Query 003353
Match_columns 827
No_of_seqs 868 out of 4312
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 21:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.7E-72 1.2E-76 666.4 75.2 600 166-780 375-1021(1060)
2 PLN03077 Protein ECB2; Provisi 100.0 5.2E-70 1.1E-74 662.2 47.3 657 83-797 48-753 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.7E-63 3.8E-68 593.7 65.3 524 194-737 367-916 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 2.9E-63 6.3E-68 603.2 55.2 659 83-780 149-831 (857)
5 PLN03081 pentatricopeptide (PP 100.0 4.2E-61 9.1E-66 570.8 56.7 557 165-780 91-669 (697)
6 PLN03081 pentatricopeptide (PP 100.0 9.4E-60 2E-64 559.3 43.2 474 194-732 84-559 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9E-29 1.9E-33 305.4 66.3 506 168-697 370-877 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-28 6.9E-33 300.5 70.1 509 168-698 302-811 (899)
9 PRK11447 cellulose synthase su 99.9 1.5E-19 3.2E-24 225.9 60.7 495 168-684 119-739 (1157)
10 PRK11447 cellulose synthase su 99.9 8.6E-19 1.9E-23 219.1 64.3 538 135-688 31-703 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.4E-20 3E-25 199.1 37.3 439 167-624 54-496 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 1.6E-19 3.5E-24 191.1 35.5 408 167-594 88-500 (966)
13 PRK11788 tetratricopeptide rep 99.9 3.5E-19 7.6E-24 198.1 37.1 301 204-514 42-352 (389)
14 PRK11788 tetratricopeptide rep 99.9 2.3E-19 5E-24 199.6 35.1 307 167-481 41-354 (389)
15 PRK09782 bacteriophage N4 rece 99.9 7.4E-16 1.6E-20 184.5 62.5 524 133-689 46-710 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.5E-17 5.4E-22 193.4 49.3 399 168-580 134-573 (615)
17 TIGR00990 3a0801s09 mitochondr 99.9 9.7E-17 2.1E-21 188.5 53.8 403 199-613 129-571 (615)
18 PRK15174 Vi polysaccharide exp 99.8 5.1E-17 1.1E-21 190.4 47.6 340 158-511 39-383 (656)
19 PRK15174 Vi polysaccharide exp 99.8 8.4E-17 1.8E-21 188.5 48.6 379 199-589 44-431 (656)
20 PRK10049 pgaA outer membrane p 99.8 1.3E-15 2.8E-20 182.3 51.9 399 168-581 22-459 (765)
21 PRK10049 pgaA outer membrane p 99.8 8.9E-16 1.9E-20 183.7 49.2 401 205-616 23-459 (765)
22 PRK09782 bacteriophage N4 rece 99.8 4.6E-15 1E-19 177.7 55.0 542 111-686 62-741 (987)
23 PRK14574 hmsH outer membrane p 99.8 3.7E-14 7.9E-19 166.7 55.0 437 168-618 41-518 (822)
24 KOG2002 TPR-containing nuclear 99.8 2.2E-14 4.9E-19 160.7 48.9 555 127-697 160-757 (1018)
25 PRK14574 hmsH outer membrane p 99.7 3.6E-13 7.7E-18 158.4 52.3 442 128-581 31-516 (822)
26 KOG2002 TPR-containing nuclear 99.7 5.3E-13 1.1E-17 149.9 47.1 504 169-687 172-711 (1018)
27 KOG0495 HAT repeat protein [RN 99.7 1.5E-10 3.2E-15 124.8 57.3 475 181-687 366-848 (913)
28 KOG4422 Uncharacterized conser 99.7 7.6E-12 1.6E-16 128.3 44.8 401 199-614 118-591 (625)
29 KOG4422 Uncharacterized conser 99.7 2.4E-12 5.3E-17 131.9 39.1 361 196-580 206-592 (625)
30 KOG2076 RNA polymerase III tra 99.6 2.4E-11 5.3E-16 136.0 47.6 363 208-577 150-554 (895)
31 KOG0495 HAT repeat protein [RN 99.6 1E-10 2.2E-15 126.0 48.5 358 171-541 416-780 (913)
32 KOG2076 RNA polymerase III tra 99.6 3.7E-10 8E-15 126.7 52.6 507 168-686 146-735 (895)
33 KOG2003 TPR repeat-containing 99.6 3.5E-12 7.6E-17 131.2 29.3 434 176-618 216-694 (840)
34 KOG1915 Cell cycle control pro 99.5 2.9E-09 6.3E-14 111.0 46.9 443 196-688 72-539 (677)
35 KOG1155 Anaphase-promoting com 99.5 4.3E-10 9.2E-15 117.2 40.9 357 232-607 161-530 (559)
36 TIGR00540 hemY_coli hemY prote 99.5 1.6E-10 3.5E-15 128.6 37.3 289 282-576 96-397 (409)
37 PRK10747 putative protoheme IX 99.5 1.2E-10 2.7E-15 128.8 36.0 285 210-508 97-389 (398)
38 KOG1915 Cell cycle control pro 99.5 5.4E-09 1.2E-13 109.1 43.8 426 173-615 85-538 (677)
39 KOG1126 DNA-binding cell divis 99.5 1.1E-11 2.5E-16 134.7 25.4 281 214-509 336-620 (638)
40 PRK10747 putative protoheme IX 99.5 3.6E-10 7.8E-15 125.1 37.6 284 283-577 97-389 (398)
41 PF13429 TPR_15: Tetratricopep 99.5 3.4E-13 7.3E-18 142.5 12.9 261 202-472 13-275 (280)
42 KOG1155 Anaphase-promoting com 99.5 2.6E-09 5.7E-14 111.4 40.6 360 195-574 162-532 (559)
43 TIGR00540 hemY_coli hemY prote 99.5 2.5E-10 5.3E-15 127.1 35.7 299 200-507 85-397 (409)
44 PF13429 TPR_15: Tetratricopep 99.5 4.6E-13 9.9E-18 141.5 12.7 259 168-436 15-274 (280)
45 KOG1126 DNA-binding cell divis 99.4 3.4E-11 7.4E-16 131.1 26.2 288 285-584 334-626 (638)
46 KOG0547 Translocase of outer m 99.4 2.8E-10 6.1E-15 119.1 31.5 399 173-610 127-563 (606)
47 COG2956 Predicted N-acetylgluc 99.4 1.3E-09 2.7E-14 108.9 31.0 286 210-508 48-346 (389)
48 KOG2003 TPR repeat-containing 99.4 1.9E-09 4.1E-14 111.4 33.1 454 200-672 204-710 (840)
49 COG2956 Predicted N-acetylgluc 99.4 2E-09 4.3E-14 107.5 30.7 293 174-474 48-347 (389)
50 COG3071 HemY Uncharacterized e 99.4 7.4E-09 1.6E-13 106.8 35.7 286 283-577 97-389 (400)
51 KOG1156 N-terminal acetyltrans 99.4 3.9E-08 8.5E-13 107.0 42.7 436 152-607 31-505 (700)
52 KOG1173 Anaphase-promoting com 99.3 1.6E-08 3.4E-13 108.4 36.4 454 147-615 34-520 (611)
53 COG3071 HemY Uncharacterized e 99.3 1.9E-08 4.2E-13 103.8 34.3 295 202-509 87-390 (400)
54 KOG0547 Translocase of outer m 99.3 1.5E-08 3.2E-13 106.5 33.7 417 199-684 117-565 (606)
55 PRK12370 invasion protein regu 99.3 4.4E-09 9.4E-14 121.7 32.8 269 232-510 253-536 (553)
56 KOG2047 mRNA splicing factor [ 99.3 8E-07 1.7E-11 96.6 46.8 494 167-685 108-687 (835)
57 TIGR02521 type_IV_pilW type IV 99.3 3E-09 6.5E-14 108.4 27.4 201 196-403 30-231 (234)
58 PRK12370 invasion protein regu 99.3 2.2E-09 4.9E-14 124.1 29.0 217 176-403 276-501 (553)
59 TIGR02521 type_IV_pilW type IV 99.2 9.1E-09 2E-13 104.8 27.6 200 234-437 30-230 (234)
60 KOG2047 mRNA splicing factor [ 99.2 6.7E-06 1.4E-10 89.6 49.2 497 168-678 145-716 (835)
61 KOG1156 N-terminal acetyltrans 99.2 2.2E-06 4.7E-11 93.7 44.7 419 174-614 20-469 (700)
62 KOG3785 Uncharacterized conser 99.2 5.3E-07 1.2E-11 91.1 36.3 447 175-691 36-496 (557)
63 KOG4318 Bicoid mRNA stability 99.2 2.1E-07 4.5E-12 104.4 36.0 86 337-425 201-286 (1088)
64 KOG3785 Uncharacterized conser 99.2 3.5E-07 7.5E-12 92.5 34.2 419 168-619 64-496 (557)
65 KOG1173 Anaphase-promoting com 99.2 1.8E-07 3.9E-12 100.5 34.0 280 269-557 243-530 (611)
66 PF13041 PPR_2: PPR repeat fam 99.1 9.3E-11 2E-15 87.6 6.2 50 268-317 1-50 (50)
67 KOG1129 TPR repeat-containing 99.1 3.5E-09 7.6E-14 105.6 18.7 229 344-578 227-458 (478)
68 PF13041 PPR_2: PPR repeat fam 99.1 1.5E-10 3.2E-15 86.6 6.7 49 373-421 1-49 (50)
69 KOG1129 TPR repeat-containing 99.1 6.4E-09 1.4E-13 103.8 18.3 225 168-402 230-456 (478)
70 KOG4162 Predicted calmodulin-b 99.1 2.2E-06 4.8E-11 95.4 39.8 406 193-610 319-780 (799)
71 PF12569 NARP1: NMDA receptor- 99.1 4.9E-07 1.1E-11 101.4 35.5 291 168-473 11-333 (517)
72 PF12569 NARP1: NMDA receptor- 99.1 3.2E-07 6.9E-12 102.9 33.6 262 200-473 7-290 (517)
73 KOG4318 Bicoid mRNA stability 99.1 1.4E-08 3E-13 113.5 22.1 270 258-564 13-286 (1088)
74 KOG1840 Kinesin light chain [C 99.0 1.9E-07 4.1E-12 103.4 28.2 235 377-611 201-477 (508)
75 PRK11189 lipoprotein NlpI; Pro 99.0 3.7E-07 7.9E-12 96.9 28.9 219 175-405 40-266 (296)
76 KOG1840 Kinesin light chain [C 99.0 4.4E-07 9.6E-12 100.5 29.9 236 306-576 200-477 (508)
77 KOG1174 Anaphase-promoting com 99.0 1.6E-05 3.5E-10 82.4 38.2 316 298-623 187-510 (564)
78 KOG4340 Uncharacterized conser 99.0 1.3E-06 2.9E-11 86.5 28.7 316 200-541 13-337 (459)
79 cd05804 StaR_like StaR_like; a 98.9 5E-06 1.1E-10 91.2 36.3 201 197-403 6-214 (355)
80 KOG2376 Signal recognition par 98.9 2.5E-05 5.3E-10 84.8 39.5 146 460-608 356-515 (652)
81 KOG0985 Vesicle coat protein c 98.9 3.6E-05 7.8E-10 87.7 42.0 223 136-365 485-749 (1666)
82 PRK11189 lipoprotein NlpI; Pro 98.9 1E-06 2.2E-11 93.5 28.5 94 378-473 67-160 (296)
83 KOG1127 TPR repeat-containing 98.9 5.1E-06 1.1E-10 94.6 34.8 163 444-610 774-949 (1238)
84 KOG1174 Anaphase-promoting com 98.9 4.5E-05 9.7E-10 79.2 38.4 299 276-581 200-503 (564)
85 COG3063 PilF Tfp pilus assembl 98.9 1.1E-06 2.3E-11 84.7 24.9 206 199-413 37-243 (250)
86 KOG4162 Predicted calmodulin-b 98.9 4.1E-05 8.9E-10 85.6 39.6 467 173-688 239-786 (799)
87 cd05804 StaR_like StaR_like; a 98.9 8.3E-06 1.8E-10 89.4 34.8 203 232-438 3-214 (355)
88 KOG0548 Molecular co-chaperone 98.9 1.2E-05 2.5E-10 86.6 33.8 106 168-280 9-114 (539)
89 KOG1127 TPR repeat-containing 98.8 3.3E-05 7.2E-10 88.3 36.8 497 173-688 574-1178(1238)
90 KOG3617 WD40 and TPR repeat-co 98.8 3.5E-05 7.6E-10 86.0 35.9 249 174-472 741-994 (1416)
91 KOG2376 Signal recognition par 98.8 0.00016 3.4E-09 78.8 39.8 420 173-620 24-494 (652)
92 KOG0624 dsRNA-activated protei 98.8 0.00012 2.6E-09 74.3 35.2 310 168-510 45-371 (504)
93 PRK04841 transcriptional regul 98.8 3.7E-05 8.1E-10 95.5 39.6 333 280-612 384-759 (903)
94 COG3063 PilF Tfp pilus assembl 98.7 6.4E-06 1.4E-10 79.5 24.2 195 378-575 38-233 (250)
95 KOG1125 TPR repeat-containing 98.7 2.8E-06 6E-11 92.0 22.6 218 208-436 296-524 (579)
96 PLN02789 farnesyltranstransfer 98.7 1.3E-05 2.8E-10 85.1 27.5 132 173-312 49-183 (320)
97 PRK04841 transcriptional regul 98.7 7E-05 1.5E-09 93.1 38.8 378 199-581 343-763 (903)
98 PLN02789 farnesyltranstransfer 98.7 1.3E-05 2.8E-10 85.1 27.3 224 205-437 45-300 (320)
99 KOG3616 Selective LIM binding 98.7 6.7E-05 1.5E-09 82.6 32.7 377 174-609 457-875 (1636)
100 KOG1125 TPR repeat-containing 98.7 3.8E-06 8.2E-11 91.0 22.6 219 314-541 294-525 (579)
101 PF04733 Coatomer_E: Coatomer 98.6 8.7E-07 1.9E-11 92.7 17.0 247 281-542 12-264 (290)
102 KOG4340 Uncharacterized conser 98.6 0.00013 2.7E-09 72.8 30.2 192 168-372 17-210 (459)
103 KOG3617 WD40 and TPR repeat-co 98.6 0.0011 2.3E-08 74.6 40.2 35 656-690 1330-1364(1416)
104 KOG1914 mRNA cleavage and poly 98.6 0.0013 2.8E-08 71.0 39.4 410 194-612 17-500 (656)
105 PF04733 Coatomer_E: Coatomer 98.6 1.9E-06 4E-11 90.3 16.3 251 350-615 11-267 (290)
106 KOG0624 dsRNA-activated protei 98.5 0.00039 8.4E-09 70.7 31.3 188 387-580 167-372 (504)
107 KOG0548 Molecular co-chaperone 98.5 0.00037 7.9E-09 75.4 32.8 405 138-579 9-456 (539)
108 KOG3616 Selective LIM binding 98.5 0.00077 1.7E-08 74.6 33.8 289 202-538 620-932 (1636)
109 KOG0985 Vesicle coat protein c 98.5 0.0034 7.4E-08 72.3 39.4 32 195-226 982-1013(1666)
110 KOG1070 rRNA processing protei 98.4 0.00013 2.7E-09 86.4 28.3 234 328-567 1447-1689(1710)
111 PF12854 PPR_1: PPR repeat 98.4 4.4E-07 9.4E-12 61.1 4.1 31 371-401 3-33 (34)
112 KOG2053 Mitochondrial inherita 98.4 0.011 2.5E-07 67.8 46.5 481 175-682 23-605 (932)
113 KOG1128 Uncharacterized conser 98.4 2.3E-05 5.1E-10 87.1 19.0 215 342-577 400-615 (777)
114 PF12854 PPR_1: PPR repeat 98.4 6.1E-07 1.3E-11 60.4 4.3 32 265-296 2-33 (34)
115 TIGR03302 OM_YfiO outer membra 98.3 0.00012 2.5E-09 75.1 22.6 185 195-403 31-231 (235)
116 KOG1070 rRNA processing protei 98.3 0.00038 8.3E-09 82.5 27.7 203 307-514 1460-1668(1710)
117 KOG1128 Uncharacterized conser 98.3 5.4E-05 1.2E-09 84.2 19.9 218 372-610 395-613 (777)
118 PRK15179 Vi polysaccharide bio 98.3 0.00022 4.9E-09 83.3 26.2 148 193-347 82-229 (694)
119 KOG3081 Vesicle coat complex C 98.3 0.00034 7.4E-09 69.1 22.6 236 279-530 17-257 (299)
120 COG5010 TadD Flp pilus assembl 98.2 7.7E-05 1.7E-09 73.7 16.9 152 171-330 76-227 (257)
121 TIGR03302 OM_YfiO outer membra 98.2 0.00017 3.7E-09 73.8 20.8 60 519-578 171-232 (235)
122 KOG1914 mRNA cleavage and poly 98.2 0.018 3.9E-07 62.6 41.4 411 232-684 17-500 (656)
123 PRK10370 formate-dependent nit 98.2 6.7E-05 1.4E-09 74.2 16.2 120 210-335 52-174 (198)
124 COG5010 TadD Flp pilus assembl 98.2 0.00031 6.6E-09 69.6 20.2 158 239-400 70-227 (257)
125 PRK10370 formate-dependent nit 98.1 9.6E-05 2.1E-09 73.1 16.4 120 248-370 52-174 (198)
126 PRK15359 type III secretion sy 98.1 0.00015 3.2E-09 67.8 16.7 109 181-299 13-121 (144)
127 PRK14720 transcript cleavage f 98.1 0.0012 2.6E-08 78.1 27.6 240 194-491 28-268 (906)
128 PRK14720 transcript cleavage f 98.1 0.00089 1.9E-08 79.1 26.5 190 134-369 5-198 (906)
129 KOG3081 Vesicle coat complex C 98.1 0.0022 4.8E-08 63.5 24.8 252 243-511 16-273 (299)
130 KOG2053 Mitochondrial inherita 98.1 0.039 8.4E-07 63.7 50.4 457 127-607 39-564 (932)
131 PRK15179 Vi polysaccharide bio 98.1 0.00043 9.4E-09 81.0 22.9 147 232-382 83-229 (694)
132 TIGR02552 LcrH_SycD type III s 98.0 0.00018 3.8E-09 66.5 15.2 109 184-299 6-114 (135)
133 PRK15359 type III secretion sy 98.0 0.00038 8.2E-09 65.1 17.2 95 273-369 27-121 (144)
134 COG4783 Putative Zn-dependent 97.9 0.0025 5.5E-08 68.5 23.5 200 355-578 252-454 (484)
135 COG4783 Putative Zn-dependent 97.9 0.00084 1.8E-08 72.1 18.8 147 199-369 308-454 (484)
136 KOG3060 Uncharacterized conser 97.9 0.0063 1.4E-07 60.0 22.6 128 201-334 56-183 (289)
137 TIGR02552 LcrH_SycD type III s 97.8 0.00081 1.8E-08 62.1 15.2 110 219-334 5-114 (135)
138 KOG3060 Uncharacterized conser 97.8 0.018 4E-07 56.8 24.4 186 284-473 26-219 (289)
139 TIGR00756 PPR pentatricopeptid 97.7 6.9E-05 1.5E-09 50.7 4.6 33 377-409 2-34 (35)
140 TIGR00756 PPR pentatricopeptid 97.7 6.4E-05 1.4E-09 50.9 4.2 33 447-479 2-34 (35)
141 PF09976 TPR_21: Tetratricopep 97.6 0.0034 7.3E-08 58.8 16.3 125 199-330 14-143 (145)
142 PF13812 PPR_3: Pentatricopept 97.6 9.1E-05 2E-09 49.9 3.7 32 272-303 3-34 (34)
143 PF13812 PPR_3: Pentatricopept 97.6 0.00011 2.4E-09 49.4 4.2 32 377-408 3-34 (34)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0025 5.4E-08 69.2 16.2 122 415-541 174-295 (395)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0026 5.7E-08 69.0 16.3 127 235-367 169-295 (395)
146 PF09976 TPR_21: Tetratricopep 97.5 0.0036 7.7E-08 58.6 15.0 85 278-364 56-142 (145)
147 KOG2041 WD40 repeat protein [G 97.5 0.26 5.5E-06 55.3 30.3 238 194-473 689-951 (1189)
148 cd00189 TPR Tetratricopeptide 97.5 0.0018 3.8E-08 54.4 11.5 92 201-297 4-95 (100)
149 PF10037 MRP-S27: Mitochondria 97.4 0.0016 3.6E-08 70.9 12.7 122 232-353 63-186 (429)
150 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0055 1.2E-07 54.8 13.8 100 199-299 4-105 (119)
151 PLN03088 SGT1, suppressor of 97.3 0.0048 1E-07 67.2 15.0 91 204-299 9-99 (356)
152 PF14938 SNAP: Soluble NSF att 97.3 0.054 1.2E-06 57.0 22.5 100 494-594 129-245 (282)
153 cd00189 TPR Tetratricopeptide 97.3 0.0048 1E-07 51.7 12.2 18 348-365 42-59 (100)
154 PF08579 RPM2: Mitochondrial r 97.3 0.0043 9.3E-08 53.4 11.0 72 350-421 35-115 (120)
155 PF01535 PPR: PPR repeat; Int 97.3 0.00028 6.1E-09 46.2 3.1 27 378-404 3-29 (31)
156 PF10037 MRP-S27: Mitochondria 97.2 0.0036 7.8E-08 68.3 13.1 116 304-419 65-182 (429)
157 PF14938 SNAP: Soluble NSF att 97.2 0.17 3.7E-06 53.2 25.4 58 485-542 160-224 (282)
158 PF08579 RPM2: Mitochondrial r 97.2 0.0042 9.2E-08 53.4 10.4 72 421-492 36-116 (120)
159 PF01535 PPR: PPR repeat; Int 97.2 0.00036 7.8E-09 45.7 3.1 28 447-474 2-29 (31)
160 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.013 2.8E-07 52.3 13.9 12 527-538 89-100 (119)
161 KOG0550 Molecular chaperone (D 97.1 0.029 6.3E-07 59.2 17.6 285 207-543 59-350 (486)
162 KOG0550 Molecular chaperone (D 97.1 0.29 6.2E-06 52.0 24.6 270 171-473 59-349 (486)
163 CHL00033 ycf3 photosystem I as 97.1 0.0082 1.8E-07 57.8 13.0 84 196-281 34-117 (168)
164 PLN03088 SGT1, suppressor of 97.1 0.01 2.2E-07 64.6 14.9 94 168-267 9-102 (356)
165 KOG0553 TPR repeat-containing 97.1 0.0061 1.3E-07 61.8 11.7 104 204-314 88-191 (304)
166 PRK15363 pathogenicity island 97.1 0.031 6.7E-07 51.9 15.3 85 490-575 45-129 (157)
167 PF06239 ECSIT: Evolutionarily 97.0 0.011 2.3E-07 57.5 12.5 88 232-319 44-152 (228)
168 PRK15363 pathogenicity island 97.0 0.012 2.6E-07 54.5 12.3 90 203-297 41-130 (157)
169 PRK02603 photosystem I assembl 97.0 0.029 6.2E-07 54.2 15.7 92 197-291 35-127 (172)
170 PF06239 ECSIT: Evolutionarily 97.0 0.0085 1.9E-07 58.1 11.4 34 391-424 119-152 (228)
171 PRK10866 outer membrane biogen 97.0 0.14 3E-06 52.5 20.9 80 197-280 32-114 (243)
172 PF12895 Apc3: Anaphase-promot 97.0 0.0013 2.9E-08 55.0 5.2 78 211-294 3-82 (84)
173 COG4700 Uncharacterized protei 97.0 0.19 4.1E-06 47.4 19.4 130 194-328 86-216 (251)
174 PF12895 Apc3: Anaphase-promot 96.9 0.002 4.4E-08 53.9 6.1 46 494-539 3-50 (84)
175 PRK10866 outer membrane biogen 96.8 0.47 1E-05 48.5 23.7 50 489-538 184-236 (243)
176 PRK02603 photosystem I assembl 96.8 0.048 1E-06 52.7 15.6 62 237-298 37-100 (172)
177 KOG0553 TPR repeat-containing 96.8 0.016 3.4E-07 58.9 12.1 97 171-275 91-187 (304)
178 PF05843 Suf: Suppressor of fo 96.8 0.025 5.4E-07 59.4 14.2 82 390-473 51-135 (280)
179 PRK10153 DNA-binding transcrip 96.8 0.081 1.7E-06 60.3 19.2 63 305-369 420-482 (517)
180 CHL00033 ycf3 photosystem I as 96.8 0.028 6.1E-07 54.0 13.4 64 271-334 36-101 (168)
181 PF05843 Suf: Suppressor of fo 96.7 0.026 5.7E-07 59.2 13.8 81 286-368 52-135 (280)
182 PF14559 TPR_19: Tetratricopep 96.7 0.0067 1.4E-07 48.2 7.2 53 208-264 2-54 (68)
183 PF12688 TPR_5: Tetratrico pep 96.6 0.08 1.7E-06 47.3 14.0 89 453-541 9-102 (120)
184 PRK10153 DNA-binding transcrip 96.6 0.18 3.9E-06 57.5 19.9 67 444-512 419-485 (517)
185 PF13414 TPR_11: TPR repeat; P 96.5 0.0094 2E-07 47.5 7.0 63 197-263 3-66 (69)
186 PF12688 TPR_5: Tetratrico pep 96.5 0.1 2.2E-06 46.7 14.0 94 167-262 7-102 (120)
187 COG4235 Cytochrome c biogenesi 96.5 0.083 1.8E-06 54.1 15.0 99 195-298 154-255 (287)
188 KOG2280 Vacuolar assembly/sort 96.5 2.4 5.2E-05 48.6 28.3 110 447-574 686-795 (829)
189 KOG2041 WD40 repeat protein [G 96.4 1.6 3.5E-05 49.3 25.1 191 209-438 746-951 (1189)
190 PF13432 TPR_16: Tetratricopep 96.4 0.011 2.3E-07 46.6 6.6 55 205-263 5-59 (65)
