD A  +  +M +    P    F  LV    + G L
Sbjct: 374 RSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNL 433

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + +++ EM   G +P    Y + I    K G    A  + +EM+  GF P+   + ++
Sbjct: 434 PMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVL 493

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K G  D A  +   M   G +P   TY+ ++  H  SG +  A ++++ M   G+
Sbjct: 494 INGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGI 553

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P + TYT L+   A R  +D A K   EM+  G S +V   + L+  + K+  +D A  
Sbjct: 554 HPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYN 613

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M S G+  N +    L         ++ A  L +  ++   K D   +++++ HL 
Sbjct: 614 LFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLS 673

Query: 596 R 596
           +
Sbjct: 674 K 674



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 144/329 (43%), Gaps = 2/329 (0%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C  +  SYNVL+     KG   +A E+ E M      +   TY  +I    K    + A 
Sbjct: 238 CDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEAN 297

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            L +EM  R   P+   + +++ S+ + GR+  + +    M      P    Y +LI  Y
Sbjct: 298 DLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGY 357

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
           ++ G    AL L+ E+R     P+   +  +I+   ++G LDIA  +  DM + G  P  
Sbjct: 358 SRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDV 417

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            T++ L+      G +  A +L++ M S GL+P    YT  +    K      A  +  E
Sbjct: 418 VTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEE 477

Query: 506 MKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           MK  G+  D+   +VL+  + K G+ D A   ++ M   GI  ++     +  + + + L
Sbjct: 478 MKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGL 537

Query: 565 YESAKPLLETYVESAAKVDLVLYTSVLAH 593
              A+ +    ++      +V YT VL H
Sbjct: 538 LRKAEEVFSDMLKKGIHPSVVTYT-VLIH 565



 Score = 95.9 bits (237), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 97/470 (20%), Positives = 190/470 (40%), Gaps = 55/470 (11%)

Query: 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESR---------------DFDGMLSLFDEM 223
           T+L  FRW ++Q  +   +  +V + D+L ++                  DG   + D +
Sbjct: 67  TALRFFRWVEKQPNFHRSETAFVAILDILAKNGFMKPAYWVMEKAIEVKVDG--GVLDVL 124

Query: 224 VH-DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           V     +N        + +IQ  AK   LE     F K++++    D ++ N ++ L  +
Sbjct: 125 VGIGCGRNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKD 184

Query: 283 KGLPYKAFEIYESM--------------------EKGE---------------CSLDGST 307
           K +  +  E+Y  M                    ++GE               C  +  +
Sbjct: 185 KSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVS 244

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y +++  L+  G  D A +L ++M     + S + +  L+    K    + +  +  EM 
Sbjct: 245 YNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREML 304

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
           G G  P+   Y +++ S  + G++  A R  D M      P+   +  +I  +++ G   
Sbjct: 305 GRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFA 364

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A+ +F+++     +P+  TY+ L++    +G +D A  + + M   GL P + T+T L+
Sbjct: 365 EALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILV 424

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIR 546
               +   + +A ++  EM + G   D  A    +V  +K G+   A      M + G  
Sbjct: 425 RGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFP 484

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLV 595
            +      L     K   ++ A  L++         D V YTS++ AHL+
Sbjct: 485 PDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLI 534



 Score = 43.9 bits (102), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 59/126 (46%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y VL+  +  +G    A + ++ M+    S +  TY  +I  L K   +D A  LF EM
Sbjct: 559 TYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEM 618

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           + +   P+   +  L++          ++K+Y +M     +P +  + +L++  +K  KL
Sbjct: 619 ESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKDYKL 678

Query: 392 DTALRL 397
              LRL
Sbjct: 679 LAVLRL 684



 Score = 40.0 bits (92), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 215 GMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           G+L   +E+  D  K GI      Y  +I   A   +L+ +   F ++ D     +  +Y
Sbjct: 536 GLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITY 595

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N L+     + +   A+ ++  ME    S +  TY ++I   +       A+KL+++M +
Sbjct: 596 NALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLD 655

Query: 334 RNFRPSFNIFASLVDSMGKAGRL 356
           R  +P     ++L+  + K  +L
Sbjct: 656 REIKPDSCTHSALMKHLSKDYKL 678


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 162/353 (45%), Gaps = 2/353 (0%)

Query: 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMS 254
           G E  V  +  L       G+L +   + H  S++G+   +  YN +I  L +  +++ +
Sbjct: 520 GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 579

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
           +     +  +    +  +YN ++  +   G P KA  +  +M +   S +  TY  +I  
Sbjct: 580 FVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 639

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
              SG   +A+++   M++   +P    +  L+    K  +++++  ++ EM   G  P+
Sbjct: 640 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 699

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y +LI+ Y K  KLDTA  L + M+ +G RPN   + ++I    K      A  +  
Sbjct: 700 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 759

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M   G  P   TY+ +++    +G    A++++N M   G  P L TY++L+  L +  
Sbjct: 760 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 819

Query: 495 LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR 546
            V+ A  +  E++  G   D ++   ++  YI  G V+HA  +L  M  +G +
Sbjct: 820 KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 872



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 163/395 (41%), Gaps = 36/395 (9%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN VI  L K   +  +    KKV +S+   DT +Y  ++     K     A +++  M 
Sbjct: 388 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 447

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K  C  +  TY  +I  L  SGR++ A  L +EM      P+ +     + ++   G  +
Sbjct: 448 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYE 507

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF------- 410
            + +++++M+  G  P+   Y +LI     +G L  A+ L+  M   G  PN        
Sbjct: 508 DAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 567

Query: 411 ----------------------GLFTMI------IESHAKSGKLDIAMSIFTDMERAGFL 442
                                 GLFT I      I+ +   G    AM +  +M + G  
Sbjct: 568 NILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHS 627

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
               TY+ +++ +  SG   SA+++ + M   G +P   +YT L+    K   ++ A  +
Sbjct: 628 ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGL 687

Query: 503 LLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             EM   G    +V+ + ++  Y KD  +D A   L  M  SG R N      L     K
Sbjct: 688 FNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTK 747

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              +  A+ L +  +E     ++V YT+++  L +
Sbjct: 748 QNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 782



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 158/351 (45%), Gaps = 15/351 (4%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           + ++L    + +   YN ++      G    A  I + + + E S D  TY  MI    +
Sbjct: 373 YHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCR 432

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
              LD+A+++F +M +    P+   +++L++ +  +GR++ +  +  EM   G  P+A  
Sbjct: 433 KHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT 492

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
               I +    G  + A RL+ +M+  G  PN   +T +I     SG L +A+ +F  M 
Sbjct: 493 CTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMS 552

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL---TLLAKRK 494
           R G  P   TY+ L+ +   + ++  A  + N M   GL   + TY  ++    +L   K
Sbjct: 553 RDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPK 612

Query: 495 LVDVAAKILLEMKTM---GYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
                 K +L M  M   G+S + V+ + ++  Y   G+   ALR L  M   G + + +
Sbjct: 613 ------KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW 666

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
              +L     K +  ESA  L    V+     + V YT+++     C+DE+
Sbjct: 667 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGY--CKDEK 715



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 143/349 (40%), Gaps = 6/349 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAY 238
           ++ LF    R   + P    Y  L ++L E+R       + + M     +NG+ +    Y
Sbjct: 544 AIGLFHRMSRDGVF-PNTVTYNALINILVENRRIKYAFVVLNLM----GRNGLFTNIVTY 598

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I+        + +      +L      +  +YN ++  + + G    A  I + M  
Sbjct: 599 NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRD 658

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
           G C  D  +Y  +I    K  ++++A  LF EM +    P+   + +L+D   K  +LDT
Sbjct: 659 GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDT 718

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  +   M+  G RP+   Y  LI    K      A  L   M   G  PN   +T +I+
Sbjct: 719 ATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMID 778

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
              K+G   +A+ +F  M   G LP   TYS L+      G+V+ A  L+  +   GL P
Sbjct: 779 GLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 838

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
              TY  ++        V+ A   L  M   G    +    VL+  +K+
Sbjct: 839 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 887



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 26/370 (7%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM- 296
           YN +I+    +     +      + D  CK D  SY  L+  F        AF ++  M 
Sbjct: 633 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 692

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           + G C  +  TY  +I    K  +LD A  L + MK    RP+   +  L+  + K    
Sbjct: 693 DDGLCP-NEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 751

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++   M   G  P+   Y ++I+   K G    AL ++++M   G  PN   ++ +
Sbjct: 752 SGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 811

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I +  + GK++ A ++F ++ER G +P   TY  ++E +  SG+V+ A      M  AG 
Sbjct: 812 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 871

Query: 477 RPGLSTYTALLT------LLAKRKLVDVAAKILLEMKTMGY-SVDVSASDVLMVYIKDGS 529
           +P L TY  L+       LLA ++L   A   ++   + GY + D  A  V+   + +  
Sbjct: 872 QPTLWTYGVLIKGLKNEYLLADQRL--AALPDVVPNCSFGYQTTDQDAVSVMSAKLAE-- 927

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +D  L          ++  N +V  L  +      +  A  LL + +      D   Y S
Sbjct: 928 LDPGL---------SVQVQNALVSNLSTA----GRWFEANELLGSMISQGLCPDQEAYNS 974

Query: 590 VLAHLVRCQD 599
           +L  L+R ++
Sbjct: 975 LLCSLLRVRN 984



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 171/420 (40%), Gaps = 9/420 (2%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           +D D++L +F    ++    P    Y  L + L +S   +    L  EM+     +GI L
Sbjct: 434 HDLDSALQVFNQMAKEGCE-PNTVTYSTLINGLCDSGRVNEAFDLIREMI----LHGI-L 487

Query: 235 FSAYNRVIQYLAKADK--LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
            +A+      +A  D    E ++  F  + +  C+ +  +Y  L++     GL   A  +
Sbjct: 488 PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGL 547

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
           +  M +     +  TY  +I  L ++ R+  A  +   M       +   +  ++     
Sbjct: 548 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCI 607

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G    +M V   M   GH  +   Y ++I+ Y  +G   +ALR+ D MR  G +P+   
Sbjct: 608 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 667

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +T +I    K  K++ A  +F +M   G  P   TY+ L++ +    ++D+A  L   M 
Sbjct: 668 YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 727

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVD 531
            +G RP + TY  L+  L K+     A ++   M   G +   V+ + ++    K+GS  
Sbjct: 728 RSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTS 787

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            AL     M   G   N      L  +  +    E A+ L           D + Y  ++
Sbjct: 788 LALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 847



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 162/395 (41%), Gaps = 57/395 (14%)

Query: 163  KMVHITQALKVINDSDTSLSLFRWAK--RQSWYVPGDECYVMLFDVLNESRDFDGMLSLF 220
             +V     +K   DS  + S  R     R     P +  Y  L     +    +    LF
Sbjct: 629  NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 688

Query: 221  DEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
            +EMV D    N ++    Y  +I    K +KL+ +    + +  S C+ + Q+YNVL+  
Sbjct: 689  NEMVDDGLCPNEVT----YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHG 744

Query: 280  FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
               +     A E+ + M +     +  TY  MI  L K+G    A+++F +M E+   P+
Sbjct: 745  LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 804

Query: 340  FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
               ++SL+ ++G+ G+++ +  ++ E++  G  P    YV +IE+Y  +GK++ A     
Sbjct: 805  LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 864

Query: 400  EMRIAGFRPNFGLFTMIIES-------------------------------------HAK 422
             M  AG +P    + ++I+                                       AK
Sbjct: 865  RMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAK 924

Query: 423  SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
              +LD  +S+                + L+   +++G+   A +L  SM S GL P    
Sbjct: 925  LAELDPGLSV-------------QVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEA 971

Query: 483  YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
            Y +LL  L + + VD+A  +   M T G  V ++ 
Sbjct: 972  YNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNG 1006



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/297 (19%), Positives = 121/297 (40%), Gaps = 36/297 (12%)

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           + +   R     +++L+  + + G     M  Y  M   G +P+  +Y ++I +  K G 
Sbjct: 341 LSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGN 400

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           +  A  +  ++  +   P+   +T +I  H +   LD A+ +F  M + G  P   TYS 
Sbjct: 401 VADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYST 460

Query: 451 LLEMHASSGQVDSAM-----------------------------------KLYNSMTSAG 475
           L+     SG+V+ A                                    +L+  M + G
Sbjct: 461 LINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKG 520

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHAL 534
             P + TYTAL++ L    L+ VA  +   M   G +   V+ + ++ + +++  + +A 
Sbjct: 521 CEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAF 580

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             L  MG +G+ TN     ++ +        + A  ++   ++     +LV Y +++
Sbjct: 581 VVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTII 637


>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 481

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/480 (21%), Positives = 193/480 (40%), Gaps = 51/480 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNX 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E     GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQXXKAETLVRQLXKLGVQDXTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 139/303 (45%), Gaps = 10/303 (3%)

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M K     D   + +MI S  K G +  ++K+FQ+M+E     +   +  L   + + GR
Sbjct: 71  MPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVILRRGR 130

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              + + + +M   G  P+   +  +I  +  +GK++TA R +++M+     P+   +  
Sbjct: 131 YMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNT 190

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I  + +  K++ A   F +M+     PT  TY+ L++ + S  QVD A++L   M   G
Sbjct: 191 MINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFG 250

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI----KDGSVD 531
           ++P   TY+ LL  L   + +  A  IL EM  M   +  + + + M  I    K G++D
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVILKEM--MDKYLAPTDNSIFMRLISSHCKSGNLD 308

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + T       L E+  K   Y+ A  LL+  +E     D++L     
Sbjct: 309 AAADVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEK----DIILRPQST 364

Query: 592 AHL 594
            HL
Sbjct: 365 LHL 367


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 196/426 (46%), Gaps = 14/426 (3%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P ++ Y  +  +L  S      L LFD+M   S     ++F ++  V      A  L+ +
Sbjct: 109 PSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSF--VAGSCTNAGLLDAA 166

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES-MEKGECSLDGSTYELMIP 313
                K      +I+  +YN L+ L + +G    A  ++ES ++ G  S DG ++ ++I 
Sbjct: 167 VTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIK 226

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG-HR 372
            + + G    A++L + M E    P       LVD + +A +++    +   +Q  G   
Sbjct: 227 GVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCM 286

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y S+I  Y KAG+++ AL ++++M  +G RPN   + ++I  + K+  ++ A+ +
Sbjct: 287 PNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRM 346

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           +  +      P   T+S L++ +   GQ+D AM+++  M    ++P + T++ ++  L K
Sbjct: 347 YRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCK 406

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSA-----SDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
           +   + +A+ L  ++ +    D++      + V+ +  K G V+ A   +  M   G   
Sbjct: 407 Q---NRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHP 463

Query: 548 NNFIVRQL-FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
           + +    L    CMK  + E A  L    VE+  + D +   S ++ +++         +
Sbjct: 464 DKYTYTILIIGHCMKGRIPE-AITLFHKMVETGCRPDKITVNSFISCVLKAGMPNEVDQI 522

Query: 607 MAILSA 612
           M I S 
Sbjct: 523 MLIASG 528


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R      ++VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTXEHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I    K  + D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM   G +P+   +T +I+ 
Sbjct: 267 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 387 ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 139/332 (41%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 71  DJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K D A  +F +M   G +P    +
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXF 250

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSX 310

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A    + M     R +      L            
Sbjct: 311 KGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVD 370

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 371 AEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 135/311 (43%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFD 166

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++   K  
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKES 226

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           + D + +++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 227 KXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYN 286

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +D A +    M   
Sbjct: 287 TLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQE 346

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHA 533
             R     YTAL++ L        A K+L EM ++G   D  + + ++  + K G V   
Sbjct: 347 NXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKG 406

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 407 SKLLKEMQRDG 417



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 117/278 (42%), Gaps = 40/278 (14%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLDTA 394
           R    +F+ L+ +  ++G L  +++ Y       H+   P      ++E   K       
Sbjct: 69  RSDJYVFSGLITAYLESGFLRDAIECYRLTXE--HKFWVPFDTCRKVLEHLMKLKYFKLV 126

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              ++E+   G+  +   F +++    K G + JA S+F  + + G  P+  +Y+ L+  
Sbjct: 127 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNG 186

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +   G +D   +L ++M ++G++P + TY+ L+    K    D A ++  EM   G   +
Sbjct: 187 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPN 246

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V  + ++  + K+G VD A+                I +Q+        L +S  P   
Sbjct: 247 XVXFTTLIDGHCKNGRVDLAME---------------IYKQM--------LSQSLSP--- 280

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
                    DL+ Y +++  L +  D +   HL+  +S
Sbjct: 281 ---------DLITYNTLIYGLCKKGDLKQAHHLIDEMS 309


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 154/339 (45%), Gaps = 13/339 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L     +SRD    L L  E+    ++ G +     Y+ VI  L KA +L  +   F
Sbjct: 182 YTALIGGFCKSRDVGRGLELLGEV----TRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF 237

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +++    C     +YN L+  +   G   +A  +   M   +C+ D  TY  ++ +  K 
Sbjct: 238 EEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKM 294

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GRLD A +LFQ+M      P    F SLVD +   GR++ ++++  E+   G  P+   Y
Sbjct: 295 GRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 354

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             +++ Y KA ++  A  L  + R  GF PN   + +++    ++G+ D A+     +  
Sbjct: 355 NCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNS 414

Query: 439 AGFLPTPST---YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
            G  P P++   Y+ +L+     G+ D A++ Y  M   G  P  +T+  ++  L K   
Sbjct: 415 EGG-PCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQ 473

Query: 496 VDVAAKILLEMKTMGYSVDVSASD-VLMVYIKDGSVDHA 533
              A ++L EM   G++      D V+  Y + G +  A
Sbjct: 474 PQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKA 512



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 155/334 (46%), Gaps = 9/334 (2%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF 235
           D    L L     R+  + P    Y  + D L ++      + +F+EM    +   I+  
Sbjct: 194 DVGRGLELLGEVTRRG-FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM--SCAPTAIT-- 248

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
             YN +I    +A  ++ +     K++D  C  D  +Y  LM+ F   G    A+E+++ 
Sbjct: 249 --YNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQ 306

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M   + S D  T+  ++  L   GR++ A++L +E+  R   P+   +  +VD   KA +
Sbjct: 307 MVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQ 366

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG--FRPNFGLF 413
           +  + ++  + +  G  P+   Y  L+    +AG+ D AL+  D++   G     +  ++
Sbjct: 367 VRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMY 426

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
            +I+++  + G+ D A+  + +M + G++P  +T++ ++     + Q   A +L   M  
Sbjct: 427 AIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIK 486

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
            G  PG  T  A+++   +  ++  A ++  E++
Sbjct: 487 YGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 520



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 160/372 (43%), Gaps = 5/372 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N VI  L +A +L  +   ++++ D+    D  +Y  L+           A ++ + M 
Sbjct: 8   HNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAVQVLQEMV 66

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D +T  +++ SL    R+D A +L +EM  R    +   +++LVD + K  RLD
Sbjct: 67  SARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLD 126

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +   M   G  P+   Y S+I  + +A ++D A    ++M   G  P+   +T +I
Sbjct: 127 EAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALI 186

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               KS  +   + +  ++ R GF P   TYS +++    +G++  A+ ++  M+ A   
Sbjct: 187 GGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA--- 243

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P   TY +L+    +   +D A ++L +M     + DV     LM  + K G +D A   
Sbjct: 244 PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYEL 303

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            + M ++ +  +      L +        E A  LLE          +  Y  V+    +
Sbjct: 304 FQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK 363

Query: 597 CQDEQNERHLMA 608
               +    L+A
Sbjct: 364 ANQVRKAEELVA 375



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 73/137 (53%), Gaps = 2/137 (1%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESM--EKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           +T +YN+L+      G   +A +  + +  E G C    + Y +++ +L + GR D A++
Sbjct: 385 NTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQ 444

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
            ++EM +R + P+   FA++V ++ KA +   + ++  EM   GH P      +++ +Y 
Sbjct: 445 FYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYC 504

Query: 387 KAGKLDTALRLWDEMRI 403
           +AG +  A  L  E+R+
Sbjct: 505 RAGMIQKADELASELRL 521


>gi|302768873|ref|XP_002967856.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
 gi|300164594|gb|EFJ31203.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
          Length = 731

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 180/405 (44%), Gaps = 26/405 (6%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCC-- 257
           Y ML  V   + D +G    F  +     K    +   Y  +I   +KA K ++ +    
Sbjct: 67  YNMLLSVCCNAGDMNGAFGAFAALKRAGFKPDCMI---YTTLISTCSKALKTDLVFQARN 123

Query: 258 ---------------FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
                          ++++     + +  +Y  ++      G   KAF IY  M   +  
Sbjct: 124 PGPILHWTNSVLAQVYREMESVGVEANLLTYGAIIDGCARTGELAKAFGIYRIMLSKKIK 183

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMK 361
            D   +  +I +  +SG +  A ++F E+K  N   P+     SL+D+  KAG  D++ +
Sbjct: 184 PDRVIFNSLINACGRSGAVKRAFEVFTELKSENPINPNHVTMCSLIDACSKAGDGDSAYE 243

Query: 362 VY--MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           VY  M  +G G  P    Y + + + + +G L+ A  ++D+M+  G +P+   F+ +I+ 
Sbjct: 244 VYTMMRKRGIGGCPEP--YTAAVHACSSSGNLERAFSIYDDMKKDGVKPDEIFFSALIDV 301

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
              + K+D A  +  ++E+   +P P  +S L+ + +++G  + A+ LY ++ + G+RP 
Sbjct: 302 AGHASKIDCAFDVLQEVEKYSLVPGPVIFSSLMGVCSNTGNWEKAIFLYENIQAVGIRPS 361

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLR 538
           +ST  AL+T L + K    A + L E+K  G S + ++ S +L    K+     AL    
Sbjct: 362 VSTLNALMTALCRGKQFQNALQSLEELKEAGVSPNQLTYSILLEACEKENEAGIALNLYT 421

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
              + GI  N  +   +   C++        P L + V     VD
Sbjct: 422 HAIADGIVPNLAMCDNIIGICLEGIRSSIGPPKLASSVNPLWMVD 466



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/342 (20%), Positives = 141/342 (41%), Gaps = 58/342 (16%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD-------- 357
           STY +++     +G ++ A   F  +K   F+P   I+ +L+ +  KA + D        
Sbjct: 65  STYNMLLSVCCNAGDMNGAFGAFAALKRAGFKPDCMIYTTLISTCSKALKTDLVFQARNP 124

Query: 358 ---------TSMKVYMEMQ----------------GCGH-------------------RP 373
                       +VY EM+                GC                     +P
Sbjct: 125 GPILHWTNSVLAQVYREMESVGVEANLLTYGAIIDGCARTGELAKAFGIYRIMLSKKIKP 184

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAG-FRPNFGLFTMIIESHAKSGKLDIAMSI 432
              ++ SLI +  ++G +  A  ++ E++      PN      +I++ +K+G  D A  +
Sbjct: 185 DRVIFNSLINACGRSGAVKRAFEVFTELKSENPINPNHVTMCSLIDACSKAGDGDSAYEV 244

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           +T M + G    P  Y+  +   +SSG ++ A  +Y+ M   G++P    ++AL+ +   
Sbjct: 245 YTMMRKRGIGGCPEPYTAAVHACSSSGNLERAFSIYDDMKKDGVKPDEIFFSALIDVAGH 304

Query: 493 RKLVDVAAKILLEMKTMGYSV---DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549
              +D A  +L E++   YS+    V  S ++ V    G+ + A+     + + GIR + 
Sbjct: 305 ASKIDCAFDVLQEVEK--YSLVPGPVIFSSLMGVCSNTGNWEKAIFLYENIQAVGIRPSV 362

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             +  L  +  +   +++A   LE   E+    + + Y+ +L
Sbjct: 363 STLNALMTALCRGKQFQNALQSLEELKEAGVSPNQLTYSILL 404



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 93/220 (42%), Gaps = 6/220 (2%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPG-DECYVMLFDVLNESRDFDGMLSLFDE 222
           M  +  A     D D++  ++   +++   + G  E Y       + S + +   S++D+
Sbjct: 225 MCSLIDACSKAGDGDSAYEVYTMMRKRG--IGGCPEPYTAAVHACSSSGNLERAFSIYDD 282

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           M  D  K     FSA   +I     A K++ ++   ++V           ++ LM +  N
Sbjct: 283 MKKDGVKPDEIFFSA---LIDVAGHASKIDCAFDVLQEVEKYSLVPGPVIFSSLMGVCSN 339

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
            G   KA  +YE+++        ST   ++ +L +  +   A++  +E+KE    P+   
Sbjct: 340 TGNWEKAIFLYENIQAVGIRPSVSTLNALMTALCRGKQFQNALQSLEELKEAGVSPNQLT 399

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
           ++ L+++  K      ++ +Y      G  P+  M  ++I
Sbjct: 400 YSILLEACEKENEAGIALNLYTHAIADGIVPNLAMCDNII 439



 Score = 43.5 bits (101), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 18/144 (12%)

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD----- 497
           PT STY+ LL +  ++G ++ A   + ++  AG +P    YT L++  +K    D     
Sbjct: 62  PTLSTYNMLLSVCCNAGDMNGAFGAFAALKRAGFKPDCMIYTTLISTCSKALKTDLVFQA 121

Query: 498 ------------VAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
                       V A++  EM+++G   + ++   ++    + G +  A    R M S  
Sbjct: 122 RNPGPILHWTNSVLAQVYREMESVGVEANLLTYGAIIDGCARTGELAKAFGIYRIMLSKK 181

Query: 545 IRTNNFIVRQLFESCMKNALYESA 568
           I+ +  I   L  +C ++   + A
Sbjct: 182 IKPDRVIFNSLINACGRSGAVKRA 205


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 177/409 (43%), Gaps = 44/409 (10%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCF 258
           Y  L +   ++RDF     L DEM     K GI   +A YN +I+ L    +++ +   +
Sbjct: 36  YSTLINGFCKARDFQQAYRLLDEM----EKRGIVPHNAVYNTIIKGLCDNGRVDSALVHY 91

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           +  +   C     +Y +L+           A  I E M +  C+ +  TY  +I    K 
Sbjct: 92  RD-MQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKL 150

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G +D A+ LF +M E +  P    +  L+D   K  R     K+  EM   G  P+   Y
Sbjct: 151 GNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITY 210

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +L++S  K+GK   A  L   M     +P+   F ++I+   K G+LD+A  +F  M  
Sbjct: 211 NTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTD 270

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G LP   TY+ ++     + ++D A +L   MT AG  P + TY ++++ L K   VD 
Sbjct: 271 RGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDE 330

Query: 499 AAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A ++   ++  GY +DV + S ++    K   +D A + LR M  +G             
Sbjct: 331 AYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNG------------- 377

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
                     + P            D+V YT +L H   C+ +Q ++ L
Sbjct: 378 ----------SAP------------DVVAYT-ILIHGF-CKADQLDKSL 402



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 175/385 (45%), Gaps = 5/385 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP +  Y  +   L ++   D  L  + +M    + + I+    Y  ++  L K+ ++  
Sbjct: 65  VPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVIT----YTILVDALCKSARISD 120

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +    + ++++ C  +  +YN L+  F   G   +A  ++  M +  CS D  TY ++I 
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 180

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
              K  R     KL QEM +    P+F  + +L+DS+ K+G+   +  +   M     +P
Sbjct: 181 GYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKP 240

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           S   +  +I+ + K G+LD A  L+  M   G  P+   + ++I    ++ ++D A  + 
Sbjct: 241 SHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLL 300

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
             M  AG  P   TY+ ++     + QVD A ++Y  + + G    + T + L+  L K 
Sbjct: 301 ERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKS 360

Query: 494 KLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552
           + +D A K+L EM+  G + DV A  +L+  + K   +D +L +   M   G        
Sbjct: 361 RRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITY 420

Query: 553 RQLFESCMKNALYESAKPLLETYVE 577
             + +   K+A       LL+T +E
Sbjct: 421 SIVIDKLCKSARVRDGCMLLKTMLE 445



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 152/329 (46%), Gaps = 12/329 (3%)

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N L++ F+ K    +A++++++   G CS D  TY  +I    K+     A +L  EM++
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ-GCGHRPSAPMYVSLIESYAKAGKLD 392
           R   P   ++ +++  +   GR+D+++  Y +MQ  C   PS   Y  L+++  K+ ++ 
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCA--PSVITYTILVDALCKSARIS 119

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A  + ++M  AG  PN   +  +I    K G +D A+ +F  M      P   TY+ L+
Sbjct: 120 DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILI 179

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR-KLVDV--AAKILL--EMK 507
           + +    +     KL   M   G  P   TY  L+  L K  K +D    A+++L  + K
Sbjct: 180 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 239

Query: 508 TMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
              ++ ++    ++ ++ K G +D A    + M   G   + +    +     +    + 
Sbjct: 240 PSHFTFNL----MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDD 295

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           A+ LLE   E+    D+V Y S+++ L +
Sbjct: 296 ARQLLERMTEAGCPPDVVTYNSIVSGLCK 324



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 138/299 (46%), Gaps = 3/299 (1%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           + D  + LF++M+ +S    +     YN +I    K ++ +      ++++   C+ +  
Sbjct: 152 NMDEAVVLFNQMLENSCSPDVF---TYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFI 208

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN LM   +  G    AF + + M + +C     T+ LMI    K G+LD A +LFQ M
Sbjct: 209 TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLM 268

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            +R   P    +  ++    +A R+D + ++   M   G  P    Y S++    KA ++
Sbjct: 269 TDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQV 328

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D A  +++ +R  G+  +    + +I+   KS +LD A  +  +MER G  P    Y+ L
Sbjct: 329 DEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTIL 388

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           +     + Q+D ++  ++ M   G  P + TY+ ++  L K   V     +L  M   G
Sbjct: 389 IHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 447



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 122/242 (50%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F  YN ++  L K+ K   ++   + +L  DCK    ++N+++ +F   G    A+E+++
Sbjct: 207 FITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQ 266

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M    C  D  TY +MI    ++ R+D A +L + M E    P    + S+V  + KA 
Sbjct: 267 LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKAS 326

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +VY  ++  G+        +LI+   K+ +LD A +L  EM   G  P+   +T
Sbjct: 327 QVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYT 386

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I    K+ +LD +++ F++M   G +PT  TYS +++    S +V     L  +M   
Sbjct: 387 ILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLER 446

Query: 475 GL 476
           G+
Sbjct: 447 GV 448


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 169/387 (43%), Gaps = 14/387 (3%)

Query: 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           ++SLF  M  + S         Y+ +I    +  +LE  +  F  +L +  ++     NV
Sbjct: 71  VVSLFTRMARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRV-----NV 125

Query: 276 LMTLFLNKGLPYKAFEIYES-------MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           ++   L KGL   A  + E+       M +  C  D   Y  +I    + G+++ A  LF
Sbjct: 126 IVISQLLKGLC-DAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLF 184

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM ++   P+   + +++D + KA  +D +  V+ +M   G +P    Y  LI  Y   
Sbjct: 185 LEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLST 244

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           GK    +++ +EM   G  P+   + ++++   K+G+   A   F  M R G  P  + Y
Sbjct: 245 GKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIY 304

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + LL  +A+ G +       + M   G+ P    +  +    AK+ +++ A  I  +M+ 
Sbjct: 305 AILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQ 364

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G S DV +   L+    K G VD A+     M + G+  N F+   L         +E 
Sbjct: 365 QGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEK 424

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHL 594
           A+ L    ++    VD V + +++ +L
Sbjct: 425 AEELFFEVLDQGICVDAVFFNTLMCNL 451



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 157/357 (43%), Gaps = 3/357 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AYN VI    +  ++E +Y  F +++D     +  +Y  ++       +  +A  +++ M
Sbjct: 163 AYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQM 222

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I     +G+    +++ +EM      P    +A L+D + K GR 
Sbjct: 223 IDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRC 282

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +   +  M   G +P   +Y  L+  YA  G L       D M   G  PN  +F ++
Sbjct: 283 REARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIM 342

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
             ++AK   ++ AM IF  M + G  P   ++  L++     G+VD A+  +N M + G+
Sbjct: 343 FCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGV 402

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P +  +++L+  L      + A ++  E+   G  VD    + LM  +  +G V  A R
Sbjct: 403 TPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQR 462

Query: 536 WLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +  M   G+R N      L    C+   + E+AK LL+  V +  K +   YT +L
Sbjct: 463 LIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAK-LLDVMVSNGLKPNEFTYTILL 518



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 172/393 (43%), Gaps = 2/393 (0%)

Query: 222 EMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           +M+ + S +G+      Y  ++ YL K  +   +   F  +     K D   Y +L+  +
Sbjct: 252 QMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGY 311

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
             KG   +     + M     S +   + +M  + AK   ++ A+ +F +M+++   P  
Sbjct: 312 ATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDV 371

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             F +L+D++ K GR+D ++  + +M   G  P+  ++ SL+      GK + A  L+ E
Sbjct: 372 VSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFE 431

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           +   G   +   F  ++ +    G++  A  +   M R G  P   +Y+ L+  H  +G+
Sbjct: 432 VLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGR 491

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASD 519
           +D A KL + M S GL+P   TYT LL    K + VD A  +  EM   G + V  + + 
Sbjct: 492 IDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNT 551

Query: 520 VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           +L    + G    A      M +S  + + +    +     KN   + A  +        
Sbjct: 552 ILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKD 611

Query: 580 AKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
            ++D V +  ++  L++   +++   L A +SA
Sbjct: 612 PQLDSVTFNIMIGALLKGGRKEDAMDLFATISA 644



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 133/307 (43%), Gaps = 11/307 (3%)

Query: 309 ELMIPSLAKSGRL--DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV---Y 363
           E +I S A+SG L  D A+KLF E+       S   F  L+  + +AG    S +V   +
Sbjct: 16  ERVIASRARSGSLGLDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLF 75

Query: 364 MEM-QGCGHR--PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
             M + C  +  P+A  Y  LI  + + G+L+     +  +   G+R N  + + +++  
Sbjct: 76  TRMARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGL 135

Query: 421 AKSGKLDIAMSI-FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             + ++D A  I    M   G  P    Y+ ++      GQV+ A  L+  M   G+ P 
Sbjct: 136 CDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPN 195

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLR 538
           + TYT ++  L K ++VD A  +  +M   G   D    + L+  Y+  G     ++ L 
Sbjct: 196 VVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLE 255

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
            M + G+  +      L +   KN     A+   ++      K D+ +Y ++L H    +
Sbjct: 256 EMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIY-AILLHGYATK 314

Query: 599 DEQNERH 605
              +E H
Sbjct: 315 GALSEMH 321



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 144/369 (39%), Gaps = 38/369 (10%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           RQ    P    +  L D L +    D  +  F++M+++     I +FS+   ++  L   
Sbjct: 363 RQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSS---LVYGLCTV 419

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K E +   F +VLD    +D   +N LM    N+G   +A  + + M +     +  +Y
Sbjct: 420 GKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISY 479

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++     +GR+D A KL   M     +P+   +  L+    KA R+D +  ++ EM  
Sbjct: 480 NTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLM 539

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM--------------------------- 401
            G  P    Y +++    + G+   A  L+  M                           
Sbjct: 540 KGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDE 599

Query: 402 ------RIAGFRPNFG--LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
                 R+    P      F ++I +  K G+ + AM +F  +   G +P   TY  + E
Sbjct: 600 AFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAE 659

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G +     L+++M  +G  P      AL+  L  R  +  A   L ++    +S+
Sbjct: 660 NLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKLDEKNFSL 719

Query: 514 DVSASDVLM 522
           + S + +L+
Sbjct: 720 EASTTSMLI 728



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 96/219 (43%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +++   KA +++ +Y  F+++L         +YN ++      G   +A E+Y +M 
Sbjct: 514 YTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMI 573

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  TY +++  L K+  +D A K+F+ +  ++ +     F  ++ ++ K GR +
Sbjct: 574 NSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKE 633

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +M ++  +   G  P    Y  + E+  + G L     L+  M  +G  PN  +   ++
Sbjct: 634 DAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALV 693

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
                 G +  A      ++   F    ST S L+ +++
Sbjct: 694 RRLLHRGDISRAGVYLYKLDEKNFSLEASTTSMLISLYS 732


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 134/283 (47%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++  L +   +E  +   K++L+    +D  SYN L+      G   +AF++ E M +
Sbjct: 505 NALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQ 564

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
            E   D  TY  ++  LA  G++D   +L  E KE  F P+   +A L++   KA R++ 
Sbjct: 565 QEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIED 624

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++K +  +       S+ +Y  LI +Y + G +  A +L D M+  G  P    ++ +I 
Sbjct: 625 AVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIH 684

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
                G++D A  IF +M   G LP    Y+ L+  H   GQ+D    +   M+S G+RP
Sbjct: 685 GMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRP 744

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
              TYT ++    K   +  A ++L EM   G + D    + L
Sbjct: 745 NKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNAL 787



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 139/278 (50%), Gaps = 1/278 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +T + N L+     +G   + FE+ + M +    LD  +Y  +I    K G+++ A KL 
Sbjct: 500 NTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLK 559

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM ++ F+P    +  L+  +   G++D   ++  E +  G  P+   Y  L+E Y KA
Sbjct: 560 EEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKA 619

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            +++ A++ +  +       +  ++ ++I ++ + G +  A  +   M+  G LPT +TY
Sbjct: 620 DRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATY 679

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S L+      G+VD A +++  M + GL P +  YTAL+    K   +D+   ILLEM +
Sbjct: 680 SSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSS 739

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
            G   + ++ + ++  Y K G++  A   L  M  +GI
Sbjct: 740 NGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGI 777



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/465 (21%), Positives = 193/465 (41%), Gaps = 19/465 (4%)

Query: 220 FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK---IDTQSYNVL 276
           FD  V  S +         N ++  L KA++L  SY    +V D  C+    D  ++   
Sbjct: 206 FDIFVMFSKRGVFPCLKTCNLLLSSLVKANELHKSY----EVFDLACQGVAPDVFTFTTA 261

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  F   G    A +++  ME      +  TY  +I  L KSGR + A++    M     
Sbjct: 262 INAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKV 321

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            PS   +  L+  + K    + + +V +EM   G  P+  ++ +LI+ Y + G +  ALR
Sbjct: 322 NPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALR 381

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           + DEM + G +PNF  F  +++   +S +++ A  +   +  +G        S ++    
Sbjct: 382 VRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLM 441

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM-GYSVDV 515
                 SA+K+   + S  +R   S  T L+  L K +    A ++  ++  + G + + 
Sbjct: 442 ERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANT 501

Query: 516 SASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
             S+ L+  + + G+++     L+ M   G+  +      L   C K    E A  L E 
Sbjct: 502 VTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEE 561

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGP----EQ 630
            V+   + D   Y  ++  L       +   L+      + K + F+  ++T        
Sbjct: 562 MVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLH-----EAKEYGFVPNVYTYALLLEGY 616

Query: 631 RKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRA 675
            K   +    +FF  +DYE  E ++  + N+L+     +G +  A
Sbjct: 617 CKADRIEDAVKFFKNLDYEKVELSSVVY-NILIAAYCRIGNVTEA 660



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 223 MVHDSSKNG-ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           ++H++ + G +     Y  +++   KAD++E +   FK +     ++ +  YN+L+  + 
Sbjct: 593 LLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYC 652

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
             G   +AF++ ++M+        +TY  +I  +   GR+D A ++F+EM+     P+  
Sbjct: 653 RIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVF 712

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            + +L+    K G++D    + +EM   G RP+   Y  +I+ Y K G +  A  L +EM
Sbjct: 713 CYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEM 772

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
              G  P+   +  + + + K  +L + +
Sbjct: 773 IRNGIAPDTVTYNALQKGYCKERELTVTL 801


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 163/360 (45%), Gaps = 1/360 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I    K  K+  +    K++     K + ++Y++L+  F++      AF I+E M
Sbjct: 430 SYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDM 489

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     D + Y L++ +  K G +D AI++F+ MK+   +PS   F  +++    AG +
Sbjct: 490 IKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDM 549

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++     M+  G  P+   Y +LI    +  +++ A+ + D+M IAG  PN   +T+I
Sbjct: 550 KRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTII 609

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  +A SG +  A   FT ++ +G       Y  LL     SG++ SA+ +   M+   +
Sbjct: 610 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 669

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
                 Y  L+   A+R  V  AA ++ +MK  G   ++   +  +    K G +  A  
Sbjct: 670 PRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAEN 729

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            ++ M   G++ N      L +   K +L + A    E    +  K D   Y  ++  L+
Sbjct: 730 VIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLL 789



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/419 (20%), Positives = 185/419 (44%), Gaps = 7/419 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           ND++++  LF+ AK +      D    +++  +  +    G +   +E+V +  ++GI  
Sbjct: 337 NDAESADKLFKEAKTKL-----DNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDA 391

Query: 235 -FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
               Y+ ++     A   +     F+++ +   +    SY  L+ L++  G   KA  + 
Sbjct: 392 PIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVS 451

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           + ME      +  TY ++I           A  +F++M +   +P   I+  LV++  K 
Sbjct: 452 KEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKM 511

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G +D +++++  M+    +PS   +  +IE +A AG +  AL   D MR +G  P    +
Sbjct: 512 GNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTY 571

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +I    +  +++ A+S+   M  AG  P   TY+ ++  +A+SG +  A + +  +  
Sbjct: 572 NALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKE 631

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDH 532
           +GL+  +  Y  LL    K   +  A  +  EM       +    ++L+  + + G V  
Sbjct: 632 SGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWE 691

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           A   ++ M   GI  N         +C K    + A+ +++   +   K ++  +T+++
Sbjct: 692 AADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLI 750



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 163/360 (45%), Gaps = 4/360 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
           +RD  G LS  +EM  +  +  +  +S    +I    K +  E +   FK+       ++
Sbjct: 301 ARDMRGALSCVEEMKSEGLEMTVVTYSI---LIAGYGKTNDAESADKLFKEAKTKLDNLN 357

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
              Y+ ++      G   +A E+   ME+         Y  M+     +      + +F+
Sbjct: 358 GIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFE 417

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
            +KE  FRPS   +  L++   K G++  ++ V  EM+  G + +   Y  LI  +    
Sbjct: 418 RLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLH 477

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
               A  ++++M  +G +P+  ++ +++E+  K G +D A+ IF  M++    P+  T+ 
Sbjct: 478 DFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFR 537

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509
            ++E  A +G +  A+   + M  +G  P + TY AL+  L ++  V+ A  +L +M   
Sbjct: 538 PIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIA 597

Query: 510 GYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           G + +     ++M  Y   G +  A  +   +  SG++ + +I   L  +C K+   +SA
Sbjct: 598 GIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSA 657



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 138/307 (44%), Gaps = 3/307 (0%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +S   P    Y +L +   +  + D  + +F+ M  +  +     F     +I+  A A 
Sbjct: 491 KSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRP---IIEGFAVAG 547

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            ++ +      +  S C     +YN L+   + K    +A  + + M     + +  TY 
Sbjct: 548 DMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYT 607

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           +++   A SG +  A + F ++KE   +    I+ +L+ +  K+GR+ +++ V  EM   
Sbjct: 608 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 667

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
               +  +Y  LI+ +A+ G +  A  L  +M+  G  PN   FT  I +  K+G +  A
Sbjct: 668 KIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRA 727

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
            ++  +M   G  P   T++ L++  A     D A+K +  M SAGL+P  + Y  L+T 
Sbjct: 728 ENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTS 787

Query: 490 LAKRKLV 496
           L  R  V
Sbjct: 788 LLSRATV 794



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 130/325 (40%), Gaps = 36/325 (11%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           + LM+   AK G    A   F+ M+ R   P+  +F SLV +   A  +  ++    EM+
Sbjct: 256 FGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 315

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G   +   Y  LI  Y K    ++A +L+ E +      N  +++ II +H +SG +D
Sbjct: 316 SEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMD 375

Query: 428 IAMSIFTDMER-----------------------------------AGFLPTPSTYSCLL 452
            A  +  +ME                                     GF P+  +Y CL+
Sbjct: 376 RAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLI 435

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
            ++   G+V  A+ +   M S G++    TY+ L+           A  I  +M   G  
Sbjct: 436 NLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQ 495

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D +  ++L+  + K G++D A+R    M    ++ +N   R + E        + A   
Sbjct: 496 PDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDT 555

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
           L+    S     ++ Y +++  L+R
Sbjct: 556 LDLMRRSGCAPTVMTYNALIHGLIR 580



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 1/257 (0%)

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           ER  +PS   F  +V    K G    +   +  M+  G  P+A ++ SL+ +YA A  + 
Sbjct: 246 ERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMR 305

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            AL   +EM+  G       ++++I  + K+   + A  +F + +          YS ++
Sbjct: 306 GALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNII 365

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
             H  SG +D A +L   M   G+   +  Y +++      +       +   +K  G+ 
Sbjct: 366 HAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFR 425

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
             + +   L+ +Y+K G V  AL   + M S GI+ NN     L    +    + +A  +
Sbjct: 426 PSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSI 485

Query: 572 LETYVESAAKVDLVLYT 588
            E  ++S  + D  +Y 
Sbjct: 486 FEDMIKSGLQPDRAIYN 502


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 136/294 (46%), Gaps = 3/294 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
            D    L +EMV  +    +  F   N ++  L K  K+  +      ++      D  +
Sbjct: 240 LDKAFGLLNEMVLKNVNPNVCTF---NTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFT 296

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN LM  +       KA  ++  M +   + D  +Y +MI  L+K   LD A+ LF+ M+
Sbjct: 297 YNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMR 356

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
             N  P    ++SL+D + K+GR+++++K   EM   G  P+   Y SLI++  K+ ++D
Sbjct: 357 NENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVD 416

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A+ L  +++  G + N   + ++++   K G+L  A  +F D+   G      TYS ++
Sbjct: 417 KAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMI 476

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
                    D A+ L + M   G  P    Y  ++    ++ + D A K+L EM
Sbjct: 477 NGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 171/388 (44%), Gaps = 2/388 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L K  +   +    +K+    C+ D   YN ++       L   AF++Y  M
Sbjct: 156 SYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEM 215

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     +  TY  +I      G+LD A  L  EM  +N  P+   F +LVD + K G++
Sbjct: 216 FEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKM 275

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  +   M   G  P    Y +L++ Y    +   A  +++ M   G   +   ++++
Sbjct: 276 REAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVM 335

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I   +K   LD AM +F  M     +P    YS L++    SG+++SA+K  + M   G 
Sbjct: 336 ISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQ 395

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
            P + TYT+L+  L K   VD A  +L ++K  G   ++   ++L+  + KDG +  A +
Sbjct: 396 PPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQK 455

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHL 594
             + +   G   +      +     K +L++ A  LL    +     D + Y +++ A  
Sbjct: 456 VFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFF 515

Query: 595 VRCQDEQNERHLMAILSATKHKAHAFLC 622
            +  +++ E+ L  ++    +K +   C
Sbjct: 516 EKDMNDKAEKLLREMIDCVDYKDNGDTC 543



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 179/395 (45%), Gaps = 8/395 (2%)

Query: 207 LNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
           L +++ +  ++ LF  M +H    N I+L    N +I       ++  ++  F K+L   
Sbjct: 59  LVKTKHYPIVIHLFQRMELHGIQSNYITL----NILINSYCHLRQINSAFSVFAKILKLG 114

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
            + D  +Y  L+      G   ++   ++ +      LD  +Y  +I  L K G+   A+
Sbjct: 115 YQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPAL 174

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +L ++++    RP   ++ +++D + K   +  +  +Y EM      P+   Y SLI  +
Sbjct: 175 RLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGF 234

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
              G+LD A  L +EM +    PN   F  +++   K GK+  A S+   M + G  P  
Sbjct: 235 CIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDV 294

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ L++ +    +   A  ++N M   G+   + +Y+ +++ L+K K++D A  +   
Sbjct: 295 FTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEG 354

Query: 506 MKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           M+      DV A S ++    K G ++ AL+++  M   G   N      L ++  K+  
Sbjct: 355 MRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQ 414

Query: 565 YESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
            + A  LL+   +   + ++  Y  ++  L  C+D
Sbjct: 415 VDKAIALLKKIKDQGIQANMYTYNILVDGL--CKD 447



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 129/323 (39%), Gaps = 2/323 (0%)

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           +L +L   K  P     +++ ME      +  T  ++I S     ++++A  +F ++ + 
Sbjct: 55  ILGSLVKTKHYPI-VIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKL 113

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
            ++P    + +L+  +   G++  S+  +  +   G +     Y +LI    K G+   A
Sbjct: 114 GYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPA 173

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           LRL  ++     RP+  ++  II+   K   +  A  ++ +M      P   TY+ L+  
Sbjct: 174 LRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYG 233

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
               GQ+D A  L N M    + P + T+  L+  L K   +  A  ++  M   G   D
Sbjct: 234 FCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPD 293

Query: 515 VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           V   + LM  Y        A      M   G+  +      +     K  + + A  L E
Sbjct: 294 VFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFE 353

Query: 574 TYVESAAKVDLVLYTSVLAHLVR 596
                    D+V Y+S++  L +
Sbjct: 354 GMRNENVIPDVVAYSSLIDGLCK 376



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/273 (19%), Positives = 109/273 (39%), Gaps = 1/273 (0%)

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            L+ AI  F  M      P    F  ++ S+ K       + ++  M+  G + +     
Sbjct: 29  NLNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLN 88

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            LI SY    ++++A  ++ ++   G++P+   +T +I     +G++  +++    +   
Sbjct: 89  ILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQ 148

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G      +Y  L+      GQ   A++L   +     RP +  Y  ++  L K KLV  A
Sbjct: 149 GIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDA 208

Query: 500 AKILLEM-KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +  EM +   +   V+ + ++  +   G +D A   L  M    +  N      L + 
Sbjct: 209 FDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDG 268

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             K      AK L+   ++     D+  Y +++
Sbjct: 269 LCKEGKMREAKSLVAVMMKEGVGPDVFTYNALM 301


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 168/406 (41%), Gaps = 11/406 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L   L E+R     L L   MV D    G SL    Y  +I+ L K  ++  +    
Sbjct: 252 YTILIQGLYEARCVREALVLVFMMVQD----GCSLNLHMYTLLIKGLCKEGRIHDARGLL 307

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++          +YN ++  +   G    A  I   ME+  C+ D  TY  +I  L   
Sbjct: 308 DEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC-G 366

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G+LD A +L      R F P+   F +L++   KA R+D +++V   M     +     Y
Sbjct: 367 GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAY 426

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI    K  +L  A    +EM   G  PN  ++T II+ + K G +  A+ +F  ME 
Sbjct: 427 GVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEH 486

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P   TY  L+       ++  AM L   M   G+ PG+  YT L+    K+   D 
Sbjct: 487 EGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDN 546

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A ++   M+  G + D  A +VL     K G  + A     F+   G+         L +
Sbjct: 547 AFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEA---YSFLVRKGVVLTKVTYTSLVD 603

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
              K    + A  L+E  V    K DL  Y+ +L  L + Q + NE
Sbjct: 604 GFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCK-QKKLNE 648



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 141/323 (43%), Gaps = 8/323 (2%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A  +  +M    C LD   Y ++I  L K  RL  A +   EM      P+  I+ S++D
Sbjct: 407 ALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIID 466

Query: 349 SMGKAGRLDTSMKVY--MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
              K G +  +++V+  ME +GC   P+A  Y SLI    +  KL  A+ L  +M+  G 
Sbjct: 467 GYCKVGMVGAALEVFKLMEHEGC--HPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGI 524

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P    +T +I+   K  + D A  +F  ME+ G  P    Y+ L +    SG+ + A  
Sbjct: 525 TPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEA-- 582

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYI 525
            Y+ +   G+     TYT+L+   +K    D AA ++ +M   G   D+    VL+    
Sbjct: 583 -YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALC 641

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           K   ++ AL  L  M  SG++ N      +    +K   ++ AK L    + S  K    
Sbjct: 642 KQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSAT 701

Query: 586 LYTSVLAHLVRCQDEQNERHLMA 608
            YT  ++   +    +   HL+ 
Sbjct: 702 TYTVFISSYCKIGQIEEAEHLIG 724



 Score = 99.4 bits (246), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 165/403 (40%), Gaps = 24/403 (5%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L +F+  + +  + P    Y  L   L + +     ++L  +M  D    G+    AY 
Sbjct: 477 ALEVFKLMEHEGCH-PNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVI---AYT 532

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +IQ   K  + + ++  F+ +  +    D Q+YNVL       G   +A E Y  + + 
Sbjct: 533 TLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSG---RAEEAYSFLVRK 589

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
              L   TY  ++   +K+G  D A  L ++M     +     ++ L+ ++ K  +L+ +
Sbjct: 590 GVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEA 649

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           + +  +M   G + +   Y  +I    K GK D A  L++EM  +G +P+   +T+ I S
Sbjct: 650 LSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISS 709

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G+++ A  +  +MER G  P   TY   +      G +D A      M  A   P 
Sbjct: 710 YCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPN 769

Query: 480 LSTYTALLTLLAKRKLV----------------DVAAKILLEMKTMGYS-VDVSASDVLM 522
             TY  LL    K  L+                +   ++L  M   G +   V+ S ++ 
Sbjct: 770 CWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIA 829

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
            + K   ++ A   L  M    I  N  I   L + C    L+
Sbjct: 830 GFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLF 872



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 160/374 (42%), Gaps = 4/374 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN  ++ L + D  E     +  ++      DT +YN ++  +  KG    A   +  +
Sbjct: 146 CYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLL 205

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +    +D  T   ++    ++  L  A  L   M     R +   +  L+  + +A  +
Sbjct: 206 RESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCV 265

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++ +   M   G   +  MY  LI+   K G++  A  L DEM + G  P+   +  +
Sbjct: 266 REALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAM 325

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ + KSG++  A+ I   ME+ G  P   TY+ L+      G++D A +L N   + G 
Sbjct: 326 IDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLI-YGLCGGKLDEAEELLNGAIARGF 384

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P + T+T L+    K + +D A ++   M +    +D+ A  VL+ V IK   +  A  
Sbjct: 385 TPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKE 444

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L  M ++G+  N  I   + +   K  +  +A  + +         +   Y S++  L+
Sbjct: 445 TLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLI 504

Query: 596 RCQDEQNERHLMAI 609
             QD++  + +  I
Sbjct: 505 --QDKKLHKAMALI 516



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 171/422 (40%), Gaps = 27/422 (6%)

Query: 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS-----KN 230
           D  T+L+ F W  R+  +      +  L  +L   R       L   M+  S      + 
Sbjct: 65  DPATALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVLSMISCSGTAEDVRE 124

Query: 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
            +    A  RV        +L +S  C+   L S  + D       MT ++ K       
Sbjct: 125 AVDAIQAIRRV-----GGKRLVLSPKCYNLALRSLLRFD-------MTEYMGK------- 165

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
            +Y  + +     D  TY  MI +  K G L  A + F  ++E   +       +L+   
Sbjct: 166 -LYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGY 224

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            +   L  +  + M M   G R +   Y  LI+   +A  +  AL L   M   G   N 
Sbjct: 225 CRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNL 284

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
            ++T++I+   K G++  A  +  +M   G +P+  TY+ +++ +  SG++  A+ +   
Sbjct: 285 HMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKAL 344

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGS 529
           M   G  P   TY +L+  L   KL D A ++L      G++  V + ++++  Y K   
Sbjct: 345 MEQNGCNPDDWTYNSLIYGLCGGKL-DEAEELLNGAIARGFTPTVITFTNLINGYCKAER 403

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           +D ALR    M SS  + +      L    +K    + AK  L     +    ++V+YTS
Sbjct: 404 IDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTS 463

Query: 590 VL 591
           ++
Sbjct: 464 II 465



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 125/338 (36%), Gaps = 54/338 (15%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L   L + +  +  LS+ D+M     K  I    AY  +I  + K  K + +   F 
Sbjct: 633 YSVLLQALCKQKKLNEALSILDQMTVSGVKCNIV---AYTIIISEMIKEGKHDHAKSLFN 689

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           +++ S  K    +Y V ++ +   G   +A  +   ME+   + D  TY + I      G
Sbjct: 690 EMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMG 749

Query: 320 RLDAAIKLFQEMKERNFRPSFNIF--------------ASLVDSMGKAG--RLDTSMKVY 363
            +D A    + M + +  P+   +              A  +D+ G      L+T  ++ 
Sbjct: 750 YMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLL 809

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII------ 417
             M   G  P+   Y S+I  + KA +L+ A  L D M      PN  ++TM+I      
Sbjct: 810 ERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDI 869

Query: 418 ----------------------ESH-------AKSGKLDIAMSIFTDMERAGFLPTPSTY 448
                                 ES+          G  D A S+F D+    +      +
Sbjct: 870 KLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAW 929

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             L +    +G VD   +L  +M +   R    +Y+ L
Sbjct: 930 KILNDGLLKAGHVDFCSQLLAAMDNRHCRIDSESYSML 967



 Score = 43.1 bits (100), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 49/270 (18%), Positives = 104/270 (38%), Gaps = 18/270 (6%)

Query: 215 GMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           G +   + ++ +  ++G++     Y+  I        ++ ++   K+++D+ C+ +  +Y
Sbjct: 714 GQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTY 773

Query: 274 NVLMTLFLNKGLPYKAF----------------EIYESMEKGECSLDGSTYELMIPSLAK 317
            +L+  FL   L    +                ++ E M K   +    TY  +I    K
Sbjct: 774 WLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCK 833

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           + RL+ A  L   M  +   P+  I+  L+            +    +M   G +P    
Sbjct: 834 ATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLES 893

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  LI      G  D A  L+ ++    +  N   + ++ +   K+G +D    +   M+
Sbjct: 894 YHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMD 953

Query: 438 RAGFLPTPSTYSCLLE-MHASSGQVDSAMK 466
                    +YS L + +  +SG V S ++
Sbjct: 954 NRHCRIDSESYSMLTDSIREASGSVVSELR 983


>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 198/483 (40%), Gaps = 60/483 (12%)

Query: 81  GDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVE 140
            D E+       IE  DES   I    G    + G  + V  G I K   N  +  K   
Sbjct: 7   ADSEQVGFTRSNIEKDDESEEEIDLDLGFTISDDGVSEDV--GTIVKLLKNCGSDRK--- 61

Query: 141 VVNRWKWGPELETQLDKLQFVPKMVHITQAL-KVINDSDTSLSLFRWAKRQSWYVPGDEC 199
                    EL  +L++    P    + + L +V ND +T+ + F WA +Q  YV     
Sbjct: 62  ---------ELRNKLEECDVKPSNELVVEILSQVRNDWETAFTFFVWAGKQQGYVRSVRE 112

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM----------------------VHDSSKNGISLFSA 237
           Y  +  +L + R FD   +L DEM                      VHD  K  I+ F A
Sbjct: 113 YHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGK-AINTFHA 171

Query: 238 YNRVIQYLAKAD--KLEMSYCCFKKVLDSD----CKIDT-----QSYNVLMTLFLNK-GL 285
           Y R    +   D   L  + C +K V D++    C  DT     +S+N+++  + N  G 
Sbjct: 172 YKRFKLEMGIDDFQSLLSALCRYKNVSDAEHLIFCNKDTYPFDAKSFNIVLNGWCNVIGS 231

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           P +A  ++  M       D  +Y  MI   +K G L+  +KLF  MK+ +  P   ++ +
Sbjct: 232 PREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESIEPDRKVYNA 291

Query: 346 LVDSMGKAGRLDTSMKVYMEMQG-CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           ++ ++ KA  +  +  +   M+   G  P+   Y SLI+   KA K + A +++DEM   
Sbjct: 292 VIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEM--- 348

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIF---TDMERAGFLPTPSTYSCLLEMHASSGQV 461
                 GLF  I   HA    L     +F     M + G  PT  TY  L+         
Sbjct: 349 ---LEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCQPTVDTYIMLIRKLCRWRDF 405

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           D+ + L+N M   G+ P LS+Y  ++  L     ++ A     EMK  G   + +  D++
Sbjct: 406 DNVLLLWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKEKGMRPNENVEDMI 465

Query: 522 MVY 524
             +
Sbjct: 466 QSW 468


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLTKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  +++ A +LF+EM +    P+   F +L+D   K GR+  +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 SCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    K+  V   +K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 147/332 (44%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+  +L  G    A E Y   ++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLIIAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +   G RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G +P+   ++++I    K  K++ A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+V  AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K ++  YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 139/306 (45%), Gaps = 6/306 (1%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I +  +SG L  AI+ ++  KE  FR  F+    +++ + K          Y E   CG
Sbjct: 72  LIIAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECG 131

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           +  S   +  L+ S+ K G++  A  ++D +   G RP+   F  ++  + K G LD   
Sbjct: 132 YPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGF 191

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +   M+ +G  P   TYS L+       +++ A +L+  M   GL P   T+T L+   
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGH 251

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K   V +A +I  +M +   S D+   + L+  + K G +  A   +  M   G++ + 
Sbjct: 252 CKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN---ERHL 606
                L +   K    E+A    +  ++   ++D V YT++++ L  CQ+ ++   E+ L
Sbjct: 312 ITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGL--CQEGRSVDAEKML 369

Query: 607 MAILSA 612
             +LS 
Sbjct: 370 REMLSV 375



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 94/211 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  K+E +   F+++LD+    +  ++  L+      G    A EIY+ M
Sbjct: 208 TYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQM 267

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I  L K G L  A  L  EM  +  +P    + +L+D   K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDL 327

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +T+      M     R     Y +LI    + G+   A ++  EM   G +P  G +TMI
Sbjct: 328 ETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
           I    K G +     +  +M+R G++P+  T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 6/237 (2%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGI 232
           + D D    L + A + S   P    Y +L + L +    +    LF+EM+ +    NG+
Sbjct: 184 LGDLDEGFRL-KNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGV 242

Query: 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           +    +  +I    K  ++ ++   +K++L      D  +YN L+     KG   +A ++
Sbjct: 243 T----FTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            + M       D  TY  +I    K G L+ A    + M + N R     + +L+  + +
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQ 358

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
            GR   + K+  EM   G +P    Y  +I  + K G + T  +L  EM+  G+ P+
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPS 415


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 152/304 (50%), Gaps = 1/304 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    +  +L  +   +  +L++ C     +Y +L+  + N G  ++A  +   M+
Sbjct: 168 YNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQ 227

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K       + Y   +  L K+   + A++++Q MK+   R +   +  +++  GKA +  
Sbjct: 228 KNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPM 287

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           +S+KV+ EM+  G +P+   Y +L+ ++A+ G  + A  +++EM+ AG  P+   +  ++
Sbjct: 288 SSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 347

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E+++++G    A  IF+ ME  G  P  ++Y+ L++ +  +G    A   +  +   G+R
Sbjct: 348 EAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMR 407

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P + ++  LL+  AK   V    +++ ++   G   D  A + ++  Y + G +D   R 
Sbjct: 408 PTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERL 467

Query: 537 LRFM 540
           L  M
Sbjct: 468 LGAM 471



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 142/291 (48%), Gaps = 1/291 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   YN+L+  +  K    KA  IY ++ +  C     TY L++ +   SG+L  A  + 
Sbjct: 164 DIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVI 223

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM++    P+  ++ + +D + KA   + +++VY  M+    R +   Y  +I  Y KA
Sbjct: 224 SEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKA 283

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            +  ++L++++EM+  G +PN   +T ++ + A+ G  + A  +F +M++AG  P    Y
Sbjct: 284 KQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAY 343

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+E ++ +G    A ++++ M   G  P  ++Y  L+    +  L   A     E+K 
Sbjct: 344 NALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQ 403

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            G    + +  +L+  + K G+V      +  +  SG+R + F +  +  +
Sbjct: 404 QGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNA 454



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 145/312 (46%), Gaps = 12/312 (3%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLE 252
           VP ++ Y +L      S    G L   + ++ +  KNG+    + YN  +  L KA   E
Sbjct: 197 VPTEDTYALLLRAYCNS----GQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSE 252

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   ++++    C+ +T++Y +++ ++     P  + +++  M+   C  +  TY  ++
Sbjct: 253 KAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALV 312

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            + A+ G  + A ++F+EM++    P    + +L+++  +AG    + +++  M+  G  
Sbjct: 313 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCE 372

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y  L+++Y +AG    A   + E++  G RP      +++ +HAKSG +     +
Sbjct: 373 PDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEV 432

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-------TSAGLRPGLSTYTA 485
              + ++G  P     + +L  +  +G++D   +L  +M          G  P  STY  
Sbjct: 433 MAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNV 492

Query: 486 LLTLLAKRKLVD 497
           L+ +  +   +D
Sbjct: 493 LVNVYGRAGYLD 504



 Score = 46.2 bits (108), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 39/210 (18%), Positives = 88/210 (41%), Gaps = 7/210 (3%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           ++YN ++    +A   + +   F+++     +   +S+ +L++     G   +  E+   
Sbjct: 376 ASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQ 435

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR-------PSFNIFASLVD 348
           + K     D      M+ +  ++GRLD   +L   M+            P  + +  LV+
Sbjct: 436 LHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVN 495

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
             G+AG LD     +  +   G       + S I +YA+  +    L +++EM  AG  P
Sbjct: 496 VYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLEIFEEMVDAGCYP 555

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
           + G   +++ + +   +++   +I   M +
Sbjct: 556 DAGTAKVLLAACSDERQVEQVTAIVRSMHK 585


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 167/372 (44%), Gaps = 6/372 (1%)

Query: 218 SLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +L+DE++    S N +S    YN +I    + D +  +   +K++LD+    +  ++ +L
Sbjct: 270 NLWDEVIAKGISPNVVS----YNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTIL 325

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +  KG    AF I+  M+        +T  ++I  L K+GR      LF +   + F
Sbjct: 326 MDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGF 385

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   + +++D   K G ++ +  VY EM   G  PS   Y SLI+ + K   +D AL+
Sbjct: 386 VPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALK 445

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L ++M+  G + +   +  +I+   K   +  A  +  ++  AG  P    Y+ ++    
Sbjct: 446 LLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFK 505

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           +   V+ A+ LY  M + G+   L TYT+L+  L K   +  A+ I  EM + G   D  
Sbjct: 506 NMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDR 565

Query: 517 ASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           A  VL+  +   G  ++A + L  M    +  +  I   L     K    + A  L +  
Sbjct: 566 AHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEM 625

Query: 576 VESAAKVDLVLY 587
           ++     D + Y
Sbjct: 626 LDRGLVPDNITY 637



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/503 (21%), Positives = 203/503 (40%), Gaps = 51/503 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ES 295
            Y+ +I    K   +E ++  + ++     +    S N ++  +L       AF ++ ++
Sbjct: 182 TYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDA 241

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +E G  ++   T+  ++  L K G+++ A  L+ E+  +   P+   + +++    +   
Sbjct: 242 LESGLANV--FTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDN 299

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           ++ + KVY EM   G  P+A  +  L++ Y K G ++ A  ++  M+ A   P      +
Sbjct: 300 INAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGI 359

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           II+   K+G+      +F      GF+PT   Y+ +++     G ++ A  +Y  M   G
Sbjct: 360 IIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVG 419

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           + P   TYT+L+    K   +D+A K+L +MK  G  +D+ A   L+  + K   +  A 
Sbjct: 420 ITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAH 479

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             L  +  +G+  N FI   +          E A  L +  V      DL  YTS++  L
Sbjct: 480 ELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGL 539

Query: 595 VRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGA 654
           ++     + R L A    T+  +   L      P+ R                       
Sbjct: 540 LK-----SGRLLYASDIHTEMLSKGIL------PDDRAHT-------------------- 568

Query: 655 ARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALI 714
                 VL+N L   GQ   AR + +      + P  ++++  IA      NL       
Sbjct: 569 ------VLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNL------- 615

Query: 715 AVMHTLHRFRKRMLYYGVVPRRI 737
                  R    ML  G+VP  I
Sbjct: 616 ---QEAFRLHDEMLDRGLVPDNI 635



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 165/371 (44%), Gaps = 1/371 (0%)

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           M +D+ ++G++    +N ++ +L K  K+  +   + +V+      +  SYN ++     
Sbjct: 237 MFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCR 296

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           K     A ++Y+ M     + +  T+ +++    K G ++ A  +F  MK+ N  P+   
Sbjct: 297 KDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTT 356

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
              ++  + KAGR      ++ +    G  P+   Y ++I+ + K G ++ A  ++ EM 
Sbjct: 357 LGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMC 416

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             G  P+   +T +I+   K   +D+A+ +  DM+R G       Y  L++       + 
Sbjct: 417 EVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMK 476

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVL 521
           SA +L N +  AGL P    Y +++T       V+ A  +  +M   G   D+   + ++
Sbjct: 477 SAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLI 536

Query: 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
              +K G + +A      M S GI  ++     L         +E+A+ +LE        
Sbjct: 537 DGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMI 596

Query: 582 VDLVLYTSVLA 592
             +++Y +++A
Sbjct: 597 PSVLIYNTLIA 607



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 141/333 (42%), Gaps = 3/333 (0%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
            + + P    + +L D   +  D +   S+F  M      N +   +    +I+ L KA 
Sbjct: 312 DNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRM---KDANILPTDTTLGIIIKGLCKAG 368

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
           +       F K +          YN ++  F+ +G    A  +Y  M +   +    TY 
Sbjct: 369 RSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYT 428

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            +I    K   +D A+KL  +MK +  +     + +L+D   K   + ++ ++  E++G 
Sbjct: 429 SLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGA 488

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G  P+  +Y S+I  +     ++ A+ L+ +M   G   +   +T +I+   KSG+L  A
Sbjct: 489 GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYA 548

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
             I T+M   G LP    ++ L+    + GQ ++A K+   M    + P +  Y  L+  
Sbjct: 549 SDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAG 608

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             K   +  A ++  EM   G   D    D+L+
Sbjct: 609 HFKEGNLQEAFRLHDEMLDRGLVPDNITYDILV 641



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 140/301 (46%), Gaps = 2/301 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  + +V++   L +G   +A + +   +     LD   Y + +  L        A+ L 
Sbjct: 39  DCFTLHVMLRACLKEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLL 98

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +EM+   + P    F S++ +  K G +  ++++  +M  CG   +  +  SL++ Y   
Sbjct: 99  REMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQ 158

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L +AL L +E+  +G  PN   ++++I+   K+G ++ A   +++M+  G   +  + 
Sbjct: 159 GNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSL 218

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + +LE +       +A  ++N    +GL   + T+  LL+ L K   ++ A  +  E+  
Sbjct: 219 NSILEGYLKCQSWQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEVIA 277

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G S + VS +++++ + +  +++ A +  + M  +G   N      L +   K    E+
Sbjct: 278 KGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIEN 337

Query: 568 A 568
           A
Sbjct: 338 A 338



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 3/230 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            P    Y  L D   +  + D  L L ++M     K  I    AY  +I    K   ++ 
Sbjct: 421 TPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIK---AYGTLIDGFCKRRDMKS 477

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++    ++  +    +   YN ++T F N     +A ++Y+ M       D  TY  +I 
Sbjct: 478 AHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLID 537

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L KSGRL  A  +  EM  +   P       L++ +   G+ + + K+  +M G    P
Sbjct: 538 GLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIP 597

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
           S  +Y +LI  + K G L  A RL DEM   G  P+   + +++    K 
Sbjct: 598 SVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKG 647



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/367 (19%), Positives = 126/367 (34%), Gaps = 51/367 (13%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           PS      L+ +  +      A  L ++M + G   +     +++ +  K G +  A   
Sbjct: 3   PSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQH 62

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F   +  G       YS  + +         A+ L   M +AG  P   T+T+++T   K
Sbjct: 63  FLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVK 122

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFI 551
              V  A ++  +M   G S++++ +  LM  Y   G++  AL  +  +  SG+  N   
Sbjct: 123 EGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVT 182

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
              L + C KN   E A            +  +    S+L   ++CQ  QN         
Sbjct: 183 YSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNA-------- 234

Query: 612 ATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV-NVLLNYLVLMG 670
                                          F   +  LE G A  F  N LL++L   G
Sbjct: 235 -------------------------------FTMFNDALESGLANVFTFNTLLSWLCKEG 263

Query: 671 QINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYY 730
           ++N A  +W       + P  + ++  I       N++             +  K ML  
Sbjct: 264 KMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAAC----------KVYKEMLDN 313

Query: 731 GVVPRRI 737
           G  P  +
Sbjct: 314 GFTPNAV 320


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 150/318 (47%), Gaps = 5/318 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN V++ L  A++ E +     ++ D+DC +D  ++N+L+  F   GL Y+  E+ E M
Sbjct: 332 CYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQM 391

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C  D  TY  +I    K G +D A+ L + M     RP+   +  ++  +  A R 
Sbjct: 392 LEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERW 451

Query: 357 DTSMKVYMEM--QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
             +  +  +M  QGC   P+   + ++I    K G ++ A+ L  +M + G  P+   ++
Sbjct: 452 VDAEDLMSQMIEQGCS--PNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYS 509

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I+   K+GK D A+ +   M   G  P    YS +    +  G+++  +++++++   
Sbjct: 510 TVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDV 569

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
            +R     Y A+++ L KR   D A + L  M + G   + S   +L+  +  +G V  A
Sbjct: 570 TIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEA 629

Query: 534 LRWLRFMGSSGIRTNNFI 551
              L  + S G    +F+
Sbjct: 630 QEMLTELCSKGALRKHFM 647



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 155/377 (41%), Gaps = 4/377 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           L +EMV       +  F   N +I YL +    E  +    +++D  C  D + Y  ++ 
Sbjct: 247 LMEEMVRVGCPPNVVTF---NTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLD 303

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
               +G    A EI + M       +   Y  ++  L  + R + A +L  EM + +   
Sbjct: 304 GVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPL 363

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               F  LVD   + G +   +++  +M   G  P    Y ++I  + K G +D A+ L 
Sbjct: 364 DDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLL 423

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
             M   G RPN   +T++++    + +   A  + + M   G  P P T++ ++      
Sbjct: 424 KSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKK 483

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSA 517
           G V+ A++L   M   G  P L +Y+ ++  L K    D A ++L  M   G S + +  
Sbjct: 484 GLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 543

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           S +     K+G ++  ++    +    IR++  +   +  S  K    + A   L   V 
Sbjct: 544 SSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVS 603

Query: 578 SAAKVDLVLYTSVLAHL 594
           S    +   YT ++  L
Sbjct: 604 SGCMPNESTYTILIRGL 620



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 125/287 (43%), Gaps = 9/287 (3%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y  M+    ++G+L +A +L   +      P+   +  +V ++   GR+  ++ V  EM+
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVP---VPPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 368 GCGHRPSAPMYVSLIE---SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA-KS 423
             G  P  PMY  ++E   S    G   +A+R+  ++   G   + G   +++ +   + 
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG 202

Query: 424 GKLDIAMSIFTDMERA-GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           G +D A+ +  D+  + G  P   +Y+ +L+    + +      L   M   G  P + T
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMG 541
           +  L+  L +  L +   ++L +M   G + D+   + VL    K+G ++ A   L  M 
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMP 322

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
           S G++ N      + +       +E A+ LL    ++   +D V + 
Sbjct: 323 SYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFN 369



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/343 (18%), Positives = 129/343 (37%), Gaps = 41/343 (11%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS----------------- 349
           TY  ++ +L   GR+  A+ +  EM+ R   P   ++  ++++                 
Sbjct: 117 TYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVL 176

Query: 350 ----------------------MGKAGRLDTSMKVYMEMQGC-GHRPSAPMYVSLIESYA 386
                                   + G +D ++++  ++    G  P    Y ++++   
Sbjct: 177 QDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLC 236

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
            A +      L +EM   G  PN   F  +I    ++G  +    +   M   G  P   
Sbjct: 237 MAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIR 296

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            Y+ +L+     G ++ A ++ + M S GL+P +  Y  +L  L   +  + A ++L EM
Sbjct: 297 MYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEM 356

Query: 507 KTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
                 +D    ++L+  + ++G V   +  L  M   G   +      +     K  L 
Sbjct: 357 FDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLI 416

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
           + A  LL++      + + + YT VL  L   +   +   LM+
Sbjct: 417 DEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMS 459



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 44/272 (16%)

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +++  Y +AG+L +A RL   + +    PN   +  ++ +    G++  A+S+  +M 
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVPVP---PNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 438 RAGFLPTPSTYSCLLEMHAS---------------------------------------S 458
           R G  P P  Y  +LE   S                                        
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG 202

Query: 459 GQVDSAMKLYNSM-TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           G VD A++L   + TS G  P + +Y A+L  L   K       ++ EM  +G   +V  
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262

Query: 518 SDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            + L+ Y+ ++G  +   + L  M   G   +  +   + +   K    E A  +L+   
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMP 322

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
               K ++V Y +VL  L   +  +    L+A
Sbjct: 323 SYGLKPNVVCYNTVLKGLCSAERWEQAEELLA 354


>gi|302776756|ref|XP_002971525.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
 gi|300160657|gb|EFJ27274.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
          Length = 356

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 157/337 (46%), Gaps = 37/337 (10%)

Query: 172 KVINDSDTSLSLFRWAKRQSW----------------YVPGDECYVMLFDVLNESRDFDG 215
           ++I D++    LF+W K Q W                  P D  + + + +L E  D D 
Sbjct: 10  RLIEDAE---ELFQWIKLQDWDKLRPYNAMIAAYYQAKRPKD-AWDVYYQMLAEGIDPDD 65

Query: 216 MLSLFDEMVHDSSKNGISL---------------FSAYNRVIQYLAKADKLEMSYCCFKK 260
           +   +D +V  S KNG  +                 +YN VI    K   ++      ++
Sbjct: 66  VT--YDILVSGSGKNGYPIDRLFLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIRE 123

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           ++  + + D  S+N L+  +     P +  +++ +M+      D  TY  +I   ++S  
Sbjct: 124 MIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSAM 183

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
              AI++F+EM     +P F +++ LV   GKAG +  ++ ++  +Q  GHRP+   Y S
Sbjct: 184 HKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTS 243

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI ++   G L+ + + + +M   G R +  L   +I+++AK+G ++ A ++   +   G
Sbjct: 244 LISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQG 303

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             P  ++Y+ ++E    +G VD A+  Y SM+ AG +
Sbjct: 304 VCPNRASYAIIVEGFLHAGHVDEALAAYASMSEAGFK 340


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 155/336 (46%), Gaps = 3/336 (0%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           + +L+  +    Q  + P    +  L + L ++      + + D M+ +     +     
Sbjct: 276 EDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVY---T 332

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN VI  L K  +++ +     +++  DC  +T +YN L++    +    +A E+   + 
Sbjct: 333 YNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  T+  +I  L  +     A++LF+EM+ +   P    +  L+DS+   G+LD
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  +M+  G   S   Y +LI+ + KA K+  A  ++DEM + G   N   +  +I
Sbjct: 453 EALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLI 512

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   KS +++ A  +   M   G  P   TY+ LL      G +  A  +  +MTS G  
Sbjct: 513 DGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCE 572

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
           P + TY  L++ L K   V+VA+K+L  ++  G ++
Sbjct: 573 PDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIAL 608



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 160/366 (43%), Gaps = 2/366 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S +N +I+ L +A +L  +    + +       D +++  +M  ++ +G    A  I E 
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQ 249

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAG 354
           M +  CS    +  +++    K GR++ A+   QEM  ++ F P    F +LV+ + KAG
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            +  ++++   M   G+ P    Y S+I    K G++  A+   D+M      PN   + 
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYN 369