191 KOG1130 Predicted G-alpha GTPa 96.4 0.032 6.9E-07 58.6 11.4 130 481-610 196-341 (639)
192 PF04840 Vps16_C: Vps16, C-ter 96.4 1.8 4E-05 46.1 28.1 79 382-470 184-262 (319)
193 KOG1130 Predicted G-alpha GTPa 96.3 0.039 8.4E-07 58.0 11.5 55 204-258 24-78 (639)
194 KOG2796 Uncharacterized conser 96.2 1.5 3.2E-05 43.9 21.2 130 413-542 180-314 (366)
195 PF14559 TPR_19: Tetratricopep 96.2 0.02 4.4E-07 45.4 7.3 63 246-311 2-64 (68)
196 PF13432 TPR_16: Tetratricopep 96.2 0.019 4.1E-07 45.1 7.0 57 241-298 3-59 (65)
197 PF13525 YfiO: Outer membrane 96.2 0.4 8.7E-06 47.6 17.9 68 199-267 7-74 (203)
198 PF04840 Vps16_C: Vps16, C-ter 96.1 2.5 5.5E-05 45.0 28.2 102 416-536 183-284 (319)
199 PF13525 YfiO: Outer membrane 96.1 1 2.2E-05 44.7 20.2 48 486-533 147-197 (203)
200 PF13414 TPR_11: TPR repeat; P 96.0 0.032 7E-07 44.4 7.4 60 482-541 5-65 (69)
201 KOG1538 Uncharacterized conser 96.0 0.82 1.8E-05 51.1 19.9 101 409-543 746-846 (1081)
202 COG4700 Uncharacterized protei 96.0 1.5 3.2E-05 41.6 18.8 57 380-436 94-150 (251)
203 KOG2796 Uncharacterized conser 95.8 2.5 5.4E-05 42.4 23.5 129 309-438 181-314 (366)
204 PF03704 BTAD: Bacterial trans 95.7 0.17 3.8E-06 47.2 12.5 70 272-342 64-138 (146)
205 COG3898 Uncharacterized membra 95.7 3.5 7.7E-05 43.7 30.6 311 177-514 69-397 (531)
206 COG4235 Cytochrome c biogenesi 95.7 0.43 9.2E-06 49.0 15.4 29 269-297 155-183 (287)
207 PRK10803 tol-pal system protei 95.4 0.29 6.3E-06 50.5 13.7 98 483-580 146-248 (263)
208 PF13371 TPR_9: Tetratricopept 95.4 0.054 1.2E-06 43.6 6.7 57 205-265 3-59 (73)
209 PRK10803 tol-pal system protei 95.4 0.27 5.8E-06 50.8 13.2 96 199-298 145-245 (263)
210 KOG2114 Vacuolar assembly/sort 95.2 4.5 9.8E-05 47.1 22.9 43 557-603 713-755 (933)
211 PRK15331 chaperone protein Sic 95.1 1.5 3.3E-05 41.1 15.8 90 452-542 44-133 (165)
212 PF13281 DUF4071: Domain of un 95.0 4.1 8.8E-05 44.0 21.1 33 353-385 195-227 (374)
213 PF13281 DUF4071: Domain of un 95.0 3.6 7.8E-05 44.4 20.7 76 240-315 146-227 (374)
214 COG0457 NrfG FOG: TPR repeat [ 95.0 4 8.6E-05 40.0 30.7 165 341-508 60-230 (291)
215 COG5107 RNA14 Pre-mRNA 3'-end 95.0 6.6 0.00014 42.5 36.3 131 446-578 398-531 (660)
216 PF03704 BTAD: Bacterial trans 94.9 0.15 3.2E-06 47.6 9.0 57 239-296 66-122 (146)
217 KOG2280 Vacuolar assembly/sort 94.9 9.7 0.00021 44.0 24.9 328 241-607 443-793 (829)
218 KOG1538 Uncharacterized conser 94.8 2.8 6.1E-05 47.0 19.2 216 303-542 554-801 (1081)
219 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.69 1.5E-05 50.5 14.2 66 232-298 72-140 (453)
220 PLN03098 LPA1 LOW PSII ACCUMUL 94.6 0.42 9E-06 52.2 12.2 67 194-264 72-141 (453)
221 PF10300 DUF3808: Protein of u 94.5 1.2 2.7E-05 50.3 16.7 83 250-334 248-334 (468)
222 PF12921 ATP13: Mitochondrial 94.4 0.46 9.9E-06 42.9 10.5 46 407-452 49-95 (126)
223 PF04053 Coatomer_WDAD: Coatom 94.4 0.71 1.5E-05 51.5 14.2 131 198-364 296-426 (443)
224 COG0457 NrfG FOG: TPR repeat [ 94.3 5.8 0.00013 38.8 31.2 222 353-578 36-265 (291)
225 PF13371 TPR_9: Tetratricopept 94.3 0.2 4.3E-06 40.2 7.2 52 490-541 5-56 (73)
226 COG3898 Uncharacterized membra 94.2 9 0.0002 40.8 34.2 284 248-548 97-397 (531)
227 COG3118 Thioredoxin domain-con 94.1 3 6.6E-05 42.8 16.4 146 204-356 141-288 (304)
228 PF09205 DUF1955: Domain of un 94.1 2.3 5E-05 38.0 13.4 62 449-511 90-151 (161)
229 PRK15331 chaperone protein Sic 93.8 0.69 1.5E-05 43.3 10.4 86 208-298 48-133 (165)
230 KOG1585 Protein required for f 93.7 8.3 0.00018 38.5 19.3 174 342-541 33-217 (308)
231 PF13424 TPR_12: Tetratricopep 93.7 0.16 3.6E-06 41.4 5.7 25 307-331 48-72 (78)
232 PF12921 ATP13: Mitochondrial 93.6 0.85 1.8E-05 41.2 10.5 50 441-490 48-98 (126)
233 COG4785 NlpI Lipoprotein NlpI, 93.6 1.6 3.5E-05 42.5 12.6 31 655-687 238-268 (297)
234 PF13424 TPR_12: Tetratricopep 93.6 0.41 8.9E-06 39.0 7.9 59 482-540 7-72 (78)
235 PF07079 DUF1347: Protein of u 93.6 13 0.00029 40.4 44.1 432 168-612 13-523 (549)
236 smart00299 CLH Clathrin heavy 93.5 4 8.7E-05 37.6 15.5 40 204-247 14-53 (140)
237 KOG3941 Intermediate in Toll s 93.4 0.5 1.1E-05 47.6 9.2 31 394-424 142-172 (406)
238 smart00299 CLH Clathrin heavy 93.3 3 6.5E-05 38.4 14.3 125 239-386 11-136 (140)
239 COG4649 Uncharacterized protei 93.3 7.1 0.00015 36.8 15.8 137 196-335 58-197 (221)
240 COG3118 Thioredoxin domain-con 93.3 6.5 0.00014 40.5 17.2 119 315-437 144-263 (304)
241 PF04053 Coatomer_WDAD: Coatom 93.2 2.1 4.5E-05 47.8 15.1 155 351-538 272-426 (443)
242 KOG4555 TPR repeat-containing 93.1 2.2 4.7E-05 38.1 11.7 91 205-300 51-145 (175)
243 PF10300 DUF3808: Protein of u 93.1 4.9 0.00011 45.5 18.1 85 494-578 247-334 (468)
244 KOG3941 Intermediate in Toll s 93.0 0.56 1.2E-05 47.2 9.0 87 250-355 87-173 (406)
245 PF13170 DUF4003: Protein of u 93.0 7.6 0.00016 40.9 18.1 127 427-555 79-223 (297)
246 PF09205 DUF1955: Domain of un 92.9 4.5 9.8E-05 36.2 13.3 63 483-545 89-151 (161)
247 KOG4555 TPR repeat-containing 92.9 2.7 5.8E-05 37.5 11.9 89 454-544 52-145 (175)
248 COG4105 ComL DNA uptake lipopr 92.8 12 0.00026 37.8 20.8 82 198-281 36-117 (254)
249 KOG1258 mRNA processing protei 92.7 21 0.00046 40.4 33.3 135 195-334 43-180 (577)
250 KOG0543 FKBP-type peptidyl-pro 92.5 2.1 4.7E-05 45.7 13.1 95 341-438 258-354 (397)
251 PF13512 TPR_18: Tetratricopep 92.4 2.4 5.2E-05 38.8 11.6 83 199-282 12-94 (142)
252 PF04184 ST7: ST7 protein; In 92.4 7.7 0.00017 42.9 17.1 59 310-368 264-323 (539)
253 PF04184 ST7: ST7 protein; In 92.2 3.2 7E-05 45.6 14.2 55 521-575 266-321 (539)
254 KOG0543 FKBP-type peptidyl-pro 92.2 1.9 4.1E-05 46.2 12.2 96 235-333 257-354 (397)
255 COG1729 Uncharacterized protei 92.1 1.8 3.8E-05 44.0 11.4 96 482-578 144-244 (262)
256 COG4649 Uncharacterized protei 92.1 9.6 0.00021 36.0 15.0 135 166-304 63-201 (221)
257 PF13428 TPR_14: Tetratricopep 92.0 0.44 9.6E-06 33.9 5.2 39 199-241 3-41 (44)
258 PRK11906 transcriptional regul 91.9 6.6 0.00014 43.2 16.2 117 177-298 274-400 (458)
259 PF13170 DUF4003: Protein of u 91.9 19 0.00041 38.0 21.6 129 251-381 78-223 (297)
260 COG4785 NlpI Lipoprotein NlpI, 91.8 14 0.0003 36.2 18.0 186 168-368 72-265 (297)
261 PF08631 SPO22: Meiosis protei 91.6 20 0.00043 37.5 27.0 101 447-549 86-192 (278)
262 KOG1585 Protein required for f 91.6 16 0.00035 36.5 18.3 86 237-332 33-118 (308)
263 KOG1920 IkappaB kinase complex 91.5 42 0.00091 41.2 24.5 108 450-574 944-1051(1265)
264 PF08631 SPO22: Meiosis protei 91.3 21 0.00045 37.4 26.8 62 307-369 86-150 (278)
265 KOG1920 IkappaB kinase complex 91.2 45 0.00098 40.9 24.2 158 354-541 894-1053(1265)
266 PF07079 DUF1347: Protein of u 91.1 27 0.00058 38.2 40.7 370 208-590 90-531 (549)
267 KOG2610 Uncharacterized conser 91.1 4.2 9E-05 42.3 12.8 116 247-365 115-234 (491)
268 PF04097 Nic96: Nup93/Nic96; 91.0 13 0.00028 43.7 18.8 20 593-612 514-533 (613)
269 KOG1550 Extracellular protein 90.9 37 0.0008 39.5 25.8 181 251-441 228-428 (552)
270 PF13428 TPR_14: Tetratricopep 90.9 0.57 1.2E-05 33.3 4.8 40 237-277 3-42 (44)
271 PF07035 Mic1: Colon cancer-as 90.8 15 0.00032 34.9 15.4 134 361-508 15-148 (167)
272 PF13512 TPR_18: Tetratricopep 90.8 5 0.00011 36.8 11.8 54 491-544 21-77 (142)
273 PRK11906 transcriptional regul 90.3 8.3 0.00018 42.5 15.0 113 177-296 320-433 (458)
274 KOG2610 Uncharacterized conser 90.1 9.6 0.00021 39.7 14.3 156 206-367 112-274 (491)
275 COG3629 DnrI DNA-binding trans 90.0 3.8 8.2E-05 42.3 11.7 79 235-314 153-236 (280)
276 COG3629 DnrI DNA-binding trans 89.7 2.9 6.2E-05 43.2 10.5 78 198-279 154-236 (280)
277 KOG1941 Acetylcholine receptor 89.4 15 0.00033 38.7 15.2 198 377-576 45-273 (518)
278 COG5107 RNA14 Pre-mRNA 3'-end 89.4 36 0.00079 37.1 32.1 418 181-615 29-533 (660)
279 KOG1550 Extracellular protein 89.4 49 0.0011 38.5 25.5 180 213-407 228-429 (552)
280 COG1729 Uncharacterized protei 89.2 6.8 0.00015 39.9 12.5 99 199-299 144-244 (262)
281 KOG2114 Vacuolar assembly/sort 88.6 8.6 0.00019 44.9 14.1 118 308-435 337-456 (933)
282 PF02259 FAT: FAT domain; Int 87.8 44 0.00094 36.0 23.8 27 377-403 148-174 (352)
283 PF09613 HrpB1_HrpK: Bacterial 87.0 27 0.00059 32.8 14.2 93 491-585 21-113 (160)
284 KOG1464 COP9 signalosome, subu 86.3 41 0.00088 34.1 17.5 207 335-541 21-258 (440)
285 COG4105 ComL DNA uptake lipopr 86.1 42 0.0009 34.1 23.9 54 316-369 45-100 (254)
286 PRK09687 putative lyase; Provi 86.0 48 0.001 34.7 27.1 119 341-473 143-262 (280)
287 smart00463 SMR Small MutS-rela 85.9 1.9 4.1E-05 35.4 5.4 58 700-762 2-68 (80)
288 PF13431 TPR_17: Tetratricopep 85.4 1.1 2.3E-05 30.0 3.0 23 232-254 10-32 (34)
289 PF09613 HrpB1_HrpK: Bacterial 85.0 34 0.00074 32.1 14.1 53 208-264 21-73 (160)
290 PF13176 TPR_7: Tetratricopept 84.7 1.9 4.1E-05 29.1 4.1 26 659-684 2-27 (36)
291 PF10345 Cohesin_load: Cohesin 84.4 94 0.002 36.7 40.6 63 492-554 373-452 (608)
292 PF07035 Mic1: Colon cancer-as 83.8 40 0.00088 32.0 15.2 24 263-286 22-45 (167)
293 KOG4570 Uncharacterized conser 83.8 10 0.00023 39.2 10.4 100 232-335 61-165 (418)
294 PF10602 RPN7: 26S proteasome 83.4 17 0.00036 35.2 11.6 60 447-506 38-99 (177)
295 PF10602 RPN7: 26S proteasome 83.2 27 0.00059 33.7 13.0 62 516-577 38-101 (177)
296 KOG4234 TPR repeat-containing 82.1 13 0.00029 35.9 9.8 86 455-542 105-196 (271)
297 KOG2066 Vacuolar assembly/sort 81.8 1.2E+02 0.0025 35.9 22.4 102 312-422 363-467 (846)
298 KOG0276 Vesicle coat complex C 81.8 17 0.00038 40.9 11.9 152 207-401 596-747 (794)
299 PF11207 DUF2989: Protein of u 81.4 24 0.00052 34.4 11.5 72 214-289 123-197 (203)
300 PF02259 FAT: FAT domain; Int 81.2 83 0.0018 33.8 22.2 194 168-368 5-212 (352)
301 KOG2066 Vacuolar assembly/sort 81.2 1.2E+02 0.0026 35.7 28.3 105 204-317 363-467 (846)
302 KOG2396 HAT (Half-A-TPR) repea 80.3 1E+02 0.0023 34.4 36.6 88 180-274 90-178 (568)
303 PF13176 TPR_7: Tetratricopept 80.1 3.9 8.5E-05 27.5 4.3 23 448-470 2-24 (36)
304 TIGR02561 HrpB1_HrpK type III 79.9 37 0.0008 31.4 11.5 52 209-264 22-73 (153)
305 PF13431 TPR_17: Tetratricopep 79.6 2.1 4.6E-05 28.5 2.7 31 504-534 3-33 (34)
306 COG2976 Uncharacterized protei 78.9 66 0.0014 31.3 13.8 91 487-579 96-189 (207)
307 KOG4234 TPR repeat-containing 78.6 21 0.00045 34.6 9.8 93 488-581 103-200 (271)
308 COG3947 Response regulator con 78.0 90 0.002 32.3 16.1 54 347-401 286-339 (361)
309 PF10345 Cohesin_load: Cohesin 77.8 1.5E+02 0.0033 34.9 43.5 186 180-366 40-251 (608)
310 PF13929 mRNA_stabil: mRNA sta 77.5 63 0.0014 33.5 13.7 138 210-350 141-288 (292)
311 PF00515 TPR_1: Tetratricopept 77.3 5.6 0.00012 26.0 4.4 27 447-473 3-29 (34)
312 KOG4570 Uncharacterized conser 76.7 30 0.00065 35.9 11.0 100 372-473 61-163 (418)
313 COG3947 Response regulator con 76.5 99 0.0022 32.0 15.6 54 417-471 286-339 (361)
314 COG1747 Uncharacterized N-term 76.1 1.4E+02 0.003 33.5 22.0 178 408-593 64-248 (711)
315 PF08424 NRDE-2: NRDE-2, neces 75.8 1.2E+02 0.0025 32.5 17.6 138 194-336 16-185 (321)
316 KOG4648 Uncharacterized conser 75.6 7 0.00015 40.7 6.3 90 418-510 105-195 (536)
317 TIGR02561 HrpB1_HrpK type III 75.4 69 0.0015 29.7 13.1 53 492-544 22-74 (153)
318 KOG0890 Protein kinase of the 74.6 3.2E+02 0.0068 36.9 26.5 315 240-578 1388-1731(2382)
319 PF13374 TPR_10: Tetratricopep 74.4 5.9 0.00013 27.2 4.1 27 658-684 4-30 (42)
320 PF07719 TPR_2: Tetratricopept 74.3 5.8 0.00012 25.8 3.8 29 659-687 4-32 (34)
321 PF00515 TPR_1: Tetratricopept 74.2 6.2 0.00013 25.8 3.9 30 658-687 3-32 (34)
322 COG4455 ImpE Protein of avirul 73.9 17 0.00037 35.7 8.0 76 200-279 4-81 (273)
323 KOG0276 Vesicle coat complex C 72.9 64 0.0014 36.7 13.1 134 161-331 614-747 (794)
324 KOG1941 Acetylcholine receptor 72.0 1.4E+02 0.0031 31.8 23.0 128 309-436 126-272 (518)
325 KOG1586 Protein required for f 71.9 1.1E+02 0.0025 30.6 22.5 17 526-542 166-182 (288)
326 PF06552 TOM20_plant: Plant sp 71.4 50 0.0011 31.6 10.4 66 178-249 8-83 (186)
327 PF13929 mRNA_stabil: mRNA sta 70.7 1.4E+02 0.003 31.1 16.2 116 284-399 142-262 (292)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 70.6 26 0.00057 29.7 7.4 62 530-592 23-84 (103)
329 PF07719 TPR_2: Tetratricopept 70.1 12 0.00025 24.3 4.6 27 200-226 4-30 (34)
330 PRK09687 putative lyase; Provi 69.4 1.5E+02 0.0033 31.0 28.9 22 555-577 241-262 (280)
331 PF13181 TPR_8: Tetratricopept 67.9 12 0.00025 24.4 4.1 28 659-686 4-31 (34)
332 COG2976 Uncharacterized protei 67.5 1.3E+02 0.0028 29.4 14.7 85 280-369 99-188 (207)
333 KOG1586 Protein required for f 67.5 1.4E+02 0.0031 30.0 22.2 25 490-514 164-188 (288)
334 PF13374 TPR_10: Tetratricopep 66.9 13 0.00027 25.4 4.4 26 237-262 4-29 (42)
335 KOG2063 Vacuolar assembly/sort 66.4 3.1E+02 0.0067 33.5 26.0 116 377-492 506-638 (877)
336 PF06552 TOM20_plant: Plant sp 65.7 47 0.001 31.8 9.0 111 213-336 7-138 (186)
337 PF11207 DUF2989: Protein of u 65.7 49 0.0011 32.3 9.4 41 459-499 154-197 (203)
338 PF07575 Nucleopor_Nup85: Nup8 65.1 1.1E+02 0.0024 35.8 14.2 35 388-427 310-344 (566)
339 COG0790 FOG: TPR repeat, SEL1 64.8 1.8E+02 0.004 30.3 21.9 148 175-335 55-221 (292)
340 PF02284 COX5A: Cytochrome c o 64.6 75 0.0016 27.3 9.0 59 532-592 28-87 (108)
341 cd00923 Cyt_c_Oxidase_Va Cytoc 64.4 42 0.00092 28.5 7.4 44 289-332 26-69 (103)
342 KOG4648 Uncharacterized conser 62.0 28 0.0006 36.6 7.2 89 452-542 104-193 (536)
343 PF02284 COX5A: Cytochrome c o 61.6 51 0.0011 28.3 7.5 47 288-334 28-74 (108)
344 PF10366 Vps39_1: Vacuolar sor 61.6 23 0.0005 31.0 5.9 27 658-684 41-67 (108)
345 TIGR02508 type_III_yscG type I 61.4 76 0.0017 27.2 8.4 53 242-300 46-98 (115)
346 COG2909 MalT ATP-dependent tra 60.9 3.7E+02 0.008 32.5 29.4 224 316-539 426-684 (894)
347 KOG4642 Chaperone-dependent E3 60.7 30 0.00066 34.6 6.9 107 96-206 13-126 (284)
348 COG4455 ImpE Protein of avirul 60.3 47 0.001 32.8 8.0 75 239-314 5-81 (273)
349 PHA02875 ankyrin repeat protei 59.4 1.2E+02 0.0027 33.5 13.0 12 346-357 38-49 (413)
350 KOG1258 mRNA processing protei 59.3 3.3E+02 0.007 31.3 37.1 181 409-596 296-487 (577)
351 PF13181 TPR_8: Tetratricopept 58.4 17 0.00037 23.6 3.6 25 448-472 4-28 (34)
352 PF00637 Clathrin: Region in C 56.7 2.9 6.4E-05 38.6 -0.6 45 248-292 20-64 (143)
353 PF00637 Clathrin: Region in C 56.5 3 6.4E-05 38.6 -0.6 53 312-364 14-66 (143)
354 PRK11619 lytic murein transgly 55.1 4.3E+02 0.0093 31.4 36.8 405 149-587 83-514 (644)
355 PHA02875 ankyrin repeat protei 54.9 1.4E+02 0.0031 33.0 12.5 76 246-329 10-89 (413)
356 KOG2297 Predicted translation 54.2 2.8E+02 0.0061 29.0 20.5 30 142-171 40-69 (412)
357 PF07721 TPR_4: Tetratricopept 53.2 15 0.00033 22.5 2.5 20 661-680 6-25 (26)
358 PF13174 TPR_6: Tetratricopept 52.3 23 0.00051 22.5 3.5 22 204-225 7-28 (33)
359 KOG2062 26S proteasome regulat 52.1 4.7E+02 0.01 31.0 28.5 31 371-404 209-239 (929)
360 COG5159 RPN6 26S proteasome re 51.2 3E+02 0.0065 28.5 18.7 160 346-505 9-190 (421)
361 COG1747 Uncharacterized N-term 50.6 4.2E+02 0.009 30.0 25.6 179 303-489 64-248 (711)
362 PF07163 Pex26: Pex26 protein; 50.6 1.7E+02 0.0037 30.2 10.5 87 312-398 90-181 (309)
363 COG2909 MalT ATP-dependent tra 50.5 5.4E+02 0.012 31.2 32.6 225 281-505 426-684 (894)
364 COG5187 RPN7 26S proteasome re 50.2 3.1E+02 0.0068 28.4 15.0 95 480-576 115-219 (412)
365 PRK10941 hypothetical protein; 48.8 1.9E+02 0.0041 30.1 11.0 56 241-297 187-242 (269)
366 KOG4642 Chaperone-dependent E3 48.6 2.6E+02 0.0055 28.3 11.1 24 341-364 118-141 (284)
367 KOG2034 Vacuolar sorting prote 47.8 5.9E+02 0.013 30.9 25.9 48 345-401 509-556 (911)
368 smart00028 TPR Tetratricopepti 47.7 31 0.00066 20.9 3.5 29 658-686 3-31 (34)
369 PF13174 TPR_6: Tetratricopept 47.7 29 0.00064 22.0 3.4 24 240-263 5-28 (33)
370 PF01713 Smr: Smr domain; Int 47.4 38 0.00081 27.8 4.7 53 702-761 1-60 (83)
371 TIGR03504 FimV_Cterm FimV C-te 47.0 40 0.00087 24.0 4.0 22 520-541 5-26 (44)
372 PRK15180 Vi polysaccharide bio 46.8 4.5E+02 0.0099 29.3 28.0 117 175-299 303-420 (831)
373 TIGR02508 type_III_yscG type I 44.8 1.6E+02 0.0035 25.3 7.8 52 557-614 47-98 (115)
374 PF13934 ELYS: Nuclear pore co 43.9 3.5E+02 0.0076 27.2 12.7 21 203-223 114-134 (226)
375 PF11838 ERAP1_C: ERAP1-like C 43.8 4.1E+02 0.009 28.0 18.2 80 321-403 146-229 (324)
376 TIGR03504 FimV_Cterm FimV C-te 43.0 56 0.0012 23.3 4.2 24 486-509 5-28 (44)
377 PF09477 Type_III_YscG: Bacter 41.9 2.4E+02 0.0051 24.6 10.0 30 268-299 69-98 (116)
378 KOG1464 COP9 signalosome, subu 41.7 4.1E+02 0.0088 27.3 22.6 207 299-506 20-257 (440)
379 PF09670 Cas_Cas02710: CRISPR- 41.3 5E+02 0.011 28.5 13.6 51 457-508 143-197 (379)
380 PF10579 Rapsyn_N: Rapsyn N-te 41.2 88 0.0019 25.5 5.5 13 496-508 22-34 (80)
381 KOG0687 26S proteasome regulat 40.9 4.7E+02 0.01 27.8 19.2 92 483-576 107-208 (393)
382 KOG0686 COP9 signalosome, subu 40.8 5.3E+02 0.011 28.3 14.6 64 235-298 150-215 (466)
383 KOG0403 Neoplastic transformat 40.4 5.5E+02 0.012 28.5 20.4 60 517-577 512-571 (645)
384 KOG0376 Serine-threonine phosp 40.4 45 0.00097 36.9 5.1 106 204-316 11-116 (476)
385 PF09986 DUF2225: Uncharacteri 40.1 3.9E+02 0.0085 26.6 12.1 27 518-544 169-195 (214)
386 PF11846 DUF3366: Domain of un 39.7 65 0.0014 31.5 5.9 52 176-227 123-174 (193)
387 PF04097 Nic96: Nup93/Nic96; 39.4 7.1E+02 0.015 29.4 26.0 23 665-690 514-536 (613)
388 KOG4507 Uncharacterized conser 39.0 96 0.0021 35.2 7.3 137 407-544 568-706 (886)
389 PF07163 Pex26: Pex26 protein; 38.8 2.7E+02 0.006 28.8 9.9 87 204-293 90-181 (309)
390 KOG2063 Vacuolar assembly/sort 37.4 8.7E+02 0.019 29.9 19.6 28 199-226 506-533 (877)
391 KOG0376 Serine-threonine phosp 37.2 58 0.0013 36.0 5.3 103 455-561 14-117 (476)
392 PF10579 Rapsyn_N: Rapsyn N-te 37.2 99 0.0021 25.2 5.3 47 457-503 18-66 (80)
393 PF08311 Mad3_BUB1_I: Mad3/BUB 36.7 2.5E+02 0.0055 25.2 8.7 43 532-574 81-124 (126)
394 PF04190 DUF410: Protein of un 36.5 5E+02 0.011 26.8 17.7 26 338-363 88-113 (260)
395 PF08424 NRDE-2: NRDE-2, neces 36.3 5.6E+02 0.012 27.3 18.5 60 462-522 48-107 (321)
396 PF10475 DUF2450: Protein of u 35.6 2.9E+02 0.0063 29.0 10.3 24 477-500 194-217 (291)
397 PRK13342 recombination factor 35.1 6.7E+02 0.014 27.8 18.9 41 380-420 232-275 (413)
398 COG5187 RPN7 26S proteasome re 34.9 5.5E+02 0.012 26.8 14.8 96 444-541 114-219 (412)
399 PF14689 SPOB_a: Sensor_kinase 34.7 85 0.0018 24.2 4.5 20 486-505 29-48 (62)
400 PF04190 DUF410: Protein of un 34.5 5.3E+02 0.012 26.5 20.2 27 516-542 143-169 (260)
401 PF11848 DUF3368: Domain of un 34.4 1.3E+02 0.0029 21.8 5.2 32 560-591 13-44 (48)
402 COG2178 Predicted RNA-binding 34.1 4.1E+02 0.0089 25.9 9.8 108 392-508 20-149 (204)
403 cd08819 CARD_MDA5_2 Caspase ac 33.7 2.8E+02 0.006 23.2 7.4 14 249-262 50-63 (88)
404 cd00280 TRFH Telomeric Repeat 33.6 2.4E+02 0.0052 27.3 8.0 21 557-577 119-139 (200)
405 PF11663 Toxin_YhaV: Toxin wit 33.5 40 0.00088 30.5 2.8 32 665-698 104-135 (140)
406 TIGR02710 CRISPR-associated pr 33.1 4.6E+02 0.0099 28.7 11.3 19 421-439 141-159 (380)
407 PRK15180 Vi polysaccharide bio 33.1 7.4E+02 0.016 27.8 24.1 123 207-335 299-421 (831)
408 KOG1308 Hsp70-interacting prot 33.1 28 0.00061 36.7 2.1 88 210-302 127-214 (377)
409 PF14669 Asp_Glu_race_2: Putat 32.6 4.8E+02 0.01 25.5 14.8 24 585-608 182-205 (233)
410 PF09670 Cas_Cas02710: CRISPR- 32.6 6.5E+02 0.014 27.6 12.7 53 385-438 141-197 (379)
411 PF08311 Mad3_BUB1_I: Mad3/BUB 32.5 3.5E+02 0.0076 24.3 8.9 44 215-260 81-124 (126)
412 KOG0403 Neoplastic transformat 31.9 7.5E+02 0.016 27.5 16.4 25 414-438 218-242 (645)
413 PF13762 MNE1: Mitochondrial s 31.9 4.2E+02 0.0091 24.6 10.7 50 444-493 78-128 (145)
414 PF10475 DUF2450: Protein of u 31.8 3.5E+02 0.0076 28.4 10.2 112 345-467 103-219 (291)
415 PRK10941 hypothetical protein; 31.8 4.8E+02 0.01 27.0 10.9 58 485-542 186-243 (269)
416 PF11848 DUF3368: Domain of un 31.7 1.6E+02 0.0034 21.4 5.3 26 318-343 15-40 (48)
417 PF07575 Nucleopor_Nup85: Nup8 31.5 2.5E+02 0.0054 32.8 9.8 164 377-556 374-537 (566)
418 KOG4507 Uncharacterized conser 30.5 3.4E+02 0.0074 31.1 9.8 72 310-383 647-718 (886)
419 PF14561 TPR_20: Tetratricopep 30.4 3.3E+02 0.0071 22.8 9.3 32 232-263 19-50 (90)
420 PF11663 Toxin_YhaV: Toxin wit 30.4 41 0.0009 30.4 2.4 31 247-279 107-137 (140)
421 PF14689 SPOB_a: Sensor_kinase 30.2 1.1E+02 0.0023 23.7 4.4 22 381-402 29-50 (62)
422 KOG2471 TPR repeat-containing 30.1 8.4E+02 0.018 27.5 14.1 273 318-595 30-380 (696)
423 KOG2062 26S proteasome regulat 29.6 1E+03 0.022 28.4 32.1 42 166-207 64-105 (929)
424 PRK10564 maltose regulon perip 29.6 1.1E+02 0.0025 31.9 5.8 28 309-336 261-288 (303)
425 cd08819 CARD_MDA5_2 Caspase ac 29.5 3E+02 0.0064 23.0 7.0 33 318-355 49-81 (88)
426 PF09477 Type_III_YscG: Bacter 29.5 3.9E+02 0.0084 23.4 9.4 52 557-614 48-99 (116)
427 KOG4077 Cytochrome c oxidase, 29.4 3E+02 0.0064 24.8 7.3 45 533-577 68-112 (149)
428 PF10366 Vps39_1: Vacuolar sor 29.3 2.8E+02 0.006 24.2 7.4 26 343-368 42-67 (108)
429 PF12862 Apc5: Anaphase-promot 29.3 2.1E+02 0.0046 24.0 6.6 22 241-262 47-68 (94)
430 COG0735 Fur Fe2+/Zn2+ uptake r 28.7 2.7E+02 0.0058 25.8 7.7 62 536-598 8-69 (145)
431 PF12862 Apc5: Anaphase-promot 28.4 2.7E+02 0.0059 23.4 7.1 19 523-541 50-68 (94)
432 PF13762 MNE1: Mitochondrial s 27.9 4.9E+02 0.011 24.1 10.9 48 375-422 79-127 (145)
433 KOG2297 Predicted translation 27.4 7.5E+02 0.016 26.1 20.0 69 423-500 268-341 (412)
434 PF14853 Fis1_TPR_C: Fis1 C-te 27.2 2.1E+02 0.0046 21.3 5.3 26 454-481 10-35 (53)
435 COG0790 FOG: TPR repeat, SEL1 26.9 7.2E+02 0.016 25.7 25.4 17 495-511 206-222 (292)
436 smart00386 HAT HAT (Half-A-TPR 26.6 1.3E+02 0.0028 18.6 3.9 13 213-225 3-15 (33)
437 KOG2659 LisH motif-containing 26.3 5.9E+02 0.013 25.5 9.8 20 242-261 71-90 (228)
438 PF14561 TPR_20: Tetratricopep 26.2 3.9E+02 0.0085 22.4 8.6 65 183-251 10-74 (90)
439 PRK11619 lytic murein transgly 26.1 1.2E+03 0.025 27.8 39.7 433 133-604 35-496 (644)
440 PF04910 Tcf25: Transcriptiona 26.1 8.8E+02 0.019 26.4 18.2 55 487-541 110-166 (360)
441 KOG1308 Hsp70-interacting prot 26.0 41 0.00089 35.5 1.8 95 173-273 126-220 (377)
442 KOG4521 Nuclear pore complex, 25.8 1.4E+03 0.031 28.8 14.9 23 341-363 1103-1125(1480)
443 COG5108 RPO41 Mitochondrial DN 25.3 3.9E+02 0.0086 31.1 9.2 75 380-457 33-115 (1117)
444 COG5159 RPN6 26S proteasome re 25.1 8E+02 0.017 25.6 19.7 94 415-508 130-234 (421)
445 KOG2168 Cullins [Cell cycle co 25.1 8.1E+02 0.018 29.6 12.1 17 457-473 719-735 (835)
446 PRK13342 recombination factor 24.9 9.7E+02 0.021 26.5 19.4 29 493-521 243-271 (413)
447 KOG4077 Cytochrome c oxidase, 24.4 4.1E+02 0.009 24.0 7.3 44 291-334 70-113 (149)
448 PF14853 Fis1_TPR_C: Fis1 C-te 24.2 2.6E+02 0.0056 20.9 5.3 26 202-227 6-31 (53)
449 PF11838 ERAP1_C: ERAP1-like C 23.8 8.6E+02 0.019 25.5 18.9 24 519-542 206-229 (324)
450 PRK10564 maltose regulon perip 23.7 1.4E+02 0.0031 31.2 5.2 35 338-372 254-289 (303)
451 KOG2582 COP9 signalosome, subu 23.7 9.6E+02 0.021 26.0 16.4 250 233-510 73-346 (422)
452 PF11846 DUF3366: Domain of un 23.5 3.2E+02 0.007 26.5 7.7 34 476-509 140-173 (193)
453 PF09454 Vps23_core: Vps23 cor 23.3 1.9E+02 0.0041 22.6 4.7 51 336-387 4-54 (65)
454 smart00777 Mad3_BUB1_I Mad3/BU 22.7 5.7E+02 0.012 23.0 8.3 42 532-573 81-123 (125)
455 PHA03100 ankyrin repeat protei 22.1 5.2E+02 0.011 29.1 10.3 233 290-538 48-304 (480)
456 KOG0890 Protein kinase of the 22.0 2.2E+03 0.048 29.7 36.3 62 375-439 1670-1731(2382)
457 PF11768 DUF3312: Protein of u 21.9 7.2E+02 0.016 28.5 10.5 60 201-262 412-471 (545)
458 PRK13341 recombination factor 21.7 1.5E+03 0.032 27.4 18.1 38 387-424 270-307 (725)
459 KOG2908 26S proteasome regulat 21.4 8.4E+02 0.018 26.1 10.1 78 450-527 80-169 (380)
460 COG5108 RPO41 Mitochondrial DN 20.9 5E+02 0.011 30.3 8.9 92 202-297 33-130 (1117)
461 PF09797 NatB_MDM20: N-acetylt 20.9 1.1E+03 0.023 25.6 23.8 279 307-608 3-310 (365)
462 COG4941 Predicted RNA polymera 20.7 1.1E+03 0.023 25.4 12.8 119 461-581 272-397 (415)
463 PRK14951 DNA polymerase III su 20.7 1.4E+03 0.031 26.9 13.3 106 392-522 186-292 (618)
464 COG0735 Fur Fe2+/Zn2+ uptake r 20.6 3.7E+02 0.0081 24.8 7.0 49 502-550 8-56 (145)
465 cd00280 TRFH Telomeric Repeat 20.4 8E+02 0.017 23.9 12.0 20 279-298 120-139 (200)
466 PF11768 DUF3312: Protein of u 20.3 9.5E+02 0.021 27.6 11.0 21 416-436 414-434 (545)
467 PF12968 DUF3856: Domain of Un 20.1 6.4E+02 0.014 22.6 10.9 61 479-539 54-125 (144)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.7e-72 Score=666.36 Aligned_cols=600 Identities=17% Similarity=0.261 Sum_probs=536.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 003353 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245 (827)
Q Consensus 166 ~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~ 245 (827)
.+...+.+.|+.++|+++|++|.+.+-..++...++.++..|.+.|.+++|..+|+.|. .|+..+|+.++.+|
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------NPTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHH
Confidence 34455556699999999999999987667888889999999999999999999999885 47899999999999
Q ss_pred HHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325 (827)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~ 325 (827)
++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG--CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 326 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 67899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 003353 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTY 483 (827)
Q Consensus 404 ~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 483 (827)
.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 003353 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562 (827)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 562 (827)
+++|.+|++.|++++|.++|++|.+.|+.|+. +|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999995 89999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC-------------------CHHHHHHHHHHHhhccCchhH
Q 003353 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR----CQ-------------------DEQNERHLMAILSATKHKAHA 619 (827)
Q Consensus 563 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~g-------------------~~~~a~~l~~~l~~~~~~~~~ 619 (827)
|++++|.++|++|.+.|+.||..+|++|+..|.+ ++ ..+.|..+|++|...+..++.
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 9999999999999999999999999999976432 22 236788899999998876664
Q ss_pred HH-hhhccCCccccchhHHHHHHHhhccccccccC-cchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhh
Q 003353 620 FL-CGLFTGPEQRKQPVLSFVREFFHGIDYELEEG-AARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQH 697 (827)
Q Consensus 620 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~ 697 (827)
.. ..++... ...+....+.++++.+. ..+. ....+||+||+++++. .++|..+++.|.+.|+.|+.. +++.
T Consensus 848 ~T~~~vL~cl--~~~~~~~~~~~m~~~m~--~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~-~~~~ 920 (1060)
T PLN03218 848 EVLSQVLGCL--QLPHDATLRNRLIENLG--ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS-FKKS 920 (1060)
T ss_pred HHHHHHHHHh--cccccHHHHHHHHHHhc--cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc-cccC
Confidence 32 2222111 22223445566665542 2222 2356799999998432 468999999999999999975 3333
Q ss_pred hhhhcccCccchHHHHHHHHHHHHHHHHHHHhCCCCCceee--------eecchh---------HHHHHHHHHhccCCCc
Q 003353 698 IAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIK--------LVTGPT---------LKIVIAQMLSSVESPF 760 (827)
Q Consensus 698 i~w~~~~~~~~~g~a~~~~~~~~~~~~~~m~~~g~~P~~~~--------~~tg~~---------~~~~~~~~l~~~~~pf 760 (827)
.|.+|+|.|+.|+|.+++..|+..+.++.......|.... +-|+.+ +..+|+.+|.+++.||
T Consensus 921 -~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~ 999 (1060)
T PLN03218 921 -PIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPY 999 (1060)
T ss_pred -ceEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 6999999999999999999999999877655446888776 344333 6788999999999999
Q ss_pred eec--cceEEecchHHHHhhhc
Q 003353 761 EVS--KVVLRAPGDSVMEWFKK 780 (827)
Q Consensus 761 ~~~--~~~~~~~g~~~~~w~~~ 780 (827)
..+ +..+...|.+++.||+-
T Consensus 1000 ~~~~~~g~~~~~~~~~~~wl~~ 1021 (1060)
T PLN03218 1000 QGSESHGKLRINGLSLRRWFQP 1021 (1060)
T ss_pred CCCCCCCeEEeccHHHHHHhcc
Confidence 984 45999999999999987
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.2e-70 Score=662.24 Aligned_cols=657 Identities=15% Similarity=0.178 Sum_probs=520.8
Q ss_pred CCCcchhhHHHHhhhcccccccccCCccccCCCCCccccccCcCCCCCCHHHHHHHHHHHHcCCCCccHHHHhhhCCCCC
Q 003353 83 GEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVP 162 (827)
Q Consensus 83 ~~~~~~w~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p 162 (827)
+++...++.++..+...|... ++...|+.+...+..++.. ....+.+.|...+....+..++..+.+.+..+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~-------~A~~l~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 119 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLE-------QALKLLESMQELRVPVDED-AYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHH-------HHHHHHHHHHhcCCCCChh-HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCC
Confidence 445566889999999999988 8888887776654322222 22233333333223333444555555555555
Q ss_pred CHHHH---HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---------
Q 003353 163 KMVHI---TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN--------- 230 (827)
Q Consensus 163 ~~~~~---~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~--------- 230 (827)
+.... ...+.+.|+.+.|.++|+.+.. ||..+|+.+|.+|++.|++++|+++|++|...|..+
T Consensus 120 ~~~~~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll 194 (857)
T PLN03077 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194 (857)
T ss_pred CchHHHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 54332 3333445555555555554432 445555555555555555555555555555544300
Q ss_pred -----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh
Q 003353 231 -----------------------GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287 (827)
Q Consensus 231 -----------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~ 287 (827)
..++..++|.|+.+|+++|++++|.++|++|.+ ||.++||++|.+|++.|+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECL 270 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHH
Confidence 145666778888999999999999999999975 78899999999999999999
Q ss_pred HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 367 (827)
+|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 003353 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST 447 (827)
Q Consensus 368 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 447 (827)
.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 351 ----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 351 ----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred ----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-hHHHHHHHHHH
Q 003353 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIK 526 (827)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~y~~ 526 (827)
||+||++|++.|++++|.++|++|.+ +|.++|+++|.+|++.|+.++|.++|++|.. +..|+. ++..++.+|++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 99999999999999999999999864 6888999999999999999999999999986 477774 88899999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606 (827)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l 606 (827)
.|.++.+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|+++ .||.++|++||.+|++.|+.++|..+
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886 67999999999999999999999999
Q ss_pred HHHHhhccCchhHHH-hhhccCCccccchhHHHHHHHhhccc--cccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 003353 607 MAILSATKHKAHAFL-CGLFTGPEQRKQPVLSFVREFFHGID--YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAY 683 (827)
Q Consensus 607 ~~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~ 683 (827)
|++|...+..++... ..++.+.. .....+++.++|+.|. ++..|+.. +|++|+++|++.|++++|.+++++|
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~--~~g~v~ea~~~f~~M~~~~gi~P~~~--~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACS--RSGMVTQGLEYFHSMEEKYSITPNLK--HYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHh--hcChHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 999988776555432 12221111 1234566777787774 45555544 5679999999999999999999887
Q ss_pred HCCCCCCceehhhhhhhhcccCccchHHHHHHHHHHHHHHHHHHHhCCCCCceeeeecchhHHHHHHHHHhccCCCceec
Q 003353 684 ENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVS 763 (827)
Q Consensus 684 ~~~~~p~~~~~~~~i~w~~~~~~~~~g~a~~~~~~~~~~~~~~m~~~g~~P~~~~~~tg~~~~~~~~~~l~~~~~pf~~~ 763 (827)
...||..+|++++..|...++...| ....+++++ ..|+. .+.+++++|+|...|.|.++.
T Consensus 652 --~~~pd~~~~~aLl~ac~~~~~~e~~----------e~~a~~l~~--l~p~~------~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 652 --PITPDPAVWGALLNACRIHRHVELG----------ELAAQHIFE--LDPNS------VGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred --CCCCCHHHHHHHHHHHHHcCChHHH----------HHHHHHHHh--hCCCC------cchHHHHHHHHHHCCChHHHH
Confidence 4679999999999754433333322 222234444 57876 445999999999999999998
Q ss_pred cc--------eEEecchHHHHhhhchhhHHHHhhc--CCchhHH
Q 003353 764 KV--------VLRAPGDSVMEWFKKPIVQQFLLNE--IPSRADI 797 (827)
Q Consensus 764 ~~--------~~~~~g~~~~~w~~~~~~~~~~~~~--~~~~~~~ 797 (827)
++ ..+.||+||+++.++ +|.|...| +|...+|
T Consensus 712 ~vr~~M~~~g~~k~~g~s~ie~~~~--~~~f~~~d~~h~~~~~i 753 (857)
T PLN03077 712 RVRKTMRENGLTVDPGCSWVEVKGK--VHAFLTDDESHPQIKEI 753 (857)
T ss_pred HHHHHHHHcCCCCCCCccEEEECCE--EEEEecCCCCCcchHHH
Confidence 87 568999999999999 99999998 6766555
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-63 Score=593.69 Aligned_cols=524 Identities=17% Similarity=0.211 Sum_probs=477.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
.++...|..++..|++.|++++|+++|++|.+.+. .+++...++.++..|.+.|.+++|..+|+.|.. ||..+|
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv--v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL--LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 46778899999999999999999999999999885 356788889999999999999999999999986 899999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
|.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI--AGFRPNFGLFTMIIESHAKSGKLDIAMS 431 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~li~~~~~~g~~~~A~~ 431 (827)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 6799999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003353 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511 (827)
Q Consensus 432 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 511 (827)
+|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchH-hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003353 512 SVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590 (827)
Q Consensus 512 ~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 590 (827)
.|+. +|+.+|.+|+++|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||++|
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9995 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCC----------------------ccccchhHHHHHHHhhccc-
Q 003353 591 LAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGP----------------------EQRKQPVLSFVREFFHGID- 647 (827)
Q Consensus 591 l~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~- 647 (827)
+.+|.+.|+.++|..+++.|...+..++..++..+.+. ......+...+..+|+.|.