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I +  K  +++ A  +   +   G LP   T++ L++    +     AM+L+  M S 
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK 429

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           G  P   TY  L+  L  +  +D A  +L +M+  G +  V   + L+  + K   +  A
Sbjct: 430 GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREA 489

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
                 M   G+  N+     L +   K+   E A  L++  +    K D   Y S+L H
Sbjct: 490 EEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTH 549

Query: 594 LVRCQD 599
             R  D
Sbjct: 550 FCRGGD 555



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 161/363 (44%), Gaps = 8/363 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++  L KA  ++ +      +L      D  +YN +++     G   +A E  + M
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQM 356

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
              +CS +  TY  +I +L K  +++ A +L + +  +   P    F SL+  +      
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNH 416

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +M+++ EM+  G  P    Y  LI+S    GKLD AL +  +M ++G   +   +  +
Sbjct: 417 RVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL 476

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K+ K+  A  IF +ME  G      TY+ L++    S +V+ A +L + M   G 
Sbjct: 477 IDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQ 536

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +P   TY +LLT   +   +  AA I+  M + G   D+     L+  + K G V+ A +
Sbjct: 537 KPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596

Query: 536 WLRFMGSSGIRTN----NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            LR +   GI       N +++ LF    K    E+     E   ++ A  D V Y  V 
Sbjct: 597 LLRSIQMKGIALTPHAYNPVIQGLFR---KRKTTEAINLFREMLEQNEAAPDAVSYRIVF 653

Query: 592 AHL 594
             L
Sbjct: 654 RGL 656



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 180/406 (44%), Gaps = 7/406 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVH-DSSKNGISLFSAYNRVIQYLAKADKLE 252
           VP ++ +  +     E  D DG L + ++MV    S + +S+    N ++    K  ++E
Sbjct: 221 VPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSV----NVIVHGFCKEGRVE 276

Query: 253 MSYCCFKKVLDSDCKI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
            +    +++ + D    D  ++N L+      G    A EI + M +     D  TY  +
Sbjct: 277 DALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSV 336

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L K G +  A++   +M  R+  P+   + +L+ ++ K  +++ + ++   +   G 
Sbjct: 337 ISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 396

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P    + SLI+          A+ L++EMR  G  P+   + M+I+S    GKLD A++
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +   ME +G   +  TY+ L++    + ++  A ++++ M   G+     TY  L+  L 
Sbjct: 457 MLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLC 516

Query: 492 KRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           K + V+ A++++ +M   G   D  + + +L  + + G +  A   ++ M S+G   +  
Sbjct: 517 KSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIV 576

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               L     K    E A  LL +       +    Y  V+  L R
Sbjct: 577 TYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFR 622



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 113/245 (46%)

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
           +SK  +     +N +IQ L       ++   F+++    C+ D  +YN+L+    +KG  
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +A  + + ME   C+    TY  +I    K+ ++  A ++F EM+      +   + +L
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTL 511

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +D + K+ R++ + ++  +M   G +P    Y SL+  + + G +  A  +   M   G 
Sbjct: 512 IDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P+   +  +I    K+G++++A  +   ++  G   TP  Y+ +++      +   A+ 
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAIN 631

Query: 467 LYNSM 471
           L+  M
Sbjct: 632 LFREM 636



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 10/293 (3%)

Query: 311 MIPSLAKSGRLDAAIKLFQ-EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           ++ SL       AA++LF    K+ NF P   ++  ++  +G++G  D   K+  +M+  
Sbjct: 53  LLDSLRSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNS 112

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRL--W--DEMRIAGFRPNFGLFTMIIESHAKSGK 425
           G       ++ LIESYA+    D  L +  W  D+    G +P+   +  ++        
Sbjct: 113 GCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDF---GLKPDTHFYNRMLNLLVDGNN 169

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           L +       M   G  P  ST++ L++    + Q+  A+ +   M S GL P   T+T 
Sbjct: 170 LKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTT 229

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSS- 543
           ++    +   +D A +I  +M   G S  +VS + ++  + K+G V+ AL +++ M +  
Sbjct: 230 IMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD 289

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           G   + +    L     K    + A  +++  ++     D+  Y SV++ L +
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCK 342



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 122/300 (40%), Gaps = 5/300 (1%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM- 366
           YE ++  L +SG  D   K+ ++MK        + F  L++S  +    D  + V   M 
Sbjct: 86  YEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMI 145

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G +P    Y  ++        L        +M + G +P+   F ++I++  ++ +L
Sbjct: 146 DDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQL 205

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A+ +  DM   G +P   T++ +++ +   G +D A+++   M   G      +   +
Sbjct: 206 RPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVI 265

Query: 487 LTLLAKRKLVDVAAKILLEMKTM-GYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSG 544
           +    K   V+ A   + EM    G+  D    + L+  + K G V HA+  +  M   G
Sbjct: 266 VHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEG 325

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
              + +    +     K    + A   L+  +      + V Y ++++ L  C++ Q E 
Sbjct: 326 YDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTL--CKENQVEE 383


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 172/415 (41%), Gaps = 32/415 (7%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD-------- 265
           D M+SL+ EM+ D+  +        N ++    K   + ++   F ++L  +        
Sbjct: 168 DEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTY 227

Query: 266 -------CKID----------------TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
                  C+ D                  SY  L+      G  ++A E +  M +  C 
Sbjct: 228 TSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCF 287

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
               TY +++ +L +SGR   A+ LF EM+ER   P+   +  L+D + K GR+D ++K+
Sbjct: 288 PTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKM 347

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
             EM   G  PS   + +LI SY K G ++ A+ +   M      PN   +  +I    +
Sbjct: 348 LNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCR 407

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
              +D AM++   M  +   P   TY+ L+      G VDSA +L+  M   G  P   T
Sbjct: 408 GKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWT 467

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMG 541
           + A +  L +   V  A +IL  +K      +  A   L+  Y K G ++HA    + M 
Sbjct: 468 FNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRML 527

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +     N+     + +   K    + A  L+E   +   K  L  Y  ++  +++
Sbjct: 528 AEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLK 582



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 167/366 (45%), Gaps = 5/366 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +LSLF    R+    P    Y +L D L +    D  L + +EMV       +  F+A  
Sbjct: 309 ALSLF-GEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNA-- 365

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            +I    K   +E +      +       + ++YN L+  F       +A  +   M + 
Sbjct: 366 -LIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVES 424

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
           + S D  TY  +I  L + G +D+A +LF+ M    F P    F + +  + + GR+  +
Sbjct: 425 KLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEA 484

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            ++   ++    + +   Y +LI+ Y KAGK++ A  L+  M      PN   F ++I+ 
Sbjct: 485 HQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDG 544

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K GK+  AM +  DM +    PT  TY+ L+E        D A ++ N + S+G +P 
Sbjct: 545 LRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPN 604

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLR 538
           + TYTA +     +  ++ A ++++++K  G  +D    ++L+  Y   G +D A   LR
Sbjct: 605 VVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLR 664

Query: 539 FMGSSG 544
            M  +G
Sbjct: 665 RMFGTG 670



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 169/375 (45%), Gaps = 2/375 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L +A KL  +   + ++ +  C    ++Y VL+      G   +A  ++  M
Sbjct: 257 SYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEM 316

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +  C  +  TY ++I  L K GR+D A+K+  EM E+   PS   F +L+ S  K G +
Sbjct: 317 RERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMM 376

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + ++ V   M+     P+   Y  LI  + +   +D A+ L ++M  +   P+   +  +
Sbjct: 377 EDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTL 436

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    + G +D A  +F  M R GF P   T++  +      G+V  A ++  S+    +
Sbjct: 437 IHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHV 496

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +     YTAL+    K   ++ AA +   M       +    +V++  + K+G V  A+ 
Sbjct: 497 KANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAML 556

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHL 594
            +  M    ++        L E  +K   ++ A  +L   + S  + ++V YT+ + A+ 
Sbjct: 557 LVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYC 616

Query: 595 VRCQDEQNERHLMAI 609
            + + E+ E  ++ I
Sbjct: 617 SQGRLEEAEEMVIKI 631



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 189/460 (41%), Gaps = 26/460 (5%)

Query: 144 RWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVML 203
           RW+  P L+T +  L   P +  +     +  D  T+L+ FRW +R   +      +  L
Sbjct: 37  RWRKDPSLKTLIPSL--TPSL--LCSLFNLNPDPLTALNFFRWIRRHHNFPHSLATHHSL 92

Query: 204 FDVLNESRDFDGMLSLFDEMVHD--SSKNGISLFSAYNRVIQYLAKAD-KLEMSYCCFKK 260
             +L   R      ++ + M+    S  +   L +   R+    A AD + ++++     
Sbjct: 93  LLLLVRHRTLRAAENVRNSMIKSCTSPHDATFLLNLLRRMNTAAAAADHQHQLAF----- 147

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM--EKGECSLDG-STYELMIPSLAK 317
                 K+   SYN L+       +  +   +Y+ M  + G        T   M+ S  K
Sbjct: 148 ------KLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCK 201

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G +  A   F  +      P    + SLV    +   ++ +  V+  M     R +A  
Sbjct: 202 LGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMP----RRNAVS 257

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI    +AGKL  AL  W  MR  G  P    +T+++ +  +SG+   A+S+F +M 
Sbjct: 258 YTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMR 317

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   TY+ L++     G++D A+K+ N M   G+ P +  + AL+    KR +++
Sbjct: 318 ERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMME 377

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  +L  M++     +V   + L+  + +  S+D A+  L  M  S +  +      L 
Sbjct: 378 DAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLI 437

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               +  + +SA  L    +      D   + + +  L R
Sbjct: 438 HGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCR 477



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/446 (20%), Positives = 177/446 (39%), Gaps = 47/446 (10%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
            +  D  ++L ++MV       +     YN +I  L +   ++ +   F+ ++      D
Sbjct: 408 GKSMDRAMALLNKMVESKLSPDVV---TYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPD 464

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
             ++N  M      G   +A +I ES+++     +   Y  +I    K+G+++ A  LF+
Sbjct: 465 QWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFK 524

Query: 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
            M      P+   F  ++D + K G++  +M +  +M     +P+   Y  L+E   K  
Sbjct: 525 RMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEY 584

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
             D A  + + +  +G++PN   +T  I+++   G+L+ A  +   ++  G L     Y+
Sbjct: 585 DFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYN 644

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT-LLAKRKLVDVAAKILLEMKT 508
            L+  +   G +DSA  +   M   G  P   TY+ L+  L+ ++   + +  + L++  
Sbjct: 645 LLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSL 704

Query: 509 MGYSVDVSA-----------------------------SDVLMVYIKDGSVDHALRWLRF 539
              SVD +                              S ++    K G ++ A      
Sbjct: 705 TNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHH 764

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           M   GI  +  I   L  SC K  ++  A  LL++ +E +    L  Y  ++  L     
Sbjct: 765 MREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLF---- 820

Query: 600 EQNERHLMAILSATKHKAHAFLCGLF 625
           EQ            K KA A  C L 
Sbjct: 821 EQ----------MNKEKAEAVFCSLL 836



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 154/381 (40%), Gaps = 35/381 (9%)

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSS-KNGISLFSAYNRVIQYLAKADKLEMSY 255
           +  Y  L D   ++   +   SLF  M+ +    N I+    +N +I  L K  K++ + 
Sbjct: 500 EHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSIT----FNVMIDGLRKEGKVQDAM 555

Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
              + +   D K    +YN+L+   L +    +A EI   +       +  TY   I + 
Sbjct: 556 LLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAY 615

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
              GRL+ A ++  ++K         I+  L+++ G  G LD++  V   M G G  PS 
Sbjct: 616 CSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSY 675

Query: 376 PMYVSL-----IESYAKAGK----LDTALR--------------------LWDEMRIAGF 406
             Y  L     IE + K G     LD +L                     L+++M   G 
Sbjct: 676 LTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGC 735

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            PN   ++ +I    K G+L++A S++  M   G  P+   ++ LL      G    A+ 
Sbjct: 736 VPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVT 795

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI- 525
           L +SM        L +Y  L+  L ++   + A  +   +   GY+ D  A  VL+  + 
Sbjct: 796 LLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLA 855

Query: 526 KDGSVDHALRWLRFMGSSGIR 546
           K G VD     L  M  +G R
Sbjct: 856 KTGYVDQCSELLNLMEKNGCR 876



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 122/281 (43%), Gaps = 11/281 (3%)

Query: 215 GMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           G L   +EMV      G+ L S  YN +I        L+ ++   +++  + C+    +Y
Sbjct: 619 GRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTY 678

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK--LFQEM 331
           ++LM         +   E ++        LD S   + + +     ++D  I   LF++M
Sbjct: 679 SILMK--------HLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKM 730

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            E    P+ N ++ L++ + K GRL+ +  +Y  M+  G  PS  ++ SL+ S  K G  
Sbjct: 731 AECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMF 790

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A+ L D M       +   + ++I    +    + A ++F  + R G+      +  L
Sbjct: 791 GEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVL 850

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           ++  A +G VD   +L N M   G R    TY+ L+  L +
Sbjct: 851 IDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQELNR 891


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 149/334 (44%), Gaps = 5/334 (1%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  ++N L+  +        A ++++ M     + D  +Y  +I  L ++GR+D A++LF
Sbjct: 9   DAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELF 68

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM +    P  +++A+LV  +  A R +  + +   M+  G RPS   Y ++++   + 
Sbjct: 69  GEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRE 124

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            K   A  +  EM   G  P     T +I ++ K G++  A+ +   M+  G  P   TY
Sbjct: 125 RKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTY 184

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++   + G+V  AM L N M + G+ P   TY  L+        ++ A ++L  M+ 
Sbjct: 185 NALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEG 244

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D    + L+    KDG  D A      + + GI+ N      L     K+   + 
Sbjct: 245 DGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADI 304

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
           A   LE  V +    D   Y+S + HL + +  Q
Sbjct: 305 AWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQ 338



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 159/361 (44%), Gaps = 5/361 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I    + ++++++   F K+       D  SY  L+      G   +A E++  M
Sbjct: 12  TFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM 71

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++     D   Y  ++  L  + R +  + + + MKE  +RPS   +A++VD   +  + 
Sbjct: 72  DQP----DMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKA 127

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++  EM   G  P      ++I +Y K G++  ALR+ + M++ G +PN   +  +
Sbjct: 128 KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNAL 187

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++     GK+  AM++   M   G  P   TY+ L+      G ++SA +L   M   GL
Sbjct: 188 VQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGL 247

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
                TY AL+  L K    D A  +   ++T G   + V+ + ++    K G  D A +
Sbjct: 248 IADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWK 307

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           +L  M S+G   + +      E   K    +     +   ++   K   V YT V+  L+
Sbjct: 308 FLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLL 367

Query: 596 R 596
           +
Sbjct: 368 K 368



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 136/307 (44%), Gaps = 1/307 (0%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           CK +  +YN L+  F N+G  +KA  +   M     + D  TY L+I      G +++A 
Sbjct: 177 CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAF 236

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +L + M+          + +L++++ K GR D +  ++  ++  G +P+A  + SLI   
Sbjct: 237 RLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 296

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K+GK D A +  ++M  AG  P+   ++  IE   K       +S   +M +    P+ 
Sbjct: 297 CKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPST 356

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
             Y+ ++             + +  M S+G  P + TYT  +        ++ A  +L+E
Sbjct: 357 VNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLME 416

Query: 506 MKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           M   G +VD  A + LM  +   G  DHA+  L+ M S     N F    L    ++  L
Sbjct: 417 MSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRL 476

Query: 565 YESAKPL 571
            E   PL
Sbjct: 477 VEDVLPL 483



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 171/436 (39%), Gaps = 49/436 (11%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L + L E+   D  + LF EM              Y  +++ L  A++ E      +
Sbjct: 48  YATLIEGLCEAGRIDEAVELFGEMDQPD-------MHMYAALVKGLCNAERGEEGLLMLR 100

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM-EKG--ECSLDGSTYELMIPSLA 316
           ++ +   +  T++Y  ++     +    +A E+ + M EKG   C +   T   +I +  
Sbjct: 101 RMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVV---TCTAVINAYC 157

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           K GR+  A+++ + MK R  +P+   + +LV      G++  +M +  +M+ CG  P A 
Sbjct: 158 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAV 217

Query: 377 MYV-----------------------------------SLIESYAKAGKLDTALRLWDEM 401
            Y                                    +LI +  K G+ D A  L+D +
Sbjct: 218 TYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 277

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G +PN   F  +I    KSGK DIA      M  AG  P   TYS  +E        
Sbjct: 278 ETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 337

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDV 520
              +     M    ++P    YT ++  L K +   + A+   EM + G + DV + +  
Sbjct: 338 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 397

Query: 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +  Y  +G ++ A   L  M  +G+  +      L +        + A  +L+     A+
Sbjct: 398 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 457

Query: 581 KVDLVLYTSVLAHLVR 596
             +   Y  +L HLVR
Sbjct: 458 VPNQFTYFILLRHLVR 473



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G RP A  + SLI  Y +  ++D A  L+D+M + GF  +   +  +IE   ++G++D A
Sbjct: 5   GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEA 64

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           + +F +M++    P    Y+ L++   ++ + +  + +   M   G RP    Y A++  
Sbjct: 65  VELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDF 120

Query: 490 LAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
             + +    A ++L EM   G +   V+ + V+  Y K+G +  ALR L  M   G + N
Sbjct: 121 RCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPN 180

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
            +    L +          A  LL          D V Y
Sbjct: 181 VWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTY 219



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 120/298 (40%), Gaps = 32/298 (10%)

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M    +RP    F SL+    +  ++D +  ++ +M   G       Y +LIE   +AG+
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 391 LDTALRLWDE-------------------------------MRIAGFRPNFGLFTMIIES 419
           +D A+ L+ E                               M+  G+RP+   +  +++ 
Sbjct: 61  IDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDF 120

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             +  K   A  +  +M   G  P   T + ++  +   G++  A+++   M   G +P 
Sbjct: 121 RCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPN 180

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLR 538
           + TY AL+        V  A  +L +M+  G + D    ++L+     DG ++ A R LR
Sbjct: 181 VWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLR 240

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            M   G+  + +    L  +  K+   + A  L ++      K + V + S++  L +
Sbjct: 241 LMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCK 298



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 117/298 (39%), Gaps = 23/298 (7%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL---NKGLPYKAFEIY 293
            Y+  I++L K    +       ++L  D K  T +Y +++   L   N GL  +    +
Sbjct: 323 TYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART---W 379

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
             M    C+ D  TY   + +    GRL+ A  +  EM +         + +L+D     
Sbjct: 380 GEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASI 439

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA-----------------KAGKLDTALR 396
           G+ D ++ +  +M      P+   Y  L+                     KA +L     
Sbjct: 440 GQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFG 499

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+D M+   F PN G ++ I+E  ++ G+ + A S+ + M+          Y+ L+    
Sbjct: 500 LFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFC 559

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
            S +   A  L  SM   G  P L +Y  LL+ L      D A +I +  +   YS D
Sbjct: 560 KSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPD 617



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 113/259 (43%), Gaps = 18/259 (6%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
            +G L+  + ++ + SKNG+++ + AYN ++   A   + + +    K++       +  
Sbjct: 403 IEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQF 462

Query: 272 SYNVLM-----------TLFLNKGLPYKAFEI------YESMEKGECSLDGSTYELMIPS 314
           +Y +L+            L L     +KA E+      ++ M+K E   +  TY  ++  
Sbjct: 463 TYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEG 522

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            ++ GR + A  L   MKE +   + +I+ +LV    K+ R   +  +   M   G  P 
Sbjct: 523 FSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQ 582

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  L+      G+ D A  ++   R   + P+  ++ +II+   K G  DI+  +  
Sbjct: 583 LMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMII 642

Query: 435 DMERAGFLPTPSTYSCLLE 453
            +ER    P+  TY+ L E
Sbjct: 643 MLERMNCRPSHQTYAMLTE 661



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 124/310 (40%), Gaps = 20/310 (6%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LS   EM+    K        Y  VI  L K     +    + +++ S C  D  +Y   
Sbjct: 341 LSFIGEMLQKDVKPSTV---NYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 397

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +  +G   +A  +   M K   ++D   Y  ++   A  G+ D A+ + ++M     
Sbjct: 398 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 457

Query: 337 RPS----FNIFASLVD-------------SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            P+    F +   LV               + KA  L     ++  M+     P++  Y 
Sbjct: 458 VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYS 517

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           S++E +++ G+ + A  L   M+      N  ++T ++    KS +   A  +   M + 
Sbjct: 518 SILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQH 577

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           GF+P   +Y  LL      GQ D A +++ +       P    +  ++  L K+   D++
Sbjct: 578 GFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDIS 637

Query: 500 AKILLEMKTM 509
            ++++ ++ M
Sbjct: 638 REMIIMLERM 647



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 17/244 (6%)

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA----------- 316
           +DT +YN LM    + G    A  I + M       +  TY +++  L            
Sbjct: 424 VDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPL 483

Query: 317 ------KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
                 K+  L     LF  MK+  F P+   ++S+++   + GR + +  +   M+   
Sbjct: 484 TPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDS 543

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
              +  +Y +L+  + K+ +   A  L   M   GF P    +  ++      G+ D A 
Sbjct: 544 ISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAK 603

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            IF +     + P    +  +++     G  D + ++   +     RP   TY  L   L
Sbjct: 604 EIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEEL 663

Query: 491 AKRK 494
             R+
Sbjct: 664 PDRE 667


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 154/336 (45%), Gaps = 3/336 (0%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           + +L+  +    Q  + P    +  L + L ++      + + D M+ +     +     
Sbjct: 276 EDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVY---T 332

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN VI  L K  +++ +     +++  DC  +T +YN L++    +    +A E+   + 
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  T+  +I  L  +     A++LF+EM+ +   P    +  L+DS+   G+LD
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +  +M+  G   S   Y +LI+ + KA K   A  ++DEM + G   N   +  +I
Sbjct: 453 EALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLI 512

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   KS +++ A  +   M   G  P   TY+ LL      G +  A  +  +MTS G  
Sbjct: 513 DGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCE 572

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
           P + TY  L++ L K   V+VA+K+L  ++  G ++
Sbjct: 573 PDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL 608



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 160/366 (43%), Gaps = 2/366 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           S +N +I+ L +A +L  +    + +       D +++  +M  ++ +G    A  I E 
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQ 249

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAG 354
           M +  CS    +  +++    K GR++ A+   QEM  ++ F P    F +LV+ + KAG
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
            +  ++++   M   G+ P    Y S+I    K G++  A+ + D+M      PN   + 
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYN 369

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I +  K  +++ A  +   +   G LP   T++ L++    +     AM+L+  M S 
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK 429

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           G  P   TY  L+  L  +  +D A  +L +M+  G +  V   + L+  + K      A
Sbjct: 430 GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREA 489

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
                 M   G+  N+     L +   K+   E A  L++  +    K D   Y S+L H
Sbjct: 490 EEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTH 549

Query: 594 LVRCQD 599
             R  D
Sbjct: 550 FCRGGD 555



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 161/363 (44%), Gaps = 8/363 (2%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++  L KA  ++ +      +L      D  +YN +++     G   +A E+ + M
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
              +CS +  TY  +I +L K  +++ A +L + +  +   P    F SL+  +      
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNH 416

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +M+++ EM+  G  P    Y  LI+S    GKLD AL +  +M ++G   +   +  +
Sbjct: 417 RVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL 476

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K+ K   A  IF +ME  G      TY+ L++    S +V+ A +L + M   G 
Sbjct: 477 IDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ 536

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
           +P   TY +LLT   +   +  AA I+  M + G   D+     L+  + K G V+ A +
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596

Query: 536 WLRFMGSSGIRTN----NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            LR +   GI       N +++ LF    K    E+     E   ++ A  D V Y  V 
Sbjct: 597 LLRSIQMKGINLTPHAYNPVIQGLFR---KRKTTEAINLFREMLEQNEAPPDAVSYRIVF 653

Query: 592 AHL 594
             L
Sbjct: 654 RGL 656



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 179/406 (44%), Gaps = 7/406 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVH-DSSKNGISLFSAYNRVIQYLAKADKLE 252
           VP ++ +  +     E  D DG L + ++MV    S + +S+    N ++    K  ++E
Sbjct: 221 VPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSV----NVIVHGFCKEGRVE 276

Query: 253 MSYCCFKKVLDSDCKI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
            +    +++ + D    D  ++N L+      G    A EI + M +     D  TY  +
Sbjct: 277 DALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSV 336

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L K G +  A+++  +M  R+  P+   + +L+ ++ K  +++ + ++   +   G 
Sbjct: 337 ISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 396

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P    + SLI+          A+ L++EMR  G  P+   + M+I+S    GKLD A++
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +   ME +G   +  TY+ L++    + +   A ++++ M   G+     TY  L+  L 
Sbjct: 457 MLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLC 516

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNF 550
           K + V+ AA+++ +M   G   D    + L+  + + G +  A   ++ M S+G   +  
Sbjct: 517 KSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIV 576

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               L     K    E A  LL +       +    Y  V+  L R
Sbjct: 577 TYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFR 622



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 113/252 (44%)

Query: 227 SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286
           +SK  +     +N +IQ L       ++   F+++    C+ D  +YN+L+    +KG  
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451

Query: 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346
            +A  + + ME   C+    TY  +I    K+ +   A ++F EM+      +   + +L
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511

Query: 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406
           +D + K+ R++ + ++  +M   G +P    Y SL+  + + G +  A  +   M   G 
Sbjct: 512 IDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571

Query: 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
            P+   +  +I    K+G++++A  +   ++  G   TP  Y+ +++      +   A+ 
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAIN 631

Query: 467 LYNSMTSAGLRP 478
           L+  M      P
Sbjct: 632 LFREMLEQNEAP 643



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 129/293 (44%), Gaps = 38/293 (12%)

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDA--------------------------- 323
           +I E M+   C +  ST+ ++I S A+    D                            
Sbjct: 104 KILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNL 163

Query: 324 -----AIKLFQ----EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
                ++KL +    +M     +P  + F  L+ ++ +A +L  ++ +  +M   G  P 
Sbjct: 164 LVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPD 223

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              + ++++ Y + G LD ALR+ ++M   G   +     +I+    K G+++ A++   
Sbjct: 224 EKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQ 283

Query: 435 DM-ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           +M  + GF P   T++ L+     +G V  A+++ + M   G  P + TY ++++ L K 
Sbjct: 284 EMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKL 343

Query: 494 KLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
             V  A ++L +M T   S + V+ + ++    K+  V+ A    R + S GI
Sbjct: 344 GEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 396



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 4/295 (1%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQ-EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
           ST   ++ SL       AA++LF    K+ NF P   ++  ++  +G++G  D   K+  
Sbjct: 48  STDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILE 107

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA-GFRPNFGLFTMIIESHAKS 423
           +M+          ++ LIESYA+    D  L + D M    G +P+   +  ++      
Sbjct: 108 DMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDG 167

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
             L +       M   G  P  ST++ L++    + Q+  A+ +   M S GL P   T+
Sbjct: 168 NSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTF 227

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGS 542
           T ++    +   +D A +I  +M   G S  +VS + ++  + K+G V+ AL +++ M +
Sbjct: 228 TTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSN 287

Query: 543 S-GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             G   + +    L     K    + A  +++  ++     D+  Y SV++ L +
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCK 342



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 123/300 (41%), Gaps = 5/300 (1%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM- 366
           YE ++  L +SG  D   K+ ++MK        + F  L++S  +    D  + V   M 
Sbjct: 86  YEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMI 145

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G +P    Y  ++        L        +M + G +P+   F ++I++  ++ +L
Sbjct: 146 DEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQL 205

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A+ +  DM   G +P   T++ +++ +   G +D A+++   M   G      +   +
Sbjct: 206 RPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVI 265

Query: 487 LTLLAKRKLVDVAAKILLEMKTM-GYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSG 544
           +    K   V+ A   + EM    G+  D    + L+  + K G V HA+  +  M   G
Sbjct: 266 VHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEG 325

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
              + +    +     K    + A  +L+  +      + V Y ++++ L  C++ Q E 
Sbjct: 326 YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTL--CKENQVEE 383


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 157/319 (49%), Gaps = 4/319 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I+   K  +L  +   +  +L++ C     +Y +L+  + N G  ++A  +   M 
Sbjct: 178 YNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMR 237

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     + + Y   +  L K+   + A++++Q MK    R +   F  +++  GKA +  
Sbjct: 238 EHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPM 297

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
           +SMKV+ EM+  G +P+   Y +L+ ++A+ G  + A  +++EM+ AG  P+   +  ++
Sbjct: 298 SSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 357

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           E+++++G    A  IF+ M+  G  P  ++Y+ L++ +  +G  + A  ++  +   G+ 
Sbjct: 358 EAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMS 417

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P + ++  LL   A+        +++ ++   G + D  A + ++  Y + G +D   R 
Sbjct: 418 PTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERL 477

Query: 537 LRFM---GSSGIRTNNFIV 552
              M   G + + T N  V
Sbjct: 478 FAAMERRGDADVGTYNVAV 496



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 143/291 (49%), Gaps = 1/291 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   YN+L+  +  K    KA  IY ++ + +C     TY L++ +   +G L  A  + 
Sbjct: 174 DIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVI 233

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM+E    P+  ++ + +D + KA   + +++VY  M+    R +   +  +I  Y KA
Sbjct: 234 SEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKA 293

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            +  +++++++EM+  G +PN   +T ++ + A+ G  + A  +F +M++AG  P    Y
Sbjct: 294 KQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAY 353

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+E ++ +G    A ++++ M   G  P  ++Y  L+    +  L + A  +  E+K 
Sbjct: 354 NALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQ 413

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            G S  + +  +L+  + + G+       +  +  SG+  + F +  +  +
Sbjct: 414 RGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNA 464



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 138/283 (48%), Gaps = 5/283 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLE 252
           VP ++ Y +L      +    G L   + ++ +  ++GI    + YN  +  L KA   E
Sbjct: 207 VPTEDTYALLLRAYCNA----GSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTE 262

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   ++++    C+ +T+++ +++ ++     P  + +++  M+   C  +  TY  ++
Sbjct: 263 KAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALV 322

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            + A+ G  + A ++F+EM++    P    + +L+++  +AG    + +++  MQ  G  
Sbjct: 323 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCE 382

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P    Y  L+++Y +AG  + A  +++E++  G  P      +++ +HA+SG       +
Sbjct: 383 PDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEV 442

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
              + ++G  P     + +L  +A +G++D   +L+ +M   G
Sbjct: 443 MAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRG 485



 Score = 40.4 bits (93), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 45/250 (18%), Positives = 102/250 (40%), Gaps = 4/250 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           +Q+ + P    Y  L +  + +    G   +F  M H   +      ++YN ++    +A
Sbjct: 342 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPD---RASYNILVDAYGRA 398

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
              E +   F+++         +S+ +L+      G   +  E+   + K   + D    
Sbjct: 399 GLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFAL 458

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             M+ + A++GRLD   +LF  M ER        +   V++ G+AG +      +  +  
Sbjct: 459 NAMLNAYARAGRLDDMERLFAAM-ERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAA 517

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G       + + + +YA+  +    + + +EM  AG  P+ G   +++ + +   +++ 
Sbjct: 518 RGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQ 577

Query: 429 AMSIFTDMER 438
             +I   M +
Sbjct: 578 VTAIVRSMHK 587


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 149/323 (46%), Gaps = 14/323 (4%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K D  +YN LM  + ++   ++A E++  M K     D   Y ++I    K+  +D A+ 
Sbjct: 297 KPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMV 356

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           LF+E+  +N  P+   + SL+D +  +GR+    K+  EM G    P    Y  LI++  
Sbjct: 357 LFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALC 416

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K G++  AL +   M   G +PN   +  +++ +     +++A  IF  M ++G  P   
Sbjct: 417 KEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDIL 476

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            Y+ L+  +  +  VD A+ L+  M    L P +++Y +L+  L     +    ++L EM
Sbjct: 477 NYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEM 536

Query: 507 KTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI----RTNNFIVRQLF----- 556
              G S DV   ++L+  + K    D A+   R +   GI     TN+ IV  L      
Sbjct: 537 CDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIVDNLCKGEKL 595

Query: 557 ---ESCMKNALYESAKPLLETYV 576
              E  +K+ L     P ++TY 
Sbjct: 596 KMAEDALKHLLMHGCSPNVQTYT 618



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 177/412 (42%), Gaps = 41/412 (9%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +SLF ++        I+ F+    +I           ++     +L S  + +  ++N +
Sbjct: 75  ISLFTQLQSKGISPSIATFTI---LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTI 131

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  F   G+ +KA +  +++       D  TY  +I  L+K+G++ AA+ L QEM++ + 
Sbjct: 132 INGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSV 191

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P+  ++++L+D + K G +  ++ +  ++   G    A  Y SLI+     G+     +
Sbjct: 192 QPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQ 251

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L  +M      P+   F ++I++  K G++  A  +   M + G  P   TY+ L+E + 
Sbjct: 252 LLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYC 311

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA----------------- 499
           S   V  A +L+N M   GL P +  Y  L+    K K+VD A                 
Sbjct: 312 SRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIA 371

Query: 500 ------------------AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFM 540
                              K+L EM       DV   ++L+    K+G +  AL  L  M
Sbjct: 372 SYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMM 431

Query: 541 GSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              G++ N      + +  C++N +   AK +    V+S  + D++ Y  ++
Sbjct: 432 MKKGVKPNIVTYNAMMDGYCLRNNV-NVAKDIFNRMVKSGLEPDILNYNVLI 482



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 156/367 (42%), Gaps = 2/367 (0%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           DG +S    +     + GI L +  YN +I       + +       K++  +   D  +
Sbjct: 208 DGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYT 267

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +N+L+     +G   +A  +   M K     D  TY  ++        +  A +LF  M 
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMV 327

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +R   P    +  L+D   K   +D +M ++ E+      P+   Y SLI+    +G++ 
Sbjct: 328 KRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRIS 387

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
              +L DEM  +   P+   + ++I++  K G++  A+ +   M + G  P   TY+ ++
Sbjct: 388 HVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMM 447

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           + +     V+ A  ++N M  +GL P +  Y  L+    K ++VD A  +  EM+     
Sbjct: 448 DGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLI 507

Query: 513 VDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D+++ + L+  + + G + H    L  M  SG   +      L ++  K   ++ A  L
Sbjct: 508 PDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISL 567

Query: 572 LETYVES 578
               VE 
Sbjct: 568 FRQIVEG 574



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 144/333 (43%), Gaps = 5/333 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++ LF+    ++  VP    Y  L D L  S     +  L DEM H S++    +   
Sbjct: 352 DEAMVLFKELCNKNL-VPTIASYNSLIDGLCNSGRISHVKKLLDEM-HGSAQPPDVV--T 407

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  L K  ++  +      ++    K +  +YN +M  +  +     A +I+  M 
Sbjct: 408 YNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMV 467

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K     D   Y ++I    K+  +D AI LF+EM+ +N  P    + SL+D +   GR+ 
Sbjct: 468 KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIP 527

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              ++  EM   G  P    Y  L++++ K    D A+ L+ ++ + G  P+F     I+
Sbjct: 528 HVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIV 586

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           ++  K  KL +A      +   G  P   TY+ L+      G    AM L + M      
Sbjct: 587 DNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRP 646

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           P   T+  ++ +L +R   D A K+  EM   G
Sbjct: 647 PDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 120/572 (20%), Positives = 213/572 (37%), Gaps = 70/572 (12%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           M+F  L+  ++      LFD+  + +  NG+S        +  L + +K           
Sbjct: 140 MIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEK----------- 188

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
             S  + +   Y+ L+      G    A  +   + +    LD  TY  +I      GR 
Sbjct: 189 --SSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRW 246

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
               +L  +M   N  P    F  L+D++ K GR+  +  V   M   G +P    Y +L
Sbjct: 247 QEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           +E Y     +  A  L++ M   G  P+   + ++I+ + K+  +D AM +F ++     
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 442 LPTPSTYSCLL-----------------EMHASS------------------GQVDSAMK 466
           +PT ++Y+ L+                 EMH S+                  G++  A+ 
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YI 525
           +   M   G++P + TY A++     R  V+VA  I   M   G   D+   +VL+  Y 
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYC 486

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           K   VD A+   + M    +  +      L +           + LL+   +S    D++
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 586 LYTSVLAHLVRCQDEQNE----RHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVRE 641
            Y  +L    + Q         R ++  +    +  HA +  L  G E+ K    +    
Sbjct: 547 TYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKG-EKLKMAEDALKHL 605

Query: 642 FFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWS 701
             HG    ++         +L+N L   G    A  +     +N   P AI F+  I   
Sbjct: 606 LMHGCSPNVQT------YTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVL 659

Query: 702 LDVRNLSVGAALIAVMHTLHRFRKRMLYYGVV 733
           L  RN +  A          + R+ M+  G+V
Sbjct: 660 LQ-RNETDKA---------EKLREEMIARGLV 681



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 117/277 (42%), Gaps = 11/277 (3%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +D A+  F  M      P  ++F  L+ ++ + G   T++ ++ ++Q  G  PS   +  
Sbjct: 36  VDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI  Y        A  L   +  +G++PN   F  II     +G +  A+    ++   G
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           +L    TY  L+   + +GQ+ +A+ L   M  + ++P L  Y+AL+  L K   V  A 
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW------LRFMGSSGIRTNNFIVRQ 554
            +  ++   G  +D    + L+    DG      RW      L  M    +  +++    
Sbjct: 216 GLCSQIGERGILLDAVTYNSLI----DGCCSVG-RWQEVTQLLTKMVRENVDPDDYTFNI 270

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           L ++  K      A+ +L    +   K D+V Y +++
Sbjct: 271 LIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/354 (18%), Positives = 139/354 (39%), Gaps = 10/354 (2%)

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
           CF +++       T  ++ L+   +  G    A  ++  ++    S   +T+ ++I    
Sbjct: 42  CFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYF 101

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
                  A  L   + +  ++P+   F ++++     G +  ++     +   G+     
Sbjct: 102 HQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQF 161

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +LI   +K G++  AL L  EM  +  +PN  +++ +I+   K G +  A+ + + +
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G L    TY+ L++   S G+     +L   M    + P   T+  L+  L K   +
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
             A  +L  M   G   D+   + LM  Y    +V  A      M   G+  +      L
Sbjct: 282 LEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVL 341

Query: 556 FESCMKNALYESA---------KPLLETYVESAAKVDLVLYTSVLAHLVRCQDE 600
            +   K  + + A         K L+ T     + +D +  +  ++H+ +  DE
Sbjct: 342 IDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDE 395



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 27/197 (13%)

Query: 155 LDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFD 214
           +D L  + ++ H+ + L  + DS  S              P    Y +L D   +++ FD
Sbjct: 517 IDGLCNLGRIPHVQELLDEMCDSGQS--------------PDVITYNILLDAFCKTQPFD 562

Query: 215 GMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
             +SLF ++V      GI   F   + ++  L K +KL+M+    K +L   C  + Q+Y
Sbjct: 563 KAISLFRQIVE-----GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTY 617

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM-- 331
            +L+      G   +A  +   ME  +   D  T+E++I  L +    D A KL +EM  
Sbjct: 618 TILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIA 677

Query: 332 -----KERNFRPSFNIF 343
                 E++   S N+F
Sbjct: 678 RGLVNIEKSLNQSHNVF 694


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 157/317 (49%), Gaps = 1/317 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I++L K  +   ++   KK  +    + T SYN L+   +++ L   A E++  M++  
Sbjct: 40  IIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLG 99

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           C  D  TY L++ ++ KS R++  +K+ +EM  + ++ ++  + +++  + K+  LD ++
Sbjct: 100 CDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAI 159

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            +Y ++   G  P+   Y  L++   K G ++ A  L+DEM   G  PN  ++ +++  +
Sbjct: 160 NLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGY 219

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
             +G  +    +F  M   G  P   +Y+ +++   + G+++  +  +  +T  GL P L
Sbjct: 220 RIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDL 279

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRF 539
            TY  L+  L K   ++ A  +  +M+  G + ++   + L++Y+ K G    A +    
Sbjct: 280 ITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEE 339

Query: 540 MGSSGIRTNNFIVRQLF 556
           + + G + N F    L 
Sbjct: 340 LLAKGWKPNVFTYNALI 356



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 4/309 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +  LF   KR     P +  Y ++ D + +S   + ML + +EM +   K   S +  
Sbjct: 86  DIAEELFSEMKRLGC-DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYK---STYVT 141

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  L K+  L+ +   + +++         +Y  L+   L  G    A  +++ M 
Sbjct: 142 YNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEML 201

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +  C  + + Y +++     +G  +   +LF+ M E+   P    +  ++D++   GRL+
Sbjct: 202 ECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLN 261

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             +  + ++   G  P    Y  LI    K+G+L+ AL L+++M   G  PN   +  +I
Sbjct: 262 DGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLI 321

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               K+GK   A  ++ ++   G+ P   TY+ L+  ++ SG  ++A   Y  M   G R
Sbjct: 322 LYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCR 381

Query: 478 PGLSTYTAL 486
           P  STY  L
Sbjct: 382 PNSSTYMQL 390



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 137/326 (42%), Gaps = 1/326 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           S + LM   L +    K+ E  E++      LD      +I  L K     AA +L ++ 
Sbjct: 1   SVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKF 60

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           +          + +L+  +     +D + +++ EM+  G  P    Y  ++++  K+ ++
Sbjct: 61  ENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRI 120

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           +  L++ +EM   G++  +  +  II    KS  LD A++++  +   GF PTP TY  L
Sbjct: 121 EDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPL 180

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           L+     G ++ A  L++ M   G  P  + Y  LL         +   ++   M   G 
Sbjct: 181 LDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGM 240

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           + D+ +  V++     DG ++  L + + +   G+  +      L     K+   E A  
Sbjct: 241 NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALS 300

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           L     +     +L  Y S++ +L +
Sbjct: 301 LYNDMEKKGIAPNLYTYNSLILYLGK 326


>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
          Length = 630

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 162/334 (48%), Gaps = 6/334 (1%)

Query: 191 SW-YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +W  VP    Y  +   L ++   +  ++L  EMV D    G+    A+N V++ + +A 
Sbjct: 190 AWNLVPDKFTYSTVVSALADAGCVEEAVALVHEMVVD----GVVSAEAFNPVLKAMLRAG 245

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            +  +   F+ +    C +   +YNVL+   L  G    A  I   ME         TY 
Sbjct: 246 DVNGAVKLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYG 305

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++  L K GR++ A K+ QEM  +   PS  +F++++    K+G +D ++ V+  M   
Sbjct: 306 AVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAA 365

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
             +P+  +Y ++I+ +A++G++  A +L++EM  A   PN   ++ ++  +        A
Sbjct: 366 RVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRA 425

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           +S + +M + G +PT  +YS L+      G++  AM ++ +M   G  P    YT+++  
Sbjct: 426 LSTWEEMIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKG 485

Query: 490 LAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLM 522
           L    +VD   ++  +M   G +  DV + +VL+
Sbjct: 486 LCMSGMVDGGLRLFNDMLAKGDAKPDVISYNVLL 519



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 147/308 (47%), Gaps = 2/308 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ V+  LA A  +E +     +++  D  +  +++N ++   L  G    A +++  M+
Sbjct: 200 YSTVVSALADAGCVEEAVALVHEMV-VDGVVSAEAFNPVLKAMLRAGDVNGAVKLFRFMQ 258

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C+L   TY +++  L   G   AA+ + + M+     P    + ++VD + K GR++
Sbjct: 259 LKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGRVE 318

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + KV  EM G G  PS  ++ ++I  + K+G++D AL +W+ M  A  +PN  L++ +I
Sbjct: 319 DAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKPNVVLYSAMI 378

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +  A+SG++  A  +F +M  A  +P   TYS ++  +        A+  +  M   G  
Sbjct: 379 DGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCV 438

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   +Y+ L++ L     +  A  +   M   G + D  A   +M  +   G VD  LR 
Sbjct: 439 PTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGLRL 498

Query: 537 LRFMGSSG 544
              M + G
Sbjct: 499 FNDMLAKG 506


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 111/503 (22%), Positives = 208/503 (41%), Gaps = 78/503 (15%)

Query: 27  FHSNFIHHLDFNHKFIKNTSFSSRLDYGET---QNFVKDAIFFRKPNYVRSYCSGKSGDG 83
           F SN   HL    K ++N      L + E    Q  + D I     + +R +C  +SG  
Sbjct: 107 FASNI--HL---RKLVRNGELEEGLKFLERMIYQGDIPDVIAC--TSLIRGFC--RSG-- 155

Query: 84  EKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVN 143
            K  + T  +E L+ SG+V                +V++GG    +  +  + K +EV+ 
Sbjct: 156 -KTKKATRIMEILENSGAVPDV----------ITYNVLIGG----YCKSGEIDKALEVLE 200

Query: 144 RWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVML 203
           R    P++ T    L+ +     + +A++V++         R  +R+ +  P    Y +L
Sbjct: 201 RMSVAPDVVTYNTILRSLCDSGKLKEAMEVLD---------RQLQRECY--PDVITYTIL 249

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM---------S 254
            +           + L DEM     K  +     YN +I  + K  +L+          S
Sbjct: 250 IEATCNDSGVGQAMKLLDEMRKKGCKPDVV---TYNVLINGICKEGRLDEAIKFLNNMPS 306

Query: 255 YCCFKKVLDSD--------------------------CKIDTQSYNVLMTLFLNKGLPYK 288
           Y C   V+  +                          C     ++N+L+     K L  +
Sbjct: 307 YGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGR 366

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A ++ E M K  C  +  +Y  ++    +  ++D AI+  + M  R   P    + +L+ 
Sbjct: 367 AIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLT 426

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
           ++ K G++D ++++  ++   G  P    Y ++I+   K GK + A+ L +EMR  G +P
Sbjct: 427 ALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKP 486

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +   ++ ++    + GK+D A+ IF DME     P+  TY+ ++     + Q   A+   
Sbjct: 487 DIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFL 546

Query: 469 NSMTSAGLRPGLSTYTALLTLLA 491
             M   G +P  +TYT L+  +A
Sbjct: 547 AYMVEKGCKPTEATYTILIEGIA 569



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 145/329 (44%), Gaps = 4/329 (1%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YNVL+  +   G   KA E+ E M     + D  TY  ++ SL  SG+L  A+++ 
Sbjct: 175 DVITYNVLIGGYCKSGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVL 231

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
               +R   P    +  L+++      +  +MK+  EM+  G +P    Y  LI    K 
Sbjct: 232 DRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKE 291

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+LD A++  + M   G +PN     +I+ S   +G+   A  + +DM R G  P+  T+
Sbjct: 292 GRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTF 351

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+        +  A+ +   M   G  P   +Y  LL    + K +D A + L  M +
Sbjct: 352 NILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS 411

Query: 509 MGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D+   + L+  + KDG VD A+  L  + S G          + +   K    E 
Sbjct: 412 RGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEY 471

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           A  LLE       K D++ Y+++L  L R
Sbjct: 472 AVELLEEMRRKGLKPDIITYSTLLRGLGR 500



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 148/329 (44%), Gaps = 4/329 (1%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +   L+  F   G   KA  I E +E      D  TY ++I    KSG +D A+++ 
Sbjct: 140 DVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVL 199

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           + M   +  P    + +++ S+  +G+L  +M+V          P    Y  LIE+    
Sbjct: 200 ERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCND 256

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
             +  A++L DEMR  G +P+   + ++I    K G+LD A+    +M   G  P   T+
Sbjct: 257 SGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITH 316

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + +L    S+G+   A +L + M   G  P + T+  L+  L +++L+  A  +L +M  
Sbjct: 317 NIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPK 376

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   + +S + +L  + ++  +D A+ +L  M S G   +      L  +  K+   ++
Sbjct: 377 HGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDA 436

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           A  +L           L+ Y +V+  L +
Sbjct: 437 AVEILNQLSSKGCSPVLITYNTVIDGLTK 465



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 119/265 (44%), Gaps = 6/265 (2%)

Query: 335 NFRPSFNIFASLVD--SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           N   SF  FAS +    + + G L+  +K    M   G  P      SLI  + ++GK  
Sbjct: 99  NGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTK 158

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A R+ + +  +G  P+   + ++I  + KSG++D A+ +   +ER    P   TY+ +L
Sbjct: 159 KATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEV---LERMSVAPDVVTYNTIL 215

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
                SG++  AM++ +        P + TYT L+        V  A K+L EM+  G  
Sbjct: 216 RSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCK 275

Query: 513 VDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            DV   +VL+  I K+G +D A+++L  M S G + N      +  S      +  A+ L
Sbjct: 276 PDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERL 335

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
           L   +       +V +  ++  L R
Sbjct: 336 LSDMLRKGCSPSVVTFNILINFLCR 360


>gi|302810233|ref|XP_002986808.1| hypothetical protein SELMODRAFT_41291 [Selaginella moellendorffii]
 gi|300145462|gb|EFJ12138.1| hypothetical protein SELMODRAFT_41291 [Selaginella moellendorffii]
          Length = 587

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 186/414 (44%), Gaps = 46/414 (11%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM---VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
           Y  +   L ++  F+ M  L +EM    H     GI     ++ VI+   +A  ++ +  
Sbjct: 3   YARVIVGLAKAWQFEQMWDLMEEMDKRAHLHIPAGI-----FSTVIKCYGRAGDVKGAVA 57

Query: 257 CFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
             K++ D   C    ++Y  L+ + ++ G    A  +Y +M       D  TY L+    
Sbjct: 58  TLKRMSDDFSCTPVARTYEALIRVVMDAGQCDTALSVYRAMA------DRVTYNLVALGC 111

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
            +SGRLD  ++++QEM+ R FR S   F SLV  + KAGR D +  V  +      RPSA
Sbjct: 112 CRSGRLDTCVEIYQEMRSRGFRVSHLAFNSLVCGLCKAGRTDEAWDVLGK-----SRPSA 166

Query: 376 ---PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
               + +S +     +   D AL L   M+     PN   +T +I+   K+G+ D AM +
Sbjct: 167 CADAVTLSTVIHALCSSDCDRALELMRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVL 226

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M+ AG  P   TY+CL+     +G+++ A  L  SM S G  P ++    L++ + K
Sbjct: 227 LQQMQAAGCSPNTVTYNCLIHSLCKAGKLEDAFALLRSMPSKGCTPSINNKNTLVSGICK 286

Query: 493 RKLVDVAAKILLEM------KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG-- 544
             +++   +   ++      + M  S  V    + ++Y     ++H        GS+G  
Sbjct: 287 HAIMERQRREFGKLGQALFSEAMQESCSVEEDTLALLYT---CLEH------MFGSNGDR 337

Query: 545 --IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              RT + ++  L   C  + + E+A+ +    V+   + D V Y S L  L++
Sbjct: 338 PDKRTYSIVIHFL---CKADKVLEAAR-VWRAMVKRLGQADAVTYNSFLYGLLK 387



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 155/365 (42%), Gaps = 41/365 (11%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGIS 233
           +D D +L L R  + Q    P    Y  + D L ++   D  + L  +M     S N ++
Sbjct: 183 SDCDRALELMRAMQAQR-VPPNVVTYTSVIDGLCKAGRRDAAMVLLQQMQAAGCSPNTVT 241

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF------------- 280
               YN +I  L KA KLE ++   + +    C     + N L++               
Sbjct: 242 ----YNCLIHSLCKAGKLEDAFALLRSMPSKGCTPSINNKNTLVSGICKHAIMERQRREF 297

Query: 281 --LNKGLPYKAFEIYESMEKGECSL----------------DGSTYELMIPSLAKSGRLD 322
             L + L  +A +   S+E+   +L                D  TY ++I  L K+ ++ 
Sbjct: 298 GKLGQALFSEAMQESCSVEEDTLALLYTCLEHMFGSNGDRPDKRTYSIVIHFLCKADKVL 357

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A ++++ M +R  +     + S +  + K   L  + +++ E+     +P+   Y  L+
Sbjct: 358 EAARVWRAMVKRLGQADAVTYNSFLYGLLKLNNLSEAARLFSEID----KPTLVSYSLLV 413

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
            +Y KAG L     ++      G RP+  L+ +++   + + +      ++ +M   G  
Sbjct: 414 HAYFKAGDLSKVEEVYQAATGQGLRPDLALYNIVLHGLSGAKQEAGVAHLWAEMLNNGVS 473

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P+ +TY+ L+       ++ +A ++ + M   G+ P   TY  LL  L K +L+D A  +
Sbjct: 474 PSVATYTILIHALCRDNRLQAARQIIDKMKGQGVLPDAITYNTLLHCLCKNELLDEAHLL 533

Query: 503 LLEMK 507
           L EMK
Sbjct: 534 LREMK 538



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 109/274 (39%), Gaps = 39/274 (14%)

Query: 249 DKLEMSYCCFKKVLDSDC-KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307
           D L + Y C + +  S+  + D ++Y++++          +A  ++ +M K     D  T
Sbjct: 318 DTLALLYTCLEHMFGSNGDRPDKRTYSIVIHFLCKADKVLEAARVWRAMVKRLGQADAVT 377

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y   +  L K   L  A +LF E+     +P+   ++ LV +  KAG L    +VY    
Sbjct: 378 YNSFLYGLLKLNNLSEAARLFSEID----KPTLVSYSLLVHAYFKAGDLSKVEEVYQAAT 433

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
           G G RP   +Y  ++   + A +      LW EM   G  P+   +T++I +  +  +L 
Sbjct: 434 GQGLRPDLALYNIVLHGLSGAKQEAGVAHLWAEMLNNGVSPSVATYTILIHALCRDNRLQ 493

Query: 428 IAMSIFTDMERAGFLP----------------------------------TPSTYSCLLE 453
            A  I   M+  G LP                                  TP+T++ +++
Sbjct: 494 AARQIIDKMKGQGVLPDAITYNTLLHCLCKNELLDEAHLLLREMKQHCSYTPATWNIVID 553

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
                  +  A ++++ +   G  P   TY A +
Sbjct: 554 GILEQRDLGVAQRIFSQLIRDGFFPAHLTYDAFV 587



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 92/430 (21%), Positives = 168/430 (39%), Gaps = 54/430 (12%)

Query: 290 FEIYESMEK-GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLV 347
           +++ E M+K     +    +  +I    ++G +  A+   + M +  +  P    + +L+
Sbjct: 20  WDLMEEMDKRAHLHIPAGIFSTVIKCYGRAGDVKGAVATLKRMSDDFSCTPVARTYEALI 79

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
             +  AG+ DT++ VY  M           Y  +     ++G+LDT + ++ EMR  GFR
Sbjct: 80  RVVMDAGQCDTALSVYRAM------ADRVTYNLVALGCCRSGRLDTCVEIYQEMRSRGFR 133

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
            +   F  ++    K+G+ D A  +     R        T S ++    SS   D A++L
Sbjct: 134 VSHLAFNSLVCGLCKAGRTDEAWDVLGK-SRPSACADAVTLSTVIHALCSS-DCDRALEL 191

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIK 526
             +M +  + P + TYT+++  L K    D A  +L +M+  G S +    + L+    K
Sbjct: 192 MRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVLLQQMQAAGCSPNTVTYNCLIHSLCK 251

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
            G ++ A   LR M S G   +      L     K+A+ E  +           K+   L
Sbjct: 252 AGKLEDAFALLRSMPSKGCTPSINNKNTLVSGICKHAIMERQR-------REFGKLGQAL 304

Query: 587 YTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQR-KQPVLSFVREFFHG 645
           ++  +     C  E++   L  + +  +H        +F     R  +   S V  F   
Sbjct: 305 FSEAMQE--SCSVEEDT--LALLYTCLEH--------MFGSNGDRPDKRTYSIVIHFLCK 352

Query: 646 IDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVR 705
            D  LE  AAR                     VW+   +      A+ ++  +   L + 
Sbjct: 353 ADKVLE--AAR---------------------VWRAMVKRLGQADAVTYNSFLYGLLKLN 389

Query: 706 NLSVGAALIA 715
           NLS  A L +
Sbjct: 390 NLSEAARLFS 399


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  K   + VP D C  +L + L + + F  +   ++E +       +  F   N
Sbjct: 85  AIECYRLIKEHKFRVPFDTCRKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K  ++ ++   F  +     +    S+N LM  ++  G   + F +  +M+  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K+ ++D A +LF EM +    P+   F +L+D   K  R+D +
Sbjct: 201 GVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + K G L+ A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           + TYT ++    ++  V    K+L EM+  GY
Sbjct: 381 IGTYTMIINEFCEKGDVWTGLKLLKEMQRDGY 412



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 146/324 (45%), Gaps = 1/324 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y  +++ +  +   T   ++  L K          +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLIKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E  E  +  S   F  L+ S  K G +  +  V+  +     RPS   + +L+  Y K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL + M+ +G + +   ++++I    K+ K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  + +VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G ++ A  + + M    IR ++     L     +      
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVL 591
           A+ +L   +    K ++  YT ++
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMII 388



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 146/319 (45%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++ +KE  FR  F+    +++ + K     
Sbjct: 59  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLIKEHKFRVPFDTCRKVLEHLMKLKYFK 118

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E   CG+  S   +  L+ S+ K G++  A  ++D +     RP+   F  ++
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K G LD    +   M+ +G      TYS L+     + ++D A +L++ M   GL 
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLV 238

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K + VDVA +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 239 PNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ +      L +   K    E+A    +  ++   ++D V YT++++ L  
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL-- 356

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 357 CQEGRSVDAEKMLREMLSV 375


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 126/255 (49%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C     ++N+L+     KGL  +A ++ E M K  C+ +  +Y  ++    K  +++ AI
Sbjct: 185 CSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAI 244

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +   +M  R   P    + +L+ ++ K G++D ++++  ++   G  P    Y ++I+  
Sbjct: 245 EYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 304

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
           +K GK D A +L DEMR  G +P+   ++ ++   ++ GK+D A+  F D+E  G  P  
Sbjct: 305 SKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNA 364

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ ++     + + D A+     M   G +P  ++YT L+  LA   L   A ++L E
Sbjct: 365 ITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNE 424

Query: 506 MKTMGYSVDVSASDV 520
           +   G     SA  V
Sbjct: 425 LCLRGVVKKSSAEKV 439



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 119/240 (49%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I +L +   L  +    +K+    C  ++ SYN L+  F  +    +A E    M
Sbjct: 191 TFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKM 250

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D  TY  ++ +L K G++DAA++L  ++  +   P    + +++D + K G+ 
Sbjct: 251 TSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKT 310

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + K+  EM+  G +P    Y SL+   ++ GK+D A++ + ++ + G +PN   +  I
Sbjct: 311 DQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAI 370

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K+ K D A+     M + G  PT ++Y+ L+E  A  G    A++L N +   G+
Sbjct: 371 MLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGV 430



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 137/298 (45%), Gaps = 1/298 (0%)

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+  F   G   KA  I E +E      D  TY ++I  +  +GR   A KL  +M  R 
Sbjct: 125 LIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRG 184

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             PS   F  L++ + + G L  ++ V  +M   G  P++  Y  L+  + K  K++ A+
Sbjct: 185 CSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAI 244

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
               +M   G  P+   +  ++ +  K GK+D A+ +   +   G  P   TY+ +++  
Sbjct: 245 EYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 304

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           +  G+ D A KL + M + GL+P + TY++L+  L++   VD A K   +++ +G   + 
Sbjct: 305 SKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNA 364

Query: 516 SASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
              + +M+ + K    D A+ +L +M   G +        L E      L + A  LL
Sbjct: 365 ITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELL 422



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 1/255 (0%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFK 259
           V+ F++L       G+L    +++    K+G +  S +YN ++    K  K+E +     
Sbjct: 189 VVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLG 248

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+    C  D  +YN L+T     G    A E+   +    CS    TY  +I  L+K G
Sbjct: 249 KMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVG 308

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           + D A KL  EM+ +  +P    ++SLV  + + G++D ++K + +++  G +P+A  Y 
Sbjct: 309 KTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYN 368

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +++    KA K D A+     M   G +P    +T++IE  A  G    A+ +  ++   
Sbjct: 369 AIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLR 428

Query: 440 GFLPTPSTYSCLLEM 454
           G +   S     + M
Sbjct: 429 GVVKKSSAEKVAVRM 443



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 1/246 (0%)

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           + G L+   +    M   G  P      SLI  + K GK   A R+ + +  +G  P+  
Sbjct: 96  RNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVI 155

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            + ++I     +G+   A  +  DM R G  P+  T++ L+      G +  A+ +   M
Sbjct: 156 TYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKM 215

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSV 530
              G  P   +Y  LL    K K ++ A + L +M + G   D+   + L+  + KDG V
Sbjct: 216 PKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKV 275

Query: 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
           D A+  L  + S G          + +   K    + A  LL+       K D++ Y+S+
Sbjct: 276 DAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSL 335

Query: 591 LAHLVR 596
           +  L R
Sbjct: 336 VGGLSR 341


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/427 (22%), Positives = 185/427 (43%), Gaps = 13/427 (3%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           + DS  S ++F +    ++Y  G            ++ D      + +EM  +     + 
Sbjct: 239 LKDSGPSPNVFTYTIMMNYYCKGS---------FGKNIDIVKATEVLEEMEMNGESPTVV 289

Query: 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
            + AY   I  L +A  +E +    + +   +  +++  YN ++  F   G  ++AFE+ 
Sbjct: 290 TYGAY---IHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELL 346

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           E M     S    +Y ++I  L K G+++ A+ L +EM + N +PS   ++SL D + K+
Sbjct: 347 EDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKS 406

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G  + S+ ++  +   G++     Y +LI  +     + +A +L  EMR+ G  PN   F
Sbjct: 407 GLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTF 466

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +I    K  +LD A+ +FT M + G      T + + +     G    A+KL N +  
Sbjct: 467 NRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQD 526

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKIL-LEMKTMGYSVDVSASDVLMVYIKDGSVDH 532
            G+ P   TY  ++  L K +  + A ++L + +K   +   +  + ++  Y K  +   
Sbjct: 527 LGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTK 586

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           AL     M   GI  +      L       +  + A  L +  ++     D +++T ++A
Sbjct: 587 ALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIA 646

Query: 593 HLVRCQD 599
              +  D
Sbjct: 647 GFCKVGD 653



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 144/319 (45%), Gaps = 10/319 (3%)

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           NVL+ +F    +   A +++    +    L+  +   ++   A++ + +    LF+E+K+
Sbjct: 182 NVLIKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFEELKD 241

Query: 334 RNFRPSFNIFASLV-------DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
               PS N+F   +        S GK   +  + +V  EM+  G  P+   Y + I    
Sbjct: 242 SG--PSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLC 299

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           +AG ++ ALRL  ++RI     N   +  +I    ++G+L  A  +  DM   G  PT  
Sbjct: 300 RAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAY 359

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           +YS L++     GQV+ A+ L   M  + ++P L TY++L   L K  L +++  +   +
Sbjct: 360 SYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNL 419

Query: 507 KTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
              GY  DV + + L+  ++    +  A + +  M  +G   N+F   +L     K    
Sbjct: 420 GAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRL 479

Query: 566 ESAKPLLETYVESAAKVDL 584
           + A  +    ++   ++++
Sbjct: 480 DKALEVFTIMLKVGVQLNI 498



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 140/305 (45%), Gaps = 1/305 (0%)

Query: 222 EMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           ++VH+   NG    S  +NR+I    K  +L+ +   F  +L    +++  + N++   F
Sbjct: 449 KLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEF 508

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
             +G  ++A ++   ++      +  TY ++I  L K  + + A ++   M + N  P  
Sbjct: 509 NREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCA 568

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             + +L+D   K      ++ +Y +M   G  PS   Y  LI  ++   K+  A  L+ E
Sbjct: 569 IHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKE 628

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M   G  P+  +FT II    K G +  A +++ +M + G  P   TY+CL++ +    +
Sbjct: 629 MIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKR 688

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           +D A  L+N M    + P   TYTAL+         D   ++  EMK  G   + +A   
Sbjct: 689 MDKADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMKENGVFPNYTAYAT 748

Query: 521 LMVYI 525
           L +++
Sbjct: 749 LGLHL 753



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI+ +A+   L  A  ++ + R  G   N      ++   A++ + +   S+F +++ +G
Sbjct: 184 LIKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFEELKDSG 243

Query: 441 FLPTPSTYSCLLEMHASSG-----QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
             P   TY+ ++  +          +  A ++   M   G  P + TY A +  L +   
Sbjct: 244 PSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLCRAGC 303

Query: 496 VDVAAKILLEMKTMGYSVDVSASD-VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
           V+ A +++ +++     ++    + V+  + ++G +  A   L  M S GI    +    
Sbjct: 304 VEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSI 363

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L +   K    E A  L+E  V+S  K  LV Y+S+   L +
Sbjct: 364 LIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCK 405


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 118/528 (22%), Positives = 219/528 (41%), Gaps = 35/528 (6%)

Query: 216 MLSLFDEMVH-DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           +LSL+  MVH D        FS   R +  L +AD+   +    + +    C  DT  Y 
Sbjct: 155 VLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADE---ALTMLRSMARHGCVPDTVLYQ 211

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            ++     +G   +A  + + M    CS D +T+  ++  L   GRL  A +L   M  R
Sbjct: 212 TVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIR 271

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
              P+   +  L+  +  A +++ +      M G     +  ++ ++I      GKL  A
Sbjct: 272 GCVPNAITYGFLLKGLCLASQVEEART----MLGRVPELNVVLFNTVIGRCLLDGKLKEA 327

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             L++ M   G  P+   ++++I    K G+L  AM +  +ME  GF P+  TY+ LL  
Sbjct: 328 AELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHS 387

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +G  D+   +   M+  GL   L  Y  ++  + K + +D A + + EMK+ GY  D
Sbjct: 388 FCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPD 447

Query: 515 VSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           +   + ++ ++  +  ++ A      +   G+  N      L  + ++N  ++ A  L  
Sbjct: 448 ICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLAN 507

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK-------AHAFLCGLFT 626
             V     +D+V Y  ++  L  C+D   +R +M +LS    K       ++  L     
Sbjct: 508 DMVLHGCSLDIVSYNGLIKAL--CRDGNVDRSIM-LLSEMAEKGIKPNNVSYNLLISELC 564

Query: 627 GPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENK 686
              +R +  L   +E    ++ EL      Y  N L+N L  MG ++ A  + +  +   
Sbjct: 565 -KTRRVRDALELSKEM---LNQELTPDIVTY--NTLINGLCKMGWMHAALNLLEKLHNED 618

Query: 687 LFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVP 734
           +    I ++  I+W    R          ++H       R +  G+ P
Sbjct: 619 VHADIITYNILISWHCKAR----------LLHDASMLLNRAVTSGITP 656



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 188/460 (40%), Gaps = 24/460 (5%)

Query: 152 ETQLDKLQFVPKMVH-------------ITQALKVINDSDTSLSLFRWAKRQSWYVPGDE 198
           +   D L    +MVH               +AL  +  +D +L++ R   R    VP   
Sbjct: 150 DCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGC-VPDTV 208

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
            Y  +   L      +   +L DEM        ++ F   N ++  L    +L  +    
Sbjct: 209 LYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTF---NDIVHGLCTLGRLREAARLV 265

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA-FEIYESMEKGECSLDGSTYELMIPSLAK 317
            +++   C  +  +Y      FL KGL   +  E   +M      L+   +  +I     
Sbjct: 266 DRMMIRGCVPNAITYG-----FLLKGLCLASQVEEARTMLGRVPELNVVLFNTVIGRCLL 320

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G+L  A +L++ M  +   P  + ++ L+  + K GRL ++MK+  EM+  G  PS   
Sbjct: 321 DGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVT 380

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  L+ S+ + G  D    + + M   G   N   +  +I +  K  ++D AM    +M+
Sbjct: 381 YTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMK 440

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G+ P   TY+ ++    ++ Q++ A  L+ ++   G+     TY  L+  L +     
Sbjct: 441 SQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQ 500

Query: 498 VAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  +  +M   G S+D VS + ++    +DG+VD ++  L  M   GI+ NN     L 
Sbjct: 501 DAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLI 560

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               K      A  L +  +      D+V Y +++  L +
Sbjct: 561 SELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCK 600



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/353 (20%), Positives = 154/353 (43%), Gaps = 2/353 (0%)

Query: 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYC 256
           E  V+LF+ +      DG L    E+       G    +  Y+ +I  L K  +L  +  
Sbjct: 305 ELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMK 364

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
             +++ D        +Y +L+  F   G+      + E M     S++   Y  MI ++ 
Sbjct: 365 LLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVC 424

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           K  R+D A++  QEMK + ++P    + +++  +    +++ +  ++  +   G   +A 
Sbjct: 425 KDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAI 484

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +LI +  + G    A+ L ++M + G   +   +  +I++  + G +D ++ + ++M
Sbjct: 485 TYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEM 544

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G  P   +Y+ L+     + +V  A++L   M +  L P + TY  L+  L K   +
Sbjct: 545 AEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWM 604

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDH-ALRWLRFMGSSGIRTN 548
             A  +L ++       D+   ++L+ +     + H A   L    +SGI  N
Sbjct: 605 HAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPN 657



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 120/288 (41%), Gaps = 17/288 (5%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           +I   L+V++D   S++L              E Y  +   + + R  D  +    EM  
Sbjct: 396 NIRAMLEVMSDKGLSMNL--------------EGYNGMICAVCKDRRMDDAMRFMQEMKS 441

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
              K  I     YN +I +L   +++E +   F+ +L      +  +YN L+   L  G 
Sbjct: 442 QGYKPDIC---TYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGS 498

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
              A  +   M    CSLD  +Y  +I +L + G +D +I L  EM E+  +P+   +  
Sbjct: 499 WQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNL 558

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+  + K  R+  ++++  EM      P    Y +LI    K G +  AL L +++    
Sbjct: 559 LISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNED 618

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
              +   + ++I  H K+  L  A  +      +G  P   T+  +++
Sbjct: 619 VHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWGIMVQ 666



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 132/330 (40%), Gaps = 35/330 (10%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           +Y  ++ + A++      + L++ M  R+   P+   F+    ++ + GR D ++ +   
Sbjct: 138 SYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADEALTMLRS 197

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G  P   +Y ++I +    G ++ A  L DEM + G   +   F  I+      G+
Sbjct: 198 MARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGR 257

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD----------------------- 462
           L  A  +   M   G +P   TY  LL+    + QV+                       
Sbjct: 258 LREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVLFNTVIGR 317

Query: 463 --------SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
                    A +LY +M S G  P   TY+ L+  L K   +  A K+L EM+  G++  
Sbjct: 318 CLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPS 377

Query: 515 VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           +    +L+  + ++G  D+    L  M   G+  N      +  +  K+   + A   ++
Sbjct: 378 IVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQ 437

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
                  K D+  Y +++ HL  C + Q E
Sbjct: 438 EMKSQGYKPDICTYNTIIYHL--CNNNQME 465



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 89/205 (43%), Gaps = 5/205 (2%)

Query: 219 LFDEMVHDSS-KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           LF+ ++H+    N I+    YN +I  L +    + +      ++   C +D  SYN L+
Sbjct: 470 LFENLLHEGVVANAIT----YNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLI 525

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
                 G   ++  +   M +     +  +Y L+I  L K+ R+  A++L +EM  +   
Sbjct: 526 KALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELT 585

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P    + +L++ + K G +  ++ +  ++           Y  LI  + KA  L  A  L
Sbjct: 586 PDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASML 645

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAK 422
            +    +G  PN   + +++++  +
Sbjct: 646 LNRAVTSGITPNERTWGIMVQNFVR 670



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 121/307 (39%), Gaps = 12/307 (3%)

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
           L+IP L +S     A+ L  ++  R    PSF  + +++ +  +A      + +Y  M  
Sbjct: 106 LLIP-LFRSLAPGRALHLLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMV- 163

Query: 369 CGHRPSAPMYVSLIESYAKA----GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
             HR   P         A+A    G+ D AL +   M   G  P+  L+  +I +    G
Sbjct: 164 --HRDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQG 221

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
            ++ A ++  +M   G     +T++ ++    + G++  A +L + M   G  P   TY 
Sbjct: 222 GVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYG 281

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544
            LL  L     V+ A  +L  +  +     V  + V+   + DG +  A      MGS G
Sbjct: 282 FLLKGLCLASQVEEARTMLGRVPELNV---VLFNTVIGRCLLDGKLKEAAELYETMGSKG 338

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
              +      L     K     SA  LL    +      +V YT +L    R     N R
Sbjct: 339 CPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIR 398

Query: 605 HLMAILS 611
            ++ ++S
Sbjct: 399 AMLEVMS 405


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 106/456 (23%), Positives = 187/456 (41%), Gaps = 54/456 (11%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           I   +  I D+ ++L L R  +  S  +P    Y  + D L +        +LF EM   
Sbjct: 225 IVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM--- 281

Query: 227 SSKNGI--SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
             + GI   LF+ YN +I     + +   +    +++L+     D  +YN L+  F+ +G
Sbjct: 282 -QEKGIFPDLFT-YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
             ++A E+Y+ M       +  TY  MI    K  RLDAA  +F  M  +   P+   F 
Sbjct: 340 KFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFN 399

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +L+D    A R+D  M++  EM   G       Y +LI  +   G L+ AL L  EM  +
Sbjct: 400 TLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISS 459

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA------------------------- 439
           G  P+      +++    +GKL  A+ +F  M+++                         
Sbjct: 460 GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILIS 519

Query: 440 ---------------------GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
                                G +P   TYS +++      ++D A ++++SM S    P
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP 579

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL 537
            + T+T L+    K   VD   ++  EM   G   + ++   ++  + K G+++ AL   
Sbjct: 580 NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIF 639

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           + M SSG+  +   +R +          + A  +LE
Sbjct: 640 QEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 173/420 (41%), Gaps = 45/420 (10%)

Query: 217 LSLFDEMVHDSSKNGISLFSAY-------NRVIQYLAKADK-----LEMSYCCFKKVLDS 264
           L+LF +M   + +  +  F+          R+++ +A  D+     L+ +   +  ++D 
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 265 DCKI-DTQS--------------------YNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303
            CKI DT S                    Y+ ++      G    A  ++  M++     
Sbjct: 229 MCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  TY  MI     SGR   A +L QEM ER   P    + +L+++  K G+   + ++Y
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELY 348

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            EM   G  P+   Y S+I+ + K  +LD A  ++  M   G  PN   F  +I+ +  +
Sbjct: 349 DEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA 408

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
            ++D  M +  +M   G +   +TY+ L+      G +++A+ L   M S+GL P + T 
Sbjct: 409 KRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTC 468

Query: 484 TALLTLLAKR-KLVDVAAKILLEMKTM----------GYSVDVSASDVLMV-YIKDGSVD 531
             LL  L    KL D      +  K+           G   DV   ++L+   I +G   
Sbjct: 469 DTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL 528

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A      M   GI  +      + +   K +  + A  + ++    +   ++V +T+++
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 133/291 (45%), Gaps = 14/291 (4%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I     A +++       ++ ++    DT +YN L+  F   G    A ++ + M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE-----------RNFRPSFNIFAS 345
                  D  T + ++  L  +G+L  A+++F+ M++               P    +  
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNI 516

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+  +   G+   + ++Y EM   G  P    Y S+I+   K  +LD A +++D M    
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
           F PN   FT +I  + K+G++D  + +F +M R G +    TY  L+      G ++ A+
Sbjct: 577 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            ++  M S+G+ P   T   +LT L  ++ +  A  +L +++    S+D+S
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ---MSMDLS 684



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 142/353 (40%), Gaps = 37/353 (10%)

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGE---------------CSL----------------- 303
           LM + +    P     +Y+ ME+ +               CS                  
Sbjct: 85  LMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLG 144

Query: 304 ---DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              D  T+  ++  L    R+  A+ LF +M E   RP+   F +L++ + + GR+  ++
Sbjct: 145 LHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAV 204

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM-RIAGFRPNFGLFTMIIES 419
            +   M   G +P+   Y ++++   K G   +AL L  +M  I+   PN  +++ II+S
Sbjct: 205 ALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDS 264

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G+   A ++FT+M+  G  P   TY+ ++    SSG+   A +L   M    + P 
Sbjct: 265 LCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD 324

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLR 538
           + TY AL+    K      A ++  EM   G   + ++ S ++  + K   +D A     
Sbjct: 325 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY 384

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            M + G   N      L +        +    LL    E+    D   Y +++
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 123/297 (41%), Gaps = 3/297 (1%)

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R D  I L+Q+M+ +  R     F  L+       +L  ++  + ++   G  P    + 
Sbjct: 94  RPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFN 153

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +L+       ++  AL L+ +M     RPN   FT ++    + G++  A+++   M   
Sbjct: 154 TLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS-AGLRPGLSTYTALLTLLAKRKLVDV 498
           G  PT  TY  +++     G   SA+ L   M   + + P +  Y+A++  L K      
Sbjct: 214 GLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSD 273

Query: 499 AAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A  +  EM+  G   D+   + ++V +   G    A + L+ M    I  +      L  
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALIN 333

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK 614
           + +K   +  A+ L +  +      + + Y+S++    + Q+  +    M  L ATK
Sbjct: 334 AFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRLDAAEHMFYLMATK 389



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 2/238 (0%)

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           L+ ++ ++ +M      PS   +  L+    +  + D  + L+ +M     R +   FT+
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+      KL  A+S F  + + G  P   T++ LL       +V  A+ L++ M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHAL 534
            RP + T+T L+  L +   +  A  +L  M   G     ++   ++    K G    AL
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL 239

Query: 535 RWLRFMGS-SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             LR M   S I  N  I   + +S  K+  +  A+ L     E     DL  Y S++
Sbjct: 240 DLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 156/342 (45%), Gaps = 4/342 (1%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I  L +   +E +   F+ ++    K +   Y  L+   + +G   +A  I + M+K  
Sbjct: 452 IINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKG 511

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              D   Y  +I  L KS +++ A     EM ER  +P+   + +L+    K+G +  + 
Sbjct: 512 VQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVAD 571

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           + + EM GCG  P+  +  +LI+ Y K G    A  ++  M      P+   ++ +I   
Sbjct: 572 RYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGL 631

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            ++GKL  AM + ++    G +P   TY+ ++      G +  A +L+  M   G+ P +
Sbjct: 632 LRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNI 691

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRF 539
            TY AL+  L K   ++ A ++   +   G + + V+ + ++  Y K G++  A R    
Sbjct: 692 ITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDE 751

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
           M   G+  ++F+   L + C K    E A   L  ++ES  K
Sbjct: 752 MTLKGVPPDSFVYSALIDGCRKEGNTEKA---LSLFLESVQK 790



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 172/398 (43%), Gaps = 4/398 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           PG   Y  L D      D      + +EM+    K  ++LF+ YN +++ + K   +E +
Sbjct: 339 PGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVK--LNLFT-YNALVKGVCKFGDMEKA 395

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                +++    K DTQ+YN ++  +L +    +  ++   M+K        T  ++I  
Sbjct: 396 DALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIING 455

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L + G ++ A ++F+ M     +P+  I+ +L+    + GR   ++++   M   G +P 
Sbjct: 456 LCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPD 515

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y S+I    K+ K++ A     EM   G +PN   +  +I  + KSG++ +A   F 
Sbjct: 516 VLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFK 575

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M   G  P     + L++ +   G    A  ++  M    + P + TY+AL+  L +  
Sbjct: 576 EMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNG 635