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999988877665443222111 0011223345666666653
Q ss_pred cccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhhhhhhcccCccchHHHHHHHHHHHHHHHHHH
Q 003353 648 YELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRM 727 (827)
Q Consensus 648 ~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~i~w~~~~~~~~~g~a~~~~~~~~~~~~~~m 727 (827)
.+..|+ ..+|++++..+++.|..+.+..+++.+...+..|+..+|+++|+.++. ...++..++++|
T Consensus 841 ~Gi~Pd--~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~------------~~~~A~~l~~em 906 (1060)
T PLN03218 841 AGTLPT--MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE------------YDPRAFSLLEEA 906 (1060)
T ss_pred CCCCCC--HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc------------ChHHHHHHHHHH
Confidence 344444 456789999999999999999999888777778899999999974321 123577888999
Q ss_pred HhCCCCCcee
Q 003353 728 LYYGVVPRRI 737 (827)
Q Consensus 728 ~~~g~~P~~~ 737 (827)
...|+.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 9999999985
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-63 Score=603.22 Aligned_cols=659 Identities=17% Similarity=0.162 Sum_probs=541.3
Q ss_pred CCCcchhhHHHHhhhcccccccccCCccccCCCCCccccccCcCCCCCCHHHHHHHHHHHHcCCCCccHHHHhhhCCCCC
Q 003353 83 GEKCNEWTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVP 162 (827)
Q Consensus 83 ~~~~~~w~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p 162 (827)
.|+...|+.++..+.+.|.+. +|+..|+++...+-.|+.. +...+.+.|........+..++..+.+.|+.|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~-------~A~~~f~~M~~~g~~Pd~~-t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~ 220 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFD-------EALCLYHRMLWAGVRPDVY-TFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHH-------HHHHHHHHHHHcCCCCChh-HHHHHHHHhCCccchhhHHHHHHHHHHcCCCc
Confidence 467888999999999999998 9999999888765433333 55556666665556666778999999999999
Q ss_pred CHHHH---HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHH
Q 003353 163 KMVHI---TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYN 239 (827)
Q Consensus 163 ~~~~~---~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~ 239 (827)
+.... +..+.+.|+.+.|.++|+.+.. ||..+|+++|.+|++.|++++|+++|++|.+.+. .||..+|+
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~---~Pd~~ty~ 292 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSV---DPDLMTIT 292 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCChhHHH
Confidence 87664 5556678999999999998753 6788999999999999999999999999999997 99999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcC
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g 319 (827)
.++.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNG 368 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999964 78999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003353 320 RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWD 399 (827)
Q Consensus 320 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 399 (827)
++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+||+||++|++.|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 003353 400 EMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479 (827)
Q Consensus 400 ~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 479 (827)
+|.+ +|..+|+++|.+|++.|+.++|.++|++|.+ ++.||..||++++.+|++.|..+++.+++..|.+.|+.+|
T Consensus 449 ~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 449 NIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred hCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 9974 6889999999999999999999999999986 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003353 480 LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFES 558 (827)
Q Consensus 480 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 558 (827)
..++++||.+|++.|++++|.++|+++ .++ .+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 999999999999999999999999987 345 58999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCC-ccccchhH
Q 003353 559 CMKNALYESAKPLLETYV-ESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGP-EQRKQPVL 636 (827)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~ 636 (827)
|++.|++++|.++|++|. +.|+.||..+|++++++|.+.|+.++|.++++.|. ..++...+ ..++.+. ..+..+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd~~~~-~aLl~ac~~~~~~e-- 674 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPDPAVW-GALLNACRIHRHVE-- 674 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCCHHHH-HHHHHHHHHcCChH--
Confidence 999999999999999999 68999999999999999999999999999999985 23332221 1111111 111111
Q ss_pred HHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhhhhhhcccCccchHHH----
Q 003353 637 SFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAA---- 712 (827)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~i~w~~~~~~~~~g~a---- 712 (827)
.++...+.+- +++|+. ...|..|.++|.+.|++++|.++++.|.++|+.++....-. .....+|.+..|.-
T Consensus 675 -~~e~~a~~l~-~l~p~~-~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i--e~~~~~~~f~~~d~~h~~ 749 (857)
T PLN03077 675 -LGELAAQHIF-ELDPNS-VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV--EVKGKVHAFLTDDESHPQ 749 (857)
T ss_pred -HHHHHHHHHH-hhCCCC-cchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE--EECCEEEEEecCCCCCcc
Confidence 2222222211 234432 23466899999999999999999999999999876643100 00112222222211
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceeeee-----------cchhHHHHHHHHH--hccCCCceeccceEEec-chHHHHhh
Q 003353 713 LIAVMHTLHRFRKRMLYYGVVPRRIKLV-----------TGPTLKIVIAQML--SSVESPFEVSKVVLRAP-GDSVMEWF 778 (827)
Q Consensus 713 ~~~~~~~~~~~~~~m~~~g~~P~~~~~~-----------tg~~~~~~~~~~l--~~~~~pf~~~~~~~~~~-g~~~~~w~ 778 (827)
.......+.++.++|...|..||.-... .+-.-+.+|+--| ..-|+|.+|.|-..++. =|+++...
T Consensus 750 ~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~ 829 (857)
T PLN03077 750 IKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFI 829 (857)
T ss_pred hHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHH
Confidence 1123456778889999999999854321 1112233444333 44667888877644443 23444444
Q ss_pred hc
Q 003353 779 KK 780 (827)
Q Consensus 779 ~~ 780 (827)
-+
T Consensus 830 s~ 831 (857)
T PLN03077 830 SK 831 (857)
T ss_pred HH
Confidence 33
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-61 Score=570.81 Aligned_cols=557 Identities=17% Similarity=0.188 Sum_probs=485.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 003353 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244 (827)
Q Consensus 165 ~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~ 244 (827)
...+..+...+++++|+++|+++....++.|+..+|+.++.+|++.++++.|.+++..|.+.|. .++..+||.++.+
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~---~~~~~~~n~Li~~ 167 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF---EPDQYMMNRVLLM 167 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CcchHHHHHHHHH
Confidence 3456667788999999999999998776789999999999999999999999999999999997 8999999999999
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHH
Q 003353 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 324 (827)
|+++|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999999985 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 325 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
.+++..+.+.|+.+|..+|++||++|+++|++++|.++|++|. .+|+++||+||.+|++.|+.++|+++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999997 679999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 003353 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484 (827)
Q Consensus 405 g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 484 (827)
|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .||..+|+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 48999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-hHHHHHHHHHHcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHc
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGS-SGIRTNNFIVRQLFESCMKN 562 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~ 562 (827)
++|.+|++.|+.++|.++|++|.+.|+.|+. +|+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 9999999999999999999999999999995 899999999999999999999999986 69999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHH
Q 003353 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREF 642 (827)
Q Consensus 563 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 642 (827)
|++++|.+++++| +.+||..+|++|+.+|...|+.+.+..+++.+....
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~---------------------------- 524 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG---------------------------- 524 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC----------------------------
Confidence 9999999999876 689999999999999999999999988776653211
Q ss_pred hhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCceehhhhhhhhcccCccchHHH----HHHHH
Q 003353 643 FHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF-PKAIVFDQHIAWSLDVRNLSVGAA----LIAVM 717 (827)
Q Consensus 643 ~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~-p~~~~~~~~i~w~~~~~~~~~g~a----~~~~~ 717 (827)
|. ....|+.|+++|++.|++++|.++++.|.++|+. ++..+|..+ ...+|.+..|.. .....
T Consensus 525 ---------p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~---~~~~~~f~~~d~~h~~~~~i~ 591 (697)
T PLN03081 525 ---------PE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV---KKQDHSFFSGDRLHPQSREIY 591 (697)
T ss_pred ---------CC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEE---CCeEEEEccCCCCCccHHHHH
Confidence 11 1234679999999999999999999999999986 333343221 112232222211 12235
Q ss_pred HHHHHHHHHHHhCCCCCceeeee---cc---------hhHHHHHHHHH--hccCCCceeccceEEec-chHHHHhhhc
Q 003353 718 HTLHRFRKRMLYYGVVPRRIKLV---TG---------PTLKIVIAQML--SSVESPFEVSKVVLRAP-GDSVMEWFKK 780 (827)
Q Consensus 718 ~~~~~~~~~m~~~g~~P~~~~~~---tg---------~~~~~~~~~~l--~~~~~pf~~~~~~~~~~-g~~~~~w~~~ 780 (827)
..+.++.++|...|..||.-.+. .. -.-+-+|+--| ..-|+|..|.|-..++- -|+.+...-+
T Consensus 592 ~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~ 669 (697)
T PLN03081 592 QKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIAL 669 (697)
T ss_pred HHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhh
Confidence 67888899999999999854331 11 11233333333 34567877777644433 3455554444
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.4e-60 Score=559.26 Aligned_cols=474 Identities=15% Similarity=0.179 Sum_probs=366.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
..+..+|+.+|.++.+.|++++|+++|+.|...+. ..++..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~--~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCP--FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 45566888888888888888888888888876541 2578888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
|.|+.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..||+.++.+|++.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 8888888888888888888888864 688888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 433 (827)
|+.+.+.+++..+.+.|+.||..+||+||++|++.|++++|.++|++|.+ +|.++||++|.+|++.|+.++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888753 57788888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 434 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
++|.+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+ +
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 888888888888888888888888888888888888888888888888888888888888888888888887754 3
Q ss_pred h-HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 003353 514 D-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE-SAAKVDLVLYTSVL 591 (827)
Q Consensus 514 ~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll 591 (827)
+ .+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.||..+|++++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 3 478888888888888888888888888888888888888888888888888888888888865 57788888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCC
Q 003353 592 AHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQ 671 (827)
Q Consensus 592 ~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~ 671 (827)
++|++.|+.++|.++++.+. ..| +..+|++|+.+|.+.|+
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~--------------------------------------~~p--~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAP--------------------------------------FKP--TVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCC--------------------------------------CCC--CHHHHHHHHHHHHHcCC
Confidence 88888888887776654321 111 23567788888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCceehhhhhhhhcccCccchHHHHHHHHHHHHHHHHHHHhCCC
Q 003353 672 INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGV 732 (827)
Q Consensus 672 ~~~A~~v~~~~~~~~~~p~~~~~~~~i~w~~~~~~~~~g~a~~~~~~~~~~~~~~m~~~g~ 732 (827)
++.|..+++++.+..+ .+..+|..++. +++..|....+.++++.|...|+
T Consensus 510 ~~~a~~~~~~l~~~~p-~~~~~y~~L~~----------~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 510 LELGRLAAEKLYGMGP-EKLNNYVVLLN----------LYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred cHHHHHHHHHHhCCCC-CCCcchHHHHH----------HHHhCCCHHHHHHHHHHHHHcCC
Confidence 8888777777654332 12335555543 44445555566666666666554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9e-29 Score=305.41 Aligned_cols=506 Identities=15% Similarity=0.090 Sum_probs=386.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+.++...+++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+.. +........++..|.+
T Consensus 370 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 370 GEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD----PELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC----CcchhhHHHHHHHHHh
Confidence 445556677777777777766653 3455566666677777777777777777776654 4445566667777777
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.|++++|..+++.+....+ .+..+|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.
T Consensus 444 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred cCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777788777777776443 367788888888888888888888888887653 23556777788888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 407 (827)
++++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|.+.|++++|.++++++.+.. .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 88888765 5567788888888888899999999988887765 4466778888888999999999999999888754 3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 003353 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTAL 486 (827)
Q Consensus 408 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~l 486 (827)
.+..+|..+..+|.+.|++++|...|+++.+... .+...+..+...|.+.|++++|...|+++.+. .| +..++..+
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 675 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGL 675 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 4678888899999999999999999999887543 36777888889999999999999999998874 34 46788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566 (827)
Q Consensus 487 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 566 (827)
...+...|++++|.++++.+.+..+.....+..+...|.+.|++++|.+.|+++.+.+ |+..++..+..++.+.|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 8899999999999999999988876666678888889999999999999999998764 44567777888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCcccc-chhHHHHHHHhhc
Q 003353 567 SAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRK-QPVLSFVREFFHG 645 (827)
Q Consensus 567 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 645 (827)
+|.+.++++.+..+. +...+..+...|.+.|+.++|...++.+....+.....+..+.......+ ..+.....+.+.
T Consensus 754 ~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~- 831 (899)
T TIGR02917 754 EAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALK- 831 (899)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHh-
Confidence 999999999987655 78899999999999999999999999987776654444332211111111 223333333332
Q ss_pred cccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhh
Q 003353 646 IDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQH 697 (827)
Q Consensus 646 ~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~ 697 (827)
..|+ ...+++.++.+|.+.|+.++|...++++++.++. +..++..+
T Consensus 832 ----~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l 877 (899)
T TIGR02917 832 ----LAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHL 877 (899)
T ss_pred ----hCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHH
Confidence 1222 2345679999999999999999999999998875 44444443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.2e-28 Score=300.51 Aligned_cols=509 Identities=11% Similarity=0.058 Sum_probs=370.2
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+.++...++++.|...|+.+.+.. +.+...+..+...+.+.|++++|...++.+.... +.+..++..+...+.+
T Consensus 302 ~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 375 (899)
T TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD----PDDPAALSLLGEAYLA 375 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHH
Confidence 444556677777777777776653 3455666677777777888888888887777665 6667777788888888
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.|++++|.++|+++.+..+. +...|..+...+...|++++|.+.|+++.+.... +......++..+.+.|++++|.++
T Consensus 376 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred CCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHH
Confidence 88888888888887765543 6667777777777888888888888877765322 334555667777888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 407 (827)
++.+.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+..
T Consensus 454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 531 (899)
T TIGR02917 454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531 (899)
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC
Confidence 88887654 5667788888888888888888888888887654 345667777888888888888888888888876533
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003353 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487 (827)
Q Consensus 408 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 487 (827)
+..++..+...+.+.|+.++|...++++.+.+. .+...+..++..|.+.|++++|..+++++.+. ...+..+|..+.
T Consensus 532 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 608 (899)
T TIGR02917 532 -NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLG 608 (899)
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHH
Confidence 677788888888888888888888888876543 35667778888888888888888888888764 234567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYES 567 (827)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 567 (827)
.++...|++++|.+.++++.+..+.....+..+...|.+.|++++|..+++++.+.. +.+...+..+...+...|++++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 888888899999988888887765555577788888888899999998888888643 2246677778888888888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHH-hhhccCCccccchhHHHHHHHhhcc
Q 003353 568 AKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFL-CGLFTGPEQRKQPVLSFVREFFHGI 646 (827)
Q Consensus 568 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~ 646 (827)
|..+++.+.+.++. +...+..+...+.+.|++++|...++.+....+...... .+......+..+.+......++..
T Consensus 688 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~- 765 (899)
T TIGR02917 688 AKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT- 765 (899)
T ss_pred HHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 98888888877644 667778888888888999999888888766655543221 111111111222222222222221
Q ss_pred ccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhhh
Q 003353 647 DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHI 698 (827)
Q Consensus 647 ~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~i 698 (827)
.|+ +...++.+++.|.+.|+.++|.+.++++.+..+ ++..+++.+.
T Consensus 766 ----~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~ 811 (899)
T TIGR02917 766 ----HPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLA 811 (899)
T ss_pred ----CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 121 234567888999999999999999999888765 3444555544
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.5e-19 Score=225.89 Aligned_cols=495 Identities=11% Similarity=0.050 Sum_probs=311.6
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~-~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
..++...+++++|++.|+.+.... +|+.. ............|+.++|++.++++.+.. |.+..++..+...+.
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~----P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY----PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 335667899999999999888764 34432 11122222234689999999999999887 778888999999999
Q ss_pred HcCCHHHHHHHHHHhHhCCCC------------------CC-HHHHH---------------------------------
Q 003353 247 KADKLEMSYCCFKKVLDSDCK------------------ID-TQSYN--------------------------------- 274 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~------------------p~-~~~~n--------------------------------- 274 (827)
..|+.++|+..++++.+.... ++ ...+.
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 999999999999887653210 00 00000
Q ss_pred -HHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHH---------
Q 003353 275 -VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP-SFNIF--------- 343 (827)
Q Consensus 275 -~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~--------- 343 (827)
.....+...|++++|+..|++.++.. +-+..++..+..++.+.|++++|...|++..+..... ....|
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 11234455677777777777776642 2256677777777777777777777777777654211 11111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 344 ---ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420 (827)
Q Consensus 344 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 420 (827)
......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...|
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 122345567777777777777777654 335556666777777777777777777777765322 344555555544
Q ss_pred HhcCChhHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 003353 421 AKSGKLDIAMSIFTDMERAGFL--------PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLA 491 (827)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~ 491 (827)
. .++.++|...++.+...... .....+..+...+...|++++|++.|++.++ ..|+ ...+..+...|.
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--LDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3 34455555555443221000 0012234455566677788888888877776 3454 445666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCchHhHHHHHH--------------------------------------------HHHHc
Q 003353 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLM--------------------------------------------VYIKD 527 (827)
Q Consensus 492 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~--------------------------------------------~y~~~ 527 (827)
+.|++++|...++++++..+.....+..+.. .+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 7888888888888777654433323332222 34445
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 528 GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
|+.++|.++++. ...+...+..+...+.+.|++++|++.|++.++..+. +...+..+...|...|+.++|...+
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555441 1233445566777888999999999999999987665 7888999999999999999999999
Q ss_pred HHHhhccCchhHHHh--hhccCCccccchhHHHHHHHhhccccccccCc----chhhHHHHHHHHHHcCChhHHHHHHHH
Q 003353 608 AILSATKHKAHAFLC--GLFTGPEQRKQPVLSFVREFFHGIDYELEEGA----ARYFVNVLLNYLVLMGQINRARCVWKV 681 (827)
Q Consensus 608 ~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~n~Li~~l~k~G~~~~A~~v~~~ 681 (827)
+.+....+....... +........ ...+...++.+....+... ...++..+..++.+.|+.++|...|++
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~----~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGD----TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCC----HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 987766554333221 211111122 2344444444321111111 123455668899999999999999999
Q ss_pred HHH
Q 003353 682 AYE 684 (827)
Q Consensus 682 ~~~ 684 (827)
++.
T Consensus 737 Al~ 739 (1157)
T PRK11447 737 AMV 739 (1157)
T ss_pred HHh
Confidence 975
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=8.6e-19 Score=219.05 Aligned_cols=538 Identities=11% Similarity=0.027 Sum_probs=331.5
Q ss_pred HHHHHHHHHcCCCCccHHHHhhhC-CCCCCHHH----HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHH---------
Q 003353 135 VAKIVEVVNRWKWGPELETQLDKL-QFVPKMVH----ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECY--------- 200 (827)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~l~~~-~~~p~~~~----~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~--------- 200 (827)
+..-.++-...+..+.+...+.++ .+.|+... ...++...|+.++|.+.++.+.+.. +.+....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 333334433334344455555444 45554433 2455567899999999999998875 3444433
Q ss_pred -------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHH
Q 003353 201 -------VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272 (827)
Q Consensus 201 -------~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 272 (827)
..+...+.+.|++++|.+.|+.+.+.. +++... ...........|+.++|++.++++.+..+. +...
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~----p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~ 183 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA----PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGL 183 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC----CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHH
Confidence 223446888999999999999998775 555432 111222223458999999999999987655 7778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCc------------------cCCH-HHHHH-----------------------
Q 003353 273 YNVLMTLFLNKGLPYKAFEIYESMEKGEC------------------SLDG-STYEL----------------------- 310 (827)
Q Consensus 273 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~------------------~pd~-~t~~~----------------------- 310 (827)
+..+...+...|+.++|++.++++.+... .++. ..+..
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 88999999999999999999999865421 0110 01110
Q ss_pred -----------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 003353 311 -----------MIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP-SAPMY 378 (827)
Q Consensus 311 -----------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~ 378 (827)
....+...|++++|...|++..+.. +.+..++..+..+|.+.|++++|+..|++..+..... ....|
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 0123445677777777777776654 4456667777777777777777777777766543211 11111
Q ss_pred H------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 003353 379 V------------SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446 (827)
Q Consensus 379 ~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 446 (827)
. .....+.+.|++++|++.|+++.+.... +...+..+...+...|++++|++.|+++.+.... +..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH
Confidence 1 1233455677777777777777765432 4555666667777777777777777777664322 344
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLR--------PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 518 (827)
.+..+...|. .++.++|..+++.+....-. .....+..+...+...|++++|++.++++++..+.....+.
T Consensus 421 a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~ 499 (1157)
T PRK11447 421 AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499 (1157)
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5555555553 34567777666554321000 00123344556677899999999999999998766556778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------------------
Q 003353 519 DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES-------------------- 578 (827)
Q Consensus 519 ~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------------------- 578 (827)
.+...|.+.|++++|...++++.+.... +...+..+...+...|+.++|+..++++...
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 8999999999999999999998864321 2222222222233444444444444332110
Q ss_pred -------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHH
Q 003353 579 -------------------AAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFV 639 (827)
Q Consensus 579 -------------------g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 639 (827)
....+...+..+...+.+.|+.++|...++......|.......++....... .....+
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~--g~~~eA 656 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ--GDLAAA 656 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 02234556677888888999999999998887776665544433222111111 112334
Q ss_pred HHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 003353 640 REFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF 688 (827)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~ 688 (827)
...++.+. ...|+ .......+..++.+.|+.++|.++++++.+..+.
T Consensus 657 ~~~l~~ll-~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 657 RAQLAKLP-ATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHh-ccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 44444332 22222 1234457888999999999999999999876543
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.4e-20 Score=199.10 Aligned_cols=439 Identities=14% Similarity=0.113 Sum_probs=327.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
+..-+.+-||+++|.+....+-+++ +.+....-.+-.++.+..+++...+--....+.. +.-..+|..+...+-
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~----~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN----PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc----chHHHHHHHHHHHHH
Confidence 4555566788888888888777665 2334444455566677777776666555555554 666778888888888
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHH-HHHHHHHcCCHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL-MIPSLAKSGRLDAAI 325 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-li~~~~~~g~~~~A~ 325 (827)
..|++++|+..++.+.+..++ .+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+ +.......|++++|.
T Consensus 128 erg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 888888888888888876654 677888888888888888888888888877 3466554433 344445578888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 326 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 405 (827)
..+.++++.. +--.+.|+.|...+-..|+...|+..|++..+.. +.-...|-.|...|...+.+++|+..+.+....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 8888887764 2334678888888888888888888888888753 223457888888888888888888888877664
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHH
Q 003353 406 FRPN-FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTY 483 (827)
Q Consensus 406 ~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~ 483 (827)
.|+ .+.+..+...|...|.+|.|+..|++.++.... =...|+.|..++-..|++.+|...|++.+. +.|+ ..+.
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam 357 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAM 357 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHH
Confidence 333 556666777788888888888888888875322 356788888888888888888888888887 4555 4577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHc
Q 003353 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKN 562 (827)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 562 (827)
+.|...+...|.+++|..+|....+..+.-....+.|...|-++|++++|+..+++.++ +.|+ ...++.+...|-..
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 88888888888888888888888876555556788888888888888888888888874 6676 44777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhh
Q 003353 563 ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGL 624 (827)
Q Consensus 563 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l 624 (827)
|+.+.|++.+.+.+..++. =....+.|...|--.|+..+|..-++.....+|+..+..|.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred hhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 8888888888888775444 344677788888888888888888887777777666555544
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.6e-19 Score=191.12 Aligned_cols=408 Identities=17% Similarity=0.164 Sum_probs=337.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
+..++.+..+.+.....-..+.+.. +.-.++|..+.+.+-..|++++|+.+++.+++.. +..+.+|..+..++.
T Consensus 88 l~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~----p~fida~inla~al~ 161 (966)
T KOG4626|consen 88 LSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELK----PKFIDAYINLAAALV 161 (966)
T ss_pred ehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC----chhhHHHhhHHHHHH
Confidence 4445555666666555555555554 4567899999999999999999999999999987 888999999999999
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHhHhCCccCC-HHHHHHHHHHHHHcCCHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSY-NVLMTLFLNKGLPYKAFEIYESMEKGECSLD-GSTYELMIPSLAKSGRLDAA 324 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~-n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A 324 (827)
..|+.+.|.+.|.+..+.. |+.... +.+...+...|+.++|...|.+.++. .|. .+.|+.|...+-.+|++..|
T Consensus 162 ~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~a 237 (966)
T KOG4626|consen 162 TQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLA 237 (966)
T ss_pred hcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHH
Confidence 9999999999999998754 554443 44555666689999999999998875 333 45788999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 325 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
++-|+++.+.+ +.-...|-.|...|...+.++.|...|.+..... +...+.+..|...|...|..|-|+..+++..+.
T Consensus 238 iq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 238 IQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred HHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 99999999865 3335789999999999999999999999988753 335678888999999999999999999999885
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-HH
Q 003353 405 GFRPN-FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL-ST 482 (827)
Q Consensus 405 g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t 482 (827)
.|+ ...|+.|..++-..|++.+|.+.|+........ ...+.+.|...|...|.+++|..+|....+ +.|.. ..
T Consensus 316 --~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa 390 (966)
T KOG4626|consen 316 --QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAA 390 (966)
T ss_pred --CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhh
Confidence 444 578999999999999999999999999876432 566788899999999999999999999988 66764 47
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHH
Q 003353 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMK 561 (827)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~ 561 (827)
.+.|...|-+.|++++|...++++++..+.-...++.+...|-..|+.+.|++.+.+... +.|. ....+.|...|..
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKD 468 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhc
Confidence 889999999999999999999999986554446899999999999999999999999985 3454 4577888889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003353 562 NALYESAKPLLETYVESAAKVDLVLYTSVLAHL 594 (827)
Q Consensus 562 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 594 (827)
.|++.+|+..+++.++..+.. ...|..++.++
T Consensus 469 sGni~~AI~sY~~aLklkPDf-pdA~cNllh~l 500 (966)
T KOG4626|consen 469 SGNIPEAIQSYRTALKLKPDF-PDAYCNLLHCL 500 (966)
T ss_pred cCCcHHHHHHHHHHHccCCCC-chhhhHHHHHH
Confidence 999999999999998855442 22444444443
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.5e-19 Score=198.13 Aligned_cols=301 Identities=11% Similarity=0.085 Sum_probs=205.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC---HHHHHHHHHHH
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID---TQSYNVLMTLF 280 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~n~li~~~ 280 (827)
...+...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|..+++.+.+.+..++ ...+..+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 344566778888888888888775 66677788888888888888888888887776432221 24567777778
Q ss_pred HHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCH
Q 003353 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS----FNIFASLVDSMGKAGRL 356 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~ 356 (827)
.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 88888888888888877642 33566777788888888888888888888776542221 12345566667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 357 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|.+.++++
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777653 23455666777777777777777777777776533222455667777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCc
Q 003353 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK---RKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 437 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~ 513 (827)
.+.. |+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.+++..+++++.+.++.+
T Consensus 276 ~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 276 LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 6643 4445556677777777777777777777766 35777777766665553 346667777777776655544
Q ss_pred h
Q 003353 514 D 514 (827)
Q Consensus 514 ~ 514 (827)
+
T Consensus 352 ~ 352 (389)
T PRK11788 352 K 352 (389)
T ss_pred C
Confidence 4
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.3e-19 Score=199.59 Aligned_cols=307 Identities=15% Similarity=0.155 Sum_probs=257.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
.+......+++++|+..|+.+.+.+ +.+..++..+...+.+.|++++|..+++.+......+......++..++..|.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3555567799999999999999975 45677899999999999999999999999987542000112357889999999
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCH----HHHHHHHHHHHHcCCHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG----STYELMIPSLAKSGRLD 322 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~li~~~~~~g~~~ 322 (827)
+.|++++|..+|+++.+..+ .+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999997643 47889999999999999999999999999886543322 24566778889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 323 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
+|.+.++++.+.. +.+...+..+...|.+.|++++|.+.++++.+.+......+++.++.+|.+.|++++|.+.++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999875 455678888999999999999999999999976433234678899999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHHCCCCCC
Q 003353 403 IAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS---SGQVDSAMKLYNSMTSAGLRPG 479 (827)
Q Consensus 403 ~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd 479 (827)
+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.++++|.++++.|+
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 864 56667788999999999999999999998875 5899999998888775 5689999999999999877777
Q ss_pred HH
Q 003353 480 LS 481 (827)
Q Consensus 480 ~~ 481 (827)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 65
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=7.4e-16 Score=184.47 Aligned_cols=524 Identities=10% Similarity=0.004 Sum_probs=316.3
Q ss_pred HHHHHHHHHHHcCCCCccHHHHhhhCCCCCCHHH----HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 003353 133 SAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH----ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208 (827)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p~~~~----~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~ 208 (827)
..+.++.......++..++...-..+...|+... +...+...|+.++|+..++.+.+.+ +-|...+..+ ..+
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L-a~i- 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSL-AAI- 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH-HHh-
Confidence 3344555555555555566666666666666543 3455556788888888888877764 2333333333 222
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH-HHH
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY--------LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL-MTL 279 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l-i~~ 279 (827)
+++++|..+++++.... |.+..++..+... |.+.+...+++ + .....+.|+..+.... ...
T Consensus 122 --~~~~kA~~~ye~l~~~~----P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQ----KACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQR 191 (987)
T ss_pred --ccChhHHHHHHHHHHhC----CCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHH
Confidence 77788888888888776 6667777666665 66554444444 3 3333333344433333 778
Q ss_pred HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK-SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
|.+.|++++|++++.++.+.+.. +..-...|..+|.. .++ +++..+++. .++.+...+..+.+.|.+.|+.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888877533 44446666667776 356 666666443 233566778888888888888888
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHH------------------------------HHHHHHcCCHHHHHHH----------
Q 003353 359 SMKVYMEMQGCGHR-PSAPMYVSL------------------------------IESYAKAGKLDTALRL---------- 397 (827)
Q Consensus 359 A~~~~~~m~~~g~~-p~~~~~~~l------------------------------i~~~~~~g~~~~A~~l---------- 397 (827)
|.++++++...-.. |...+|--+ +..+.+.++++-++++
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEML 345 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHH
Confidence 88888877643222 332222111 2222333333333222
Q ss_pred -----------------------------------------------------HHHHHHc-C-CCCCHHHHHHHHHHHHh
Q 003353 398 -----------------------------------------------------WDEMRIA-G-FRPNFGLFTMIIESHAK 422 (827)
Q Consensus 398 -----------------------------------------------------~~~m~~~-g-~~pd~~t~~~li~~~~~ 422 (827)
|+..... + -.++....+-++..|.+
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 2222110 0 01111222233444444
Q ss_pred cCC---hhHHHHH----------------------HHHHHH-cCC-CC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 423 SGK---LDIAMSI----------------------FTDMER-AGF-LP--TPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 423 ~g~---~~~A~~~----------------------~~~m~~-~g~-~p--~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
.+. ..++..+ ++.... .+. ++ +...|..+..++.. ++.++|...+.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 333 1111111 111110 011 12 45556666666655 677788887777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 003353 474 AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVR 553 (827)
Q Consensus 474 ~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 553 (827)
..|+......+...+...|++++|...++++...... +..+..+...+.+.|+.++|...+++..+.+. .+...+.
T Consensus 505 --~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~ 580 (987)
T PRK09782 505 --RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYW 580 (987)
T ss_pred --hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHH
Confidence 3476555444455556899999999999988665333 34566777788899999999999999987652 2233333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhc--cCCccc
Q 003353 554 QLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLF--TGPEQR 631 (827)
Q Consensus 554 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~--~~~~~~ 631 (827)
.+...+...|++++|+..+++.++..+ +...+..+..++.+.|+.++|...++......|........+. ......
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 333445566999999999999987654 5778899999999999999999999998887776665543222 111122
Q ss_pred cchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 003353 632 KQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFP 689 (827)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p 689 (827)
.+ .+...++... ...|+. ...+..|..+|.+.|++++|...++++++..+..
T Consensus 659 ~e----eAi~~l~~AL-~l~P~~-~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 659 IA----QSREMLERAH-KGLPDD-PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HH----HHHHHHHHHH-HhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 22 3333333221 223322 3456799999999999999999999999877543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.5e-17 Score=193.43 Aligned_cols=399 Identities=13% Similarity=0.012 Sum_probs=299.5
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+...++++.|+..|+.+... .|+...|..+..+|.+.|++++|++.++..++.. +.+..+|..+..+|..
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD----PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 56677889999999999999985 4678899999999999999999999999999887 8889999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC---------------------------C
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG---------------------------E 300 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~---------------------------g 300 (827)
.|++++|+.-|......+...+... ..++..+.......++...++.-... .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999998877654432222221 11111111100011111111110000 0
Q ss_pred ccCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003353 301 CSLDG-STYELMIPS---LAKSGRLDAAIKLFQEMKERN-F-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374 (827)
Q Consensus 301 ~~pd~-~t~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 374 (827)
..++. ..+..+... ....+++++|.+.|+++.+.+ . +.....|+.+...+...|++++|+..+++..+.. +.+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00000 000011000 122468999999999999865 2 3345678888999999999999999999998764 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003353 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454 (827)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 454 (827)
...|..+...+...|++++|+..|++..+... .+..+|..+...+...|++++|...|++..+.... +...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHH
Confidence 66888999999999999999999999988643 35788999999999999999999999999986432 57778889999
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-------hHHHHHHHHHH
Q 003353 455 HASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-------SASDVLMVYIK 526 (827)
Q Consensus 455 ~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-------~~~~li~~y~~ 526 (827)
+.+.|++++|+..|++.++. .|+ ...+..+...+...|++++|++.|++.++.....+. .+...+..|..
T Consensus 443 ~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999873 454 678888999999999999999999999987654321 12222334455
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003353 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAA 580 (827)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 580 (827)
.|++++|.+++++..+.+. .+...+..+...+.+.|++++|++.|++..+...
T Consensus 521 ~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 7999999999999987642 2344678889999999999999999999987643
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=9.7e-17 Score=188.48 Aligned_cols=403 Identities=12% Similarity=-0.009 Sum_probs=298.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+......+.+.|++++|+..|++.+... |+...|..+..+|.+.|++++|++.++...+..+. +...|..+..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~-----p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~ 202 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK-----PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 45567888999999999999999998764 46778999999999999999999999999987654 7789999999
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE------------------------- 333 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~------------------------- 333 (827)
+|...|++++|+..|......+-..+.. ...++..+........+...++.-..
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 9999999999999887765432111211 11111111110001111111100000
Q ss_pred c--CCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 334 R--NFRPS-FNIFASLVDS---MGKAGRLDTSMKVYMEMQGCG-HRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 334 ~--g~~p~-~~t~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 405 (827)
. ...+. ...+..+... ....+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..+++..+..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0 00000 0000111100 122468999999999999764 223 45678888999999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHH
Q 003353 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYT 484 (827)
Q Consensus 406 ~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~ 484 (827)
.. +...|..+...+...|++++|...|+++.+... .+...|..+...|...|++++|...|++.++ +.|+ ...+.
T Consensus 362 P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~ 437 (615)
T TIGR00990 362 PR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHI 437 (615)
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHH
Confidence 32 466788889999999999999999999987643 3678899999999999999999999999998 4564 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHH
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN------FIVRQLFES 558 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~ 558 (827)
.+...+.+.|++++|+..+++.++..+.....+..+...+...|++++|++.|++..+.....+. ..++..+..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 78889999999999999999999876655567888999999999999999999998875422111 112222223
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003353 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613 (827)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~ 613 (827)
+...|++++|.+++++.++..+. +...+..+...+.+.|++++|...+++....
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34579999999999999887654 5668899999999999999999999886543
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=5.1e-17 Score=190.36 Aligned_cols=340 Identities=12% Similarity=0.065 Sum_probs=217.2
Q ss_pred CCCCCCHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHH
Q 003353 158 LQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSA 237 (827)
Q Consensus 158 ~~~~p~~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ 237 (827)
.+-..+...++..+...|+.+.|+.+++.+.... +-+...+..++.++...|++++|...++++.... |.+..+
T Consensus 39 ~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~----P~~~~a 112 (656)
T PRK15174 39 AGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN----VCQPED 112 (656)
T ss_pred cccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC----CCChHH
Confidence 3334445556666667777777777777777764 4445566666666667777777777777777766 666777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH
Q 003353 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317 (827)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~ 317 (827)
+..+...+.+.|++++|...+++..+..+. +...|..+...+...|++++|...++.+...... +...+..+ ..+..
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~ 189 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLN 189 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHH
Confidence 777777777777777777777777765433 5666777777777777777777777766554322 22223222 33666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----
Q 003353 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT---- 393 (827)
Q Consensus 318 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---- 393 (827)
.|++++|...++.+.+....++...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 77777777777776665423334444455566677777777777777777654 3355666667777777777764
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
|+..|++..+.... +...+..+...+.+.|++++|...+++..+.... +...+..+...|.+.|++++|...|+++.+
T Consensus 269 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 269 AAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777766664332 4556666677777777777777777776664322 344555666667777777777777776665
Q ss_pred CCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003353 474 AGLRPGLST-YTALLTLLAKRKLVDVAAKILLEMKTMGY 511 (827)
Q Consensus 474 ~g~~pd~~t-~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 511 (827)
. .|+... +..+..++...|+.++|...|+++.+..+
T Consensus 347 ~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 347 E--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred h--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 3 344332 22334456667777777777776666543
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=8.4e-17 Score=188.48 Aligned_cols=379 Identities=10% Similarity=0.012 Sum_probs=298.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
-...++..+.+.|++++|..+++..+... +.+..++..++.+....|++++|...|+++.+..+. +...|..+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~----p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~ 118 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA----KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVAS 118 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC----CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 34556777889999999999999999887 777888888888888999999999999999987654 6788899999
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
.+.+.|++++|++.+++..+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHH
Confidence 9999999999999999998752 2356788889999999999999999999887765 3334444444 34788999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDI----AMSIFT 434 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~----A~~~~~ 434 (827)
|...++.+.+....++...+..+...+.+.|++++|++.++++.+.... +...+..+...|...|++++ |...|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999999887643345555666678889999999999999999987543 67778889999999999986 899999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 435 DMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 435 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
+..+.... +...+..+...+.+.|++++|...+++..+. .|+ ...+..+..++.+.|++++|.+.++.+.+..+..
T Consensus 275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 99876433 6778999999999999999999999999984 555 4567778889999999999999999999876554
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003353 514 DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIR----TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTS 589 (827)
Q Consensus 514 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 589 (827)
......+..++...|+.++|...|++..+.... +.......+-.++...+..++....+.++.-..-.-|..+|+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 431 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDEWER 431 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcccccCChHHHHH
Confidence 334445677889999999999999998865322 1233444555556666777666567776654333345555543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.3e-15 Score=182.29 Aligned_cols=399 Identities=11% Similarity=0.057 Sum_probs=242.1
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
..+..-.|+.++|++++..+.... +.....+..+...+.+.|++++|.+++++.++.. |.+...+..++.++..
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE----PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 556666777878887777776532 3455567777777778888888888888877765 6667777777777788
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.|++++|...++++.+..+. +.. |..+..++...|+.++|+..++++.+.... +...+..+..++...|..++|.+.
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence 88888888888877766443 455 777777777778888888888877775322 444555666677777777777777
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHH
Q 003353 328 FQEMKERNFRPSF------NIFASLVDSMG-----KAGRL---DTSMKVYMEMQGC-GHRPSAP-MY----VSLIESYAK 387 (827)
Q Consensus 328 ~~~m~~~g~~p~~------~t~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~ 387 (827)
++.+.. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 765553 2221 01112222221 11223 5666666666643 1122221 11 111233455
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHhH
Q 003353 388 AGKLDTALRLWDEMRIAGFR-PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP---TPSTYSCLLEMHASSGQVDS 463 (827)
Q Consensus 388 ~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~ 463 (827)
.|++++|+..|+++.+.+.. |+. ....+..+|...|++++|...|+++.+..... .......+..++.+.|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 67777777777777765432 322 12224556777777777777777766532211 12345555556677777777
Q ss_pred HHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCC
Q 003353 464 AMKLYNSMTSAG-----------LRPGL---STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS 529 (827)
Q Consensus 464 A~~l~~~m~~~g-----------~~pd~---~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~ 529 (827)
|..+++.+.+.. -.|+. ..+..+...+...|++++|+++++++....+.....+..+...+...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 777777776531 01221 2334455566667777777777777766655544566666667777777
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003353 530 VDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAK 581 (827)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 581 (827)
+++|++.+++..+.. |+ ...+......+.+.|++++|+.+++++++..+.
T Consensus 409 ~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 409 PRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 777777777666533 44 334444444566667777777777777664433
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=8.9e-16 Score=183.70 Aligned_cols=401 Identities=10% Similarity=0.028 Sum_probs=168.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g 284 (827)
.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|..+|++..+..+. +...+..++..+...|
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~----~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g 97 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM----QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 33444555555555555554322 344444555555555555555555555554443222 3444444445555555
Q ss_pred ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003353 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364 (827)
Q Consensus 285 ~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 364 (827)
++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..++|++.++
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 5555555555554431 11233 4444445555555555555555555443 2333344444444445555555554444
Q ss_pred HHHh-----CCCCCCHHHH---HHHHHHHHHcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCChh
Q 003353 365 EMQG-----CGHRPSAPMY---VSLIESYAKAGKL---DTALRLWDEMRIA-GFRPNFG-LF----TMIIESHAKSGKLD 427 (827)
Q Consensus 365 ~m~~-----~g~~p~~~~~---~~li~~~~~~g~~---~~A~~l~~~m~~~-g~~pd~~-t~----~~li~~~~~~g~~~ 427 (827)
.... .+...+.... ..+.......+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|+++
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 3221 1111111110 0011111122222 4445455544432 1111110 00 00022233445555
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 428 IAMSIFTDMERAGFL-PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP---GLSTYTALLTLLAKRKLVDVAAKIL 503 (827)
Q Consensus 428 ~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~li~~~~~~g~~~~A~~l~ 503 (827)
+|+..|+.+.+.+.. |+.. -..+...|...|++++|+..|+++.+..-.. .......+..++...|++++|.+++
T Consensus 255 eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 555555555543321 2111 1112344555555555555555544321000 0123333344445555555555555
Q ss_pred HHHHHCCCC-----------ch----HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003353 504 LEMKTMGYS-----------VD----VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESA 568 (827)
Q Consensus 504 ~~m~~~g~~-----------~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 568 (827)
+.+.+..+. |+ .....+...+...|+.++|+++++++.+.. +-+...+..+...+...|++++|
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 555443210 11 012233444445555555555555554332 11233444444445555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCc
Q 003353 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHK 616 (827)
Q Consensus 569 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~ 616 (827)
++.+++.++..+. +...+......+.+.|++++|..+++.+....|.
T Consensus 413 ~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 413 ENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 5555555443322 2334444444455555555555555554444433
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=4.6e-15 Score=177.69 Aligned_cols=542 Identities=9% Similarity=-0.033 Sum_probs=342.3
Q ss_pred ccCCCCCccccccCcCCCCCCHHHHHHHHHHHH-cCCCCccHHHHhhhCCCCCCHHHHHHHHHccCChhHHHHHHHHHHh
Q 003353 111 SVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVN-RWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKR 189 (827)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~l~~~~~~p~~~~~~~~l~~~~~~~~Al~~f~~~~~ 189 (827)
+|+..|.+++... |. ++.....+..... ..+...++...-......|+.......+..++++++|..+++.+..
T Consensus 62 ~A~~~l~~Al~~d----P~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~ 136 (987)
T PRK09782 62 TAIREFEYIHQQV----PD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLA 136 (987)
T ss_pred HHHHHHHHHHHhC----CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHHHH
Confidence 7777888887766 66 3444444444433 3444455555555566777777666666667888888888888887
Q ss_pred CCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 190 QSWYVPGDECYVMLFDV--------LNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKK 260 (827)
Q Consensus 190 ~~~~~p~~~~~~~li~~--------l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 260 (827)
.. +-+...+..+... |.+. ++|.+.++ ...... .++.. ..-.+...|.+.|++++|++++.+
T Consensus 137 ~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~---~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 137 QQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAA---SPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred hC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCC---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 65 3344555544444 4444 34444443 221111 22233 333447777777777778777777
Q ss_pred hHhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C
Q 003353 261 VLDSDCKIDTQSYNVLMTLFLN-KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR-P 338 (827)
Q Consensus 261 m~~~g~~p~~~~~n~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p 338 (827)
+.+.++. +..-+..|..+|.+ .++ +++..+++.. ++-|...+..+...|.+.|+.++|.+++.++...... |
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 7776643 44445556666666 255 5666664431 2246666667777777777777777666655432111 1
Q ss_pred CHHH----------------------------------------------------------------------------
Q 003353 339 SFNI---------------------------------------------------------------------------- 342 (827)
Q Consensus 339 ~~~t---------------------------------------------------------------------------- 342 (827)
...+
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence 1111
Q ss_pred -----------------HHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCC---HHHHHHH---
Q 003353 343 -----------------FASLVDSMGKAGRLDTSMKVYMEMQGC-G-HRPSAPMYVSLIESYAKAGK---LDTALRL--- 397 (827)
Q Consensus 343 -----------------~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~g~---~~~A~~l--- 397 (827)
...+.-...+.|+.++|.++++..... + ...+....+-++..|.+.+. ..++..+
T Consensus 362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 011111123345566666666665541 1 12344455577777777765 3344333
Q ss_pred -------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003353 398 -------------------WDEMRIA-GF-RP--NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEM 454 (827)
Q Consensus 398 -------------------~~~m~~~-g~-~p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 454 (827)
.+..... +. .+ +...|..+..++.. ++.++|...+.+..... |+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 1111111 11 23 56677777777776 89999999888877653 565444445555
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHH
Q 003353 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534 (827)
Q Consensus 455 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~ 534 (827)
+.+.|++++|...|+++... .|+...+..+..++.+.|+.++|.+.+++.++..+........+.....+.|++++|.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 67899999999999998763 4555666777788899999999999999999876444334444444555679999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 003353 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK 614 (827)
Q Consensus 535 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~ 614 (827)
..+++..+.. |+...+..+...+.+.|++++|+..+++.++..+. +...+..+..++...|+.++|...++......
T Consensus 597 ~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998654 56778888888999999999999999999998766 67788888899999999999999999887777
Q ss_pred CchhHHHhhh--ccCCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 003353 615 HKAHAFLCGL--FTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENK 686 (827)
Q Consensus 615 ~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~ 686 (827)
|........+ .....+..+ .+...++... ...|+.. .+....++.+.+..++++|.+-+++.+...
T Consensus 674 P~~~~a~~nLA~al~~lGd~~----eA~~~l~~Al-~l~P~~a-~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMA----ATQHYARLVI-DDIDNQA-LITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHH----HHHHHHHHHH-hcCCCCc-hhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7655443222 221122222 3333333321 2233322 223367788888888888888887776554
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=3.7e-14 Score=166.68 Aligned_cols=437 Identities=9% Similarity=0.038 Sum_probs=323.7
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~-~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
..+..+.|+++.|+..|+.+.+.. +.+. ..+ -++..+...|+.++|+..+++..... +........+...|.