Query: 495 LVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +  A ++L E    G   DV + + ++  + K G +  A +   +M   GI  N     
Sbjct: 636 KLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYN 695

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            L     K    E A+ L +         + V Y +++
Sbjct: 696 ALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATII 733



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 118/548 (21%), Positives = 218/548 (39%), Gaps = 68/548 (12%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNES------RDFDGMLSLFDEMVHDSSKNG 231
           D ++S F  AKR  + V    C  +L D+L  +      R ++GML     ++HD     
Sbjct: 183 DEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEA--NVLHD----- 235

Query: 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291
                 Y  +I    +A   +       ++ +  C     +YNV++      G   +AFE
Sbjct: 236 ---VYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFE 292

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           + + M+K     D  TY ++I    K  R   A  + +EM  +  +P    + +L+D   
Sbjct: 293 LKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFM 352

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           + G    + +V  EM   G + +   Y +L++   K G ++ A  L +EM + G +P+  
Sbjct: 353 RQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQ 412

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST------------------------ 447
            +  +IE + K         + ++M+++  +PT  T                        
Sbjct: 413 TYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIM 472

Query: 448 -----------YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
                      Y+ L++ H   G+   A+++   M   G++P +  Y +++  L K + +
Sbjct: 473 VSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKM 532

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           + A   L+EM   G   +V     L+  Y K G +  A R+ + M   GI  N+ +   L
Sbjct: 533 EEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTAL 592

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
            +   K      A  +    +  +   D+  Y++++  L+R    Q     M +LS    
Sbjct: 593 IDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGA---MELLSEFLE 649

Query: 616 KAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV-------NVLLNYLVL 668
           K      GL          +  F ++   G  ++L E   +  +       N L+N L  
Sbjct: 650 K------GLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCK 703

Query: 669 MGQINRAR 676
            G+I RAR
Sbjct: 704 AGEIERAR 711



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 170/379 (44%), Gaps = 5/379 (1%)

Query: 218 SLFDEMVH---DSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
            LFDE V     + +NG  +     N ++  L KA+KLE+ +  +  +L+++   D  +Y
Sbjct: 180 GLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTY 239

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
             L+      G   +   +   ME+  CS    TY ++I  L ++G +D A +L + M +
Sbjct: 240 THLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDK 299

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           +        ++ L+D  GK  R   +  +  EM   G +P    Y +LI+ + + G    
Sbjct: 300 KGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGE 359

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A R+ +EM   G + N   +  +++   K G ++ A ++  +M   G  P   TY+ ++E
Sbjct: 360 AFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIE 419

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +           L + M  + L P   T   ++  L +   ++ A+++   M ++G   
Sbjct: 420 GYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKP 479

Query: 514 D-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           + V  + ++  ++++G    A+R L+ M   G++ +      +     K+   E AK  L
Sbjct: 480 NAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYL 539

Query: 573 ETYVESAAKVDLVLYTSVL 591
              +E   K ++  Y +++
Sbjct: 540 VEMIERGLKPNVYTYGALI 558



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 153/356 (42%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN VI  L K+ K+E +     ++++   K +  +Y  L+  +   G    A   ++ M
Sbjct: 518 CYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEM 577

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                + +      +I    K G    A  +F+ M  R+  P    +++L+  + + G+L
Sbjct: 578 LGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKL 637

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +M++  E    G  P    Y S+I  + K G +  A +L + M   G  PN   +  +
Sbjct: 638 QGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNAL 697

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+G+++ A  +F  +   G      TY+ +++ +  SG +  A +L++ MT  G+
Sbjct: 698 INGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGV 757

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
            P    Y+AL+    K    + A  + LE    G++   S + ++  + K G V  A + 
Sbjct: 758 PPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQL 817

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           L  M    ++ ++     L +   K    + A+       +     + + YT++L+
Sbjct: 818 LEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLS 873



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 99/467 (21%), Positives = 194/467 (41%), Gaps = 12/467 (2%)

Query: 131 NASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQ 190
           N++ V +I   +N+  W   L    +KL   P +VH +   K +ND    L  F W + Q
Sbjct: 38  NSNIVNEITTFLNQKNWESLLPLVSNKLS--PDVVH-SVITKQVNDPKRLLDFFNWVQFQ 94

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
             +    + + +L  +L  SR F    S+ ++M+  SS         Y+ ++  L K+ K
Sbjct: 95  MGFSQKLQSFSILALILCNSRLFSRADSVVNQMIMMSS-------GGYSEILDSLIKSCK 147

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
            E          +S+       + +L+  +  KGL  +A   +   ++    +       
Sbjct: 148 -EFDLNNVNGNENSNNNDRGVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNG 206

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++  L K+ +L+   + +  M E N       +  L+++  +AG      ++  EM+  G
Sbjct: 207 LLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKG 266

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             PS   Y  +I    +AG++D A  L   M   G   +   ++++I+   K  +   A 
Sbjct: 267 CSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAK 326

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +  +M   G  P    Y+ L++     G    A ++   M + G++  L TY AL+  +
Sbjct: 327 LMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGV 386

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549
            K   ++ A  +L EM  +G   D    ++++  Y+K+ +       L  M  S +    
Sbjct: 387 CKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTA 446

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +    +     ++   E A  + E  V    K + V+YT+++   V+
Sbjct: 447 YTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQ 493



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 136/305 (44%), Gaps = 2/305 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I  L KA ++E +   F  +       +  +Y  ++  +   G   KAF +++ M
Sbjct: 693 TYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEM 752

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D   Y  +I    K G  + A+ LF E  ++ F  + ++ A L+D   K+G++
Sbjct: 753 TLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNA-LMDGFCKSGKV 811

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++  +M     +P    Y  LI+ + K G L  A + + +M+     PN   +T +
Sbjct: 812 IEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTAL 871

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  +  +G+     ++F +M      P   T+S +++ H   G     +KL + M   G 
Sbjct: 872 LSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGG 931

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
               +    L+  L +++ V    K+L +++  G ++ ++    L+  + K G +D A R
Sbjct: 932 NVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAAR 991

Query: 536 WLRFM 540
            L+ M
Sbjct: 992 VLKSM 996



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 118/280 (42%), Gaps = 5/280 (1%)

Query: 194  VPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
            VP D   Y  L D   +  + +  LSLF E V    + G +  S+ N ++    K+ K+ 
Sbjct: 757  VPPDSFVYSALIDGCRKEGNTEKALSLFLESV----QKGFASTSSLNALMDGFCKSGKVI 812

Query: 253  MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
             +    + ++D   K D  +Y +L+      G   +A + +  M+K     +  TY  ++
Sbjct: 813  EANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALL 872

Query: 313  PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
                 +GR      LF EM  ++  P    ++ ++D+  K G    ++K+  +M   G  
Sbjct: 873  SGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGN 932

Query: 373  PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
             S  +   LI+   +   +   L++ +++   G   +    + ++    K+GK+D A  +
Sbjct: 933  VSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARV 992

Query: 433  FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
               M R  ++P  +  + L+ +   S   ++A      M 
Sbjct: 993  LKSMVRFKWVPDSTELNDLINVEQDSTDSENAGDFLKQMA 1032


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 168/357 (47%), Gaps = 4/357 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++N  +  LAK+  L+ ++  F + L    + D  S+ + +  F   G   K FE+   M
Sbjct: 75  SFNNALDLLAKSGNLDRTWGFFTEYLGRT-QFDVYSFGITIKAFCENGNVSKGFELLAQM 133

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E    S +   Y ++I +  ++G +D A  +F  M +     +  I+  +++   K G  
Sbjct: 134 ETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYK 193

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
               ++Y +M+  G  P+   Y SLI  Y + GKL  A +++DE+   G   N   + ++
Sbjct: 194 KDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNIL 253

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    + G++  A  +   M+RA   PT  T++ L++   ++GQ+D A+     +   GL
Sbjct: 254 IGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGL 313

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P L TY  L++  +K     V ++++ EM+  G S       +LM  +++   ++ A  
Sbjct: 314 CPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYE 373

Query: 536 WLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               M   G+  +      L    C+K  + E++K L ++ VE   + + V+Y +++
Sbjct: 374 MFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASK-LYKSMVEMHLQPNDVIYNTMI 429



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 129/276 (46%), Gaps = 1/276 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN L+T +   G    AF++++ + K   + +  TY ++I  L + G++  A  L + M
Sbjct: 214 TYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM 273

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           K  +  P+   F  L+D +   G+LD ++    +++  G  P+   Y  LI  ++K G  
Sbjct: 274 KRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNS 333

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
                L  EM   G  P+   +T+++ +  +S  ++ A  +F  M+R G +P   TY  L
Sbjct: 334 SVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVL 393

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +      G +  A KLY SM    L+P    Y  ++    K      A K L EM   G 
Sbjct: 394 IHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGV 453

Query: 512 SVDVSAS-DVLMVYIKDGSVDHALRWLRFMGSSGIR 546
           + +V++    + +  KDG    A R L+ M  +G++
Sbjct: 454 TPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLK 489



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 118/274 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    +  KL +++  F ++       +  +YN+L+     KG   KA  + E M
Sbjct: 214 TYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM 273

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++   +    T+ +++  L  +G+LD A+   +++K     P+   +  L+    K G  
Sbjct: 274 KRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNS 333

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
               ++  EM+  G  PS   Y  L+ ++ ++  ++ A  ++  M+  G  P+   + ++
Sbjct: 334 SVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVL 393

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I      G +  A  ++  M      P    Y+ ++  +        A+K    M   G+
Sbjct: 394 IHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGV 453

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            P +++Y + + +L K      A ++L EM   G
Sbjct: 454 TPNVASYISTIQILCKDGKSIEAKRLLKEMTEAG 487



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 121/266 (45%), Gaps = 1/266 (0%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           DG LSL  ++  + SK G++  +  YN +I  L +  ++  +    +++  +     T++
Sbjct: 225 DGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRT 284

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +N+LM    N G   KA    E ++         TY ++I   +K G      +L +EM+
Sbjct: 285 FNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREME 344

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +R   PS   +  L+++  ++  ++ + +++  M+  G  P    Y  LI      G + 
Sbjct: 345 DRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMV 404

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A +L+  M     +PN  ++  +I  + K      A+    +M + G  P  ++Y   +
Sbjct: 405 EASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTI 464

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRP 478
           ++    G+   A +L   MT AGL+P
Sbjct: 465 QILCKDGKSIEAKRLLKEMTEAGLKP 490



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 77/178 (43%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN+L++ F   G      E+   ME    S    TY +++ +  +S  ++ A ++F  M
Sbjct: 319 TYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLM 378

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           K     P  + +  L+  +   G +  + K+Y  M     +P+  +Y ++I  Y K    
Sbjct: 379 KRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNS 438

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
             AL+  +EM   G  PN   +   I+   K GK   A  +  +M  AG  P  S  S
Sbjct: 439 YKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPESLCS 496



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 47/299 (15%)

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD------------ 392
           +++++  ++  L+ S+  +  M   GH PS+  + + ++  AK+G LD            
Sbjct: 43  AVINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGR 102

Query: 393 ----------------------TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
                                     L  +M   G  PN  ++T++IE+  ++G +D A 
Sbjct: 103 TQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAK 162

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +F+ M+  G       Y+ ++      G      +LY  M   G+ P L TY +L+T  
Sbjct: 163 VMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEY 222

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGI---- 545
            +   + +A K+  E+   G + +    ++L+  + + G V  A   L  M  + I    
Sbjct: 223 CRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTT 282

Query: 546 RTNNFIVRQLFESC-MKNALYESAK-------PLLETYVESAAKVDLVLYTSVLAHLVR 596
           RT N ++  L  +  +  AL    K       P L TY    +    V  +SV++ LVR
Sbjct: 283 RTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVR 341


>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 484

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 104/483 (21%), Positives = 193/483 (39%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L   N  + +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSNTXEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELXVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVZEMKGXGIKPNAITYSTLLPGLCNAEKMSEARVJLKEMMDKYLAPTDNSIFMRLIXS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R            L+E     GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHXGXLIENFCKVGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKXAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 484

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 104/483 (21%), Positives = 194/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D  L
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E    +GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKAGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVBSEKSAYISLVQSXLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 150/335 (44%), Gaps = 4/335 (1%)

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
           +S   ID  SYNVL+  +   G   +A  +   ++    + + +TY+ ++ SL   G+L 
Sbjct: 132 ESGAVIDANSYNVLINAYCKSGEIEEALRV---LDHTSVAPNAATYDAVLCSLCDRGKLK 188

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A+++     +    P       L+D+  K   +  +MK++ EM+G G +P    Y  LI
Sbjct: 189 QAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLI 248

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           + + K G+LD A+    ++   G + +     MI+ S    G+   AM +   M R G  
Sbjct: 249 KGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCF 308

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P+  T++ L+      G +  A+ +   M   G  P   ++  L+     RK +D A + 
Sbjct: 309 PSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEH 368

Query: 503 LLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
           L  M + G   D+   ++L+  + KDG VD A+  L  + S G   +      + +  +K
Sbjct: 369 LEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLK 428

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               E A  LLE       K DL+  TSV+  L R
Sbjct: 429 VGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSR 463



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 151/357 (42%), Gaps = 1/357 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + Y+ V+  L    KL+ +     + L S C  D  +  VL+     +    +A +++  
Sbjct: 172 ATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNE 231

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M    C  D  TY ++I    K GRLD AI   +++     +        ++ S+   GR
Sbjct: 232 MRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGR 291

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              +MK+   M   G  PS   +  LI    + G L  AL + + M   G  PN   F  
Sbjct: 292 WMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNP 351

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+       +D A+     M   G  P   TY+ LL      G+VD A+ + + ++S G
Sbjct: 352 LIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKG 411

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHAL 534
             P L +Y  ++  L K    ++A ++L EM   G   D ++ + V+    ++G V  A+
Sbjct: 412 CSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAI 471

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           ++  ++   GI+ N FI   +     K      A   L   V +  K     YT+++
Sbjct: 472 KFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLI 528



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 151/336 (44%), Gaps = 6/336 (1%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           F ++    CK D  +YNVL+  F  +G   +A    + +    C  D  ++ +++ SL  
Sbjct: 229 FNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCS 288

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            GR   A+KL   M  +   PS   F  L++ + + G L  ++ V   M   GH P++  
Sbjct: 289 GGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRS 348

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           +  LI+ +     +D A+   + M   G  P+   + +++ +  K GK+D A+ I + + 
Sbjct: 349 FNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLS 408

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P+  +Y+ +++     G+ + A++L   M   GL+P L T T+++  L++   V 
Sbjct: 409 SKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVH 468

Query: 498 VAAKILLEMKTMGYSVDVSA---SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
            A K    +K  G+ +  +A   + ++M   K      A+ +L  M ++G +        
Sbjct: 469 EAIKFFHYLK--GFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTT 526

Query: 555 LFESCMKNALYESAKPLL-ETYVESAAKVDLVLYTS 589
           L +      L E A  L  E Y     K  L++  S
Sbjct: 527 LIKGITYEGLAEEASKLSNELYSRGLVKKSLIVKVS 562



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 106/528 (20%), Positives = 203/528 (38%), Gaps = 78/528 (14%)

Query: 22  NFRYPFHSNFIHHLDFNHKFIKNTSF---SSRLDYGETQNFVKDAIFFRKPNYVRSYCS- 77
           N    F  + IHHL    + I+N      S  L+Y   +  + D +       +R +C  
Sbjct: 63  NTSLNFEESEIHHL---CRLIRNGELEEGSRFLEYMTNKGKIPDVVACTA--LIREFCKI 117

Query: 78  GKSGDGEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAK 137
           G++ +       T  +  L+ESG+VI              D      +   +  +  + +
Sbjct: 118 GRTKNA------TRIMGILEESGAVI--------------DANSYNVLINAYCKSGEIEE 157

Query: 138 IVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGD 197
            + V++     P   T    L  +     + QA++V++            + QS   P  
Sbjct: 158 ALRVLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDR-----------QLQSKCYPDV 206

Query: 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCC 257
               +L D   +       + LF+EM     K  +     YN +I+   K  +L+ +   
Sbjct: 207 VTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVV---TYNVLIKGFCKEGRLDEAIIF 263

Query: 258 FKKVLDSDCKIDTQS-----------------------------------YNVLMTLFLN 282
            KK+    C+ D  S                                   +N+L+     
Sbjct: 264 LKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQ 323

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           KGL  KA  + E M K   + +  ++  +I        +D AI+  + M  R   P    
Sbjct: 324 KGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVT 383

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           +  L+ ++ K G++D ++ +  ++   G  PS   Y ++I+   K GK + A+ L +EM 
Sbjct: 384 YNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMC 443

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             G +P+    T ++   ++ GK+  A+  F  ++  G  P    Y+ ++     + Q  
Sbjct: 444 YKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTS 503

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            A+     M + G +P  ++YT L+  +    L + A+K+  E+ + G
Sbjct: 504 LAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRG 551



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 8/226 (3%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L ++G L+   +  + M  +   P      +L+    K GR   + ++   ++  G    
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVID 138

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
           A  Y  LI +Y K+G+++ ALR+ D   +A   PN   +  ++ S    GKL  AM +  
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVLDHTSVA---PNAATYDAVLCSLCDRGKLKQAMQVLD 195

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
              ++   P   T + L++       V  AMKL+N M   G +P + TY  L+    K  
Sbjct: 196 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEG 255

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
            +D A   L ++ + G   DV + ++++  +  G      RW+  M
Sbjct: 256 RLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGG-----RWMDAM 296



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 94/206 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++N +IQ       ++ +    + ++   C  D  +YN+L+T     G    A  I   +
Sbjct: 348 SFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQL 407

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               CS    +Y  +I  L K G+ + A++L +EM  +  +P      S+V  + + G++
Sbjct: 408 SSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKV 467

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++K +  ++G G +P+A +Y S++    KA +   A+    +M   G +P    +T +
Sbjct: 468 HEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTL 527

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFL 442
           I+     G  + A  +  ++   G +
Sbjct: 528 IKGITYEGLAEEASKLSNELYSRGLV 553


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 157/324 (48%), Gaps = 4/324 (1%)

Query: 216 MLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           M +L  E++++  ++G+   +  YN +I   ++A  LE +   F  +    C+ D  +YN
Sbjct: 306 MPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYN 365

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            +++++   GL  KA +++  +E      D  +Y  ++ + A+ G ++   ++++EM + 
Sbjct: 366 AMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKI 425

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
            F      + +++   GK G+ + ++++Y +MQ  G  P A  Y  LI+S  K  K+  A
Sbjct: 426 GFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEA 485

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             +  EM   G +P    ++ +I  +AK+GK   A   F  M R+G  P    YS +L++
Sbjct: 486 AGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDI 545

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           H    +   AM LY  M   G+    S Y  +L  L K   V+   +++ +M+ +     
Sbjct: 546 HLRFNEPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEEI---CG 602

Query: 515 VSASDVLMVYIKDGSVDHALRWLR 538
           ++   +  + +K    D A + LR
Sbjct: 603 MNTQTISSILVKGECYDEAAKMLR 626



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 153/315 (48%), Gaps = 6/315 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L ++ W   + WY P       +  VL ++      + +F      S+ N + +++A  
Sbjct: 203 ALEVYEWLNLRHWYSPNARMLSTILSVLGKANQEALAVEVFMR-AEPSAGNTVQVYNAMM 261

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG--LPYKAFEIYESME 297
            V     + +K++        + +  CK D  S+N L+   L  G  +P  A E+   + 
Sbjct: 262 GVYARRGRFNKVQE---LLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVR 318

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D  TY  +I + +++  L+ A K+F +M+  + +P    + +++   G+ G   
Sbjct: 319 RSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSG 378

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + +++ +++  G  P A  Y SL+ ++A+ G ++    +W+EM   GF  +   +  +I
Sbjct: 379 KAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMI 438

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K G+ ++A+ ++ DM+ +G  P   TY+ L++    + ++  A  + + M + G++
Sbjct: 439 HMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVK 498

Query: 478 PGLSTYTALLTLLAK 492
           P L TY+AL+   AK
Sbjct: 499 PTLKTYSALICGYAK 513



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 155/333 (46%), Gaps = 1/333 (0%)

Query: 268  IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327
            +D + +N L+  +   G   +A  I+ +M +   S    T   ++ +L   GRLD    +
Sbjct: 811  VDRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVV 870

Query: 328  FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
             QE+++  F+ S +    ++D+  +AG +    K+Y  M+  G+ P+  +Y  +    ++
Sbjct: 871  VQELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSR 930

Query: 388  AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
              ++     +  EM  AGF+P+  ++  +++ +         + ++  ++  G  P   T
Sbjct: 931  GKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDT 990

Query: 448  YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
            Y+ L+ M+    + +    L + M  AGL P L TY +L+    K++LV+ A ++  E++
Sbjct: 991  YNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQ 1050

Query: 508  TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
            + G  +D S    +M +Y   GS   A R    M  +G+      +  L  S   +   +
Sbjct: 1051 SKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQ 1110

Query: 567  SAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
             A+ +L    E+ + +  + Y+SV+   +R  D
Sbjct: 1111 EAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGD 1143



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 121/281 (43%), Gaps = 38/281 (13%)

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL--DTSMKVYME 365
           Y  M+   A+ GR +   +L   M+ER  +P    F +L+++  KAG +  + ++++  E
Sbjct: 257 YNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNE 316

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           ++  G RP    Y +LI + ++A  L+ A +++D+M     +P+   +  +I  + + G 
Sbjct: 317 VRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGL 376

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLL--------------------------------- 452
              A  +F D+E  GF P   +Y+ LL                                 
Sbjct: 377 SGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNT 436

Query: 453 --EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
              M+   GQ + A++LY  M S+G  P   TYT L+  L K   +  AA ++ EM   G
Sbjct: 437 MIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTG 496

Query: 511 YSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNF 550
               +     L+  Y K G    A      M  SGIR ++ 
Sbjct: 497 VKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHL 537



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/441 (21%), Positives = 192/441 (43%), Gaps = 42/441 (9%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLE- 252
           P    Y ++ D+     +    ++L+ EM+HD    GI+L  S Y  +++ L K +K+E 
Sbjct: 534 PDHLAYSVMLDIHLRFNEPKRAMTLYKEMLHD----GITLDHSLYELMLRTLRKVNKVED 589

Query: 253 -------MSYCC-----------------------FKKVLDSDCKIDTQSYNVLMTLFLN 282
                  M   C                        ++ +    +ID ++   +++ + +
Sbjct: 590 IGRVIRDMEEICGMNTQTISSILVKGECYDEAAKMLRRAISDHFEIDRENLLSILSSYSS 649

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
            G   +A ++ E +++          E ++  L K+ +LDAA+K +   +E  F  SF +
Sbjct: 650 SGRHAEALDLLEFLKEHSPRSSQMITEALVVMLCKAQQLDAALKEYSNNRELGFTGSFTM 709

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
           F SL+    +   +  + +V+ +M+ CG + S  +Y S++  Y K G  +TA  L D   
Sbjct: 710 FESLIQCCLENELITEASQVFSDMRFCGIKASESLYESMVLLYCKMGFPETAHHLIDFAE 769

Query: 403 IAG-FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
             G    N  L+  +IE++ +      A S+  ++ +         ++ L+E +A+SG  
Sbjct: 770 SDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCY 829

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           + A  ++N+M   G  P + T   LL  L     +D    ++ E++ MG+   +S S +L
Sbjct: 830 ERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFK--ISKSSIL 887

Query: 522 MV---YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
           ++   + + G++    +    M ++G      + R +     +       + +L    E+
Sbjct: 888 LMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEA 947

Query: 579 AAKVDLVLYTSVLAHLVRCQD 599
             K DL ++ SVL   V  +D
Sbjct: 948 GFKPDLSIWNSVLKMYVAIED 968



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 136/279 (48%), Gaps = 13/279 (4%)

Query: 324 AIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA----PMY 378
           A+++++ +  R+ + P+  + ++++  +GKA +   +++V+M  +     PSA     +Y
Sbjct: 203 ALEVYEWLNLRHWYSPNARMLSTILSVLGKANQEALAVEVFMRAE-----PSAGNTVQVY 257

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL--DIAMSIFTDM 436
            +++  YA+ G+ +    L D MR  G +P+   F  +I +  K+G +  ++A+ +  ++
Sbjct: 258 NAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEV 317

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
            R+G  P   TY+ L+   + +  ++ A K+++ M +   +P L TY A++++  +  L 
Sbjct: 318 RRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLS 377

Query: 497 DVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
             A ++  ++++ G+  D VS + +L  + ++G+V+        M   G   +      +
Sbjct: 378 GKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTM 437

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                K    E A  L      S    D V YT ++  L
Sbjct: 438 IHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSL 476



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/249 (19%), Positives = 111/249 (44%)

Query: 267  KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
            K D   +N ++ +++      K  ++Y+ +++     D  TY  +I    +  R +    
Sbjct: 950  KPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFS 1009

Query: 327  LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
            L  EM+     P  + + SLV S GK   ++ + +++ E+Q  G +     Y ++++ Y 
Sbjct: 1010 LMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYR 1069

Query: 387  KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
             +G    A RL+  M+ AG  P      +++ S+  SG+   A  + ++++  G   +  
Sbjct: 1070 NSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTL 1129

Query: 447  TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
             YS +++ +  +G  +  ++    M   GL P    +T  +   +  +    A  +L  +
Sbjct: 1130 PYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNAL 1189

Query: 507  KTMGYSVDV 515
            +  G+ + +
Sbjct: 1190 QDAGFDLPI 1198



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/287 (18%), Positives = 129/287 (44%), Gaps = 9/287 (3%)

Query: 193  YVPGDECYVMLFDVLN---ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
            Y P    Y ++  +L+   + RD + MLS   EM     K  +S+   +N V++     +
Sbjct: 914  YFPTMHLYRVMARLLSRGKQVRDVEAMLS---EMEEAGFKPDLSI---WNSVLKMYVAIE 967

Query: 250  KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
                +   ++++ +   + D  +YN L+ ++     P + F +   M          TY+
Sbjct: 968  DFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYK 1027

Query: 310  LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
             ++ S  K   ++ A +LF+E++ +  +   + + +++     +G    + +++  M+  
Sbjct: 1028 SLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDA 1087

Query: 370  GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
            G  P+      L+ SY  +G+   A ++   ++  G   +   ++ +I+++ ++G  +I 
Sbjct: 1088 GVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIG 1147

Query: 430  MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
            +     M++ G  P    ++C +   + S +   A+ L N++  AG 
Sbjct: 1148 IQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNALQDAGF 1194



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 83/185 (44%)

Query: 235  FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
               Y  ++    K   +E +   F+++    CK+D   Y+ +M ++ N G   KA  ++ 
Sbjct: 1023 LDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFS 1082

Query: 295  SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
             M+        +T  L++ S   SG+   A K+   +KE     S   ++S++D+  + G
Sbjct: 1083 MMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNG 1142

Query: 355  RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
              +  ++  ++M+  G  P   ++   I + + + +   A+ L + ++ AGF     L T
Sbjct: 1143 DYNIGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNALQDAGFDLPIRLLT 1202

Query: 415  MIIES 419
               ES
Sbjct: 1203 EKPES 1207


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 151/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 77  AIECYRLTREHKLWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 132

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 133 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 192

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 193 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLA 252

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y  M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 253 MEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 312

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S  L+P 
Sbjct: 313 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPD 372

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G++  V   +VLM
Sbjct: 373 TGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 415



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 142/332 (42%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 57  DIYVFSGLITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 116

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 117 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 176

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 177 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTF 236

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++    +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 237 TTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSM 296

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D  + + ++    K+G +D A    + M    IR ++     L     +      
Sbjct: 297 KGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 356

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 357 AEKMLREMLSVDLKPDTGTYTMIINEFCKKGD 388



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 136/311 (43%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 93  FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 152

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 153 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 212

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+   K G++D A+ ++  M      P+   + 
Sbjct: 213 KMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYN 272

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +D+A +    M   
Sbjct: 273 TLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQE 332

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++    D     +++  + K G V   
Sbjct: 333 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKG 392

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 393 SKLLKEMQRDG 403



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 141/319 (44%), Gaps = 6/319 (1%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG    AI+ ++  +E      F+    +++ + K     
Sbjct: 51  KGTQRSDIYVFSGLITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFK 110

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 111 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 170

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 171 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLI 230

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I   M +     D+   + L+  + K G +  A   
Sbjct: 231 PNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 290

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M   G++ + F    L + C K    ++A    +  ++   ++D V YT++++ L  
Sbjct: 291 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL-- 348

Query: 597 CQDEQN---ERHLMAILSA 612
           CQ+ ++   E+ L  +LS 
Sbjct: 349 CQEGRSVDAEKMLREMLSV 367



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 36/225 (16%)

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
            ++E+   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+  + 
Sbjct: 115 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 174

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-V 515
             G +D   +L ++M ++G++P + TY+ L+  L K   +D A ++  EM   G   + V
Sbjct: 175 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGV 234

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           + + ++    K+G VD A+   + M                       L +S  P     
Sbjct: 235 TFTTLIDGRCKNGRVDLAMEIYKRM-----------------------LSQSLLP----- 266

Query: 576 VESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF 620
                  DL+ Y +++  L +  D +    L+  +S    K   F
Sbjct: 267 -------DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 304


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 156/324 (48%), Gaps = 14/324 (4%)

Query: 218 SLFDEMVHDSSKNGISL--FSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYN 274
           ++FD++V    K G+     S Y  +I+   K   +E +    K V D   CK +  +YN
Sbjct: 238 AVFDQIV----KEGVVKPDVSTYTTIIRGYCKMGMIENA----KNVFDEMGCKPNLVTYN 289

Query: 275 VLMTLFLNKGLPYKAFEIYESM-EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
            ++  F  KGL   A +I + M E  +C  D  TY  +I    K G L+ A+K  +EM  
Sbjct: 290 TMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVS 349

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           RN  P+   + +++  +   G +D + ++   M+  G + +   + S+++     GKLD 
Sbjct: 350 RNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDD 409

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A R   EM   G   +   + +++  + K GK D A+S+  +M+  G  P+ S+++ +  
Sbjct: 410 AARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFR 469

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK-LVDVAAKILLEMKTMGYS 512
           +   SG+ D A  +   M   G  P   +Y+ ++  L K K  +    + + +M   G+ 
Sbjct: 470 ILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHH 529

Query: 513 VDVSA-SDVLMVYIKDGSVDHALR 535
           +D S  S ++  Y +DG+ D A+R
Sbjct: 530 LDASMYSWLVKGYCEDGNADMAMR 553



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 72/140 (51%), Gaps = 1/140 (0%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D   Y +++    K G+ D AI L +EMK R   PS + F ++   + ++G+ D +  + 
Sbjct: 425 DAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLIL 484

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKA-GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
            +M+  G  P+   Y ++I+   KA G++       D+M   G   +  +++ +++ + +
Sbjct: 485 RQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCE 544

Query: 423 SGKLDIAMSIFTDMERAGFL 442
            G  D+AM +F +M   G++
Sbjct: 545 DGNADMAMRLFCEMLDMGYV 564



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 96/204 (47%), Gaps = 1/204 (0%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + +  +++ L    KL+ +    K+++    + D ++Y V++  +   G    A  + + 
Sbjct: 392 ATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKE 451

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA-G 354
           M+    +   S++  +   L +SG+ D A  + ++MK+    P+F  +++++D + KA G
Sbjct: 452 MKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKG 511

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R+    +   +M   GH   A MY  L++ Y + G  D A+RL+ EM   G+  N   F 
Sbjct: 512 RMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFL 571

Query: 415 MIIESHAKSGKLDIAMSIFTDMER 438
             ++  +   K       F +M R
Sbjct: 572 AFVKGLSAKEKAFEVEKFFEEMSR 595


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 180/405 (44%), Gaps = 5/405 (1%)

Query: 190 QSWYVPGDECYVMLFDVLNE-SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           +S   P    Y ++ DV  +  R +D +L L DEM   S       F+  + V+    + 
Sbjct: 250 ESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDEM--RSRGLDFDEFTC-STVLSACGRE 306

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             ++ +   F  +     K  T +YN L+ +F   G+  +A  +   ME+  C  D  TY
Sbjct: 307 GLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTY 366

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             ++ +  ++G  +    +   M  +   P+   + +++++ G+ G +D +++++ +M  
Sbjct: 367 NEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMME 426

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P+   Y +++    K    +  +++   M++ G  PN   +  ++    K G    
Sbjct: 427 LGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKY 486

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488
              +F +M+  GF P   T++ L+  +   G  + A K++  M  AG  P ++TY ALL 
Sbjct: 487 VNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLN 546

Query: 489 LLAKRKLVDVAAKILLEMKTMGY-SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
            LA+R     A  ++L+M+  G+   + S S ++  Y K G+V       + +    I  
Sbjct: 547 ALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFP 606

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           +  ++R L  +  K       +   +   +   K DLVL  S+L+
Sbjct: 607 SWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLS 651



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 181/405 (44%), Gaps = 9/405 (2%)

Query: 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260
           + L   L+ S +++  L LF+  V +    GI+        I+ + +    E  +    K
Sbjct: 152 ISLLKALDYSGNWEKALLLFEWSVLNL---GIANEKIDRHAIELMVRILGRESQHTVASK 208

Query: 261 VLD----SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
           + D     D  +D ++Y  ++  +   G  ++A EI+E M +   S    TY +M+    
Sbjct: 209 LFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYG 268

Query: 317 KSGR-LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
           K GR  D  ++L  EM+ R         ++++ + G+ G +D + + +  ++  G++P  
Sbjct: 269 KMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGT 328

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y +L+  + KAG    AL +  EM      P+   +  ++ ++ ++G  +    +   
Sbjct: 329 VTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDA 388

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M   G +P   TY+ ++  +   G +D A+++++ M   G  P ++TY A+L +L K+ L
Sbjct: 389 MASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSL 448

Query: 496 VDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ 554
            +   KIL  MK  G S + ++ + +L +  K G   +  +  R M + G   +      
Sbjct: 449 SEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNT 508

Query: 555 LFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           L  +  +      A  + E  +++     +  Y ++L  L R  D
Sbjct: 509 LISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGD 553



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 100/225 (44%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            +YN L+     +G    A  +   M         ++Y LM+ S AK G +     + + 
Sbjct: 539 NTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKS 598

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           + + +  PS+ +  +LV +  K   L    + +  +Q  G++P   +  S++  +AK   
Sbjct: 599 IYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNM 658

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
            D A  +   +  AG +P+      +++ +A+ G    A  +   ++ +G  P   +Y+ 
Sbjct: 659 YDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNT 718

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           +++     G +   +++ + MTS G+ P + TY   ++  A + +
Sbjct: 719 VIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGM 763



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/291 (19%), Positives = 119/291 (40%), Gaps = 7/291 (2%)

Query: 219 LFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           + +EM+    K G S   + YN ++  LA+    + +      + +   +    SY+ LM
Sbjct: 525 MHEEMI----KAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYS-LM 579

Query: 278 TLFLNKGLPYKAFEIYE-SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
                KG   K  E+ E S+  G+          ++ +  K   L    + FQ +++  +
Sbjct: 580 VHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGY 639

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P   +  S++    K    D + ++   +   G +P    + SL++ YA+ G    A  
Sbjct: 640 KPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEE 699

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           +   ++ +G +P+   +  +I+   + G +   + I ++M   G  P   TY+  +  +A
Sbjct: 700 VLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYA 759

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           + G       + + M     RP   TY  +     K +  D A   + ++K
Sbjct: 760 AQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKARRYDEAIDFVSKIK 810


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 183/402 (45%), Gaps = 10/402 (2%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           +D  ++L +FRWA  +  +    E Y M+ D+L   +  + +  L +EM      N  ++
Sbjct: 87  DDWKSALGVFRWASSRPSFRHSSESYDMMVDILGRMKVMEKLRDLLEEMREGGLVNMNTV 146

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
             A  R +      D + +    F  +     + +T+S N+L+     +    +A EI+ 
Sbjct: 147 AKAMRRFVGAGQWVDAVRI----FDDLQALGLEKNTESMNLLLDTLCKEKFVQQAREIFL 202

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            + K   + +  T+ + I    K  R+D A    QEMK   F P    +++L+    + G
Sbjct: 203 EL-KQHIAPNAHTFNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEG 261

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
                 ++  EMQ  G   +   Y S++ +  KA K + AL++ + MR +G RP+   F 
Sbjct: 262 NFSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFN 321

Query: 415 MIIESHAKSGKLDIAMSIF-TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-T 472
            +I +  ++G+LD A  +F  +M +AG  P  STY+ ++ M     Q   A+++   M  
Sbjct: 322 SLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMEN 381

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVD-VAAKILLEMKTMGY-SVDVSASDVLMVYI-KDGS 529
           S G +P   TY  L+    +   +D V ++IL +M    + S+D+S   +L+  + ++  
Sbjct: 382 SGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCREDR 441

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            + A      M    I       R L +   +  +Y++A+ +
Sbjct: 442 CNWAFSLFEEMIDQDIIPRYRTCRLLLDEVKQKNMYQAAEKI 483


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 150/322 (46%), Gaps = 4/322 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  L  A K+  +    K +    C  D  ++N L+  F   G+  +A E+ E M 
Sbjct: 242 YNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMC 298

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D  TY +++  L + G++  A  L +E+  + + P    + SLVD + K+G ++
Sbjct: 299 RENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIE 358

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + K+  EM   G R    MY SL+  Y +AG +  A  +  EM      P    + +++
Sbjct: 359 EAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVL 418

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               K G +  A+S+ +D+   G++P   TY+ L++    + +V  A  L + M S G  
Sbjct: 419 GGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCF 478

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRW 536
           P   T  +++  L +   VD A  +++EM    ++ +V   + ++    K   +D A   
Sbjct: 479 PNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMV 538

Query: 537 LRFMGSSGIRTNNFIVRQLFES 558
           L  M   G+  ++F  R+L  S
Sbjct: 539 LDAMRGQGVALDDFAYRKLIVS 560



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 183/423 (43%), Gaps = 11/423 (2%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++  F WA  Q  Y      Y  L D+L +S        ++ +++H      +  F  
Sbjct: 8   DLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKI 67

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
              +I+   KA +  M    F + LD      D   +NVL+      G P +A +++E+M
Sbjct: 68  ---LIRGNCKAGQ-AMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENM 123

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR--PSFNIFASLVDSMGKAG 354
           E      +  TY  +I  L KSG L+ A +L +EM  +  +  P    + +L+++  +A 
Sbjct: 124 ESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRAS 183

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R+  +     +M+  G  P       L+    K G ++ AL + D M++AG  P+   + 
Sbjct: 184 RIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYN 243

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            II +   +GK+  A  I   M  +   P   T++ LL+    +G +  A+++   M   
Sbjct: 244 SIIHALCVAGKVVEAAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRE 300

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
            + P + TYT L+  L +   V VA  +L E+   GY  DV A   L+  + K G ++ A
Sbjct: 301 NILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEA 360

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
            + ++ M   G RT   +   L     +      A+ +L   V       L  Y  VL  
Sbjct: 361 HKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGG 420

Query: 594 LVR 596
           L++
Sbjct: 421 LIK 423



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 172/375 (45%), Gaps = 6/375 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN ++  L K+     +   +K +L S C  +  ++ +L+      G   +A E   ++
Sbjct: 29  SYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRAL 88

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++   + D   + ++I  L K G  D A+KLF+ M+    +P    + +++  + K+G L
Sbjct: 89  DEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNL 148

Query: 357 DTSMKVYMEM--QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           + + ++  EM  +G    P    Y +LI ++ +A ++  A    ++M+ AG  P+     
Sbjct: 149 EKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCN 208

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           +++    K G ++ A+ I   M+ AG +P   TY+ ++     +G+V  A ++  +M+ +
Sbjct: 209 ILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCS 268

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
              P L T+  LL    K  ++  A ++L EM       DV    +L+  + + G V  A
Sbjct: 269 ---PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVA 325

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
              L  +   G   +      L +   K+   E A  L++       +  +V+Y+S+++ 
Sbjct: 326 FYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSG 385

Query: 594 LVRCQDEQNERHLMA 608
             R  +    R ++A
Sbjct: 386 YCRAGNVHKAREILA 400



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 7/342 (2%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K D  SYN L+ + +  G  ++  ++Y+ +    CS +  T++++I    K+G+   A++
Sbjct: 24  KHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALE 83

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
             + + E +  P   IF  L+  + K G  D ++K++  M+    +P    Y ++I    
Sbjct: 84  FLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLC 143

Query: 387 KAGKLDTALRLWDEMRIAGFR--PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
           K+G L+ A  L +EM   G +  P+   +  +I +  ++ ++  A +    M+ AG  P 
Sbjct: 144 KSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPD 203

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             T + L+      G V+ A+++ + M  AG  P + TY +++  L     V  AA+IL 
Sbjct: 204 VLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEIL- 262

Query: 505 EMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
             KTM  S D V+ + +L  + K G +  AL  L  M    I  +      L     +  
Sbjct: 263 --KTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVG 320

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
             + A  LLE  V      D++ YTS++  L +   E  E H
Sbjct: 321 QVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCK-SGEIEEAH 361



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 142/330 (43%), Gaps = 1/330 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N ++    KA  L  +    +++   +   D  +Y +L+      G    AF + E + 
Sbjct: 274 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 333

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +     D   Y  ++  L KSG ++ A KL +EM  R  R    +++SLV    +AG + 
Sbjct: 334 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVH 393

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + ++  EM      P    Y  ++    K G +  A+ L  ++   G+ P+   +  +I
Sbjct: 394 KAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLI 453

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K+ ++  A  +  +M   G  P   T   ++      G+VD A  L   M+     
Sbjct: 454 DGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHA 513

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS-VDHALRW 536
           P +  YT+L+  L K   +D A  +L  M+  G ++D  A   L+V +  G  V  A+  
Sbjct: 514 PNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAM 573

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
              M + G   +    + L E+ M N+++E
Sbjct: 574 YDEMVARGFLPDGSTSKTLEEAAMSNSVFE 603



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 21/288 (7%)

Query: 315 LAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
           + +S R D AI+ F    E++ ++   + +  L+D + K+G    + KVY ++   G  P
Sbjct: 1   MRRSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSP 60

Query: 374 SAPMYVSLIESYAKAGKLDTAL---RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           +   +  LI    KAG+   AL   R  DE  +A   P+  +F ++I    K G  D A+
Sbjct: 61  NLVTFKILIRGNCKAGQAMRALEFLRALDEFSVA---PDVYIFNVLIHGLFKDGNPDQAV 117

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR--PGLSTYTALLT 488
            +F +ME +   P   TY+ ++     SG ++ A +L   M   G +  P + TY  L+ 
Sbjct: 118 KLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLIN 177

Query: 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSG--- 544
              +   +  A     +MK  G + DV   ++L+  I KDG V+ AL  L  M  +G   
Sbjct: 178 AFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVP 237

Query: 545 -IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            + T N I+  L   C+   + E+A+ +L+T    +   DLV + ++L
Sbjct: 238 DVITYNSIIHAL---CVAGKVVEAAE-ILKTM---SCSPDLVTFNTLL 278



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 121/312 (38%), Gaps = 37/312 (11%)

Query: 150 ELETQLDKLQFVPKMVHIT---QALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDV 206
           E+  ++ +   +P ++  T     L  +     +  L     RQ  Y+P    Y  L D 
Sbjct: 292 EVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQG-YIPDVIAYTSLVDG 350

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSA----------------------------- 237
           L +S + +    L  EM     + G+ ++S+                             
Sbjct: 351 LCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPP 410

Query: 238 ---YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
              YN V+  L K   +  +      ++      D  +YN L+          +A ++ +
Sbjct: 411 LFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLAD 470

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M    C  +  T   ++  L + GR+D A  L  EM  +   P+  ++ SL+D + K+ 
Sbjct: 471 EMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSD 530

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R+D +  V   M+G G       Y  LI S +  G++  A+ ++DEM   GF P+ G  +
Sbjct: 531 RMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPD-GSTS 589

Query: 415 MIIESHAKSGKL 426
             +E  A S  +
Sbjct: 590 KTLEEAAMSNSV 601


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 148/293 (50%), Gaps = 3/293 (1%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYESMEKGECSLDGSTYELMIPSLA 316
           ++ VL S+ +++T + N+++  +  K L +   + +   MEK     D  T+ +M+ +  
Sbjct: 147 YRLVLSSNSEVNTYTLNIMVHSYC-KTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARF 205

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           ++G ++AA+ L   M  +  +P    + S++  + + GR D + +V+  M  CG  P   
Sbjct: 206 RAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVR 265

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            +  LI  + +AG+L+ ALR + EMR     P+   F+ +I    + G++D A     +M
Sbjct: 266 SFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREM 325

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G +P    Y+ ++     +G +  A+++ + M + G  P + TY  LL  L K + +
Sbjct: 326 REFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRL 385

Query: 497 DVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
             A ++L EMK  G   D+   + ++  Y +DG+++ AL++   +    +R +
Sbjct: 386 SDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPD 438



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 166/361 (45%), Gaps = 1/361 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N ++    +A  +E +      ++    K    +YN ++   L  G   KA E++ +M
Sbjct: 196 THNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAM 255

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +    + D  ++ ++I    ++G L+ A++ ++EM+ R   P    F+ L+    + G +
Sbjct: 256 DACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEM 315

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + +   EM+  G  P   +Y  +I  + +AG +  ALR+ DEM   G  P+   +  +
Sbjct: 316 DHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTL 375

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    K  +L  A  +  +M+  G  P   T++ L+  +   G ++ A++ +++++   L
Sbjct: 376 LNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRL 435

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHALR 535
           RP + TY  L+  + ++  +  A ++  +M +   +   V+ S ++  + + G VD+A  
Sbjct: 436 RPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFA 495

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           +L  M + GI  N      + +   ++      +  L          DL+ Y +++   V
Sbjct: 496 FLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYV 555

Query: 596 R 596
           +
Sbjct: 556 K 556



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 148/321 (46%), Gaps = 5/321 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++N +I    +A +LE +   +K++       D  S++ L+ LF  +G    A E    M
Sbjct: 266 SFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREM 325

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     DG  Y ++I    ++G +  A+++  EM      P    + +L++ + K  RL
Sbjct: 326 REFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRL 385

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++  EM+  G  P    + +LI  Y + G ++ AL+ +D +     RP+   +  +
Sbjct: 386 SDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTL 445

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   + G L  A  ++ DM      P   TYS L++ H   GQVD+A    + M + G+
Sbjct: 446 IDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGI 505

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P + TY +++    +   V    + L +M+      D+   + L+  Y+K+G +  A  
Sbjct: 506 VPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFN 565

Query: 536 WLRFMGSSGIR----TNNFIV 552
            L+ M +  ++    T N I+
Sbjct: 566 LLKIMENENVQPDAVTYNMII 586



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 159/375 (42%), Gaps = 12/375 (3%)

Query: 185 RWAKRQSWYVPGDECYV--------MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
           RW K +  +   D C V        ML      + + +  L  + EM        +  FS
Sbjct: 244 RWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFS 303

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
               +I    +  +++ +    +++ +     D   Y +++  F   GL  +A  + + M
Sbjct: 304 C---LIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEM 360

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D  TY  ++  L K  RL  A +L  EMKER   P    F +L+    + G +
Sbjct: 361 VAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNI 420

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + +++ +  +     RP    Y +LI+   + G L  A  LWD+M      PN   ++++
Sbjct: 421 EKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSIL 480

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+SH + G++D A +   +M   G +P   TY+ +++ +  SG V    +    M    +
Sbjct: 481 IDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKV 540

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
            P L TY  L+    K   +  A  +L  M+      D V+ + ++  +   G++  A  
Sbjct: 541 MPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADW 600

Query: 536 WLRFMGSSGIRTNNF 550
             + MG+ GI  + +
Sbjct: 601 VYKKMGARGIEPDRY 615



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 155/363 (42%), Gaps = 1/363 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           ++ +I+   ++ K   ++  F+ +LD    I   + N L+      G P+   + Y  + 
Sbjct: 92  FDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALSRAGWPHLTADAYRLVL 151

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                ++  T  +M+ S  K+ +      +  EM++R   P       +VD+  +AG ++
Sbjct: 152 SSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVE 211

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +M +   M   G +P    Y S+++   + G+ D A  ++  M   G  P+   F M+I
Sbjct: 212 AAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLI 271

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               ++G+L+ A+  + +M      P   ++SCL+ +    G++D A +    M   GL 
Sbjct: 272 GGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLM 331

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P    YT ++    +  L+  A ++  EM   G   DV   + L+  + K+  +  A   
Sbjct: 332 PDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEEL 391

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M   G+  +      L     ++   E A    +T  +   + D+V Y +++  + R
Sbjct: 392 LNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCR 451

Query: 597 CQD 599
             D
Sbjct: 452 QGD 454



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 112/252 (44%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN ++  L K  +L  +     ++ +     D  ++  L+  +   G   KA + ++++
Sbjct: 371 TYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTI 430

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  D  TY  +I  + + G L  A +L+ +M  R   P+   ++ L+DS  + G++
Sbjct: 431 SDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQV 490

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +     EM   G  P+   Y S+I+ Y ++G +    +   +MR     P+   +  +
Sbjct: 491 DNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTL 550

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I  + K GK+  A ++   ME     P   TY+ ++   +  G +  A  +Y  M + G+
Sbjct: 551 IHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGI 610

Query: 477 RPGLSTYTALLT 488
            P   TY +++ 
Sbjct: 611 EPDRYTYMSMIN 622



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 113/263 (42%), Gaps = 1/263 (0%)

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
           LS  +E++++  + G+      +  +I    +   +E +   F  + D   + D  +YN 
Sbjct: 385 LSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNT 444

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+     +G   KA E+++ M   E   +  TY ++I S  + G++D A     EM  + 
Sbjct: 445 LIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKG 504

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P+   + S++    ++G +    +   +M+     P    Y +LI  Y K GK+  A 
Sbjct: 505 IVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAF 564

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            L   M     +P+   + MII   +  G +  A  ++  M   G  P   TY  ++  H
Sbjct: 565 NLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGH 624

Query: 456 ASSGQVDSAMKLYNSMTSAGLRP 478
             +G    + +L++ M   GL P
Sbjct: 625 VVAGNSKKSFQLHDEMLQKGLAP 647



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 143/350 (40%), Gaps = 47/350 (13%)

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G +DT   V  EM+     P    +  ++++  +AG ++ A+ L D M   G +P    +
Sbjct: 176 GEVDT---VISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTY 232

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +++   ++G+ D A  +F  M+  G  P   +++ L+     +G+++ A++ Y  M  
Sbjct: 233 NSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRG 292

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDH 532
             + P + +++ L+ L  +R  +D AA+ L EM+  G   D V  + V+  + + G +  
Sbjct: 293 RRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLE 352

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           ALR    M + G   +      L     K      A+ LL    E     DL  +T+++ 
Sbjct: 353 ALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIH 412

Query: 593 HLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGI-DYELE 651
               C+D   E+ L                                  +FF  I D  L 
Sbjct: 413 GY--CRDGNIEKAL----------------------------------QFFDTISDQRLR 436

Query: 652 EGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPK----AIVFDQH 697
                Y  N L++ +   G + +A  +W   +  ++FP     +I+ D H
Sbjct: 437 PDIVTY--NTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSH 484



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 84/210 (40%), Gaps = 3/210 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L D +    D      L+D+M    S+        Y+ +I    +  +++ ++    
Sbjct: 442 YNTLIDGMCRQGDLGKANELWDDM---HSREIFPNHVTYSILIDSHCEKGQVDNAFAFLD 498

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++++     +  +YN ++  +   G   K  +    M   +   D  TY  +I    K G
Sbjct: 499 EMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEG 558

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           ++  A  L + M+  N +P    +  ++      G +  +  VY +M   G  P    Y+
Sbjct: 559 KMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYM 618

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           S+I  +  AG    + +L DEM   G  P+
Sbjct: 619 SMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 103/450 (22%), Positives = 196/450 (43%), Gaps = 28/450 (6%)

Query: 157 KLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
           K+ F+P    I+      ND   + SLF    RQ+   P  E +  +   L +S+ +  +
Sbjct: 38  KINFIP-YSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIE-FNKILGSLVKSKHYHTV 95

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           LSL  +M           F   N V+ +     +L M Y             +T ++  L
Sbjct: 96  LSLSQQME----------FEGINPVLFHFQHPHQL-MGY-----------HPNTITFTTL 133

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +     KG  ++A   ++++      LD   Y  +I  L K G   AA+ L + +     
Sbjct: 134 IKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLV 193

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
           +P+  ++++++D M K   ++ +  +Y EM   G  P+   Y +LI  +   G+L  A+ 
Sbjct: 194 QPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAID 253

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+++M +   +P+   F ++++   K GK+    ++F  M + G  P   TY  L++ + 
Sbjct: 254 LFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYC 313

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
              +V+ A  +  +M+  G+ P + +Y  L+    K K VD A  +  EM       DV 
Sbjct: 314 LVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVV 373

Query: 517 ASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
             + L+  + K G + +AL+ +  M   G+  +      + ++  KN   + A  LL   
Sbjct: 374 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKL 433

Query: 576 VESAAKVDLVLYTSVLAHLV---RCQDEQN 602
            +   + ++  YT ++  L    R +D  N
Sbjct: 434 KDQGIRPNMYTYTILIDGLCKGGRLEDAHN 463



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 146/318 (45%), Gaps = 6/318 (1%)

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           AF++Y  M     S +  TY  +I      G+L  AI LF +M   N +P    F  LVD
Sbjct: 216 AFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVD 275

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
              K G++     V+  M   G +P+   Y SL++ Y    +++ A  +   M   G  P
Sbjct: 276 GFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNP 335

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +   + ++I+   K  K+D AM++F +M     +P   TY+ L++     G++  A+KL 
Sbjct: 336 DIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLV 395

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KD 527
           + M   G+ P + TY+++L  L K   VD A  +L ++K  G   ++    +L+  + K 
Sbjct: 396 DEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKG 455

Query: 528 GSVDHALRWLRFMGSSG--IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           G ++ A      +   G  I  N + V  +        L++ A  LL    +++   D V
Sbjct: 456 GRLEDAHNIFEDLLVKGYNITVNTYTV--MIHGFCNKGLFDEALALLSKMKDNSCIPDAV 513

Query: 586 LYTSVLAHLVRCQDEQNE 603
            Y  ++  L   +DE ++
Sbjct: 514 TYEIIIRSLFD-KDENDK 530



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 145/325 (44%), Gaps = 5/325 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  + K   +  ++  + +++      +  +Y+ L++ F   G    A +++  M 
Sbjct: 200 YSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMI 259

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
                 D  T+ +++    K G++     +F  M ++  +P+   + SL+D       ++
Sbjct: 260 LENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVN 319

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  +   M   G  P    Y  LI+ + K  K+D A+ L+ EM      P+   +  +I
Sbjct: 320 KAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLI 379

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K GK+  A+ +  +M   G  P   TYS +L+    + QVD A+ L   +   G+R
Sbjct: 380 DGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIR 439

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P + TYT L+  L K   ++ A  I  ++   GY++ V+   V++  +   G  D AL  
Sbjct: 440 PNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALAL 499

Query: 537 LRFMGSSGI----RTNNFIVRQLFE 557
           L  M  +       T   I+R LF+
Sbjct: 500 LSKMKDNSCIPDAVTYEIIIRSLFD 524



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 173/392 (44%), Gaps = 8/392 (2%)

Query: 154 QLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213
           QLD++ +   ++H    L  + ++  +L L R     +   P    Y  + D + + +  
Sbjct: 159 QLDQVGY-GTLIH---GLCKVGETRAALDLLRRVD-GNLVQPNVVMYSTIIDGMCKDKHV 213

Query: 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           +    L+ EMV       +  +SA   +I       +L+ +   F K++  + K D  ++
Sbjct: 214 NDAFDLYSEMVSKGISPNVVTYSA---LISGFFTVGQLKDAIDLFNKMILENIKPDVYTF 270

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N+L+  F   G   +   ++  M K     +  TY  ++        ++ A  +   M +
Sbjct: 271 NILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQ 330

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R   P    +  L+D   K  ++D +M ++ EM      P    Y SLI+   K GK+  
Sbjct: 331 RGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISY 390

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           AL+L DEM   G  P+   ++ I+++  K+ ++D A+++ T ++  G  P   TY+ L++
Sbjct: 391 ALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILID 450

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                G+++ A  ++  +   G    ++TYT ++     + L D A  +L +MK      
Sbjct: 451 GLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIP 510

Query: 514 DVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           D    ++++  + D   +     LR M + G+
Sbjct: 511 DAVTYEIIIRSLFDKDENDKAEKLREMITRGL 542


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 173/402 (43%), Gaps = 4/402 (0%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           +  L + L +  +F   + LFD+MV    +  +     YN +I  L K  +   +    K
Sbjct: 166 FTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVY---TYNTIINGLCKIGETAAAAGLLK 222

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           K+ ++ C+ +  +Y+ L+       L  +A +I+  M+    S D  TY  +I  L K  
Sbjct: 223 KMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFS 282

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R   A  L  EM   N  P    F  LVD+  K G++  ++ V   M   G  P+   Y 
Sbjct: 283 RWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYS 342

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SL+  Y+    +  A +L+  M   G +PN   + ++I  + K+ ++D AM +F +M   
Sbjct: 343 SLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQ 402

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   +Y+ L+      G++  A  L+ +M + G  P L TY+ LL    K+  +  A
Sbjct: 403 GLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKA 462

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
            ++   M++     ++    +L+    K G+   A +    +   G++ +  +   +   
Sbjct: 463 FRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIING 522

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDE 600
             K  L + A              D + Y  ++  L++ +DE
Sbjct: 523 LCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDE 564



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 170/378 (44%), Gaps = 1/378 (0%)

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
             +  ++++ +    KV+    +    ++  L+      G   +A E+++ M    C  D
Sbjct: 138 FCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPD 197

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  +I  L K G   AA  L ++M+E   +P+   +++L+DS+ +   ++ ++ ++ 
Sbjct: 198 VYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFS 257

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
            M+  G  P    Y SLI+   K  +   A  L +EM      P+   F +++++  K G
Sbjct: 258 YMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEG 317

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           K+  A+ +   M   G  P   TYS L+  ++    V  A KL++ M + G +P + +Y 
Sbjct: 318 KVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYN 377

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSS 543
            L+    K K +D A ++  EM   G +  +VS + ++  + + G +  A    R M ++
Sbjct: 378 ILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTN 437

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
           G   + F    L +   K      A  L      +  K +LV+YT ++  + +  + ++ 
Sbjct: 438 GNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDA 497

Query: 604 RHLMAILSATKHKAHAFL 621
           R L + L     + H  L
Sbjct: 498 RKLFSELFVQGLQPHVQL 515



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 139/298 (46%), Gaps = 3/298 (1%)

Query: 218 SLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           +L +EM   +S N +     +N ++    K  K+  +    K + +   + +  +Y+ LM
Sbjct: 289 ALLNEM---TSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLM 345

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
             +       +A +++  M    C  +  +Y ++I    K+ R+D A++LF EM  +   
Sbjct: 346 YGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLT 405

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P+   + +L+    + G+L  +  ++  M   G+ P    Y  L++ + K G L  A RL
Sbjct: 406 PNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRL 465

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
           +  M+    +PN  ++T+++ +  KSG    A  +F+++   G  P    Y+ ++     
Sbjct: 466 FRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCK 525

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
            G +D A++ + +M + G  P   +Y  ++  L + K    A  ++ EM+  G+  DV
Sbjct: 526 EGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADV 583


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 147/332 (44%), Gaps = 4/332 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 85  AIECYRLTREHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 140

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 141 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 200

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +T +I+ 
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDG 320

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L       G+   A K+   M S GL+P 
Sbjct: 321 CCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPD 380

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
             TYT ++    K+  V   +K+L EM+  G+
Sbjct: 381 ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 412



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 143/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 65  DJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 125 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 184

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 185 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 244

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSV 304

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A    + M    IR +      L     +      
Sbjct: 305 KGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVD 364

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 365 AEKMLREMLSVGLKPDARTYTMIINEFCKKGD 396



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 139/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 160

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 161 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 220

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 221 KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYN 280

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +DSA +    M   
Sbjct: 281 TLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQE 340

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHA 533
            +R     YTAL + L +      A K+L EM ++G   D  + + ++  + K G V   
Sbjct: 341 NIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKG 400

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 401 SKLLKEMQRDG 411



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 121/278 (43%), Gaps = 40/278 (14%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLDTA 394
           R    +F+ L+ +  ++G L  +++ Y   +   H+   P      ++E   K       
Sbjct: 63  RSDJYVFSGLITAYLESGFLRDAIECYRLTRE--HKFWVPFDTCRKVLEHLMKLKYFKLV 120

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              ++E+   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+  
Sbjct: 121 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 180

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +   G +D   +L ++M ++G++P + TY+ L+  L K   +D A ++  EM   G   +
Sbjct: 181 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPN 240

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V+ + ++  + K+G VD A+                I +Q+        L +S  P   
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAME---------------IYKQM--------LSQSLSP--- 274

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
                    DL+ Y +++  L +  D +   HL+  +S
Sbjct: 275 ---------DLITYNTLIYGLCKKGDLKQAHHLIDEMS 303


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 144/300 (48%), Gaps = 4/300 (1%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           YN+++T     G   +A ++  SM    C+ D  TY ++I +L K GRL+ A  L + M+
Sbjct: 42  YNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQ 101

Query: 333 ERNFRPSFNIFASLVDSMGKAG----RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            R+       + +L+  + + G    R++ + +++ EM   GH P++  Y  +I++  + 
Sbjct: 102 ARDCPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRV 161

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
              + A ++ D M   G   +   + M+I   AK+G +D AM +F +M   G +P   TY
Sbjct: 162 KMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTY 221

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + +++    +G+V+ A KL+  M + G+ P   TYT++     K   +  A   L+EM+ 
Sbjct: 222 NSVVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRK 281

Query: 509 MGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
            G    +S   ++    K G      + LR M   G + N      +FE+  K +  + A
Sbjct: 282 EGLVDAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDA 341


>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 484

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/483 (21%), Positives = 195/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +   +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIIMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E    +GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y +++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNSMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYNLLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 161/373 (43%), Gaps = 1/373 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I  L K  +   +   FKK+ ++ C+ +  +YN+L+       L  +A +I+  M
Sbjct: 202 TYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYM 261

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           +    S D  TY  +I  L    R   A  L  EM   N  P+   F  LVD++ K G++
Sbjct: 262 KAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKV 321

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  V+  M   G  P    Y SL+  Y+   ++  A +L+D M   G +P+   + ++
Sbjct: 322 SEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNIL 381

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ + K+ ++D A  +F +M   G  P    Y+ L+      G++  A  L+ +M S G 
Sbjct: 382 IKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGN 441

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P L TY+ LL    K   +  A ++   M++     D++  ++L+    K G++  A +
Sbjct: 442 LPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARK 501

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   G+  N  I   +  +  K  L + A              D   Y  ++   +
Sbjct: 502 LFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFL 561

Query: 596 RCQDEQNERHLMA 608
           + +DE     L+ 
Sbjct: 562 QYKDESRAAQLIG 574



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 166/371 (44%), Gaps = 1/371 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I   +   ++++++  F K++    + D  ++N L+      G   +A E ++  E   
Sbjct: 136 LIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASG 195

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           C     TY  +I  L K G   AA  LF++M+E   +P+   +  L+DS+ K   ++ ++
Sbjct: 196 CQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEAL 255

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            ++  M+     P    Y SLI+      +   A  L +EM      PN   F +++++ 
Sbjct: 256 DIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAI 315

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K GK+  A  +F  M   G  P   TYS L+  ++   ++  A KL+++M + G +P  
Sbjct: 316 CKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDA 375

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRF 539
            +Y  L+    K K +D A ++  EM   G + D V+ + ++    + G +  A    + 
Sbjct: 376 FSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKN 435

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           M S+G   + F    L +   K      A  L      +  K D+ +Y  ++  + +  +
Sbjct: 436 MHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGN 495

Query: 600 EQNERHLMAIL 610
            ++ R L + L
Sbjct: 496 LKDARKLFSEL 506



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 164/349 (46%), Gaps = 11/349 (3%)

Query: 172 KVINDSDTSLSLFRW--AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK 229
           K++N++   L +F +  AKR S   P    Y  L   L   R +    +L +EM   +S 
Sbjct: 249 KLVNEA---LDIFSYMKAKRIS---PDIFTYNSLIQGLCNFRRWKEASALLNEM---TSL 299

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
           N +     +N ++  + K  K+  +   FK + +   + D  +Y+ LM  +  +    +A
Sbjct: 300 NIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEA 359

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            +++++M    C  D  +Y ++I    K+ R+D A +LF EM  +   P    + +L+  
Sbjct: 360 RKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHG 419

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + + GRL  +  ++  M   G+ P    Y  L++ + K G L  A RL+  M+    +P+
Sbjct: 420 LCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPD 479

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
             ++ ++I++  K G L  A  +F+++   G LP    Y+ ++      G +D A++ + 
Sbjct: 480 IAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFR 539

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           +M   G  P   +Y  ++    + K    AA+++ EM+  G+  +   +
Sbjct: 540 NMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGTT 588



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 146/335 (43%), Gaps = 5/335 (1%)

Query: 273 YNVLMTLFLNKGLPYKA-FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +  L++  +  G  Y A   + + ME    S D  T  ++I   +   R+D A  +F +M
Sbjct: 97  FTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKM 156

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            +   +P    F +L++ + K G+   +++ + + +  G +P+   Y ++I    K G+ 
Sbjct: 157 IKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGET 216

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A  L+ +M  AG +PN   + ++I+S  K   ++ A+ IF+ M+     P   TY+ L
Sbjct: 217 TAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSL 276

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++   +  +   A  L N MTS  + P + T+  L+  + K   V  A  +   M  MG 
Sbjct: 277 IQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGV 336

Query: 512 SVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             DV     LM  Y     +  A +    M + G + + F    L +   K    + AK 
Sbjct: 337 EPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQ 396

Query: 571 LLETYVESAAKVDLVLYTSV---LAHLVRCQDEQN 602
           L    +      D V Y ++   L  L R ++ Q+
Sbjct: 397 LFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQD 431



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 165/386 (42%), Gaps = 11/386 (2%)

Query: 211 RDFDGMLSLFDEMVHDSSKNGI----SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           R+ D  L+ F+ M+H      I     L SA  ++ QY      L       K++  +  
Sbjct: 73  RNIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLS------KQMELAGL 126

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
             D  + ++L+  F +      AF ++  M K     D  T+  +I  L K G+   A++
Sbjct: 127 SPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVE 186

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
            F + +    +P+   + ++++ + K G    +  ++ +M+  G +P+   Y  LI+S  
Sbjct: 187 FFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLC 246

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K   ++ AL ++  M+     P+   +  +I+      +   A ++  +M     +P   
Sbjct: 247 KDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIF 306

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           T++ L++     G+V  A  ++ +MT  G+ P + TY++L+   + R  +  A K+   M
Sbjct: 307 TFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAM 366

Query: 507 KTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
            T G   D  + ++L+  Y K   +D A +    M   G+  +N     L     +    
Sbjct: 367 ITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRL 426

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVL 591
             A+ L +    +    DL  Y+ +L
Sbjct: 427 REAQDLFKNMHSNGNLPDLFTYSMLL 452



 Score = 95.9 bits (237), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 100/227 (44%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           F  ++   CK D  SYN+L+  +       +A +++  M     + D   Y  +I  L +
Sbjct: 363 FDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQ 422

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            GRL  A  LF+ M      P    ++ L+D   K G L  + +++  MQ    +P   M
Sbjct: 423 LGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAM 482

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y  LI++  K G L  A +L+ E+ + G  PN  ++T II +  K G LD A+  F +ME
Sbjct: 483 YNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNME 542

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
             G  P   +Y+ ++           A +L   M   G      T T
Sbjct: 543 GDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGTTT 589



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 5/216 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L     +++  D    LF+EM+H   + + ++    YN +I  L +  +L  +   F
Sbjct: 378 YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVN----YNTLIHGLCQLGRLREAQDLF 433

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           K +  +    D  +Y++L+  F  +G   KAF ++  M+      D + Y ++I ++ K 
Sbjct: 434 KNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKF 493

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G L  A KLF E+  +   P+  I+ ++++++ K G LD +++ +  M+G G  P    Y
Sbjct: 494 GNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSY 553

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
             +I  + +      A +L  EMR  GF    G  T
Sbjct: 554 NVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGTTT 589


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 167/372 (44%), Gaps = 6/372 (1%)

Query: 218 SLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           +L+DE++    S N +S    YN +I    + D +  +   +K++LD+    +  ++ +L
Sbjct: 388 NLWDEVIAKGISPNVVS----YNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTIL 443

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +  KG    AF I+  M+        +T  ++I  L K+GR      LF +   + F
Sbjct: 444 MDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGF 503

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   + +++D   K G ++ +  VY EM   G  PS   Y SLI+ + K   +D AL+
Sbjct: 504 VPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALK 563

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L ++M+  G + +   +  +I+   K   +  A  +  ++  AG  P    Y+ ++    
Sbjct: 564 LLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFK 623

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
           +   V+ A+ LY  M + G+   L TYT+L+  L K   +  A+ I  EM + G   D  
Sbjct: 624 NMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDR 683

Query: 517 ASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           A  VL+  +   G  ++A + L  M    +  +  I   L     K    + A  L +  
Sbjct: 684 AHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEM 743

Query: 576 VESAAKVDLVLY 587
           ++     D + Y
Sbjct: 744 LDRGLVPDNITY 755



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/503 (21%), Positives = 203/503 (40%), Gaps = 51/503 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ES 295
            Y+ +I    K   +E ++  + ++     +    S N ++  +L       AF ++ ++
Sbjct: 300 TYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDA 359

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           +E G  ++   T+  ++  L K G+++ A  L+ E+  +   P+   + +++    +   
Sbjct: 360 LESGLANV--FTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDN 417

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           ++ + KVY EM   G  P+A  +  L++ Y K G ++ A  ++  M+ A   P      +
Sbjct: 418 INAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGI 477

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           II+   K+G+      +F      GF+PT   Y+ +++     G ++ A  +Y  M   G
Sbjct: 478 IIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVG 537

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHAL 534
           + P   TYT+L+    K   +D+A K+L +MK  G  +D+ A   L+  + K   +  A 
Sbjct: 538 ITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAH 597

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             L  +  +G+  N FI   +          E A  L +  V      DL  YTS++  L
Sbjct: 598 ELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGL 657

Query: 595 VRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGA 654
           ++     + R L A    T+  +   L      P+ R                       
Sbjct: 658 LK-----SGRLLYASDIHTEMLSKGIL------PDDRAHT-------------------- 686

Query: 655 ARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALI 714
                 VL+N L   GQ   AR + +      + P  ++++  IA      NL       
Sbjct: 687 ------VLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNL------- 733

Query: 715 AVMHTLHRFRKRMLYYGVVPRRI 737
                  R    ML  G+VP  I
Sbjct: 734 ---QEAFRLHDEMLDRGLVPDNI 753



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 165/371 (44%), Gaps = 1/371 (0%)

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           M +D+ ++G++    +N ++ +L K  K+  +   + +V+      +  SYN ++     
Sbjct: 355 MFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCR 414

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
           K     A ++Y+ M     + +  T+ +++    K G ++ A  +F  MK+ N  P+   
Sbjct: 415 KDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTT 474

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402
              ++  + KAGR      ++ +    G  P+   Y ++I+ + K G ++ A  ++ EM 
Sbjct: 475 LGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMC 534

Query: 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             G  P+   +T +I+   K   +D+A+ +  DM+R G       Y  L++       + 
Sbjct: 535 EVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMK 594

Query: 463 SAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVL 521
           SA +L N +  AGL P    Y +++T       V+ A  +  +M   G   D+   + ++
Sbjct: 595 SAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLI 654

Query: 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
              +K G + +A      M S GI  ++     L         +E+A+ +LE        
Sbjct: 655 DGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMI 714

Query: 582 VDLVLYTSVLA 592
             +++Y +++A
Sbjct: 715 PSVLIYNTLIA 725



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 140/330 (42%), Gaps = 3/330 (0%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           + P    + +L D   +  D +   S+F  M      N +   +    +I+ L KA +  
Sbjct: 433 FTPNAVTFTILMDGYFKKGDIENAFSIFHRM---KDANILPTDTTLGIIIKGLCKAGRSF 489

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
                F K +          YN ++  F+ +G    A  +Y  M +   +    TY  +I
Sbjct: 490 EGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLI 549

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
               K   +D A+KL  +MK +  +     + +L+D   K   + ++ ++  E++G G  
Sbjct: 550 DGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLS 609

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+  +Y S+I  +     ++ A+ L+ +M   G   +   +T +I+   KSG+L  A  I
Sbjct: 610 PNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDI 669

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
            T+M   G LP    ++ L+    + GQ ++A K+   M    + P +  Y  L+    K
Sbjct: 670 HTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFK 729

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
              +  A ++  EM   G   D    D+L+
Sbjct: 730 EGNLQEAFRLHDEMLDRGLVPDNITYDILV 759



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 126/267 (47%), Gaps = 2/267 (0%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
           LD   Y + +  L        A+ L +EM+   + P    F S++ +  K G +  ++++
Sbjct: 191 LDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRL 250

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
             +M  CG   +  +  SL++ Y   G L +AL L +E+  +G  PN   ++++I+   K
Sbjct: 251 KDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCK 310

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           +G ++ A   +++M+  G   +  + + +LE +       +A  ++N    +GL   + T
Sbjct: 311 NGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGL-ANVFT 369

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMG 541
           +  LL+ L K   ++ A  +  E+   G S + VS +++++ + +  +++ A +  + M 
Sbjct: 370 FNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEML 429

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESA 568
            +G   N      L +   K    E+A
Sbjct: 430 DNGFTPNAVTFTILMDGYFKKGDIENA 456



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 3/229 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
            P    Y  L D   +  + D  L L ++M     K  I    AY  +I    K   ++ 
Sbjct: 539 TPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIK---AYGTLIDGFCKRRDMKS 595

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++    ++  +    +   YN ++T F N     +A ++Y+ M       D  TY  +I 
Sbjct: 596 AHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLID 655

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L KSGRL  A  +  EM  +   P       L++ +   G+ + + K+  +M G    P
Sbjct: 656 GLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIP 715

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           S  +Y +LI  + K G L  A RL DEM   G  P+   + +++    K
Sbjct: 716 SVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFK 764



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 103/289 (35%), Gaps = 54/289 (18%)

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           LL +  +SG    A+ L   M +AG  P   T+T+++T   K   V  A ++  +M   G
Sbjct: 202 LLCLKPNSGY---ALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCG 258

Query: 511 YSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            S++++ +  LM  Y   G++  AL  +  +  SG+  N      L + C KN   E A 
Sbjct: 259 KSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAF 318

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPE 629
                      +  +    S+L   ++CQ  QN                           
Sbjct: 319 EFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNA-------------------------- 352

Query: 630 QRKQPVLSFVREFFHGIDYELEEGAARYFV-NVLLNYLVLMGQINRARCVWKVAYENKLF 688
                        F   +  LE G A  F  N LL++L   G++N A  +W       + 
Sbjct: 353 -------------FTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGIS 399

Query: 689 PKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRI 737
           P  + ++  I       N++             +  K ML  G  P  +
Sbjct: 400 PNVVSYNNIILGHCRKDNINAAC----------KVYKEMLDNGFTPNAV 438


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 147/329 (44%), Gaps = 4/329 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L + D MV +     +  F+ YN V+  L K  +LE +     +++D  C  D  ++N L
Sbjct: 306 LKVMDVMVQEGHDPDV--FT-YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 362

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +          +A ++   +     S D  T+ ++I +L K G    A++LF+EMK    
Sbjct: 363 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 422

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + +L+D++   G+L  ++ +  +M+  G   S   Y ++I+   K  +++ A  
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++D+M + G   N   F  +I+   K  K+D A  +   M   G  P   TY+ +L  + 
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYC 542

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G +  A  +  +MT+ G    + TY  L+  L K     VA K+L  M+  G      
Sbjct: 543 KQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPK 602

Query: 517 ASD-VLMVYIKDGSVDHALRWLRFMGSSG 544
           A + VL    +  ++  AL   R M   G
Sbjct: 603 AYNPVLQSLFRRNNIRDALSLFREMAEVG 631



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 154/349 (44%), Gaps = 14/349 (4%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H+  ALKV++              Q  + P    Y ++ + L ++   +    + ++MV 
Sbjct: 301 HVGHALKVMD-----------VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVD 349

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
                 I+ F   N +I  L   ++LE +    ++V       D  ++N+L+      G 
Sbjct: 350 RGCLPDITTF---NTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGD 406

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           P+ A  ++E M+   C+ D  TY  +I +L   G+L  A+ L ++M+      S   + +
Sbjct: 407 PHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNT 466

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           ++D + K  R++ + +V+ +M   G   +A  + +LI+   K  K+D A  L ++M   G
Sbjct: 467 IIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEG 526

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +PN   +  I+  + K G +  A  I   M   GF     TY  L+     +G+   A+
Sbjct: 527 LQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVAL 586

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           K+   M   G+RP    Y  +L  L +R  +  A  +  EM  +G   D
Sbjct: 587 KVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPD 635



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 158/394 (40%), Gaps = 36/394 (9%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I    K  ++E +    ++ +    + D  +YN  +           A ++ + M +
Sbjct: 255 NVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQ 314

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY +++  L K+G+L+ A  +  +M +R   P    F +L+ ++    RL+ 
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++ +  ++   G  P    +  LI +  K G    ALRL++EM+ +G  P+   +  +I+
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTY------------------------------ 448
           +    GKL  A+ +  DME  G   +  TY                              
Sbjct: 435 NLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494

Query: 449 -----SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
                + L++      ++D A  L N M S GL+P   TY ++LT   K+  +  AA IL
Sbjct: 495 NAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554

Query: 504 LEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
             M   G+ VDV     L+  + K G    AL+ LR M   G+R        + +S  + 
Sbjct: 555 ETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRR 614

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                A  L     E     D + Y  V   L R
Sbjct: 615 NNIRDALSLFREMAEVGEPPDALTYKIVFRGLCR 648



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 126/282 (44%), Gaps = 1/282 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I  L K     ++   F+++ +S C  D  +YN L+    + G   KA ++ + M
Sbjct: 393 TFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 452

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E   C     TY  +I  L K  R++ A ++F +M  +    +   F +L+D + K  ++
Sbjct: 453 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 512

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D +  +  +M   G +P+   Y S++  Y K G +  A  + + M   GF  +   +  +
Sbjct: 513 DDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 572

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+G+  +A+ +   M   G  PTP  Y+ +L+       +  A+ L+  M   G 
Sbjct: 573 INGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGE 632

Query: 477 RPGLSTYTALLTLLAK-RKLVDVAAKILLEMKTMGYSVDVSA 517
            P   TY  +   L +    +  A   +LEM   G+  + S+
Sbjct: 633 PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSS 674



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 170/415 (40%), Gaps = 4/415 (0%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L +VL E      + S++ EM     K  +  F   N +++ L +A ++  +    +
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTF---NTLMKALCRAHQVRTAVLMLE 205

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++       D  ++  LM  F+ +G    A  +   M +  CS    T  ++I    K G
Sbjct: 206 EMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLG 265

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R++ A+   Q+     F P    + + V+ + +   +  ++KV   M   GH P    Y 
Sbjct: 266 RVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 325