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~----n~~~~~llalA~ly~ 113 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM----NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC----CCCHHHHHHHHHHHH
Confidence 444557899999999999999875 2222 233 77788888999999999999998322 455556666678999
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
..|++++|+++|+++.+..+. |...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999999998766 6777888889999999999999999999875 4666666555555555667767999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHH---------cCC---HH
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY--VSLIESYAK---------AGK---LD 392 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~---------~g~---~~ 392 (827)
.++++.+.. +.+...+..+..++.+.|-...|.++..+-... +.+....+ ...+.-..+ ..+ .+
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 999999986 667788888999999999999998877654321 11111111 000111111 122 34
Q ss_pred HHHHHHHHHHHc-CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 003353 393 TALRLWDEMRIA-GFRPNF-GLF----TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466 (827)
Q Consensus 393 ~A~~l~~~m~~~-g~~pd~-~t~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 466 (827)
.|+.-++.+... +..|.. ..| .-.+-++...|++.++++.|+.+...|.+....+--++.++|...++.++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 455556665542 222322 111 23455778899999999999999988766455677889999999999999999
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CchH----hHHHHHHHHHH
Q 003353 467 LYNSMTSAG-----LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY-----------SVDV----SASDVLMVYIK 526 (827)
Q Consensus 467 l~~~m~~~g-----~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~~~~----~~~~li~~y~~ 526 (827)
+|.++.... ..++......|.-++...+++++|..+++.+.+..+ .|+. ....++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999997642 122344457788899999999999999999988433 1222 23445677889
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606 (827)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l 606 (827)
.|+..+|.+.++++.... +-|..+...+...+...|.+.+|++.++......+. |..+......++...|++++|..+
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999997654 336778888888899999999999999877766444 677888888899999999999999
Q ss_pred HHHHhhccCchh
Q 003353 607 MAILSATKHKAH 618 (827)
Q Consensus 607 ~~~l~~~~~~~~ 618 (827)
++.+....|...
T Consensus 507 ~~~l~~~~Pe~~ 518 (822)
T PRK14574 507 TDDVISRSPEDI 518 (822)
T ss_pred HHHHHhhCCCch
Confidence 988776655433
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.2e-14 Score=160.73 Aligned_cols=555 Identities=13% Similarity=0.082 Sum_probs=382.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCccHHHHhhhCC----CCCCHHH-HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHH
Q 003353 127 KPFLNASAVAKIVEVVNRWKWGPELETQLDKLQ----FVPKMVH-ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYV 201 (827)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~----~~p~~~~-~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~ 201 (827)
+|...++.+.+++-.+.+..+-.++.-+...+. ..||+.. ....+..+++.+.|+..|..+.+.+ +.++.++.
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv 237 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALV 237 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHH
Confidence 355567778888888887766665554444333 2344433 3455567888888999999998875 23444444
Q ss_pred HHHHHHHh---cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CCHHHHHHH
Q 003353 202 MLFDVLNE---SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--IDTQSYNVL 276 (827)
Q Consensus 202 ~li~~l~~---~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~n~l 276 (827)
.|...-.. ...+..+..++...-..+ +.++.+.+.|...|.-.|+++.+..+...+...... .-..+|--+
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n----~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~ 313 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKEN----NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL 313 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhc----CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44333333 334566777777776666 788899999999999999999999998888764311 112356778
Q ss_pred HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG-- 354 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-- 354 (827)
.++|-..|++++|...|.+..+..-.--+..+-.|...+.+.|+++.+...|+...+.. +.+..|...|...|+..+
T Consensus 314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh
Confidence 88999999999999999888765322113455677888999999999999999998875 666778888888888775
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCChhH
Q 003353 355 --RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM----RIAGFRPNFGLFTMIIESHAKSGKLDI 428 (827)
Q Consensus 355 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~pd~~t~~~li~~~~~~g~~~~ 428 (827)
..+.|..++.+..+.- +.|...|-.+...+.. ++...++..|... ...+-.+.....|.+...+...|++++
T Consensus 393 ~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred hHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHH
Confidence 5677777777776654 4467778777766654 4444446666543 344555677888999999999999999
Q ss_pred HHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 003353 429 AMSIFTDMERA---GFLPTP------STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS-TYTALLTLLAKRKLVDV 498 (827)
Q Consensus 429 A~~~~~~m~~~---g~~p~~------~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~g~~~~ 498 (827)
|...|...... ...+|. .+--.+...+-..++.+.|.+.|..+.+. .|.-+ .|..++-.....+...+
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHH
Confidence 99999987754 122222 22333556667778899999999999883 46544 44444433334578888
Q ss_pred HHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHH------------HcCCH
Q 003353 499 AAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG-IRTNNFIVRQLFESCM------------KNALY 565 (827)
Q Consensus 499 A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~------------~~g~~ 565 (827)
|...+.++....-.....+.-+...|.+...+..|.+-|....+.- ..+|.+..-+|.+.|. ..+..
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 9999988887655555566667778888888888888666665432 2367777767766554 33467
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCch-hHHH-hhhccCCccccchhHHHHHHHh
Q 003353 566 ESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA-HAFL-CGLFTGPEQRKQPVLSFVREFF 643 (827)
Q Consensus 566 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~-~~~~-~~l~~~~~~~~~~~~~~~~~~~ 643 (827)
+.|+++|.+.++..++ |...=+.+.-.++.+|++.+|+.+|.+...+..+. +..+ .+.+.. .+.....+.+++
T Consensus 629 ~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~----e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV----EQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH----HHHHHHHHHHHH
Confidence 8899999999988777 77777888889999999999999999988765422 2111 000000 011122333333
Q ss_pred hccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhh
Q 003353 644 HGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQH 697 (827)
Q Consensus 644 ~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~ 697 (827)
+..-...-+...+.+.++|..++.+.|.+.+|.+....+....|....+.||..
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 332112223334556789999999999999999999999888887777777743
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=3.6e-13 Score=158.43 Aligned_cols=442 Identities=12% Similarity=0.080 Sum_probs=328.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCCccHHHHhhhCCCCCCHH----HHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 003353 128 PFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMV----HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVML 203 (827)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p~~~----~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~l 203 (827)
|......+..++...+.....+++...-..+...|+.. ..+.++...|+.++|+..++.+... .+........+
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llal 108 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASA 108 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHH
Confidence 33344567777888888777777777777777777642 3456666789999999999998832 23444455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
...+...|++++|.++|+++++.. |.+..++..++..|...++.++|++.++++.... |+...+..++..+...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d----P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~ 182 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD----PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhc
Confidence 778899999999999999999998 8888888899999999999999999999998764 5555665555555556
Q ss_pred CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH------HHHHHHH-----Hh
Q 003353 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF------ASLVDSM-----GK 352 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~li~~~-----~~ 352 (827)
++..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.+. +.+....+ ..++..- ..
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 67767999999999874 336777888999999999999998776653321 11111111 1111100 01
Q ss_pred cCC---HHHHHHHHHHHHhC-CCCCC-HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 353 AGR---LDTSMKVYMEMQGC-GHRPS-APM----YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423 (827)
Q Consensus 353 ~g~---~~~A~~~~~~m~~~-g~~p~-~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 423 (827)
..+ .+.|+.-++.+... +-.|. ... .--.+-++...|++.++++.|+.|...|......+-.++.++|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 122 34455555555541 11232 222 2234567889999999999999999988665566888999999999
Q ss_pred CChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-------------CCCCHH-HHH
Q 003353 424 GKLDIAMSIFTDMERAG-----FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG-------------LRPGLS-TYT 484 (827)
Q Consensus 424 g~~~~A~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~pd~~-t~~ 484 (827)
++.++|..+|+.+.... ..++......|..+|...+++++|..+++.+.+.- ..||-. .+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 99999999999997643 12345556789999999999999999999998731 123333 334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcC
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNA 563 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 563 (827)
.++..+...|++.+|++.++++....+........+.+.+...|.+.+|++.++.+... .|+ ..+....+.++...|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhh
Confidence 45667889999999999999999988777778889999999999999999999777654 454 456667777888999
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 003353 564 LYESAKPLLETYVESAAK 581 (827)
Q Consensus 564 ~~~~A~~~~~~m~~~g~~ 581 (827)
++++|..+.+.+.+..++
T Consensus 499 e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 499 EWHQMELLTDDVISRSPE 516 (822)
T ss_pred hHHHHHHHHHHHHhhCCC
Confidence 999999999999887555
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=5.3e-13 Score=149.91 Aligned_cols=504 Identities=13% Similarity=0.055 Sum_probs=347.7
Q ss_pred HHHHccCChhHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 169 QALKVINDSDTSLSLFRWAKRQS-WYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 169 ~~l~~~~~~~~Al~~f~~~~~~~-~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
.+...-+++..|+.+|+.+.+.+ ..+||+. -.+..++.+.|+.+.|+..|...++.+ |.++.++-.|...-..
T Consensus 172 ~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLd----p~~v~alv~L~~~~l~ 245 (1018)
T KOG2002|consen 172 RIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLD----PTCVSALVALGEVDLN 245 (1018)
T ss_pred HHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcC----hhhHHHHHHHHHHHHH
Confidence 33445578888888888876653 3445543 233466678888888888888888876 6666665555444333
Q ss_pred c---CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCcc--CCHHHHHHHHHHHHHcCCHH
Q 003353 248 A---DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS--LDGSTYELMIPSLAKSGRLD 322 (827)
Q Consensus 248 ~---g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~t~~~li~~~~~~g~~~ 322 (827)
. ..+..+..++...-..... |++..+.|...|.-.|+++.++.+...+...-.. .-...|--+.++|-..|+++
T Consensus 246 ~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 246 FNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred ccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 3 3456677777766655443 7788889999999999999999999988765311 12345778889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 003353 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG----KLDTALRLW 398 (827)
Q Consensus 323 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~l~ 398 (827)
+|...|.+..+..-.-.+..+-.+...|.+.|+++.+...|+...+.. +.+..+...+...|...+ ..+.|..++
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 999999998876522224455678899999999999999999998764 445678888888887775 567777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 003353 399 DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME----RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474 (827)
Q Consensus 399 ~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 474 (827)
.+..+.-+ -|...|-.+...+... +...++.+|.... ..+-.+-+...|.+...+...|++++|...|.+....
T Consensus 404 ~K~~~~~~-~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 404 GKVLEQTP-VDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 77776543 3677777776666554 4444466666543 4555678889999999999999999999999988764
Q ss_pred ---CCCCCH-----H-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 003353 475 ---GLRPGL-----S-TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545 (827)
Q Consensus 475 ---g~~pd~-----~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 545 (827)
...+|. . +--.+...+...++.+.|.+.|..+++..+.--..+-.++-+-...+...+|...+....+.+
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 223333 1 222344456678899999999999998755433445555544445578889999999888643
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHhh
Q 003353 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESA-AKVDLVLYTSVLAHLVR------------CQDEQNERHLMAILSA 612 (827)
Q Consensus 546 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~------------~g~~~~a~~l~~~l~~ 612 (827)
..+...++.+...+.+...+..|.+-|+...+.- ..+|.....+|.+.|.+ .+..++|.+++.+...
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 2344444444446777777888888777766542 33688888888876654 2345777888887777
Q ss_pred ccCchhHHHhhhccCCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 613 TKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 613 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
+.|.+.....|+..-.... .-.+.+...|.++........+.++ .|.+.|..+|++..|.++|+...++-.
T Consensus 641 ~dpkN~yAANGIgiVLA~k--g~~~~A~dIFsqVrEa~~~~~dv~l--Nlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 641 NDPKNMYAANGIGIVLAEK--GRFSEARDIFSQVREATSDFEDVWL--NLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred cCcchhhhccchhhhhhhc--cCchHHHHHHHHHHHHHhhCCceee--eHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7765554433432222122 2244566666665433333334444 799999999999999999999987644
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=1.5e-10 Score=124.77 Aligned_cols=475 Identities=11% Similarity=0.040 Sum_probs=369.1
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260 (827)
Q Consensus 181 l~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (827)
.++++.+.+.. +.++..|-..+ ...+.++|..++.+..+.- +.+...|. +|++..-++.|..++++
T Consensus 366 ~RVlRKALe~i--P~sv~LWKaAV----elE~~~darilL~rAvecc----p~s~dLwl----AlarLetYenAkkvLNk 431 (913)
T KOG0495|consen 366 KRVLRKALEHI--PRSVRLWKAAV----ELEEPEDARILLERAVECC----PQSMDLWL----ALARLETYENAKKVLNK 431 (913)
T ss_pred HHHHHHHHHhC--CchHHHHHHHH----hccChHHHHHHHHHHHHhc----cchHHHHH----HHHHHHHHHHHHHHHHH
Confidence 45666666652 44555565443 4556666888888888764 66666654 56777889999999999
Q ss_pred hHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh----HhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM----EKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336 (827)
Q Consensus 261 m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m----~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 336 (827)
..+.- +.+...|.+-...=-.+|+.+...++.++- ...|+..+...|-.=...|-+.|..-.+..+....+..|+
T Consensus 432 aRe~i-ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv 510 (913)
T KOG0495|consen 432 AREII-PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV 510 (913)
T ss_pred HHhhC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Confidence 98754 458899988777777889999988887664 5678999999998888899999999999999999988886
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003353 337 RP--SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT 414 (827)
Q Consensus 337 ~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 414 (827)
.- -..||+.-.+.|.+.+.++-|..+|...++.- +.+...|......--..|..++...+|++....-. -....|-
T Consensus 511 Eeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwl 588 (913)
T KOG0495|consen 511 EEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWL 588 (913)
T ss_pred ccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHH
Confidence 53 34689999999999999999999999988753 44667888887777778999999999999988643 3556666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003353 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494 (827)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 494 (827)
.....+-..|+...|..++....+.... +...|-+-+..-..+.++++|..+|.+... ..|+...|..-+......+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhh
Confidence 6677778899999999999999987544 788899999999999999999999999987 5688888888888788899
Q ss_pred CHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003353 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLE 573 (827)
Q Consensus 495 ~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 573 (827)
..++|.+++++.++.-+.-...|..+...+-+.++++.|.+.|..-.+ ..|+ ...|-.|...-.+.|..-.|..+|+
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 999999999999997665556788888899999999999998876553 2344 4466666666668899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HhhccCchhHHHhhhccCCccccchhHHHHHHHhhcccccccc
Q 003353 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI-LSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEE 652 (827)
Q Consensus 574 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~-l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (827)
+..-.+++ |...|-..|..=.|.|..+.|..++.+ ++.|....--....++..+..+... .....+.....+
T Consensus 744 rarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT---ks~DALkkce~d--- 816 (913)
T KOG0495|consen 744 RARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT---KSIDALKKCEHD--- 816 (913)
T ss_pred HHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch---HHHHHHHhccCC---
Confidence 99988888 889999999999999999999998765 5555543222223333322222221 122223332212
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 653 GAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 653 ~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
+.+.=+...++|.-.++++|++-|+++++.++
T Consensus 817 ---phVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 817 ---PHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 23334788999999999999999999998764
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=7.6e-12 Score=128.34 Aligned_cols=401 Identities=14% Similarity=0.210 Sum_probs=284.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc--CCH-------------------------
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA--DKL------------------------- 251 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~--g~~------------------------- 251 (827)
+=+.++. +...|.+.++.-+|+.|.+.+. +.+..+-..|...-+-- .+.
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~---~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENV---DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCC---CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 4455554 4567889999999999999886 66666655554432221 111
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331 (827)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 331 (827)
+-|.-+|+... ....+|..||.++|+--..+.|.+++++-.+...+.+..+||.+|.+-.- ....+++.+|
T Consensus 194 ~vAdL~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EM 264 (625)
T KOG4422|consen 194 AVADLLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEM 264 (625)
T ss_pred cHHHHHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHH
Confidence 11222222222 36679999999999999999999999999988888999999999987543 3338899999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc--
Q 003353 332 KERNFRPSFNIFASLVDSMGKAGRLDT----SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT-ALRLWDEMRIA-- 404 (827)
Q Consensus 332 ~~~g~~p~~~t~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~-- 404 (827)
....+.||..|+|+++++.++.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++...
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999998775 45677889999999999999999999999888744 55555555432
Q ss_pred --CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003353 405 --GFRP----NFGLFTMIIESHAKSGKLDIAMSIFTDMERA----GFLPT---PSTYSCLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 405 --g~~p----d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~---~~t~~~li~~~~~~g~~~~A~~l~~~m 471 (827)
.++| |...+...++.|.+..+.+.|.++..-+... -+.|+ ..-|..+....|+....+.-+..|+.|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 4556777888888999999999887766532 12233 234667888889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-hHHHHHHHHHHcC-C--------HH-----HHHHH
Q 003353 472 TSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDG-S--------VD-----HALRW 536 (827)
Q Consensus 472 ~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~y~~~g-~--------~~-----~A~~~ 536 (827)
.-.-.-|+..+...++++..-.|.++-.-+++.+++..|..-.. .-.-++..+++.. + +. -|..+
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 98777899999999999999999999999999998887743332 1222222333222 0 00 11112
Q ss_pred HH-------HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHH---HHHHHHHhcCCHHHHHH
Q 003353 537 LR-------FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK-VDLVLYT---SVLAHLVRCQDEQNERH 605 (827)
Q Consensus 537 ~~-------~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~---~ll~a~~~~g~~~~a~~ 605 (827)
++ +|..... ....++...--+.+.|..++|.++|..+.+.+-+ |-....+ -++++-.+.++...|..
T Consensus 505 ~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 11 2222222 3445555555677999999999999998765543 3333444 55566677778888888
Q ss_pred HHHHHhhcc
Q 003353 606 LMAILSATK 614 (827)
Q Consensus 606 l~~~l~~~~ 614 (827)
.++.+...+
T Consensus 583 ~lQ~a~~~n 591 (625)
T KOG4422|consen 583 VLQLASAFN 591 (625)
T ss_pred HHHHHHHcC
Confidence 877775543
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.4e-12 Score=131.92 Aligned_cols=361 Identities=13% Similarity=0.159 Sum_probs=180.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+..+|..||.++++--..+.|.+++++.....+ ..+..++|.+|.+-.-... .++..+|....+.||..|+|+
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~---kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKG---KVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh---eeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 445566666666665555666666665555443 5555566655554332221 455555555555566666666
Q ss_pred HHHHHHHcCChhH----HHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHH----HcCCC----CCHHH
Q 003353 276 LMTLFLNKGLPYK----AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA-AIKLFQEMK----ERNFR----PSFNI 342 (827)
Q Consensus 276 li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~-A~~~~~~m~----~~g~~----p~~~t 342 (827)
++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++. .+.++ .|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 6666666555443 34455555556666666666666665555555422 222222222 11111 12333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEMQGCG----HRPS---APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 415 (827)
|...++.|.+..+.+-|.++..-..... +.|+ ..-|..+..+.|+....+.-...|+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 4445555555555555555544333210 1122 12344455555555555555566666555555555555555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C
Q 003353 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR-K 494 (827)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-g 494 (827)
++.+..-.|+++-.-+++.++...|.. ++.. --++++..|.+....|+...-..+-.+.++. -
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght-----~r~~-----------l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHT-----FRSD-----------LREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhh-----hhHH-----------HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 555555555555555555555543311 1111 1122333333332333322111111111110 0
Q ss_pred CHHH-HHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 495 LVDV-AAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI----RTNNFIVRQLFESCMKNALYESAK 569 (827)
Q Consensus 495 ~~~~-A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~A~ 569 (827)
++-+ .+..-.++.+... +....+.+...+.+.|+.++|-++|....+++- .|.-.....++++-.+......|.
T Consensus 503 d~~e~~e~~~~R~r~~~~-~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQDW-PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHHhhHHHHHhccC-ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 1111 1111122332222 223456666678899999999999998865542 233333446667777888888888
Q ss_pred HHHHHHHHCCC
Q 003353 570 PLLETYVESAA 580 (827)
Q Consensus 570 ~~~~~m~~~g~ 580 (827)
..++-|...+.
T Consensus 582 ~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 582 EVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHcCc
Confidence 88888865543
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=2.4e-11 Score=135.98 Aligned_cols=363 Identities=12% Similarity=0.051 Sum_probs=224.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~ 287 (827)
.-.|++++|.+++.++++.. +.+...|..|...|-..|+.+++...+-..-...++ |...|-.+.....+.|+++
T Consensus 150 farg~~eeA~~i~~EvIkqd----p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD----PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC----ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 33466666666666666665 666666666666666666666666655544443333 5566666666666666666
Q ss_pred HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHHHHHHHH
Q 003353 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF----ASLVDSMGKAGRLDTSMKVY 363 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~li~~~~~~g~~~~A~~~~ 363 (827)
+|.-.|.+.++.. +++...+---...|-+.|+...|...|.++.+...+.|..-+ -.++..+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666542 224444444455566666666666666666655422222212 22334445555556666666
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------------CCCHHHHHH
Q 003353 364 MEMQGCG-HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF---------------------------RPNFGLFTM 415 (827)
Q Consensus 364 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------~pd~~t~~~ 415 (827)
+.....+ -..+...++.++..+.+...++.|......+..... .++.... -
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 6655411 123344566666666666666666666666554221 2222221 1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003353 416 IIESHAKSGKLDIAMSIFTDMERAG--FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493 (827)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 493 (827)
++-++......+....+.....+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223344444444555555555554 33356678888889999999999999999888764444677888888888899
Q ss_pred CCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHHcCCH
Q 003353 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSS--------GIRTNNFIVRQLFESCMKNALY 565 (827)
Q Consensus 494 g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~ll~~~~~~g~~ 565 (827)
|.+++|.+.++..+...+.....-.+|...|.+.|+.++|.+.++.+... +..|+.-+.......+.+.|+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 99999999999988866555556667777888899999999988886522 2344544555555667788888
Q ss_pred HHHHHHHHHHHH
Q 003353 566 ESAKPLLETYVE 577 (827)
Q Consensus 566 ~~A~~~~~~m~~ 577 (827)
++=+.+..+|+.
T Consensus 543 E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 543 EEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHH
Confidence 876666666654
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=1e-10 Score=126.00 Aligned_cols=358 Identities=10% Similarity=0.050 Sum_probs=178.2
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCCCCHHHHHHHHHHHH
Q 003353 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVH----DSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 171 l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~----~~~~~~~~~~~~~~~li~~~~ 246 (827)
|.++.-++.|.+++..+++. .+.++..|.+-...=-.+|+.+...++.++-+. .|+ ..+...|-.=...|-
T Consensus 416 larLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv---~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGV---EINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcce---eecHHHHHHHHHHHh
Confidence 33334444444444444443 234444444444444444444444444443222 222 344444444444444
Q ss_pred HcCCHHHHHHHHHHhHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKI--DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 324 (827)
+.|..-.+..+....+.-|++- -..||+.-...|.+.+..+-|..+|...++- .+-+...|......--.-|..++.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 4444444444444444433321 1234555555555555555555555555442 122333444444333344555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 325 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
..+|+++...- +-....|.....-+-..|++..|..++.+..+.. +.+...|-.-+.....+..++.|..+|.+....
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 55555555442 3333445545555555566666666666655543 224455555555556666666666666655542
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-HHH
Q 003353 405 GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL-STY 483 (827)
Q Consensus 405 g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~ 483 (827)
.|+...|.--+...--.+..++|.+++++.++. ++--...|-.+...+-+.++++.|.+.|..-.+ ..|+. ..|
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLW 722 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLW 722 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHH
Confidence 344444444444444455666666666555543 211233455555555556666666655555444 23433 244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 484 TALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
..|...-.+.|.+-.|..+++...-.+++....|...|.+=.+.|+.+.|..+..+++
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555666666666666666666555566666666666666666665555544
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=3.7e-10 Score=126.73 Aligned_cols=507 Identities=11% Similarity=0.115 Sum_probs=335.7
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+...|+.++|.+++..+.++. +.....|.+|...|-+.|+.+++...+-.+.... |.|...|..+.....+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~----p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN----PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHh
Confidence 334445599999999999999997 5778899999999999999999999887777766 8888999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHH----HHHHHHHHHHHcCCHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS----TYELMIPSLAKSGRLDA 323 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~li~~~~~~g~~~~ 323 (827)
.|.+++|.-+|.+.++..+. +...+---+..|-+.|+...|.+.|.++.+...+.|.. +--.+++.+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999998754 55554556778899999999999999998864322222 23344566777788899
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------------------------CCCH
Q 003353 324 AIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH---------------------------RPSA 375 (827)
Q Consensus 324 A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------------~p~~ 375 (827)
|.+.++.....+ -..+...++.++..|.+...++.|......+..... .++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 999998887632 234556788999999999999999988887776211 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003353 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAG--FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453 (827)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 453 (827)
.... +.-++.+....+....+.....+.. +.-+...|.-+.++|...|++.+|..+|..+......-+...|-.+..
T Consensus 379 ~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 2212 2223444444444445555555554 444567788899999999999999999999997655557889999999
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCchH-hHHHHHHH
Q 003353 454 MHASSGQVDSAMKLYNSMTSAGLRPGLS-TYTALLTLLAKRKLVDVAAKILLEMKTMG--------YSVDV-SASDVLMV 523 (827)
Q Consensus 454 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~~~~-~~~~li~~ 523 (827)
+|-..|.+++|.+.|+..+. +.|+.. .-.+|-..+.+.|+.|+|.+.+..+..-+ ..|+. ......+.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998 566543 55566677889999999999999876322 22222 23455667
Q ss_pred HHHcCCHHHHHHHHHHHhhCC-----CCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHH------HHH
Q 003353 524 YIKDGSVDHALRWLRFMGSSG-----IRT-----------------NNFIVRQLFESCMKNALYESAKPLL------ETY 575 (827)
Q Consensus 524 y~~~g~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~ll~~~~~~g~~~~A~~~~------~~m 575 (827)
|.+.|+.++=+.+-..|+... +-| ........+.+-.+.++.....+-. .--
T Consensus 536 l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~ 615 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAV 615 (895)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhh
Confidence 888898887666555554311 101 1111112222222332211111111 111
Q ss_pred HHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcc---Cchh-----HHHhhhccC-CccccchhHHHHHHHhh
Q 003353 576 VESAAKVD-L-VLYTSVLAHLVRCQDEQNERHLMAILSATK---HKAH-----AFLCGLFTG-PEQRKQPVLSFVREFFH 644 (827)
Q Consensus 576 ~~~g~~pd-~-~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~---~~~~-----~~~~~l~~~-~~~~~~~~~~~~~~~~~ 644 (827)
...|..-| . ..+.-++.++++.++.++|..+...+.... .... .+ +++... ....-+.+.+.++.++.
T Consensus 616 e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~-~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 616 ELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQF-LGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11222222 2 355667778888888888888766544322 1111 11 121111 11122334455555443
Q ss_pred ccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 003353 645 GIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENK 686 (827)
Q Consensus 645 ~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~ 686 (827)
.......+ --..+||+..+.+.+.|+-..=.+.+..+....
T Consensus 695 ~~~~~~~~-~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~ 735 (895)
T KOG2076|consen 695 QFQFYLDV-YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKN 735 (895)
T ss_pred HHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 31111010 114567877788888887776666666654443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=3.5e-12 Score=131.16 Aligned_cols=434 Identities=12% Similarity=0.108 Sum_probs=282.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 176 DSDTSLSLFRWAKRQSWYVPGDECY-VMLFDVLNESRDFDGMLSLFDEMVHDSSK-NGISLFSAYNRVIQYLAKADKLEM 253 (827)
Q Consensus 176 ~~~~Al~~f~~~~~~~~~~p~~~~~-~~li~~l~~~g~~~~A~~l~~~m~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 253 (827)
...+|+..++-+.+..-| |+...+ -.+.+.+.+.+.+.+|++.++-.+..-.. +........+.+...+.+.|.+++
T Consensus 216 m~~ealntyeiivknkmf-~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMF-PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHhhhhhhhhccccc-CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 345688888877776544 443333 34667788999999999999877754210 112234567777788899999999
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccC------------CHHHHHHHHH-----HHH
Q 003353 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL------------DGSTYELMIP-----SLA 316 (827)
Q Consensus 254 A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------d~~t~~~li~-----~~~ 316 (827)
|+..|+...+.. ||..+--.|+-++..-|+.++..+.|.+|+.....| +....+..|+ -.-
T Consensus 295 ainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 999999988753 787765556666667899999999999998643333 3333332222 222
Q ss_pred HcCC--HHHHHHHHHHHHHcCCCCCHHH---H------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003353 317 KSGR--LDAAIKLFQEMKERNFRPSFNI---F------------------ASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373 (827)
Q Consensus 317 ~~g~--~~~A~~~~~~m~~~g~~p~~~t---~------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 373 (827)
+.+. -+++.-.--+++.--+.|+... | -.-..-|.+.|+++.|.+++.-..+..-+.
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~ 452 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT 452 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh
Confidence 2111 1112111112221112222110 0 011234678999999999998887654222
Q ss_pred CHHHHHHHHHHH-HH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 374 SAPMYVSLIESY-AK-AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451 (827)
Q Consensus 374 ~~~~~~~li~~~-~~-~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 451 (827)
-...-|.|-..+ .+ ..++.+|.+.-+...... .-|....+.-.......|++++|.+.|++.+...-.-....|| +
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-i 530 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-I 530 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-h
Confidence 222223222222 22 346778887777665432 1233333333344556899999999999998753322223333 2
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
.-.+-..|++++|++.|-.+..- +.-+......+.+.|....+..+|++++.+....-+........|.+.|-+.|+-.
T Consensus 531 glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 531 GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence 33567789999999999877652 23456677788888999999999999998887654444457788999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Q 003353 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHL-VRCQDEQNERHLMAIL 610 (827)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~l~~~l 610 (827)
.|.+..-.--+ -++.+..++.-|..-|....-+++|+..|++.. -+.|+..-|-.++..| -|.|++++|..+++..
T Consensus 610 qafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 610 QAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99888765442 244566677777777888888899999999864 3789999998888655 4589999999998877
Q ss_pred hhccCchh
Q 003353 611 SATKHKAH 618 (827)
Q Consensus 611 ~~~~~~~~ 618 (827)
-..-|...
T Consensus 687 hrkfpedl 694 (840)
T KOG2003|consen 687 HRKFPEDL 694 (840)
T ss_pred HHhCccch
Confidence 65554433
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.9e-09 Score=111.03 Aligned_cols=443 Identities=10% Similarity=0.147 Sum_probs=319.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...|-.-..-=...+++..|.++|+..+... ..+...|-.-+.+-.++..+..|..++++....-+..|. .|--
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd----~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyK 146 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD----YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYK 146 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHH
Confidence 44455544444456778888899999888776 677888888888889999999999999888765433333 3444
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
.+..=-..|+...|.++|++..+ ..|+...|.+.|+.=.+-+.++.|..++++..- +.|++.+|--....=-+.|+
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCc
Confidence 44454557889999999988876 578999999999988888999999999988875 35888888888888888899
Q ss_pred HHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 003353 356 LDTSMKVYMEMQGC-GH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN-FGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 356 ~~~A~~~~~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
...|..+|+...+. |- .-+...+.+....=.+...++.|.-+|+-..+.-..-. ...|......--+-|+.....+.
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 99999999887753 10 11223444444444456778888888887776532211 33444444433345554333322
Q ss_pred --------HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH--HHHHHH-----HHH---HhcC
Q 003353 433 --------FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS--TYTALL-----TLL---AKRK 494 (827)
Q Consensus 433 --------~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~li-----~~~---~~~g 494 (827)
++.+.+.+ +.|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|...| -+| ....
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444443 237778888888888899999999999999875 555321 222211 122 2478
Q ss_pred CHHHHHHHHHHHHHCCCCchHhHHHHHHHH----HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVY----IKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570 (827)
Q Consensus 495 ~~~~A~~l~~~m~~~g~~~~~~~~~li~~y----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 570 (827)
+++.+.++++..++.-+....++..+=.+| .++.++..|.+++.... |.-|-..++...|..-.+.+.++.+..
T Consensus 381 d~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 381 DVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999984333334555443344 47899999999999887 788999999888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHhhcccccc
Q 003353 571 LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYEL 650 (827)
Q Consensus 571 ~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (827)
++++.++-++. |..+|.....-=-..|+.+.|+.+++....... + ++
T Consensus 459 LYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~--------------------l------------dm 505 (677)
T KOG1915|consen 459 LYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPA--------------------L------------DM 505 (677)
T ss_pred HHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc--------------------c------------cc
Confidence 99999998887 888998887777778999999999876543111 0 11
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 003353 651 EEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF 688 (827)
Q Consensus 651 ~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~ 688 (827)
.-..|-+.||.=...|..++|+.++++.+++...
T Consensus 506 ----pellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 506 ----PELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred ----HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 1245678888888899999999999999988654
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.3e-10 Score=117.17 Aligned_cols=357 Identities=12% Similarity=0.040 Sum_probs=261.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCC--HHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD--GSTYE 309 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~ 309 (827)
..|...+-.....+.+.|....|++.|......- +..|.+-+....-.-+.+.+. ..... ...| ...=-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~----~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILS----ILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHH----HHHhc-CcccchHHHHH
Confidence 5667777777777888899999999998887632 234444333322222233222 22211 1111 12223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHH
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH--RPSAPMYVSLIESYAK 387 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~ 387 (827)
.+..++-...+.+++.+-.+.....|++.+...-+....+.....++++|+.+|+++.+... --|..+|+.++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 45567777788999999999999999877666666666777788999999999999998742 126678877663 33
Q ss_pred cCCHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 003353 388 AGKLDTALRLWDEM--RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465 (827)
Q Consensus 388 ~g~~~~A~~l~~~m--~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 465 (827)
+.+-. +..+.+- .-...+| .|...+.+-|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|.
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 33222 1122211 1122333 56677788888899999999999999987544 6678999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 003353 466 KLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544 (827)
Q Consensus 466 ~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 544 (827)
+.|++.++ +.| |-..|-.|.++|.-.+...-|+-+|+++.+..+.....|.+|...|.+.++.++|++.|......|
T Consensus 385 ~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999998 555 566999999999999999999999999999777666799999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHH--HHHHHHHHHHhcCCHHHHHHHH
Q 003353 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVES----AAKVDLV--LYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 545 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~pd~~--t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
- .+...+..|.+.|.+.++.++|...|++.++. |...|.. ...=|...+.+++++++|....
T Consensus 463 d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 463 D-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred c-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3 36678889999999999999999999988762 4343322 2222556778888888887644
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=1.6e-10 Score=128.59 Aligned_cols=289 Identities=10% Similarity=-0.017 Sum_probs=185.0
Q ss_pred HcCChhHHHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003353 282 NKGLPYKAFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360 (827)
Q Consensus 282 ~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 360 (827)
..|+++.|.+.+.+..+. .|+. ..+-....++.+.|+.+.|.+.+.++.+..-.+.....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 468888888888777664 3443 3344455667778888888888888876532222234444577777888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH---HhcCChhHHHHHHHHH
Q 003353 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF-TMIIESH---AKSGKLDIAMSIFTDM 436 (827)
Q Consensus 361 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~li~~~---~~~g~~~~A~~~~~~m 436 (827)
..++++.+.. +-+...+..+...+.+.|++++|.+++..+.+.++. +...+ ..-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888775 346667778888888888888888888888887654 32222 1111111 2222333333444444
Q ss_pred HHcCC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH-HHHH--HHHhcCCHHHHHHHHHHHHHCC
Q 003353 437 ERAGF---LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT-ALLT--LLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 437 ~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~li~--~~~~~g~~~~A~~l~~~m~~~g 510 (827)
.+... +.+...+..+...+...|+.++|.+++++..+. .||..... .++. .....++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 44321 126777778888888888888888888888874 34443110 1222 2233466677777777777665
Q ss_pred CCch--HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 511 YSVD--VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 511 ~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
+... ....++...+.+.|++++|.+.|+........|+..++..+...+.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5444 34456677777777777777777754433445676666677777777777777777777643
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=1.2e-10 Score=128.84 Aligned_cols=285 Identities=11% Similarity=0.064 Sum_probs=188.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSA-YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~ 288 (827)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+..+.+...........+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~~-----~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-----EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 688888887777655432 22333 333344447788888888888888765433222222233567777888888
Q ss_pred HHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 003353 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF-------NIFASLVDSMGKAGRLDTSMK 361 (827)
Q Consensus 289 A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~ 361 (827)
|.+.++++.+... -+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888877642 25667778888888888888888888888877643222 123333333334445555556
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 003353 362 VYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441 (827)
Q Consensus 362 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 441 (827)
+++.+.+. .+.+......+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+...
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66555432 1346667777778888888888888888777764 3343211 23333455777888888877776543
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 442 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
. |...+.++...+.+.+++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.+++++...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 566677777888888888888888888877 567877777777788888888888887776654
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=5.4e-09 Score=109.07 Aligned_cols=426 Identities=11% Similarity=0.073 Sum_probs=319.7
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
..++...|..+|+.++..+ ..+...|-.-+..=.+++.+..|..+++..+..- |.-...|-..+.+--..|++.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l----PRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL----PRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc----chHHHHHHHHHHHHHHhcccH
Confidence 5567778999999999875 4677788888999999999999999999999875 666678888888888999999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
-|.++|++-.+- .|+..+|++.|..=.+-+..+.|..+|++..- +.|++.+|--..+-=.+.|+...|.++|+.+.
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999998764 69999999999999999999999999999987 56999999999998899999999999999987
Q ss_pred Hc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHH
Q 003353 333 ER-NF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS--APMYVSLIESYAKAGKLDTALRL--------WDE 400 (827)
Q Consensus 333 ~~-g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l--------~~~ 400 (827)
+. |- ..+...+.+....=.++..++.|.-+|.-.++.- +.+ ...|......=-+-|+....... ++.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 64 10 1122344555555556778888888888777642 222 34555555444455664443332 233
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HHcCCHhHHHHHHHH
Q 003353 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS-------TYSCLLEMH---ASSGQVDSAMKLYNS 470 (827)
Q Consensus 401 m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~li~~~---~~~g~~~~A~~l~~~ 470 (827)
+...+ .-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|--+=.++ ....+++.+.++|+.
T Consensus 314 ~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 314 EVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34433 336777777788888889999999999998874 444221 121111122 356889999999999
Q ss_pred HHHCCCCC-CHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 003353 471 MTSAGLRP-GLSTYTALLTLLA----KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545 (827)
Q Consensus 471 m~~~g~~p-d~~t~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 545 (827)
.++ +-| ..+||..+--.|+ ++.++..|.+++..++...+++ ..+...|..=.+.+.++...+++++.++-+.
T Consensus 392 ~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 392 CLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 988 445 4557766655554 5788999999999888654433 3566677777788999999999999998653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 003353 546 RTNNFIVRQLFESCMKNALYESAKPLLETYVESA-AKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615 (827)
Q Consensus 546 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~ 615 (827)
. +..+|.....--...|+.+.|..+|+-.++.. .......|-+.|+-=..+|.+++|+.+++.+.....
T Consensus 469 e-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 469 E-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred H-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 3 56677766655667899999999999988764 234567888888888889999999999988765443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.1e-11 Score=134.72 Aligned_cols=281 Identities=13% Similarity=0.069 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC--CCCHHHHHHHHHHHHHcCChh-HHH
Q 003353 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC--KIDTQSYNVLMTLFLNKGLPY-KAF 290 (827)
Q Consensus 214 ~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~n~li~~~~~~g~~~-~A~ 290 (827)
.+|..+|+...... ..+..+...+..+|...+++++|+++|+.+.+..+ ..+...|.+.+--+-+.-... -|.
T Consensus 336 ~~A~~~~~klp~h~----~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 336 REALNLFEKLPSHH----YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHhhHHhc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 45555555533332 33334455555555555555555555555544321 123444444443321110000 011
Q ss_pred HHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003353 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370 (827)
Q Consensus 291 ~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 370 (827)
++.+.+ +-.+.||.++.++|.-+++.+.|++.|+++.+.+ +-...+|+.+..-+.....+|.|...|+..+...
T Consensus 412 ~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 412 DLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 111111 1134455555555555555555555555555433 2234455555555555555555555555544221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 003353 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSC 450 (827)
Q Consensus 371 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 450 (827)
..+-.+|--+.-.|.|.++++.|+-.|++..+-+.. +.+....+...+.+.|+.|+|++++++......+ |+..---
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 111222333444455555555555555554443322 3344444444444555555555555554433222 2222222
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 451 LLEMHASSGQVDSAMKLYNSMTSAGLRPGLS-TYTALLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 451 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
.+..+...+++++|+..++++.+ +.|+.. .+..+...|-+.|+.+.|+.-|.-+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 33334444444555555544444 333332 3333333444444444444444444443
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=3.6e-10 Score=125.12 Aligned_cols=284 Identities=11% Similarity=-0.004 Sum_probs=194.9
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHH
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIF--ASLVDSMGKAGRLDTSM 360 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~ 360 (827)
.|++++|.+......+..-.| ...|.....+..+.|+++.|.+.+.++.+.. |+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 588888887777655532111 2233333444577888888888888887643 443322 23366777888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhHHHHHH
Q 003353 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF-------GLFTMIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 361 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~li~~~~~~g~~~~A~~~~ 433 (827)
..++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888765 446677788888888888888888888888887654322 12233333333444455555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 434 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
+.+.+. .+.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+..+..
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 555432 2346777788888888888888888888888773 445422 12334445588888888888888776665
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 514 DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 514 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
......+...+.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777788888888888888888888853 57777777788888888888888888887644
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=3.4e-13 Score=142.49 Aligned_cols=261 Identities=16% Similarity=0.190 Sum_probs=77.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDS-SKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~ 280 (827)
.+...+.+.|++++|++++++..... . +.+...|..+.......+++++|.+.++++...+.. +...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~---~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAP---PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccc-ccccccccccc-
Confidence 33555566666666666664332221 1 444455555555555666666666666666654433 44455555555
Q ss_pred HHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHH
Q 003353 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTS 359 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A 359 (827)
...+++++|.+++.+.-+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45566666666665544332 344455556666666666666666666655322 234555566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 360 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
++.+++..+.. +.|....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|...|++..+.
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 66666666543 2235556666666666666666666666555543 223344556666666666666666666666553
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 003353 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472 (827)
Q Consensus 440 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 472 (827)
.. .|......+.+++.+.|+.++|.++..+..
T Consensus 244 ~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 244 NP-DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ST-T-HHHHHHHHHHHT----------------
T ss_pred cc-cccccccccccccccccccccccccccccc
Confidence 22 255556666666666666666666665543
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.6e-09 Score=111.38 Aligned_cols=360 Identities=11% Similarity=0.058 Sum_probs=250.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH-HHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT-QSY 273 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~ 273 (827)
.|...+......+.+.|..+.|.+.|...+..- |-.-.+|..|..... +.+.+.. +...++..+. ..=
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit---~~e~~~~----l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELIT---DIEILSI----LVVGLPSDMHWMKK 230 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhc---hHHHHHH----HHhcCcccchHHHH
Confidence 445555556666778899999999999988765 555555655544433 2232222 2221111111 111
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHH
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF--RPSFNIFASLVDSMG 351 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~ 351 (827)
-.+..++....+.+++++-.+.....|.+-+...-+....+.-...++++|..+|+++.+.+. -.|..+|+.++-.--
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 234556666678888888888888888775655555555566678899999999999988751 135677777664332
Q ss_pred hcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003353 352 KAGRLDT-SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430 (827)
Q Consensus 352 ~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~ 430 (827)
...++.- |..++ .+- +--..|...+.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.
T Consensus 311 ~~skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhHHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 2222211 11111 111 223456777888888889999999999999887544 5677888888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 431 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
+-++...+-... |-..|-.|.++|.-.+...-|+-.|++... ++| |...|.+|..+|.+.++.++|++.|......
T Consensus 385 ~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 385 ESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999999886543 888999999999999999999999999988 566 5679999999999999999999999999987
Q ss_pred CCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh----CCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 510 GYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS----SGIRTNNF--IVRQLFESCMKNALYESAKPLLET 574 (827)
Q Consensus 510 g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~ 574 (827)
|-.....+..|...|-+.++.++|...|++-++ .|...+.. ...-|..-+.+.+++++|......
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 766566888999999999999999999987765 23332222 111233345567777777654433
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=2.5e-10 Score=127.14 Aligned_cols=299 Identities=8% Similarity=-0.023 Sum_probs=189.8
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 200 YVMLFDVL--NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 200 ~~~li~~l--~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
+..+.+++ ...|+++.|.+.+.+..+.. +.....+-....++.+.|+.+.|.+.+.+..+..+.++....-...
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~----~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA----AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 33344444 46888999999888876654 4445555566777888889999999988887654333333444456
Q ss_pred HHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---Hhc
Q 003353 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA-SLVDSM---GKA 353 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~li~~~---~~~ 353 (827)
..+...|++++|.+.++++.+... -+...+..+...+.+.|++++|.+.+..+.+.++. +...+. ....++ ...
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 777788889999999888888652 26667888888888899999999988888888643 333231 111111 222
Q ss_pred CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHH--HHhcCChh
Q 003353 354 GRLDTSMKVYMEMQGCGH---RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF-TMIIES--HAKSGKLD 427 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~li~~--~~~~g~~~ 427 (827)
+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+... |.... ..++.. ....++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChH
Confidence 223333334444443321 13667777788888888888888888888877543 32210 012222 23345666
Q ss_pred HHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 428 IAMSIFTDMERAGFLPTP--STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLE 505 (827)
Q Consensus 428 ~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~ 505 (827)
.+.+.++...+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677777666654211 33 445567777777777777777777433322467777777777777777777777777776
Q ss_pred HH
Q 003353 506 MK 507 (827)
Q Consensus 506 m~ 507 (827)
..
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 54
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=4.6e-13 Score=141.45 Aligned_cols=259 Identities=15% Similarity=0.170 Sum_probs=61.1
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
..++...++++.|+++++........+.+...|..+.......+++++|.+.++++...+ +.+...+..++.. ..
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~----~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD----KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccc-cc
Confidence 333344455555555553322211002233333333344444455555555555554443 3334444444444 34
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCC-ccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-CSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
.+++++|.+++....+.. ++...+..++..+.+.++++++.+++++..... .+.+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555544433321 233344444444555555555555555443221 22334444444445555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.+++..+.. +.|....+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+..|++..+...
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 555555443 2234444445555555555555444444444322 22333444445555555555555555555444321
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 407 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
.|..+...+.+++...|+.++|.++.++.
T Consensus 246 -~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 -DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -T-HHHHHHHHHHHT---------------
T ss_pred -ccccccccccccccccccccccccccccc
Confidence 14444444555555555555555544443
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=3.4e-11 Score=131.06 Aligned_cols=288 Identities=11% Similarity=0.055 Sum_probs=200.5
Q ss_pred ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 285 LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN--FRPSFNIFASLVDSMGKAGRLDTSMKV 362 (827)
Q Consensus 285 ~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~~ 362 (827)
+..+|+..|...... +.-+......+.++|...+++++|.++|+.+.+.. ..-+..+|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 457788888774443 33234556667778888888888888888887653 113456677766544321 12222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 003353 363 Y-MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441 (827)
Q Consensus 363 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 441 (827)
+ +.+.+.. +-...+|.++.++|.-.++.+.|++.|++..+.... ...+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 2222222 345678888888888888888888888888775322 567788777777788888888888887776421
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHH
Q 003353 442 LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDV 520 (827)
Q Consensus 442 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~l 520 (827)
. +-..|..+...|.+.++++.|+-.|+...+ +.|. .+....+...+.+.|+.|+|+++++++...+++....-...
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 1 233444566778888888888888888887 5564 44555566677788888888888888888777777666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003353 521 LMVYIKDGSVDHALRWLRFMGSSGIRTNN-FIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584 (827)
Q Consensus 521 i~~y~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 584 (827)
+..+...+++++|+..++++.+ +.|+. .++..+...|.+.|+.+.|+.-|.-+.+.++++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 7777788888888888888875 45554 45666667788888888888888888887777554
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.8e-10 Score=119.14 Aligned_cols=399 Identities=13% Similarity=0.031 Sum_probs=241.8
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPG-DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~-~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (827)
..+.+++|+++|.|+... .|+ +.-|.....+|...|++++..+--.+.++.. |.-+.++..-..++-..|++
T Consensus 127 ~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~----P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN----PDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC----cHHHHHHHHHHHHHHhhccH
Confidence 557899999999999996 466 7888889999999999999999999998887 77788888899999999999
Q ss_pred HHHHHHHHHh-HhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh-CC--ccCCHHHHHHHHHHHHHc--------C
Q 003353 252 EMSYCCFKKV-LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK-GE--CSLDGSTYELMIPSLAKS--------G 319 (827)
Q Consensus 252 ~~A~~~~~~m-~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~-~g--~~pd~~t~~~li~~~~~~--------g 319 (827)
++|..=..-. +-.|+. |..+--.+=+.+ -..|....++-.+ ++ +-|......+....+-.. +
T Consensus 200 ~eal~D~tv~ci~~~F~-n~s~~~~~eR~L-----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQ-NASIEPMAERVL-----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HHHHHhhhHHHHhhhcc-cchhHHHHHHHH-----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 8885322111 111111 111111111111 1112222222222 22 334544444444333110 0
Q ss_pred C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC---C------HHHHHHHH
Q 003353 320 R-----LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG---CGHRP---S------APMYVSLI 382 (827)
Q Consensus 320 ~-----~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p---~------~~~~~~li 382 (827)
+ ..++.+.+..-.. . .+..|...+.+-.. ..... | ..+.....