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            ++    K G+L+ A  + ++M   G  P+   F  +I +     +L+ A+ +   +   
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   T++ L+      G    A++L+  M ++G  P   TY  L+  L     +  A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 500 AKILLEMKTMGY-SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +L +M++ G     ++ + ++    K   ++ A      M   GI  N      L + 
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
             K+   + A  L+   +    + + + Y S+L H  +  D +    ++  ++A 
Sbjct: 506 LCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTAN 560



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/436 (20%), Positives = 177/436 (40%), Gaps = 10/436 (2%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
            +  AL+   D D +L +   A  +  + PG E Y  +   L      D M  L  EM  
Sbjct: 43  QLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRR 102

Query: 226 DSSKNGISLFSAYNRVIQYLAKA---DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           +  +  + L   ++ +  Y  +    D +++     + +     + DT  YN L+ + + 
Sbjct: 103 EGHQ--VKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFG--IQADTVVYNHLLNVLV- 157

Query: 283 KGLPYKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
           +G   K  E +Y  M       D  T+  ++ +L ++ ++  A+ + +EM  R   P   
Sbjct: 158 EGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDET 217

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            F +L+    + G ++ +++V   M   G   +      LI  Y K G+++ AL    + 
Sbjct: 218 TFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQE 277

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              GF P+   +   +    ++  +  A+ +   M + G  P   TY+ ++     +GQ+
Sbjct: 278 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 337

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           + A  + N M   G  P ++T+  L+  L     ++ A  +  ++   G S DV   ++L
Sbjct: 338 EEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 397

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +    K G    ALR    M +SG   +      L ++         A  LL+    +  
Sbjct: 398 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 581 KVDLVLYTSVLAHLVR 596
               + Y +++  L +
Sbjct: 458 PRSTITYNTIIDGLCK 473



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 6/230 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D L +    +    +FD+M +   S+N I+    +N +I  L K  K++ ++   
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT----FNTLIDGLCKDKKIDDAFGLI 519

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            +++    + +  +YN ++T +  +G   KA +I E+M      +D  TY  +I  L K+
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 579

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR   A+K+ + M+ +  RP+   +  ++ S+ +   +  ++ ++ EM   G  P A  Y
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTY 639

Query: 379 VSLIESYAKAGK-LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             +     + G  +  A     EM   GF P F  F M+ E     G  D
Sbjct: 640 KIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDD 689



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 123/330 (37%), Gaps = 40/330 (12%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P   +Y  +I      G LD    L  EMR  G +   G+    ++S+      D A+ +
Sbjct: 72  PGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDL 131

Query: 433 FTDMERA--GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
             +  +   G       Y+ LL +     ++     +Y+ M + G++P + T+  L+  L
Sbjct: 132 ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKAL 191

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNN 549
            +   V  A  +L EM + G + D +    LM  ++++GS++ ALR    M   G     
Sbjct: 192 CRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 251

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609
             V  L     K    E A   ++  +    + D + Y + +  L  CQ++         
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL--CQND--------- 300

Query: 610 LSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLM 669
                H  HA               V+  + +  H  D         +  N+++N L   
Sbjct: 301 -----HVGHAL-------------KVMDVMVQEGHDPDV--------FTYNIVVNCLCKN 334

Query: 670 GQINRARCVWKVAYENKLFPKAIVFDQHIA 699
           GQ+  A+ +     +    P    F+  IA
Sbjct: 335 GQLEEAKGILNQMVDRGCLPDITTFNTLIA 364


>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
 gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
 gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 177/376 (47%), Gaps = 7/376 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           + ++ D+L+E    D    L+ + + +    G+S+ S  +  +I   AK    E +   F
Sbjct: 95  FGLVIDMLSEDNGCD----LYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESF 150

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-AFEIYESMEKGECSLDGSTYELMIPSLAK 317
            ++ + DC+ D  +YNV++ + + + + +  AF +Y  M K  CS +  T+ +++  L K
Sbjct: 151 GRMKEFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYK 210

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            GR   A K+F +M  R   P+   +  L+  + + G  D + K++ EMQ  G+ P +  
Sbjct: 211 KGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVA 270

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           + +L++ + K G++  A  L       GF      ++ +I+   ++ +   A  ++ +M 
Sbjct: 271 HNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANML 330

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           +    P    Y+ L++  + +G+++ A+KL +SM S G+ P    Y A++  L  R L++
Sbjct: 331 KKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLE 390

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
               + LEM       D     +L+  + ++G V  A      +  SG   +      L 
Sbjct: 391 EGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALI 450

Query: 557 ESCMKNALYESAKPLL 572
           +   K+   + A+ LL
Sbjct: 451 DGLCKSGELKEARLLL 466



 Score = 92.8 bits (229), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 160/349 (45%), Gaps = 8/349 (2%)

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVL 262
           F +L +     G  S   +M  D +  GIS     Y  +I  L +    + +   F ++ 
Sbjct: 201 FGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQ 260

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
            S    D+ ++N L+  F   G   +AFE+    EK    L    Y  +I  L ++ R  
Sbjct: 261 TSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYT 320

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A +L+  M ++N +P   ++  L+  + KAG+++ ++K+   M   G  P    Y ++I
Sbjct: 321 QAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVI 380

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           ++    G L+    L  EM      P+    T++I S  ++G +  A  IFT++E++G  
Sbjct: 381 KALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCS 440

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSM-----TSAGLRPGLSTYTALLTLLAKRKLVD 497
           P+ +T++ L++    SG++  A  L + M      S  LR   S   +  T++    ++ 
Sbjct: 441 PSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFDTMVESGSILK 500

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI 545
            A + L      G S D+ + +VL+  + + G +D AL+ L  +   G+
Sbjct: 501 -AYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGL 548



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 163/353 (46%), Gaps = 17/353 (4%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           +V G   Y  L D L  +R +     L+  M+  + K  I L   Y  +IQ L+KA K+E
Sbjct: 299 FVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIIL---YTILIQGLSKAGKIE 355

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +      +       DT  YN ++     +GL  +   +   M + E   D  T+ ++I
Sbjct: 356 DALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILI 415

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
            S+ ++G +  A ++F E+++    PS   F +L+D + K+G L  +  +  +M+    R
Sbjct: 416 CSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEV--GR 473

Query: 373 PSAPMYVSL-------IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           P A +++ L        ++  ++G +  A R        G  P+   + ++I    ++G 
Sbjct: 474 P-ASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGD 532

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           +D A+ +   ++  G  P   TY+ L+      G+ + A KL+ +      R   + Y +
Sbjct: 533 IDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDD--FRHSPAVYRS 590

Query: 486 LLTLLAKRKLVDVAAKILLE-MKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537
           L+T   +++ V VA  + ++ +K +    D +A+++   + K+G  + ALR L
Sbjct: 591 LMTWSCRKRKVLVAFNLWMKYLKKISCLDDETANEIEQCF-KEGETERALRRL 642



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 125/281 (44%), Gaps = 12/281 (4%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           NR    + ++  +  +Y       D+    D  SYNVL+  F   G    A ++   ++ 
Sbjct: 486 NRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQL 545

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              S D  TY  +I  L + GR + A KLF    + +FR S  ++ SL+    +  ++  
Sbjct: 546 KGLSPDSVTYNTLINGLHRVGREEEAFKLF--YAKDDFRHSPAVYRSLMTWSCRKRKVLV 603

Query: 359 SMKV---YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  +   Y++   C    +A    + IE   K G+ + ALR   E+         G +T+
Sbjct: 604 AFNLWMKYLKKISCLDDETA----NEIEQCFKEGETERALRRLIELDTRKDELTLGPYTI 659

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK--LYNSMTS 473
            +    +SG+   A+ +F+ +     L TP +   L+       Q+D+A++  LY    +
Sbjct: 660 WLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHGLCKREQLDAAIEVFLYTLDNN 719

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
             L P +  Y  L +LL   + +++ +++   M+  GY+VD
Sbjct: 720 FKLMPRVCNYL-LSSLLESTEKMEIVSQLTNRMERAGYNVD 759


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 161/361 (44%), Gaps = 15/361 (4%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L LF   ++    VP    Y  +     +    D    L +E    SS        A
Sbjct: 87  DKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSD-----VIA 141

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLD----SDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
              V +   KA +++ +Y   + +LD       K D  ++NV++  F   G   +A+E+ 
Sbjct: 142 ITSVARGFCKAQRVDEAY---QLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEML 198

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF--RPSFNIFASLVDSMG 351
           E++    C  +  TY  +I    KSG L  A++LF+ +  R+    P+   F +L+  + 
Sbjct: 199 ETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLC 258

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           KA RL+ + ++  +M+    R     Y +L++   K G+     R+++EM   G  P+  
Sbjct: 259 KADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVV 318

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +T ++ +H K+G L  A  +   M   G  P  +TY+ LLE    +G+V +A + +  +
Sbjct: 319 TYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKI 378

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSV 530
                 P    Y+AL+    K  LVD A K  +EM     + D +   +L+ +  K G  
Sbjct: 379 LRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRT 438

Query: 531 D 531
           D
Sbjct: 439 D 439



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 174/397 (43%), Gaps = 25/397 (6%)

Query: 107 KGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH 166
           +GI+        ++++ G  +  L   A+    E+   +   PE  T    ++   KM  
Sbjct: 62  RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDR 121

Query: 167 ITQALKVINDSDTS----LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDE 222
           + QA +++ +S       +++   A+        DE Y +L D++ +             
Sbjct: 122 LDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKK------------ 169

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
               S+K  I    A+N +I    KA ++  +Y   + ++   C  +  +Y  L+  F  
Sbjct: 170 ----SAKPDIV---AWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCK 222

Query: 283 KGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
            G   +A ++++ +   +   + +  T+  +I  L K+ RL+ A +L ++MK R+ R   
Sbjct: 223 SGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADT 282

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             + +L+D + K GR     +V+ EM   G  PS   Y +L+ ++ KAG L  A ++   
Sbjct: 283 FTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRS 342

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M   G  P+   +T+++E   ++GK+  A   F  + R    P    YS L+     +  
Sbjct: 343 MVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAAL 402

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           VD A+K Y  M    L P  +T   L+ +L KR   D
Sbjct: 403 VDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 158/363 (43%), Gaps = 12/363 (3%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           ++ +I  L KA +L  +  C+ ++L+  C  + +  N+L+      G   +A  I+  + 
Sbjct: 6   FSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIFRGI- 64

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR--PSFNIFASLVDSMGKAGR 355
             +CS    T  ++I    +   LD A++LF EM E+NF   P    + +++    K  R
Sbjct: 65  --QCSPSVITLNILINGFCELQLLDKALELFHEM-EKNFALVPEATTYTAIIKCYCKMDR 121

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR-LWDEMRIAGFRPNFGLFT 414
           LD + ++  E   C     A    S+   + KA ++D A + L D +     +P+   + 
Sbjct: 122 LDQARQLLEESSCCSSDVIA--ITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWN 179

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           +II    K+G++  A  +   +   G +P   TY+ L++    SG +  A++L+  ++S 
Sbjct: 180 VIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSR 239

Query: 475 G--LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
                P + T+ AL++ L K   ++ A +++ +MK      D      LM    K G   
Sbjct: 240 DHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTS 299

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              R    M   G   +      L  +  K    + A+ ++ + V      D+  YT +L
Sbjct: 300 EVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLL 359

Query: 592 AHL 594
             L
Sbjct: 360 EGL 362



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 14/252 (5%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   +  LI    KAG+L  A+  +++M      PN     +++ S  ++GK+D AM+I
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GLRPGLSTYTALLTLLA 491
           F  ++ +   P+  T + L+        +D A++L++ M     L P  +TYTA++    
Sbjct: 61  FRGIQCS---PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM-----GSSGIR 546
           K   +D A ++L E       V ++ + V   + K   VD A + L  M         I 
Sbjct: 118 KMDRLDQARQLLEESSCCSSDV-IAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIV 176

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
             N I+    ++      YE    +LET V      + V YT+++    +  +      L
Sbjct: 177 AWNVIIHGFCKAGRVREAYE----MLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 607 MAILSATKHKAH 618
             +LS+  H A 
Sbjct: 233 FKVLSSRDHHAE 244


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 149/322 (46%), Gaps = 14/322 (4%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K D  +YN LM  + ++   ++A E++  M K     D   Y ++I    K+  +D A+ 
Sbjct: 297 KPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMV 356

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           LF+E+  +N  P+   + SL+D +  +GR+    K+  EM G    P    Y  LI++  
Sbjct: 357 LFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALC 416

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K G++  AL +   M   G +PN   +  +++ +     +++A  IF  M ++G  P   
Sbjct: 417 KEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDIL 476

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            Y+ L+  +  +  VD A+ L+  M    L P +++Y +L+  L     +    ++L EM
Sbjct: 477 NYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEM 536

Query: 507 KTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI----RTNNFIVRQLF----- 556
              G S DV   ++L+  + K    D A+   R +   GI     TN+ IV  L      
Sbjct: 537 CDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIVDNLCKGEKL 595

Query: 557 ---ESCMKNALYESAKPLLETY 575
              E  +K+ L     P ++TY
Sbjct: 596 KMAEDALKHLLMHGCSPNVQTY 617



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 163/368 (44%), Gaps = 38/368 (10%)

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320
           +L S  + +  ++N ++  F   G+ +KA +  +++       D  TY  +I  L+K+G+
Sbjct: 116 ILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQ 175

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           + AA+ L QEM++ + +P+  ++++L+D + K G +  ++ +  ++   G    A  Y S
Sbjct: 176 IKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNS 235

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI+     G+     +L  +M      P+   F ++I++  K G++  A  +   M + G
Sbjct: 236 LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRG 295

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA- 499
             P   TY+ L+E + S   V  A +L+N M   GL P +  Y  L+    K K+VD A 
Sbjct: 296 EKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAM 355

Query: 500 ----------------------------------AKILLEMKTMGYSVDVSASDVLM-VY 524
                                              K+L EM       DV   ++L+   
Sbjct: 356 VLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDAL 415

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVD 583
            K+G +  AL  L  M   G++ N      + +  C++N +   AK +    V+S  + D
Sbjct: 416 CKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNV-NVAKDIFNRMVKSGLEPD 474

Query: 584 LVLYTSVL 591
           ++ Y  ++
Sbjct: 475 ILNYNVLI 482



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 156/367 (42%), Gaps = 2/367 (0%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           DG +S    +     + GI L +  YN +I       + +       K++  +   D  +
Sbjct: 208 DGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYT 267

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +N+L+     +G   +A  +   M K     D  TY  ++        +  A +LF  M 
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMV 327

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +R   P    +  L+D   K   +D +M ++ E+      P+   Y SLI+    +G++ 
Sbjct: 328 KRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRIS 387

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
              +L DEM  +   P+   + ++I++  K G++  A+ +   M + G  P   TY+ ++
Sbjct: 388 HVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMM 447

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
           + +     V+ A  ++N M  +GL P +  Y  L+    K ++VD A  +  EM+     
Sbjct: 448 DGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLI 507

Query: 513 VDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D+++ + L+  + + G + H    L  M  SG   +      L ++  K   ++ A  L
Sbjct: 508 PDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISL 567

Query: 572 LETYVES 578
               VE 
Sbjct: 568 FRQIVEG 574



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 144/333 (43%), Gaps = 5/333 (1%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D ++ LF+    ++  VP    Y  L D L  S     +  L DEM H S++    +   
Sbjct: 352 DEAMVLFKELCNKNL-VPTIASYNSLIDGLCNSGRISHVKKLLDEM-HGSAQPPDVV--T 407

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I  L K  ++  +      ++    K +  +YN +M  +  +     A +I+  M 
Sbjct: 408 YNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMV 467

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K     D   Y ++I    K+  +D AI LF+EM+ +N  P    + SL+D +   GR+ 
Sbjct: 468 KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIP 527

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
              ++  EM   G  P    Y  L++++ K    D A+ L+ ++ + G  P+F     I+
Sbjct: 528 HVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIV 586

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           ++  K  KL +A      +   G  P   TY+ L+      G    AM L + M      
Sbjct: 587 DNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRP 646

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           P   T+  ++ +L +R   D A K+  EM   G
Sbjct: 647 PDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 120/571 (21%), Positives = 213/571 (37%), Gaps = 64/571 (11%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           M+F  L+  ++      LFD+  + +  NG+S        +  L + +K           
Sbjct: 140 MIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEK----------- 188

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
             S  + +   Y+ L+      G    A  +   + +    LD  TY  +I      GR 
Sbjct: 189 --SSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRW 246

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
               +L  +M   N  P    F  L+D++ K GR+  +  V   M   G +P    Y +L
Sbjct: 247 QEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           +E Y     +  A  L++ M   G  P+   + ++I+ + K+  +D AM +F ++     
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 442 LPTPSTYSCLL-----------------EMHASS------------------GQVDSAMK 466
           +PT ++Y+ L+                 EMH S+                  G++  A+ 
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YI 525
           +   M   G++P + TY A++     R  V+VA  I   M   G   D+   +VL+  Y 
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYC 486

Query: 526 KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585
           K   VD A+   + M    +  +      L +           + LL+   +S    D++
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 586 LYTSVLAHLVRCQDEQNE----RHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVRE 641
            Y  +L    + Q         R ++  +    +  HA +  L  G E+ K    +    
Sbjct: 547 TYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKG-EKLKMAEDALKHL 605

Query: 642 FFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWS 701
             HG    ++         +L+N L   G    A  +     +N   P AI F+  I   
Sbjct: 606 LMHGCSPNVQT------YTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVL 659

Query: 702 LDVRNLSVGAALI---AVMHTLHRFRKRMLY 729
           L  RN +  A  +    +   L    KR++Y
Sbjct: 660 LQ-RNETDKAEKLREEMIARGLVNIEKRLMY 689



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 121/293 (41%), Gaps = 11/293 (3%)

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            +D A+  F  M      P  ++F  L+ ++ + G   T++ ++ ++Q  G  PS   + 
Sbjct: 35  NVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFT 94

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            LI  Y        A  L   +  +G++PN   F  II     +G +  A+    ++   
Sbjct: 95  ILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQ 154

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G+L    TY  L+   + +GQ+ +A+ L   M  + ++P L  Y+AL+  L K   V  A
Sbjct: 155 GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDA 214

Query: 500 AKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW------LRFMGSSGIRTNNFIVR 553
             +  ++   G  +D    + L+    DG      RW      L  M    +  +++   
Sbjct: 215 LGLCSQIGERGILLDAVTYNSLI----DGCCSVG-RWQEVTQLLTKMVRENVDPDDYTFN 269

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            L ++  K      A+ +L    +   K D+V Y +++      ++    R L
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAREL 322



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/354 (18%), Positives = 139/354 (39%), Gaps = 10/354 (2%)

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
           CF +++       T  ++ L+   +  G    A  ++  ++    S   +T+ ++I    
Sbjct: 42  CFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYF 101

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
                  A  L   + +  ++P+   F ++++     G +  ++     +   G+     
Sbjct: 102 HQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQF 161

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y +LI   +K G++  AL L  EM  +  +PN  +++ +I+   K G +  A+ + + +
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G L    TY+ L++   S G+     +L   M    + P   T+  L+  L K   +
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
             A  +L  M   G   D+   + LM  Y    +V  A      M   G+  +      L
Sbjct: 282 LEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVL 341

Query: 556 FESCMKNALYESA---------KPLLETYVESAAKVDLVLYTSVLAHLVRCQDE 600
            +   K  + + A         K L+ T     + +D +  +  ++H+ +  DE
Sbjct: 342 IDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDE 395


>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 484

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/483 (21%), Positives = 194/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E    +GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMVRLSVPTEAGHYGVLIENFCKAGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
                L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SXFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 182/432 (42%), Gaps = 41/432 (9%)

Query: 131 NASAVAKIVEVVNRWKWGPELETQLDKLQ-----FVPKMVH-ITQALKVINDSDTSLSLF 184
           N  A   +++++ R K   EL++ L K+Q         M+H    +         SL  F
Sbjct: 215 NTDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAF 274

Query: 185 RWAKRQSWYVPG--DECYVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFS----- 236
              K +  Y PG  D  Y  +   L +++  D   +LF +M+++  S N ++  S     
Sbjct: 275 NLMK-EMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCF 333

Query: 237 --------------------------AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
                                      Y  VI  L K   +E +Y   +K+ ++ C+ + 
Sbjct: 334 FLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNI 393

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
            +YN L+        P +A E+   ME+G    +  TY ++   L K  RLD A ++F E
Sbjct: 394 YTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNE 453

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
              R  +P+   + +L++   +  RL  +M +  EM      P    Y +LI+   +  +
Sbjct: 454 ALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQ 513

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
           L  ALR+ DEM   G+  NF    ++    A+ G    A   +  M+  GF  + S Y  
Sbjct: 514 LPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYL 573

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            +   +++G+++ A  L   M + G  P L+TY  ++    ++  +D A  +L  M   G
Sbjct: 574 AIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENG 633

Query: 511 YSVDVSASDVLM 522
              D  + ++L+
Sbjct: 634 IGPDTGSYNILI 645



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/482 (20%), Positives = 193/482 (40%), Gaps = 70/482 (14%)

Query: 134 AVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWY 193
            V KI + +   +W    +  L+ +        + + L +  D+  +L  F+WA +Q  Y
Sbjct: 153 TVNKICKAIEEDQWECLQDNFLNSMAQDLNPDAVVKVLNLQTDAQNALRFFQWADKQEGY 212

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS--------------------KNGIS 233
               + Y  + D+L  ++ F  + SL  +M                         K  + 
Sbjct: 213 DHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLE 272

Query: 234 LF--------------SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
            F              +AYN V+  L K  KL+M+   F +++++    +  +Y  ++  
Sbjct: 273 AFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQC 332

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           F  K     A ++ + M +   + D  TY ++I +L K   ++ A  + Q+M+E    P+
Sbjct: 333 FFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPN 392

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              + +L+  +    R + ++++   M+  G  P+   Y  L     K  +LD A  +++
Sbjct: 393 IYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFN 452

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           E    G +PN   +  ++  + +  +L  AM I  +M +    P   TY+ L++      
Sbjct: 453 EALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGN 512

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK-----------RKLVD----------- 497
           Q+  A+++++ M + G      T   L   LA+           R++ D           
Sbjct: 513 QLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYY 572

Query: 498 -------------VAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSS 543
                         A  +L EM   GYS +++  + ++  + + G +D A   L FM  +
Sbjct: 573 LAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIEN 632

Query: 544 GI 545
           GI
Sbjct: 633 GI 634



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 108/240 (45%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +   L K  +L+ +   F + L    K +  +YN L+  +       +A +I + M
Sbjct: 430 TYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEM 489

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            + +C+ D  TY  +I  L +  +L  A+++  EM+ + +  +F+    L   + + G  
Sbjct: 490 HQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNH 549

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +   Y  M+  G   SA  Y   I   + AG+++ A  L  EM   G+ PN   +  +
Sbjct: 550 KDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTM 609

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   + G+LD A ++   M   G  P   +Y+ L++   + G+   A +LY +    G+
Sbjct: 610 IKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALERGV 669



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 123/282 (43%), Gaps = 8/282 (2%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           + Q L  +   + +L L    + Q    P    Y +L   L + R  D    +F+E +  
Sbjct: 399 LIQGLCAVRRPEEALELVTLME-QGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALAR 457

Query: 227 SSK-NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
             K N ++    YN ++    +  +L  +    K++  +DC  D  +Y  L+   +    
Sbjct: 458 GLKPNRVT----YNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQ 513

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
              A  +++ ME     ++  T  ++   LA+ G    A   ++ MK+R F  S + +  
Sbjct: 514 LPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYL 573

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
            +  +  AG ++ +  +  EM   G+ P+   Y ++I+ + + G+LD A  + + M   G
Sbjct: 574 AIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENG 633

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIF-TDMERAGFL-PTP 445
             P+ G + ++I+     G+   A  ++ T +ER   L P P
Sbjct: 634 IGPDTGSYNILIKEFHNQGRTQDADQLYATALERGVVLNPKP 675



 Score = 40.0 bits (92), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 506 MKTMGYS---VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
           MK MGY    +D + + VL+  +K+  +D A      M ++G+  NN     + +     
Sbjct: 277 MKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLK 336

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              E A  LL+  +++    D+V YT V++ L +
Sbjct: 337 EKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCK 370


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 200/424 (47%), Gaps = 12/424 (2%)

Query: 160 FVPKMVH---ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
           F P +V    +   L  +  +  ++ L R +  Q    P    Y  + D L + R     
Sbjct: 160 FQPNVVTYGTLINGLCKVGSTSAAIRLLR-SMEQGNCQPDVVVYTSIIDSLCKDRQVTQA 218

Query: 217 LSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
            +LF EM+H     GIS  +F+ YN +I  L    + +       ++++S    +   ++
Sbjct: 219 FNLFSEMIHQ----GISPSIFT-YNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFS 273

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            ++     +G   +A ++ + M K     +  TY  ++        +D A+K+F  M  +
Sbjct: 274 TVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCK 333

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
            F P    +++L++   K  R++ +M ++ EM      P+   Y +L+      G+L  A
Sbjct: 334 GFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDA 393

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           + L+ EM   G  P+F  + ++++   K+ +LD A+++   +E +   P    Y+ +++ 
Sbjct: 394 IALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDG 453

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +G++++A  L+++++S GL P + TYT ++  L ++ L+  A+K+  EMK  GYS +
Sbjct: 454 MCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPN 513

Query: 515 VSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
               +++   ++++      ++ L+ M + G   +      L E    + L +S K +L 
Sbjct: 514 GCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQILS 573

Query: 574 TYVE 577
            +++
Sbjct: 574 EFLQ 577



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 159/372 (42%), Gaps = 37/372 (9%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
            + +N +I+ L    K+      F K++    + +  +Y  L+      G    A  +  
Sbjct: 129 IATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLR 188

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS---FN---------- 341
           SME+G C  D   Y  +I SL K  ++  A  LF EM  +   PS   +N          
Sbjct: 189 SMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLC 248

Query: 342 ----------------------IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
                                 IF+++VD++ K G++  +  V   M   G  P+   Y 
Sbjct: 249 EWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYN 308

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +L++ +    ++D A++++D M   GF P+   ++ +I  + K  +++ AM +F +M R 
Sbjct: 309 ALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRK 368

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
             +P   TYS L+      G++  A+ L++ M + G  P   +Y  LL  L K + +D A
Sbjct: 369 ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEA 428

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +L  ++      D+    +++    + G ++ A      + S G+  N +    +   
Sbjct: 429 IALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMING 488

Query: 559 -CMKNALYESAK 569
            C +  L E++K
Sbjct: 489 LCQQGLLAEASK 500



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 136/326 (41%), Gaps = 1/326 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           + N+L+  F +      AF +   + K     + +T+  +I  L   G++   + LF +M
Sbjct: 96  TLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKM 155

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
               F+P+   + +L++ + K G    ++++   M+    +P   +Y S+I+S  K  ++
Sbjct: 156 IGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 215

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A  L+ EM   G  P+   +  +I +     +     ++  +M  +  +P    +S +
Sbjct: 216 TQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 275

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++     G+V  A  + + M   G+ P + TY AL+     R  +D A K+   M   G+
Sbjct: 276 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF 335

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           + D VS S ++  Y K   ++ A+     M    +  N      L          + A  
Sbjct: 336 APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIA 395

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           L    V      D V Y  +L +L +
Sbjct: 396 LFHEMVTRGQIPDFVSYCILLDYLCK 421



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 2/283 (0%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           LD A+  F  M   +  PS   F  L+ S+ K     T + +  +M   G  P+      
Sbjct: 40  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 99

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI S+    +L  A  +  ++   G +PN   F  +I      GK+   + +F  M   G
Sbjct: 100 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 159

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           F P   TY  L+      G   +A++L  SM     +P +  YT+++  L K + V  A 
Sbjct: 160 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAF 219

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +  EM   G S  +   + L+  + +     H    L  M +S I  N  I   + ++ 
Sbjct: 220 NLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDAL 279

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQ 601
            K      A  +++  ++   + ++V Y +++  H +R + ++
Sbjct: 280 CKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDE 322


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 144/298 (48%), Gaps = 1/298 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++  L +A KL+ ++   K++L   C +D  SYN L++    K    +AF   + M K
Sbjct: 498 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK 557

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY ++I  L    +++ AI+ + + K     P    ++ ++D   KA R + 
Sbjct: 558 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 617

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
             + + EM     +P+  +Y  LI +Y ++G+L  AL L ++M+  G  PN   +T +I+
Sbjct: 618 GQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIK 677

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
             +   +++ A  +F +M   G  P    Y+ L++ +   GQ+     L   M S  + P
Sbjct: 678 GMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP 737

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
              TYT ++   A+   V  A+++L EM+  G   D ++  + +  Y+K G V  A +
Sbjct: 738 NKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 795



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 165/365 (45%), Gaps = 19/365 (5%)

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N+L+T  +      K  E ++ + KG  S D   +   I +  K G+++ A+KLF +M+E
Sbjct: 219 NILLTSLVRANEFQKCCEAFDVVCKG-VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEE 277

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P+   F +++D +G  GR D +     +M   G  P+   Y  L++   +A ++  
Sbjct: 278 AGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGD 337

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  +  EM   GF PN  ++  +I+S  ++G L+ A+ I   M   G   T STY+ L++
Sbjct: 338 AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 397

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +  +GQ D+A +L   M S G      ++T+++ LL    + D A + + EM     S 
Sbjct: 398 GYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSP 457

Query: 514 DVSASDVLMVYI-KDGSVDHALR-WLRFMGSSGI---RTNNFIVRQLFESCMKNALYESA 568
                  L+  + K G    AL  W +F+    +   RT+N ++  L E+   +  +   
Sbjct: 458 GGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQ 517

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI-------LSATKHKAHAFL 621
           K +L         +D V Y ++++    C  ++ +   M +       L    +     +
Sbjct: 518 KEIL----GRGCVMDRVSYNTLISGC--CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 571

Query: 622 CGLFT 626
           CGLF 
Sbjct: 572 CGLFN 576



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 158/352 (44%), Gaps = 4/352 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD  L    EM+  +   G  L +    +I  L K  K   +   + + L+    +DT++
Sbjct: 440 FDSALRFVGEMLLRNMSPGGGLLTT---LISGLCKHGKHSKALELWFQFLNKGFVVDTRT 496

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
            N L+      G   +AF I + +    C +D  +Y  +I       +LD A     EM 
Sbjct: 497 SNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMV 556

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +R  +P    ++ L+  +    +++ +++ + + +  G  P    Y  +I+   KA + +
Sbjct: 557 KRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTE 616

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
                +DEM     +PN  ++  +I ++ +SG+L +A+ +  DM+  G  P  +TY+ L+
Sbjct: 617 EGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 676

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-Y 511
           +  +   +V+ A  L+  M   GL P +  YTAL+    K   +     +L EM +   +
Sbjct: 677 KGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH 736

Query: 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
              ++ + ++  Y +DG+V  A R L  M   GI  ++   ++     +K  
Sbjct: 737 PNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQG 788



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 156/360 (43%), Gaps = 8/360 (2%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCK---IDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           N ++  L +A+  E   CC  +  D  CK    D   +   +  F   G   +A +++  
Sbjct: 219 NILLTSLVRAN--EFQKCC--EAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSK 274

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+   + +  T+  +I  L   GR D A    ++M ER   P+   ++ LV  + +A R
Sbjct: 275 MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKR 334

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  +  V  EM   G  P+  +Y +LI+S+ +AG L+ A+ + D M   G       +  
Sbjct: 335 IGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNT 394

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+ + K+G+ D A  +  +M   GF     +++ ++ +  S    DSA++    M    
Sbjct: 395 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 454

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHAL 534
           + PG    T L++ L K      A ++  +    G+ VD   S+ L+  + + G +D A 
Sbjct: 455 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 514

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           R  + +   G   +      L   C      + A   L+  V+   K D   Y+ ++  L
Sbjct: 515 RIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 574



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 146/356 (41%), Gaps = 1/356 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +++ L +A ++  +Y   K++       +   YN L+  F+  G   KA EI + M
Sbjct: 321 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 380

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                SL  STY  +I    K+G+ D A +L +EM    F  +   F S++  +      
Sbjct: 381 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMF 440

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D++++   EM      P   +  +LI    K GK   AL LW +    GF  +      +
Sbjct: 441 DSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNAL 500

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    ++GKLD A  I  ++   G +    +Y+ L+       ++D A    + M   GL
Sbjct: 501 LHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGL 560

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P   TY+ L+  L     V+ A +   + K  G   DV    V++    K    +    
Sbjct: 561 KPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQE 620

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +   M S  ++ N  +   L  +  ++     A  L E         +   YTS++
Sbjct: 621 FFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 676



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 137/314 (43%), Gaps = 5/314 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCF 258
           Y  L D   E+   +  + + D MV      G+SL S+ YN +I+   K  + + +    
Sbjct: 357 YNNLIDSFIEAGSLNKAIEIKDLMV----SKGLSLTSSTYNTLIKGYCKNGQADNAERLL 412

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           K++L     ++  S+  ++ L  +  +   A      M     S  G     +I  L K 
Sbjct: 413 KEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKH 472

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G+   A++L+ +   + F        +L+  + +AG+LD + ++  E+ G G       Y
Sbjct: 473 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSY 532

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +LI       KLD A    DEM   G +P+   ++++I       K++ A+  + D +R
Sbjct: 533 NTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR 592

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G LP   TYS +++    + + +   + ++ M S  ++P    Y  L+    +   + +
Sbjct: 593 NGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSM 652

Query: 499 AAKILLEMKTMGYS 512
           A ++  +MK  G S
Sbjct: 653 ALELREDMKHKGIS 666



 Score = 43.5 bits (101), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 83/216 (38%), Gaps = 36/216 (16%)

Query: 226 DSSKNG-ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
           D  +NG +     Y+ +I    KA++ E     F +++  + + +T  YN L+  +   G
Sbjct: 589 DCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSG 648

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK------------ 332
               A E+ E M+    S + +TY  +I  ++   R++ A  LF+EM+            
Sbjct: 649 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 708

Query: 333 -----------------------ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
                                   +N  P+   +  ++    + G +  + ++  EM+  
Sbjct: 709 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 768

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           G  P +  Y   I  Y K G +  A +  DE   A 
Sbjct: 769 GIVPDSITYKEFIYGYLKQGGVLEAFKGSDEENYAA 804


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 130/254 (51%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN LM  +       KA  I+ +M +   S D  +Y ++I    K   +D A++L +EM
Sbjct: 214 TYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEM 273

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             +   P+   ++SL+D + K+G++  ++K+  EM   G  P+   Y S++++  K  ++
Sbjct: 274 HHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQV 333

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D A+ L  +M+  G +PN   +T++I+   +SGKL+ A  +F D+   G      TY+ +
Sbjct: 334 DNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVM 393

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++     G  D A+ L + M   G  P   TY  ++  L K+   ++A K+L EM    +
Sbjct: 394 IQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNF 453

Query: 512 SVDVSASDVLMVYI 525
              V+ ++ L+  I
Sbjct: 454 DGRVALTNDLIASI 467



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 172/406 (42%), Gaps = 15/406 (3%)

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
            + + D D  +SLF+ ++    +N       +N+++  L K+          +K+     
Sbjct: 37  FHNNNDVDDAVSLFNRLLQ---QNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGI 93

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR------ 320
           K +  + N+L+  F   G    AF +   + K     +  T   +I  L  +G+      
Sbjct: 94  KPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHC 153

Query: 321 ----LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
               L  A+ LF +M   N  P    F  LVD   K GR+  +  V   M   G +P   
Sbjct: 154 IVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVV 213

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y SL++ Y    +++ A  +++ M   G  P+   ++++I    K   +D AM +  +M
Sbjct: 214 TYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEM 273

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
                +P   TYS L++    SG++  A+KL + M   G  P + TY+++L  L K   V
Sbjct: 274 HHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQV 333

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           D A  +L +MK  G   ++    +L+  + + G ++ A +    +   G   N +    +
Sbjct: 334 DNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVM 393

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
            +      L++ A  LL    ++    +   Y  ++  L + +DE 
Sbjct: 394 IQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFK-KDEN 438



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  + D L ++   D  ++L  +M +   +  +     Y  +I+ L ++ KLE +
Sbjct: 315 PNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMY---TYTILIKGLCQSGKLEDA 371

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F+ +L     ++  +Y V++  F +KGL  +A  +   ME   C  +  TYE++I S
Sbjct: 372 RKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILS 431

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           L K    + A KL  EM E NF     +   L+ S+   G
Sbjct: 432 LFKKDENEMAEKLLCEMIETNFDGRVALTNDLIASIWVTG 471


>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 484

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 176/407 (43%), Gaps = 12/407 (2%)

Query: 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256
           ++ +V+L D   ++      + LF +M     +  I  + A  +VI    +  +  M+  
Sbjct: 80  EDLWVLLIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVI---LRRGRYMMAKR 136

Query: 257 CFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316
            F K+L    +    ++N+++  F   G    A   +E M+  E   D  TY  MI    
Sbjct: 137 YFNKMLSEGNEPTRHTFNIMIWGFFLSGKVETANRFFEDMKSREIMPDVVTYNTMIXGYY 196

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           +  +++ A K F EMK RN  P+   + +L+       R+D ++++  EM+G G +P+A 
Sbjct: 197 RVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGIKPNAI 256

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRP-NFGLFTMIIESHAKSGKLDIAMSIFTD 435
            Y +L+     A K+  A  +  EM      P +  +F  +I    K+G LD A  +   
Sbjct: 257 TYSTLLPGLCNAQKMSEARSILKEMVEKYITPTDNSIFLRLISGQCKAGDLDAAADVLKA 316

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LRPGL------STYTALL 487
           M R         Y  L+E +  +GQ D A+KL + +      LRP        S Y  L+
Sbjct: 317 MIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDRLIEKDIILRPQSTLHLEPSAYNPLI 376

Query: 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
             L        A  ++ ++  +G     + + ++  + ++GS D A   L+ M     R+
Sbjct: 377 EYLCNNGQTAKAESLVRQLMKLGVQDPTALNALIRGHSQEGSPDSAFELLKIMLRRKARS 436

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
                  L +S +K +    AK  L++ +E+    D  L+ SV+  L
Sbjct: 437 EKSAYDSLVQSYLKKSEPADAKAALDSMIENGHLPDPALFRSVMESL 483



 Score = 95.9 bits (237), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 138/302 (45%), Gaps = 8/302 (2%)

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M K     D   + L+I S  K+G +  ++KLFQ+M+E     +   + +L   + + GR
Sbjct: 71  MPKKGLEWDEDLWVLLIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGR 130

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              + + + +M   G+ P+   +  +I  +  +GK++TA R +++M+     P+   +  
Sbjct: 131 YMMAKRYFNKMLSEGNEPTRHTFNIMIWGFFLSGKVETANRFFEDMKSREIMPDVVTYNT 190

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I  + +  K++ A   F +M+     PT  TY+ L++ + S  +VD A++L   M   G
Sbjct: 191 MIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFG 250

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV---YIKDGSVDH 532
           ++P   TY+ LL  L   + +  A  IL EM    Y      S  L +     K G +D 
Sbjct: 251 IKPNAITYSTLLPGLCNAQKMSEARSILKEM-VEKYITPTDNSIFLRLISGQCKAGDLDA 309

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A   L+ M    + T       L E+  K   Y+ A  LL+  +E     D++L      
Sbjct: 310 AADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDRLIEK----DIILRPQSTL 365

Query: 593 HL 594
           HL
Sbjct: 366 HL 367



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 40/235 (17%)

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           +IE   +A KL+ A  +  +M   G   +  L+ ++I+S+ K+G +  ++ +F  ME  G
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDLWVLLIDSYGKAGIVQESVKLFQKMEELG 110

Query: 441 FLPTPSTYSCLLE--------MHAS---------------------------SGQVDSAM 465
              T  +Y  L +        M A                            SG+V++A 
Sbjct: 111 VERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGNEPTRHTFNIMIWGFFLSGKVETAN 170

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD---VSASDVLM 522
           + +  M S  + P + TY  ++    + K ++ A K  +EMK  G +++   V+ + ++ 
Sbjct: 171 RFFEDMKSREIMPDVVTYNTMIXGYYRVKKMEEAEKYFVEMK--GRNIEPTVVTYTTLIK 228

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
            Y+    VD ALR +  M   GI+ N      L            A+ +L+  VE
Sbjct: 229 GYVSVDRVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAQKMSEARSILKEMVE 283


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 147/329 (44%), Gaps = 4/329 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L + D MV +     +  F+ YN V+  L K  +LE +     +++D  C  D  ++N L
Sbjct: 306 LKVMDVMVQEGHDPDV--FT-YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 362

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +          +A ++   +     S D  T+ ++I +L K G    A++LF+EMK    
Sbjct: 363 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 422

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + +L+D++   G+L  ++ +  +M+  G   S   Y ++I+   K  +++ A  
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++D+M + G   N   F  +I+   K  K+D A  +   M   G  P   TY+ +L  + 
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYC 542

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G +  A  +  +MT+ G    + TY  L+  L K     VA K+L  M+  G      
Sbjct: 543 KQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPK 602

Query: 517 ASD-VLMVYIKDGSVDHALRWLRFMGSSG 544
           A + VL    +  ++  AL   R M   G
Sbjct: 603 AYNPVLQSLFRRNNIRDALSLFREMAEVG 631



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 154/349 (44%), Gaps = 14/349 (4%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H+  ALKV++              Q  + P    Y ++ + L ++   +    + ++MV 
Sbjct: 301 HVGHALKVMD-----------VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVD 349

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
                 I+ F   N +I  L   ++LE +    ++V       D  ++N+L+      G 
Sbjct: 350 RGCLPDITTF---NTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGD 406

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           P+ A  ++E M+   C+ D  TY  +I +L   G+L  A+ L ++M+      S   + +
Sbjct: 407 PHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNT 466

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           ++D + K  R++ + +V+ +M   G   +A  + +LI+   K  K+D A  L ++M   G
Sbjct: 467 IIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEG 526

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +PN   +  I+  + K G +  A  I   M   GF     TY  L+     +G+   A+
Sbjct: 527 LQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVAL 586

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           K+   M   G+RP    Y  +L  L +R  +  A  +  EM  +G   D
Sbjct: 587 KVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPD 635



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 159/394 (40%), Gaps = 36/394 (9%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I    K  ++E +    ++ +    + D  +YN  +           A ++ + M +
Sbjct: 255 NVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQ 314

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY +++  L K+G+L+ A  +  +M +R   P    F +L+ ++    RL+ 
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++ +  ++   G  P    +  LI +  K G    ALRL++EM+ +G  P+   +  +I+
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTY------------------------------ 448
           +    GKL  A+ +  DME  G   +  TY                              
Sbjct: 435 NLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494

Query: 449 -----SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
                + L++      ++D A +L N M S GL+P   TY ++LT   K+  +  AA IL
Sbjct: 495 NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554

Query: 504 LEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
             M   G+ VDV     L+  + K G    AL+ LR M   G+R        + +S  + 
Sbjct: 555 ETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRR 614

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                A  L     E     D + Y  V   L R
Sbjct: 615 NNIRDALSLFREMAEVGEPPDALTYKIVFRGLCR 648



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 127/282 (45%), Gaps = 1/282 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I  L K     ++   F+++ +S C  D  +YN L+    + G   KA ++ + M
Sbjct: 393 TFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 452

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E   C     TY  +I  L K  R++ A ++F +M  +    +   F +L+D + K  ++
Sbjct: 453 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 512

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++  +M   G +P+   Y S++  Y K G +  A  + + M   GF  +   +  +
Sbjct: 513 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 572

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+G+  +A+ +   M   G  PTP  Y+ +L+       +  A+ L+  M   G 
Sbjct: 573 INGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGE 632

Query: 477 RPGLSTYTALLTLLAK-RKLVDVAAKILLEMKTMGYSVDVSA 517
            P   TY  +   L +    +  A   +LEM   G+  + S+
Sbjct: 633 PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSS 674



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 170/415 (40%), Gaps = 4/415 (0%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L +VL E      + S++ EM     K  +  F   N +++ L +A ++  +    +
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTF---NTLMKALCRAHQVRTAVIMLE 205

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++       D  ++  LM  F+ +G    A  +   M +  CS    T  ++I    K G
Sbjct: 206 EMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLG 265

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R++ A+   Q+     F P    + + V+ + +   +  ++KV   M   GH P    Y 
Sbjct: 266 RVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 325

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            ++    K G+L+ A  + ++M   G  P+   F  +I +     +L+ A+ +   +   
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   T++ L+      G    A++L+  M ++G  P   TY  L+  L     +  A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 500 AKILLEMKTMGY-SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +L +M++ G     ++ + ++    K   ++ A      M   GI  N      L + 
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
             K+   + A  L+   +    + + + Y S+L H  +  D +    ++  ++A 
Sbjct: 506 LCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTAN 560



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/436 (20%), Positives = 177/436 (40%), Gaps = 10/436 (2%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
            +  AL+   D D +L +   A  +  + PG E Y  +   L      D M  L  EM  
Sbjct: 43  QLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRR 102

Query: 226 DSSKNGISLFSAYNRVIQYLAKA---DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           +  +  + L   ++ +  Y  +    D +++     + +     + DT  YN L+ + + 
Sbjct: 103 EGHQ--VKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFG--IQADTVVYNHLLNVLV- 157

Query: 283 KGLPYKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
           +G   K  E +Y  M       D  T+  ++ +L ++ ++  A+ + +EM  R   P   
Sbjct: 158 EGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDET 217

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            F +L+    + G ++ +++V   M   G   +      LI  Y K G+++ AL    + 
Sbjct: 218 TFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQE 277

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              GF P+   +   +    ++  +  A+ +   M + G  P   TY+ ++     +GQ+
Sbjct: 278 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 337

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           + A  + N M   G  P ++T+  L+  L     ++ A  +  ++   G S DV   ++L
Sbjct: 338 EEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 397

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +    K G    ALR    M +SG   +      L ++         A  LL+    +  
Sbjct: 398 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 581 KVDLVLYTSVLAHLVR 596
               + Y +++  L +
Sbjct: 458 PRSTITYNTIIDGLCK 473



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 6/230 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D L +    +    +FD+M +   S+N I+    +N +I  L K  K++ ++   
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT----FNTLIDGLCKDKKIDDAFELI 519

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            +++    + +  +YN ++T +  +G   KA +I E+M      +D  TY  +I  L K+
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 579

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR   A+K+ + M+ +  RP+   +  ++ S+ +   +  ++ ++ EM   G  P A  Y
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTY 639

Query: 379 VSLIESYAKAGK-LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             +     + G  +  A     EM   GF P F  F M+ E     G  D
Sbjct: 640 KIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDD 689



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 123/330 (37%), Gaps = 40/330 (12%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P   +Y  +I      G LD    L  EMR  G +   G+    ++S+      D A+ +
Sbjct: 72  PGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDL 131

Query: 433 FTDMERA--GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
             +  +   G       Y+ LL +     ++     +Y+ M + G++P + T+  L+  L
Sbjct: 132 ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKAL 191

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNN 549
            +   V  A  +L EM + G + D +    LM  ++++GS++ ALR    M   G     
Sbjct: 192 CRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 251

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609
             V  L     K    E A   ++  +    + D + Y + +  L  CQ++         
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL--CQND--------- 300

Query: 610 LSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLM 669
                H  HA               V+  + +  H  D         +  N+++N L   
Sbjct: 301 -----HVGHAL-------------KVMDVMVQEGHDPDV--------FTYNIVVNCLCKN 334

Query: 670 GQINRARCVWKVAYENKLFPKAIVFDQHIA 699
           GQ+  A+ +     +    P    F+  IA
Sbjct: 335 GQLEEAKGILNQMVDRGCLPDITTFNTLIA 364


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 166/371 (44%), Gaps = 6/371 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    KA ++  +     ++  S    D  +YN ++    + G   +A E+ + M
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSP---DVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            + +C  D  TY ++I +  +   +  A+KL  EM++R   P    +  LV+ + K GRL
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++K   +M   G +P+   +  ++ S    G+   A +L  +M   GF P+   F ++
Sbjct: 291 DEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNIL 350

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    + G L  A+ I   M + G  P   +Y+ LL       ++D A++    M S G 
Sbjct: 351 INFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC 410

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALR 535
            P + TY  +LT L K   V+ A +IL ++ + G S V ++ + V+    K G    A++
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L  M +  ++ +      L     +    + A      +     + + V + S++  L 
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGL- 529

Query: 596 RCQDEQNERHL 606
            C+  Q +R +
Sbjct: 530 -CKSRQTDRAI 539



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 125/249 (50%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++N+L+     KGL  +A +I E M +  C  +  +Y  ++    K  ++D AI+  + M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             R   P    + +++ ++ K G+++ ++++  ++   G  P    Y ++I+  AKAGK 
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A++L DEMR    +P+   ++ ++   ++ GK+D A+  F + ER G  P   T++ +
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSI 525

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +     S Q D A+     M + G +P  ++YT L+  LA   +   A ++L E+   G 
Sbjct: 526 MLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585

Query: 512 SVDVSASDV 520
               SA  V
Sbjct: 586 MKKSSAEQV 594



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 117/240 (48%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I +L +   L  +    +K+    C+ ++ SYN L+  F  +    +A E  E M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D  TY  M+ +L K G+++ A+++  ++  +   P    + +++D + KAG+ 
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++K+  EM+    +P    Y SL+   ++ GK+D A++ + E    G RPN   F  I
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSI 525

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    KS + D A+     M   G  P  ++Y+ L+E  A  G    A++L N + + GL
Sbjct: 526 MLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/428 (20%), Positives = 186/428 (43%), Gaps = 19/428 (4%)

Query: 119 HVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSD 178
           +VM+ G    +  A  +   + V++R    P++ T    L+ +     + QA++V++   
Sbjct: 176 NVMISG----YCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD--- 228

Query: 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY 238
                 R  +R  +  P    Y +L +           + L DEM     +        Y
Sbjct: 229 ------RMLQRDCY--PDVITYTILIEATCRDSGVGHAMKLLDEM---RDRGCTPDVVTY 277

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++  + K  +L+ +      +  S C+ +  ++N+++    + G    A ++   M +
Sbjct: 278 NVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR 337

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
              S    T+ ++I  L + G L  AI + ++M +   +P+   +  L+    K  ++D 
Sbjct: 338 KGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDR 397

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +++    M   G  P    Y +++ +  K GK++ A+ + +++   G  P    +  +I+
Sbjct: 398 AIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
             AK+GK   A+ +  +M      P   TYS L+   +  G+VD A+K ++     G+RP
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRP 517

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK-DGSVDHALRWL 537
              T+ +++  L K +  D A   L+ M   G   + ++  +L+  +  +G    AL  L
Sbjct: 518 NAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELL 577

Query: 538 RFMGSSGI 545
             + + G+
Sbjct: 578 NELCNKGL 585



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 103/210 (49%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN ++    K  K++ +    ++++   C  D  +YN ++T     G    A EI   +
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               CS    TY  +I  LAK+G+   AIKL  EM+ ++ +P    ++SLV  + + G++
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D ++K + E +  G RP+A  + S++    K+ + D A+     M   G +PN   +T++
Sbjct: 501 DEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTIL 560

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           IE  A  G    A+ +  ++   G +   S
Sbjct: 561 IEGLAYEGMAKEALELLNELCNKGLMKKSS 590



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 128/325 (39%), Gaps = 41/325 (12%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           + ++G L+   K  + M      P      +L+    + G+   + K+   ++G G  P 
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  +I  Y KAG+++ AL + D M ++   P+   +  I+ S   SGKL  AM +  
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M +    P   TY+ L+E       V  AMKL + M   G  P + TY  L+  + K  
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288

Query: 495 LVDV-----------------------------------AAKILLEMKTMGYSVDVSASD 519
            +D                                    A K+L +M   G+S  V   +
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFN 348

Query: 520 VLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578
           +L+ ++ + G +  A+  L  M   G + N+     L     K    + A   LE  V  
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408

Query: 579 AAKVDLVLYTSVLAHLVRCQDEQNE 603
               D+V Y ++L  L  C+D + E
Sbjct: 409 GCYPDIVTYNTMLTAL--CKDGKVE 431


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 153/333 (45%), Gaps = 8/333 (2%)

Query: 266 CKID-------TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           CK+D         +Y+VLM  F  +GL  + F++YE+M +     +   Y  +I      
Sbjct: 217 CKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCND 276

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G +D A K+F EM+E+        +  L+  + +  +   ++K+  ++   G  P+   Y
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTY 336

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
             LI  +   GK+DTA+RL+++++ +G  P    +  +I  ++K   L  A+ +  +ME 
Sbjct: 337 NILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEE 396

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
                +  TY+ L++  A     D A ++++ M  +GL P + TY+ L+        +  
Sbjct: 397 RCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKE 456

Query: 499 AAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A+K    +  M    + V  + ++  Y K+GS   ALR L  M  SG+  N         
Sbjct: 457 ASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMG 516

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590
              ++  ++ A+ LL   + S  K  + LY  V
Sbjct: 517 LLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 168/382 (43%), Gaps = 9/382 (2%)

Query: 191 SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250
           S Y P    Y  + +    S   D  L+    M+H+       L + +N ++  L +++ 
Sbjct: 86  STYTP---LYDAIVNAYVHSHSTDQALTFLHHMIHEGHA---PLSNTFNNLLCLLIRSNY 139

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
            + ++  F  VL S   ++  S+ +++T     G   + F +   +E+   S +   Y  
Sbjct: 140 FDKAWWIFN-VLKSKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTT 198

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I    K+G +  A  LF +M      P+ + ++ L++   K G      ++Y  M   G
Sbjct: 199 LIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSG 258

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             P+A  Y  LI  Y   G +D A +++ EMR  G       + ++I    +  K   A+
Sbjct: 259 IVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAV 318

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            +   + + G  P   TY+ L+      G++D+A++L+N + S+GL P L TY  L+   
Sbjct: 319 KLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGY 378

Query: 491 AKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549
           +K + +  A  ++ EM+    +   V+ + ++  + +    D A      M  SG+  + 
Sbjct: 379 SKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDV 438

Query: 550 FIVRQLFES-CMKNALYESAKP 570
           +    L    C+   + E++KP
Sbjct: 439 YTYSVLIHGXCVNGNMKEASKP 460



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 117/295 (39%), Gaps = 3/295 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
            +S  VP    Y  L          D    +F EM       G+     YN +I  L + 
Sbjct: 255 NRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVM---TYNILIGGLCRG 311

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            K   +     KV       +  +YN+L+  F + G    A  ++  ++    S    TY
Sbjct: 312 KKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTY 371

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I   +K   L  A+ L +EM+ER    S   +  L+D+  +    D + +++  M+ 
Sbjct: 372 NTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEK 431

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P    Y  LI      G +  A + +  +     +PN  ++  +I  + K G    
Sbjct: 432 SGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYR 491

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           A+ +  +M  +G +P  +++   + +     +   A  L   M ++GL+P +S Y
Sbjct: 492 ALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSLY 546



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEM 253
           P    Y +L +   +    D  + LF+++      +G+S     YN +I   +K + L  
Sbjct: 331 PNIVTYNILINGFCDVGKMDTAVRLFNQL----KSSGLSPTLVTYNTLIAGYSKVENLAG 386

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +    K++ +        +Y +L+  F       KA E++  MEK     D  TY ++I 
Sbjct: 387 ALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIH 446

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
               +G +  A K F+ + E + +P+  I+ +++    K G    ++++  EM   G  P
Sbjct: 447 GXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVP 506

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           +   + S +    +  K   A  L  +M  +G +P+  L+ M+
Sbjct: 507 NVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 147/329 (44%), Gaps = 4/329 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L + D MV +     +  F+ YN V+  L K  +LE +     +++D  C  D  ++N L
Sbjct: 306 LKVMDVMVQEGHDPDV--FT-YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 362

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +          +A ++   +     S D  T+ ++I +L K G    A++LF+EMK    
Sbjct: 363 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 422

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + +L+D++   G+L  ++ +  +M+  G   S   Y ++I+   K  +++ A  
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++D+M + G   N   F  +I+   K  K+D A  +   M   G  P   TY+ +L  + 
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYC 542

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G +  A  +  +MT+ G    + TY  L+  L K     VA K+L  M+  G      
Sbjct: 543 KQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPK 602

Query: 517 ASD-VLMVYIKDGSVDHALRWLRFMGSSG 544
           A + VL    +  ++  AL   R M   G
Sbjct: 603 AYNPVLQSLFRRNNIRDALSLFREMAEVG 631



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 154/349 (44%), Gaps = 14/349 (4%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H+  ALKV++              Q  + P    Y ++ + L ++   +    + ++MV 
Sbjct: 301 HVGHALKVMD-----------VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVD 349

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
                 I+ F   N +I  L   ++LE +    ++V       D  ++N+L+      G 
Sbjct: 350 RGCLPDITTF---NTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGD 406

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           P+ A  ++E M+   C+ D  TY  +I +L   G+L  A+ L ++M+      S   + +
Sbjct: 407 PHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNT 466

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           ++D + K  R++ + +V+ +M   G   +A  + +LI+   K  K+D A  L ++M   G
Sbjct: 467 IIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEG 526

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +PN   +  I+  + K G +  A  I   M   GF     TY  L+     +G+   A+
Sbjct: 527 LQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVAL 586

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           K+   M   G+RP    Y  +L  L +R  +  A  +  EM  +G   D
Sbjct: 587 KVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPD 635



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 159/394 (40%), Gaps = 36/394 (9%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I    K  ++E +    ++ +    + D  +YN  +           A ++ + M +
Sbjct: 255 NVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQ 314

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY +++  L K+G+L+ A  +  +M +R   P    F +L+ ++    RL+ 
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           ++ +  ++   G  P    +  LI +  K G    ALRL++EM+ +G  P+   +  +I+
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTY------------------------------ 448
           +    GKL  A+ +  DME  G   +  TY                              
Sbjct: 435 NLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494

Query: 449 -----SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503
                + L++      ++D A +L N M S GL+P   TY ++LT   K+  +  AA IL
Sbjct: 495 NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554

Query: 504 LEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562
             M   G+ VDV     L+  + K G    AL+ LR M   G+R        + +S  + 
Sbjct: 555 ETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRR 614

Query: 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
                A  L     E     D + Y  V   L R
Sbjct: 615 NNIRDALSLFREMAEVGEPPDALTYKIVFRGLCR 648



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 127/282 (45%), Gaps = 1/282 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I  L K     ++   F+++ +S C  D  +YN L+    + G   KA ++ + M
Sbjct: 393 TFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 452

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E   C     TY  +I  L K  R++ A ++F +M  +    +   F +L+D + K  ++
Sbjct: 453 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 512

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++  +M   G +P+   Y S++  Y K G +  A  + + M   GF  +   +  +
Sbjct: 513 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 572

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+G+  +A+ +   M   G  PTP  Y+ +L+       +  A+ L+  M   G 
Sbjct: 573 INGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGE 632

Query: 477 RPGLSTYTALLTLLAK-RKLVDVAAKILLEMKTMGYSVDVSA 517
            P   TY  +   L +    +  A   +LEM   G+  + S+
Sbjct: 633 PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSS 674



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 170/415 (40%), Gaps = 4/415 (0%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L +VL E      + S++ EM     K  +  F   N +++ L +A ++  +    +
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTF---NTLMKALCRAHQVRTAVLMLE 205

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++       D  ++  LM  F+ +G    A  +   M +  CS    T  ++I    K G
Sbjct: 206 EMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLG 265

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R++ A+   Q+     F P    + + V+ + +   +  ++KV   M   GH P    Y 
Sbjct: 266 RVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 325

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            ++    K G+L+ A  + ++M   G  P+   F  +I +     +L+ A+ +   +   
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   T++ L+      G    A++L+  M ++G  P   TY  L+  L     +  A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 500 AKILLEMKTMGY-SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +L +M++ G     ++ + ++    K   ++ A      M   GI  N      L + 
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
             K+   + A  L+   +    + + + Y S+L H  +  D +    ++  ++A 
Sbjct: 506 LCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTAN 560



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/436 (20%), Positives = 177/436 (40%), Gaps = 10/436 (2%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
            +  AL+   D D +L +   A  +  + PG E Y  +   L      D M  L  EM  
Sbjct: 43  QLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRR 102

Query: 226 DSSKNGISLFSAYNRVIQYLAKA---DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
           +  +  + L   ++ +  Y  +    D +++     + +     + DT  YN L+ + + 
Sbjct: 103 EGHQ--VKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFG--IQADTVVYNHLLNVLV- 157

Query: 283 KGLPYKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341
           +G   K  E +Y  M       D  T+  ++ +L ++ ++  A+ + +EM  R   P   
Sbjct: 158 EGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDET 217

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
            F +L+    + G ++ +++V   M   G   +      LI  Y K G+++ AL    + 
Sbjct: 218 TFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQE 277

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              GF P+   +   +    ++  +  A+ +   M + G  P   TY+ ++     +GQ+
Sbjct: 278 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 337

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           + A  + N M   G  P ++T+  L+  L     ++ A  +  ++   G S DV   ++L
Sbjct: 338 EEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 397

Query: 522 M-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580
           +    K G    ALR    M +SG   +      L ++         A  LL+    +  
Sbjct: 398 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 581 KVDLVLYTSVLAHLVR 596
               + Y +++  L +
Sbjct: 458 PRSTITYNTIIDGLCK 473



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 6/230 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D L +    +    +FD+M +   S+N I+    +N +I  L K  K++ ++   
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT----FNTLIDGLCKDKKIDDAFELI 519

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            +++    + +  +YN ++T +  +G   KA +I E+M      +D  TY  +I  L K+
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 579

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR   A+K+ + M+ +  RP+   +  ++ S+ +   +  ++ ++ EM   G  P A  Y
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTY 639

Query: 379 VSLIESYAKAGK-LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             +     + G  +  A     EM   GF P F  F M+ E     G  D
Sbjct: 640 KIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDD 689



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 123/330 (37%), Gaps = 40/330 (12%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P   +Y  +I      G LD    L  EMR  G +   G+    ++S+      D A+ +
Sbjct: 72  PGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDL 131

Query: 433 FTDMERA--GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
             +  +   G       Y+ LL +     ++     +Y+ M + G++P + T+  L+  L
Sbjct: 132 ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKAL 191

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNN 549
            +   V  A  +L EM + G + D +    LM  ++++GS++ ALR    M   G     
Sbjct: 192 CRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 251

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609
             V  L     K    E A   ++  +    + D + Y + +  L  CQ++         
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL--CQND--------- 300

Query: 610 LSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLM 669
                H  HA               V+  + +  H  D         +  N+++N L   
Sbjct: 301 -----HVGHAL-------------KVMDVMVQEGHDPDV--------FTYNIVVNCLCKN 334

Query: 670 GQINRARCVWKVAYENKLFPKAIVFDQHIA 699
           GQ+  A+ +     +    P    F+  IA
Sbjct: 335 GQLEEAKGILNQMVDRGCLPDITTFNTLIA 364


>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 484

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 195/479 (40%), Gaps = 43/479 (8%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHGSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSL----------FDE-----MVHDSSKNGI-----SLFS------------AYNRVIQY 244
             +          +DE     M+    K GI      LF             +Y+ + + 
Sbjct: 65  RCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
           + +  +  M+   F K+L    +     +NV++  F   G    A   +E M+  E S D
Sbjct: 125 ILRRGRFMMAKRYFNKMLSEGIEPTRHXFNVMIWGFFLSGKVETANRFFEDMKSREISPD 184

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  MI    +  ++D A K F EMK RN  P+   + +L+       ++D ++++  
Sbjct: 185 VITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVE 244

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP-NFGLFTMIIESHAKS 423
           EM+G G +P+A  Y +L+     A K+  A  +  EM      P +  +F  +I S  K+
Sbjct: 245 EMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYMAPTDNSIFXRLISSQCKT 304

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LRPGL- 480
           G LD A  +   M R         Y  L+E    +GQ D A+KL + +      LRP   
Sbjct: 305 GNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDKAVKLLDKLIEKDIILRPQST 364

Query: 481 -----STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALR 535
                S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D A  
Sbjct: 365 LHMEPSAYNPMIEYLCNNGQTAKAEALVRQLLKLGVQDPTALNTLIRGHSQEGSPDSAFE 424

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
            L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV   L
Sbjct: 425 LLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVXESL 483


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 168/362 (46%), Gaps = 8/362 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N +++ + ++ KL  +   F ++L         ++N LM+          A  +   M 
Sbjct: 247 FNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMA 306

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K   + D  TY   +  L K+GR+  A+++F+EM+ER   P+  +F +L+D+  K G + 
Sbjct: 307 KAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVA 366

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
             ++++ EM   G +     Y +L     +   L  A  + +EMR  G +P+   +T +I
Sbjct: 367 AGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLI 426

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   K G+LD+AM +  +M   G      TY+ L+   + SG+   + ++   M  AGL 
Sbjct: 427 DGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLE 486

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRW 536
           P  +TYT ++    K   V    K+L EM+  G    V   +V+M  +   G + +A   
Sbjct: 487 PDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADML 546

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV--DLVLYTSVLAHL 594
           L  M + G+  ++     L +   K+     A+ L     +SA  +  D  LYTS++   
Sbjct: 547 LNAMLNIGVCPDDITYNILLDGHCKHGKVRDAEEL-----KSAKGMVSDFGLYTSLINEF 601

Query: 595 VR 596
           V+
Sbjct: 602 VK 603



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 140/305 (45%), Gaps = 1/305 (0%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A+  Y  +       +   + +++  + +SG+L +A  +F EM  R   P+   F +L+
Sbjct: 227 EAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLM 286

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
             M KA  L+++  +   M   G  P    Y + ++   KAG++  A+ +++EMR  G  
Sbjct: 287 SGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVN 346

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           PN  +FT +I++H K G +   + +  +M   G       Y+ L         + +A  +
Sbjct: 347 PNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDI 406

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIK 526
              M + GL+P   TYT L+    K   +D+A ++  EM   G ++D V+ + ++    K
Sbjct: 407 VEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSK 466

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
            G    + R L  M  +G+  +N     + ++  KN+  ++   LL+       K  +V 
Sbjct: 467 SGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVT 526

Query: 587 YTSVL 591
           Y  V+
Sbjct: 527 YNVVM 531



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 3/238 (1%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R+    P    +  L D   +  +    L L  EM     K  +    AYN +   L + 
Sbjct: 341 RERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLV---AYNALANGLCRV 397

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
             L+ +    +++ ++  K D  +Y  L+  F  +G    A E+ + M     +LD  TY
Sbjct: 398 RDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTY 457

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I  L+KSGR   + ++  EM E    P    +  ++D+  K   + T  K+  EMQ 
Sbjct: 458 TTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQN 517

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
            G +P    Y  ++  +   G++  A  L + M   G  P+   + ++++ H K GK+
Sbjct: 518 KGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKV 575



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 119/269 (44%), Gaps = 6/269 (2%)

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
           D M +   +  +   Y+++   G  P A  +  L+    ++GKL +A  ++DEM   G  
Sbjct: 217 DLMNRLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVP 276

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P    F  ++    K+  L+ A ++   M +AG  P   TY   ++    +G++  A+++
Sbjct: 277 PTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEM 336

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL---MVY 524
           +  M   G+ P    +T L+    K   V    ++  EM T G   D+ A + L   +  
Sbjct: 337 FEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCR 396

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
           ++D  +  A   +  M ++G++ +      L +   K    + A  + +   +    +D 
Sbjct: 397 VRD--LKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDE 454

Query: 585 VLYTSVLAHLVRC-QDEQNERHLMAILSA 612
           V YT++++ L +  +   +ER L  ++ A
Sbjct: 455 VTYTTLISGLSKSGRSVDSERILCEMMEA 483


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 161/361 (44%), Gaps = 15/361 (4%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +L LF   ++    VP    Y  +     +    D    L +E    SS        A
Sbjct: 87  DKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSD-----VIA 141

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLD----SDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
              V +   KA +++ +Y   + +LD       K D  ++NV++  F   G   +A+E+ 
Sbjct: 142 ITSVARGFCKAQRVDEAY---QLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEML 198

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF--RPSFNIFASLVDSMG 351
           E++    C  +  TY  +I    KSG L  A++LF+ +  R+    P+   F +L+  + 
Sbjct: 199 ETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLC 258

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           KA RL+ + ++  +M+    R     Y +L++   K G+     R+++EM   G  P+  
Sbjct: 259 KADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVV 318

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +T ++ +H K+G L  A  +   M   G  P  +TY+ LLE    +G+V +A + +  +
Sbjct: 319 TYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKI 378

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSV 530
                 P    Y+AL+    K  LVD A K  +EM     + D +   +L+ +  K G  
Sbjct: 379 LRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRT 438

Query: 531 D 531
           D
Sbjct: 439 D 439



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 174/397 (43%), Gaps = 25/397 (6%)

Query: 107 KGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH 166
           +GI+        ++++ G  +  L   A+    E+   +   PE  T    ++   KM  
Sbjct: 62  RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDR 121

Query: 167 ITQALKVINDSDTS----LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDE 222
           + QA +++ +S       +++   A+        DE Y +L D++ +             
Sbjct: 122 LDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKK------------ 169

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282
               S+K  I    A+N +I    KA ++  +Y   + ++   C  +  +Y  L+  F  
Sbjct: 170 ----SAKPDIV---AWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCK 222

Query: 283 KGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
            G   +A ++++ +   +   + +  T+  +I  L K+ RL+ A +L ++MK R+ R   
Sbjct: 223 SGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADT 282

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             + +L+D + K GR     +V+ EM   G  PS   Y +L+ ++ KAG L  A ++   
Sbjct: 283 FTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRS 342

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M   G  P+   +T+++E   ++GK+  A   F  + R    P    YS L+     +  
Sbjct: 343 MVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAAL 402

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
           VD A+K Y  M    L P  +T   L+ +L KR   D
Sbjct: 403 VDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 158/363 (43%), Gaps = 12/363 (3%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           ++ +I  L KA +L  +  C+ ++L+  C  + +  N+L+      G   +A  I+  + 
Sbjct: 6   FSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIFRGI- 64

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR--PSFNIFASLVDSMGKAGR 355
             +CS    T  ++I    +   LD A++LF EM E+NF   P    + +++    K  R
Sbjct: 65  --QCSPSVITLNILINGFCELQLLDKALELFHEM-EKNFALVPEATTYTAIIKCYCKMDR 121

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR-LWDEMRIAGFRPNFGLFT 414
           LD + ++  E   C     A    S+   + KA ++D A + L D +     +P+   + 
Sbjct: 122 LDQARQLLEESSCCSSDVIA--ITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWN 179

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           +II    K+G++  A  +   +   G +P   TY+ L++    SG +  A++L+  ++S 
Sbjct: 180 VIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSR 239

Query: 475 G--LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
                P + T+ AL++ L K   ++ A +++ +MK      D      LM    K G   
Sbjct: 240 DHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTS 299

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
              R    M   G   +      L  +  K    + A+ ++ + V      D+  YT +L
Sbjct: 300 EVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLL 359

Query: 592 AHL 594
             L
Sbjct: 360 EGL 362



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 14/252 (5%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   +  LI    KAG+L  A+  +++M      PN     +++ S  ++G +D AM+I
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GLRPGLSTYTALLTLLA 491
           F  ++ +   P+  T + L+        +D A++L++ M     L P  +TYTA++    
Sbjct: 61  FRGIQCS---PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM-----GSSGIR 546
           K   +D A ++L E       V ++ + V   + K   VD A + L  M         I 
Sbjct: 118 KMDRLDQARQLLEESSCCSSDV-IAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIV 176

Query: 547 TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
             N I+    ++      YE    +LET V      + V YT+++    +  +      L
Sbjct: 177 AWNVIIHGFCKAGRVREAYE----MLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 607 MAILSATKHKAH 618
             +LS+  H A 
Sbjct: 233 FKVLSSRDHHAE 244


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 159/350 (45%), Gaps = 12/350 (3%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGM---LSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
           QS+ V G  C +++  +LN     D +   + LFDE +   S N    F+   R +  + 
Sbjct: 163 QSFEVEG--CCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVG 220

Query: 247 KADK-LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-CSLD 304
           KA+K LE+       +    C+ D  +YN L+  F       KA E+++ ++ G  CS D
Sbjct: 221 KAEKALEL----LGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPD 276

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  MI    K+G++  A  L  +M      P+   F  LVD   KAG + T+ ++  
Sbjct: 277 VVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRG 336

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           +M   G  P    + SLI+ Y + G++    RLW+EM   G  PN   ++++I +     
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNEN 396

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           +L  A  +   +     +P P  Y+ +++    +G+V+ A  +   M     +P   T+T
Sbjct: 397 RLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFT 456

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHA 533
            L+     +  +  A  I  +M  +G S D ++ S +L   +K G    A
Sbjct: 457 ILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 39/303 (12%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM-- 364
           TY L+  SL K+G  D A ++F+ MK     P+  +   LV S  + G+L  +  + +  
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 365 -EMQGCGHRPSAPM------------------------------YVSLIESYAKAGKLDT 393
            E++GC    ++ +                              +  LI      GK + 
Sbjct: 165 FEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEK 224

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS--TYSCL 451
           AL L   M   G  P+   +  +I+   KS +L+ A  +F D+ ++G + +P   TY+ +
Sbjct: 225 ALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDV-KSGSVCSPDVVTYTSM 283

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +  +  +G++  A  L + M   G+ P   T+  L+   AK   +  A +I  +M + G 
Sbjct: 284 ISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGC 343

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
             D V+ + ++  Y + G V    R    M + G+  N F    L  + C +N L + A+
Sbjct: 344 FPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLK-AR 402

Query: 570 PLL 572
            LL
Sbjct: 403 ELL 405



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 10/267 (3%)

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD-- 392
           N R SF  +  L  S+ KAG  D + +++  M+  G  P+  +   L+ S+A+ GKL   
Sbjct: 98  NIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFA 157

Query: 393 TALRLWD-EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           TAL L   E+       N  L T++     K  +++ AM +F +  R        T++ L
Sbjct: 158 TALLLQSFEVEGCCMVVNSLLNTLV-----KLDRVEDAMKLFDEHLRFQSCNDTKTFNIL 212

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +      G+ + A++L   M+  G  P + TY  L+    K   ++ A+++  ++K+   
Sbjct: 213 IRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSV 272

Query: 512 -SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            S D V+ + ++  Y K G +  A   L  M   GI   N     L +   K     +A+
Sbjct: 273 CSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAE 332

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVR 596
            +    +      D+V +TS++    R
Sbjct: 333 EIRGKMISFGCFPDVVTFTSLIDGYCR 359



 Score = 42.7 bits (99), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 9/216 (4%)

Query: 384 SYAKAGKLDT----ALRLWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
           S+    KLD       R W+  R     R +F  + ++  S  K+G  D+A  +F  M+ 
Sbjct: 72  SFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKS 131

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P       L+   A  G++  A  L   + S  +        +LL  L K   V+ 
Sbjct: 132 DGVSPNNRLLGFLVSSFAEKGKLHFATALL--LQSFEVEGCCMVVNSLLNTLVKLDRVED 189

Query: 499 AAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A K+  E        D    ++L+  +   G  + AL  L  M   G   +      L +
Sbjct: 190 AMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQ 249

Query: 558 S-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
             C  N L ++++   +    S    D+V YTS+++
Sbjct: 250 GFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMIS 285


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 135/279 (48%), Gaps = 1/279 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +YN V+    +   ++++   F  +L+   K +  +Y++L+           A E+   M
Sbjct: 480 SYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHM 539

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGR 355
                 ++G  Y+ +I  L K G+   A +L   M +E+    S   + S++D   K G 
Sbjct: 540 TSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGE 599

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +D+++  Y EM G G  P+   Y SL+    K  ++D AL + DEM+  G + +   +  
Sbjct: 600 MDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGA 659

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+   K   ++ A ++F+++   G  P+   Y+ L+    + G + +A+ LY  M   G
Sbjct: 660 LIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDG 719

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           LR  L TYT L+  L K   + +A+++  EM+ +G   D
Sbjct: 720 LRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPD 758



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 151/331 (45%), Gaps = 8/331 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253
           P +  Y +L D    + D    L + + M   + + NG+     Y  +I  L K  +   
Sbjct: 511 PNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGV----VYQTIINGLCKVGQTSK 566

Query: 254 SYCCFKKVLDSD--CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           +      +++    C +   SYN ++  F  +G    A   YE M     S +  TY  +
Sbjct: 567 ARELLANMIEEKRLC-VSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSL 625

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           +  L K+ R+D A+++  EMK +  +     + +L+D   K   ++++  ++ E+   G 
Sbjct: 626 MNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGL 685

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            PS P+Y SLI  +   G +  AL L+ +M   G R + G +T +I+   K G L +A  
Sbjct: 686 NPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASE 745

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           ++T+M+  G +P    Y+ ++   +  GQ    +K++  M    + P +  Y A++    
Sbjct: 746 LYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHY 805

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
           +   +D A ++  EM   G   D +  D+L+
Sbjct: 806 REGNLDEAFRLHDEMLDKGILPDGATFDILV 836



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 193/409 (47%), Gaps = 8/409 (1%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           L +  ++ R  D  + + ++M+     + I  F   NR +  L + + L  +   + +++
Sbjct: 169 LLNAYSKDRQTDHAVDIVNQMLE---LDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMV 225

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ESMEKGECSLDGSTYELMIPSLAKSGRL 321
                 D  +  +LM   L +  P +A E+   ++E+G    D   Y L + +  K+  L
Sbjct: 226 AIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERG-AEPDSLLYSLAVQACCKTLDL 284

Query: 322 DAAIKLFQEMKERNF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
             A  L +EMKE+    PS   + S++ +  K G +D ++++  EM   G   +     S
Sbjct: 285 AMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATS 344

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI  + K   L +AL L+D+M   G  PN   F+++IE   K+G+++ A+  +  ME  G
Sbjct: 345 LITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLG 404

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             P+      +++      + + A+KL++     GL   +     +L+ L K+   D A 
Sbjct: 405 LTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGL-ANVFVCNTILSWLCKQGKTDEAT 463

Query: 501 KILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           ++L +M++ G   +V S ++V++ + +  ++D A      +   G++ NN+    L + C
Sbjct: 464 ELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGC 523

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
            +N   ++A  ++     S  +V+ V+Y +++  L +       R L+A
Sbjct: 524 FRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLA 572



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 108/489 (22%), Positives = 201/489 (41%), Gaps = 57/489 (11%)

Query: 110 RSVEPGFD-DHVMVGGIKKPFLNASAVAKIVEVVNRW-KWGPELETQLDKLQFVPKMVHI 167
           R V  G D D+V    + +  L     A+ +EV++R  + G E ++ L  L         
Sbjct: 223 RMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLA-------- 274

Query: 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227
            QA     D   + SL R  K +   VP  E Y  +     +  + D  + L DEM+ D 
Sbjct: 275 VQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSD- 333

Query: 228 SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
              GIS                   M+      ++   CK              N  L  
Sbjct: 334 ---GIS-------------------MNVVAATSLITGHCK--------------NNDL-V 356

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
            A  +++ MEK   S +  T+ ++I    K+G ++ A++ +++M+     PS     +++
Sbjct: 357 SALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTII 416

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV--SLIESYAKAGKLDTALRLWDEMRIAG 405
               K  + + ++K++ E    G    A ++V  +++    K GK D A  L  +M   G
Sbjct: 417 QGWLKGQKHEEALKLFDESFETGL---ANVFVCNTILSWLCKQGKTDEATELLSKMESRG 473

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             PN   +  ++  H +   +D+A  +F+++   G  P   TYS L++    +    +A+
Sbjct: 474 IGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNAL 533

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL---LEMKTMGYSVDVSASDVLM 522
           ++ N MTS+ +      Y  ++  L K      A ++L   +E K +  S  +S + ++ 
Sbjct: 534 EVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSC-MSYNSIID 592

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582
            + K+G +D A+     M  +GI  N      L     KN   + A  + +       K+
Sbjct: 593 GFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKL 652

Query: 583 DLVLYTSVL 591
           D+  Y +++
Sbjct: 653 DIPAYGALI 661


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 144/298 (48%), Gaps = 1/298 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++  L +A KL+ ++   K++L   C +D  SYN L++    K    +AF   + M K
Sbjct: 509 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK 568

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY ++I  L    +++ AI+ + + K     P    ++ ++D   KA R + 
Sbjct: 569 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 628

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
             + + EM     +P+  +Y  LI +Y ++G+L  AL L ++M+  G  PN   +T +I+
Sbjct: 629 GQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIK 688

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
             +   +++ A  +F +M   G  P    Y+ L++ +   GQ+     L   M S  + P
Sbjct: 689 GMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP 748

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
              TYT ++   A+   V  A+++L EM+  G   D ++  + +  Y+K G V  A +
Sbjct: 749 NKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 806



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 165/365 (45%), Gaps = 19/365 (5%)

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N+L+T  +      K  E ++ + KG  S D   +   I +  K G+++ A+KLF +M+E
Sbjct: 230 NILLTSLVRANEFQKCCEAFDVVCKG-VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEE 288

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P+   F +++D +G  GR D +     +M   G  P+   Y  L++   +A ++  
Sbjct: 289 AGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGD 348

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  +  EM   GF PN  ++  +I+S  ++G L+ A+ I   M   G   T STY+ L++
Sbjct: 349 AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 408

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +  +GQ D+A +L   M S G      ++T+++ LL    + D A + + EM     S 
Sbjct: 409 GYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSP 468

Query: 514 DVSASDVLMVYI-KDGSVDHALR-WLRFMGSSGI---RTNNFIVRQLFESCMKNALYESA 568
                  L+  + K G    AL  W +F+    +   RT+N ++  L E+   +  +   
Sbjct: 469 GGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQ 528

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI-------LSATKHKAHAFL 621
           K +L         +D V Y ++++    C  ++ +   M +       L    +     +
Sbjct: 529 KEIL----GRGCVMDRVSYNTLISGC--CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 582

Query: 622 CGLFT 626
           CGLF 
Sbjct: 583 CGLFN 587



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 158/352 (44%), Gaps = 4/352 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD  L    EM+  +   G  L +    +I  L K  K   +   + + L+    +DT++
Sbjct: 451 FDSALRFVGEMLLRNMSPGGGLLTT---LISGLCKHGKHSKALELWFQFLNKGFVVDTRT 507

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
            N L+      G   +AF I + +    C +D  +Y  +I       +LD A     EM 
Sbjct: 508 SNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMV 567

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +R  +P    ++ L+  +    +++ +++ + + +  G  P    Y  +I+   KA + +
Sbjct: 568 KRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTE 627

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
                +DEM     +PN  ++  +I ++ +SG+L +A+ +  DM+  G  P  +TY+ L+
Sbjct: 628 EGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 687

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-Y 511
           +  +   +V+ A  L+  M   GL P +  YTAL+    K   +     +L EM +   +
Sbjct: 688 KGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH 747

Query: 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
              ++ + ++  Y +DG+V  A R L  M   GI  ++   ++     +K  
Sbjct: 748 PNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQG 799



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 156/360 (43%), Gaps = 8/360 (2%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCK---IDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           N ++  L +A+  E   CC  +  D  CK    D   +   +  F   G   +A +++  
Sbjct: 230 NILLTSLVRAN--EFQKCC--EAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSK 285

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+   + +  T+  +I  L   GR D A    ++M ER   P+   ++ LV  + +A R
Sbjct: 286 MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKR 345

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  +  V  EM   G  P+  +Y +LI+S+ +AG L+ A+ + D M   G       +  
Sbjct: 346 IGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNT 405

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+ + K+G+ D A  +  +M   GF     +++ ++ +  S    DSA++    M    
Sbjct: 406 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 465

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHAL 534
           + PG    T L++ L K      A ++  +    G+ VD   S+ L+  + + G +D A 
Sbjct: 466 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 525

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           R  + +   G   +      L   C      + A   L+  V+   K D   Y+ ++  L
Sbjct: 526 RIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 585



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 146/356 (41%), Gaps = 1/356 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +++ L +A ++  +Y   K++       +   YN L+  F+  G   KA EI + M
Sbjct: 332 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 391

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                SL  STY  +I    K+G+ D A +L +EM    F  +   F S++  +      
Sbjct: 392 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMF 451

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D++++   EM      P   +  +LI    K GK   AL LW +    GF  +      +
Sbjct: 452 DSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNAL 511

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    ++GKLD A  I  ++   G +    +Y+ L+       ++D A    + M   GL
Sbjct: 512 LHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGL 571

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P   TY+ L+  L     V+ A +   + K  G   DV    V++    K    +    
Sbjct: 572 KPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQE 631

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +   M S  ++ N  +   L  +  ++     A  L E         +   YTS++
Sbjct: 632 FFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 687



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 137/314 (43%), Gaps = 5/314 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCF 258
           Y  L D   E+   +  + + D MV      G+SL S+ YN +I+   K  + + +    
Sbjct: 368 YNNLIDSFIEAGSLNKAIEIKDLMV----SKGLSLTSSTYNTLIKGYCKNGQADNAERLL 423

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           K++L     ++  S+  ++ L  +  +   A      M     S  G     +I  L K 
Sbjct: 424 KEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKH 483

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G+   A++L+ +   + F        +L+  + +AG+LD + ++  E+ G G       Y
Sbjct: 484 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSY 543

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +LI       KLD A    DEM   G +P+   ++++I       K++ A+  + D +R
Sbjct: 544 NTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR 603

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G LP   TYS +++    + + +   + ++ M S  ++P    Y  L+    +   + +
Sbjct: 604 NGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSM 663

Query: 499 AAKILLEMKTMGYS 512
           A ++  +MK  G S
Sbjct: 664 ALELREDMKHKGIS 677



 Score = 43.5 bits (101), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 83/216 (38%), Gaps = 36/216 (16%)

Query: 226 DSSKNG-ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
           D  +NG +     Y+ +I    KA++ E     F +++  + + +T  YN L+  +   G
Sbjct: 600 DCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSG 659

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK------------ 332
               A E+ E M+    S + +TY  +I  ++   R++ A  LF+EM+            
Sbjct: 660 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 719

Query: 333 -----------------------ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
                                   +N  P+   +  ++    + G +  + ++  EM+  
Sbjct: 720 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 779

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           G  P +  Y   I  Y K G +  A +  DE   A 
Sbjct: 780 GIVPDSITYKEFIYGYLKQGGVLEAFKGSDEENYAA 815


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 185/417 (44%), Gaps = 46/417 (11%)

Query: 154 QLDKLQFVPKMVHITQALKVI---NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNES 210
            +D L FVP +      L ++   N  +T+L LF     +    P    Y ++ D L  +
Sbjct: 109 DMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRD-PDVVSYTIIIDALCNA 167

Query: 211 RDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269
           + FD    ++  ++      G+S  + A   ++  L    +++++Y     V+    K++
Sbjct: 168 KRFDEAAKVWRRLI----DKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVN 223

Query: 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329
           +  YN L+  F   G   KA +I   M +  C  D  TY +++    + G +D A++L +
Sbjct: 224 SLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVE 283

Query: 330 EMKERNFRP---SFNIF------ASLVD--------------------------SMGKAG 354
            M+     P   S+N        A++VD                          +  KA 
Sbjct: 284 TMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKAR 343

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R     +++ EM G G RP    +  LI+++ + G      +L DEM      P+   +T
Sbjct: 344 RTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYT 403

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +++   K+GK+D+A S+F DM   G  P   +Y+ LL     + +V  AM L++ M S 
Sbjct: 404 AVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSK 463

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK--DGS 529
           GL P   TY  ++  L + K + +A ++  +M   G++++   S+ L+  I+  DG+
Sbjct: 464 GLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNRHLSETLVNAIQSSDGT 520



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 1/283 (0%)

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L +  RL+ A++LF  M  +   P    +  ++D++  A R D + KV+  +   G  P 
Sbjct: 129 LCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPD 188

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
               V+L+      G++D A  L   +   G + N  ++  +I+   + G++D AM I  
Sbjct: 189 YKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKA 248

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M R G +P   TY+ LL      G VD A++L  +M  +G+ P L +Y  LL    K  
Sbjct: 249 FMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKAN 308

Query: 495 LVDVAAKILLE-MKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
           +VD A  +++E M+T G    VS + V+  + K             M   GIR +     
Sbjct: 309 MVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFN 368

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            L ++ ++       K LL+   +     D + YT+V+ HL +
Sbjct: 369 ILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCK 411



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 155/340 (45%), Gaps = 3/340 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  ++N  + L   +     A E++ SM       D  +Y ++I +L  + R D A K++
Sbjct: 118 DIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVW 177

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           + + ++   P +    +LV  +   GR+D + ++ + +   G + ++ +Y +LI+ + + 
Sbjct: 178 RRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRM 237

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G++D A+++   M   G  P+   + +++    + G +D A+ +   MER+G  P   +Y
Sbjct: 238 GRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSY 297

Query: 449 SCLLEMHASSGQVDSA-MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           + LL+    +  VD A + +   M + G+   +S Y  ++T   K +      ++  EM 
Sbjct: 298 NELLKGFCKANMVDRAHLMMVERMQTKGMCDVVS-YNTVITAFCKARRTRKGYELFEEMC 356

Query: 508 TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G   D+   ++L+  ++++GS     + L  M    +  +      + +   KN   +
Sbjct: 357 GKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVD 416

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606
            A  +    VE+    D++ Y ++L    +     +  HL
Sbjct: 417 VAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHL 456



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 130/309 (42%), Gaps = 8/309 (2%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
            Y   I  L K+G ++ AI LF +M E N R     +   +  + +  RL  +   Y   
Sbjct: 12  AYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRRH 71

Query: 367 ---QGCGHRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
              +G    P +   ++S + S      L     L  +M   GF P+   F   +    +
Sbjct: 72  VIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCR 131

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
             +L+ A+ +F  M   G  P   +Y+ +++   ++ + D A K++  +   GL P    
Sbjct: 132 QNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKA 191

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMG 541
             AL+  L     VD+A ++++ +   G  V+    + L+  + + G VD A++   FM 
Sbjct: 192 CVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMS 251

Query: 542 SSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
            +G   +      L   C +  + + A  L+ET   S  + DL  Y  +L     C+   
Sbjct: 252 RTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGF--CKANM 309

Query: 602 NER-HLMAI 609
            +R HLM +
Sbjct: 310 VDRAHLMMV 318


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 159/350 (45%), Gaps = 12/350 (3%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGM---LSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
           QS+ V G  C +++  +LN     D +   + LFDE +   S N    F+   R +  + 
Sbjct: 163 QSFEVEG--CCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVG 220

Query: 247 KADK-LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-CSLD 304
           KA+K LE+       +    C+ D  +YN L+  F       KA E+++ ++ G  CS D
Sbjct: 221 KAEKALEL----LGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPD 276

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  MI    K+G++  A  L  +M      P+   F  LVD   KAG + T+ ++  
Sbjct: 277 VVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRG 336

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           +M   G  P    + SLI+ Y + G++    RLW+EM   G  PN   ++++I +     
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNEN 396

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           +L  A  +   +     +P P  Y+ +++    +G+V+ A  +   M     +P   T+T
Sbjct: 397 RLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFT 456

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHA 533
            L+     +  +  A  I  +M  +G S D ++ S +L   +K G    A
Sbjct: 457 ILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 39/303 (12%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM-- 364
           TY L+  SL K+G  D A ++F+ MK     P+  +   LV S  + G+L  +  + +  
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 365 -EMQGCGHRPSAPM------------------------------YVSLIESYAKAGKLDT 393
            E++GC    ++ +                              +  LI      GK + 
Sbjct: 165 FEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEK 224

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS--TYSCL 451
           AL L   M   G  P+   +  +I+   KS +L+ A  +F D+ ++G + +P   TY+ +
Sbjct: 225 ALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDV-KSGSVCSPDVVTYTSM 283

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +  +  +G++  A  L + M   G+ P   T+  L+   AK   +  A +I  +M + G 
Sbjct: 284 ISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGC 343

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAK 569
             D V+ + ++  Y + G V    R    M + G+  N F    L  + C +N L + A+
Sbjct: 344 FPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLK-AR 402

Query: 570 PLL 572
            LL
Sbjct: 403 ELL 405



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 10/267 (3%)

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD-- 392
           N R SF  +  L  S+ KAG  D + +++  M+  G  P+  +   L+ S+A+ GKL   
Sbjct: 98  NIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFA 157

Query: 393 TALRLWD-EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           TAL L   E+       N  L T++     K  +++ AM +F +  R        T++ L
Sbjct: 158 TALLLQSFEVEGCCMVVNSLLNTLV-----KLDRVEDAMKLFDEHLRFQSCNDTKTFNIL 212

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +      G+ + A++L   M+  G  P + TY  L+    K   ++ A+++  ++K+   
Sbjct: 213 IRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSV 272

Query: 512 -SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            S D V+ + ++  Y K G +  A   L  M   GI   N     L +   K     +A+
Sbjct: 273 CSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAE 332

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVR 596
            +    +      D+V +TS++    R
Sbjct: 333 EIRGKMISFGCFPDVVTFTSLIDGYCR 359



 Score = 42.7 bits (99), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 9/216 (4%)

Query: 384 SYAKAGKLDT----ALRLWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
           S+    KLD       R W+  R     R +F  + ++  S  K+G  D+A  +F  M+ 
Sbjct: 72  SFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKS 131

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P       L+   A  G++  A  L   + S  +        +LL  L K   V+ 
Sbjct: 132 DGVSPNNRLLGFLVSSFAEKGKLHFATALL--LQSFEVEGCCMVVNSLLNTLVKLDRVED 189

Query: 499 AAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A K+  E        D    ++L+  +   G  + AL  L  M   G   +      L +
Sbjct: 190 AMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQ 249

Query: 558 S-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
             C  N L ++++   +    S    D+V YTS+++
Sbjct: 250 GFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMIS 285


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R      ++VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 74  AIECYRLTXEHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 129

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 130 ILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 189

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I    K  + D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 190 GVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLA 249

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM   G +P+   +T +I+ 
Sbjct: 250 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDG 309

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 310 CCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPD 369

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 370 ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 139/332 (41%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 54  DJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 113

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 114 EEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 173

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K D A  +F +M   G +P    +
Sbjct: 174 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXF 233

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 234 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSX 293

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A    + M     R +      L            
Sbjct: 294 KGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVD 353

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 354 AEKMLREMLSVGLKPDARTYTMIINEFCKKGD 385



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 136/311 (43%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 90  FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFD 149

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++   K  
Sbjct: 150 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKES 209

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           + D + +++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 210 KXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYN 269

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY+ L++     G +DSA +    M   
Sbjct: 270 TLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQE 329

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHA 533
             R     YTAL++ L        A K+L EM ++G   D  + + ++  + K G V   
Sbjct: 330 NXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKG 389

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 390 SKLLKEMQRDG 400



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 117/278 (42%), Gaps = 40/278 (14%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLDTA 394
           R    +F+ L+ +  ++G L  +++ Y       H+   P      ++E   K       
Sbjct: 52  RSDJYVFSGLITAYLESGFLRDAIECYRLTXE--HKFWVPFDTCRKVLEHLMKLKYFKLV 109

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              ++E+   G+  +   F +++    K G + JA S+F  + + G  P+  +Y+ L+  
Sbjct: 110 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNG 169

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +   G +D   +L ++M ++G++P + TY+ L+    K    D A ++  EM   G   +
Sbjct: 170 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPN 229

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V  + ++  + K+G VD A+                I +Q+        L +S  P   
Sbjct: 230 XVXFTTLIDGHCKNGRVDLAME---------------IYKQM--------LSQSLSP--- 263

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611
                    DL+ Y +++  L +  D +   HL+  +S
Sbjct: 264 ---------DLITYNTLIYGLCKKGDLKQAHHLIDEMS 292


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 170/373 (45%), Gaps = 34/373 (9%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK-ADKLEM 253
           P D+ Y+ +F +L E       +S +  M     +  +    + N +I+ L K +  ++ 
Sbjct: 118 PTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVV---SLNVLIKALCKNSGTIDA 174

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           ++  F+++    C  D+ +Y  L+      G  ++A E+++ M+   CS    TY  ++ 
Sbjct: 175 AFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMH 234

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L ++G +D A+ LF +MK++   P+   ++SL+D + K G    +M++   M    H+P
Sbjct: 235 GLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKP 294

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y +LI    K GKL  A+   D M++ G +P+ GL+  II       K   A +  
Sbjct: 295 NMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYL 354

Query: 434 TDMERAGFLPTPSTYSCLLEMH-------ASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
            +M      P   T+S  ++++        ++G ++ + +LY  M + G+     T+ +L
Sbjct: 355 DEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSL 414

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV-DHALRWLRFMGSSGI 545
           +    K+  +  AA+I  EM                  + DG V DH + W   +G    
Sbjct: 415 VKCFCKKGDLHKAARIFDEM------------------VLDGCVPDHGI-WSAVVGGFWD 455

Query: 546 RTNNFIVRQLFES 558
           R     VR+ FES
Sbjct: 456 RRK---VREAFES 465



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 1/312 (0%)

Query: 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
           +L   RD      +FD    + S       + +  +I  L  A++   +     ++ +  
Sbjct: 21  LLRAERDLRKAKIIFDSASAEYSNGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEK 80

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C+I  + +  +   +    +P  A  ++  M    C     +Y  +   L +  +L  A+
Sbjct: 81  CRITEEIFLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAM 140

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGK-AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
             ++ M+E   R S      L+ ++ K +G +D + +++ EM   G  P +  Y +LI  
Sbjct: 141 SFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLING 200

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
             K GK   A  L+ EM   G  P+   ++ ++    ++G +D AM +F  M++    P 
Sbjct: 201 LCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPN 260

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TYS L++    +G    AM+L   M     +P + TY+ L+  L K   +  A + L 
Sbjct: 261 VFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLD 320

Query: 505 EMKTMGYSVDVS 516
            MK  G   D  
Sbjct: 321 RMKLQGLKPDAG 332



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 117/294 (39%), Gaps = 35/294 (11%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D +T+ +MI  L  +     A ++   MKE   R +  IF S+    G+      +++V+
Sbjct: 49  DHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAIRVF 108

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +M   G +P+   Y+S+     +  +L  A+  +  MR  G R +     ++I++  K+
Sbjct: 109 HKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKN 168

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
                                             SG +D+A +++  M   G  P   TY
Sbjct: 169 ----------------------------------SGTIDAAFEIFREMPKRGCDPDSYTY 194

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGS 542
             L+  L K      A ++  EM T G S  V     LM  + + G+VD A+     M  
Sbjct: 195 GTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKK 254

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             I  N F    L +   KN     A  LLE  V    K ++V Y++++  L +
Sbjct: 255 KAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCK 308


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 129/274 (47%), Gaps = 3/274 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L LFDEM   + K  I     Y  +I  + KA ++E +     ++      ++   +N L
Sbjct: 354 LVLFDEM---TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTL 410

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  +   G+  +A  +   MEK     D   Y  +   L K  R D A  L   M ER  
Sbjct: 411 IDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGV 470

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   F +L+D   K G    + +V+ EM+  G+ P+   Y  LI+ Y+K G +  A +
Sbjct: 471 SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHK 530

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L DE+   G  P+    T +I      GK+D+A+ +F +M + G +P   TY+ ++   +
Sbjct: 531 LKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLS 590

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
             G+ + A KLY+ M   GL P  + Y++L+  L
Sbjct: 591 KDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 624



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 191/451 (42%), Gaps = 40/451 (8%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L  F   +++ +++    C V L   L      D  L  F  MV+   +  ++++S   
Sbjct: 178 ALEAFEHMEKKGFHIDERSCLVYLL-ALRRGGQVDSCLRFFRRMVNLDVE--VTVYS-LT 233

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            V+  L K   +EM      +V     K +  +YN  +  +  +       EI   MEK 
Sbjct: 234 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 293

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             + +  TY L+I   +  G+++ A +LF+EM+E+       ++ S++    ++G +  +
Sbjct: 294 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 353

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           + ++ EM   G  PSA  Y +LI    KAG+++ A  L +EM+  G   N  +F  +I+ 
Sbjct: 354 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 413

Query: 420 HAKSGKLDIAMSIFTDMERAGF-----------------------------------LPT 444
           + +SG +D A+ +   ME+ G                                     P 
Sbjct: 414 YCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPN 473

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             +++ L++++   G    A +++  M   G  P + TY  L+   +KR  +  A K+  
Sbjct: 474 TMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKD 533

Query: 505 EMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
           E++  G   DV + + ++     DG VD AL+    M   G+  N      +     K+ 
Sbjct: 534 ELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDG 593

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             E A  L +   E+    D  +Y+S++  L
Sbjct: 594 RSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 624



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 192/438 (43%), Gaps = 24/438 (5%)

Query: 163 KMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDE 222
           + VH+  +  ++  +++ L  F +  R+++Y P    Y+ L   L  SR  D +      
Sbjct: 59  QTVHLILSNHILT-AESCLDFFHFI-RKNYYKPDLRAYITLIFKLYRSRKSDKL------ 110

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC--------KIDTQSYN 274
             H S K     F+    +    A  D L +       ++D  C        K   + ++
Sbjct: 111 --HKSQK-----FAEIRHLFNCAAVDDGLRVPVTVIASLVDDACNESKCNRAKFKEKFFD 163

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           +L  ++ +  +  +A E +E MEK    +D  +  + + +L + G++D+ ++ F+ M   
Sbjct: 164 LLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNL 223

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
           +   +      ++D + K G ++   K+  E+   G + +   Y + IE Y K   L   
Sbjct: 224 DVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGV 283

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             +   M   G   N   +T++I   +  GK++ A  +F +M   G       Y+ ++  
Sbjct: 284 AEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISC 343

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +  SG V  A+ L++ MT  GL P   TY AL+  + K   ++ A  ++ EM+  G  ++
Sbjct: 344 NCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLN 403

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V  + ++  Y + G VD ALR    M   G+ ++ F    +     K    + AK LL 
Sbjct: 404 PVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLF 463

Query: 574 TYVESAAKVDLVLYTSVL 591
           + VE     + + +T+++
Sbjct: 464 SMVERGVSPNTMSFTTLI 481



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YNVL+  +  +G   +A ++ + +E      D  T   +I      G++D A+KLF EM
Sbjct: 511 TYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEM 570

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +R   P+   + +++  + K GR + + K+Y EM+  G  P   +Y SL+ S   A
Sbjct: 571 PQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSA 627


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 184/404 (45%), Gaps = 15/404 (3%)

Query: 181 LSLFRWAKRQSWYVPGDECYVMLF----DVLNESRDFDGMLSLFDEMVHDSSKNGISLFS 236
            +LFRWA +Q    PG E  + LF    DVL +SR FD    L  + +    +  +   +
Sbjct: 121 FTLFRWAMKQ----PGFESSMTLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSN 176

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS----YNVLMTLFLNKGLPYKAFEI 292
            +  +I+  A+A     +   F+     D   D  S    + +L+     +G    A E 
Sbjct: 177 TFAVLIRRYARAGMTLSAIRTFEFAFSLDSIRDRDSEWSLFKILLDSLCKEGHVRVASEY 236

Query: 293 YESMEKGECSLDGS--TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           ++     + S   S   Y +++    +S +L  A +L++ MK  N +P+   + +LV+  
Sbjct: 237 FDQQRGLDPSWVPSIRVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGY 296

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            +  R + ++++  EM+G G  P+  +Y  +I+S A+AG+   A+ + +   ++   P  
Sbjct: 297 CRMRRSEKAIELVGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTI 356

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
             +  +++   K+G L  A  +   M   GF PT +TY+      +  G+ +  M LY  
Sbjct: 357 STYNSLVKGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTK 416

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS 529
           M  +G  P   TY  L+ ++ + + +D+A ++  EM+  G  +D++ S +L+ +  K   
Sbjct: 417 MIESGHTPDRLTYHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHR 476

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           ++ A      M   GI        ++  +  K  L E A+ L +
Sbjct: 477 LEEAFAEFEDMIRRGIVPQYLTFERMNNALRKRGLTEMARKLCD 520


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 182/391 (46%), Gaps = 4/391 (1%)

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           L +S  +  ++SL  +M  +   + + + S    +I   ++  +  +S+    K+L    
Sbjct: 82  LVKSNHYSTVVSLHRQMEFNGITSDLVILSI---LINCFSQLGQNPLSFSVLAKILKMGY 138

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           + +  +   L+     KG  ++A + ++ +      L+  +Y  +I  L K G+  AA++
Sbjct: 139 EPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQ 198

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           L + +  +  +P+  ++ +++DSM K   ++ +  +Y EM   G  P    Y +LI  + 
Sbjct: 199 LLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFC 258

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
             GK+  A  L+++M      PN   F ++++   K  +L  A ++   M + G  P   
Sbjct: 259 IVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVF 318

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           TY+ L++ +    +V+ A  ++N+++  G+ P + +Y+ ++    K K VD A  +  EM
Sbjct: 319 TYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEM 378

Query: 507 KTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
                  DV   + L+  + K G + +AL+ +  M   G+  +      + ++  KN   
Sbjct: 379 HCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQV 438

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           + A  LL    +   + D+  YT+++  L +
Sbjct: 439 DKAIALLTKMKDEGIQPDICTYTTLVDGLCK 469



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 142/292 (48%), Gaps = 3/292 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           LF++M+ ++    +  F   N ++    K  +L+ +      ++    K D  +YN LM 
Sbjct: 269 LFNKMIFENINPNVYTF---NILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMD 325

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            +       KA  I+ ++ +   + +  +Y +MI    K  ++D A+ LF+EM   N  P
Sbjct: 326 RYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIP 385

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               + SL+D + K G++  ++K+  EM   G       Y S++++  K  ++D A+ L 
Sbjct: 386 DVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALL 445

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
            +M+  G +P+   +T +++   K+G+L+ A  +F D+   G++   + Y+ +++   S 
Sbjct: 446 TKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSH 505

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           G  D ++ L + M   G  P   TY  ++  L  +   D A K+L EM T G
Sbjct: 506 GLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRG 557



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 160/368 (43%), Gaps = 2/368 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I  L K  +   +    ++V     + +   YN ++       L  +AF++Y  M
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 238

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                S D  TY  +I      G++  A  LF +M   N  P+   F  LVD   K  RL
Sbjct: 239 VSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRL 298

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  V   M   G +P    Y SL++ Y    +++ A  +++ +   G  PN   ++++
Sbjct: 299 KEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIM 358

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K  K+D AM++F +M     +P   TY+ L++     G++  A+KL + M   G+
Sbjct: 359 IHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGV 418

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
                TY ++L  L K   VD A  +L +MK  G   D+     L+  + K+G ++ A  
Sbjct: 419 PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARI 478

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               +   G   +  I   + +    + L++ +  LL    E+    + V Y  ++  L 
Sbjct: 479 VFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLF 538

Query: 596 RCQDEQNE 603
             +DE ++
Sbjct: 539 D-KDENDK 545



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 168/381 (44%), Gaps = 7/381 (1%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226
           +   L  +  +  +L L R    +    P    Y  + D + + +  +    L+ EMV  
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGK-LVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMV-- 239

Query: 227 SSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
               GIS     YN +I       K++ +   F K++  +   +  ++N+L+  F  +  
Sbjct: 240 --SKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERR 297

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +A  +   M K     D  TY  ++        ++ A  +F  + +R   P+ + ++ 
Sbjct: 298 LKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSI 357

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           ++    K  ++D +M ++ EM      P    Y SLI+   K GK+  AL+L DEM   G
Sbjct: 358 MIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 417

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
              +   +  I+++  K+ ++D A+++ T M+  G  P   TY+ L++    +G+++ A 
Sbjct: 418 VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDAR 477

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI 525
            ++  +   G    ++ YTA++       L D +  +L +M+  G   +    ++++  +
Sbjct: 478 IVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSL 537

Query: 526 KD-GSVDHALRWLRFMGSSGI 545
            D    D A + LR M + G+
Sbjct: 538 FDKDENDKAEKLLREMITRGL 558



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 135/312 (43%), Gaps = 4/312 (1%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T   +I  L   G++  A++   ++    F  +   + +L++ + K G+   ++++   +
Sbjct: 144 TLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRV 203

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
            G   +P+  MY ++I+S  K   ++ A  L+ EM   G  P+   +  +I      GK+
Sbjct: 204 DGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKM 263

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A  +F  M      P   T++ L++      ++  A  +   M   G++P + TY +L
Sbjct: 264 KDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSL 323

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI 545
           +      K V+ A  I   +   G + ++ +  +++  + K   VD A+   + M  + I
Sbjct: 324 MDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNI 383

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605
             +      L +   K      A  L++   +     D + Y S+L  L  C++ Q ++ 
Sbjct: 384 IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDAL--CKNHQVDKA 441

Query: 606 LMAILSATKHKA 617
           + A+L+  K + 
Sbjct: 442 I-ALLTKMKDEG 452


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 151/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +    +VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 91  AIECYRLTREHKLWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 146

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLAS 206

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLA 266

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM + G +P+   +  +I+ 
Sbjct: 267 MEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDG 326

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S GL+P 
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 387 DRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 138/325 (42%), Gaps = 1/325 (0%)

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L+T +L  G    A E Y    + +  +   T   ++  L K          ++E+ E  
Sbjct: 78  LITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECG 137

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
           +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + G L+   
Sbjct: 138 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGF 197

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
           RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T++ L++ H
Sbjct: 198 RLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGH 257

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM   G   D 
Sbjct: 258 CKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDK 317

Query: 516 SASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
                L+    K+G +D A    + M    IR ++     L     +      A+ +L  
Sbjct: 318 FTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 377

Query: 575 YVESAAKVDLVLYTSVLAHLVRCQD 599
            +    K D   YT ++    +  D
Sbjct: 378 MLSVGLKPDDRTYTMIINEFCKKGD 402



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 139/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 166

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G L+   +L   M     +P    ++ L++ + K  
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 226

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 227 KMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYN 286

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M   G  P   TY  L++     G +D+A +    M   
Sbjct: 287 TLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQE 346

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM ++G    D + + ++  + K G V   
Sbjct: 347 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKG 406

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 407 SKLLKEMQRDG 417



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 97/225 (43%), Gaps = 36/225 (16%)

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
            ++E+   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+  + 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-V 515
             G ++   +L ++M ++G++P + TY+ L+  L K   +D A ++  EM   G   + V
Sbjct: 189 RLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGV 248

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575
           + + ++  + K+G VD A+                I +Q+   C+               
Sbjct: 249 TFTTLIDGHCKNGRVDLAME---------------IYKQMLSQCLLP------------- 280

Query: 576 VESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF 620
                  DL+ Y +++  L +  D +    L+  +S    K   F
Sbjct: 281 -------DLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKF 318


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 147/299 (49%), Gaps = 5/299 (1%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF-LNKGLPYKAFEIY 293
            +A+N ++  L K+  +  +   F  + D     D+++Y++L+  +  +  LP KA EI+
Sbjct: 125 LAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVP-DSKTYSILLEGWGKDPNLP-KAREIF 182

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
             M    C  D  TY +M+  L K+GR+D A+ +  EM     +P+  I++ LV + G  
Sbjct: 183 REMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIE 242

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
            R++ ++  ++EM+  G  P   +Y +LI ++ KA +L    R+ +EM   G  PN   F
Sbjct: 243 NRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTF 302

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
            +I+ S    G+ D A  +F  M +    P   TY+ +++M     ++  A+K++  M  
Sbjct: 303 NIILSSLIGRGETDEAYRVFLRMIKVC-EPDADTYTMMIKMFCERDELKKALKVWKYMKL 361

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVD 531
               P + T+  L+  L ++  V  A  +L EM   G     V+   +  + IK+G  D
Sbjct: 362 KRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGRED 420



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 2/177 (1%)

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           K+R++  S   F +++DS+ K  +      V   M+      +   +  ++  YA+A K+
Sbjct: 48  KQRHYNHSVKAFHTVIDSLAKIRQYQLMWDVVKVMKS-KRMVNVETFCIIMRKYARAQKV 106

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           + A+  ++ M      PN   F  ++ +  KS  +  A  IF D  +  F+P   TYS L
Sbjct: 107 EEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIF-DSIKDRFVPDSKTYSIL 165

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           LE       +  A +++  M S G RP + TY  ++ +L K   VD A  I+ EM +
Sbjct: 166 LEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDS 222


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 116/525 (22%), Positives = 222/525 (42%), Gaps = 54/525 (10%)

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           D +  L LFDE+V       + +FS    +I   +K   +E +Y  + ++     + +  
Sbjct: 340 DVNLALQLFDEVVEGGVVPDVVIFSV---LINGCSKVGDMEKAYELYTRMKLMGIQPNVF 396

Query: 272 SYNVLMTLFLNKGLPYKAFEIY-ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
             N L+  F  + L   A+ ++ E++E G  ++   TY +++  L + G+++ A  L+++
Sbjct: 397 IVNSLLEGFHEQNLLEHAYGLFDEAVEHGITNV--VTYNILLKWLGELGKVNEACNLWEK 454

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390
           M  +   PS   + +L+    K G +D +  +   +   G +P+A  Y  LI+ + K G 
Sbjct: 455 MVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGD 514

Query: 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
            + A  ++++M  A   P    F  +I    K+G++        +  + GF+ T  TY+ 
Sbjct: 515 SERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNS 574

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           +++     G VDSA+  Y  M  +G+ P + TYT+L+  L K   + +A ++  +MK  G
Sbjct: 575 IIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKG 634

Query: 511 YSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
             +DV A   L+  + K   ++ A ++   +   G+  N  +   +    +     E+A 
Sbjct: 635 MKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAAL 694

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPE 629
            L +  +++    DL +YTS++  L++                                E
Sbjct: 695 NLHQEMIKNKVPCDLQVYTSIIGGLLK--------------------------------E 722

Query: 630 QRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFP 689
            +    L    E    +  ++      Y   VL+N L   GQ+  A  + K    N + P
Sbjct: 723 GKLSLALDLYSEM---LSKDIVPDIVMY--TVLINGLSNNGQLENASKILKEMDGNNITP 777

Query: 690 KAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVP 734
             +V++  IA +    NL              R    ML  G+VP
Sbjct: 778 SVLVYNILIAGNFREGNL----------QEAFRLHDEMLDKGLVP 812



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 177/391 (45%), Gaps = 5/391 (1%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
           L +  +E    +    LFDE V    ++GI+    YN ++++L +  K+  +   ++K++
Sbjct: 401 LLEGFHEQNLLEHAYGLFDEAV----EHGITNVVTYNILLKWLGELGKVNEACNLWEKMV 456

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
                    SYN L+     KG   KA+ + +S+ +     +  TY L+I    K G  +
Sbjct: 457 SKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSE 516

Query: 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
            A  +F++M   N  P+ + F ++++ +GK GR+  +          G   ++  Y S+I
Sbjct: 517 RAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSII 576

Query: 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
           + + K G +D+AL  + EM  +G  P+   +T +I+   KS K+ +A+ + +DM+  G  
Sbjct: 577 DGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMK 636

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
                YS L++       ++SA K +  +   GL P    Y ++++       ++ A  +
Sbjct: 637 LDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNL 696

Query: 503 LLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             EM       D+   + ++   +K+G +  AL     M S  I  +  +   L      
Sbjct: 697 HQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSN 756

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           N   E+A  +L+    +     +++Y  ++A
Sbjct: 757 NGQLENASKILKEMDGNNITPSVLVYNILIA 787



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 197/426 (46%), Gaps = 23/426 (5%)

Query: 235 FSAYNRVIQYLAKA----DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
           F + +RV  YL K+    +K+  +  CF+ +L+ D        N L+T  + + +   A 
Sbjct: 146 FESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDAR 205

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           ++Y+ M +     D  T  +++ +  K G+ +   K F+E K R        ++ LV ++
Sbjct: 206 QLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAV 265

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            +   L+ + ++  EM+  G  PS   Y ++I +  K G    ALRL DEM   G   N 
Sbjct: 266 CRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNV 325

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
            +   +++ +   G +++A+ +F ++   G +P    +S L+   +  G ++ A +LY  
Sbjct: 326 IVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTR 385

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GS 529
           M   G++P +    +LL    ++ L++ A  +  E    G + +V   ++L+ ++ + G 
Sbjct: 386 MKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVTYNILLKWLGELGK 444

Query: 530 VDHALRWLRFMGSSGIRT-----NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
           V+ A      M S GI       NN I+    + CM     + A  +L++ +E   K + 
Sbjct: 445 VNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCM-----DKAYSMLKSILERGLKPNA 499

Query: 585 VLYTSVLAHLVRCQDEQN-----ERHLMAILSATKHKAHAFLCGLF-TGPEQRKQPVL-S 637
           V YT ++    +  D +      E+ + A ++ T H  +  + GL  TG     Q  L +
Sbjct: 500 VTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNN 559

Query: 638 FVREFF 643
           F+++ F
Sbjct: 560 FIKQGF 565



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 146/328 (44%), Gaps = 3/328 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y +L D   +  D +    +F++M+   + N       +N VI  L K  ++  +
Sbjct: 497 PNAVTYTLLIDGFFKKGDSERAFVVFEQMM---AANIAPTDHTFNTVINGLGKTGRVSET 553

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                  +       + +YN ++  F  +G    A   Y  M +   S D  TY  +I  
Sbjct: 554 QDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDG 613

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L KS ++  A+++  +MK +  +     +++L+D   K   ++++ K + E+   G  P+
Sbjct: 614 LCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPN 673

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
             +Y S+I  +     ++ AL L  EM       +  ++T II    K GKL +A+ +++
Sbjct: 674 TVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYS 733

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M     +P    Y+ L+   +++GQ+++A K+   M    + P +  Y  L+    +  
Sbjct: 734 EMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIAGNFREG 793

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVLM 522
            +  A ++  EM   G   D +  D+L+
Sbjct: 794 NLQEAFRLHDEMLDKGLVPDDTTYDILV 821



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 11/234 (4%)

Query: 205 DVLNESRDFDGM-----LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           DV+  +   DG+     + L  EM  D    G+ L   AY+ +I    K   +E +   F
Sbjct: 603 DVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFF 662

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++LD     +T  YN +++ F++      A  +++ M K +   D   Y  +I  L K 
Sbjct: 663 TELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKE 722

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G+L  A+ L+ EM  ++  P   ++  L++ +   G+L+ + K+  EM G    PS  +Y
Sbjct: 723 GKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVY 782

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
             LI    + G L  A RL DEM   G  P+   + +++     +GKL ++ ++
Sbjct: 783 NILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILV-----NGKLKVSHTL 831



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/453 (17%), Positives = 175/453 (38%), Gaps = 40/453 (8%)

Query: 310 LMIPSLAKSGRLDAAIKLFQEM-KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            ++  L+      +A+K F ++ ++R F  + +  + L+  +    +  +S++  +    
Sbjct: 63  FLVTLLSHKSNPKSALKFFHQVERKRGFVKTVDFISLLIHILSSNSKTCSSLQFLLNNYV 122

Query: 369 CGH-RPSAPMYVS--------------------LIESYAKAGKLDTALRLWDEMRIAGFR 407
            G   PSA ++V                     L++S+ +  K+  A+  +  M      
Sbjct: 123 FGDATPSAKVFVECLLECSGRYGFESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLV 182

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P   +   ++ +  +   +  A  ++ +M   G      T   ++      G+ +   K 
Sbjct: 183 PWVPIMNNLLTAMVRRNMVCDARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKF 242

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIK 526
           +      GL    + Y+ L+  + +R  +++A ++L EM+  G+       + V++  +K
Sbjct: 243 FKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVK 302

Query: 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVL 586
            G+   ALR    M S G+  N  + R L +          A  L +  VE     D+V+
Sbjct: 303 QGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVI 362

Query: 587 YTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCG-LFTGPEQRKQPVLSFVREFFHG 645
           ++ ++    +  D +    L   +     + + F+   L  G  +  Q +L      F  
Sbjct: 363 FSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHE--QNLLEHAYGLF-- 418

Query: 646 IDYELEEGAARYFV-NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV 704
            D  +E G       N+LL +L  +G++N A  +W+      + P  + ++         
Sbjct: 419 -DEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYN--------- 468

Query: 705 RNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRI 737
            NL +G      M   +   K +L  G+ P  +
Sbjct: 469 -NLILGHCKKGCMDKAYSMLKSILERGLKPNAV 500


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 151/324 (46%), Gaps = 5/324 (1%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I       ++  S+    K+L    + DT + N LM     KG   ++   ++ +  
Sbjct: 104 NILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVA 163

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
               ++  +Y  ++  L K G    A+KL + +++R+ RP   ++++++D + K   ++ 
Sbjct: 164 QGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQ 223

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +   + EM   G  P+   Y +LI  +  AG+L  A  L +EM +    PN   + ++I+
Sbjct: 224 AYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILID 283

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +  K GK+  A  +  +M   G      TY+ +L+    S  +D A  L+  M   G++P
Sbjct: 284 ALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQP 343

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
              TYTAL+  L K   +  A K+   +   G  +DV   +V++  + K+G  D AL   
Sbjct: 344 NKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMK 403

Query: 538 RFMGSSGIRTN----NFIVRQLFE 557
             M  +G   N    + I+R LFE
Sbjct: 404 SKMEDNGCIPNAVTFDIIIRSLFE 427



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 112/239 (46%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  L K   +  +Y  F ++       +  +Y+ L+  F   G    AF +   M 
Sbjct: 208 YSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMI 267

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + +  TY ++I +L K G++  A KL  EM  +        + S++D + K+  LD
Sbjct: 268 LKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLD 327

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  ++M+M+  G +P+   Y +LI+   K G+L  A +L+  + + G   +   + ++I
Sbjct: 328 KATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMI 387

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
               K G  D A+++ + ME  G +P   T+  ++       + D A KL + M + GL
Sbjct: 388 SGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKGL 446



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 118/274 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  ++  L K  +   +    + + D   + D   Y+ ++       +  +A++ +  M
Sbjct: 172 SYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEM 231

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  +  TY  +I     +G+L  A  L  EM  +N  P+   +  L+D++ K G++
Sbjct: 232 NARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKV 291

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + K+  EM   G       Y S+++   K+  LD A  L+ +M+  G +PN   +T +
Sbjct: 292 KEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTAL 351

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+   K G+L  A  +F  +   G      TY+ ++      G  D A+ + + M   G 
Sbjct: 352 IDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGC 411

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            P   T+  ++  L ++   D A K+L  M   G
Sbjct: 412 IPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKG 445



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 126/291 (43%), Gaps = 1/291 (0%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           T  ++I      G++  +  +  ++ +  ++P      +L+  +   G +  S+  + ++
Sbjct: 102 TLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKV 161

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G + +   Y +L+    K G+   A++L   +     RP+  +++ II+   K   +
Sbjct: 162 VAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIV 221

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
           + A   F++M   G  P   TYS L+     +GQ+  A  L N M    + P + TY  L
Sbjct: 222 NQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNIL 281

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545
           +  L K   V  A K+L EM   G   D V+ + VL    K  ++D A      M   GI
Sbjct: 282 IDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGI 341

Query: 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           + N +    L +   K    ++A+ L +  +     +D+  Y  +++ L +
Sbjct: 342 QPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCK 392



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 114/272 (41%), Gaps = 10/272 (3%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           I ++  ++ L R  + +S   P    Y  + D L + +  +     F EM      N   
Sbjct: 183 IGETRCAVKLLRMIEDRSTR-PDVVMYSTIIDGLCKDKIVNQAYDFFSEM------NARG 235

Query: 234 LFS---AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
           +F     Y+ +I     A +L  ++    +++  +   +  +YN+L+     +G   +A 
Sbjct: 236 IFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAK 295

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           ++   M       D  TY  ++  L KS  LD A  LF +MK+   +P+   + +L+D +
Sbjct: 296 KLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGL 355

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K GRL  + K++  +   G       Y  +I    K G  D AL +  +M   G  PN 
Sbjct: 356 CKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNA 415

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
             F +II S  +  + D A  +   M   G L
Sbjct: 416 VTFDIIIRSLFEKDENDKAEKLLHGMIAKGLL 447



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/381 (19%), Positives = 143/381 (37%), Gaps = 13/381 (3%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +D  +  F  +      P    F  ++  + K     T++ +  +M+  G  P+      
Sbjct: 46  VDDTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNI 105

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI  +   G++  +  +  ++   G++P+      +++     G++  ++     +   G
Sbjct: 106 LINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQG 165

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           F     +Y  LL      G+   A+KL   +     RP +  Y+ ++  L K K+V+ A 
Sbjct: 166 FQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAY 225

Query: 501 KILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
               EM   G   +V + S ++  +   G +  A   L  M    I  N +    L ++ 
Sbjct: 226 DFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDAL 285

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL-----SATK 614
            K    + AK LL          D+V Y SVL  L + Q+      L   +        K
Sbjct: 286 CKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNK 345

Query: 615 HKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINR 674
           +   A + GL  G   +    L F      G   ++         NV+++ L   G  ++
Sbjct: 346 YTYTALIDGLCKGGRLKNAQKL-FQHLLVKGCCIDVRT------YNVMISGLCKEGMFDK 398

Query: 675 ARCVWKVAYENKLFPKAIVFD 695
           A  +     +N   P A+ FD
Sbjct: 399 ALAMKSKMEDNGCIPNAVTFD 419


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 144/298 (48%), Gaps = 1/298 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N ++  L +A KL+ ++   K++L   C +D  SYN L++    K    +AF   + M K
Sbjct: 522 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK 581

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
                D  TY ++I  L    +++ AI+ + + K     P    ++ ++D   KA R + 
Sbjct: 582 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 641

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
             + + EM     +P+  +Y  LI +Y ++G+L  AL L ++M+  G  PN   +T +I+
Sbjct: 642 GQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIK 701

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
             +   +++ A  +F +M   G  P    Y+ L++ +   GQ+     L   M S  + P
Sbjct: 702 GMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP 761

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535
              TYT ++   A+   V  A+++L EM+  G   D ++  + +  Y+K G V  A +
Sbjct: 762 NKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 819



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 165/365 (45%), Gaps = 19/365 (5%)

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           N+L+T  +      K  E ++ + KG  S D   +   I +  K G+++ A+KLF +M+E
Sbjct: 243 NILLTSLVRANEFQKCCEAFDVVCKG-VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEE 301

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
               P+   F +++D +G  GR D +     +M   G  P+   Y  L++   +A ++  
Sbjct: 302 AGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGD 361

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  +  EM   GF PN  ++  +I+S  ++G L+ A+ I   M   G   T STY+ L++
Sbjct: 362 AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 421

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +  +GQ D+A +L   M S G      ++T+++ LL    + D A + + EM     S 
Sbjct: 422 GYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSP 481

Query: 514 DVSASDVLMVYI-KDGSVDHALR-WLRFMGSSGI---RTNNFIVRQLFESCMKNALYESA 568
                  L+  + K G    AL  W +F+    +   RT+N ++  L E+   +  +   
Sbjct: 482 GGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQ 541

Query: 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI-------LSATKHKAHAFL 621
           K +L         +D V Y ++++    C  ++ +   M +       L    +     +
Sbjct: 542 KEIL----GRGCVMDRVSYNTLISGC--CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 595

Query: 622 CGLFT 626
           CGLF 
Sbjct: 596 CGLFN 600



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 158/352 (44%), Gaps = 4/352 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD  L    EM+  +   G  L +    +I  L K  K   +   + + L+    +DT++
Sbjct: 464 FDSALRFVGEMLLRNMSPGGGLLTT---LISGLCKHGKHSKALELWFQFLNKGFVVDTRT 520

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
            N L+      G   +AF I + +    C +D  +Y  +I       +LD A     EM 
Sbjct: 521 SNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMV 580

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +R  +P    ++ L+  +    +++ +++ + + +  G  P    Y  +I+   KA + +
Sbjct: 581 KRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTE 640

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
                +DEM     +PN  ++  +I ++ +SG+L +A+ +  DM+  G  P  +TY+ L+
Sbjct: 641 EGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-Y 511
           +  +   +V+ A  L+  M   GL P +  YTAL+    K   +     +L EM +   +
Sbjct: 701 KGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH 760

Query: 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
              ++ + ++  Y +DG+V  A R L  M   GI  ++   ++     +K  
Sbjct: 761 PNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQG 812



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 156/360 (43%), Gaps = 8/360 (2%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCK---IDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           N ++  L +A+  E   CC  +  D  CK    D   +   +  F   G   +A +++  
Sbjct: 243 NILLTSLVRAN--EFQKCC--EAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSK 298

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           ME+   + +  T+  +I  L   GR D A    ++M ER   P+   ++ LV  + +A R
Sbjct: 299 MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKR 358

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           +  +  V  EM   G  P+  +Y +LI+S+ +AG L+ A+ + D M   G       +  
Sbjct: 359 IGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNT 418

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I+ + K+G+ D A  +  +M   GF     +++ ++ +  S    DSA++    M    
Sbjct: 419 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 478

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHAL 534
           + PG    T L++ L K      A ++  +    G+ VD   S+ L+  + + G +D A 
Sbjct: 479 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 538

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           R  + +   G   +      L   C      + A   L+  V+   K D   Y+ ++  L
Sbjct: 539 RIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 598



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 146/356 (41%), Gaps = 1/356 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +++ L +A ++  +Y   K++       +   YN L+  F+  G   KA EI + M
Sbjct: 345 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 404

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                SL  STY  +I    K+G+ D A +L +EM    F  +   F S++  +      
Sbjct: 405 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMF 464

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D++++   EM      P   +  +LI    K GK   AL LW +    GF  +      +
Sbjct: 465 DSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNAL 524

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +    ++GKLD A  I  ++   G +    +Y+ L+       ++D A    + M   GL
Sbjct: 525 LHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGL 584

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
           +P   TY+ L+  L     V+ A +   + K  G   DV    V++    K    +    
Sbjct: 585 KPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQE 644

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +   M S  ++ N  +   L  +  ++     A  L E         +   YTS++
Sbjct: 645 FFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 137/314 (43%), Gaps = 5/314 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCF 258
           Y  L D   E+   +  + + D MV      G+SL S+ YN +I+   K  + + +    
Sbjct: 381 YNNLIDSFIEAGSLNKAIEIKDLMV----SKGLSLTSSTYNTLIKGYCKNGQADNAERLL 436

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
           K++L     ++  S+  ++ L  +  +   A      M     S  G     +I  L K 
Sbjct: 437 KEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKH 496

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G+   A++L+ +   + F        +L+  + +AG+LD + ++  E+ G G       Y
Sbjct: 497 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSY 556

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +LI       KLD A    DEM   G +P+   ++++I       K++ A+  + D +R
Sbjct: 557 NTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR 616

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G LP   TYS +++    + + +   + ++ M S  ++P    Y  L+    +   + +
Sbjct: 617 NGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSM 676

Query: 499 AAKILLEMKTMGYS 512
           A ++  +MK  G S
Sbjct: 677 ALELREDMKHKGIS 690



 Score = 43.5 bits (101), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 83/216 (38%), Gaps = 36/216 (16%)

Query: 226 DSSKNG-ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
           D  +NG +     Y+ +I    KA++ E     F +++  + + +T  YN L+  +   G
Sbjct: 613 DCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSG 672

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK------------ 332
               A E+ E M+    S + +TY  +I  ++   R++ A  LF+EM+            
Sbjct: 673 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 732

Query: 333 -----------------------ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
                                   +N  P+   +  ++    + G +  + ++  EM+  
Sbjct: 733 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 792

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           G  P +  Y   I  Y K G +  A +  DE   A 
Sbjct: 793 GIVPDSITYKEFIYGYLKQGGVLEAFKGSDEENYAA 828


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 172/402 (42%), Gaps = 6/402 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCF 258
           Y +L D L + R+ D    L  EMV     +GI++    Y+  I  ++K   +E +   F
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVS----HGINIKPYMYDCCICVMSKEGVMEKAKALF 370

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
             ++ S      Q+Y  L+  +  +    + +E+   M+K    +   TY  ++  +  S
Sbjct: 371 DGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSS 430

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G LD A  + +EM     RP+  I+ +L+ +  +  R   +M+V  EM+  G  P    Y
Sbjct: 431 GDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCY 490

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            SLI   +KA ++D A     EM   G +PN   +   I  + ++ +   A     +M  
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G LP     + L+  +    +V  A   Y SM   G+     TYT L+  L K   VD 
Sbjct: 551 CGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 499 AAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A +I  EM+  G + DV +  VL+  + K G++  A      M   G+  N  I   L  
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              ++   E AK LL+         + V Y +++    +  D
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 136/647 (21%), Positives = 257/647 (39%), Gaps = 95/647 (14%)

Query: 132 ASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQS 191
           + A A+I  ++ +  W   L +    ++  P++V      K ++D    LS F W   Q 
Sbjct: 32  SDASAEIAGILKQENWRDTLVSSNLSIEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQK 91

Query: 192 W---------YVPGDECYVMLFD----------------------VLNESRDF-----DG 215
                     ++  D C    F+                      ++  S++F     DG
Sbjct: 92  VTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVAEVWSSIVRCSQEFVGKSDDG 151

Query: 216 ML--SLFDEMVHD----------SSKNGISLFSAYNR---VIQYLAKADKLEMSYCCFKK 260
           +L   LFD  +            SS  G+ L    +R   ++  L + ++L++ +  +K 
Sbjct: 152 VLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKG 211

Query: 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK----GECSLDGS---------- 306
           +++ +   D ++Y++L+      G      ++    EK       ++DG+          
Sbjct: 212 MVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICK 271

Query: 307 -------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
                  TY+++I  L K  RL+ A  L  EM         + ++ L+D + K    D +
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             +  EM   G      MY   I   +K G ++ A  L+D M  +G  P    +  +IE 
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEG 391

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + +   +     +  +M++   + +P TY  +++   SSG +D A  +   M ++G RP 
Sbjct: 392 YCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN 451

Query: 480 LSTYTALL-TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWL 537
           +  YT L+ T L   +  D A ++L EMK  G + D+   + L++ + K   +D A  +L
Sbjct: 452 VVIYTTLIKTFLQNSRFGD-AMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597
             M  +G++ N F         ++ + + SA   ++   E     + VL T ++     C
Sbjct: 511 VEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEY--C 568

Query: 598 QDEQNERHLMAILSATKH------KAHAFLC-GLFTGPEQRKQPVLSFVREFFHGIDYEL 650
           + E+      A  S          K +  L  GLF      K   +    E F  +    
Sbjct: 569 KKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLF------KNDKVDDAEEIFREMR--- 619

Query: 651 EEGAA--RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFD 695
            +G A   +   VL+N    +G + +A  ++    E  L P  I+++
Sbjct: 620 GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYN 666



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 179/421 (42%), Gaps = 25/421 (5%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI----SLFSAYNRVIQY 244
           ++    P   CY  L   L++++  D   S   EMV +  K       +  S Y    ++
Sbjct: 479 KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEF 538

Query: 245 LAKADKL--EMSYCCF--KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
            A ADK   EM  C     KVL +           L+  +  K    +A   Y SM    
Sbjct: 539 -ASADKYVKEMRECGVLPNKVLCTG----------LINEYCKKEKVIEACSAYRSMVDQG 587

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              D  TY +++  L K+ ++D A ++F+EM+ +   P    +  L++   K G +  + 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            ++ EM   G  P+  +Y  L+  + ++G+++ A  L DEM + G  PN   +  II+ +
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            KSG L  A  +F +M+  G +P    Y+ L++       V+ A+ ++ +    G     
Sbjct: 708 CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASST 766

Query: 481 STYTALLTLLAKRKLVDVAAKILLEM-----KTMGYSVDVSASDVLMVYIKDGSVDHALR 535
           + + AL+  + K    ++  ++L  +        G   DV+ + ++    K+G+++ A  
Sbjct: 767 APFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKE 826

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
               M ++ +         L     K        P+ +  + +  + D ++Y+ ++   +
Sbjct: 827 LFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFL 886

Query: 596 R 596
           +
Sbjct: 887 K 887



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 146/321 (45%), Gaps = 15/321 (4%)

Query: 194 VPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADK 250
           + GD + Y +L + L ++   D    +F EM       GI+  +FS Y  +I   +K   
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREM----RGKGIAPDVFS-YGVLINGFSKLGN 642

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           ++ +   F ++++     +   YN+L+  F   G   KA E+ + M       +  TY  
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY-MEMQGC 369
           +I    KSG L  A +LF EMK +   P   ++ +LVD   +   ++ ++ ++    +GC
Sbjct: 703 IIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGC 762

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF----RPNFGLFTMIIESHAKSGK 425
               +AP + +LI    K GK +    + + +    F    +PN   + ++I+   K G 
Sbjct: 763 AS-STAP-FNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGN 820

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           L+ A  +F  M+ A  +PT  TY+ LL  +   G+      +++   +AG+ P    Y+ 
Sbjct: 821 LEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSV 880

Query: 486 LLTLLAKRKLVDVAAKILLEM 506
           ++    K  +   A  ++ +M
Sbjct: 881 IINAFLKEGMTTKALVLVDQM 901



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 105/262 (40%), Gaps = 13/262 (4%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  + D   +S D      LFDEM     K  +     Y  ++    + + +E +
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEM---KLKGLVPDSFVYTTLVDGCCRLNDVERA 751

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS----TYEL 310
              F       C   T  +N L+      G      E+   +  G     G     TY +
Sbjct: 752 ITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNI 810

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           MI  L K G L+AA +LF +M+  N  P+   + SL++   K GR      V+ E    G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA-----GFRPNFGLFTMIIESHAKSGK 425
             P   MY  +I ++ K G    AL L D+M        G + +      ++   AK G+
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGE 930

Query: 426 LDIAMSIFTDMERAGFLPTPST 447
           +++A  +  +M R  ++P  +T
Sbjct: 931 MEVAEKVMENMVRLQYIPDSAT 952


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 178/410 (43%), Gaps = 9/410 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L D    +R  D   +    ++    K G    + + + + +  + D  E       
Sbjct: 127 YGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTD--EAVDVLLH 184

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM--EKGECSLDGSTYELMIPSLAK 317
           ++ +  C  D  SYN ++          +A ++ + M  E G CS D  ++  +I    K
Sbjct: 185 RMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFK 244

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G +  A  LF EM ++   P    + S+VD++ KA  +D +  V  +M   G  P    
Sbjct: 245 QGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVT 304

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y ++I  Y+ +G    + +++ +M   G  P+   F+  + S  K G+   A  IF  M 
Sbjct: 305 YNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMT 364

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G +P   +YS LL  +A+ G+      L++SM   G+         L++  AKR ++D
Sbjct: 365 TKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMD 424

Query: 498 VAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A  +  EM+  G   + V+ S ++  + + G +  A+     M S GI  N  +   L 
Sbjct: 425 EAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLI 484

Query: 557 ES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV---RCQDEQN 602
              CM   L ++ + + E   +   + ++V ++S++  L    R  D Q+
Sbjct: 485 HGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQD 534



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/525 (21%), Positives = 212/525 (40%), Gaps = 45/525 (8%)

Query: 114 PGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPE-LETQLDKLQFVPKMVHITQALK 172
           P F   ++  G+K   + A+   K +    R     + L  ++ +L  VP  +     +K
Sbjct: 144 PAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIK 203

Query: 173 -VINDSDTSLSL---FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS 228
            +  DS +  +L    R AK      P    +  +     +  +     +LF+EMV    
Sbjct: 204 SLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQ--- 260

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           K  +     YN ++  L KA  ++ +    ++++D   + D  +YN ++  +   G   +
Sbjct: 261 KGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKE 320

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF-------- 340
           + +++  M       D  T+   + SL K GR   A ++FQ M  +   P          
Sbjct: 321 SAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLH 380

Query: 341 ------------NIFASLVD---------------SMGKAGRLDTSMKVYMEMQGCGHRP 373
                       N+F S+ D               +  K G +D +M V+ EMQG G RP
Sbjct: 381 GYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRP 440

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           +   Y +LI ++ + G+L  A+  + +M   G  PN  ++  +I      G L  A    
Sbjct: 441 NVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFI 500

Query: 434 TDMERAGF-LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           ++M   G   P    +S ++      G+V  A  ++N +   G RP + T+ +L+     
Sbjct: 501 SEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCL 560

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFI 551
              ++ A  +L  M ++G   DV  ++ L+  Y K G +D  L   R M    ++     
Sbjct: 561 VGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVT 620

Query: 552 VRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              + +  ++     +AK +    ++S   VD+  Y  +L  L R
Sbjct: 621 YNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR 665



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 107/533 (20%), Positives = 218/533 (40%), Gaps = 15/533 (2%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVI---NDSDTS 180
           G++   +  +A+         WK   ++  ++     +P  V  +  +  +     S  +
Sbjct: 297 GVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDA 356

Query: 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNR 240
             +F++   +  ++P    Y +L         F  M +LF  M   + K  +S     N 
Sbjct: 357 EEIFQYMTTKG-HMPDIVSYSILLHGYATEGRFADMNNLFHSM---ADKGIVSNCHCINI 412

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I   AK   ++ +   F ++     + +  +Y+ L++ F   G    A E +  M    
Sbjct: 413 LISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIG 472

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF-RPSFNIFASLVDSMGKAGRLDTS 359
              + + Y  +I      G L  A +   EM  +   RP+   F+S++ S+   GR+  +
Sbjct: 473 IEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDA 532

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             V+  +   G RP+   + SLI+ Y   GK++ A  + D M   G  P+      ++  
Sbjct: 533 QDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSG 592

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + KSGK+D  + +F +M      PT  TY+ +L+    +G+  +A K+++ M  +G    
Sbjct: 593 YCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVD 652

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLR 538
           + TY  LL  L +  L D A  +  ++  M    D++  + ++    K    + A     
Sbjct: 653 IDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFA 712

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
            + +SG+  N      +  + +K    E A  +  +  +S       L   ++  L++  
Sbjct: 713 AISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKG 772

Query: 599 DEQNERHLMAILSAT----KHKAHAFLCGLFTGPEQRKQPV--LSFVREFFHG 645
           D     + M+ +  T    +    + L  LF+   + ++ +  L    +FF+G
Sbjct: 773 DIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGKHREQIKFLPAKYQFFYG 825


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 128/271 (47%), Gaps = 3/271 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L LFDEM   + K  I     Y  +I  + KA ++E +     ++      ++   +N L
Sbjct: 350 LVLFDEM---TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTL 406

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +  +   G+  +A  +   MEK     D   Y  +   L K  R D A  L   M ER  
Sbjct: 407 IDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGV 466

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P+   F +L+D   K G    + +V+ EM+  G+ P+   Y  LI+ Y+K G +  A +
Sbjct: 467 SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHK 526

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L DE+   G  P+    T +I      GK+D+A+ +F +M + G +P   TY+ ++   +
Sbjct: 527 LKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLS 586

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
             G+ + A KLY+ M   GL P  + Y++L+
Sbjct: 587 KDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 617



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 191/451 (42%), Gaps = 40/451 (8%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           +L  F   +++ +++    C V L   L      D  L  F  MV+   +  ++++S   
Sbjct: 174 ALEAFEHMEKKGFHIDERSCLVYLL-ALRRGGQVDSCLRFFRRMVNLDVE--VTVYS-LT 229

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            V+  L K   +EM      +V     K +  +YN  +  +  +       EI   MEK 
Sbjct: 230 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 289

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
             + +  TY L+I   +  G+++ A +LF+EM+E+       ++ S++    ++G +  +
Sbjct: 290 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 349

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           + ++ EM   G  PSA  Y +LI    KAG+++ A  L +EM+  G   N  +F  +I+ 
Sbjct: 350 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 409

Query: 420 HAKSGKLDIAMSIFTDMERAGF-----------------------------------LPT 444
           + +SG +D A+ +   ME+ G                                     P 
Sbjct: 410 YCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPN 469

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             +++ L++++   G    A +++  M   G  P + TY  L+   +KR  +  A K+  
Sbjct: 470 TMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKD 529

Query: 505 EMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563
           E++  G   DV + + ++     DG VD AL+    M   G+  N      +     K+ 
Sbjct: 530 ELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDG 589

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
             E A  L +   E+    D  +Y+S++  L
Sbjct: 590 RSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 620



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 192/438 (43%), Gaps = 24/438 (5%)

Query: 163 KMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDE 222
           + VH+  +  ++  +++ L  F +  R+++Y P    Y+ L   L  SR  D +      
Sbjct: 55  QTVHLILSNHILT-AESCLDFFHFI-RKNYYKPDLRAYITLIFKLYRSRKSDKL------ 106

Query: 223 MVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC--------KIDTQSYN 274
             H S K     F+    +    A  D L +       ++D  C        K   + ++
Sbjct: 107 --HKSQK-----FAEIRHLFNCAAVDDGLRVPVTVIASLVDDACNESKCNRAKFKEKFFD 159

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           +L  ++ +  +  +A E +E MEK    +D  +  + + +L + G++D+ ++ F+ M   
Sbjct: 160 LLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNL 219

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
           +   +      ++D + K G ++   K+  E+   G + +   Y + IE Y K   L   
Sbjct: 220 DVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGV 279

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
             +   M   G   N   +T++I   +  GK++ A  +F +M   G       Y+ ++  
Sbjct: 280 AEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISC 339

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +  SG V  A+ L++ MT  GL P   TY AL+  + K   ++ A  ++ EM+  G  ++
Sbjct: 340 NCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLN 399

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V  + ++  Y + G VD ALR    M   G+ ++ F    +     K    + AK LL 
Sbjct: 400 PVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLF 459

Query: 574 TYVESAAKVDLVLYTSVL 591
           + VE     + + +T+++
Sbjct: 460 SMVERGVSPNTMSFTTLI 477



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YNVL+  +  +G   +A ++ + +E      D  T   +I      G++D A+KLF EM
Sbjct: 507 TYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEM 566

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +R   P+   + +++  + K GR + + K+Y EM+  G  P   +Y SL+ S   A
Sbjct: 567 PQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSA 623


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 146/322 (45%), Gaps = 9/322 (2%)

Query: 288  KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
             A EI+  MEK     D  TY  +I  L  SGR   A +L ++M +R   P+   F +L+
Sbjct: 738  NALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALI 797

Query: 348  DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
            D+  K G L  +  +Y EM      P+   Y SLI  +   G+L  A  ++D M   G  
Sbjct: 798  DTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCF 857

Query: 408  PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
            P+   +  +I    KS +++  M +F +M   G +    TY+ L+  +  +G+++ A K+
Sbjct: 858  PDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 917

Query: 468  YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-K 526
            +N M   G+ P + TY  LL  L     ++ A  ++ +++     VD+   ++++  + +
Sbjct: 918  FNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCR 977

Query: 527  DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL-----ETYVESAAK 581
            +  V  A    R +   G++ +      +     +N L   A  L      + ++ S   
Sbjct: 978  NDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERI 1037

Query: 582  VDLVL---YTSVLAHLVRCQDE 600
             D  L   YTS+ A L++   E
Sbjct: 1038 YDETLRDHYTSLSAELIKAVHE 1059



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 162/385 (42%), Gaps = 4/385 (1%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           FD    LF EM+       I  F+   RV+  +AK +K ++    F K+ +     D  S
Sbjct: 596 FDDAFGLFCEMLQSRPIPSIVDFT---RVLTAIAKMNKFDIVIYLFHKMENLGISHDLYS 652

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           + +L+  F        A  +   M K        T   ++    +  R   A+ L   M 
Sbjct: 653 FTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMA 712

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           E    P+  I+ ++++ + K   L+ +++++  M+  G    A  Y +LI     +G+  
Sbjct: 713 ELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWT 772

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A RL  +M      PN   FT +I++  K G L  A +++ +M R    P   TY+ L+
Sbjct: 773 DAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLI 832

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
                 G++  A  +++ M S G  P + TY  L+T   K K V+   K+  EM   G  
Sbjct: 833 NGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLV 892

Query: 513 VDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D    + L+  Y + G ++ A +    M   G+  +      L +    N   E A  +
Sbjct: 893 GDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVM 952

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
           +E   ++   VD++ Y  ++  + R
Sbjct: 953 VEDLQKNQMDVDIITYNIIIQGMCR 977



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 127/278 (45%), Gaps = 1/278 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN L+T     G   +A  I   M K   + D  T+  +I +  K G LD A +L+
Sbjct: 205 DLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELY 264

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           ++M + +  P+   + SL++ +   GRL  + K +  M   G  P+   Y +LI  + K+
Sbjct: 265 KQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKS 324

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
            +++  ++L+  M   G   +   +  +I  + + GKL +A  IF+ M   G  P   T+
Sbjct: 325 RRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITH 384

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             LL     +G++ SAM  +N M S     G+  Y  ++  L K   V+ A ++   +  
Sbjct: 385 CILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPV 444

Query: 509 MGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGI 545
            G   D     ++++ + K+G    A    R M   GI
Sbjct: 445 EGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 1/216 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEK-GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           YN L+      G    A E+   MEK G  + D  TY  ++  L  SG    A ++ ++M
Sbjct: 173 YNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDM 232

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
            +R   P    F +L+D+  K G LD + ++Y +M      P+   Y SLI      G+L
Sbjct: 233 TKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRL 292

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A + +D M   G  PN   +  +I    KS +++  M +F  M R G +    TY+ L
Sbjct: 293 YHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTL 352

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
           +  +   G++  A  +++ M S G+ P + T+  LL
Sbjct: 353 IHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILL 388



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 135/315 (42%), Gaps = 3/315 (0%)

Query: 203  LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262
            L +   +   F   +SL D M     +  + +   YN VI  L K   L  +   F  + 
Sbjct: 691  LLNGFCQGNRFQEAVSLVDSMAELGLEPNVVI---YNTVINGLCKNRDLNNALEIFYGME 747

Query: 263  DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322
                  D  +YN L++   N G    A  +   M K +   +   +  +I +  K G L 
Sbjct: 748  KKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLL 807

Query: 323  AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382
             A  L++EM  R+  P+   + SL++     GRL  +  ++  M   G  P    Y +LI
Sbjct: 808  EAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLI 867

Query: 383  ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442
              + K+ +++  ++L+ EM   G   +   +  +I  + ++GKL++A  +F  M   G  
Sbjct: 868  TGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVP 927

Query: 443  PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
            P   TY+ LL+   ++G+++ A+ +   +    +   + TY  ++  + +   V  A  +
Sbjct: 928  PDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCL 987

Query: 503  LLEMKTMGYSVDVSA 517
               +   G  +D  A
Sbjct: 988  FRSLTRKGVKLDAIA 1002



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 139/348 (39%), Gaps = 7/348 (2%)

Query: 143  NRWKWGPELETQLDKLQFVPKMV---HITQALKVINDSDTSLSLFRWAKRQSWYVPGDEC 199
            NR++    L   + +L   P +V    +   L    D + +L +F +   +   V     
Sbjct: 699  NRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIF-YGMEKKGIVADAVT 757

Query: 200  YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
            Y  L   L  S  +     L  +MV       +  F+A   +I    K   L  +   +K
Sbjct: 758  YNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTA---LIDTFVKEGNLLEAKNLYK 814

Query: 260  KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +++      +  +YN L+  F  +G    A  +++ M    C  D  TY  +I    KS 
Sbjct: 815  EMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSK 874

Query: 320  RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
            R++  +KLF EM  +        + +L+    +AG+L+ + KV+  M  CG  P    Y 
Sbjct: 875  RVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYN 934

Query: 380  SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
             L++     GK++ AL + ++++      +   + +II+   ++ K+  A  +F  + R 
Sbjct: 935  ILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRK 994

Query: 440  GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            G       Y  ++     +G    A KL   M   G  P    Y   L
Sbjct: 995  GVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIYDETL 1042



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 111/242 (45%), Gaps = 2/242 (0%)

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R + ++ +++EM      PS   +  L+ + A   + +T +    +M + G   +   FT
Sbjct: 45  RFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFT 104

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I    +  +L +A+SI   M + G+ P+  T+  LL       ++  A  L  SM  +
Sbjct: 105 ILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKS 164

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYI-KDGSVDH 532
           G  P +  Y  L+  L K   V++A ++L EM+  G  + D+   + L+  +   G    
Sbjct: 165 GYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQ 224

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A R LR M    I  + F    L ++ +K    + A+ L +  ++S+   + V Y S++ 
Sbjct: 225 AARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLIN 284

Query: 593 HL 594
            L
Sbjct: 285 GL 286



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 122/284 (42%), Gaps = 4/284 (1%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           ++ ++A   R +  I   Q+M+          F  L+    +  RL  ++ +  +M   G
Sbjct: 71  LLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLG 130

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           + PS   + SL+  +    ++  A  L   M  +G+ PN  ++  +I+   K+G ++IA+
Sbjct: 131 YDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIAL 190

Query: 431 SIFTDMERAGFLPTP-STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
            +  +ME+ G L     TY+ LL     SG+   A ++   MT   + P + T+TAL+  
Sbjct: 191 ELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDA 250

Query: 490 LAKRKLVDVAAKILLEM--KTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547
             K+  +D A ++  +M   ++G +  V+ + ++      G + HA +    M S G   
Sbjct: 251 FVKQGNLDEAQELYKQMLQSSIGPNT-VTYNSLINGLCMHGRLYHAKKTFDLMASKGCFP 309

Query: 548 NNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           N      L     K+   E    L +         D   Y +++
Sbjct: 310 NVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLI 353



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 1/238 (0%)

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           + D +  ++ EM      PS   +  ++ + AK  K D  + L+ +M   G   +   FT
Sbjct: 595 KFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFT 654

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I    +  +  +A+++   M + GF P+  T   LL       +   A+ L +SM   
Sbjct: 655 ILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAEL 714

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
           GL P +  Y  ++  L K + ++ A +I   M+  G   D    + L+  +   G    A
Sbjct: 715 GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDA 774

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            R LR M    I  N      L ++ +K      AK L +  +  +   +++ Y S++
Sbjct: 775 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLI 832



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 102/240 (42%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +  +I    K   L+ +   +K++L S    +T +YN L+      G  Y A + ++ M
Sbjct: 243 TFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLM 302

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  +  TY  +I    KS R++  +KLFQ M           + +L+    + G+L
Sbjct: 303 ASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKL 362

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +  ++  M  CG  P    +  L+      G++ +A+  +++MR          + ++
Sbjct: 363 RVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIM 422

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+ K++ A  +F  +   G  P   TY+ ++     +G    A +L+  M   G+
Sbjct: 423 IHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 94/506 (18%), Positives = 186/506 (36%), Gaps = 62/506 (12%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AYN +I  L KADK+E ++  F ++     K D ++Y +++      G   +A E++  M
Sbjct: 418 AYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRM 477

Query: 297 EKGE--CSL-DGSTYELMIPSLAKSGRLDAAIKLFQEMKERN----FRPSFNIFASLVD- 348
           ++    C   DG   E    +    G +    K  + + E      +     +++SLV  
Sbjct: 478 KEDGIICQAEDGHLGEHGTNNQVSLGTIIICPKRRRSIMESGDLYYYYSDTTLWSSLVGL 537

Query: 349 -SMGKAGRLDTSMKVYMEMQGCGHRPSA---------------PMYVSLIESYAKAGKLD 392
             +  +  +   ++ ++ +   G+ P +                 Y   + S     K D
Sbjct: 538 IPIASSSSVKGFVRRHLLLLERGNNPESRSFSGASHHHHHHHHHHYRERLRSELHCIKFD 597

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A  L+ EM  +   P+   FT ++ + AK  K DI + +F  ME  G      +++ L+
Sbjct: 598 DAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILI 657

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
                  +   A+ L   M   G +P + T  +LL    +      A  ++  M  +G  
Sbjct: 658 HCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLE 717

Query: 513 VDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            +V   + V+    K+  +++AL     M   GI  +      L      +  +  A  L
Sbjct: 718 PNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARL 777

Query: 572 LETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQR 631
           L   V+     +++ +T+++   V+      E +L+                      + 
Sbjct: 778 LRDMVKRKIDPNVIFFTALIDTFVK------EGNLL----------------------EA 809

Query: 632 KQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKA 691
           K      +R   H            Y  N L+N   + G++  A+ ++ +      FP  
Sbjct: 810 KNLYKEMIRRSVH-------PNILTY--NSLINGFCIQGRLGDAKHMFDLMVSKGCFPDV 860

Query: 692 IVFDQHIAWSLDVRNLSVGAALIAVM 717
           + ++  I      + +  G  L   M
Sbjct: 861 VTYNTLITGFCKSKRVEDGMKLFCEM 886



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 87/205 (42%), Gaps = 3/205 (1%)

Query: 219  LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
            +FD MV   SK        YN +I    K+ ++E     F ++       D  +YN L+ 
Sbjct: 847  MFDLMV---SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIH 903

Query: 279  LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
             +   G    A +++  M       D  TY +++  L  +G+++ A+ + +++++     
Sbjct: 904  GYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDV 963

Query: 339  SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
                +  ++  M +  ++  +  ++  +   G +  A  Y+++I    + G    A +L 
Sbjct: 964  DIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLC 1023

Query: 399  DEMRIAGFRPNFGLFTMIIESHAKS 423
              M+  GF P+  ++   +  H  S
Sbjct: 1024 TRMKEDGFMPSERIYDETLRDHYTS 1048



 Score = 44.3 bits (103), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 60/298 (20%), Positives = 117/298 (39%), Gaps = 8/298 (2%)

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           + + A+ +F +M ++  LP+   ++ LL   A+  + ++ +     M   G+   L ++T
Sbjct: 45  RFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFT 104

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSS 543
            L+    +   + +A  IL +M  +GY    V+   +L  +     +  A   +  M  S
Sbjct: 105 ILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKS 164

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLL-ETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           G   N  +   L +   KN     A  LL E   +     DLV Y ++L  L    + + 
Sbjct: 165 GYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQ 224

Query: 603 ERHLMAILSATKHKAHAFLCGLFTGPEQR--KQPVLSFVREFFHGIDYELEEGAARYFVN 660
              ++  ++  +     F    FT       KQ  L   +E +  +  +   G      N
Sbjct: 225 AARILRDMTKRRINPDVFT---FTALIDAFVKQGNLDEAQELYKQM-LQSSIGPNTVTYN 280

Query: 661 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMH 718
            L+N L + G++  A+  + +      FP  + ++  I      R +  G  L   M+
Sbjct: 281 SLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMY 338


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 146/328 (44%), Gaps = 1/328 (0%)

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
           L+ +C  D  +Y +L+     +    +A ++ + M    C  D  TY +++  + K GRL
Sbjct: 8   LEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRL 67

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           D AIK    M     +P+      ++ SM   GR   + K+  EM   G  PS   +  L
Sbjct: 68  DEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNIL 127

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I    + G L  A+ + ++M   G  PN   +  ++    K  K+D A+     M   G 
Sbjct: 128 INFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGC 187

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   TY+ +L      G+VD+A++L N ++S G  P L TY  ++  L+K    D A +
Sbjct: 188 YPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVE 247

Query: 502 ILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           +L EM+  G   DV + S ++    ++G V+ A+++   +   G++ N F    +     
Sbjct: 248 LLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLC 307

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYT 588
           K    + A   L   +    K   V YT
Sbjct: 308 KAQQTDRAIDFLAYMISKGCKPTEVSYT 335



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 127/257 (49%)

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           C     ++N+L+     KGL  +A +I E M    C+ +  +Y  ++    K  ++D AI
Sbjct: 117 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAI 176

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +  + M  R   P    + +++ ++ K G++D ++++  ++   G  P    Y ++I+  
Sbjct: 177 QYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 236

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
           +K GK D A+ L  EMR  G +P+   ++ +I   ++ GK++ A+  F D+E  G  P  
Sbjct: 237 SKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNA 296

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ ++     + Q D A+     M S G +P   +YT L+  +A   L   A ++L E
Sbjct: 297 FTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNE 356

Query: 506 MKTMGYSVDVSASDVLM 522
           + + G     SA  V++
Sbjct: 357 LCSRGVVKKSSAEQVVV 373



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 126/258 (48%), Gaps = 3/258 (1%)

Query: 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278
           L  EMV       +  F   N +I +L +   L  +    +K+    C  ++ SYN L+ 
Sbjct: 108 LLTEMVRKGCSPSVVTF---NILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLH 164

Query: 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
            F  +    +A +  E M    C  D  TY  M+ +L K G++DAA++L  ++  +   P
Sbjct: 165 GFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSP 224

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               + +++D + K G+ D ++++  EM+G G +P    Y SLI   ++ GK++ A++ +
Sbjct: 225 VLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFF 284

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
            ++   G +PN   +  I+    K+ + D A+     M   G  PT  +Y+ L+E  A+ 
Sbjct: 285 HDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANE 344

Query: 459 GQVDSAMKLYNSMTSAGL 476
           G    A++L N + S G+
Sbjct: 345 GLAKEALELLNELCSRGV 362



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 137/318 (43%), Gaps = 3/318 (0%)

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
            E+ +   + EC  D  TY ++I +      +  A+KL  EM  R  +P    +  LV+ 
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           M K GRLD ++K    M   G +P+   +  ++ S    G+   A +L  EM   G  P+
Sbjct: 61  MCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPS 120

Query: 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469
              F ++I    + G L  A+ I   M   G  P   +Y+ LL       ++D A++   
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180

Query: 470 SMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDG 528
            M S G  P + TY  +LT L K   VD A ++L ++ + G S V ++ + V+    K G
Sbjct: 181 IMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVG 240

Query: 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYT 588
             D A+  L  M   G++ +      L     +    E A            K +   Y 
Sbjct: 241 KTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYN 300

Query: 589 SVLAHLVRCQDEQNERHL 606
           S++  L  C+ +Q +R +
Sbjct: 301 SIMFGL--CKAQQTDRAI 316



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 106/222 (47%), Gaps = 4/222 (1%)

Query: 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284
           H  + N +S    YN ++    K  K++ +    + ++   C  D  +YN ++T     G
Sbjct: 150 HGCTPNSLS----YNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDG 205

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
               A E+   +    CS    TY  +I  L+K G+ D A++L  EM+ +  +P    ++
Sbjct: 206 KVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYS 265

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           SL+  + + G+++ ++K + +++G G +P+A  Y S++    KA + D A+     M   
Sbjct: 266 SLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISK 325

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           G +P    +T++IE  A  G    A+ +  ++   G +   S
Sbjct: 326 GCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSS 367


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 150/336 (44%), Gaps = 4/336 (1%)

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM--EKGECSLDGSTYELMIPSLAKSGR 320
           D  C  +  SYN ++          +A ++ + M  E G CS D  ++  +I    K G 
Sbjct: 220 DLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGE 279

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           +  A  L  EM ++   P    + S+VD++ KA  +D +  V  +M   G  P    Y +
Sbjct: 280 VSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTA 339

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           +I  Y+ +G    + +++ +M   G  P    F   + S  K G+   A  IF  M   G
Sbjct: 340 IIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKG 399

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
            +P   +YS LL  +A+ G+      L++SM   G+      +  L++  AKR ++D A 
Sbjct: 400 HMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAM 459

Query: 501 KILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES- 558
            +  EM+  G   D V+ S ++  + + G +  A+     M S G+  N  +   L    
Sbjct: 460 LVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGF 519

Query: 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
           CM   L ++ + + E   +   + ++V ++S++  L
Sbjct: 520 CMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSL 555



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 111/533 (20%), Positives = 220/533 (41%), Gaps = 15/533 (2%)

Query: 124 GIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVI---NDSDTS 180
           G++   L  +A+         WK   ++  ++     +P +V     +  +     S  +
Sbjct: 329 GVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDA 388

Query: 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNR 240
             +F++   +  ++P    Y +L         F  M +LF  M   + K  ++    +N 
Sbjct: 389 EEIFQYMTTKG-HMPDLVSYSILLHGYATEGRFADMNNLFHSM---ADKGIVANCHCFNI 444

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           +I   AK   ++ +   F ++     + D  +Y+ L++ F   G    A E +  M    
Sbjct: 445 LISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIG 504

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF-RPSFNIFASLVDSMGKAGRLDTS 359
              +   Y  +I      G L  A +L  EM  +   RP+   F+S++ S+   GR+  +
Sbjct: 505 LEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDA 564

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
             V+  +   G RP+   + SLI+ Y   GK++ A  + D M   G  P+   +  ++  
Sbjct: 565 HDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSG 624

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + KSGK+D  + +F +M      PT  TYS +L+    +G+  +A K+++ M  +G    
Sbjct: 625 YCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVD 684

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLR 538
           + TY  LL  L +  L D A  +  ++  M    D++  + V+    K    + A     
Sbjct: 685 IDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFA 744

Query: 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
            + +SG+  N      +  + +K    E A  +  +  +S       L   ++  L++  
Sbjct: 745 AISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKG 804

Query: 599 DEQNERHLMAILSAT----KHKAHAFLCGLFTGPEQRKQPV--LSFVREFFHG 645
           D     + M+ +  T    +    + L  LF+   + ++ +  L    +FF+G
Sbjct: 805 DIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGKHREQIKFLPAKYQFFYG 857



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 149/358 (41%), Gaps = 2/358 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++N VI    K  ++  +     +++    + D  +YN ++          KA  +   M
Sbjct: 266 SFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQM 325

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
                  DG TY  +I   + SG    + K+F++M  +   P    F S + S+ K GR 
Sbjct: 326 VDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRS 385

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + +++  M   GH P    Y  L+  YA  G+      L+  M   G   N   F ++
Sbjct: 386 KDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNIL 445

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I +HAK G +D AM +FT+M+  G  P   TYS L+      G++  AM+ ++ M S GL
Sbjct: 446 ISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGL 505

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD--VSASDVLMVYIKDGSVDHAL 534
            P    Y +L+        +  A +++ EM + G      V  S ++     +G V  A 
Sbjct: 506 EPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAH 565

Query: 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
                +   G R        L +        E A  +L+  V    + D+V Y ++++
Sbjct: 566 DVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVS 623


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 156/333 (46%), Gaps = 4/333 (1%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKI-DTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           N V+  L    KL  +    +K+   +C++ +  +YN ++  ++ KG    A  I + ME
Sbjct: 234 NIVLNSLCTQGKLSKAESMLQKM--KNCRLPNAVTYNTILNWYVKKGRCKSALRILDDME 291

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K     D  TY +MI  L K  R   A  L + M+E N  P    + +L+      G+++
Sbjct: 292 KNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKIN 351

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ ++ +M     +PS   Y +LI+ Y + G+ D A R+  EM+I G RP+   ++ ++
Sbjct: 352 LAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALL 411

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + K  KL  A+ +   +         + Y+ L++     G+V  A ++   M + G+ 
Sbjct: 412 NGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGID 471

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHALRW 536
           P + TY+AL+  + K  ++    +IL  M+  G    +V  + ++  + K G    AL++
Sbjct: 472 PDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKY 531

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
              +  SG+  N+ I   L  S  +  +   A+
Sbjct: 532 FVDIYRSGLVANSVIHNALLCSFYREGMIAEAE 564



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/442 (21%), Positives = 188/442 (42%), Gaps = 14/442 (3%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           +I  AL  IN S+      + +  + + +    C ++L  +  +     G LS  + M+ 
Sbjct: 200 NILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQ-----GKLSKAESMLQ 254

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
                 +     YN ++ +  K  + + +      +  +  + D  +YN+++        
Sbjct: 255 KMKNCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKR 314

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             +A+ + + M +   + D  +Y  +I      G+++ AI +F +M  ++ +PS   + +
Sbjct: 315 SARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTA 374

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+D   + GR D + +V  EMQ  G RPS   Y +L+  Y K  KL  AL L   +R   
Sbjct: 375 LIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRS 434

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
              N  ++T++I+   + G++  A  I   M   G  P   TYS L+      G +    
Sbjct: 435 ISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETK 494

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-Y 524
           ++ + M  +G+ P    YT L+    K      A K  +++   G   +    + L+  +
Sbjct: 495 EILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSF 554

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVD 583
            ++G +  A ++ ++M    I  +      + +S C +  + E A  + +  V      D
Sbjct: 555 YREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLE-AFSVYDNMVRHGWPPD 613

Query: 584 LVLYTSVL------AHLVRCQD 599
           +  Y S+L       HLV+ ++
Sbjct: 614 ICTYGSLLRGLCQGGHLVQAKE 635



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 142/319 (44%), Gaps = 25/319 (7%)

Query: 194  VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLE 252
            VP    Y  L + L           +F E++    K G+ +   AYN ++    K  ++ 
Sbjct: 716  VPDTIAYTCLLNGLVNEGQVKAASYMFQEII---CKEGLYADCIAYNSMMNGYLKGGQIN 772

Query: 253  MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
                  + + +++    + SYN+LM  ++ KG   +   +Y  M K     D  TY L+I
Sbjct: 773  EIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLI 832

Query: 313  PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
              L + G ++ A+K  ++M      P    F  L+ +  +  ++  +++++         
Sbjct: 833  FGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLF--------- 883

Query: 373  PSAPMYVSLIESYAK-AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
                       SY K  G +D A  L ++M+  G  P+    + I+    K GK++ A+ 
Sbjct: 884  -----------SYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAII 932

Query: 432  IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
            +F+ + RAG +PT +T++ L+       ++D A  L   M S GL+  + TY  L+T L 
Sbjct: 933  VFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLC 992

Query: 492  KRKLVDVAAKILLEMKTMG 510
             +K +  A  +  EMK+ G
Sbjct: 993  NKKCICDALDLYEEMKSKG 1011



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 170/445 (38%), Gaps = 72/445 (16%)

Query: 223 MVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281
           ++ D  KNGI      YN +I  L K  +   +Y   K++ + +   D  SYN L+  F 
Sbjct: 286 ILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFF 345

Query: 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP--- 338
            +G    A  I+  M +       +TY  +I    ++GR D A ++  EM+    RP   
Sbjct: 346 GEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSEL 405

Query: 339 ------------------------------SFN--IFASLVDSMGKAGRLDTSMKVYMEM 366
                                         S N  ++  L+D   + G +  + ++   M
Sbjct: 406 TYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCM 465

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
              G  P    Y +LI    K G +     +   M+ +G  PN  L+T ++    K+G  
Sbjct: 466 LADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHA 525

Query: 427 DIAMSIFTDMERAGFLPTP-----------------------------------STYSCL 451
             A+  F D+ R+G +                                      ++++C+
Sbjct: 526 KEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCI 585

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++ +   G V  A  +Y++M   G  P + TY +LL  L +   +  A + ++ +     
Sbjct: 586 IDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKAC 645

Query: 512 SVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           ++D    + L+V I K G++D AL     M +  I  + +    L +   K      A  
Sbjct: 646 AIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALI 705

Query: 571 LLETYVESAAKVDLVLYTSVLAHLV 595
           LL+  +E     D + YT +L  LV
Sbjct: 706 LLQMMLEKGLVPDTIAYTCLLNGLV 730



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 161/354 (45%), Gaps = 21/354 (5%)

Query: 213  FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
             D  L L ++MV   ++N +     Y  ++    K  K+  +    + +L+     DT +
Sbjct: 665  LDEALDLCEKMV---TRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIA 721

Query: 273  YNVLMTLFLNKG-LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
            Y  L+   +N+G +   ++   E + K     D   Y  M+    K G+++   +L + M
Sbjct: 722  YTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNM 781

Query: 332  KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             E    PS   +  L+    K G+L  ++ +Y +M   G +P    Y  LI    + G +
Sbjct: 782  HENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLI 841

Query: 392  DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT----------------D 435
            + A++  ++M + G  P+   F ++I++ ++  K+  A+ +F+                D
Sbjct: 842  EIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKED 901

Query: 436  MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
            M+  G +P+    S ++      G+V+ A+ +++S+  AG+ P ++T+T L+  L K   
Sbjct: 902  MKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFK 961

Query: 496  VDVAAKILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTN 548
            +D A  +   M++ G  VDV   +VL+  + +   +  AL     M S G+  N
Sbjct: 962  IDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPN 1015



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 149/331 (45%), Gaps = 5/331 (1%)

Query: 214 DGMLSLFDEMVHDSSKNGISL-FSAYNRVI-QYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           +GM++  ++     S+  IS   +++N +I  Y  + + LE ++  +  ++      D  
Sbjct: 557 EGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLE-AFSVYDNMVRHGWPPDIC 615

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y  L+      G   +A E    + +  C++D  T   ++  + K G LD A+ L ++M
Sbjct: 616 TYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKM 675

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             RN  P    +  L+D   K G++  ++ +   M   G  P    Y  L+      G++
Sbjct: 676 VTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQV 735

Query: 392 DTALRLWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450
             A  ++ E+    G   +   +  ++  + K G+++    +  +M      P+ ++Y+ 
Sbjct: 736 KAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNI 795

Query: 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
           L+  +   GQ+   + LY  M   G++P   TY  L+  L +  L+++A K L +M   G
Sbjct: 796 LMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEG 855

Query: 511 YSVDVSASDVLM-VYIKDGSVDHALRWLRFM 540
              D  A D+L+  + +   + +AL+   +M
Sbjct: 856 VFPDNLAFDILIKAFSEKSKMSNALQLFSYM 886



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 119/281 (42%), Gaps = 17/281 (6%)

Query: 215  GMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
            G ++  + ++ +  +N +   SA YN ++    K  +L  +   ++ ++    K D  +Y
Sbjct: 769  GQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTY 828

Query: 274  NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS--------------- 318
             +L+      GL   A +  E M       D   ++++I + ++                
Sbjct: 829  RLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKW 888

Query: 319  -GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
             G +D A +L ++MK     PS    +S+V  + K G+++ ++ V+  +   G  P+   
Sbjct: 889  VGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIAT 948

Query: 378  YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
            + +L+    K  K+D A  L   M   G + +   + ++I        +  A+ ++ +M+
Sbjct: 949  FTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMK 1008

Query: 438  RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
              G LP  +TY  L     ++G +    KL   +   G+ P
Sbjct: 1009 SKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVP 1049



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 67/156 (42%)

Query: 289  AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
            AFE+ E M+             ++  L K G+++ AI +F  +      P+   F +L+ 
Sbjct: 895  AFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMH 954

Query: 349  SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
             + K  ++D +  +   M+ CG +     Y  LI        +  AL L++EM+  G  P
Sbjct: 955  GLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLP 1014

Query: 409  NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
            N   +  +  +   +G +     +  D+E  G +P+
Sbjct: 1015 NITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPS 1050



 Score = 42.4 bits (98), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 267  KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
            K+D  +YNVL+T   NK     A ++YE M+      + +TY  +  ++  +G +    K
Sbjct: 978  KVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEK 1037

Query: 327  LFQEMKERNFRPSFNIFASLVDSMGKA-GRLDT 358
            L +++++R   PS+    SL   M  A  RL+T
Sbjct: 1038 LLKDIEDRGIVPSYKHPESLEWRMENAIKRLNT 1070


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 13/342 (3%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADK-LE 252
           P  + Y+ +FD+L E       +  + EM     + GI     + N +I+ L K ++ +E
Sbjct: 118 PTQKSYLTVFDILVEENHVKRAIGFYKEM----REKGIPPTVVSLNILIKALCKNEETVE 173

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            ++  F+++ +  C+ D+ +Y  L+      G   +A E+ + ME+   S    +Y  +I
Sbjct: 174 SAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLI 233

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L +S  LD AI+L +EM      P+   ++SL+D + K+G    +M++   M      
Sbjct: 234 HGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLL 293

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P+   Y +LI    K GK   A+ + D MR+ G +P+ G++  II     +     A + 
Sbjct: 294 PNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANF 353

Query: 433 FTDMERAGFLPTPSTYSCLLEMH-----ASSGQVD--SAMKLYNSMTSAGLRPGLSTYTA 485
             +M   G  P  ++++  ++MH          VD   A +LY SM + G+   + T+  
Sbjct: 354 IDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDC 413

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
           L+    KR  ++ AA+IL EM   G   D    +VLM  + D
Sbjct: 414 LVKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLMCGLWD 455



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 144/308 (46%), Gaps = 9/308 (2%)

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNG-ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265
           +N+ R  +GML    +   + +++  +++   Y RV + L   D + +    F K+ D  
Sbjct: 63  VNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPL---DAIRV----FHKMEDFQ 115

Query: 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR-LDAA 324
            K   +SY  +  + + +    +A   Y+ M +        +  ++I +L K+   +++A
Sbjct: 116 VKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESA 175

Query: 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIES 384
            +LF+EM  R  +P    + +L++ + K G++  + ++  EM+  G  PS   Y SLI  
Sbjct: 176 FRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHG 235

Query: 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444
             ++  LD A+ L +EM I G  PN   ++ +++   KSG    AM +   M R   LP 
Sbjct: 236 LCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPN 295

Query: 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL 504
             TYS L+      G+   A+++ + M   GL+P    Y  +++ L        AA  + 
Sbjct: 296 MVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFID 355

Query: 505 EMKTMGYS 512
           EM   G S
Sbjct: 356 EMALGGIS 363



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 127/308 (41%), Gaps = 38/308 (12%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D +T+  MI  L    +   A  + + MK+ +   + ++F ++    G+  R   +++V+
Sbjct: 49  DHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVF 108

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +M+    +P+   Y+++ +   +   +  A+  + EMR  G  P      ++I++  K+
Sbjct: 109 HKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKN 168

Query: 424 GK-LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
            + ++ A  +F +M   G  P   TY  L+      G++  A +L + M   GL P + +
Sbjct: 169 EETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVS 228

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542
           YT+L+  L +                                    ++D A+  L  M  
Sbjct: 229 YTSLIHGLCQ----------------------------------SNNLDEAIELLEEMII 254

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQN 602
           +GI  N F    L +   K+     A  LLE  V      ++V Y++++  L +   E  
Sbjct: 255 NGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCK---EGK 311

Query: 603 ERHLMAIL 610
            R  + IL
Sbjct: 312 HREAVEIL 319


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/461 (21%), Positives = 190/461 (41%), Gaps = 56/461 (12%)

Query: 187 AKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV---------------------- 224
           A R S   P    Y  L     E+RD +G ++  +EM+                      
Sbjct: 156 AMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAG 215

Query: 225 -HDSSKNGISLFSA---------YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
            ++++++    F A         YN ++Q   +A  +E       ++ +   + +   Y 
Sbjct: 216 NNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYT 275

Query: 275 VLMTLFL-------------------NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315
            ++  F                      G   KA +I E M+K   S +   Y +++   
Sbjct: 276 TVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGY 335

Query: 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
           A+ G   AA K++++M     +P   I+  LV +  KAGR+D ++ V   ++     P+ 
Sbjct: 336 ARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTI 395

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
             Y S+++ Y K G +  AL ++D ++ AG RP    +  ++   AK+ +++ A  +  +
Sbjct: 396 ETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNE 455

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M   G +P+   Y+ L E +A +G V+ A  ++  M    L   +  Y ALL        
Sbjct: 456 MLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGA 515

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLM--VYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
           +  AA++  ++   G   +      ++   Y + G V+ A   +  M   G + +  I  
Sbjct: 516 MHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYN 575

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKV---DLVLYTSVL 591
            L  +   +  +E  + LL   V+S++K    D+  Y +++
Sbjct: 576 SLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLI 616



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 166/375 (44%), Gaps = 25/375 (6%)

Query: 249 DKLEMSYCCFKKVLDSDCKIDT---QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG 305
           + +E+    + K++++   ID    + Y +L+  +   G    A   +E+M       + 
Sbjct: 107 ETMEIDAGNWHKIVNAFQVIDKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNV 166

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
             Y  +I + A++  ++ A+   +EM  +  + +  +F S++     AG  + +   + +
Sbjct: 167 HIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEK 226

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA---- 421
            +     P   +Y S++++Y +AG ++T   L  +M   GF+ N GL+T ++   A    
Sbjct: 227 FKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRD 286

Query: 422 ---------------KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466
                          ++G +  A+ I  +M++ G  P    Y+ +++ +A  G   +A K
Sbjct: 287 EEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFK 346

Query: 467 LYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL--LEMKTMGYSVDVSASDVLMVY 524
           ++  M SAGL+P +  Y  L+    K   +D A  +L  +E   +  +++   S +L  Y
Sbjct: 347 VWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTS-ILDGY 405

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
           +K G++  AL     + ++G+R        L     K    E+A+ +L   + +      
Sbjct: 406 VKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSE 465

Query: 585 VLYTSVLAHLVRCQD 599
            +YT++     R  D
Sbjct: 466 RIYTALTEGYARTGD 480



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/370 (18%), Positives = 160/370 (43%), Gaps = 53/370 (14%)

Query: 157 KLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
           +L+  P+  ++ +AL ++ + D           +    P    Y M+ D      DF   
Sbjct: 296 RLKVSPQAGNMAKALDILEEMD-----------KHGVSPNKMIYAMIMDGYARGGDFTAA 344

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
             ++++MV    K  I +   YN ++    KA +++ +    + +  +      ++Y  +
Sbjct: 345 FKVWEDMVSAGLKPDIVI---YNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSI 401

Query: 277 MTLFLNKGLPYKAFEIYE-------------------------SMEKGECSLDGSTYELM 311
           +  ++  G   KA E+++                          ME     L+      +
Sbjct: 402 LDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGV 461

Query: 312 IPS----------LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           +PS           A++G ++ A  +FQ MK+ N       + +L+ +   +G +  + +
Sbjct: 462 VPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAE 521

Query: 362 VYMEMQGCGHRPSAPMYVSLIE-SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           V+ ++   G + +   Y ++++ +YA+AG+++ A  L   M   G +P+  ++  +I ++
Sbjct: 522 VFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAY 581

Query: 421 AKSGKLDIAMSIFTDMERAG---FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             SG+ +   ++   M ++      P   TY+ L++++A +G +  A +L+  +    L 
Sbjct: 582 GVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLV 641

Query: 478 PGLSTYTALL 487
           P  +T+TAL+
Sbjct: 642 PDATTWTALM 651



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 123/297 (41%), Gaps = 20/297 (6%)

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E G+CS + +           +G     +  FQ +     +P    +  LVD   + G  
Sbjct: 92  EYGDCSDEPAAQRFRETMEIDAGNWHKIVNAFQVID----KPVLREYGLLVDFYARHGDK 147

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +   +  M+    +P+  +Y SLI +YA+A  ++ A+   +EM   G + N  +F  I
Sbjct: 148 VAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSI 207

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I  +A +G  + A   F   +    +P    Y+ +++ +  +G +++   L   M   G 
Sbjct: 208 ISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGF 267

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
           +  L  YT +L            A+I  E K + +         L V  + G++  AL  
Sbjct: 268 QGNLGLYTTVLNGF---------AEIRDEEKCLSF------FHRLKVSPQAGNMAKALDI 312

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593
           L  M   G+  N  I   + +   +   + +A  + E  V +  K D+V+Y ++L H
Sbjct: 313 LEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIY-NILVH 368



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 71/160 (44%), Gaps = 1/160 (0%)

Query: 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502
           P    Y  L++ +A  G   +A   + +M ++ ++P +  YT+L+   A+ + ++ A   
Sbjct: 129 PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVAC 188

Query: 503 LLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561
             EM + G  ++ +    ++  Y   G+ + A  W     +  +     +   + ++  +
Sbjct: 189 TEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQ 248

Query: 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
               E+ + LL    E   + +L LYT+VL      +DE+
Sbjct: 249 AGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEE 288


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 145/329 (44%), Gaps = 4/329 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L + D MV +     +     YN V+  L K  +LE +     +++D  C  D  ++N L
Sbjct: 214 LKVMDVMVQEGHDPDVF---TYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 270

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           +          +A ++   +     S D  T+ ++I +L K G    A++LF+EMK    
Sbjct: 271 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 330

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + +L+D++   G+L  ++ +  +M+  G   S   Y ++I+   K  +++ A  
Sbjct: 331 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 390

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++D+M + G   N   F  +I+   K  K+D A  +   M   G  P   TY+ +L  + 
Sbjct: 391 VFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYC 450

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
             G +  A  +  +MT+ G    + TY  L+  L K     VA K+L  M+  G      
Sbjct: 451 KQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPK 510

Query: 517 ASD-VLMVYIKDGSVDHALRWLRFMGSSG 544
           A + VL    +  ++  AL   R M   G
Sbjct: 511 AYNPVLQSLFRRNNIRDALSLFREMAEVG 539



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 154/349 (44%), Gaps = 14/349 (4%)

Query: 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH 225
           H+  ALKV++              Q  + P    Y ++ + L ++   +    + ++MV 
Sbjct: 209 HVGHALKVMD-----------VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVD 257

Query: 226 DSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL 285
                 I+ F   N +I  L   ++LE +    ++V       D  ++N+L+      G 
Sbjct: 258 RGCLPDITTF---NTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGD 314

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           P+ A  ++E M+   C+ D  TY  +I +L   G+L  A+ L ++M+      S   + +
Sbjct: 315 PHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNT 374

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           ++D + K  R++ + +V+ +M   G   +A  + +LI+   K  K+D A  L ++M   G
Sbjct: 375 IIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEG 434

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
            +PN   +  I+  + K G +  A  I   M   GF     TY  L+     +G+   A+
Sbjct: 435 LQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVAL 494

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           K+   M   G+RP    Y  +L  L +R  +  A  +  EM  +G   D
Sbjct: 495 KVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPD 543



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 147/364 (40%), Gaps = 36/364 (9%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN  +           A ++ + M +     D  TY +++  L K+G+L+ A  + 
Sbjct: 193 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 252

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            +M +R   P    F +L+ ++    RL+ ++ +  ++   G  P    +  LI +  K 
Sbjct: 253 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKV 312

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G    ALRL++EM+ +G  P+   +  +I++    GKL  A+ +  DME  G   +  TY
Sbjct: 313 GDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 372

Query: 449 -----------------------------------SCLLEMHASSGQVDSAMKLYNSMTS 473
                                              + L++      ++D A +L N M S
Sbjct: 373 NTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMIS 432

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDH 532
            GL+P   TY ++LT   K+  +  AA IL  M   G+ VDV     L+  + K G    
Sbjct: 433 EGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQV 492

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           AL+ LR M   G+R        + +S  +      A  L     E     D + Y  V  
Sbjct: 493 ALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFR 552

Query: 593 HLVR 596
            L R
Sbjct: 553 GLCR 556



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 1/276 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I  L K     ++   F+++ +S C  D  +YN L+    + G   KA ++ + M
Sbjct: 301 TFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 360

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E   C     TY  +I  L K  R++ A ++F +M  +    +   F +L+D + K  ++
Sbjct: 361 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 420

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + ++  +M   G +P+   Y S++  Y K G +  A  + + M   GF  +   +  +
Sbjct: 421 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 480

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    K+G+  +A+ +   M   G  PTP  Y+ +L+       +  A+ L+  M   G 
Sbjct: 481 INGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGE 540

Query: 477 RPGLSTYTALLTLLAK-RKLVDVAAKILLEMKTMGY 511
            P   TY  +   L +    +  A   +LEM   G+
Sbjct: 541 PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF 576



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/438 (20%), Positives = 175/438 (39%), Gaps = 39/438 (8%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  L +VL E      + S++ EM     K  +  F   N +++ L +A ++  +    +
Sbjct: 57  YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTF---NTLMKALCRAHQVRTAVLMLE 113

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
           ++       D  ++  LM  F+ +G    A  +   M +  CS    T  ++I    K G
Sbjct: 114 EMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLG 173

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           R++ A+   Q+     F P    + + V+ + +   +  ++KV   M   GH P    Y 
Sbjct: 174 RVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 233

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
            ++    K G+L+ A  + ++M   G  P+   F  +I +     +L+ A+ +   +   
Sbjct: 234 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 293

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL------------ 487
           G  P   T++ L+      G    A++L+  M ++G  P   TY  L+            
Sbjct: 294 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 353

Query: 488 ---------------TL--------LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524
                          T+        L K+  ++ A ++  +M   G S +    + L+  
Sbjct: 354 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 413

Query: 525 I-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD 583
           + KD  +D A   +  M S G++ NN     +     K    + A  +LET   +  +VD
Sbjct: 414 LCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 473

Query: 584 LVLYTSVLAHLVRCQDEQ 601
           +V Y +++  L +    Q
Sbjct: 474 VVTYGTLINGLCKAGRTQ 491



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 139/332 (41%), Gaps = 3/332 (0%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           + DT  YN L+ + + +G   K  E +Y  M       D  T+  ++ +L ++ ++  A+
Sbjct: 51  QADTVVYNHLLNVLV-EGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAV 109

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
            + +EM  R   P    F +L+    + G ++ +++V   M   G   +      LI  Y
Sbjct: 110 LMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGY 169

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
            K G+++ AL    +    GF P+   +   +    ++  +  A+ +   M + G  P  
Sbjct: 170 CKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 229

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ ++     +GQ++ A  + N M   G  P ++T+  L+  L     ++ A  +  +
Sbjct: 230 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 289

Query: 506 MKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564
           +   G S DV   ++L+    K G    ALR    M +SG   +      L ++      
Sbjct: 290 VTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK 349

Query: 565 YESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
              A  LL+    +      + Y +++  L +
Sbjct: 350 LGKALDLLKDMESTGCPRSTITYNTIIDGLCK 381



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 6/230 (2%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEM-VHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  + D L +    +    +FD+M +   S+N I+    +N +I  L K  K++ ++   
Sbjct: 372 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT----FNTLIDGLCKDKKIDDAFELI 427

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            +++    + +  +YN ++T +  +G   KA +I E+M      +D  TY  +I  L K+
Sbjct: 428 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 487

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           GR   A+K+ + M+ +  RP+   +  ++ S+ +   +  ++ ++ EM   G  P A  Y
Sbjct: 488 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTY 547

Query: 379 VSLIESYAKAGK-LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             +     + G  +  A     EM   GF P F  F M+ E     G  D
Sbjct: 548 KIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDD 597



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 115/306 (37%), Gaps = 40/306 (13%)

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA--GFLPTPSTYSCLLEM 454
           L  EMR  G +   G+    ++S+      D A+ +  +  +   G       Y+ LL +
Sbjct: 4   LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNV 63

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
                ++     +Y+ M + G++P + T+  L+  L +   V  A  +L EM + G + D
Sbjct: 64  LVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPD 123

Query: 515 VSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            +    LM  ++++GS++ ALR    M   G       V  L     K    E A   ++
Sbjct: 124 ETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQ 183

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQ 633
             +    + D + Y + +  L  CQ++              H  HA              
Sbjct: 184 QEIADGFEPDQITYNTFVNGL--CQND--------------HVGHAL------------- 214

Query: 634 PVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIV 693
            V+  + +  H  D         +  N+++N L   GQ+  A+ +     +    P    
Sbjct: 215 KVMDVMVQEGHDPDV--------FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITT 266

Query: 694 FDQHIA 699
           F+  IA
Sbjct: 267 FNTLIA 272


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 133/299 (44%), Gaps = 3/299 (1%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  L D L    D D  + L DEM+       +  F+    +++   K   L M
Sbjct: 362 VPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTI---LVRGFCKLGNLPM 418

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
           +   F ++L+   + D  +Y   +   L  G P KAF + E M       D  TY + I 
Sbjct: 419 AKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFID 478

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
            L K G L  A +L ++M      P    + S++ +   AG L  +  V++EM   G  P
Sbjct: 479 GLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFP 538

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
           S   Y  LI SYA  G+L  A+  + EM   G  PN   +  +I    K  K+D A   F
Sbjct: 539 SVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFF 598

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           T+M+  G  P   TY+ L+  + + G    A++LY  M    ++P   T++ALL  L K
Sbjct: 599 TEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHLNK 657



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 171/376 (45%), Gaps = 6/376 (1%)

Query: 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY 238
            +L  FRWA+RQ+ +   +  Y ++ D+L  +        + +++V    +NG+      
Sbjct: 63  VALRFFRWAERQTGFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLIL 122

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-AFEIYESME 297
           + ++   AK   LE     F K++      D ++ N ++ L  ++      A E+Y  M 
Sbjct: 123 DLLLWIYAKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMV 182

Query: 298 KGECSLDGS--TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
             EC +  +  TY  M+ S  K G++  A++L  +M++    P+   +  LV+ +  +G 
Sbjct: 183 --ECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGE 240

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           L+ + ++  EM   G   SA  Y  LI  Y + G+LD A RL +EM   G  P    +  
Sbjct: 241 LEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNT 300

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           I+    K G++  A  +   M     +P   +Y+ L+  +   G +  A  L+  +   G
Sbjct: 301 IMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRG 360

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHAL 534
           L P + TY  L+  L +   +DVA ++  EM   G   DV    +L+  + K G++  A 
Sbjct: 361 LVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAK 420

Query: 535 RWLRFMGSSGIRTNNF 550
                M + G++ + F
Sbjct: 421 ELFDEMLNRGLQPDRF 436



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 171/405 (42%), Gaps = 4/405 (0%)

Query: 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           E    D    L +EM+   S+  +     YN ++  L K  ++  +      +++ +   
Sbjct: 272 EKGQLDEASRLGEEML---SRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMP 328

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  SYN L+  +   G   +AF ++  +          TY  +I  L + G LD A++L 
Sbjct: 329 DLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLK 388

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EM +    P    F  LV    K G L  + +++ EM   G +P    Y++ I    K 
Sbjct: 389 DEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKL 448

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G    A  + +EM   GF P+   + + I+   K G L  A  +   M   G +P   TY
Sbjct: 449 GDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTY 508

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + ++  H  +G +  A  ++  M S G+ P + TYT L+   A R  + +A     EM  
Sbjct: 509 TSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHE 568

Query: 509 MGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   +V   + L+  + K   +D A ++   M + GI  N +    L         ++ 
Sbjct: 569 KGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQE 628

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612
           A  L +  ++   + D   ++++L HL +       RHL  +++A
Sbjct: 629 ALRLYKDMLDREIQPDSCTHSALLKHLNKDYKSHVVRHLENVIAA 673


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 171/391 (43%), Gaps = 4/391 (1%)

Query: 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           +L D    + D D  ++L D M +   K GI  F   N V++ L K  + + +   F+ +
Sbjct: 197 VLIDARFRAGDVDAAIALVDSMANKGLKPGIVTF---NSVLKGLCKHRRFDKAKEVFRAM 253

Query: 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL 321
                  D +S+N+L+  F   G   +A + Y+ M++   + D  ++  +I   +  G++
Sbjct: 254 DQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKM 313

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           D A    +EMK     P   I+  ++    +AG +  +++V  EM G G  P    Y +L
Sbjct: 314 DHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTL 373

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           +    K  +L  A  L +EM+  G  P+   FT +I  + + G  + A+ +F  +     
Sbjct: 374 LNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRL 433

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P    Y+ L++     G +  A +L++ M +  + P   TY+ L+    ++  V+ A  
Sbjct: 434 RPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFG 493

Query: 502 ILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
            L EM + G   ++ + + ++  Y + G+V    ++L+ M    I  +      L    +
Sbjct: 494 FLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYI 553

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           K      A  +     +   + D V Y  ++
Sbjct: 554 KEENMHGAFNVFNIMEKEMVQPDAVTYNMII 584



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 142/280 (50%), Gaps = 3/280 (1%)

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLA 316
           ++ VL SD +++  + N+++  +  K L + KA  +   MEK     D  T+ ++I +  
Sbjct: 145 YRLVLSSDSEVNAYTLNIMVHSYC-KSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARF 203

Query: 317 KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP 376
           ++G +DAAI L   M  +  +P    F S++  + K  R D + +V+  M  C   P   
Sbjct: 204 RAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVR 263

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            +  LI  + + G+++ A++ + EM+  G  P+   F+ +I   +  GK+D A +   +M
Sbjct: 264 SFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREM 323

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
           +  G +P    Y+ ++     +G +  A+++ + M   G  P + TY  LL  L K+  +
Sbjct: 324 KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRL 383

Query: 497 DVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
             A ++L EMK  G + D+   + ++  Y +DG+ + AL+
Sbjct: 384 LDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQ 423



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 130/283 (45%), Gaps = 1/283 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   Y +++  F   G   +A  + + M    C  D  TY  ++  L K  RL  A +L 
Sbjct: 331 DGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELL 390

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            EMKER   P    F +L+    + G  + +++++  +     RP    Y SLI+   + 
Sbjct: 391 NEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRK 450

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G L  A  LWD+M      PN   ++++I+SH + G+++ A     +M   G LP   TY
Sbjct: 451 GDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTY 510

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM-K 507
           + +++ +  SG V    +    M    + P L T+  L+    K + +  A  +   M K
Sbjct: 511 NSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEK 570

Query: 508 TMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550
            M     V+ + ++  + + G+++ A R  + MG+SGI  + +
Sbjct: 571 EMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRY 613



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 160/363 (44%), Gaps = 1/363 (0%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           ++ +I+   ++ K   ++  F+ +LD    +   + N L+      G P+ A E Y  + 
Sbjct: 90  FDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAEEAYRLVL 149

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
             +  ++  T  +M+ S  KS   D A  +  EM++R   P       L+D+  +AG +D
Sbjct: 150 SSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVD 209

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            ++ +   M   G +P    + S+++   K  + D A  ++  M      P+   F ++I
Sbjct: 210 AAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILI 269

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
               + G+++ AM  + +M++ G  P   ++SCL+ + ++ G++D A      M   GL 
Sbjct: 270 GGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLV 329

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P    YT ++    +   +  A ++  EM  +G   DV   + L+  + K   +  A   
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEEL 389

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M   G+  +      L     ++  +E A  L +T +    + D+V Y S++  + R
Sbjct: 390 LNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCR 449

Query: 597 CQD 599
             D
Sbjct: 450 KGD 452



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 121/277 (43%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  VI    +A  +  +     +++   C  D  +YN L+     +     A E+   M+
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMK 394

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +   + D  T+  +I    + G  + A++LF  +  +  RP    + SL+D M + G L 
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLA 454

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + +++ +M      P+   Y  LI+S+ + G+++ A    DEM   G  PN   +  II
Sbjct: 455 KANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSII 514

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           + + +SG +         M +   LP   T++ L+  +     +  A  ++N M    ++
Sbjct: 515 KGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQ 574

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           P   TY  ++   +++  ++ A ++  +M   G   D
Sbjct: 575 PDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPD 611



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 138/324 (42%), Gaps = 9/324 (2%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS---AYNRVIQYLAKADK 250
           VP    Y M+      +      L + DEMV      G+        YN ++  L K  +
Sbjct: 329 VPDGVIYTMVIGGFCRAGSMSEALRVRDEMV------GLGCLPDVVTYNTLLNGLCKQHR 382

Query: 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL 310
           L  +     ++ +     D  ++  L+  +   G   KA ++++++       D   Y  
Sbjct: 383 LLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNS 442

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +I  + + G L  A +L+ +M  R   P+   ++ L+DS  + G+++ +     EM   G
Sbjct: 443 LIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKG 502

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
           + P+   Y S+I+ Y ++G +    +   +M      P+   F  +I  + K   +  A 
Sbjct: 503 NLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAF 562

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
           ++F  ME+    P   TY+ ++   +  G ++ A +++  M ++G+ P   TY +L+   
Sbjct: 563 NVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGH 622

Query: 491 AKRKLVDVAAKILLEMKTMGYSVD 514
                   A ++  EM   G++ D
Sbjct: 623 VTAGNSKEAFQLHDEMMHRGFAPD 646


>gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 4/299 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L D        +    L DE+V    K  +     YN +I +L+    +E +
Sbjct: 269 PNVRTYATLVDGYTRVGSLENAFRLCDELVE---KGLLPNSVIYNSIIHWLSMEGDMEGA 325

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
                 ++D     D  +Y++++      G   +AF+  + + +     D  ++ ++I  
Sbjct: 326 SLLLSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINY 385

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L +S  L  A +L   M  R   P    F +L+D   K G+++ +++VY +M   G +P+
Sbjct: 386 LCRSNNLAGAKQLLANMYVRGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPN 445

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
             +Y S+I  +AK G  D A+ L D +R  G   +   +  +I  +   GK+D A ++F+
Sbjct: 446 LLIYNSVINGFAKEGSFDPAILLIDTLRRMGLF-DVVTYNTLIHGYCNCGKIDQAFALFS 504

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493
           +M  +G L +  TY+ L+     +G V  A +L   M   GL P   TYT L+T  +K+
Sbjct: 505 EMRNSGILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITSFSKK 563



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 179/430 (41%), Gaps = 42/430 (9%)

Query: 211 RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT 270
            D +    ++ EMV   S   I   + +N +I  L K  +L  +     + L +    + 
Sbjct: 142 NDVNRFWKMYKEMV---SYGYIENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNV 198

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESME-KGECSL--DGSTYELMIPSLAKSGRLDAAIKL 327
            ++N+++   +  G    A ++   ME    CS+  D  TY   +    K G L  A + 
Sbjct: 199 VTFNMIIDGAIKMGAMDLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEF 258

Query: 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387
            +EM  +   P+   +A+LVD   + G L+ + ++  E+   G  P++ +Y S+I   + 
Sbjct: 259 KKEMLGKEIEPNVRTYATLVDGYTRVGSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSM 318

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA---------MSIFTD--- 435
            G ++ A  L  +M      P+   ++++IE   ++G L+ A         MS+  D   
Sbjct: 319 EGDMEGASLLLSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFS 378

Query: 436 -----------------------MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
                                  M   G +P   T+  L++ H   G+V++A+++Y  M 
Sbjct: 379 HNVVINYLCRSNNLAGAKQLLANMYVRGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMI 438

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDH 532
             G +P L  Y +++   AK    D A  ++  ++ MG    V+ + ++  Y   G +D 
Sbjct: 439 KTGEKPNLLIYNSVINGFAKEGSFDPAILLIDTLRRMGLFDVVTYNTLIHGYCNCGKIDQ 498

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A      M +SGI  ++     L  S  K      AK L++  V      D V YT ++ 
Sbjct: 499 AFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILIT 558

Query: 593 HLV-RCQDEQ 601
               +C  E+
Sbjct: 559 SFSKKCSPEE 568



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 165/366 (45%), Gaps = 7/366 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE-IYES 295
           A+N  + +L K + +   +  +K+++      +  ++N+++     +G   +A   IY S
Sbjct: 130 AWNNFLSHLLKLNDVNRFWKMYKEMVSYGYIENVNTFNLIIYALGKEGRLVEAVSVIYRS 189

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN---FRPSFNIFASLVDSMGK 352
           ++ G    +  T+ ++I    K G +D A+KL ++M+  +    +P    + S V+   K
Sbjct: 190 LKTGIWP-NVVTFNMIIDGAIKMGAMDLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCK 248

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G L  + +   EM G    P+   Y +L++ Y + G L+ A RL DE+   G  PN  +
Sbjct: 249 IGNLAVAEEFKKEMLGKEIEPNVRTYATLVDGYTRVGSLENAFRLCDELVEKGLLPNSVI 308

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +  II   +  G ++ A  + +DM      P   TYS ++E    +G ++ A K    + 
Sbjct: 309 YNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMIL 368

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
              L     ++  ++  L +   +  A ++L  M   G   DV     L+  + KDG V+
Sbjct: 369 EMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYVRGLVPDVVTFGTLIDRHCKDGKVE 428

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
           +A++    M  +G + N  I   +     K   ++ A  L++T +      D+V Y +++
Sbjct: 429 NAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAILLIDT-LRRMGLFDVVTYNTLI 487

Query: 592 AHLVRC 597
                C
Sbjct: 488 HGYCNC 493



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 88/456 (19%), Positives = 176/456 (38%), Gaps = 60/456 (13%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           N    +L    W   +   +   E   ++  VL  S+ +D  L +   +++    NGIS 
Sbjct: 19  NSPQLALEFHDWVLEKKSVLHSIESCCVVIHVLVNSKRYDDALFIMGNLMN---VNGIS- 74

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
                     L   D L  SY          CK     ++ L+      G    A+E+  
Sbjct: 75  ---------PLEVLDALISSY--------DICKSSPAVFDALVRTCTQIGATEGAYEVIT 117

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            ++     +    +   +  L K   ++   K+++EM    +  + N F  ++ ++GK G
Sbjct: 118 KLQLDGFWVTVHAWNNFLSHLLKLNDVNRFWKMYKEMVSYGYIENVNTFNLIIYALGKEG 177

Query: 355 RL-----------------------------------DTSMKVYMEMQ---GCGHRPSAP 376
           RL                                   D ++K+  +M+   GC  +P + 
Sbjct: 178 RLVEAVSVIYRSLKTGIWPNVVTFNMIIDGAIKMGAMDLALKLVRKMEVMSGCSVKPDSV 237

Query: 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436
            Y S +  + K G L  A     EM      PN   +  +++ + + G L+ A  +  ++
Sbjct: 238 TYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTYATLVDGYTRVGSLENAFRLCDEL 297

Query: 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496
              G LP    Y+ ++   +  G ++ A  L + M    + P   TY+ ++  L +   +
Sbjct: 298 VEKGLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVIEGLCRNGYL 357

Query: 497 DVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQL 555
           + A K L  +  M    D  + +V++ Y+ +  ++  A + L  M   G+  +      L
Sbjct: 358 NEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYVRGLVPDVVTFGTL 417

Query: 556 FESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            +   K+   E+A  + E  +++  K +L++Y SV+
Sbjct: 418 IDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVI 453



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/312 (18%), Positives = 127/312 (40%), Gaps = 4/312 (1%)

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
           C    + ++ ++ +  + G  + A ++  +++   F  + + + + +  + K   ++   
Sbjct: 89  CKSSPAVFDALVRTCTQIGATEGAYEVITKLQLDGFWVTVHAWNNFLSHLLKLNDVNRFW 148

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           K+Y EM   G+  +   +  +I +  K G+L  A+ +       G  PN   F MII+  
Sbjct: 149 KMYKEMVSYGYIENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDGA 208

Query: 421 AKSGKLDIAMSIFTDME---RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            K G +D+A+ +   ME        P   TY+  +      G +  A +    M    + 
Sbjct: 209 IKMGAMDLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIE 268

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK-DGSVDHALRW 536
           P + TY  L+    +   ++ A ++  E+   G   +    + ++ ++  +G ++ A   
Sbjct: 269 PNVRTYATLVDGYTRVGSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLL 328

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           L  M    I  + F    + E   +N     A   L+  +E +   D   +  V+ +L R
Sbjct: 329 LSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCR 388

Query: 597 CQDEQNERHLMA 608
             +    + L+A
Sbjct: 389 SNNLAGAKQLLA 400



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 141/364 (38%), Gaps = 45/364 (12%)

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
           +F +LV +  + G  + + +V  ++Q  G   +   + + +    K   ++   +++ EM
Sbjct: 95  VFDALVRTCTQIGATEGAYEVITKLQLDGFWVTVHAWNNFLSHLLKLNDVNRFWKMYKEM 154

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
              G+  N   F +II +  K G+L  A+S+     + G  P   T++ +++     G +
Sbjct: 155 VSYGYIENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDGAIKMGAM 214

Query: 462 DSAMKLYNSM---TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           D A+KL   M   +   ++P   TY + +    K   + VA +   EM       +V   
Sbjct: 215 DLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTY 274

Query: 519 DVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
             L+  Y + GS+++A R    +   G+  N+ I   +          E A  LL   ++
Sbjct: 275 ATLVDGYTRVGSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMID 334

Query: 578 SAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLS 637
                D   Y+ V+  L R              +   ++A  FL  +           +S
Sbjct: 335 KRIYPDQFTYSIVIEGLCR--------------NGYLNEAFKFLQMILE---------MS 371

Query: 638 FVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVF--- 694
            VR+ F                NV++NYL     +  A+ +    Y   L P  + F   
Sbjct: 372 LVRDAFSH--------------NVVINYLCRSNNLAGAKQLLANMYVRGLVPDVVTFGTL 417

Query: 695 -DQH 697
            D+H
Sbjct: 418 IDRH 421


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 190/427 (44%), Gaps = 7/427 (1%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVM--LFDVLNESRDFDGMLSLFDEMVHDSSKNG 231
           I+D    L+ F WA +QS      + +V   L  +L   R F  + +L + M    SK  
Sbjct: 71  IHDPRLGLNFFEWASKQSTLSNSLDGFVCSSLLKLLARFRVFKEIENLLETM---KSKEL 127

Query: 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD-SDCKIDTQSYNVLMTLFLNKGLPYKAF 290
           I    A + VI   A +  ++ +   +  V+D  +C  D  + N L+ L ++ G    A 
Sbjct: 128 IPTCEALSFVISAYAGSGLVKEALELYNTVIDVHNCVPDVFACNSLLNLLVHHGKVEIAR 187

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           ++Y+ M      +D  T  ++   L K G+++    L ++   +   P+   + +L+D  
Sbjct: 188 KVYDEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGY 247

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K G ++ +  ++ E++  G  P+   Y ++I ++ K GK +   +L  EM+  G   + 
Sbjct: 248 CKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSL 307

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470
            +F  II++  K G    A      M  +G  P  +TY+ L+    S G+V  A +L   
Sbjct: 308 QIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEH 367

Query: 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGS 529
               GL P   +YT L+   +K      A+++L+EM   G+++D+ A   L+   +  G 
Sbjct: 368 AIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGE 427

Query: 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589
           VD AL     M   GI  +  I   L     K   + +AK LL   ++     D  +  +
Sbjct: 428 VDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNAT 487

Query: 590 VLAHLVR 596
           ++   +R
Sbjct: 488 LVDGFIR 494



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 123/281 (43%), Gaps = 1/281 (0%)

Query: 222 EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           E++ + S+ G +L   AY  ++  L  A +++++     K+++     D   YNVLM+  
Sbjct: 398 ELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGL 457

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
             KG    A ++   M     + D      ++    + G LD A KLFQ   ER    S 
Sbjct: 458 CKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSV 517

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
               +++    K G ++ ++  +  M    H P    Y ++I+ Y K   L  ALR++  
Sbjct: 518 VECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGL 577

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M     +PN   FT +I    ++G L+ A  +F +M   GF P   TY+ L+      G+
Sbjct: 578 MLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGK 637

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
           +  A   +  M      P  +T+  L+  L     + +++K
Sbjct: 638 LTKACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSK 678



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/413 (20%), Positives = 158/413 (38%), Gaps = 7/413 (1%)

Query: 185 RWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244
           RW K     VP    Y  L D   ++ D +    LF E+     K  +     Y  +I  
Sbjct: 228 RWGK---GCVPNIVFYNTLIDGYCKNGDIERANLLFKEL---KVKGFLPTVKTYGAMINA 281

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
             K  K E       ++ +    +  Q +N ++      G   +A +    M +  C  D
Sbjct: 282 FCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPD 341

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
            +TY  +I      G++  A +L +    R   P+   +  L+ +  K G    + ++ +
Sbjct: 342 MATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLI 401

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
           EM   GH      Y +L+     AG++D AL + D+M   G  P+  ++ +++    K G
Sbjct: 402 EMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKG 461

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
           +   A  +  +M      P     + L++     G +D A KL+      G+   +    
Sbjct: 462 RFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECN 521

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSS 543
           A++    K  +++ A      M    +S D  + S ++  Y+K   +  ALR    M   
Sbjct: 522 AMIKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKK 581

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             + N      L     +N     A+ + E       + ++V YT ++ +  +
Sbjct: 582 TCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCK 634


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 168/365 (46%), Gaps = 7/365 (1%)

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI 242
            F WA +Q  YV     Y  + + L + R +  +  L + M +    N      A+  ++
Sbjct: 42  FFEWASKQRNYVHSVRAYHSMIESLAKIRQYQMVWDLVNAMRNKEILN----VEAFCIIM 97

Query: 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS 302
           +  A+A K+E +   F  +   + K +  ++N L++         KA EI+++M K +  
Sbjct: 98  RKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNM-KDQFV 156

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362
            D  TY ++I    ++  L  A ++++EM +    P    ++ +VD + KAGR+D ++++
Sbjct: 157 PDSKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEI 216

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
             EM     +PS+ +Y  L+ +Y    +++ A+  + EM   G   +   +  +I +  K
Sbjct: 217 VKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCK 276

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST 482
           + K+     +  DM+  G  P   T + ++      G+ D A K++  M      P + +
Sbjct: 277 ANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKV-CEPDVDS 335

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMG 541
           YT ++ +   RK +D+A KI   MK   +   +    VL+  + + G+   A   L  M 
Sbjct: 336 YTMIIKMFCGRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMI 395

Query: 542 SSGIR 546
             GIR
Sbjct: 396 EKGIR 400



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 117/255 (45%), Gaps = 7/255 (2%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
            Y  MI SLAK  +      L   M+ +    +   F  ++    +A +++ ++  +  M
Sbjct: 58  AYHSMIESLAKIRQYQMVWDLVNAMRNKEIL-NVEAFCIIMRKYARAQKVEEAVYTFNVM 116

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +    +P+   +  L+ +  K+  +  A  ++D M+   F P+   ++++IE   ++  L
Sbjct: 117 EKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMK-DQFVPDSKTYSILIEGWGRAPNL 175

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A  I+ +M  +G +P   TYS ++++   +G+VD A+++   M     +P    Y+ L
Sbjct: 176 PKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVL 235

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGI 545
           +        ++ A    LEM+  G   DV+A + L+  + K   + +  R L+ M   G+
Sbjct: 236 VHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGV 295

Query: 546 ----RTNNFIVRQLF 556
               RT N I+  L 
Sbjct: 296 NPNSRTCNIIINSLI 310



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 120/271 (44%), Gaps = 6/271 (2%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           +VP  + Y +L +    + +      ++ EM+       I     Y+ ++  L KA +++
Sbjct: 155 FVPDSKTYSILIEGWGRAPNLPKAREIYREMIDSGC---IPDEVTYSIMVDVLCKAGRVD 211

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +    K++  ++CK  +  Y+VL+  +  +     A   +  ME+     D + Y  +I
Sbjct: 212 EAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALI 271

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGH 371
            +  K+ ++    ++ ++M  +   P+      +++S+   G  D + K++  M + C  
Sbjct: 272 SAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKVC-- 329

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P    Y  +I+ +    +LD AL++W  M+   F P+   F+++I    + G    A  
Sbjct: 330 EPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACV 389

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
           +  +M   G  P+ +T+  L  +    G+ D
Sbjct: 390 LLEEMIEKGIRPSGATFGRLRHLLIKEGRKD 420



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 6/215 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEM 253
           P    Y +L          +  +S F EM     +NG+ +  +AYN +I    KA+K++ 
Sbjct: 227 PSSFIYSVLVHTYGVENRIEDAVSTFLEM----ERNGVMADVAAYNALISAFCKANKMKN 282

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313
            Y   K +       ++++ N+++   + +G   +AF+I+  M K  C  D  +Y ++I 
Sbjct: 283 VYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKV-CEPDVDSYTMIIK 341

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373
                  LD A+K+++ MK++ F PS + F+ L++ + + G    +  +  EM   G RP
Sbjct: 342 MFCGRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRP 401

Query: 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
           S   +  L     K G+ D    L ++M +    P
Sbjct: 402 SGATFGRLRHLLIKEGRKDVLKFLQEKMNLLVKEP 436


>gi|297820862|ref|XP_002878314.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324152|gb|EFH54573.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 475

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 161/368 (43%), Gaps = 8/368 (2%)

Query: 150 ELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFR---WAKRQSWYVPGDECYVMLFDV 206
           EL  ++  L     +V I + L   N +  +   +R   W+  Q  +      Y +L  +
Sbjct: 101 ELNVRVSGLLVREVLVGILRNLSYDNKTRCARLAYRFFVWSGEQDCFRHTVNSYHLLMKI 160

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
             E  ++  M  L DEMV D        F   N +I    +A   + +   F K    + 
Sbjct: 161 FAECGEYKAMWRLVDEMVQDGFPTTARTF---NLLICSCGEAGLAKQAVVQFMKSKTFNY 217

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFE-IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325
           +    SYN ++   L     YK  E +YE M +   S D  TY +++ +  + G++D   
Sbjct: 218 RPFKHSYNAILNSLLGVK-QYKLIEWVYEQMLEDGFSPDVLTYNILLWTNYRLGKMDRFD 276

Query: 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385
           +LF EM      P F  +  L+  +GK  +   ++     M+  G   S   Y +LI+  
Sbjct: 277 RLFDEMARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTTLIDGL 336

Query: 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445
           ++AG L+      DEM  AG RP+   +T++I  +  SG+L+ A  +F +M   G LP  
Sbjct: 337 SRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELEKAKEMFKEMTVEGQLPNV 396

Query: 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505
            TY+ ++     +G+   A  L   M S G  P    Y+ L++ L K   +  A K++ +
Sbjct: 397 FTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIRD 456

Query: 506 MKTMGYSV 513
           M   G+ V
Sbjct: 457 MVKKGHYV 464



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 135/314 (42%), Gaps = 1/314 (0%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           ++Y L++   A+ G   A  +L  EM +  F  +   F  L+ S G+AG    ++  +M+
Sbjct: 152 NSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMK 211

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
            +   +RP    Y +++ S     +      ++++M   GF P+   + +++ ++ + GK
Sbjct: 212 SKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYEQMLEDGFSPDVLTYNILLWTNYRLGK 271

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           +D    +F +M R G  P   TY+ LL +     +  +A+   N M   G+   +  YT 
Sbjct: 272 MDRFDRLFDEMARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTT 331

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSG 544
           L+  L++   ++     L EM   G   DV    V++  Y+  G ++ A    + M   G
Sbjct: 332 LIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELEKAKEMFKEMTVEG 391

Query: 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNER 604
              N F    +         +  A  LL+         + V+Y++++++L +       R
Sbjct: 392 QLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEAR 451

Query: 605 HLMAILSATKHKAH 618
            ++  +    H  H
Sbjct: 452 KVIRDMVKKGHYVH 465



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 106/260 (40%), Gaps = 1/260 (0%)

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
           FR + N +  L+    + G      ++  EM   G   +A  +  LI S  +AG    A+
Sbjct: 147 FRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAV 206

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
             + + +   +RP    +  I+ S     +  +   ++  M   GF P   TY+ LL  +
Sbjct: 207 VQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYEQMLEDGFSPDVLTYNILLWTN 266

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
              G++D   +L++ M   GL P   TY  LL +L K      A   L  MK +G  + V
Sbjct: 267 YRLGKMDRFDRLFDEMARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSV 326

Query: 516 SASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
                L+  + + G+++    +L  M  +G R +      +    + +   E AK + + 
Sbjct: 327 LHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELEKAKEMFKE 386

Query: 575 YVESAAKVDLVLYTSVLAHL 594
                   ++  Y S++  L
Sbjct: 387 MTVEGQLPNVFTYNSMIRGL 406


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 200/424 (47%), Gaps = 12/424 (2%)

Query: 160 FVPKMVH---ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
           F P +V    +   L  +  +  ++ L R +  Q    P    Y  + D L + R     
Sbjct: 169 FQPNVVTYGTLINGLCKVGSTSAAIRLLR-SMEQGNCQPDVVVYTSIIDSLCKDRQVTQA 227

Query: 217 LSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
            +LF EM+H     GIS  +F+ YN +I  L    + +       ++++S    +   ++
Sbjct: 228 FNLFSEMIHQ----GISPSIFT-YNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFS 282

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            ++     +G   +A ++ + M K     +  TY  ++        +D A+K+F  M  +
Sbjct: 283 TVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCK 342

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
            F P    +++L++   K  R++ +M ++ EM      P+   Y +L+      G+L  A
Sbjct: 343 GFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDA 402

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           + L+ EM   G  P+F  + ++++   K+ +LD A+++   +E +   P    Y+ +++ 
Sbjct: 403 IALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDG 462

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +G++++A  L+++++S GL P + TYT ++  L ++ L+  A+K+  EMK  GYS +
Sbjct: 463 MCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPN 522

Query: 515 VSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
               +++   ++++      ++ L+ M + G   +      L E    + L +S K +L 
Sbjct: 523 GCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQILS 582

Query: 574 TYVE 577
            +++
Sbjct: 583 EFLQ 586



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 159/372 (42%), Gaps = 37/372 (9%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
            + +N +I+ L    K+      F K++    + +  +Y  L+      G    A  +  
Sbjct: 138 IATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLR 197

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS---FN---------- 341
           SME+G C  D   Y  +I SL K  ++  A  LF EM  +   PS   +N          
Sbjct: 198 SMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLC 257

Query: 342 ----------------------IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
                                 IF+++VD++ K G++  +  V   M   G  P+   Y 
Sbjct: 258 EWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYN 317

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           +L++ +    ++D A++++D M   GF P+   ++ +I  + K  +++ AM +F +M R 
Sbjct: 318 ALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRK 377

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
             +P   TYS L+      G++  A+ L++ M + G  P   +Y  LL  L K + +D A
Sbjct: 378 ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEA 437

Query: 500 AKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558
             +L  ++      D+    +++    + G ++ A      + S G+  N +    +   
Sbjct: 438 IALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMING 497

Query: 559 -CMKNALYESAK 569
            C +  L E++K
Sbjct: 498 LCQQGLLAEASK 509



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 136/326 (41%), Gaps = 1/326 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           + N+L+  F +      AF +   + K     + +T+  +I  L   G++   + LF +M
Sbjct: 105 TLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKM 164

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
               F+P+   + +L++ + K G    ++++   M+    +P   +Y S+I+S  K  ++
Sbjct: 165 IGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 224

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A  L+ EM   G  P+   +  +I +     +     ++  +M  +  +P    +S +
Sbjct: 225 TQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 284

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++     G+V  A  + + M   G+ P + TY AL+     R  +D A K+   M   G+
Sbjct: 285 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF 344

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
           + D VS S ++  Y K   ++ A+     M    +  N      L          + A  
Sbjct: 345 APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIA 404

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVR 596
           L    V      D V Y  +L +L +
Sbjct: 405 LFHEMVTRGQIPDFVSYCILLDYLCK 430



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 2/283 (0%)

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           LD A+  F  M   +  PS   F  L+ S+ K     T + +  +M   G  P+      
Sbjct: 49  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 108

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           LI S+    +L  A  +  ++   G +PN   F  +I      GK+   + +F  M   G
Sbjct: 109 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 168

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
           F P   TY  L+      G   +A++L  SM     +P +  YT+++  L K + V  A 
Sbjct: 169 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAF 228

Query: 501 KILLEMKTMGYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
            +  EM   G S  +   + L+  + +     H    L  M +S I  N  I   + ++ 
Sbjct: 229 NLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDAL 288

Query: 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHLVRCQDEQ 601
            K      A  +++  ++   + ++V Y +++  H +R + ++
Sbjct: 289 CKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDE 331


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 168/357 (47%), Gaps = 4/357 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++N  +  LAK+  L+ ++  F + L    + D  S+ + +  F   G   K FE+   M
Sbjct: 75  SFNNALDLLAKSGNLDRTWGFFTEYLGRT-QFDVYSFWITIKAFCENGNVSKGFELLAQM 133

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           E    S +   Y ++I +  ++G +D A  +F  M +     +  I+  +++   K G  
Sbjct: 134 ETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYK 193

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
               ++Y +M+  G  P+   Y SLI  Y + GKL  A +++DE+   G   N   + ++
Sbjct: 194 KDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNIL 253

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I    + G++  A  +   M+RA   PT  T++ L++   ++GQ+D A+     +   GL
Sbjct: 254 IGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGL 313

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P L TY  L++  +K     V ++++ EM+  G S       +LM  +++   ++ A  
Sbjct: 314 CPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYE 373

Query: 536 WLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
               M   G+  +      L    C+K  + E++K L ++ VE   + + V+Y +++
Sbjct: 374 MFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASK-LYKSMVEMHLQPNDVIYNTMI 429



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 129/276 (46%), Gaps = 1/276 (0%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN L+T +   G    AF++++ + K   + +  TY ++I  L + G++  A  L + M
Sbjct: 214 TYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM 273

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           K  +  P+   F  L+D +   G+LD ++    +++  G  P+   Y  LI  ++K G  
Sbjct: 274 KRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNS 333

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
                L  EM   G  P+   +T+++ +  +S  ++ A  +F  M+R G +P   TY  L
Sbjct: 334 SVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVL 393

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +      G +  A KLY SM    L+P    Y  ++    K      A K L EM   G 
Sbjct: 394 IHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGV 453

Query: 512 SVDVSAS-DVLMVYIKDGSVDHALRWLRFMGSSGIR 546
           + +V++    + +  KDG    A R L+ M  +G++
Sbjct: 454 TPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLK 489



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 118/274 (43%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    +  KL +++  F ++       +  +YN+L+     KG   KA  + E M
Sbjct: 214 TYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM 273

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
           ++   +    T+ +++  L  +G+LD A+   +++K     P+   +  L+    K G  
Sbjct: 274 KRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNS 333

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
               ++  EM+  G  PS   Y  L+ ++ ++  ++ A  ++  M+  G  P+   + ++
Sbjct: 334 SVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVL 393

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I      G +  A  ++  M      P    Y+ ++  +        A+K    M   G+
Sbjct: 394 IHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGV 453

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
            P +++Y + + +L K      A ++L EM   G
Sbjct: 454 TPNVASYISTIQILCKDGKSIEAKRLLKEMTEAG 487



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 121/266 (45%), Gaps = 1/266 (0%)

Query: 214 DGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272
           DG LSL  ++  + SK G++  +  YN +I  L +  ++  +    +++  +     T++
Sbjct: 225 DGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRT 284

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +N+LM    N G   KA    E ++         TY ++I   +K G      +L +EM+
Sbjct: 285 FNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREME 344

Query: 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392
           +R   PS   +  L+++  ++  ++ + +++  M+  G  P    Y  LI      G + 
Sbjct: 345 DRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMV 404

Query: 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
            A +L+  M     +PN  ++  +I  + K      A+    +M + G  P  ++Y   +
Sbjct: 405 EASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTI 464

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRP 478
           ++    G+   A +L   MT AGL+P
Sbjct: 465 QILCKDGKSIEAKRLLKEMTEAGLKP 490



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 77/178 (43%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN+L++ F   G      E+   ME    S    TY +++ +  +S  ++ A ++F  M
Sbjct: 319 TYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLM 378

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
           K     P  + +  L+  +   G +  + K+Y  M     +P+  +Y ++I  Y K    
Sbjct: 379 KRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNS 438

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
             AL+  +EM   G  PN   +   I+   K GK   A  +  +M  AG  P  S  S
Sbjct: 439 YKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPESLCS 496



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 61/376 (16%)

Query: 370 GHRPSAPMYVSLIESYAKAGKLD----------------------------------TAL 395
           GH PS+  + + ++  AK+G LD                                     
Sbjct: 68  GHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFWITIKAFCENGNVSKGF 127

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            L  +M   G  PN  ++T++IE+  ++G +D A  +F+ M+  G       Y+ ++   
Sbjct: 128 ELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGF 187

Query: 456 ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
              G      +LY  M   G+ P L TY +L+T   +   + +A K+  E+   G + + 
Sbjct: 188 FKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNA 247

Query: 516 SASDVLMVYI-KDGSVDHALRWLRFMGSSGI----RTNNFIVRQLFESC-MKNALYESAK 569
              ++L+  + + G V  A   L  M  + I    RT N ++  L  +  +  AL    K
Sbjct: 248 VTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEK 307

Query: 570 -------PLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLC 622
                  P L TY    +    V  +SV++ LVR   E  +R +     +     +  L 
Sbjct: 308 LKLIGLCPTLVTYNILISGFSKVGNSSVVSELVR---EMEDRGI-----SPSKVTYTILM 359

Query: 623 GLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVA 682
             F   +  ++       E FH +   +     ++   VL++ L + G +  A  ++K  
Sbjct: 360 NTFVRSDDIEKAY-----EMFHLMK-RIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSM 413

Query: 683 YENKLFPKAIVFDQHI 698
            E  L P  ++++  I
Sbjct: 414 VEMHLQPNDVIYNTMI 429



 Score = 42.0 bits (97), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 86/240 (35%), Gaps = 40/240 (16%)

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
           CG    A +  SL     ++  L+ +L  +  M + G  P+   F   ++  AKSG LD 
Sbjct: 37  CGRPRDAVINASL-----QSQLLEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLDR 91

Query: 429 AMSIFTD----------------------------------MERAGFLPTPSTYSCLLEM 454
               FT+                                  ME  G  P    Y+ L+E 
Sbjct: 92  TWGFFTEYLGRTQFDVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEA 151

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +G +D A  +++ M   GL      YT ++    K+       ++  +MK +G   +
Sbjct: 152 CCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPN 211

Query: 515 VSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           +   + L+  Y +DG +  A +    +   G+  N      L     +      A+ LLE
Sbjct: 212 LYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLE 271


>gi|224089100|ref|XP_002308636.1| predicted protein [Populus trichocarpa]
 gi|222854612|gb|EEE92159.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 193/432 (44%), Gaps = 8/432 (1%)

Query: 148 GPELETQLDKLQFVPKMVHITQALKVINDSDTSL-SLFRWAKRQSWYVPGDECYVMLFDV 206
           GP L T LD+    P++  I       + S   L S+F WA+++  +      +  + + 
Sbjct: 97  GPSLRTALDRTGIEPELGLIQSVFDHFDSSPKLLHSVFLWAEKKPGFQSSAALFNSMVNF 156

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV----L 262
           L ++R+F     L  + +  +    +     +  +I+   +A   E +   F+      L
Sbjct: 157 LGKAREFGSAWCLLLDRIGGNEGGDLVSSDTFAILIRRYTRAGMSEAAIRTFEYASSLDL 216

Query: 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE-SMEKGECSLDG-STYELMIPSLAKSGR 320
             + +  T  + +L+     +G    A + ++  +EK  C +     Y +++    +S +
Sbjct: 217 IHNSEAGTSLFEILLDSLCKEGHVRVATDYFDRKVEKDPCWVPSVRIYNILLNGWFRSRK 276

Query: 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380
           L  A +L+ EMK++N +PS   + +LV+   +  R++ ++++  EM+  G + +A +Y  
Sbjct: 277 LKHAERLWLEMKKKNVKPSVVTYGTLVEGYSRMRRVERAIELVDEMKREGIKSNAIVYNP 336

Query: 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440
           +I++ A+AG+    L + +   +    P    +  +++ + K+G L  A  I   M    
Sbjct: 337 IIDALAEAGRFKEVLGMMEHFFLCEEGPTISTYNSLVKGYCKAGDLVGASKILKMMISRE 396

Query: 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500
             PTP+TY+      +   +++  M LY  M  +G  P   TY  LL +L + + +D+A 
Sbjct: 397 VFPTPTTYNYFFRHFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEERLDLAV 456

Query: 501 KILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559
           +I  EM+  G  +D++ S +   +  K    + A      M   GI        +L +  
Sbjct: 457 QISKEMRARGCDMDLATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVPQYLTFHRLNDEF 516

Query: 560 MKNALYESAKPL 571
            K  L E A+ L
Sbjct: 517 RKQGLTELARRL 528



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 61/141 (43%)

Query: 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES 295
           + YN   ++ +K  K+E     + K+++S    D  +Y++L+ +   +     A +I + 
Sbjct: 402 TTYNYFFRHFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEERLDLAVQISKE 461

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M    C +D +T  +    L K  R + A   F++M  R   P +  F  L D   K G 
Sbjct: 462 MRARGCDMDLATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVPQYLTFHRLNDEFRKQGL 521

Query: 356 LDTSMKVYMEMQGCGHRPSAP 376
            + + ++   M    H  + P
Sbjct: 522 TELARRLCKLMSSVSHSKNLP 542


>gi|326507498|dbj|BAK03142.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1043

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 157/363 (43%), Gaps = 6/363 (1%)

Query: 195  PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
            P D     L     + +  D    LF+       K G      YN ++  L K  K+E +
Sbjct: 645  PEDSATATLIVQYGQEQKLDQAEELFESASTSFPKGG----PVYNAMVDALCKCGKIEEA 700

Query: 255  YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
            Y  F K+ D     D  + ++L+T     G   +A  I      GE  LD   Y   I S
Sbjct: 701  YHLFMKMADQGHSRDVVTISILVTHLTKHGKFQEAENIIHGCFNGEVELDTVVYNTFIKS 760

Query: 315  LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
            + +SG+L +A  ++  M       S   F  ++   G  G+L+ + +++   Q  G    
Sbjct: 761  MLESGKLYSAASIYDRMIFSGVPRSLQTFNIMISVYGLGGKLEKATEMFTAAQELGLPID 820

Query: 375  APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              +Y +++  Y KAG+   A  L++ M+  G  P    F  +I ++A SG  D A  +F 
Sbjct: 821  EKLYTNMLNFYGKAGRHQDASLLFNRMKEQGIMPGKISFNSMINAYATSGLHDDAEIVFQ 880

Query: 435  DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            +M   G +P   TY  L+  ++ S     A +   +M  +G+ P    ++ L+       
Sbjct: 881  EMHSHGQVPDSMTYLALIRAYSESRCYSKAEETIQNMLGSGITPSCPHFSHLIFAFLTEG 940

Query: 495  LVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
             +D A +I  +M+ +G +VD++    +M  Y++ G V+  +        S ++ ++FI+ 
Sbjct: 941  QIDEAQRICSQMQEIGVAVDLACCRAMMRAYLEHGRVEEGISLFETTRGS-LKPDSFILS 999

Query: 554  QLF 556
              F
Sbjct: 1000 AAF 1002



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 158/376 (42%), Gaps = 39/376 (10%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           AY  +++    A K+E++   F ++L++  + D  +   L+  +  +G        Y++ 
Sbjct: 175 AYTILLRAYGNAGKIELAEEAFLEMLEAGVEPDAVACGTLLCAYARRGRHGDMMLFYKAT 234

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE----RNFRPSFNIFASLVDSMGK 352
            +       S +  M+ SL K       I L++ M E     N  P+   +  ++ S  K
Sbjct: 235 CRRGVVPPMSAFNFMLSSLQKHRLHGKVIHLWKHMMEMEEANNVVPNHFTYTVVIGSFVK 294

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
            G L+ SM+V  +M+     P    Y SLI   A+ G+ + A+ L++EMR  G  P+   
Sbjct: 295 EGLLEESMQVLGKMRMSRLVPEEATYSSLISLSARHGRGEHAVMLYEEMRAHGIVPSNYT 354

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMER---------------------------------- 438
              ++  + KS     A+S+F++MER                                  
Sbjct: 355 CASLLALYDKSEDYSKALSLFSEMERSRVVIDEVIYGILIRIYGKIGLYDDAQRTFEEID 414

Query: 439 -AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
            AG L    TY  + ++H ++G  D A+ +  SM S  + P L +Y++LL      + + 
Sbjct: 415 NAGLLSDEQTYVAMAQVHMNAGNYDRALLVMGSMRSRNVTPSLFSYSSLLRCHVVMEDIA 474

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
            A +    +   G       +D+L +Y K G ++ A  ++  M    I+ +  +   + E
Sbjct: 475 AAEEAFRALCKYGLPDVFCCNDLLRLYFKLGQLEKASAFILNMRKEDIQLDEALCMTVME 534

Query: 558 SCMKNALYESAKPLLE 573
            C K+ +   A  +L+
Sbjct: 535 VCCKSGMIADADKILK 550



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 123/301 (40%), Gaps = 41/301 (13%)

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGK----- 390
           + PS   +  L+ + G AG+++ + + ++EM   G  P A    +L+ +YA+ G+     
Sbjct: 169 YEPSVVAYTILLRAYGNAGKIELAEEAFLEMLEAGVEPDAVACGTLLCAYARRGRHGDMM 228

Query: 391 ------------------------------LDTALRLWDEM----RIAGFRPNFGLFTMI 416
                                             + LW  M          PN   +T++
Sbjct: 229 LFYKATCRRGVVPPMSAFNFMLSSLQKHRLHGKVIHLWKHMMEMEEANNVVPNHFTYTVV 288

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I S  K G L+ +M +   M  +  +P  +TYS L+ + A  G+ + A+ LY  M + G+
Sbjct: 289 IGSFVKEGLLEESMQVLGKMRMSRLVPEEATYSSLISLSARHGRGEHAVMLYEEMRAHGI 348

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALR 535
            P   T  +LL L  K +    A  +  EM+     +D     +L+ +Y K G  D A R
Sbjct: 349 VPSNYTCASLLALYDKSEDYSKALSLFSEMERSRVVIDEVIYGILIRIYGKIGLYDDAQR 408

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL-AHL 594
               + ++G+ ++      + +  M    Y+ A  ++ +         L  Y+S+L  H+
Sbjct: 409 TFEEIDNAGLLSDEQTYVAMAQVHMNAGNYDRALLVMGSMRSRNVTPSLFSYSSLLRCHV 468

Query: 595 V 595
           V
Sbjct: 469 V 469



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 131/337 (38%), Gaps = 6/337 (1%)

Query: 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH-DSSKNGISLFSAYNRV 241
           LF  A  +   VP    +  +   L + R    ++ L+  M+  + + N +     Y  V
Sbjct: 229 LFYKATCRRGVVPPMSAFNFMLSSLQKHRLHGKVIHLWKHMMEMEEANNVVPNHFTYTVV 288

Query: 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC 301
           I    K   LE S     K+  S    +  +Y+ L++L    G    A  +YE M     
Sbjct: 289 IGSFVKEGLLEESMQVLGKMRMSRLVPEEATYSSLISLSARHGRGEHAVMLYEEMRAHGI 348

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
                T   ++    KS     A+ LF EM+         I+  L+   GK G  D + +
Sbjct: 349 VPSNYTCASLLALYDKSEDYSKALSLFSEMERSRVVIDEVIYGILIRIYGKIGLYDDAQR 408

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
            + E+   G       YV++ + +  AG  D AL +   MR     P+   ++ ++  H 
Sbjct: 409 TFEEIDNAGLLSDEQTYVAMAQVHMNAGNYDRALLVMGSMRSRNVTPSLFSYSSLLRCHV 468

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSC--LLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
               +  A   F  + + G    P  + C  LL ++   GQ++ A     +M    ++  
Sbjct: 469 VMEDIAAAEEAFRALCKYGL---PDVFCCNDLLRLYFKLGQLEKASAFILNMRKEDIQLD 525

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516
            +    ++ +  K  ++  A KIL EM   G ++  S
Sbjct: 526 EALCMTVMEVCCKSGMIADADKILKEMNNGGVTMKSS 562



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 105/231 (45%), Gaps = 8/231 (3%)

Query: 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422
           +M++Q C + PS   Y  L+ +Y  AGK++ A   + EM  AG  P+      ++ ++A+
Sbjct: 162 WMKLQLC-YEPSVVAYTILLRAYGNAGKIELAEEAFLEMLEAGVEPDAVACGTLLCAYAR 220

Query: 423 SGKLDIAMSIFTDMERAGFLPTPSTYSCL---LEMHASSGQVDSAMKLYNSMTSA-GLRP 478
            G+    M  +    R G +P  S ++ +   L+ H   G+V    K    M  A  + P
Sbjct: 221 RGRHGDMMLFYKATCRRGVVPPMSAFNFMLSSLQKHRLHGKVIHLWKHMMEMEEANNVVP 280

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV--DVSASDVLMVYIKDGSVDHALRW 536
              TYT ++    K  L++ + ++L +M+ M   V  + + S ++ +  + G  +HA+  
Sbjct: 281 NHFTYTVVIGSFVKEGLLEESMQVLGKMR-MSRLVPEEATYSSLISLSARHGRGEHAVML 339

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
              M + GI  +N+    L     K+  Y  A  L      S   +D V+Y
Sbjct: 340 YEEMRAHGIVPSNYTCASLLALYDKSEDYSKALSLFSEMERSRVVIDEVIY 390



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 169/429 (39%), Gaps = 30/429 (6%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM----VHDSSKNGISLFSAYNRVIQY 244
           R S  VP +  Y  L  +       +  + L++EM    +  S+    SL + Y++   Y
Sbjct: 309 RMSRLVPEEATYSSLISLSARHGRGEHAVMLYEEMRAHGIVPSNYTCASLLALYDKSEDY 368

Query: 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304
            +KA  L      F ++  S   ID   Y +L+ ++   GL   A   +E ++      D
Sbjct: 369 -SKALSL------FSEMERSRVVIDEVIYGILIRIYGKIGLYDDAQRTFEEIDNAGLLSD 421

Query: 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
             TY  M      +G  D A+ +   M+ RN  PS   ++SL+        +  + + + 
Sbjct: 422 EQTYVAMAQVHMNAGNYDRALLVMGSMRSRNVTPSLFSYSSLLRCHVVMEDIAAAEEAFR 481

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
            +   G  P       L+  Y K G+L+ A      MR    + +  L   ++E   KSG
Sbjct: 482 ALCKYG-LPDVFCCNDLLRLYFKLGQLEKASAFILNMRKEDIQLDEALCMTVMEVCCKSG 540

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS-----GQVDS-----AMKLYNSMTSA 474
            +  A  I  +M   G     ST   ++EM+A +      + D+     A +  +S  +A
Sbjct: 541 MIADADKILKEMNNGGVTMKSSTMVSMIEMYARNRTSVMQEQDTSPKALAYRTDSSALNA 600

Query: 475 GLR-----PGLSTYTALLTLLAKRKLVDVAAKILLEMKT-MGYSVDVSASDVLMV-YIKD 527
            L+     PG S+    L     R+     AK L E  T +G   + SA+  L+V Y ++
Sbjct: 601 TLKSLLDTPGGSSIACQLIRKFAREGSACVAKFLHEQLTELGVKPEDSATATLIVQYGQE 660

Query: 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587
             +D A        S+       +   + ++  K    E A  L     +     D+V  
Sbjct: 661 QKLDQAEELFE-SASTSFPKGGPVYNAMVDALCKCGKIEEAYHLFMKMADQGHSRDVVTI 719

Query: 588 TSVLAHLVR 596
           + ++ HL +
Sbjct: 720 SILVTHLTK 728


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 177/419 (42%), Gaps = 3/419 (0%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           N +D ++ +      +  Y P    Y  L   L   +     L L   M  D   N    
Sbjct: 140 NRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPN 199

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
             +YN VI    K  +++ +Y  F +++      D  +YN L+          KA  I +
Sbjct: 200 VVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQ 259

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M       D  TY +MI      G+L+ A++L ++M     +P    ++ L+    K G
Sbjct: 260 HMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIG 319

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R   +  V+  M   G +P++ +Y  L+  YA  G L     L D M   G       F 
Sbjct: 320 RCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFN 379

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
           ++I ++AK G +D AM+ FT+M + G  P   +YS ++ +   +G+V+ A+  +N M S 
Sbjct: 380 ILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSE 439

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHA 533
           GL P + ++T+L+  L          ++  EM   G   D    + +M  + K+G V  A
Sbjct: 440 GLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEA 499

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             +   +   G++ +      L +  C    + ES K  L+  V    + D   Y S+L
Sbjct: 500 QDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQ-LDRMVSIGLRPDSWTYNSLL 557



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 156/370 (42%), Gaps = 44/370 (11%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +IQY  K  +   +   F  ++    K ++  Y++L+  +  KG      ++ + M
Sbjct: 307 TYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLM 366

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +     +   + ++I + AK G +D A+  F EM++   RP    +++++  + K GR+
Sbjct: 367 IRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRV 426

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           + ++  + +M   G  P+   + SLI      G+      L  EM   G  P+      I
Sbjct: 427 EDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTI 486

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +++  K G++  A   F  +   G  P   +Y+ L++ +   G++D ++K  + M S GL
Sbjct: 487 MDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGL 546

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536
           RP   TY +LL                                    Y K+G V+ AL  
Sbjct: 547 RPDSWTYNSLLN----------------------------------GYFKNGRVEDALAL 572

Query: 537 LRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
            R M    ++    T+N ++  LF++        +A+ L    V+   ++ +  Y +VL 
Sbjct: 573 YREMFRKDVKFCAITSNIMLHGLFQA----GRIVAARELYMKMVDRGTQLRIETYNTVLG 628

Query: 593 HLVR--CQDE 600
            L    C DE
Sbjct: 629 GLCENSCVDE 638



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 89/430 (20%), Positives = 182/430 (42%), Gaps = 8/430 (1%)

Query: 219 LFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277
           L D M+ D    GI     A+N +I   AK   ++ +   F ++  +  + D  SY+ ++
Sbjct: 362 LLDLMIRD----GIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVI 417

Query: 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337
            +    G    A   +  M     S +  ++  +I  L   G      +L  EM  R   
Sbjct: 418 HILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIH 477

Query: 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL 397
           P      +++D++ K GR+  +   +  +   G +P    Y +LI+ Y   GK+D +++ 
Sbjct: 478 PDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQ 537

Query: 398 WDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457
            D M   G RP+   +  ++  + K+G+++ A++++ +M R        T + +L     
Sbjct: 538 LDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQ 597

Query: 458 SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517
           +G++ +A +LY  M   G +  + TY  +L  L +   VD A ++  ++++  + +DV  
Sbjct: 598 AGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRT 657

Query: 518 -SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576
            S V+   +K G +D A      M   G   +      + +S ++  L E +  L  +  
Sbjct: 658 FSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSME 717

Query: 577 ESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTG--PEQRKQP 634
           ++    D  +   ++  L+   D +     +  +        A    L      E++ Q 
Sbjct: 718 KNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALLIPIVSEKKYQK 777

Query: 635 VLSFVREFFH 644
            + F+ E +H
Sbjct: 778 EVKFLPEKYH 787



 Score = 40.8 bits (94), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 5/200 (2%)

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A+ L++ M  +G      +  ++I      G+LD+A + F    + G+     T + L++
Sbjct: 75  AVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIK 134

Query: 454 MHASSGQVDSAMKL-YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT-MGY 511
                 + D AM + +  M   G  P + +Y AL+  L   K    A ++L+ M    GY
Sbjct: 135 GLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGY 194

Query: 512 SVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568
           +     VS + V+  + K+G VD A      M   G+  +      L +   K    + A
Sbjct: 195 NCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKA 254

Query: 569 KPLLETYVESAAKVDLVLYT 588
             +L+   +     D   Y 
Sbjct: 255 VAILQHMFDKGVMPDTRTYN 274


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   ++E++       +  F   N
Sbjct: 72  AIECYRLTREHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFF---N 127

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM  ++  G   + F +  +M   
Sbjct: 128 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 187

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM  +   P+   F +L+D   K GR+D +
Sbjct: 188 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 247

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L DEM +   +P+   +T +I+ 
Sbjct: 248 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDG 307

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M + GL+P 
Sbjct: 308 CCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPD 367

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 368 SRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 410



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 142/332 (42%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 52  DLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 111

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           +E+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 112 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 171

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 172 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 231

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 232 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSM 291

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
                D ++ + ++    K+G +D A    + M    IR +      L     +      
Sbjct: 292 KELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVD 351

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 352 AEKMLREMLNVGLKPDSRTYTMIINEFCKKGD 383



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 138/311 (44%), Gaps = 1/311 (0%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F    +V+++L K    ++ +  ++++L+         +N+LM  F   G    A  +++
Sbjct: 88  FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 147

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
           ++ K        +Y  ++    + G LD   +L   M     +P    ++ L++ + K  
Sbjct: 148 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 207

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           ++D + +++ EM   G  P+   + +LI+ + K G++D A+ ++ +M      P+   + 
Sbjct: 208 KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYN 267

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I    K G L  A  +  +M      P   TY+ L++     G +DSA +    M   
Sbjct: 268 TLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQE 327

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHA 533
            +R     YTAL++ L +      A K+L EM  +G   D  + + ++  + K G V   
Sbjct: 328 NIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKG 387

Query: 534 LRWLRFMGSSG 544
            + L+ M   G
Sbjct: 388 SKLLKEMQRDG 398



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 135/303 (44%), Gaps = 3/303 (0%)

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           KG    D   +  +I +  +SG L  AI+ ++  +E  F   F+    +++ + K     
Sbjct: 46  KGTQRSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFK 105

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
                Y E+  CG+  S   +  L+  + K G +  A  ++D +   G RP+   +  ++
Sbjct: 106 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 165

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             + + G LD    + + M  +G  P   TYS L+       ++D A +L++ M   GL 
Sbjct: 166 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 225

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P   T+T L+    K   VD+A +I  +M +   S D+   + L+  + K G +  A   
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 285

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           +  M    ++ +      L + C K    +SA    +  ++   ++D V YT++++ L  
Sbjct: 286 IDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGL-- 343

Query: 597 CQD 599
           CQ+
Sbjct: 344 CQE 346



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 123/283 (43%), Gaps = 40/283 (14%)

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS--LIESYAKAGKLDTA 394
           R    +F+ L+ +  ++G L  +++ Y   +   H+   P      ++E   K       
Sbjct: 50  RSDLYVFSGLITAYLESGFLRDAIECYRLTRE--HKFWVPFDTCRKVLEHLMKLKYFKLV 107

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
              ++E+   G+  +   F +++    K G + +A S+F  + + G  P+  +Y+ L+  
Sbjct: 108 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 167

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           +   G +D   +L ++M ++G++P + TY+ L+  L K   +D A ++  EM   G   +
Sbjct: 168 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPN 227

Query: 515 -VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            V+ + ++  + K+G VD A+                I +Q+        L +S  P   
Sbjct: 228 GVTFTTLIDGHCKNGRVDLAME---------------IYKQM--------LSQSLSP--- 261

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616
                    DL+ Y +++  L +  D +   HL+  +S  + K
Sbjct: 262 ---------DLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELK 295


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 170/357 (47%), Gaps = 1/357 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           V+    KA +++ +     ++     K++   YN L+  +  +    +  E+ + ME G 
Sbjct: 139 VVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGG 198

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
                 TY +++  L+ +G +     +F E+K +N       +++++++  +AG +  + 
Sbjct: 199 VEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRAS 258

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
           +V+ E  G G  P+   Y +LI  + K G+++ A  L  +M++ G   N  +F  +I+ +
Sbjct: 259 EVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGY 318

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            + G +D A+ I   MER G      TY+ L        +++ A KL + MT  G+    
Sbjct: 319 CRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNY 378

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRF 539
            +YT L+++ +K   +  A ++  +M+  G    V   +V++  YIK GS+  A R+ + 
Sbjct: 379 VSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKE 438

Query: 540 MGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           M   G+  + +    L      N   + A  L E   +  AK ++V YT++++ L +
Sbjct: 439 MEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAK 495



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 150/333 (45%), Gaps = 38/333 (11%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA----------- 248
           Y +L D L+ + D   + S+FDE+   +    +  +SA   VI    +A           
Sbjct: 206 YTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSA---VINAYCRAGNVRRASEVFD 262

Query: 249 ----DKLEMSYCCFKKVLDSDCKI-----------DTQ---------SYNVLMTLFLNKG 284
               + +E +   +  +++  CKI           D Q          +N ++  +   G
Sbjct: 263 ECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHG 322

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           +  KA EI   ME+    LD  TY  +   L +  R++ A KL   M E     ++  + 
Sbjct: 323 MVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYT 382

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +L+    K G +  + +++ +M+G G RPS   Y  +I+ Y K+G +  A R   EM   
Sbjct: 383 TLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKK 442

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  P+   +  ++  H  +GK+D+A+ +F +M++ G  P    Y+ L+   A  G+ + A
Sbjct: 443 GLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEA 502

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
            + Y++M +AGL P  + Y+ L+  L   K  D
Sbjct: 503 FQFYDNMLAAGLTPDDTLYSMLVGSLHTDKRKD 535



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 159/362 (43%), Gaps = 6/362 (1%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCC 257
           CY  L D     ++   +  +  EM       G+      Y  ++  L+ A  +      
Sbjct: 170 CYNPLLDTYTRQKNDARVAEVLKEM----ESGGVEPTVGTYTILVDGLSTAGDISKVESV 225

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           F ++   +   D   Y+ ++  +   G   +A E+++         +  TY  +I    K
Sbjct: 226 FDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCK 285

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G+++AA  L  +M+ R    +  IF +++D   + G +D ++++   M+  G +     
Sbjct: 286 IGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYT 345

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +L     +  +++ A +L   M   G   N+  +T +I  H+K G +  A  +F DME
Sbjct: 346 YNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDME 405

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P+  TY+ +++ +  SG +  A +    M   GL P + TY AL+        VD
Sbjct: 406 GKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVD 465

Query: 498 VAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
           VA ++  EMK  G   +V A   L+  + K+G  + A ++   M ++G+  ++ +   L 
Sbjct: 466 VALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLV 525

Query: 557 ES 558
            S
Sbjct: 526 GS 527



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 146/322 (45%), Gaps = 2/322 (0%)

Query: 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332
           +++L   + + G P +A E  +       SLD  +    + SL ++G L  A +L ++  
Sbjct: 65  HDMLFRAYADAGAPDRAAEALDLTVSRLGSLDPRSLTSSLLSLRRTGHLLPAAELLRKAL 124

Query: 333 ERNFRPSFNIFAS-LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
                    + AS +VD   KAGR+D + ++  EM   G + +A  Y  L+++Y +    
Sbjct: 125 ASCPGCITPLSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKND 184

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
                +  EM   G  P  G +T++++  + +G +    S+F +++R         YS +
Sbjct: 185 ARVAEVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAV 244

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +  +  +G V  A ++++     G+ P   TY AL+    K   ++ A  +L +M+  G 
Sbjct: 245 INAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGV 304

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             + +  + ++  Y + G VD AL     M   GI+ + +    L     +    E AK 
Sbjct: 305 GHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKK 364

Query: 571 LLETYVESAAKVDLVLYTSVLA 592
           LL    E+  + + V YT++++
Sbjct: 365 LLHIMTENGVESNYVSYTTLIS 386


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/459 (22%), Positives = 202/459 (44%), Gaps = 42/459 (9%)

Query: 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS 233
           IND+ ++ +LF+ AK     + G     +++  +  +    G +   +E+VH+  ++GI 
Sbjct: 360 INDTQSADNLFKEAKTNLGDLNG-----IIYSNIIHAHCQSGNMDRAEELVHEMEEDGID 414

Query: 234 L-FSAYNRVIQ-YLAKADKLE-------MSYCCF-------------------------- 258
               AY+ ++  Y    D+ +       +  CCF                          
Sbjct: 415 APIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAI 474

Query: 259 -KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
            K++  S  K + ++Y++L++ F++      AF I+E M K     D + Y L+I +  K
Sbjct: 475 SKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCK 534

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
            G +D AI++ ++M++   +PS   F  +++    AG +  ++ +   M+  G  P+   
Sbjct: 535 MGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMT 594

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
           Y +LI    +  +++ A+ + ++M IAG  PN   +T+I+  +A +G +  A   FT ++
Sbjct: 595 YNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIK 654

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G       Y  LL     SG++ SA+ +   M+S  +      Y  L+   A+R  V 
Sbjct: 655 EGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVW 714

Query: 498 VAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            AA ++ +MK  G   ++ + +  +    K G +  A   +  M   G++ N      L 
Sbjct: 715 EAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLI 774

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
           +   + +L + A    E    +  K D   Y  ++  L+
Sbjct: 775 KGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLL 813



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 161/361 (44%), Gaps = 6/361 (1%)

Query: 210 SRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268
           +RD  G LS  +EM       GI L    Y+ +I    K +  + +   FK+   +   +
Sbjct: 325 ARDMRGALSCTEEM----KAEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDL 380

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +   Y+ ++      G   +A E+   ME+         Y  M+            + +F
Sbjct: 381 NGIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVF 440

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           + +KE  F PS   +  L++   K G++  ++ +  EM+  G + +   Y  LI  +   
Sbjct: 441 ERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHL 500

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
                A R+++EM  +G +P+  ++ ++IE+  K G +D A+ I   M++    P+   +
Sbjct: 501 HDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAF 560

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             ++E  A +G +  A+ + + M  +G  P + TY AL+  L ++  V+ A  +L +M  
Sbjct: 561 RPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSI 620

Query: 509 MGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G + +     ++M  Y   G +  A  +   +   G++ + +I   L  +C K+   +S
Sbjct: 621 AGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQS 680

Query: 568 A 568
           A
Sbjct: 681 A 681



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 138/307 (44%), Gaps = 3/307 (0%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +S   P    Y +L +   +  + D  + + ++M  +  +       A+  +I+  A A 
Sbjct: 515 KSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPS---NRAFRPIIEGFAVAG 571

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            ++ +      +  S C     +YN L+   + K    +A  +   M     + +  TY 
Sbjct: 572 DMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYT 631

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           +++   A +G +  A + F ++KE   +    I+ +L+ +  K+GR+ +++ V  EM   
Sbjct: 632 IIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQ 691

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
               +  +Y  LI+ +A+ G +  A  L  +M+  G  PN   +T  I +  K+G +  A
Sbjct: 692 KIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 751

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
            ++  +M   G  P   TY+ L++  A +   D A+K +  M  AGL+P  + Y  L+T 
Sbjct: 752 QTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTS 811

Query: 490 LAKRKLV 496
           L  R  V
Sbjct: 812 LLSRATV 818



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/331 (18%), Positives = 142/331 (42%), Gaps = 1/331 (0%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K   + + +++  +  +G  + A   +E+M       +   +  ++ + A +  +  A+ 
Sbjct: 274 KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALS 333

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
             +EMK      +   ++ L+   GK     ++  ++ E +      +  +Y ++I ++ 
Sbjct: 334 CTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHC 393

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           ++G +D A  L  EM   G       +  ++  +         + +F  ++   F P+  
Sbjct: 394 QSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSII 453

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
           +Y CL+ ++   G+V  A+ +   M S+G++    TY+ L++          A +I  EM
Sbjct: 454 SYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEM 513

Query: 507 KTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
              G   D +  ++L+  + K G++D A+R L  M    ++ +N   R + E        
Sbjct: 514 LKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDM 573

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           + A  +L+    S     ++ Y +++  L+R
Sbjct: 574 KRALDILDLMRRSGCAPTVMTYNALIHGLIR 604


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 146/326 (44%), Gaps = 38/326 (11%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y +L D L+ + D   + +++DEM   +    +  +SA   VI    +   +  +   F 
Sbjct: 221 YTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSA---VINAYCRGGNVRRASEVFD 277

Query: 260 K---------------VLDSDCKI-----------DTQ---------SYNVLMTLFLNKG 284
           +               +++  CKI           D Q          +N ++  +   G
Sbjct: 278 ECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHG 337

Query: 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344
           +  KA EI   MEK    LD  TY  +   L +  R++ A KL   M E+   P++  + 
Sbjct: 338 MVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYT 397

Query: 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404
           +L+    K G +  + +++ +M+G G RPS   Y  +I+ Y K G +  A R   EM   
Sbjct: 398 TLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKK 457

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
           G  P+   +  ++  H  +GK+D+A+ +F +M+  G  P    Y+ L+   A  G+ + A
Sbjct: 458 GLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEA 517

Query: 465 MKLYNSMTSAGLRPGLSTYTALLTLL 490
            +LY+ M +AGL P  + Y+ L+  L
Sbjct: 518 FQLYDDMLAAGLTPDDTLYSVLVGSL 543



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 160/361 (44%), Gaps = 4/361 (1%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           CY  L D     R+ D +  L  EM +   +  +     Y  ++  L++A  +      +
Sbjct: 185 CYNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTVG---TYTILVDGLSRAGDISKVEAVY 241

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318
            ++   +   D   Y+ ++  +   G   +A E+++         +  TY  +I    K 
Sbjct: 242 DEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKI 301

Query: 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           G+++AA  L  +M+ R    +  +F +++D   + G ++ ++++   M+  G       Y
Sbjct: 302 GQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTY 361

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438
            +L     +  +++ A +L   M   G  PN+  +T +I  HAK G +  A  +F DME 
Sbjct: 362 NTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEG 421

Query: 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV 498
            G  P+  TY+ +++ +  +G +  A +    M   GL P + TY  L+        VDV
Sbjct: 422 KGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDV 481

Query: 499 AAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557
           A ++  EMK  G   +V A   L+  + K+G  + A +    M ++G+  ++ +   L  
Sbjct: 482 ALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVG 541

Query: 558 S 558
           S
Sbjct: 542 S 542



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 161/346 (46%), Gaps = 18/346 (5%)

Query: 253 MSYCCFKKVLDSDCKI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           ++ CC+  +LDS  +  +  +   L+    N+G+                     TY ++
Sbjct: 181 LNACCYNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTV----------------GTYTIL 224

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           +  L+++G +     ++ EMK +N       +++++++  + G +  + +V+ E  G G 
Sbjct: 225 VDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGV 284

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P+   Y +LI  + K G+++ A  L  +M++ G   N  +F  +I+ + + G ++ A+ 
Sbjct: 285 EPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALE 344

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           I   ME+ G      TY+ L        +++ A KL + M   G+ P   +YT L+++ A
Sbjct: 345 IKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHA 404

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           K   +  A ++  +M+  G    V   +V++  YIK+GS+  A R+ + M   G+  + +
Sbjct: 405 KEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIY 464

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
               L      N   + A  L E       K ++V YT++++ L +
Sbjct: 465 TYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAK 510


>gi|356540373|ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 881

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 176/402 (43%), Gaps = 7/402 (1%)

Query: 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCC 257
           C  ++ +   E  D D  +SL  +M       G  L S +Y  +I+ L    +   +   
Sbjct: 87  CSQLICECCKEG-DLDRAMSLLSQM----EAKGFHLSSTSYACLIEALGNVGRTSEADML 141

Query: 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317
           FK+++    K     Y+ L+  FL KGL   A  + + M+         TY++ +     
Sbjct: 142 FKEMVCYGYKPKLNLYHSLLRGFLKKGLLGLANGVLKEMDDLGIWRSKETYQIFLDYYVG 201

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377
           +GRL+       EMK++ F  +  +++ +V      G    +++V  E++  G      +
Sbjct: 202 AGRLEDTWSTINEMKQKGFPLNSFMYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHI 261

Query: 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437
             S+I+++ K G+LD AL+L+ +M+  G RPN   +  +I+ H K G    A  +FTDM+
Sbjct: 262 CNSIIDTFGKYGELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKAFHLFTDMQ 321

Query: 438 RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P P  +  ++      G+ D   K + SM   G +   + Y  L+ +  +     
Sbjct: 322 EQGLYPDPKIFVTIISCLGEQGKWDIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQ 381

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A + +  +K+ G  V  S   VL   Y + G  +  +  L+ M + GI  N  ++  L 
Sbjct: 382 NAGECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAEGIEPNIVMLNMLI 441

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
            +      Y  A  +     ES    D+V YT+++   +R +
Sbjct: 442 NAFGNAGRYMEAISVYHHIKESGVSPDVVTYTTLMKAFIRAK 483



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 165/369 (44%), Gaps = 5/369 (1%)

Query: 215 GMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273
           G+L L + ++ +    GI      Y   + Y   A +LE ++    ++      +++  Y
Sbjct: 168 GLLGLANGVLKEMDDLGIWRSKETYQIFLDYYVGAGRLEDTWSTINEMKQKGFPLNSFMY 227

Query: 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           + ++ ++ + G+  KA E+ E + +   SLD      +I +  K G LD A+KLF++M++
Sbjct: 228 SKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKLFKKMQK 287

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
              RP+   + SL+    K G    +  ++ +MQ  G  P   ++V++I    + GK D 
Sbjct: 288 EGVRPNIVTWNSLIKWHCKEGDFMKAFHLFTDMQEQGLYPDPKIFVTIISCLGEQGKWDI 347

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
             + ++ M+I G +    ++ ++++ + + GK   A      ++  G L +PS +  L  
Sbjct: 348 IKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNAGECVQALKSEGVLVSPSIFCVLAN 407

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +A  G  +  + +   M + G+ P +     L+           A  +   +K  G S 
Sbjct: 408 AYAQQGLCEQVIMVLQIMEAEGIEPNIVMLNMLINAFGNAGRYMEAISVYHHIKESGVSP 467

Query: 514 DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           DV     LM  +I+    D      + M + G  T +   RQ+ +  +   L +  + ++
Sbjct: 468 DVVTYTTLMKAFIRAKKFDEVPIIYKEMENDGC-TPDRKARQMLQVAL--TLIDHDRLII 524

Query: 573 ETYVESAAK 581
           +T +  AAK
Sbjct: 525 KTRMLLAAK 533



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 116/271 (42%), Gaps = 5/271 (1%)

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
            N   S N+ + L+    K G LD +M +  +M+  G   S+  Y  LIE+    G+   
Sbjct: 78  ENEELSSNLCSQLICECCKEGDLDRAMSLLSQMEAKGFHLSSTSYACLIEALGNVGRTSE 137

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  L+ EM   G++P   L+  ++    K G L +A  +  +M+  G   +  TY   L+
Sbjct: 138 ADMLFKEMVCYGYKPKLNLYHSLLRGFLKKGLLGLANGVLKEMDDLGIWRSKETYQIFLD 197

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            +  +G+++      N M   G       Y+ ++ +     +   A ++L E++  G S+
Sbjct: 198 YYVGAGRLEDTWSTINEMKQKGFPLNSFMYSKVVGIYRDNGMWKKAIEVLEEIRERGISL 257

Query: 514 DVS-ASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLL 572
           D    + ++  + K G +D AL+  + M   G+R N      L +   K   +  A  L 
Sbjct: 258 DTHICNSIIDTFGKYGELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKAFHLF 317

Query: 573 ETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
               E     D  ++ ++++    C  EQ +
Sbjct: 318 TDMQEQGLYPDPKIFVTIIS----CLGEQGK 344



 Score = 46.2 bits (108), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 88/186 (47%), Gaps = 8/186 (4%)

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
           + A  LF ++  +++ P +  F+  + +         +M ++ ++   G +    +  +L
Sbjct: 643 EQAFLLFCQLHRQSYLPDWYTFSIALKASTYFATEQRAMDIHSQVIKEGFQEDTVLCNAL 702

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I +YA  G L  + ++++EM   G R      +M ++S+A  G+   A+ +F   +R   
Sbjct: 703 IHAYAWCGSLALSKQVFNEM---GCRDLVSWNSM-LKSYAIHGQTKDAVELF---QRMNV 755

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMT-SAGLRPGLSTYTALLTLLAKRKLVDVAA 500
               +T+  LL   +  G VD  +KL+N M+   G+ P L  Y+ ++ L      +  A 
Sbjct: 756 CTDSATFVVLLSACSHVGFVDEGVKLFNCMSDDHGVVPQLDHYSCMVDLYGGAGKIFEAE 815

Query: 501 KILLEM 506
           +++ +M
Sbjct: 816 ELIRKM 821


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 144/338 (42%), Gaps = 12/338 (3%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +YN L+  F+ +G  ++A E+Y+ M          TY  MI    K  RLDAA  +F
Sbjct: 290 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMF 349

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             M  +   P    F +L+    +A R+D  +K+  EM   G   +   Y +LI  + + 
Sbjct: 350 YLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV 409

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA--------- 439
           G L+ A  L  EM  +G  PN      +++    +GKL  A+ +F  M+++         
Sbjct: 410 GDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHP 469

Query: 440 --GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497
             G  P   TY+ L+    + G+   A +LY  M   G+ P   TY +++  L K+  +D
Sbjct: 470 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLD 529

Query: 498 VAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLF 556
            A ++   M +  +S +V     L+  Y K G VD  L     MG  GI  N      L 
Sbjct: 530 EATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 589

Query: 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594
               K      A  + +  + S    D +   ++L  L
Sbjct: 590 HGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGL 627



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 122/269 (45%), Gaps = 12/269 (4%)

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           + E +E+ + S D  TY  +I +  K G+   A +L+ EM  R   PS   ++S++D   
Sbjct: 278 LQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFC 337

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K  RLD +  ++  M   G  P    + +LI  Y +A ++D  ++L  EM  AG   N  
Sbjct: 338 KQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTI 397

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +T +I    + G L+ A  +  +M  +G  P   T + LL+    +G++  A++++ +M
Sbjct: 398 TYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAM 457

Query: 472 TSA-----------GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASD 519
             +           G+ P + TY  L++ L        A ++  EM   G   D ++ + 
Sbjct: 458 QKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNS 517

Query: 520 VLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
           V+    K   +D A +    MGS     N
Sbjct: 518 VIHGLCKQSRLDEATQMFDSMGSKSFSPN 546



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 146/349 (41%), Gaps = 12/349 (3%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            YN +I    K  K   +   + ++L       T +Y+ ++  F  +     A  ++  M
Sbjct: 293 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLM 352

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               CS D  T+  +I    ++ R+D  IKL  EM E     +   + +L+    + G L
Sbjct: 353 ATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDL 412

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR-----------IAG 405
           + +  +  EM   G  P+     +L++     GKL  AL ++  M+             G
Sbjct: 413 NAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNG 472

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             P+   + ++I      GK   A  ++ +M   G +P   TY+ ++       ++D A 
Sbjct: 473 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEAT 532

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVY 524
           ++++SM S    P + T+T L+    K   VD   ++  EM   G   + ++   ++  +
Sbjct: 533 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGF 592

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
            K G+++ AL   + M +SG+  +   +R +          + A  +LE
Sbjct: 593 RKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLE 641



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 8/218 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258
           Y  L     +  D +    L  EMV      N ++  +  + +       D LEM     
Sbjct: 399 YTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 458

Query: 259 KKVLDSDC-------KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           K  +D D        + D Q+YN+L++  +N+G   +A E+YE M       D  TY  +
Sbjct: 459 KSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSV 518

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L K  RLD A ++F  M  ++F P+   F +L++   KAGR+D  ++++ EM   G 
Sbjct: 519 IHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI 578

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
             +A  Y++LI  + K G ++ AL ++ EM  +G  P+
Sbjct: 579 VANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPD 616



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 132/290 (45%), Gaps = 12/290 (4%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            +N +I    +A +++       ++ ++    +T +Y  L+  F   G    A ++ + M
Sbjct: 363 TFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEM 422

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE-----------RNFRPSFNIFAS 345
                  +  T   ++  L  +G+L  A+++F+ M++               P    +  
Sbjct: 423 VSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNI 482

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+  +   G+   + ++Y EM   G  P    Y S+I    K  +LD A +++D M    
Sbjct: 483 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKS 542

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
           F PN   FT +I  + K+G++D  + +F +M R G +    TY  L+      G ++ A+
Sbjct: 543 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGAL 602

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK-TMGYSVD 514
            ++  M ++G+ P   T   +LT L  ++ +  A  +L +++ ++GY ++
Sbjct: 603 DIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQMSVGYQLE 652



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 138/304 (45%), Gaps = 12/304 (3%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A +++  M    C  +  T+  ++  L + GR+  A+ L   M E   +P+   + ++V
Sbjct: 166 EALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIV 221

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMY-----VSLIESYAKAGKLDTALRLWDEM 401
           D M K G   +++ +  +M+   H +P+  ++       +I  +  +G+   A +L  EM
Sbjct: 222 DGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEM 281

Query: 402 -RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
                  P+   +  +I +  K GK   A  ++ +M   G +P+  TYS +++      +
Sbjct: 282 LERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNR 341

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASD 519
           +D+A  ++  M + G  P + T+  L+    + K VD   K+L EM   G   + ++ + 
Sbjct: 342 LDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTT 401

Query: 520 VLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA 579
           ++  + + G ++ A   L+ M SSG+  N      L +    N   + A  + +   +S 
Sbjct: 402 LIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 461

Query: 580 AKVD 583
             +D
Sbjct: 462 MDID 465



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 12/232 (5%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           PS   +  L+    + G+LD  + L  +M +     N   FT++++      KL  A+S 
Sbjct: 76  PSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALST 135

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
           F  + + GF PT  T+S LL       ++  A+ L++ M     +P + T+T L+  L +
Sbjct: 136 FGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMC----KPNVVTFTTLMNGLCR 191

Query: 493 RKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGS-SGIRTNNF 550
              V  A  +L  M   G   + ++   ++    K G    AL  LR M   S I+ N  
Sbjct: 192 EGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVV 251

Query: 551 IVRQLFESCMKNALYES-----AKPLLETYVE-SAAKVDLVLYTSVLAHLVR 596
           I      +CM N    S     A+ LL+  +E      D+V Y +++   V+
Sbjct: 252 IWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVK 303


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 153/318 (48%), Gaps = 7/318 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY--NRVIQYLAKADKLE 252
           P    Y +LFD L  + +   MLSLF E    S K G+ +  AY  + ++  L K  K+ 
Sbjct: 119 PDGFTYSILFDGLTRTGESRTMLSLFAE----SLKKGV-MLGAYTCSILLNGLCKDGKVA 173

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +    + ++ +     T  YN L+  +        AF I+E M+      D  TY  +I
Sbjct: 174 KAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALI 233

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L K   +  A  L  EM++    PS   F +L+D+ G AG+L+    V  +MQ  G +
Sbjct: 234 NGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIK 293

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
                + S+++++ K GK+  A+ + D+M      PN  ++  II+++ +SG  + A  +
Sbjct: 294 SDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLL 353

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M+ +G   +  TY+ LL+    S Q+D A +L  ++ + GLRP + +Y  +++    
Sbjct: 354 VEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN 413

Query: 493 RKLVDVAAKILLEMKTMG 510
           +   D A ++L EM   G
Sbjct: 414 KGDTDKALELLQEMNKYG 431



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 184/443 (41%), Gaps = 39/443 (8%)

Query: 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253
           VP    Y  + D   +  D +    L D+M+HD  K  I     YN ++  L +A +++ 
Sbjct: 48  VPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIV---TYNVLLSGLCRAGRMDE 104

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY-ESMEKG------ECSL--- 303
           +     ++       D  +Y++L       G       ++ ES++KG       CS+   
Sbjct: 105 TRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLN 164

Query: 304 ----DGST---------------------YELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
               DG                       Y  +I    +   L  A  +F++MK R+ RP
Sbjct: 165 GLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRP 224

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
               + +L++ + K   +  +  + MEM+  G  PS   + +LI++Y  AG+L+    + 
Sbjct: 225 DHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVL 284

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
            +M+  G + +   F  ++++  K+GK+  A++I  DM      P    Y+ +++ +  S
Sbjct: 285 SDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIES 344

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSA 517
           G  + A  L   M ++G+   + TY  LL  L +   +D A +++  ++  G   D VS 
Sbjct: 345 GDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSY 404

Query: 518 SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
           + ++      G  D AL  L+ M   GIR        L  +          + L +  + 
Sbjct: 405 NTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLH 464

Query: 578 SAAKVDLVLYTSVLAHLVRCQDE 600
              +    +Y  ++   VRC+++
Sbjct: 465 KNVEPSSSIYGIMVDAYVRCEND 487



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 171/378 (45%), Gaps = 6/378 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           L +FDEMV       +  +  YN +I    K   LE  +    ++L    K +  +YNVL
Sbjct: 36  LKVFDEMV---DMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVL 92

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           ++     G   +   + + M       DG TY ++   L ++G     + LF E  ++  
Sbjct: 93  LSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGV 152

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
                  + L++ + K G++  + +V   +   G  P+  +Y +LI  Y +   L  A  
Sbjct: 153 MLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 212

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           ++++M+    RP+   +  +I    K   +  A  +  +ME++G  P+  T++ L++ + 
Sbjct: 213 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 272

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM--KTMGYSVD 514
           ++GQ++    + + M   G++  + ++ +++    K   +  A  IL +M  K +  +  
Sbjct: 273 TAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ 332

Query: 515 VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
           V  S ++  YI+ G  + A   +  M +SG+  +      L +   +++  + A+ L+ T
Sbjct: 333 VYNS-IIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYT 391

Query: 575 YVESAAKVDLVLYTSVLA 592
                 + D+V Y ++++
Sbjct: 392 LRNQGLRPDVVSYNTIIS 409



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 142/325 (43%), Gaps = 3/325 (0%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
            +  VP    Y  L +   + RD  G   +F++M    S++       YN +I  L K +
Sbjct: 184 HTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM---KSRHIRPDHITYNALINGLCKLE 240

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            +  +     ++  S      +++N L+  +   G   K F +   M++     D  ++ 
Sbjct: 241 MVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFG 300

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
            ++ +  K+G++  A+ +  +M  ++  P+  ++ S++D+  ++G  + +  +  +M+  
Sbjct: 301 SVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNS 360

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G   S   Y  L++   ++ ++D A  L   +R  G RP+   +  II +    G  D A
Sbjct: 361 GVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKA 420

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           + +  +M + G  PT  TY  L+   AS+G+V     LY  M    + P  S Y  ++  
Sbjct: 421 LELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDA 480

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVD 514
             + +     A +  EM   G + D
Sbjct: 481 YVRCENDSKVASLKKEMSEKGIAFD 505



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 137/334 (41%), Gaps = 36/334 (10%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  +Y ++I  L +SG+   A+K+F EM +    P++  + +++D   K G L+   ++ 
Sbjct: 15  DAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLR 74

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM--------------------RI 403
            +M   G +P+   Y  L+    +AG++D    L DEM                    R 
Sbjct: 75  DQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRT 134

Query: 404 AGFRPNFGLF---------------TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
              R    LF               ++++    K GK+  A  +   +   G +PT   Y
Sbjct: 135 GESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIY 194

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+  +     +  A  ++  M S  +RP   TY AL+  L K ++V  A  +++EM+ 
Sbjct: 195 NTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEK 254

Query: 509 MGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G    V   + L+  Y   G ++     L  M   GI+++      + ++  KN     
Sbjct: 255 SGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPE 314

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQ 601
           A  +L+  +      +  +Y S++   +   D +
Sbjct: 315 AVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTE 348



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 7/230 (3%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P A  Y  +I    ++GK   AL+++DEM   G  PN+  +  +I+ H K G L+    +
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492
              M   G  P   TY+ LL     +G++D    L + M S  + P   TY+ L   L +
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 493 ----RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
               R ++ + A+ L +   +G     + S +L    KDG V  A + L  +  +G+   
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGA---YTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPT 190

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598
             I   L     +      A  + E       + D + Y +++  L + +
Sbjct: 191 TVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLE 240


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 149/343 (43%), Gaps = 4/343 (1%)

Query: 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239
           ++  +R  +   ++VP D C  +L + L + + F  +   + E++       +  F   N
Sbjct: 74  AIECYRLTREHKFWVPFDTCRKVL-EHLMKLKYFKLVWGFYQEILECGYPASLYFF---N 129

Query: 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299
            ++    K   + ++   F  +     +    SYN LM+ ++  G   + F +  +M   
Sbjct: 130 ILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHAS 189

Query: 300 ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359
               D  TY ++I  L K  ++D A +LF EM      P    F +L+D   K GR+D +
Sbjct: 190 GVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLA 249

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           M++Y +M      P    Y +LI    K G L  A  L  EM + G +P+   +T +I+ 
Sbjct: 250 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDG 309

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             K G LD A      M +         Y+ L+      G+   A K+   M S G +P 
Sbjct: 310 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPD 369

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522
             TYT ++    K+  V   +K+L EM+  G+   V   +VLM
Sbjct: 370 TRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 144/332 (43%), Gaps = 1/332 (0%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D   ++ L+T +L  G    A E Y    + +  +   T   ++  L K          +
Sbjct: 54  DIXVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 113

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
           QE+ E  +  S   F  L+    K G +  +  V+  +   G RPS   Y +L+  Y + 
Sbjct: 114 QEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRL 173

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G LD   RL   M  +G +P+   ++++I    K  K+D A  +F +M   G +P   T+
Sbjct: 174 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTF 233

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L++ H  +G+VD AM++Y  M S  L P L TY  L+  L K+  +  A  ++ EM  
Sbjct: 234 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSL 293

Query: 509 MGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567
            G   D ++ + ++    K+G +D A    + M    IR ++     L     +      
Sbjct: 294 KGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 353

Query: 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           A+ +L   +    K D   YT ++    +  D
Sbjct: 354 AEKMLREMLSVGXKPDTRTYTMIINEFCKKGD 385


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 143/301 (47%), Gaps = 1/301 (0%)

Query: 311 MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
           +  S+ + G  +  + L +E++        +  + L++      R+D  + V  ++   G
Sbjct: 68  LFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLG 127

Query: 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
             PS   + +L+      GK+D  + L+D+M + G +PN   + +II S +KSGK + A+
Sbjct: 128 LEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEAL 187

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
                ME+ G +P    YS L++ +   GQ+D A  +++ M S G  P + TYT+L+   
Sbjct: 188 GFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGY 247

Query: 491 AKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549
            K + ++ A ++L E    G   D V+ + ++    + G    A +  R++ + G   N 
Sbjct: 248 CKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNI 307

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609
                L +   K+   E A  L +    S  K +LV+YT ++  L +C   ++ + L + 
Sbjct: 308 MTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSR 367

Query: 610 L 610
           L
Sbjct: 368 L 368



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 150/327 (45%), Gaps = 3/327 (0%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    +  L + L      D ++ L+D+M+    +  +     YN +I  L+K+ K   +
Sbjct: 130 PSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVY---TYNVIINSLSKSGKANEA 186

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               K++    C  +  +Y+ L+  +  +G   +A  +++ M    C+ +  TY  ++  
Sbjct: 187 LGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNG 246

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
             K  R++ A++L  E   +   P    F +++  + +AGR   + +++  +   GH P+
Sbjct: 247 YCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPN 306

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y  L++   K G L+ A  L+ EM+ +  +PN  ++T++I+S  K GK+     +F+
Sbjct: 307 IMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFS 366

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            +   G  P   TY+ L+      G +  A KL+  M   G  P    Y  ++    + K
Sbjct: 367 RLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHK 426

Query: 495 LVDVAAKILLEMKTMGYSVDVSASDVL 521
              +A +++ EM   G+S D +   +L
Sbjct: 427 DPSMARQLVEEMVNRGFSADAATRALL 453



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 122/251 (48%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YNV++      G   +A    + MEK  C  +   Y  +I      G++D A  +F  M
Sbjct: 169 TYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLM 228

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             +   P+   + SL++   K  R++ ++++  E    G  P    + ++I    +AG+ 
Sbjct: 229 VSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRP 288

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
             A +L+  +   G  PN   + ++++   K G L+ A ++F +M+R+   P    Y+ L
Sbjct: 289 LAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTIL 348

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++     G++    +L++ +   GL+P + TYTAL+  L K  L+  A K+  +M+  G 
Sbjct: 349 IDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGC 408

Query: 512 SVDVSASDVLM 522
           + D  A +V++
Sbjct: 409 TPDKCAYNVII 419



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 139/294 (47%), Gaps = 1/294 (0%)

Query: 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363
           D  +  ++I       R+D  + +  ++ +    PS   F +L++ +   G++D  M +Y
Sbjct: 96  DIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLY 155

Query: 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            +M   G +P+   Y  +I S +K+GK + AL    +M   G  PN   ++ +I+ +   
Sbjct: 156 DDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLR 215

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483
           G++D A S+F  M   G  P   TY+ L+  +    +++ A++L +     GL P + T+
Sbjct: 216 GQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTF 275

Query: 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGS 542
           T +++ L +      A ++   +   G++ ++    VL+  + K G+++ A    + M  
Sbjct: 276 TTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQR 335

Query: 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
           S ++ N  I   L +S  K    +  K L    ++   K ++  YT+++  L +
Sbjct: 336 STVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCK 389


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 129/254 (50%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           +  +Y+ LM + +       A ++Y  + +  C+ +  TY ++I    K G    A+++ 
Sbjct: 107 NVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVL 166

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             ++++  +P    + +++ +  ++G+ + +++VY  M   G +P+A  Y +LI +Y K 
Sbjct: 167 DALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKT 226

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           GK++ ALR++ +M   G   N   ++ +I +  K+G+  +A+ +  +M R    P   T+
Sbjct: 227 GKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTF 286

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + LL   A  GQ  +A  ++  M S G +P   +Y  L++   +      A + L EM+ 
Sbjct: 287 NALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQG 346

Query: 509 MGYSVDVSASDVLM 522
            G+  DV   +V++
Sbjct: 347 QGHRPDVGVYNVVI 360



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 137/281 (48%), Gaps = 1/281 (0%)

Query: 222 EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           E+V +   +G+      Y+ ++    KA++LE++   + ++L   C  +  +YN+L+ + 
Sbjct: 94  ELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIH 153

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   +A ++ +++E      +  TY  ++ +  +SG+ + A+++++ M     +P+ 
Sbjct: 154 GKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTA 213

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
             + +L+ + GK G+++ +++++ +M   G   +   Y SLI +  KAG+   AL L DE
Sbjct: 214 TTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDE 273

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           M     +PN   F  ++ + A+ G+   A  +F  M   G  P   +Y+ L+       Q
Sbjct: 274 MHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQ 333

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
              A++  + M   G RP +  Y  ++  L +  ++    K
Sbjct: 334 WCRALQALDEMQGQGHRPDVGVYNVVIEALTRSGVLSAQLK 374



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 158/352 (44%), Gaps = 8/352 (2%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           D  +Y  +++   +     KA E+   M       +  TY  ++    K+  L+ A+ ++
Sbjct: 72  DVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
            ++      P+   +  L+D  GK G    +++V   ++  G +P    Y +++ +  ++
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRS 191

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G+ + ALR+++ M   G +P    +T +I ++ K+GK++ A+ IF DM R G      TY
Sbjct: 192 GQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITY 251

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           S L+     +G+   A++L + M     +P   T+ ALL+  A+      A  +  +M +
Sbjct: 252 SSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPS 311

Query: 509 MGYSVDVSASDVLMVYIKDGSV-DHALRWLRFMGSSGIRTN----NFIVRQLFESCMKNA 563
            G   D  +  +L+     G+    AL+ L  M   G R +    N ++  L  S + +A
Sbjct: 312 CGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTRSGVLSA 371

Query: 564 LYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615
             ++A+       +   + D       L  +V  +D   E  +M +L  TKH
Sbjct: 372 QLKAAQIFQAATRQGQLRCDAASANLPLPAIVS-KDTVREEPVMVLL--TKH 420



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 134/301 (44%), Gaps = 7/301 (2%)

Query: 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMK------ERNFRPSFNIFASLVDSMGKAGRL 356
           LD      ++  L K G  + A +LF  ++      E         + +++   G   +L
Sbjct: 30  LDSRALAALLKELHKVGLSNRASELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQL 89

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             ++++  EM+G G   +   Y +L+    KA +L+ AL ++ ++   G  PN   + ++
Sbjct: 90  RKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNIL 149

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I+ H K G    A+ +   +E  G  P   TY+ +L     SGQ + A+++Y  M + G 
Sbjct: 150 IDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGA 209

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALR 535
           +P  +TYTAL++   K   ++ A +I  +M   G   +V + S ++    K G    AL 
Sbjct: 210 QPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALE 269

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            L  M     + N      L  +C +   +++A+ + E       K D V Y  +++   
Sbjct: 270 LLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFD 329

Query: 596 R 596
           R
Sbjct: 330 R 330



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 122/245 (49%), Gaps = 6/245 (2%)

Query: 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESM----EKGECS--LDGSTYELMIPSLAKSGRL 321
           +D+++   L+      GL  +A E+++ +    +  E +   D  TY  +I       +L
Sbjct: 30  LDSRALAALLKELHKVGLSNRASELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQL 89

Query: 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381
             A++L  EM+      + + +++L++   KA  L+ ++ VY ++   G  P+   Y  L
Sbjct: 90  RKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNIL 149

Query: 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
           I+ + K G    A+++ D +   G +P    +  I+ +  +SG+ + A+ ++  M   G 
Sbjct: 150 IDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGA 209

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            PT +TY+ L+  +  +G+++ A++++  M   G    + TY++L++   K     +A +
Sbjct: 210 QPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALE 269

Query: 502 ILLEM 506
           +L EM
Sbjct: 270 LLDEM 274



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 95/197 (48%), Gaps = 3/197 (1%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  +    N S   +  L +++ M+ D ++   + ++A   +I    K  K+E +   F+
Sbjct: 181 YNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTA---LISAYGKTGKIEEALRIFQ 237

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            ++   C+ +  +Y+ L++     G    A E+ + M +  C  +  T+  ++ + A+ G
Sbjct: 238 DMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGG 297

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           +  AA  +F++M     +P    +A L+ +  +  +   +++   EMQG GHRP   +Y 
Sbjct: 298 QWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYN 357

Query: 380 SLIESYAKAGKLDTALR 396
            +IE+  ++G L   L+
Sbjct: 358 VVIEALTRSGVLSAQLK 374


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 3/294 (1%)

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
           + L +EMV ++    I     Y  ++  L K  K++ +      ++ +   +D   Y+ L
Sbjct: 253 IDLLNEMVLENINPDIY---TYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTL 309

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336
           M  +        A  ++ +M +   + D   Y +MI  L K  R+D A+ LF+E+ ++N 
Sbjct: 310 MDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNM 369

Query: 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396
            P    + SL+D + K+GR+     ++ EM   G  P    Y +LI++  K G LD A+ 
Sbjct: 370 VPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIA 429

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
           L+++M+    RPN   FT++++   K G+L  A+  F D+   G+     TY+ ++    
Sbjct: 430 LFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLC 489

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510
             G +D A+ L + M   G      T+  ++     +   D A K++ EM   G
Sbjct: 490 KEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARG 543



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 165/359 (45%), Gaps = 1/359 (0%)

Query: 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298
           N +I       ++ +++    K+L    + +T + N LM     +G   +A   ++ +  
Sbjct: 97  NIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLA 156

Query: 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358
               L G +Y ++I  + K G   AAI+L + ++  + RP+  I++ ++D + K   +D 
Sbjct: 157 QGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDE 216

Query: 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE 418
           +  +Y EM G G  P    Y  L+  +   G+L+ A+ L +EM +    P+   +T++++
Sbjct: 217 AYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVD 276

Query: 419 SHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP 478
           +  K GK+  A ++   M +A        YS L++ +    +V++A +++ +MT  G+ P
Sbjct: 277 ALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTP 336

Query: 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL 537
            +  Y+ ++  L K K VD A  +  E+       D V+ + ++    K G + +     
Sbjct: 337 DVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLF 396

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
             M   G   +      L ++  KN   + A  L     + A + ++  +T +L  L +
Sbjct: 397 DEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCK 455



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 153/325 (47%), Gaps = 5/325 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y+ +I  L K   ++ +Y  + +++      D  +Y++L++ F   G   +A ++   M 
Sbjct: 201 YSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMV 260

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               + D  TY +++ +L K G++  A  +   M +        ++++L+D       ++
Sbjct: 261 LENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVN 320

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + +V+  M   G  P    Y  +I    K  ++D AL L++E+      P+   +T +I
Sbjct: 321 NAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLI 380

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           +   KSG++     +F +M   G  P   TY+ L++    +G +D A+ L+N M    +R
Sbjct: 381 DCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIR 440

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P + T+T LL  L K   +  A +   ++ T GY ++V    V++  + K+G +D AL  
Sbjct: 441 PNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALAL 500

Query: 537 LRFMGSSGIRTN----NFIVRQLFE 557
              M  +G  ++      ++R  F+
Sbjct: 501 QSRMEDNGCISDAVTFEIMIRAFFD 525



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 168/375 (44%), Gaps = 9/375 (2%)

Query: 174 INDSDTSLSLFRWAKRQSWYV-PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI 232
           I ++  ++ L R  +R  W + P    Y M+ D L +    D    L+ EMV      GI
Sbjct: 176 IGETRAAIRLLRRIER--WSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMV----GKGI 229

Query: 233 SL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291
           S     Y+ ++       +L  +     +++  +   D  +Y +L+     +G   +A  
Sbjct: 230 SPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAEN 289

Query: 292 IYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           +   M K   +LD   Y  ++        ++ A ++F  M +    P  + ++ +++ + 
Sbjct: 290 VLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLC 349

Query: 352 KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFG 411
           K  R+D ++ ++ E+      P    Y SLI+   K+G++     L+DEM   G  P+  
Sbjct: 350 KIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVI 409

Query: 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +  +I++  K+G LD A+++F  M+     P   T++ LL+     G++ +A++ +  +
Sbjct: 410 TYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDL 469

Query: 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSV 530
            + G    + TYT ++  L K  L+D A  +   M+  G   D    ++++  +      
Sbjct: 470 LTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDEN 529

Query: 531 DHALRWLRFMGSSGI 545
           D A + +R M + G+
Sbjct: 530 DKAEKLVREMIARGL 544



 Score = 99.4 bits (246), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 139/323 (43%), Gaps = 2/323 (0%)

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
           +L++L   K  P  A  +Y+ ME  E   D  T  ++I      G++  A     ++ + 
Sbjct: 64  ILISLVNVKRYP-TAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKL 122

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
            ++P+     +L+  +   G++  +++ + ++   G R S   Y  LI    K G+   A
Sbjct: 123 GYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAA 182

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           +RL   +     RPN  +++MII+   K   +D A  ++T+M   G  P   TYS L+  
Sbjct: 183 IRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSG 242

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
               GQ++ A+ L N M    + P + TYT L+  L K   V  A  +L  M     ++D
Sbjct: 243 FCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLD 302

Query: 515 VSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           V     LM  Y     V++A R    M   G+  +      +     K    + A  L E
Sbjct: 303 VVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFE 362

Query: 574 TYVESAAKVDLVLYTSVLAHLVR 596
              +     D V YTS++  L +
Sbjct: 363 EIHQKNMVPDTVTYTSLIDCLCK 385



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 2/207 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y+ +I  L K  +++ +   F+++   +   DT +Y  L+      G     +++++ M
Sbjct: 340 CYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEM 399

Query: 297 -EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
            ++G+   D  TY  +I +L K+G LD AI LF +MK++  RP+   F  L+D + K GR
Sbjct: 400 LDRGQ-PPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGR 458

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
           L  +++ + ++   G+  +   Y  +I    K G LD AL L   M   G   +   F +
Sbjct: 459 LKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEI 518

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFL 442
           +I +     + D A  +  +M   G L
Sbjct: 519 MIRAFFDKDENDKAEKLVREMIARGLL 545


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 169/378 (44%), Gaps = 25/378 (6%)

Query: 160 FVPKMVHITQALKVINDS---DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
           FVP     ++ +  + ++   + +  LF+  K  +  VP    Y +L D  +++      
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEMK-GTGVVPDVYTYTILIDCFSKAGIIKQA 543

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
            +  DEMV D  +  +     Y  +I    KA K+ ++   F+ ++   C  +  +Y  L
Sbjct: 544 HNWLDEMVRDGCEPTVV---TYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTAL 600

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSL-----------------DGSTYELMIPSLAKSG 319
           +  +   G   KA +IY  M +G+  +                 +  TY  ++  L K+ 
Sbjct: 601 IDGYCKSGNIEKACQIYARM-RGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAH 659

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           ++  A  L + M      P+  ++ +L+D   KA +LD + +V+ +M   G+ P+   Y 
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYS 719

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SLI+   K  +LD  L++  +M      PN  ++T +I+  +K  K D A  +   ME  
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   TY+ +++    +G+VD  ++L+  M S G  P   TYT L+        +D A
Sbjct: 780 GCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEA 839

Query: 500 AKILLEMKTMGYSVDVSA 517
             +L EMK   +   VS+
Sbjct: 840 YALLEEMKQTYWPKHVSS 857



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 127/571 (22%), Positives = 232/571 (40%), Gaps = 57/571 (9%)

Query: 142 VNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAK------RQSWYVP 195
           V +W+   E  + ++K  FVP  +   + +  + ++    S F  A       R +  +P
Sbjct: 289 VGKWR---EALSLIEKEDFVPNTILYNKMISGLCEA----SFFEEAMDFLNRMRSTSCIP 341

Query: 196 GDECY-VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
             + Y ++L   LN+ +       +   M+ +      ++F   N ++    K+D    +
Sbjct: 342 NVQTYRILLCGCLNK-KQLGRCKRILSMMIAEGCYPSYTIF---NSLVHAYCKSDDFSYA 397

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKG-LPYK-AFEIYESMEKGECSLDGSTYELMI 312
           Y   KK+   +CK     YN+L+    + G LP    FE+ E       S      ++ +
Sbjct: 398 YKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNV 457

Query: 313 PSLAKS----GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            S A+     G+ + A K+  EM    F P  + ++ ++  +  A R++ +  ++ EM+G
Sbjct: 458 VSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKG 517

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P    Y  LI+ ++KAG +  A    DEM   G  P    +T +I ++ K+ K+ +
Sbjct: 518 TGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSV 577

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM----------------T 472
           A  +F  M   G  P   TY+ L++ +  SG ++ A ++Y  M                 
Sbjct: 578 ANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKN 637

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
           +   +P + TY AL+  L K   V  A  +L  M   G   +    D L+  + K   +D
Sbjct: 638 NVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLD 697

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A      M   G   N +    L +   K+   +    +L   +E++   ++V+YT ++
Sbjct: 698 EAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMI 757

Query: 592 AHLVRCQDEQNERHLMAILSATKHKAH-----AFLCGLFTGPEQRKQPVLSFVREFFHGI 646
             L +         LM ++     K +     A + G   G   +    L   RE     
Sbjct: 758 DGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGF--GKAGKVDKCLELFREMG--- 812

Query: 647 DYELEEGAARYFV--NVLLNYLVLMGQINRA 675
                +G A  FV   VL+N+    G ++ A
Sbjct: 813 ----SKGCAPNFVTYTVLINHCCATGHLDEA 839



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 135/277 (48%), Gaps = 2/277 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++  L KA K++ +    + +    C+ +T  Y+ L+  F       +A E++  M
Sbjct: 647 TYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKM 706

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   + +  TY  +I  L K  RLD  +K+  +M E +  P+  I+  ++D + K  + 
Sbjct: 707 VEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKT 766

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + K+ + M+  G +P+   Y ++I+ + KAGK+D  L L+ EM   G  PNF  +T++
Sbjct: 767 DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVL 826

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I     +G LD A ++  +M++  +    S+Y  ++E +    +   ++ L   +   G 
Sbjct: 827 INHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKR--EFILSLGLLEEVEKNGS 884

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            P +  Y  L+    K   ++VA ++  E+ +   S+
Sbjct: 885 APIILLYKVLIDNFVKAGRLEVALELHKEVISASMSM 921



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 111/531 (20%), Positives = 200/531 (37%), Gaps = 87/531 (16%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDV-------------LNESR-- 211
           + + L  +   +  +  F WA RQ  Y      Y+ L DV             L E R  
Sbjct: 141 VVEILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGD 200

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFS-----------------AYNRVIQYLAKADKLEMS 254
           D + +  L + ++    +NG+   +                  YN ++Q   +ADKL+ +
Sbjct: 201 DKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTA 260

Query: 255 YCCFKKV----LDSD-----------CKI-----------------DTQSYNVLMTLFLN 282
               +++    L  D           CK+                 +T  YN +++    
Sbjct: 261 QLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCE 320

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
                +A +    M    C  +  TY +++       +L    ++   M      PS+ I
Sbjct: 321 ASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTI 380

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL------DTALR 396
           F SLV +  K+     + K+  +M+ C  +P   +Y  LI S    G+L      + A +
Sbjct: 381 FNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEK 440

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
            ++EM  AG   N              GK + A  +  +M   GF+P  STYS ++    
Sbjct: 441 AYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLC 500

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDV 515
           ++ +V++A  L+  M   G+ P + TYT L+   +K  ++  A   L EM   G     V
Sbjct: 501 NASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVV 560

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK------ 569
           + + ++  Y+K   V  A      M + G   N      L +   K+   E A       
Sbjct: 561 TYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARM 620

Query: 570 ------PLLETYVE----SAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
                 P ++ Y +     A K ++V Y +++  L +    ++ R L+  +
Sbjct: 621 RGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETM 671



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 38/260 (14%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y P    Y  L D L + +  D +L +  +M+ +S    I +   Y  +I  L+K  K +
Sbjct: 711 YNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVI---YTEMIDGLSKVAKTD 767

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +Y     + +  CK +  +Y  ++  F   G   K  E++  M    C+ +  TY ++I
Sbjct: 768 EAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLI 827

Query: 313 PSLAKSGRLDAAIKLFQEMKE------------------RNF---------------RPS 339
                +G LD A  L +EMK+                  R F                P 
Sbjct: 828 NHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPI 887

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAP--MYVSLIESYAKAGKLDTALRL 397
             ++  L+D+  KAGRL+ +++++ E+       +A   +Y SLI S++ A K+  A  L
Sbjct: 888 ILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFEL 947

Query: 398 WDEMRIAGFRPNFGLFTMII 417
           + +M   G  P+ G F  ++
Sbjct: 948 FYDMIRDGVIPDLGTFVHLL 967



 Score = 45.4 bits (106), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 23/217 (10%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  + D   ++   D  L LF EM    SK     F  Y  +I +      L+ +
Sbjct: 783 PNVVTYTAMIDGFGKAGKVDKCLELFREM---GSKGCAPNFVTYTVLINHCCATGHLDEA 839

Query: 255 YCCFK--------KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306
           Y   +        K + S CK+  + Y     L L          + E +EK   +    
Sbjct: 840 YALLEEMKQTYWPKHVSSYCKV-IEGYKREFILSLG---------LLEEVEKNGSAPIIL 889

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEM--KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364
            Y+++I +  K+GRL+ A++L +E+     +     N++ SL+ S   A ++  + +++ 
Sbjct: 890 LYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFY 949

Query: 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
           +M   G  P    +V L+    +  + + AL+L D +
Sbjct: 950 DMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSL 986


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 173/373 (46%), Gaps = 12/373 (3%)

Query: 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYES-MEKGECSLDGS 306
           A+ L+ S     K  +  C+++  +YN LM+  + +G  +    ++E  ++    S D  
Sbjct: 24  ANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVW 83

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           ++ ++I  + + G++  A++L + M E    P       LVD + +   +    +V   +
Sbjct: 84  SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRL 143

Query: 367 QGCG-HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           Q  G   P+   + S+I  Y KAGKL+ A+ ++++M  +G  PN   + ++I  + K G 
Sbjct: 144 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 203

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           L  A+ ++  M R    P   T+S L++ +   GQ+D A+++++ M    ++P + T++ 
Sbjct: 204 LGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSI 263

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-----SDVLMVYIKDGSVDHALRWLRFM 540
           ++  L K+   D A  +L E+       D++      + V+ V  K G VD A    + M
Sbjct: 264 IIHSLCKQNRSDEAIGLLNELN---LRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGM 320

Query: 541 GSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
              G R + +    L    CMK+ + E A       VE+    D +     ++ L++   
Sbjct: 321 EEKGCRPDKYTYTILIIGYCMKSRISE-AIMFFHEMVEAGCSPDSITVNCFISCLLKAGM 379

Query: 600 EQNERHLMAILSA 612
                H+M + S 
Sbjct: 380 PNEVDHVMRLASG 392



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 12/262 (4%)

Query: 222 EMVHDSSKNGISL--FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           E++    ++G+ +     +  VI    KA KLE +   +  ++ S    +T +YNVL+  
Sbjct: 138 EVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLING 197

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           +   G    A E+Y+ M +  C  D  T+  +I    + G+LD A++++ +M +   +P+
Sbjct: 198 YGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPN 257

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS-AP---MYVSLIESYAKAGKLDTAL 395
              F+ ++ S+ K  R D ++ +  E+     RP  AP   +Y  +I+   K GK+D A 
Sbjct: 258 VYTFSIIIHSLCKQNRSDEAIGLLNELN---LRPDIAPQAFIYNPVIDVLCKCGKVDEAN 314

Query: 396 RLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455
            +   M   G RP+   +T++I  +    ++  A+  F +M  AG  P   T +C +   
Sbjct: 315 LIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCL 374

Query: 456 ASSG---QVDSAMKLYNSMTSA 474
             +G   +VD  M+L +   S+
Sbjct: 375 LKAGMPNEVDHVMRLASGGASS 396


>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 484

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/483 (20%), Positives = 197/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L    +S+ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHGAKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SY+ 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + + +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL--R 477
           H K G LD A  +   M R         Y  L+E +  +GQ D A+KL + +    +  R
Sbjct: 301 HCKVGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDIIVR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHMEPSAYNPIVEYLCNNGQTSKAEALVRQLMKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K +    AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYDSLVQSYLKKSEPADAKAALDSMIENDHLPDSSLFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 177/390 (45%), Gaps = 10/390 (2%)

Query: 216 MLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274
           M  LFD M+ D    GI+ +   +N +I+  A    L+ +   F ++ D   K +  +Y 
Sbjct: 378 MTDLFDLMLGD----GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYT 433

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334
            ++      G    A E +  M     + D   Y  +I      G L  A +L  E+   
Sbjct: 434 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN 493

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394
                  +F+S+++++ K GR+  +  ++      G  P+A +Y  L++ Y   GK++ A
Sbjct: 494 GMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKA 553

Query: 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454
           LR++D M  AG  PN  ++  ++  + K G++D  +S+F +M + G  P+   Y+ +++ 
Sbjct: 554 LRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 613

Query: 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
              +G+   A   ++ MT +G+     TY+ +L  L K +  D A  +  E++ M   +D
Sbjct: 614 LFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKID 673

Query: 515 VSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573
           +   + ++    +   V+ A      +  SG+         +  + +K  L E A+ +  
Sbjct: 674 IITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFS 733

Query: 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603
           +   +  + D    + +L H+VR   ++NE
Sbjct: 734 SMQNAGCEPD----SRLLNHVVRELLKKNE 759



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 174/380 (45%), Gaps = 11/380 (2%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           +N ++  L K  K++ +   F  +       D  SYN+++  +  KG      ++++ M 
Sbjct: 327 FNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML 386

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
               +    T+ ++I + A  G LD A+ +F EM++   +P+   + +++ ++ + G++D
Sbjct: 387 GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMD 446

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +M+ + +M   G  P    Y  LI+ +   G L  A  L  E+   G   +  LF+ II
Sbjct: 447 DAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSII 506

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
            +  K G++  A +IF      G  PT   YS L++ +   G+++ A++++++M SAG+ 
Sbjct: 507 NNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE 566

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG------SVD 531
           P    Y  L+    K   +D    +  EM   G    +  S +L   I DG      +V 
Sbjct: 567 PNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKG----IKPSTILYNIIIDGLFEAGRTVP 622

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
             +++   M  SGI  N      +     KN  ++ A  L +       K+D++   +++
Sbjct: 623 AKVKFHE-MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMI 681

Query: 592 AHLVRCQDEQNERHLMAILS 611
           A + + +  +  + L A +S
Sbjct: 682 AGMFQTRRVEEAKDLFASIS 701



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 192/444 (43%), Gaps = 10/444 (2%)

Query: 157 KLQFVPKMVHITQALKVIND---SDTSLSLFRW-AKRQSWYVPGDECYVMLFDVLNESRD 212
           +L  VP +   +  LK + D   S  +  L R  A+  +   P    Y  + D   +  D
Sbjct: 175 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGD 234

Query: 213 FDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
            +    LF EMV    + GI   F  Y+ V+  L KA  ++ +    +++++     +  
Sbjct: 235 VNKACDLFKEMV----QRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNW 290

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN L+  + + G   +A  +++ M +     D  T+ +++ SL K G++  A  +F  M
Sbjct: 291 TYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTM 350

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
             +   P    +  +++     G L     ++  M G G  P    +  LI++YA  G L
Sbjct: 351 AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGML 410

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           D A+ +++EMR  G +PN   +T +I +  + GK+D AM  F  M   G  P    Y CL
Sbjct: 411 DKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCL 470

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           ++   + G +  A +L + + + G+   +  +++++  L K   V  A  I      +G 
Sbjct: 471 IQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGL 530

Query: 512 SVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
                   +LM  Y   G ++ ALR    M S+GI  N+ +   L     K    +    
Sbjct: 531 HPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLS 590

Query: 571 LLETYVESAAKVDLVLYTSVLAHL 594
           L    ++   K   +LY  ++  L
Sbjct: 591 LFREMLQKGIKPSTILYNIIIDGL 614



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 144/318 (45%), Gaps = 2/318 (0%)

Query: 222 EMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280
           E++ +   NG+ L    ++ +I  L K  ++  +   F   ++         Y++LM  +
Sbjct: 485 ELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGY 544

Query: 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340
              G   KA  ++++M       +   Y  ++    K GR+D  + LF+EM ++  +PS 
Sbjct: 545 CLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 604

Query: 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400
            ++  ++D + +AGR   +   + EM   G   +   Y  ++    K    D A+ L+ E
Sbjct: 605 ILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKE 664

Query: 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQ 460
           +R    + +      +I    ++ +++ A  +F  + R+G +P   TYS ++      G 
Sbjct: 665 LRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGL 724

Query: 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520
           V+ A  +++SM +AG  P       ++  L K+  +  A   L ++    +S++   + +
Sbjct: 725 VEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTML 784

Query: 521 LM-VYIKDGSVDHALRWL 537
           L+ ++   G+    +R+L
Sbjct: 785 LVDLFSSKGTCREHIRFL 802



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 64/333 (19%), Positives = 129/333 (38%), Gaps = 10/333 (3%)

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
           P++  Y  L++   +A + + AL  + ++   G R +  +   +++   ++ + D A+ I
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDI 168

Query: 433 FTD-MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LRPGLSTYTALLTL 489
                   G +P   +YS LL+     G+   A  L   M   G    P +  Y  ++  
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDG 228

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548
             K   V+ A  +  EM   G   D V+ S V+    K  ++D A  +LR M + G+  N
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPN 288

Query: 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMA 608
           N+    L         ++ A  + +     +   D+V +  ++  L +    +  R +  
Sbjct: 289 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFD 348

Query: 609 ILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV--NVLLNYL 666
            ++        F   +       K  ++     F    D  L +G A      NVL+   
Sbjct: 349 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF----DLMLGDGIAPVICTFNVLIKAY 404

Query: 667 VLMGQINRARCVWKVAYENKLFPKAIVFDQHIA 699
              G +++A  ++    ++ + P  + +   IA
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIA 437


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 162/360 (45%), Gaps = 1/360 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           +Y  +I    K  K+  +    K++     K + ++Y++L+  F++      AF I+E M
Sbjct: 428 SYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDM 487

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            K     D + Y L++ +  K G +D AI++F+ M++   +PS   F  +++    AG +
Sbjct: 488 IKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDM 547

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             +      M+  G  P+   Y +LI    +  +++ A+ + D+M IAG  PN   +T+I
Sbjct: 548 KRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTII 607

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           +  +A SG +  A   FT ++ +G       Y  LL     SG++ SA+ +   M+   +
Sbjct: 608 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 667

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHALR 535
                 Y  L+   A+R  V  AA +L +MK  G   ++   +  +    K G +  A  
Sbjct: 668 PRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAEN 727

Query: 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595
            ++ M   G++ N      L +   + +L + A    E    +  K D   Y  ++  L+
Sbjct: 728 VIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLL 787



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 184/424 (43%), Gaps = 7/424 (1%)

Query: 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL 234
           ND+ ++ +LF+ AK +      D    +++  +  +    G +   +E+V +  ++GI  
Sbjct: 335 NDAQSADNLFKEAKTKL-----DNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDA 389

Query: 235 -FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293
               Y+ ++         +     F+++ +   K    SY  L+ L++  G   KA  I 
Sbjct: 390 PIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAIS 449

Query: 294 ESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353
           + ME      +  TY ++I           A  +F++M +   +P   I+  LV++  K 
Sbjct: 450 KEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKM 509

Query: 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413
           G +D +++++  MQ    +PS   +  +IE +A AG +  A    D MR +G  P    +
Sbjct: 510 GNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTY 569

Query: 414 TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473
             +I    +  +++ A+S+   M  AG  P   TY+ ++  +A+SG +  A + +  +  
Sbjct: 570 NALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKE 629

Query: 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDH 532
           +GL+  +  Y  LL    K   +  A  +  EM       +    ++L+  + + G V  
Sbjct: 630 SGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWE 689

Query: 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
           A   L+ M   GI  N         +C K    + A+ +++   +   K ++  +T+++ 
Sbjct: 690 AADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIK 749

Query: 593 HLVR 596
              R
Sbjct: 750 GWAR 753



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 139/307 (45%), Gaps = 3/307 (0%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           +S   P    Y +L +   +  + D  + +F+ M  +  +     F     +I+  A A 
Sbjct: 489 KSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRP---IIEGFAVAG 545

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
            ++ ++     +  S C     +YN L+   + K    KA  + + M     + +  TY 
Sbjct: 546 DMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYT 605

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           +++   A SG +  A + F ++KE   +    I+ +L+ +  K+GR+ +++ V  EM   
Sbjct: 606 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 665

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
               +  +Y  LI+ +A+ G +  A  L  +M+  G  PN   FT  I +  K+G +  A
Sbjct: 666 KIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRA 725

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
            ++  +M   G  P   T++ L++  A     D A+K +  M SAGL+P  + Y  L+T 
Sbjct: 726 ENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTS 785

Query: 490 LAKRKLV 496
           L  R  V
Sbjct: 786 LLSRATV 792



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 135/318 (42%), Gaps = 10/318 (3%)

Query: 192 WYVPGDECYVMLFDVLNESR--DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249
           W+  G E     F  + ESR  D+  ++S F+ +   S +        +  ++ Y AK  
Sbjct: 214 WH-KGREDACREFRRVLESRPEDWQAVVSAFERIPKPSRRE-------FGLMVVYYAKRG 265

Query: 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309
               +   F+ +     + +   +  L+  +   G    A    E M+     +   TY 
Sbjct: 266 DKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYS 325

Query: 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369
           ++I    K+    +A  LF+E K +    +  I+++++ +  ++G +D + ++  EM+  
Sbjct: 326 ILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEED 385

Query: 370 GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429
           G      +Y S++  Y         L +++ ++  GF+P    +  +I  + K GK+  A
Sbjct: 386 GIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKA 445

Query: 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489
           ++I  +ME  G      TYS L+          +A  ++  M  +GL+P  + Y  L+  
Sbjct: 446 IAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEA 505

Query: 490 LAKRKLVDVAAKILLEMK 507
             K   +D A +I   M+
Sbjct: 506 FCKMGNMDRAIRIFERMQ 523


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 127/571 (22%), Positives = 232/571 (40%), Gaps = 57/571 (9%)

Query: 142 VNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAK------RQSWYVP 195
           V +W+   E  + ++K  FVP  +   + +  + ++    S F  A       R +  +P
Sbjct: 289 VGKWR---EALSLIEKEDFVPNTILYNKMISGLCEA----SFFEEAMDFLNRMRSTSCIP 341

Query: 196 GDECY-VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
             + Y ++L   LN+ +       +   M+ +      ++F   N ++    K+D    +
Sbjct: 342 NVQTYRILLCGCLNK-KQLGRCKRILSMMIAEGCYPSYTIF---NSLVHAYCKSDDFSYA 397

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKG-LPYK-AFEIYESMEKGECSLDGSTYELMI 312
           Y   KK+   +CK     YN+L+    + G LP    FE+ E       S      ++ +
Sbjct: 398 YKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNV 457

Query: 313 PSLAKS----GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
            S A+     G+ + A K+  EM    F P  + ++ ++  +  A R++ +  ++ EM+G
Sbjct: 458 VSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKG 517

Query: 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
            G  P    Y  LI+ ++KAG +  A    DEM   G  P    +T +I ++ K+ K+ +
Sbjct: 518 TGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSV 577

Query: 429 AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM----------------T 472
           A  +F  M   G  P   TY+ L++ +  SG ++ A ++Y  M                 
Sbjct: 578 ANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKN 637

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVD 531
           +   +P + TY AL+  L K   V  A  +L  M   G   +    D L+  + K   +D
Sbjct: 638 NVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLD 697

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A      M   G   N +    L +   K+   +    +L   +E++   ++V+YT ++
Sbjct: 698 EAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMI 757

Query: 592 AHLVRCQDEQNERHLMAILSATKHKAH-----AFLCGLFTGPEQRKQPVLSFVREFFHGI 646
             L +         LM ++     K +     A + G   G   +    L   RE     
Sbjct: 758 DGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGF--GKAGKVDKCLELFREMG--- 812

Query: 647 DYELEEGAARYFV--NVLLNYLVLMGQINRA 675
                +G A  FV   VL+N+    G ++ A
Sbjct: 813 ----SKGCAPNFVTYTVLINHCCATGHLDEA 839



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 169/378 (44%), Gaps = 25/378 (6%)

Query: 160 FVPKMVHITQALKVINDS---DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
           FVP     ++ +  + ++   + +  LF+  K  +  VP    Y +L D  +++      
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEMK-GTGVVPDVYTYTILIDCFSKAGIIKQA 543

Query: 217 LSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276
            +  DEMV D  +  +     Y  +I    KA K+ ++   F+ ++   C  +  +Y  L
Sbjct: 544 HNWLDEMVRDGCEPTVV---TYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTAL 600

Query: 277 MTLFLNKGLPYKAFEIYESMEKGECSL-----------------DGSTYELMIPSLAKSG 319
           +  +   G   KA +IY  M +G+  +                 +  TY  ++  L K+ 
Sbjct: 601 IDGYCKSGNIEKACQIYARM-RGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAH 659

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
           ++  A  L + M      P+  ++ +L+D   KA +LD + +V+ +M   G+ P+   Y 
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYS 719

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           SLI+   K  +LD  L++  +M      PN  ++T +I+  +K  K D A  +   ME  
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P   TY+ +++    +G+VD  ++L+  M S G  P   TYT L+        +D A
Sbjct: 780 GCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEA 839

Query: 500 AKILLEMKTMGYSVDVSA 517
             +L EMK   +   VS+
Sbjct: 840 YALLEEMKQTYWPKHVSS 857



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 146/312 (46%), Gaps = 5/312 (1%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  ++  L KA K++ +    + +    C+ +T  Y+ L+  F       +A E++  M
Sbjct: 647 TYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKM 706

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
            +   + +  TY  +I  L K  RLD  +K+  +M E +  P+  I+  ++D + K  + 
Sbjct: 707 VERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKT 766

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
           D + K+ + M+  G +P+   Y ++I+ + KAGK+D  L L+ EM   G  PNF  +T++
Sbjct: 767 DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVL 826

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I     +G LD A ++  +M++  +    S+Y  ++E +    +   ++ L   +   G 
Sbjct: 827 INHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKR--EFILSLGLLEEVEKNGS 884

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA---SDVLMVYIKDGSVDHA 533
            P +  Y  L+    K   ++VA ++  E+ +   S+       + ++  +     +DHA
Sbjct: 885 APTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHA 944

Query: 534 LRWLRFMGSSGI 545
                 M   G+
Sbjct: 945 FELFYDMIRDGV 956



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 132/281 (46%), Gaps = 7/281 (2%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y P    Y  L D L + +  D +L +  +M+ +S    I +   Y  +I  L+K  K +
Sbjct: 711 YNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVI---YTEMIDGLSKVAKTD 767

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +Y     + +  CK +  +Y  ++  F   G   K  E++  M    C+ +  TY ++I
Sbjct: 768 EAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLI 827

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
                +G LD A  L +EMK+  +    + +  +++  G       S+ +  E++  G  
Sbjct: 828 NHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIE--GYKREFILSLGLLEEVEKNGSA 885

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR--PNFGLFTMIIESHAKSGKLDIAM 430
           P+  +Y  LI+++ KAG+L+ AL L  E+  A         L+T +I S + + K+D A 
Sbjct: 886 PTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAF 945

Query: 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471
            +F DM R G +P   T+  LL       + + A++L +S+
Sbjct: 946 ELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSL 986



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 111/531 (20%), Positives = 200/531 (37%), Gaps = 87/531 (16%)

Query: 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDV-------------LNESR-- 211
           + + L  +   +  +  F WA RQ  Y      Y+ L DV             L E R  
Sbjct: 141 VVEILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGD 200

Query: 212 DFDGMLSLFDEMVHDSSKNGISLFS-----------------AYNRVIQYLAKADKLEMS 254
           D + +  L + ++    +NG+   +                  YN ++Q   +ADKL+ +
Sbjct: 201 DKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTA 260

Query: 255 YCCFKKV----LDSD-----------CKI-----------------DTQSYNVLMTLFLN 282
               +++    L  D           CK+                 +T  YN +++    
Sbjct: 261 QLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCE 320

Query: 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342
                +A +    M    C  +  TY +++       +L    ++   M      PS+ I
Sbjct: 321 ASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTI 380

Query: 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL------DTALR 396
           F SLV +  K+     + K+  +M+ C  +P   +Y  LI S    G+L      + A +
Sbjct: 381 FNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEK 440

Query: 397 LWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456
            ++EM  AG   N              GK + A  +  +M   GF+P  STYS ++    
Sbjct: 441 AYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLC 500

Query: 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDV 515
           ++ +V++A  L+  M   G+ P + TYT L+   +K  ++  A   L EM   G     V
Sbjct: 501 NASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVV 560

Query: 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK------ 569
           + + ++  Y+K   V  A      M + G   N      L +   K+   E A       
Sbjct: 561 TYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARM 620

Query: 570 ------PLLETYVE----SAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610
                 P ++ Y +     A K ++V Y +++  L +    ++ R L+  +
Sbjct: 621 RGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETM 671


>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37230-like [Cucumis sativus]
          Length = 760

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/500 (21%), Positives = 202/500 (40%), Gaps = 45/500 (9%)

Query: 138 IVEVVNRWKWGPELETQLDKLQFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVP 195
           I +++   +W   L+  +  L  VP+  H  +   L     S+ +L+ FRW +R   +  
Sbjct: 95  ICKMMANREWTTRLQNSIRSL--VPQFDHNLVYNVLHAAKKSEHALNFFRWVERAGLFQH 152

Query: 196 GDECYVMLFDVLNESRDFDGML---------------SLFDEMVHDSSKNGI-----SLF 235
             E +  + ++L  +   +                   LF  ++    K GI      +F
Sbjct: 153 DRETHFKIIEILGRASKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIF 212

Query: 236 S------------AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
                        +Y+ + + + +  +  M+   F  +L+   +    +YNV++  F   
Sbjct: 213 QKMKELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLS 272

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
                A   YE M+    S D  TY  MI    +   ++ A + F EMK +N  P+   +
Sbjct: 273 LRLETAKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISY 332

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +++       R D +++++ EM+  G +P+   Y +L+     A KL  A ++  EM  
Sbjct: 333 TTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVT 392

Query: 404 AGFRP-NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             F P +  +F  ++    K G LD AM +   M R         Y  L+E    +G  D
Sbjct: 393 RHFAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYD 452

Query: 463 SAMKLYNSMTSAG--LRPG------LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
            A+KL  ++      LRP        S Y  ++  L        A     ++   G   +
Sbjct: 453 QAVKLLENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDE 512

Query: 515 VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
           V+ ++++  + K+G+ D A   L+ MG  G+  +    + L +S +       AK  L++
Sbjct: 513 VAFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDS 572

Query: 575 YVESAAKVDLVLYTSVLAHL 594
            +E+    D  L+ SV+  L
Sbjct: 573 MIENGHSPDSALFRSVMESL 592



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 124/321 (38%), Gaps = 43/321 (13%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    +   +E +   F ++   +      SY  ++  +++      A  ++E M+
Sbjct: 297 YNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMK 356

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN-IFASLVDSMGKAGRL 356
                 +  TY  ++P L  + +L  A K+  EM  R+F P  N IF  L+    K G L
Sbjct: 357 AAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRLLSCQCKHGDL 416

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD---------------EM 401
           D +M V   M        A  Y  LIE+  KAG  D A++L +               EM
Sbjct: 417 DAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEM 476

Query: 402 RIAGFR------PNFG---------------------LFTMIIESHAKSGKLDIAMSIFT 434
             + +        N G                      F  +I  HAK G  D+A  +  
Sbjct: 477 EASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFNNLIRGHAKEGNPDLAFEMLK 536

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M R G      +Y  L++ + S G+   A    +SM   G  P  + + +++  L    
Sbjct: 537 IMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSALFRSVMESLFADG 596

Query: 495 LVDVAAKILLEMKTMGYSVDV 515
            V  A++++  M   G + ++
Sbjct: 597 RVQTASRVMNSMLDKGITENL 617



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 150/376 (39%), Gaps = 25/376 (6%)

Query: 144 RWKWGPELE---TQLDKLQFVPKMVHITQALK---VINDSDTSLSLFRWAKRQSWYVPGD 197
           R+K   E E   T++      P ++  T  +K    ++ +D +L LF   K  +   P D
Sbjct: 306 RFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMK-AAGEKPND 364

Query: 198 ECYVMLFDVLNESRDFDGMLSLFDEMV--HDSSKNGISLFSAYNRVIQYLAKADKLEMSY 255
             Y  L   L ++        +  EMV  H + K+     S + R++    K   L+ + 
Sbjct: 365 ITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDN----SIFMRLLSCQCKHGDLDAAM 420

Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC--------SLDGST 307
              K ++      +   Y +L+      G+  +A ++ E++ + E          ++ S 
Sbjct: 421 HVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASA 480

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y L+I  L   G+   A   F+++ ++  +     F +L+    K G  D + ++   M 
Sbjct: 481 YNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEV-AFNNLIRGHAKEGNPDLAFEMLKIMG 539

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G    A  Y  LI+SY   G+   A    D M   G  P+  LF  ++ES    G++ 
Sbjct: 540 RRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSALFRSVMESLFADGRVQ 599

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A  +   M   G        + +LE     G  + A+   N + +    P    + +LL
Sbjct: 600 TASRVMNSMLDKGITENLDLVAKILEALFMRGHDEEALGRINLLMNCNCPP---DFNSLL 656

Query: 488 TLLAKRKLVDVAAKIL 503
           ++L ++     A K+L
Sbjct: 657 SVLCEKGKTTSAFKLL 672



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 96/213 (45%), Gaps = 4/213 (1%)

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           K GI    A+N +I+  AK    ++++   K +       D +SY +L+  +L+KG P  
Sbjct: 506 KKGIQDEVAFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPAD 565

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A    +SM +   S D + +  ++ SL   GR+  A ++   M ++    + ++ A +++
Sbjct: 566 AKTALDSMIENGHSPDSALFRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILE 625

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
           ++   G  + ++     +  C      P + SL+    + GK  +A +L D         
Sbjct: 626 ALFMRGHDEEALGRINLLMNCN---CPPDFNSLLSVLCEKGKTTSAFKLLDFGLERECNI 682

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTD-MERAG 440
            F  +  ++++   +GK   A +I    ME+ G
Sbjct: 683 EFSSYEKVLDALLGAGKTLNAYAILCKIMEKGG 715


>gi|297804088|ref|XP_002869928.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315764|gb|EFH46187.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 731

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/459 (22%), Positives = 191/459 (41%), Gaps = 70/459 (15%)

Query: 143 NRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVM 202
           NR  WGP + ++L+KL+ V   + + + LK+ ND+  +   F WA +Q  Y      Y  
Sbjct: 109 NRNHWGPSVVSELNKLRRVTPSI-VAEVLKLGNDATAAAKFFHWAGKQKGYKHDFAAYNA 167

Query: 203 LFDVLNESRDF---DGMLSLFDEM--------------VHDSSKNGISLFSAY------- 238
               LN +  F   D +  L D                +H  ++ G+ ++  Y       
Sbjct: 168 FAYCLNRNGHFRAADQLPELMDSQGRPPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFG 227

Query: 239 --------NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAF 290
                   NR++  L K    +++   ++   +     ++ ++ +L+      G   +  
Sbjct: 228 FKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEML 287

Query: 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350
           EI + M +  C  D   Y  MI +L   G LDA+++++ EMK    +P    + +LV  +
Sbjct: 288 EILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMKRDEIKPDVMAYGTLVVGL 347

Query: 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF 410
            K GR++   +++MEM+G        +Y  LIE +   GK+ +A  LW ++  +G+  + 
Sbjct: 348 CKDGRIERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACDLWKDLVDSGYIADL 407

Query: 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP-----TP-----------STYSCLLE- 453
           G++  +I+      ++D A ++F         P     +P           S +S LLE 
Sbjct: 408 GIYNAVIKGLCSVNQVDKAYNLFQVAIEEELEPDFETLSPIMVAYVVMNRLSDFSNLLER 467

Query: 454 ------------------MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
                             + A   +   A+ +++ + + G    +S Y  L+ +L K   
Sbjct: 468 IGELGYPVTDYLTQFFKLLCADEEKRTMALDVFDILKTKG-HGSVSVYNILMEVLYKMGD 526

Query: 496 VDVAAKILLEMKTMGYSVDVSA-SDVLMVYIKDGSVDHA 533
           +  +  +  EMK  G+  D S+ S  L  ++  G V  A
Sbjct: 527 IQKSLSLFYEMKEFGFEPDSSSYSIALCCFVDKGDVQEA 565



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/416 (20%), Positives = 168/416 (40%), Gaps = 26/416 (6%)

Query: 189 RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248
           R++   P    Y  +   L    + D  L ++DEM  D  K  +    AY  ++  L K 
Sbjct: 294 RENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMKRDEIKPDVM---AYGTLVVGLCKD 350

Query: 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY 308
            ++E  Y  F ++      ID + Y VL+  F+  G    A ++++ +       D   Y
Sbjct: 351 GRIERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACDLWKDLVDSGYIADLGIY 410

Query: 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368
             +I  L    ++D A  LFQ   E    P F   + ++ +     RL     +   +  
Sbjct: 411 NAVIKGLCSVNQVDKAYNLFQVAIEEELEPDFETLSPIMVAYVVMNRLSDFSNLLERIGE 470

Query: 369 CGHRPSAPMYVSLIESY----AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424
            G+    P+   L + +    A   K   AL ++D ++  G   +  ++ +++E   K G
Sbjct: 471 LGY----PVTDYLTQFFKLLCADEEKRTMALDVFDILKTKG-HGSVSVYNILMEVLYKMG 525

Query: 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484
            +  ++S+F +M+  GF P  S+YS  L      G V  A   +  +      P  + Y 
Sbjct: 526 DIQKSLSLFYEMKEFGFEPDSSSYSIALCCFVDKGDVQEACSCHEKIIEMSRVPSKAAYL 585

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-------KDGSVDHALRWL 537
           +L   L   ++ ++ A +LL  + +G   +V +  +   Y+       K  + +  +  +
Sbjct: 586 SLTKGLC--QIGEIDAVMLLVRECLG---NVESGPMEFKYVLRVCHVCKGSNAEKVMEVV 640

Query: 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESA--AKVDLVLYTSVL 591
             M   G+  N  I   +     K+   ++A+ +     +     + D+V+Y  +L
Sbjct: 641 DEMNQEGVSINEVIYCAIISGMSKHGTIKAAREVFAELKKRKVMTEADMVVYDEML 696



 Score = 44.7 bits (104), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 60/336 (17%), Positives = 135/336 (40%), Gaps = 42/336 (12%)

Query: 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNG-ISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261
           ++ VL E    DG +    ++  D   +G I+    YN VI+ L   ++++ +Y  F+  
Sbjct: 374 IYRVLIEGFVADGKVRSACDLWKDLVDSGYIADLGIYNAVIKGLCSVNQVDKAYNLFQVA 433

Query: 262 LDSDCKIDTQSYNVLMTLF--LNK--------------GLPYK----------------- 288
           ++ + + D ++ + +M  +  +N+              G P                   
Sbjct: 434 IEEELEPDFETLSPIMVAYVVMNRLSDFSNLLERIGELGYPVTDYLTQFFKLLCADEEKR 493

Query: 289 --AFEIYESME-KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
             A ++++ ++ KG  S+  S Y +++  L K G +  ++ LF EMKE  F P  + ++ 
Sbjct: 494 TMALDVFDILKTKGHGSV--SVYNILMEVLYKMGDIQKSLSLFYEMKEFGFEPDSSSYSI 551

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE-MRIA 404
            +      G +  +   + ++      PS   Y+SL +   + G++D  + L  E +   
Sbjct: 552 ALCCFVDKGDVQEACSCHEKIIEMSRVPSKAAYLSLTKGLCQIGEIDAVMLLVRECLGNV 611

Query: 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSA 464
              P    + + +    K    +  M +  +M + G       Y  ++   +  G + +A
Sbjct: 612 ESGPMEFKYVLRVCHVCKGSNAEKVMEVVDEMNQEGVSINEVIYCAIISGMSKHGTIKAA 671

Query: 465 MKLYNSMTSAGL--RPGLSTYTALLTLLAKRKLVDV 498
            +++  +    +     +  Y  +L    K+K  D+
Sbjct: 672 REVFAELKKRKVMTEADMVVYDEMLIEQTKKKTADL 707


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 178/398 (44%), Gaps = 35/398 (8%)

Query: 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223
           ++ I  AL  + + D ++ +FR    ++    G     ++  + NE R  D  +SL DEM
Sbjct: 3   LIPIVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGR-IDEAVSLLDEM 61

Query: 224 -VHDSSKNGIS---LFSA----------------------------YNRVIQYLAKADKL 251
            V  +  N ++   L SA                            YN ++  L    KL
Sbjct: 62  QVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKL 121

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           + +     +++ + C  +  ++  L+  F+  G       +  S+E+     +  +Y  +
Sbjct: 122 DKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSL 181

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           I  L K G+ +  ++L++EM E+  +P+  ++++L+D + + G+ D + +  +EM+  GH
Sbjct: 182 ISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGH 241

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
            P++  Y SL+  Y +AG +  A+ +W EM       +   ++++I    K+GKL  A+ 
Sbjct: 242 TPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALI 301

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT--SAGLRPGLSTYTALLTL 489
           ++  M   G       YS ++    ++  V+  MKL+N M   +  L+P + TY  LL  
Sbjct: 302 VWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNA 361

Query: 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527
              +  V  A  IL  M   G   D    D+ +  ++D
Sbjct: 362 FCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRD 399



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 5/314 (1%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A E++  M    C  DG TY  ++  L   GR+D A+ L  EM+     P+   F  L+
Sbjct: 18  QAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLI 77

Query: 348 DSMGKAGRLDTSMKVY--MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
            ++ K G L  + K+   M ++GC   P+   Y SL+      GKLD A+ L + M    
Sbjct: 78  SALCKKGDLSRASKLVDNMFLKGC--VPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANK 135

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
             PN   F  +++   K G+    + +   +E  G+     +YS L+      G+ +  M
Sbjct: 136 CVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGM 195

Query: 466 KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVY 524
           +L+  M   G +P    Y+AL+  L +    D A + L+EMK  G++ +  + S ++  Y
Sbjct: 196 QLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGY 255

Query: 525 IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584
            + G +  A+   + M  +    +      L     KN   + A  + +  +    K+D+
Sbjct: 256 FEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDV 315

Query: 585 VLYTSVLAHLVRCQ 598
           V Y+S++      Q
Sbjct: 316 VAYSSMIHGFCNAQ 329



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 143/331 (43%), Gaps = 10/331 (3%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           ++  L +   ++ +   F+ + D +C  D  +Y+ LM    N+G   +A  + + M+   
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 65

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360
              +   + ++I +L K G L  A KL   M  +   P+   + SLV  +   G+LD +M
Sbjct: 66  TFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAM 125

Query: 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420
            +   M      P+   + +L++ + K G+    +R+   +   G+R N   ++ +I   
Sbjct: 126 SLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGL 185

Query: 421 AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL 480
            K GK +  M ++ +M   G  P    YS L++     G+ D A +    M + G  P  
Sbjct: 186 FKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNS 245

Query: 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRF 539
            TY++L+    +   +  A  +  EM     +  +V  S ++    K+G +  AL   + 
Sbjct: 246 FTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQ 305

Query: 540 MGSSGIRTN---------NFIVRQLFESCMK 561
           M S GI+ +          F   QL E  MK
Sbjct: 306 MLSRGIKLDVVAYSSMIHGFCNAQLVEQGMK 336



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 132/344 (38%), Gaps = 46/344 (13%)

Query: 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401
           +   +V ++ + G +D +++V+  M           Y +L+      G++D A+ L DEM
Sbjct: 2   LLIPIVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEM 61

Query: 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461
           ++ G  PN   F ++I +  K G L  A  +  +M   G +P   TY+ L+      G++
Sbjct: 62  QVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKL 121

Query: 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521
           D AM L N M                          VA K +    T G  VD       
Sbjct: 122 DKAMSLLNRM--------------------------VANKCVPNDITFGTLVDG------ 149

Query: 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581
             ++K G     +R L  +   G R N F    L     K    E    L +  VE   K
Sbjct: 150 --FVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCK 207

Query: 582 VDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAF-----LCGLFTGPEQRKQPVL 636
            + ++Y++++  L R       +  +  +    H  ++F     + G F   +  K  ++
Sbjct: 208 PNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILV 267

Query: 637 SFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWK 680
                +    D +       Y  ++L+N L   G++  A  VWK
Sbjct: 268 -----WKEMTDNDCNHHEVCY--SILINGLCKNGKLKEALIVWK 304


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 157/349 (44%), Gaps = 10/349 (2%)

Query: 190 QSWYVPGDECYVMLFDVLNESRDFDGM---LSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246
           QS+ V G  C +++  +LN     D +   + LF+E +   S N    F   N +I+ L 
Sbjct: 163 QSYEVEG--CCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTF---NILIRGLC 217

Query: 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-CSLDG 305
              K E +      +    C  D  +YN L+  F       KA E+++ ++    CS D 
Sbjct: 218 GVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDV 277

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
            TY  MI    K+G++  A  L  +M      P+   F  LVD   KAG + T+ ++  +
Sbjct: 278 VTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGK 337

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G  P    + SLI+ Y + G+++   RLW+EM   G  PN   ++++I +  K  +
Sbjct: 338 MISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENR 397

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTA 485
           L  A  +   +     +P P  Y+ +++    +G+V+ A+ +   M     +P   T+T 
Sbjct: 398 LLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTI 457

Query: 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHA 533
           L+     +  +  A  I  +M  +G S D ++ S +L   +K G    A
Sbjct: 458 LIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 116/257 (45%), Gaps = 2/257 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
            Y  +I    KA K++ +      +L         ++NVL+  +   G  + A EI   M
Sbjct: 279 TYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKM 338

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
               C  D  T+  +I    + G+++   +L++EM  R   P+   ++ L++++ K  RL
Sbjct: 339 ISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRL 398

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++  ++      P   MY  +I+ + KAGK++ A+ + +EM     +P+   FT++
Sbjct: 399 LKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTIL 458

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I  H   G++  A+SIF  M   G  P   T S LL     +G    A  L        +
Sbjct: 459 IIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIAHKGQI 518

Query: 477 RPG--LSTYTALLTLLA 491
             G  L T TA +TL A
Sbjct: 519 NDGAPLETKTANVTLAA 535



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 116/232 (50%), Gaps = 10/232 (4%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM-- 364
           TY L+  SL K+G  D A ++F+ MK     P+  +   LV S  + G+L  +  + +  
Sbjct: 105 TYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQS 164

Query: 365 -EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423
            E++GC       +  SL+ +  K  +++ A++L++E        +   F ++I      
Sbjct: 165 YEVEGC-----CMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGV 219

Query: 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM-TSAGLRPGLST 482
           GK + A+ +   M   G LP   TY+ L++    S ++  A ++++ + +S+G  P + T
Sbjct: 220 GKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVT 279

Query: 483 YTALLTLLAKRKLVDVAAKILLEMKTMG-YSVDVSASDVLMVYIKDGSVDHA 533
           YT++++   K   +  A+ +L +M  +G Y  +V+ + ++  Y K G +  A
Sbjct: 280 YTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTA 331



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 10/267 (3%)

Query: 335 NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD-- 392
           N R SF  +  L  S+ KAG  D + +++  M+  G  P++ +   L+ S+A+ GKL   
Sbjct: 98  NIRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCA 157

Query: 393 TALRLWD-EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           TAL L   E+       N  L T++     K  +++ AM +F +  R        T++ L
Sbjct: 158 TALLLQSYEVEGCCMVVNSLLNTLV-----KLDRVEDAMKLFEEHLRFQSCNDTKTFNIL 212

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK-TMG 510
           +      G+ + A++L   M+  G  P + TY  L+    K   +  A ++  ++K + G
Sbjct: 213 IRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSG 272

Query: 511 YSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569
            S D V+ + ++  Y K G +  A   L  M   GI   N     L +   K     +A+
Sbjct: 273 CSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAE 332

Query: 570 PLLETYVESAAKVDLVLYTSVLAHLVR 596
            +    +      D+V +TS++    R
Sbjct: 333 EIRGKMISFGCFPDVVTFTSLIDGYCR 359


>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Cucumis sativus]
          Length = 760

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/500 (21%), Positives = 202/500 (40%), Gaps = 45/500 (9%)

Query: 138 IVEVVNRWKWGPELETQLDKLQFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVP 195
           I +++   +W   L+  +  L  VP+  H  +   L     S+ +L+ FRW +R   +  
Sbjct: 95  ICKMMANREWTTRLQNSIRSL--VPQFDHNLVYNVLHAAKKSEHALNFFRWVERAGLFQH 152

Query: 196 GDECYVMLFDVLNESRDFDGML---------------SLFDEMVHDSSKNGI-----SLF 235
             E +  + ++L  +   +                   LF  ++    K GI      +F
Sbjct: 153 DRETHFKIIEILGRASKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIF 212

Query: 236 S------------AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283
                        +Y+ + + + +  +  M+   F  +L+   +    +YNV++  F   
Sbjct: 213 QKMKELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLS 272

Query: 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343
                A   YE M+    S D  TY  MI    +   ++ A + F EMK +N  P+   +
Sbjct: 273 LRLETAKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISY 332

Query: 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403
            +++       R D +++++ EM+  G +P+   Y +L+     A KL  A ++  EM  
Sbjct: 333 TTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVT 392

Query: 404 AGFRP-NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462
             F P +  +F  ++    K G LD AM +   M R         Y  L+E    +G  D
Sbjct: 393 RHFAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYD 452

Query: 463 SAMKLYNSMTSAG--LRPG------LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
            A+KL  ++      LRP        S Y  ++  L        A     ++   G   +
Sbjct: 453 QAVKLLENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDE 512

Query: 515 VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574
           V+ ++++  + K+G+ D A   L+ MG  G+  +    + L +S +       AK  L++
Sbjct: 513 VAFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDS 572

Query: 575 YVESAAKVDLVLYTSVLAHL 594
            +E+    D  L+ SV+  L
Sbjct: 573 MIENGHSPDSALFRSVMESL 592



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 124/321 (38%), Gaps = 43/321 (13%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           YN +I    +   +E +   F ++   +      SY  ++  +++      A  ++E M+
Sbjct: 297 YNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMK 356

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFN-IFASLVDSMGKAGRL 356
                 +  TY  ++P L  + +L  A K+  EM  R+F P  N IF  L+    K G L
Sbjct: 357 AAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRLLSCQCKHGDL 416

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD---------------EM 401
           D +M V   M        A  Y  LIE+  KAG  D A++L +               EM
Sbjct: 417 DAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEM 476

Query: 402 RIAGFR------PNFG---------------------LFTMIIESHAKSGKLDIAMSIFT 434
             + +        N G                      F  +I  HAK G  D+A  +  
Sbjct: 477 EASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFNNLIRGHAKEGNPDLAFEMLK 536

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
            M R G      +Y  L++ + S G+   A    +SM   G  P  + + +++  L    
Sbjct: 537 IMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSALFRSVMESLFADG 596

Query: 495 LVDVAAKILLEMKTMGYSVDV 515
            V  A++++  M   G + ++
Sbjct: 597 RVQTASRVMNSMLDKGITENL 617



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 150/376 (39%), Gaps = 25/376 (6%)

Query: 144 RWKWGPELE---TQLDKLQFVPKMVHITQALK---VINDSDTSLSLFRWAKRQSWYVPGD 197
           R+K   E E   T++      P ++  T  +K    ++ +D +L LF   K  +   P D
Sbjct: 306 RFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMK-AAGEKPND 364

Query: 198 ECYVMLFDVLNESRDFDGMLSLFDEMV--HDSSKNGISLFSAYNRVIQYLAKADKLEMSY 255
             Y  L   L ++        +  EMV  H + K+     S + R++    K   L+ + 
Sbjct: 365 ITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDN----SIFMRLLSCQCKHGDLDAAM 420

Query: 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC--------SLDGST 307
              K ++      +   Y +L+      G+  +A ++ E++ + E          ++ S 
Sbjct: 421 HVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASA 480

Query: 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367
           Y L+I  L   G+   A   F+++ ++  +     F +L+    K G  D + ++   M 
Sbjct: 481 YNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEV-AFNNLIRGHAKEGNPDLAFEMLKIMG 539

Query: 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427
             G    A  Y  LI+SY   G+   A    D M   G  P+  LF  ++ES    G++ 
Sbjct: 540 RRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSALFRSVMESLFADGRVQ 599

Query: 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487
            A  +   M   G        + +LE     G  + A+   N + +    P    + +LL
Sbjct: 600 TASRVMNSMLDKGITENLDLVAKILEALFMRGHDEEALGRINLLMNCNCPP---DFNSLL 656

Query: 488 TLLAKRKLVDVAAKIL 503
           ++L ++     A K+L
Sbjct: 657 SVLCEKGKTTSAFKLL 672



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 96/213 (45%), Gaps = 4/213 (1%)

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           K GI    A+N +I+  AK    ++++   K +       D +SY +L+  +L+KG P  
Sbjct: 506 KKGIQDEVAFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPAD 565

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A    +SM +   S D + +  ++ SL   GR+  A ++   M ++    + ++ A +++
Sbjct: 566 AKTALDSMIENGHSPDSALFRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILE 625

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
           ++   G  + ++     +  C      P + SL+    + GK  +A +L D         
Sbjct: 626 ALFMRGHDEEALGRINLLMNCN---CPPDFNSLLSVLCEKGKTTSAFKLLDFGLERECNI 682

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTD-MERAG 440
            F  +  ++++   +GK   A +I    ME+ G
Sbjct: 683 EFSSYEKVLDALLGAGKTLNAYAILCKIMEKGG 715


>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Cucumis sativus]
          Length = 460

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 170/391 (43%), Gaps = 44/391 (11%)

Query: 171 LKVINDSDTSLSLFRWAKRQSW--YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS 228
           +K + D   +L+LF     + +  + P    Y  L   L  SR F+ + ++   + + + 
Sbjct: 56  VKEVKDPCEALALFENYHEKGFKHHYPS---YSSLIYKLARSRRFEAVETILGHLRNRNI 112

Query: 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288
           +   +LF A   +IQ+  KA  +E     F ++   +C    QS+NVL+   ++     K
Sbjct: 113 RCNETLFVA---LIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSK 169

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           A EI++   + +   +  +Y +MI    K G  + A  LF EM E+  +PS   + S + 
Sbjct: 170 ASEIFQQAYEMDFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFLG 229

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY----------------------- 385
            + + G +DT++ ++  M   GH P+A  Y  L+E +                       
Sbjct: 230 VLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKL 289

Query: 386 ------------AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433
                        K G +D    L +EM+    +P+   + +++    K GK+  A  + 
Sbjct: 290 RPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVL 349

Query: 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT-LLAK 492
             M+  G  P  +TY  +++ + ++G  D AMK+ N+M  +G  P L T+ +L+  LL  
Sbjct: 350 VKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFASLVVGLLKG 409

Query: 493 RKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523
               D    +L EM+      D     +L++
Sbjct: 410 ENNDDYVCFVLEEMEKRQLRFDAETWRILIM 440



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 152/371 (40%), Gaps = 38/371 (10%)

Query: 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFAS 345
           P +A  ++E+  +        +Y  +I  LA+S R +A   +   ++ RN R +  +F +
Sbjct: 62  PCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFVA 121

Query: 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405
           L+   GKA  ++  ++++ +M       +   +  L+ +     +   A  ++ +     
Sbjct: 122 LIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMD 181

Query: 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465
           FRPN   + ++I+   K G  + A ++F +M   G  P+  TY+  L +    G++D+A+
Sbjct: 182 FRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTAL 241

Query: 466 KLYNSMTSAGLRPGLSTYT-----------------------------------ALLTLL 490
            L+ +MT  G  P   TY                                     L+T L
Sbjct: 242 CLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHL 301

Query: 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNN 549
            K   +D    +L EMK      DV   ++L+ Y+ K+G V  A + L  M   G   N 
Sbjct: 302 GKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNA 361

Query: 550 FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609
              R + +       ++ A  +L   + S     L  + S++  L++   E N+ ++  +
Sbjct: 362 ATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFASLVVGLLK--GENNDDYVCFV 419

Query: 610 LSATKHKAHAF 620
           L   + +   F
Sbjct: 420 LEEMEKRQLRF 430


>gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 577

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 196/469 (41%), Gaps = 48/469 (10%)

Query: 144 RWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVML 203
           R KW P L  +L      P   H   +      SD +L     A  Q+   P       +
Sbjct: 36  RPKWTPPLPEKLPSPTANPNYSHSDFSTLCNLLSDPNLKPLETALDQTGIKPETSLLNAV 95

Query: 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263
           FD  N S     + SLF  +  D      S  + +N VI  L K  + + ++C    VLD
Sbjct: 96  FDHFNSSPKL--LHSLF--VWADKQPEFESSTTLFNSVINALGKMKEFDSAWCL---VLD 148

Query: 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD---GSTYELMIPSLAKSGR 320
               + + ++ +L+  +   G+P  A   +E     +   D    +  E+++ SL K G 
Sbjct: 149 RTGLVSSDTFAILIRRYTRAGMPQSAIRTFEYAISLDFICDYNCDALLEILLDSLCKEGH 208

Query: 321 LDAAIKLFQEMKERN--FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378
           +  A + F   K+ +  + P   I+  +++   ++ +L  + ++++EM+     PS   Y
Sbjct: 209 VRVAKEYFDSRKQLDSCWIPHVRIYNIMLNGWFRSRKLKHAERLWLEMKKNNVSPSVVTY 268

Query: 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI---------- 428
            +L+E Y +  +++ A+ L D MR  G  PN  ++  II++ A+ G+             
Sbjct: 269 GTLVEGYCRMRRVERAIELVDVMRKEGIEPNALVYNPIIDALAEEGRFKEVSGMMEYFLQ 328

Query: 429 -------------------------AMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDS 463
                                    A  +   M   GF+PTP+TY+      +  G ++ 
Sbjct: 329 SESGPTISTYNSLVKGYCKAKDPVGASKVLKMMISRGFVPTPTTYNYFFRHFSKFGMIEE 388

Query: 464 AMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM- 522
            M LY  M  +G  P   T+  LL +L + + +D+A +I  EM++ G  +D++ S +L+ 
Sbjct: 389 GMNLYTKMIESGYTPDRLTFHLLLKMLCEEERLDLAVQISKEMRSRGCDMDLATSTMLIH 448

Query: 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
           ++ +    + A      M   GI       ++L +   K  + E A+ L
Sbjct: 449 LFCRMHRFEEAFMEFEDMIQKGIVPQYLTFQRLNDELRKRGMVERARKL 497



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 102/228 (44%)

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A E+ + M K     +   Y  +I +LA+ GR      + +   +    P+ + + SLV
Sbjct: 283 RAIELVDVMRKEGIEPNALVYNPIIDALAEEGRFKEVSGMMEYFLQSESGPTISTYNSLV 342

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
               KA     + KV   M   G  P+   Y      ++K G ++  + L+ +M  +G+ 
Sbjct: 343 KGYCKAKDPVGASKVLKMMISRGFVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMIESGYT 402

Query: 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467
           P+   F ++++   +  +LD+A+ I  +M   G     +T + L+ +     + + A   
Sbjct: 403 PDRLTFHLLLKMLCEEERLDLAVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFEEAFME 462

Query: 468 YNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
           +  M   G+ P   T+  L   L KR +V+ A K+   M ++ +S ++
Sbjct: 463 FEDMIQKGIVPQYLTFQRLNDELRKRGMVERARKLSDMMSSVPHSTNL 510


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 123/261 (47%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +I    K  ++E +      +      ++   +N ++  +  KG+   A +I  +ME
Sbjct: 111 YGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAME 170

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           K    LD  TY  +   L +  RLD A  L   M E    P++  + +L+    K G + 
Sbjct: 171 KMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMV 230

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            + +++ EM   G  PS   Y  +I  YAK G +  A R   EM   GF P+   +  ++
Sbjct: 231 EARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLV 290

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
             H  +GK+D+A+ +F +M++ G  P    Y+ L+   A  G+ ++A +LY+ M  AGL 
Sbjct: 291 HGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLI 350

Query: 478 PGLSTYTALLTLLAKRKLVDV 498
           P  S Y+AL+  L      DV
Sbjct: 351 PDDSLYSALVGSLHTDNRKDV 371



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 116/248 (46%)

Query: 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328
           + ++Y VL+  F   G    A  +   M+     L+   +  MI    + G +D A+K+ 
Sbjct: 107 NERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIK 166

Query: 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388
             M++         + +L   + +  RLD +  +   M   G  P+   Y +LI  + K 
Sbjct: 167 AAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKD 226

Query: 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448
           G +  A RL+ EM   G  P+   + ++I  +AK G +  A     +ME+ GF+P   TY
Sbjct: 227 GDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTY 286

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
           + L+  H  +G+VD A+KL+  M   G  P +  YTAL++ LAK    + A ++  +M  
Sbjct: 287 ASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLK 346

Query: 509 MGYSVDVS 516
            G   D S
Sbjct: 347 AGLIPDDS 354



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 139/330 (42%), Gaps = 29/330 (8%)

Query: 296 MEKGECSLDGSTYEL----MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351
           ME+   S  GS   L    ++  L KSGR+D A +L  +M       +   + SL+D   
Sbjct: 1   MERALGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYV 60

Query: 352 KA---GRLDTSM---------------------KVYMEMQGCGHRPSAPMYVSLIESYAK 387
           +    GR+   +                     KV  E  G G  P+   Y  LI  + K
Sbjct: 61  RQKDDGRVQEILEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCK 120

Query: 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447
            G+++ A  L  +M+  G   N  +F  +I+ + + G +D A+ I   ME+ G      T
Sbjct: 121 IGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYT 180

Query: 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMK 507
           Y+ L        ++D A  L + M   G+ P   TYT L+++  K   +  A ++  EM 
Sbjct: 181 YNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMA 240

Query: 508 TMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566
             G +  V   +V++  Y K GS+  A R+ + M   G   + +    L      N   +
Sbjct: 241 EKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVD 300

Query: 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            A  L E   +   + ++V YT++++ L +
Sbjct: 301 VALKLFEEMKQRGTEPNVVAYTALISGLAK 330



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 102/204 (50%), Gaps = 1/204 (0%)

Query: 229 KNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287
           K G+ L    YN +   L + ++L+ +      +++     +  +Y  L+++    G   
Sbjct: 171 KMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMV 230

Query: 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347
           +A  ++  M +   +    TY +MI   AK G +  A +  +EM+++ F P    +ASLV
Sbjct: 231 EARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLV 290

Query: 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407
                 G++D ++K++ EM+  G  P+   Y +LI   AK G+ + A +L+D+M  AG  
Sbjct: 291 HGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLI 350

Query: 408 PNFGLFTMIIESHAKSGKLDIAMS 431
           P+  L++ ++ S     + D+ +S
Sbjct: 351 PDDSLYSALVGSLHTDNRKDVKVS 374


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 122/565 (21%), Positives = 235/565 (41%), Gaps = 33/565 (5%)

Query: 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237
           D +  + R  + ++  VP +  Y +L D    +   D  + L DEM+    K   +LF  
Sbjct: 279 DEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKT--NLFIC 336

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
            N +I    K  ++  +     +++D + K D+ SYN L+  +  +G   +AF + + M 
Sbjct: 337 -NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 395

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
           +        TY  ++  L + G  D A++++  M +R   P    +++L+D + K    +
Sbjct: 396 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFE 455

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  ++ ++   G   S   + ++I    K GK+  A  ++D+M+  G  P+   +  +I
Sbjct: 456 GASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 515

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
           + + K+  +  A  +   MER    P+   Y+ L+     S ++     L   M   GL 
Sbjct: 516 DGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLT 575

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
           P + TY AL+    K  ++D A     EM   G S ++     ++  + + G +D A   
Sbjct: 576 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 635

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNAL-YESAKPLLETYVESAAKVDL---VLYTSVLA 592
           ++ M   G   ++       E  +K+ + Y + + + ++  ES     L   ++Y   +A
Sbjct: 636 MQKMVDHGFFPDH-------ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIA 688

Query: 593 HLVRCQDEQNERHLMAILSATKHKAHAFL-CGLFTGPEQRKQPVLSFVREFFHGIDYELE 651
            L +     + R   ++LS        F  C L  G           V E F   D  L 
Sbjct: 689 GLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGN-----VDEAFRLRDEMLR 743

Query: 652 EGAARYFV--NVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSV 709
            G     V  N L+N L     ++RA+ ++   ++  LFP  + ++  I           
Sbjct: 744 RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLID---------- 793

Query: 710 GAALIAVMHTLHRFRKRMLYYGVVP 734
           G   I  M    + + +M+  G+ P
Sbjct: 794 GYCKIGNMDAAFKLKDKMIEEGISP 818



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 2/265 (0%)

Query: 334 RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393
           R F  S  +F  ++    + G    ++ V+  M  CG  PS     SL+ +  K G+  T
Sbjct: 116 REFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHT 175

Query: 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453
           A  ++ +M   G  P+  + ++++ +  K GK+D A      ME  G  P   TY  L+ 
Sbjct: 176 AHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLIN 235

Query: 454 MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
            + S G V++A  +   M+  G+   + TYT L+    K+  +D A K+L  M+     V
Sbjct: 236 GYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALV 295

Query: 514 -DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571
            D  A  VL+  Y + G +D A+R L  M   G++TN FI   L     K      A+ +
Sbjct: 296 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 355

Query: 572 LETYVESAAKVDLVLYTSVLAHLVR 596
           +   V+   K D   Y ++L    R
Sbjct: 356 ITRMVDWNLKPDSYSYNTLLDGYCR 380



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 32/241 (13%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +Y  L+  +  +G+  KAF  Y  M +   S +      M+  L + GR+D A  L Q+M
Sbjct: 580 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 639

Query: 332 KERNFRPSFNIF----------ASLVDSMG----------------------KAGRLDTS 359
            +  F P    F            + DS+                       K G++D +
Sbjct: 640 VDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDA 699

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
            + +  +   G  P    Y +LI  Y+ AG +D A RL DEM   G  PN   +  +I  
Sbjct: 700 RRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALING 759

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
             KS  +D A  +F  + + G  P   TY+ L++ +   G +D+A KL + M   G+ P 
Sbjct: 760 LCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPS 819

Query: 480 L 480
           +
Sbjct: 820 I 820



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 36/280 (12%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           +S N L+   +  G  + A  +Y+ M +     D     +M+ +  K G++D A    ++
Sbjct: 158 RSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKK 217

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK--- 387
           M+     P+   + SL++     G ++ +  V   M   G   +   Y  LI+ Y K   
Sbjct: 218 MENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCK 277

Query: 388 ---------------------------------AGKLDTALRLWDEMRIAGFRPNFGLFT 414
                                             GK+D A+RL DEM   G + N  +  
Sbjct: 278 MDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICN 337

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474
            +I  + K G++  A  + T M      P   +Y+ LL+ +   G    A  L + M   
Sbjct: 338 SLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE 397

Query: 475 GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514
           G+ P + TY  LL  L +    D A +I   M   G + D
Sbjct: 398 GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPD 437



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 124/293 (42%), Gaps = 2/293 (0%)

Query: 306 STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365
           + +++++    + G    A+ +F  M +    PS     SL++++ K G   T+  VY +
Sbjct: 123 TVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQ 182

Query: 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGK 425
           M   G  P   M   ++ ++ K GK+D A     +M   G  PN   +  +I  +   G 
Sbjct: 183 MIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGD 242

Query: 426 LDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT-SAGLRPGLSTYT 484
           ++ A  +   M   G      TY+ L++ +    ++D A K+   M   A L P    Y 
Sbjct: 243 VEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYG 302

Query: 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSS 543
            L+    +   +D A ++L EM  +G   ++   + L+  Y K G +  A   +  M   
Sbjct: 303 VLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDW 362

Query: 544 GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596
            ++ +++    L +   +      A  L +  ++   +  ++ Y ++L  L R
Sbjct: 363 NLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 415



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 128/273 (46%), Gaps = 1/273 (0%)

Query: 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300
           ++    K  K++ +    KK+ +   + +  +Y+ L+  +++ G    A  + + M +  
Sbjct: 198 MVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKG 257

Query: 301 CSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTS 359
            S +  TY L+I    K  ++D A K+ + M+E     P    +  L+D   + G++D +
Sbjct: 258 VSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDA 317

Query: 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419
           +++  EM   G + +  +  SLI  Y K G++  A  +   M     +P+   +  +++ 
Sbjct: 318 VRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDG 377

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479
           + + G    A ++   M + G  PT  TY+ LL+     G  D A+++++ M   G+ P 
Sbjct: 378 YCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPD 437

Query: 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
              Y+ LL  L K +  + A+ +  ++   G++
Sbjct: 438 EVGYSTLLDGLFKMENFEGASTLWKDILARGFT 470


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/529 (22%), Positives = 215/529 (40%), Gaps = 15/529 (2%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L +   +  D  G   + +EM   + K  ++ F+ Y  +I  L K   LE +
Sbjct: 335 PDHVAYTALINGFVKQSDIGGAFQVKEEMF--ARKIKLNTFTYY-ALIHGLCKIGDLEKA 391

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
              F ++     K D Q+YN L+  +       KA+E+   ++K   + +      ++  
Sbjct: 392 EDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNG 451

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L   G L  A +LFQEM     +P+  I+ ++V  + K GR + ++K+   M+  G  P 
Sbjct: 452 LCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPD 511

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFT 434
              Y ++I  + KAGK++       EM   G +PN   +   I  + ++G++  A   F 
Sbjct: 512 VFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFI 571

Query: 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494
           +M  +G  P     + L++ +   G    A   +  M   G+ P + T++ L+  L+K  
Sbjct: 572 EMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNG 631

Query: 495 LVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553
            +  A  +  E+   G   DV + + ++    K+G +  A      M   GI  N     
Sbjct: 632 KLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYN 691

Query: 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613
            L     K      A+ L +   E     + V Y++++A   +  +      L   +   
Sbjct: 692 ALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLV 751

Query: 614 KHKAHAFL-CGLFTG--PEQRKQPVLSFVREFFHGIDYELEEG-AARYFVNVLLNYLVLM 669
                +F+ C L  G       +  LS     F G+   +EEG A+    N L++    +
Sbjct: 752 GVPPDSFVYCALIDGCCKAGNTEKALS----LFLGM---VEEGIASTPAFNALIDGFFKL 804

Query: 670 GQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMH 718
           G++  A  + +   +N + P  + +   I +   V N+     L   M 
Sbjct: 805 GKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQ 853



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 148/334 (44%), Gaps = 1/334 (0%)

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
           K D  +Y  L+  F+ +     AF++ E M   +  L+  TY  +I  L K G L+ A  
Sbjct: 334 KPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAED 393

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           LF EM     +P    +  L++   K   ++ + ++ +E++      +A M  +++    
Sbjct: 394 LFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLC 453

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
             G L  A  L+ EM   G +PN  ++T I++   K G+ + A+ I   M+  G  P   
Sbjct: 454 HCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVF 513

Query: 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506
            Y+ ++     +G+++        M + GL+P + TY A +    +   +  A +  +EM
Sbjct: 514 CYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEM 573

Query: 507 KTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALY 565
              G +  DV  +D++  Y KDG+   A    R M   G+  +      L     KN   
Sbjct: 574 LDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKL 633

Query: 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQD 599
           + A  +    ++     D+  YTS++++L +  D
Sbjct: 634 QEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGD 667



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 150/350 (42%), Gaps = 37/350 (10%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
            +  N + + L K +++E+ +  +K +L +    D  +Y  L+  +   G   +   +  
Sbjct: 198 LACCNSLSKDLLKGNRVELFWKVYKGMLGAIVP-DVYTYTNLINAYCRVGKVEEGKHVLF 256

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            ME+  C  +  TY ++I  L ++G +D A++L + M  +   P   I+A+L+D   +  
Sbjct: 257 DMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQK 316

Query: 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414
           R      +  EM   G +P    Y +LI  + K   +  A ++ +EM     + N   + 
Sbjct: 317 RSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYY 376

Query: 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH------------------- 455
            +I    K G L+ A  +F++M   G  P   TY+CL+E +                   
Sbjct: 377 ALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKE 436

Query: 456 ----------------ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
                              G +  A +L+  M S GL+P +  YT ++  L K    + A
Sbjct: 437 NLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEA 496

Query: 500 AKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIRTN 548
            KIL  MK  G S DV   + +++ + K G ++    +L  M + G++ N
Sbjct: 497 IKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPN 546



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 157/365 (43%), Gaps = 11/365 (3%)

Query: 194  VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLE 252
            VP    Y  L   L +  D      L D+M     K GI+     YN +I  L K  ++ 
Sbjct: 649  VPDVFTYTSLISNLCKEGDLKAAFELHDDMC----KKGINPNIVTYNALINGLCKLGEIA 704

Query: 253  MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
             +   F  + +     ++ +Y+ ++  +       +AF+++  M+      D   Y  +I
Sbjct: 705  KARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALI 764

Query: 313  PSLAKSGRLDAAIKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370
                K+G  + A+ LF  M E      P+FN   +L+D   K G+L  + ++  +M    
Sbjct: 765  DGCCKAGNTEKALSLFLGMVEEGIASTPAFN---ALIDGFFKLGKLIEAYQLVEDMVDNH 821

Query: 371  HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430
              P+   Y  LIE +   G +  A +L+ EM+     PN   +T ++  + + G+     
Sbjct: 822  ITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMF 881

Query: 431  SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490
            S+F +M   G  P    +S +++ H   G    A+KL + M S G+    + YT L+  L
Sbjct: 882  SLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDAL 941

Query: 491  AKRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNN 549
             K   +    K+L E++  G  + ++    L+  + + G  D ALR L  M  S +    
Sbjct: 942  CKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVRSFLNLLE 1001

Query: 550  FIVRQ 554
            F VR 
Sbjct: 1002 FSVRN 1006



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 151/353 (42%), Gaps = 16/353 (4%)

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           ++++L  +  N GL   A  + E M      +D     + I        LD+ IK ++E+
Sbjct: 109 TFSILSLILCNSGLFGNAANVLERM------IDTRNPHVKI--------LDSIIKCYKEI 154

Query: 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391
              +   S  +F  L+D   K G L+ ++ V++  +            SL +   K  ++
Sbjct: 155 NGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRV 214

Query: 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451
           +   +++  M +    P+   +T +I ++ + GK++    +  DME  G +P   TYS +
Sbjct: 215 ELFWKVYKGM-LGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVV 273

Query: 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511
           +     +G VD A++L  SM + GL P    Y  L+    ++K       +L EM TMG 
Sbjct: 274 IAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGL 333

Query: 512 SVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570
             D V+ + ++  ++K   +  A +    M +  I+ N F    L     K    E A+ 
Sbjct: 334 KPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAED 393

Query: 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCG 623
           L         K D+  Y  ++    + Q+ +    L+  +      A+A++CG
Sbjct: 394 LFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCG 446



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/550 (16%), Positives = 215/550 (39%), Gaps = 52/550 (9%)

Query: 133 SAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSW 192
           + V +I  ++ +  W   +E+     +  P +V +      + D       F W   ++ 
Sbjct: 43  NTVKEITSLLKQKNWQFLIESSPLPNKLNPDVVFLVIKQNQVIDPKRLHGFFNWVNSRTV 102

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           +      + +L  +L  S  F    ++ + M+   ++N       + +++  + K     
Sbjct: 103 FSQNLSTFSILSLILCNSGLFGNAANVLERMI--DTRN------PHVKILDSIIK----- 149

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-------CS--- 302
               C+K++  S        + +L+ ++  KG   +A  ++   +  E       C+   
Sbjct: 150 ----CYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLS 205

Query: 303 ---LDGS---------------------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338
              L G+                     TY  +I +  + G+++    +  +M+E+   P
Sbjct: 206 KDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIP 265

Query: 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398
           +   ++ ++  + +AG +D ++++   M   G  P   +Y +LI+ + +  +      + 
Sbjct: 266 NLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSML 325

Query: 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458
           DEM   G +P+   +T +I    K   +  A  +  +M          TY  L+      
Sbjct: 326 DEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKI 385

Query: 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518
           G ++ A  L++ MT  G++P + TY  L+    K + ++ A ++L+E+K    + +    
Sbjct: 386 GDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMC 445

Query: 519 DVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577
             ++  +   G +  A    + M S G++ N  I   + +  +K   +E A  +L    +
Sbjct: 446 GAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKD 505

Query: 578 SAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLS 637
                D+  Y +V+    +    +  +  +  + A   K + +  G F     R   + +
Sbjct: 506 QGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQA 565

Query: 638 FVREFFHGID 647
             R F   +D
Sbjct: 566 AERSFIEMLD 575


>gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Glycine max]
          Length = 461

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 150/320 (46%), Gaps = 2/320 (0%)

Query: 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296
           ++N +I    +      S   F ++L      D  S+N+LM      G P +A  +++ +
Sbjct: 85  SFNTLISGAVRKSLFSKSLDLFDEMLKRGINPDAWSHNILMNCLFQLGKPDEANRVFKEI 144

Query: 297 EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356
              +  +  +TY +MI  L K+G +  A+ LF+ ++   F P    + +L++ + KA RL
Sbjct: 145 VLRD-EVHPATYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALINGLCKARRL 203

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + +V  E    G+ P+A  Y +++    +    +  L +  EMR  GF  +   +  +
Sbjct: 204 KDARRVLKEFGETGNEPNAVTYTTVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTV 263

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           I +  K+G++  A  I   M  +G  P   +Y+ L+ ++   G++D A++L + +   GL
Sbjct: 264 IAAMIKTGRMQEAEEIVEMMVSSGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGL 323

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALR 535
                T+T ++  L K    D A + L  M ++G+  ++ A +  +  + K G +DHALR
Sbjct: 324 ECDQYTHTIIVDGLCKAGNFDGAQRHLNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALR 383

Query: 536 WLRFMGSSGIRTNNFIVRQL 555
               M      T   +V  L
Sbjct: 384 LFEVMEVKDSFTYTIVVHNL 403



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 146/337 (43%), Gaps = 45/337 (13%)

Query: 213 FDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271
           F   L LFDEM+    K GI+  + ++N ++  L +  K + +   FK+++  D ++   
Sbjct: 99  FSKSLDLFDEML----KRGINPDAWSHNILMNCLFQLGKPDEANRVFKEIVLRD-EVHPA 153

Query: 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331
           +YN+++      G    A  ++ ++++        TY  +I  L K+ RL  A ++ +E 
Sbjct: 154 TYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRVLKEF 213

Query: 332 KERNFRP---------------------------------SFNIFA--SLVDSMGKAGRL 356
            E    P                                 +F+ FA  +++ +M K GR+
Sbjct: 214 GETGNEPNAVTYTTVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRM 273

Query: 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416
             + ++   M   G RP    Y +LI  Y + G+LD ALRL DE+   G   +    T+I
Sbjct: 274 QEAEEIVEMMVSSGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTII 333

Query: 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL 476
           ++   K+G  D A      M   GF      ++C L+    +G +D A++L+  M     
Sbjct: 334 VDGLCKAGNFDGAQRHLNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVMEV--- 390

Query: 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513
                TYT ++  L + +    A+K+L+     GY V
Sbjct: 391 -KDSFTYTIVVHNLCRARRFLCASKVLVSCLKCGYQV 426



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/313 (19%), Positives = 118/313 (37%), Gaps = 37/313 (11%)

Query: 302 SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361
           SL      + + SL K+ ++  A     +       P    + +L+D+  +   LD +  
Sbjct: 10  SLSTKLLNITVSSLCKAKQIPNAETAIVDGIRLGVLPDVVTYNTLIDAYCRFATLDVAYS 69

Query: 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421
           V   M   G  P    + +LI    +      +L L+DEM   G  P+     +++    
Sbjct: 70  VLARMHDAGIPPDVVSFNTLISGAVRKSLFSKSLDLFDEMLKRGINPDAWSHNILMNCLF 129

Query: 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS 481
           + GK D A  +F ++     +  P+TY+ ++     +G V +A+ L+ ++   G  P + 
Sbjct: 130 QLGKPDEANRVFKEIVLRDEVH-PATYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVL 188

Query: 482 TYTALLTLLAK-RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540
           TY AL+  L K R+L D                                   A R L+  
Sbjct: 189 TYNALINGLCKARRLKD-----------------------------------ARRVLKEF 213

Query: 541 GSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDE 600
           G +G   N      +   C +  L+E    +L          D   Y +V+A +++    
Sbjct: 214 GETGNEPNAVTYTTVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRM 273

Query: 601 QNERHLMAILSAT 613
           Q    ++ ++ ++
Sbjct: 274 QEAEEIVEMMVSS 286


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 163/356 (45%), Gaps = 5/356 (1%)

Query: 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297
           Y  +++ L +  + + +Y    +V +    ++    N ++   L +G   +A E+YE M 
Sbjct: 288 YGFLLRGLCRTRQADEAYAMLGRVPE----VNVVMLNTVIRGCLAEGKLARATELYEMMG 343

Query: 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357
              C  D  TY +++  L K GR  +A+++  EM+E+   P+   +++L+ S  + G  D
Sbjct: 344 SKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWD 403

Query: 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417
            +  +  +M   G   ++  Y  +I +  K GKLD A+RL  EM+  G +P+   +  II
Sbjct: 404 DARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTII 463

Query: 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477
                + ++D A  IF ++   G +    TY+ L+     SG+    ++L N M   G  
Sbjct: 464 YHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCP 523

Query: 478 PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRW 536
             + +Y  L+  L K   VD +  +L EM T G   +  + ++L+  + K G V  AL  
Sbjct: 524 LDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALEL 583

Query: 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
            + M + G+  +      L     K     +A  LLE         D+V Y  +++
Sbjct: 584 SKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILIS 639



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 108/518 (20%), Positives = 197/518 (38%), Gaps = 46/518 (8%)

Query: 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294
           F +YN V+  LA+AD    +   ++++L       T ++ V        G    A  +  
Sbjct: 145 FRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALLR 204

Query: 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354
            M +  C  D   Y+ +I +L   G +  A  L  EM         N F  +V  +   G
Sbjct: 205 GMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLG 264

Query: 355 RLDTSMKVY--MEMQGCGHRPSAPMYVSLI----------ESYA---------------- 386
            +  + ++   M M GC   PS   Y  L+          E+YA                
Sbjct: 265 HVREAARLVDRMMMHGC--TPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTV 322

Query: 387 -----KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441
                  GKL  A  L++ M   G  P+   + +++    K G+   A+ +  +ME  G 
Sbjct: 323 IRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGC 382

Query: 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAK 501
            P   TYS LL     +G  D A  + + M++ G       Y  ++  L K   +D A +
Sbjct: 383 APNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMR 442

Query: 502 ILLEMKTMGYSVDVSASDVLMVYI-KDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560
           ++ EMK+ G   D+   + ++ ++  +  +D A      +   G+  N      L  + +
Sbjct: 443 LVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALL 502

Query: 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI--LSATKHKAH 618
            +  ++    L    V     +D+V Y  ++  L  C++   +R +M +  +     K +
Sbjct: 503 HSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKAL--CKEGNVDRSMMLLEEMMTKGIKPN 560

Query: 619 AFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFV--NVLLNYLVLMGQINRAR 676
            F   +      +       VR+        L +G     V  N L+N L  +G  + A 
Sbjct: 561 NFSYNMLINELCKA----GKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAAL 616

Query: 677 CVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALI 714
            + +      + P  + ++  I+W   VR L   + L+
Sbjct: 617 NLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLL 654



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 3/247 (1%)

Query: 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266
           L +    D  + L  EM     K  I     YN +I +L   D+++ +   F  +L+   
Sbjct: 431 LGKDGKLDEAMRLVQEMKSQGCKPDIC---TYNTIIYHLCNNDQMDEAEHIFGNLLEEGV 487

Query: 267 KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326
             +  +YN L+   L+ G   +   +   M    C LD  +Y  +I +L K G +D ++ 
Sbjct: 488 VANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMM 547

Query: 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386
           L +EM  +  +P+   +  L++ + KAG++  ++++  EM   G  P    Y +LI    
Sbjct: 548 LLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLC 607

Query: 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446
           K G    AL L +++      P+   + ++I  H K   LD A  +       G +P   
Sbjct: 608 KVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNER 667

Query: 447 TYSCLLE 453
           T+  +++
Sbjct: 668 TWGMMVQ 674



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 4/193 (2%)

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289
           NGI+    YN +I  L  + + +       +++   C +D  SYN L+     +G   ++
Sbjct: 490 NGIT----YNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRS 545

Query: 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349
             + E M       +  +Y ++I  L K+G++  A++L +EM  +   P    + +L++ 
Sbjct: 546 MMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLING 605

Query: 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409
           + K G    ++ +  ++      P    Y  LI  + K   LD A  L D+    G  PN
Sbjct: 606 LCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPN 665

Query: 410 FGLFTMIIESHAK 422
              + M++++  +
Sbjct: 666 ERTWGMMVQNFVR 678



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 6/171 (3%)

Query: 394 ALRLWDEM-RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452
           AL L D+M R     P+F  +  ++ + A++     A+ ++  M R    PT  T+    
Sbjct: 128 ALHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAA 187

Query: 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512
                 G+   A+ L   M   G  P    Y  ++  L  +  V  AA +L EM  MG +
Sbjct: 188 RALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCA 247

Query: 513 VDVSA-SDVLMVYIKDGSVDHALRWLRFMGSSG----IRTNNFIVRQLFES 558
            DV+  +DV++     G V  A R +  M   G    + T  F++R L  +
Sbjct: 248 ADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRT 298


>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 481

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/480 (21%), Positives = 192/480 (40%), Gaps = 51/480 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L     S+ +L  F W +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPSFDHELVYNVLHSSKTSEHALQFFXWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    K   ++ S   F+K+ +   +   +SYN 
Sbjct: 65  RCILLDM----PKKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVXLKEMMDKYLAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
           H KSG LD A  +   M R         Y  L+E     GQ D A+KL + +      LR
Sbjct: 301 HCKSGNLDAAADVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K      AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSXYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSSLFRSVM 480



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 139/303 (45%), Gaps = 10/303 (3%)

Query: 296 MEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355
           M K     D   + +MI S  K G +  ++K+FQ+M+E     +   + +L   + + GR
Sbjct: 71  MPKKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGR 130

Query: 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415
              + + + +M   G  P+   +  +I  +  +GK++TA R +++M+     P+   +  
Sbjct: 131 YMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNT 190

Query: 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG 475
           +I  + +  K++ A   F +M+     PT  TY+ L++ + S  QVD A++L   M   G
Sbjct: 191 MINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFG 250

Query: 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYI----KDGSVD 531
           ++P   TY+ LL  L   + +  A   L EM  M   +  + + + M  I    K G++D
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVXLKEM--MDKYLAPTDNSIFMRLISSHCKSGNLD 308

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + T       L E+  K   Y+ A  LL+  +E     D++L     
Sbjct: 309 AAADVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEK----DIILRPQST 364

Query: 592 AHL 594
            HL
Sbjct: 365 LHL 367


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 125/265 (47%), Gaps = 18/265 (6%)

Query: 220 FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279
           F  ++H   +NG +     NR  + L  A              +S  ++D  SY+ ++  
Sbjct: 407 FGTLIHGLCENGYA-----NRAFEILEDAR-------------NSGEELDVFSYSSMINR 448

Query: 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339
           F   G  + A E+Y++M K  C  +   Y  +I    +  +++ AIK++ EM      P+
Sbjct: 449 FCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPT 508

Query: 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399
              + +L+D + KA +   +  +  EM   G +P    Y SLI    +  K+D ALR+WD
Sbjct: 509 IITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWD 568

Query: 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG 459
           E+  AG + +  +  ++I     +GK+D A  I+ +M+     P   TY+ L++     G
Sbjct: 569 EILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIG 628

Query: 460 QVDSAMKLYNSMTSAGLRPGLSTYT 484
            +D A  L+ ++   GL+P + TY 
Sbjct: 629 SIDKAASLWTAILDNGLKPDIVTYN 653



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 1/287 (0%)

Query: 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL-DSDCKIDTQSYNVLMTLFLNKGLPYK 288
           +GI   + YN + + L  +  +  +    K++  D+ C  D  ++  L+      G   +
Sbjct: 363 SGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANR 422

Query: 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348
           AFEI E        LD  +Y  MI    K GR   A ++++ M +   +P+ +++ +L++
Sbjct: 423 AFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALIN 482

Query: 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408
              +  +++ ++K+Y+EM   G  P+   Y +LI+   KA K   A  L  EM   GF+P
Sbjct: 483 GFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKP 542

Query: 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLY 468
           +   +  +I    +  K+D+A+ I+ ++  AG       ++ L+    S+G+VD A  +Y
Sbjct: 543 DIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIY 602

Query: 469 NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515
             M      P L TY  L+    +   +D AA +   +   G   D+
Sbjct: 603 LEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDI 649



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 165/339 (48%), Gaps = 12/339 (3%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCF 258
           Y +L   L  S D D    ++ +MV    K G+ L  S YN +I+   +  +   ++  +
Sbjct: 302 YGILIHGLCRSGDVDSAARVYSDMV----KAGLVLDVSVYNSLIKGFCEVGRTGEAWKFW 357

Query: 259 KKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK-GECSLDGSTYELMIPSLAK 317
                S  +  T +YN++    L+ G+  +A E+ + +E    CS D  T+  +I  L +
Sbjct: 358 DSTGFSGIRQIT-TYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCE 416

Query: 318 SGRLDAAIKLFQEMKERNFRPSFNIFA--SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA 375
           +G  + A ++ ++   RN     ++F+  S+++   K GR   + +VY  M   G +P++
Sbjct: 417 NGYANRAFEILED--ARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNS 474

Query: 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435
            +Y +LI  + +  K++ A++++ EM   G  P    +  +I+   K+ K   A S+  +
Sbjct: 475 HVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKE 534

Query: 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495
           M   GF P   TY+ L+       +VD A+++++ +  AGL+  +  +  L+  L     
Sbjct: 535 MLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGK 594

Query: 496 VDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHA 533
           VD A  I LEMK    S ++   + LM  + + GS+D A
Sbjct: 595 VDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKA 633



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 109/518 (21%), Positives = 219/518 (42%), Gaps = 31/518 (5%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEM 253
           P  + Y ++   L    D D  +SLF  +     + G++     Y+ ++  LAK D+L+ 
Sbjct: 156 PNLQTYNIILRSLCARGDVDRAVSLFSSL----RRRGVAPDRVTYSTLMSGLAKHDQLDN 211

Query: 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-CSLDGSTYELMI 312
           +     ++ +   + D   YN L++     G+  KA +++E + +    S + +TY++M+
Sbjct: 212 ALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVML 271

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
             L K GR   A +++  M   N +     +  L+  + ++G +D++ +VY +M   G  
Sbjct: 272 DGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLV 331

Query: 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432
               +Y SLI+ + + G+   A + WD    +G R     + ++ +    SG +  A  +
Sbjct: 332 LDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIR-QITTYNIMTKGLLDSGMVSEATEL 390

Query: 433 FTDMER-AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
              +E  A   P   T+  L+     +G  + A ++     ++G    + +Y++++    
Sbjct: 391 LKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFC 450

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNF 550
           K      A ++   M   G   +    + L+  + +   ++ A++    M S+G      
Sbjct: 451 KDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTII 510

Query: 551 IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM--- 607
               L +   K   Y+ A  L +  +E   K D+  Y S++  L  C+D++ +  L    
Sbjct: 511 TYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGL--CRDKKVDVALRIWD 568

Query: 608 AILSATKH---KAHAFLC-GLFTGPEQRKQPVLSFVREFFHGIDYELEEGAAR---YFVN 660
            IL A        H  L  GL +  +         V E F  I  E++E          N
Sbjct: 569 EILDAGLQVDVMVHNILIHGLCSAGK---------VDEAF-CIYLEMKEKNCSPNLVTYN 618

Query: 661 VLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHI 698
            L++    +G I++A  +W    +N L P  + ++  I
Sbjct: 619 TLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRI 656



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 92/481 (19%), Positives = 195/481 (40%), Gaps = 41/481 (8%)

Query: 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330
           Q+YN+++     +G   +A  ++ S+ +   + D  TY  ++  LAK  +LD A+ L  E
Sbjct: 159 QTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDE 218

Query: 331 MKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM-QGCGHRPSAPMYVSLIESYAKAG 389
           M     +     + +L+    + G  + +MKV+ ++ +  G  P+   Y  +++   K G
Sbjct: 219 MPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLG 278

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS 449
           +   A  +W  M     + +   + ++I    +SG +D A  +++DM +AG +   S Y+
Sbjct: 279 RFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYN 338

Query: 450 CLLEMHASSGQVDSAMKLYNSMTSAGLR-------------------------------- 477
            L++     G+   A K ++S   +G+R                                
Sbjct: 339 SLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDA 398

Query: 478 ---PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHA 533
              P   T+  L+  L +    + A +IL + +  G  +DV S S ++  + KDG    A
Sbjct: 399 SCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDA 458

Query: 534 LRWLRFMGSSGIRTNNFIVRQLFES-CMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592
               + M   G + N+ +   L    C  + + ++ K  +E          ++ Y +++ 
Sbjct: 459 NEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPT-IITYNTLID 517

Query: 593 HLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEE 652
            L + +  Q    L   +     K              R + V   +R +   +D  L+ 
Sbjct: 518 GLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQV 577

Query: 653 GAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAA 712
               +  N+L++ L   G+++ A C++    E    P  + ++  +    ++ ++   A+
Sbjct: 578 DVMVH--NILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAAS 635

Query: 713 L 713
           L
Sbjct: 636 L 636



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 136/307 (44%), Gaps = 10/307 (3%)

Query: 275 VLMTLFLNKGLPYKAFEIYESMEKG-ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333
           V+++ F    +P  A   +  +     C+    ++  ++ +  ++ R   A   F  +  
Sbjct: 88  VVLSAFSRALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSH 147

Query: 334 ----RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389
               R   P+   +  ++ S+   G +D ++ ++  ++  G  P    Y +L+   AK  
Sbjct: 148 GAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHD 207

Query: 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER-AGFLPTPSTY 448
           +LD AL L DEM   G + +   +  ++    ++G  + AM ++  + R  G  P  +TY
Sbjct: 208 QLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATY 267

Query: 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508
             +L+     G+   A ++++ M +   +    TY  L+  L +   VD AA++  +M  
Sbjct: 268 KVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVK 327

Query: 509 MGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGIR---TNNFIVRQLFESCMKNAL 564
            G  +DVS  + L+  + + G    A ++    G SGIR   T N + + L +S M +  
Sbjct: 328 AGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEA 387

Query: 565 YESAKPL 571
            E  K L
Sbjct: 388 TELLKQL 394



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 101/234 (43%), Gaps = 3/234 (1%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L +        +  + ++ EM   +S         YN +I  L KA+K + +
Sbjct: 472 PNSHVYNALINGFCRVSKINDAIKIYIEM---TSNGCCPTIITYNTLIDGLCKAEKYQEA 528

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314
               K++L+   K D ++Y  L+           A  I++ +      +D   + ++I  
Sbjct: 529 SSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHG 588

Query: 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374
           L  +G++D A  ++ EMKE+N  P+   + +L+D   + G +D +  ++  +   G +P 
Sbjct: 589 LCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPD 648

Query: 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI 428
              Y + I+      +    + L +E+   G  P    +++++ +  K G + I
Sbjct: 649 IVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGPIQI 702


>gi|255538676|ref|XP_002510403.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551104|gb|EEF52590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 147/309 (47%), Gaps = 14/309 (4%)

Query: 239 NRVIQYLAKADKL-EMSYCCFKKVLD-----SDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292
           NRV  +L   DKL E +   F KV +        + + + Y+VL+     K        I
Sbjct: 348 NRV-DWLTLLDKLKEKNMQTFFKVAEHLLNEKSFQPNIRDYSVLIDAHATKNQIEDVERI 406

Query: 293 YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352
            E M +     D S    ++   +K+G  D   + F  ++   F+P   ++ S++ +   
Sbjct: 407 LEKMNENGIFPDISASTALVHMYSKAGNFDRTKEAFGRLRSHGFQPDIKVYNSMIMASVN 466

Query: 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412
           AG+         EM+    +P+  MY +L+ S+A+ G +  A ++   M+ AGF+PN   
Sbjct: 467 AGQPKLGDSFVREMEARDIKPTEEMYFALLRSFAQLGDVSEAHKIATAMQFAGFQPNLEF 526

Query: 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472
           +T+++E+H ++G+ D A   F  M + GF P     + L+  +     +D A+ +   + 
Sbjct: 527 YTLLVEAHGRAGQPDQARRNFDQMIKVGFRPDDRVAASLIAAYEKKNLLDEALDILLQLK 586

Query: 473 SAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG----YSVDVSASDVLMVYIKDG 528
             G  PGL+T T L+  LAK +LVD A ++L ++   G    + + VS  D   +Y + G
Sbjct: 587 KDGFEPGLATCTVLVDWLAKLQLVDEAEQLLGKIAEQGEAPPFKIQVSLCD---MYARVG 643

Query: 529 SVDHALRWL 537
           +   AL+ L
Sbjct: 644 NEKKALQVL 652



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 148/335 (44%), Gaps = 9/335 (2%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKL 251
           + P    Y +L D        + +  + ++M    ++NGI    SA   ++   +KA   
Sbjct: 380 FQPNIRDYSVLIDAHATKNQIEDVERILEKM----NENGIFPDISASTALVHMYSKAGNF 435

Query: 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311
           + +   F ++     + D + YN ++   +N G P         ME  +       Y  +
Sbjct: 436 DRTKEAFGRLRSHGFQPDIKVYNSMIMASVNAGQPKLGDSFVREMEARDIKPTEEMYFAL 495

Query: 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH 371
           + S A+ G +  A K+   M+   F+P+   +  LV++ G+AG+ D + + + +M   G 
Sbjct: 496 LRSFAQLGDVSEAHKIATAMQFAGFQPNLEFYTLLVEAHGRAGQPDQARRNFDQMIKVGF 555

Query: 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           RP   +  SLI +Y K   LD AL +  +++  GF P     T++++  AK   +D A  
Sbjct: 556 RPDDRVAASLIAAYEKKNLLDEALDILLQLKKDGFEPGLATCTVLVDWLAKLQLVDEAEQ 615

Query: 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491
           +   +   G  P       L +M+A  G    A+++   + +   + G + +  ++  L 
Sbjct: 616 LLGKIAEQGEAPPFKIQVSLCDMYARVGNEKKALQVLGVLEAKKEQLGSNDFERVIHGLI 675

Query: 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK 526
             + V  A ++   M+  GY    SAS+ L+V ++
Sbjct: 676 AGRFVQEATRVHALMEAQGY----SASEQLVVALR 706


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 144/323 (44%), Gaps = 40/323 (12%)

Query: 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFK 259
           Y  +  +L ++R F  M++L  EM     K G     A+   I+  A A +++ +   F+
Sbjct: 224 YCKMVHILGKARQFQSMVALIQEM----GKEGALCMDAFKIAIKSFAAAGEIKNAVGVFE 279

Query: 260 KVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319
            +         +S+N L+     +GL  +A ++                           
Sbjct: 280 MMRTHGFDDGVESFNCLLVALAQEGLGREANQV--------------------------- 312

Query: 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV 379
                   F  M++R + P    + +L+ +   A  L  + +V+ EM   G +P   ++ 
Sbjct: 313 --------FDRMRDR-YAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHN 363

Query: 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439
           ++IE   +  +   A+++++ M+  G  PN   +TM+I  H K GK+D+AM  F +M+  
Sbjct: 364 TMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDV 423

Query: 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVA 499
           G  P  +TY+CLL  + ++ ++D    L   MT  G  P   TY AL+ LL  R + D A
Sbjct: 424 GCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDA 483

Query: 500 AKILLEMKTMGYSVDVSASDVLM 522
           A+I  +M   G    +   +++M
Sbjct: 484 ARIYKKMIKKGLEPTIHTYNMMM 506



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 108/255 (42%), Gaps = 5/255 (1%)

Query: 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252
           Y P    Y  L      +R+      +++EM+ +  K  + +   +N +I+ L +  +  
Sbjct: 320 YAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVV---HNTMIEGLLRGQRRP 376

Query: 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312
            +   F+ +       +  +Y +L+     +G    A   +E M+   C  D +TY  ++
Sbjct: 377 EAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLL 436

Query: 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372
                + R+D    L +EM ++   P    + +L+  +      D + ++Y +M   G  
Sbjct: 437 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLE 496

Query: 373 PSAPMYVSLIESYAKAGK-LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMS 431
           P+   Y  +++SY   G+       +W+EM   G  P+   +T+ I  H + G+ + A  
Sbjct: 497 PTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACK 556

Query: 432 IFTDMERAGFLPTPS 446
              +M + G + TP 
Sbjct: 557 YIEEMIQKG-MKTPQ 570



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 121/282 (42%), Gaps = 15/282 (5%)

Query: 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366
           TY  M+  L K+ +  + + L QEM +       + F   + S   AG +  ++ V+  M
Sbjct: 223 TYCKMVHILGKARQFQSMVALIQEMGKEGAL-CMDAFKIAIKSFAAAGEIKNAVGVFEMM 281

Query: 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426
           +  G       +  L+ + A+ G    A +++D MR   + P+   +T ++ +   +  L
Sbjct: 282 RTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDR-YAPDLRSYTALMLAWCNARNL 340

Query: 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486
             A  ++ +M   G  P    ++ ++E      +   A+K++  M + G  P + TYT L
Sbjct: 341 VEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTML 400

Query: 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV-YIKDGSVDHALRWLRFMGSSGI 545
           +    KR  +D+A +   EM+ +G   DV+    L+V Y     +D     L  M   G 
Sbjct: 401 IRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGC 460

Query: 546 ----RTNNFIVRQLFESCM--------KNALYESAKPLLETY 575
               RT N +++ L    M        K  + +  +P + TY
Sbjct: 461 PPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTY 502



 Score = 42.0 bits (97), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 10/167 (5%)

Query: 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254
           P    Y  L      ++  D + +L +EM   + K        YN +I+ L   +  + +
Sbjct: 427 PDVATYTCLLVGYGNAKRMDRVTALLEEM---TQKGCPPDGRTYNALIKLLTNRNMPDDA 483

Query: 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK-AFEIYESMEKGECSLDGSTYELMIP 313
              +KK++    +    +YN++M  +   G  Y     ++E M +     D ++Y + I 
Sbjct: 484 ARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFIN 543

Query: 314 SLAKSGRLDAAIKLFQEMKERNFRP---SFNIFASLVDSMGKAGRLD 357
              + GR + A K  +EM ++  +     +N FA+      KAG+ D
Sbjct: 544 GHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAA---DFSKAGKPD 587


>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 484

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/483 (21%), Positives = 198/483 (40%), Gaps = 51/483 (10%)

Query: 159 QFVPKMVH--ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGM 216
             VP   H  +   L    +++ +L  FRW +R + +    E ++ + ++L  +   +  
Sbjct: 5   NLVPCFDHELVYNVLHGAKNAEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 217 LSLFDEMVHDSSKNGISL-FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275
             +  +M     K G+      +  +I    KA  ++ S   F+K+ +   +   +SY+ 
Sbjct: 65  RCILLDM----PKKGLEWDXDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDA 120

Query: 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335
           L  + L +G    A   +  M          T+ +MI     SG+++ A + F++MK R 
Sbjct: 121 LFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395
             P    + ++++   +  +++ + K ++EM+G    P+   Y +LI+ Y    ++D AL
Sbjct: 181 ISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLIKGYVSVDQVDDAL 240

Query: 396 RLWDEMRIAGFRPNF------------------------------------GLFTMIIES 419
           RL +EM+  G +PN                                      +F  +I S
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMLDKYIAPTDNSIFMRLISS 300

Query: 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--LR 477
             K+G LD A  +   M R         Y  L+E +  +GQ D A+KL + +      LR
Sbjct: 301 QCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDIILR 360

Query: 478 PGL------STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531
           P        S Y  ++  L        A  ++ ++  +G     + + ++  + ++GS D
Sbjct: 361 PQSTLHMEPSAYNXMIEYLCNNGQXAKAETLVRQLLKLGVQDPTALNTLIRGHSREGSPD 420

Query: 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVL 591
            A   L+ M    + +       L +S +K +    AK  L++ +E+    D  L+ SV+
Sbjct: 421 SAFELLKIMLRRKVDSEKSAYDSLVQSYLKKSEPXDAKAALDSMIENDHLPDSSLFRSVM 480

Query: 592 AHL 594
             L
Sbjct: 481 ESL 483


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,442,826,365
Number of Sequences: 23463169
Number of extensions: 510824140
Number of successful extensions: 1221208
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7048
Number of HSP's successfully gapped in prelim test: 5104
Number of HSP's that attempted gapping in prelim test: 1076484
Number of HSP's gapped (non-prelim): 61063
length of query: 827
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 676
effective length of database: 8,816,256,848
effective search space: 5959789629248
effective search space used: 5959789629248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)