T Consensus 274 ~ksDa~l~~~l~~l~~~~~-------e-------------~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLE-------E-------------GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ccchhhHHHHHHHHHhhCc-------h-------------hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 0 1111111111110 1 12222222221110 00000 1 11222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 003353 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462 (827)
Q Consensus 383 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 462 (827)
..+.-.|+.-.|.+-|+..+.....++. .|--+..+|....+.++.++.|++..+.+.. +..+|..-...+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 2334467778888888888776554433 2666666788888888888888888776544 5566766777777778888
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 463 SAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 463 ~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
+|..=|++.++ +.|. ...|..+.-+..+.+++++++..|++.++.-+.....++-....+..++++++|.+.|+...
T Consensus 412 ~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 88888888877 4554 34666666666678888888888888888766666677777777888888888888888877
Q ss_pred hCCCC-----CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 542 SSGIR-----TN--NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 542 ~~~~~-----p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l 610 (827)
+.... .+ ..+-..++. +.-.+++..|++++++..+.+++ ....|.+|...-.+.|+.++|.++|+..
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 53211 12 112222221 11237888888888888887777 5567778888888888888888888763
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.3e-09 Score=108.94 Aligned_cols=286 Identities=12% Similarity=0.130 Sum_probs=190.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH------HHHHHHHHHHHHc
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT------QSYNVLMTLFLNK 283 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~n~li~~~~~~ 283 (827)
+.+.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|..+.|+++.+.+.++ ||. ...-.|..-|...
T Consensus 48 s~Q~dKAvdlF~e~l~~d----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hcCcchHHHHHHHHHhcC----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHh
Confidence 457788888888888765 677777788888888888888888888877764 442 2344556667778
Q ss_pred CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 003353 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF----NIFASLVDSMGKAGRLDTS 359 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A 359 (827)
|-++.|.++|..+.+.|.. -......|+..|-...+|++|.++-+++.+.+-.+.. ..|.-|...+....+.+.|
T Consensus 121 Gl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 8888888888888765322 3456677788888888888888888877776533321 2344555555566778888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 360 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
..++.+..+.+ +..+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++....+.++.+.
T Consensus 200 ~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88888887664 33444555566777788888888888888887765545566777888888888888888888877765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 003353 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK---RKLVDVAAKILLEMKT 508 (827)
Q Consensus 440 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~---~g~~~~A~~l~~~m~~ 508 (827)
...++ .-..+-..-....-.+.|...+.+-+. -+|+...+..+|..-.. -|...+...+++.|+.
T Consensus 279 ~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 279 NTGAD--AELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333 223333333334445555555544444 26888888888775432 3344555555555554
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.9e-09 Score=111.38 Aligned_cols=454 Identities=11% Similarity=0.051 Sum_probs=287.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC----HHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID----TQSYN 274 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~n 274 (827)
+..+...|..+....+|+..++-+++... -|+.- .--.+...+.+...+.+|++.|+-..+.-+..+ +...|
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkm---f~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKM---FPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccc---cCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 33455666677888999999998887653 34332 223456678888899999999987776533333 23455
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------CCHHH
Q 003353 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR------------PSFNI 342 (827)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------p~~~t 342 (827)
.+.-.+.+.|+++.|+..|+...+. .||..+--.|+-++.--|+-++..+.|.+|+..... |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 5556678899999999999998774 488887666666777789999999999999865322 23333
Q ss_pred HHHHH-----HHHHhcCCHHHHHHHH---HHHHhCCCCCCHHH---H----------H--------HHHHHHHHcCCHHH
Q 003353 343 FASLV-----DSMGKAGRLDTSMKVY---MEMQGCGHRPSAPM---Y----------V--------SLIESYAKAGKLDT 393 (827)
Q Consensus 343 ~~~li-----~~~~~~g~~~~A~~~~---~~m~~~g~~p~~~~---~----------~--------~li~~~~~~g~~~~ 393 (827)
.+..| .-.-+.+ -..|++.. .+++.--+.||-.. | . .-..-|.++|+++.
T Consensus 359 l~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 32222 1111111 11222222 22222122232110 0 0 11234678999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAK--SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 471 (827)
|+++++-..+..-+.-...-|.|-..+.- -.++..|.+.-+...... .-+......-.+.-..+|++++|.+.|++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99999998876433223333333333322 346777777766655321 113333333333445689999999999999
Q ss_pred HHCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 003353 472 TSAGLRPGLSTYTALL---TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548 (827)
Q Consensus 472 ~~~g~~pd~~t~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~ 548 (827)
+.. |...-.+|. -.+...|++++|++.|-++...-.........+...|....+...|++++-+.... ++.|
T Consensus 517 l~n----dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~d 591 (840)
T KOG2003|consen 517 LNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPND 591 (840)
T ss_pred HcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCC
Confidence 874 333333332 25678999999999998877643334457778888999999999999999777632 4456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchh--HHHhhhcc
Q 003353 549 NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAH--AFLCGLFT 626 (827)
Q Consensus 549 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~--~~~~~l~~ 626 (827)
+.+.+.|...|-+.|+-..|.+..-.--+- +.-|..|..=|...|...+-.+++...|+......|... ..+...+.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 889999999999999999998877654332 444777777777788888889999999998776655443 22333333
Q ss_pred CCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCCh
Q 003353 627 GPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQI 672 (827)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~ 672 (827)
...+..|.+.+..+...++ .+.+.++.- -|+.+....|..
T Consensus 671 rrsgnyqka~d~yk~~hrk----fpedldclk--flvri~~dlgl~ 710 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRK----FPEDLDCLK--FLVRIAGDLGLK 710 (840)
T ss_pred HhcccHHHHHHHHHHHHHh----CccchHHHH--HHHHHhccccch
Confidence 3334445454444443332 333333332 477777777743
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2e-09 Score=107.52 Aligned_cols=293 Identities=15% Similarity=0.147 Sum_probs=222.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (827)
..+.+.|++.|-.+.+.+ +.+.++--++.+.+-+.|..|.|+++++.+.....-....-..+...|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 467888999999999865 455667778999999999999999999999876421111123456678888999999999
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHH----HHHHHHHHHHHcCCHHHHHHHHH
Q 003353 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS----TYELMIPSLAKSGRLDAAIKLFQ 329 (827)
Q Consensus 254 A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~li~~~~~~g~~~~A~~~~~ 329 (827)
|+.+|..+.+.+. .-......|+..|-+..+|++|+++-+++...+-.+..+ -|.-+...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999987543 245677889999999999999999999998876544332 45566666677789999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003353 330 EMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409 (827)
Q Consensus 330 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 409 (827)
+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+....++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 999876 4445555667888999999999999999999876444456788899999999999999999999988654444
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHHC
Q 003353 410 FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS---GQVDSAMKLYNSMTSA 474 (827)
Q Consensus 410 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~l~~~m~~~ 474 (827)
. -..+-+.-....-.+.|...+.+-..+ .|+...+..+|+.-... |...+-+.+++.|...
T Consensus 284 ~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 A--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred H--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3 333334333444455666655554443 48999999999876543 3455666677777653
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=7.4e-09 Score=106.79 Aligned_cols=286 Identities=12% Similarity=0.035 Sum_probs=222.2
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 362 (827)
.|+|.+|+++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.++.+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68899999998887776544 34566666777788899999999999988764356677777888888889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHH
Q 003353 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNF-------GLFTMIIESHAKSGKLDIAMSIFTD 435 (827)
Q Consensus 363 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~li~~~~~~g~~~~A~~~~~~ 435 (827)
.+++.+.+ +.+.........+|.+.|++.+...++..|.+.|.-.|. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 98888876 456778888899999999999999999999998876553 4566666666666666665556666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH
Q 003353 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515 (827)
Q Consensus 436 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 515 (827)
...+ .+-++..-.+++.-+.++|+.++|.++..+..+++..|+.. ..-.+.+-++.+.-++..++-.+..+....
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5542 33466677788888899999999999999998887766622 223566778888888888877776555446
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
.+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+.++|.+..++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 788888899999999999999997764 568888999999999999999999988887654
No 51
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=3.9e-08 Score=106.95 Aligned_cols=436 Identities=15% Similarity=0.110 Sum_probs=289.6
Q ss_pred HHHhhhCCCCCCHH-HHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 003353 152 ETQLDKLQFVPKMV-HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN 230 (827)
Q Consensus 152 ~~~l~~~~~~p~~~-~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~ 230 (827)
...|.+.+-.++.. .-+-.|+++|+-++|....+...+.+ ..+..+|..+.-.+-..+++++|++.|...+..+
T Consensus 31 ~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--- 105 (700)
T KOG1156|consen 31 KQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--- 105 (700)
T ss_pred HHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC---
Confidence 33444444444333 34667889999999999999988865 5678899999988888999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCC-ccCCHHHHH
Q 003353 231 GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE-CSLDGSTYE 309 (827)
Q Consensus 231 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~ 309 (827)
+.|...|.-+.-.-++.|+++-....-..+.+..+. ....|..+..++.-.|++..|..+.++..+.. -.|+...|.
T Consensus 106 -~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 106 -KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred -CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 899999999888888999999888888888775443 66789999999999999999999999997764 246666654
Q ss_pred HHHH------HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-H
Q 003353 310 LMIP------SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL-I 382 (827)
Q Consensus 310 ~li~------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i 382 (827)
-... ...+.|..++|.+.+..-... +......-.+-.+.+.+.+++++|..++..++.. .||..-|.-. .
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHH
Confidence 4332 346678888888777654432 2222233345567888999999999999999986 4676665544 4
Q ss_pred HHHHHcCCHHHHH-HHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003353 383 ESYAKAGKLDTAL-RLWDEMRIAGF---RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458 (827)
Q Consensus 383 ~~~~~~g~~~~A~-~l~~~m~~~g~---~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 458 (827)
.++.+-.+.-+++ .+|....+.-. .|-....+. .....-.+..-+++..+.++|+++ ++..+...|-.-
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p 333 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDP 333 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhch
Confidence 4554444544555 66666544311 111111111 111222333445566666777654 233333333222
Q ss_pred CCHhHHHHHHHHHH----HCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHH
Q 003353 459 GQVDSAMKLYNSMT----SAG----------LRPGLS--TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522 (827)
Q Consensus 459 g~~~~A~~l~~~m~----~~g----------~~pd~~--t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~ 522 (827)
...+-..++.-.+. ..| -.|... |+-.++..+-+.|+++.|..+++.++.+.+.....|..-..
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaR 413 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKAR 413 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 21111111111111 111 145554 44456778889999999999999999865443345556667
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----------HH
Q 003353 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV----------LA 592 (827)
Q Consensus 523 ~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l----------l~ 592 (827)
++...|.+++|..++++..+.+. +|..+=..-..-..++.+.++|.++.....+.|. +.+-.-+- ..
T Consensus 414 I~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ 490 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGE 490 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhH
Confidence 89999999999999999987663 3444333334445688999999999999887775 33322222 24
Q ss_pred HHHhcCCHHHHHHHH
Q 003353 593 HLVRCQDEQNERHLM 607 (827)
Q Consensus 593 a~~~~g~~~~a~~l~ 607 (827)
+|.+.|++..|.+-|
T Consensus 491 ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 491 AYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777776665543
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.6e-08 Score=108.36 Aligned_cols=454 Identities=14% Similarity=0.036 Sum_probs=304.8
Q ss_pred CCccHHHHhhhCCCCC-CHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH--
Q 003353 147 WGPELETQLDKLQFVP-KMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM-- 223 (827)
Q Consensus 147 ~~~~~~~~l~~~~~~p-~~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m-- 223 (827)
.+..+.+.+..++..| |.+-+.+++...++++.|..+...-.- ...|..+.......+.+..++++|..++...
T Consensus 34 ~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~ 110 (611)
T KOG1173|consen 34 TALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHV 110 (611)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3344555555555555 345578889888888877666553322 2456777788888899999999999998832
Q ss_pred --HHcCC--CC----CCCCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC
Q 003353 224 --VHDSS--KN----GISLF-----------SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284 (827)
Q Consensus 224 --~~~~~--~~----~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g 284 (827)
..... ++ ...+. ..+-.-...|......++|...|.+... .|+..+.++...-..
T Consensus 111 ~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~-- 184 (611)
T KOG1173|consen 111 ETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSA-- 184 (611)
T ss_pred hhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHH--
Confidence 11100 00 00000 0111112234445567777777777665 455555554433221
Q ss_pred ChhHHHHHHHHhHhCCc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003353 285 LPYKAFEIYESMEKGEC----SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360 (827)
Q Consensus 285 ~~~~A~~~~~~m~~~g~----~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 360 (827)
..-.+.+.|+.+..... .-+......+.....-...-++....-.+..-.+..-+........+-+...+++.+..
T Consensus 185 ~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ 264 (611)
T KOG1173|consen 185 HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECL 264 (611)
T ss_pred HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHH
Confidence 22233333333332111 11222222222221111111111111111111233455566667777888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003353 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440 (827)
Q Consensus 361 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 440 (827)
++.++..+.. ++....+..-|.++...|+..+-..+=.+|.+.-+ -...+|-++.--|...|+..+|++.|.+....+
T Consensus 265 kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~YYl~i~k~seARry~SKat~lD 342 (611)
T KOG1173|consen 265 KITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCYYLMIGKYSEARRYFSKATTLD 342 (611)
T ss_pred HHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 9999998765 56677777778899999998888888888887643 357889888888888999999999999876542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHH
Q 003353 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL-STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519 (827)
Q Consensus 441 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~ 519 (827)
.. =...|-.....|+-.|..++|+..|....+. -|.. .-+--+.--|.+.++++.|.+.|.++....+......+-
T Consensus 343 ~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E 419 (611)
T KOG1173|consen 343 PT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE 419 (611)
T ss_pred cc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence 22 2457888999999999999999999888762 2221 112233446788999999999999999876666667778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003353 520 VLMVYIKDGSVDHALRWLRFMGSS------GIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593 (827)
Q Consensus 520 li~~y~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 593 (827)
+.......+.+.+|..+|+..++. ....|..+++.|..+|.+.+++++|+..+++.+...++ |..+++++.-.
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~i 498 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYI 498 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHH
Confidence 888888889999999999988731 12247889999999999999999999999999988777 89999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhccC
Q 003353 594 LVRCQDEQNERHLMAILSATKH 615 (827)
Q Consensus 594 ~~~~g~~~~a~~l~~~l~~~~~ 615 (827)
|...|+.+.|...+.+....+|
T Consensus 499 y~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHhcChHHHHHHHHHHHhcCC
Confidence 9999999999999988776655
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=1.9e-08 Score=103.76 Aligned_cols=295 Identities=13% Similarity=0.093 Sum_probs=207.9
Q ss_pred HHHHHHH--hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 202 MLFDVLN--ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 202 ~li~~l~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
.+..++. -.|+|..|+++..+-.+.+ +.....|..-+.+--..|+.+.|-..+.+..+....++...+-+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~----e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHG----EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcC----cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 3444444 3788899988888876665 555667777777778888888888888888876445667777777788
Q ss_pred HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHh
Q 003353 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF-------NIFASLVDSMGK 352 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~ 352 (827)
....|+++.|..-.+++.+.+.. +........++|.+.|++.+...++..+.+.|.-.+. .+|..+++-...
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888888776533 6677788888888889999988888888888754443 366666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003353 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
.+..+.-...+++.... .+.+...-.+++.-+.+.|+.++|.++..+..+.+..|... . .-.+.+-++.+.-.+.
T Consensus 242 ~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~-~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---R-LIPRLRPGDPEPLIKA 316 (400)
T ss_pred cccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---H-HHhhcCCCCchHHHHH
Confidence 66666555566555433 23445555666777778888888888888877776655411 1 1233455666555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 433 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
.+.-.+.. +-++..+.+|...|.+++.+.+|.+.|+...+ ..|+..+|+.+..++.+.|+.++|.++.++....
T Consensus 317 ~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 317 AEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55544332 12446677777888888888888888887766 5677888888888888888888888887776643
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.5e-08 Score=106.52 Aligned_cols=417 Identities=11% Similarity=0.034 Sum_probs=225.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+-...+-+.++|.+++|++.|.+.+... +..+.-|.....+|...|+|++..+--.+..+..+. -+..++.-..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~----p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC----PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC----CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHH
Confidence 34456677889999999999999998874 333788889999999999999998888877775432 3445666666
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHH-cC--CCCCHHHHHHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ--------EMKE-RN--FRPSFNIFASLV 347 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~--------~m~~-~g--~~p~~~t~~~li 347 (827)
++-+.|++++|+.= .|..+++.++....-.-.+.+++. +-.+ .+ +-|+.....+..
T Consensus 192 A~E~lg~~~eal~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 192 AHEQLGKFDEALFD-------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred HHHhhccHHHHHHh-------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 77777777766432 233333333333222222222222 2122 22 223333322222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHc---CCCCC---------HHHHH
Q 003353 348 DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK-AGKLDTALRLWDEMRIA---GFRPN---------FGLFT 414 (827)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~---g~~pd---------~~t~~ 414 (827)
..+-.. +. ..+...+-+.|...-..+=..+.. ...+..|...+.+-... ....+ ..+..
T Consensus 259 ~sF~~~--~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 259 GSFHAD--PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred hhcccc--cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 221100 00 000000000111111111111111 01233333333222110 00011 11122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 003353 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKR 493 (827)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~ 493 (827)
....-+.-.|+.-.|.+-|+..++....++ ..|--+..+|.+..+.++....|+...+ +.| |..+|..-.+.+.-.
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHH
Confidence 222223446777777777777776544322 2265666677777777777777777776 333 345666666666667
Q ss_pred CCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003353 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573 (827)
Q Consensus 494 g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 573 (827)
+++++|..-|++.+...+.....+-.+.-+..+.++++++...|++..++ ++.-...|+.....+...++++.|.+.|+
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 77777777777777755444445555666666777777777777777653 33335566666677777777777777777
Q ss_pred HHHHCCCCCCHH-----HH--HHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHhhcc
Q 003353 574 TYVESAAKVDLV-----LY--TSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGI 646 (827)
Q Consensus 574 ~m~~~g~~pd~~-----t~--~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 646 (827)
..++..+.-+.+ ++ -+++-.-. .+++..|..++++..
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~----------------------------------- 530 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAI----------------------------------- 530 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHH-----------------------------------
Confidence 776643331111 11 11111111 133333333332222
Q ss_pred ccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003353 647 DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYE 684 (827)
Q Consensus 647 ~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~ 684 (827)
+.+|.++ ..|-+|..+....|++++|.++|+++..
T Consensus 531 --e~Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 531 --ELDPKCE-QAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred --ccCchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2333333 3356899999999999999999988743
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=4.4e-09 Score=121.70 Aligned_cols=269 Identities=13% Similarity=0.053 Sum_probs=161.5
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH---------cCChhHHHHHHHHhH
Q 003353 232 ISLFSAYNRVIQYLAK-----ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN---------KGLPYKAFEIYESME 297 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~---------~g~~~~A~~~~~~m~ 297 (827)
+.+...|...+.+-.. .+.+++|...|++..+..+. +...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455555555554322 13456777777777776543 45566655554432 233677888887777
Q ss_pred hCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003353 298 KGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM 377 (827)
Q Consensus 298 ~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 377 (827)
+... -+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++..+.... +...
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 6532 256667777777777788888888888877765 455667777777788888888888888887765422 2223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 457 (827)
+..++..+...|++++|+..+++..+....-+...+..+..++...|+.++|...+.++..... .+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence 3334445566777888888887776543222344556666777778888888888777654311 133444555556666
Q ss_pred cCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003353 458 SGQVDSAMKLYNSMTSA-GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 458 ~g~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 510 (827)
.| ++|...++.+.+. ...+....+..+ .+.-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 66 4666666666542 122322222222 34445555555544 6666543
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=8e-07 Score=96.56 Aligned_cols=494 Identities=14% Similarity=0.155 Sum_probs=310.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
..+.+-..++.......|+.+++.-+...-...|...+......+-.+-+..++++.++.. +..-+--|..++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-------P~~~eeyie~L~ 180 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-------PEAREEYIEYLA 180 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-------HHHHHHHHHHHH
Confidence 4566667777777888888888864333334588888888888999999999999998664 444667788899
Q ss_pred HcCCHHHHHHHHHHhHhCC------CCCCHHHHHHHHHHHHHcCChh---HHHHHHHHhHhCCccCCH--HHHHHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSD------CKIDTQSYNVLMTLFLNKGLPY---KAFEIYESMEKGECSLDG--STYELMIPSL 315 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g------~~p~~~~~n~li~~~~~~g~~~---~A~~~~~~m~~~g~~pd~--~t~~~li~~~ 315 (827)
+.+++++|.+.+....... .+-+-..|+-+-+..+++-+.- ...++++.+... -+|. ..|++|.+-|
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY 258 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence 9999999999988876421 1235567777777766653322 233445555432 2454 4789999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhCCC--
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA----------------G------RLDTSMKVYMEMQGCGH-- 371 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~----------------g------~~~~A~~~~~~m~~~g~-- 371 (827)
.+.|.++.|..+|++....- .++.-|+.+-++|+.- | +++-.+.-|+.+.....
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 99999999999999887653 2333344444554431 1 12233334444332210
Q ss_pred ---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 372 ---------RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP------NFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 372 ---------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------d~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
+.++..|..-+.. ..|+..+-...+.+..+. +.| -...|..+.+.|-..|+++.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 2244455544433 356777778888887764 222 2456788899999999999999999998
Q ss_pred HHcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC----------CCC-------CHHHHHHHHHHHHhcCCH
Q 003353 437 ERAGFLPT---PSTYSCLLEMHASSGQVDSAMKLYNSMTSAG----------LRP-------GLSTYTALLTLLAKRKLV 496 (827)
Q Consensus 437 ~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g----------~~p-------d~~t~~~li~~~~~~g~~ 496 (827)
.+-..+-- ..+|..-..+=.+..+++.|+++.++....- -.| ....|...++.-...|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 87544311 3456555666677888999999988776411 111 223455566666678899
Q ss_pred HHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHH---cCCHHHHHHHH
Q 003353 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF-IVRQLFESCMK---NALYESAKPLL 572 (827)
Q Consensus 497 ~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~---~g~~~~A~~~~ 572 (827)
+....+++.+++..+-.....-+....+-...-++++.+++++-+..=-.|+.. +|+..+.-+.+ .-..+.|..+|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999998877655443334444556667889999888665433334433 56655555443 23689999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCchhHH-Hh-------hhccCCccccchhHHHHH
Q 003353 573 ETYVESAAKVDLVLYTSVLAHLVR----CQDEQNERHLMAILSATKHKAHAF-LC-------GLFTGPEQRKQPVLSFVR 640 (827)
Q Consensus 573 ~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~l~~~l~~~~~~~~~~-~~-------~l~~~~~~~~~~~~~~~~ 640 (827)
++.++ |..|...-+--|+ |++ .|-...|..++++....-+....+ +. ....|... ..+..+.+.
T Consensus 574 EqaL~-~Cpp~~aKtiyLl--YA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~-TR~iYekaI 649 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLL--YAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPR-TREIYEKAI 649 (835)
T ss_pred HHHHh-cCCHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHH
Confidence 99999 5666554333333 332 355666777777765544443322 11 11112111 112222222
Q ss_pred HHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 003353 641 EFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYEN 685 (827)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~ 685 (827)
+ .+ +.+-...++=-..++=++.|.+++|+.++....+-
T Consensus 650 e---~L----p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 650 E---SL----PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred H---hC----ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 2 22 11112233334457788999999999998766443
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=3e-09 Score=108.36 Aligned_cols=201 Identities=15% Similarity=0.099 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
....+..+...+...|++++|.+.+++..+.. +.+..++..+...|...|++++|.+.+++..+..+. +...+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~ 104 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD----PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 34567777777888888888888888877665 666777777788888888888888888877765543 5566777
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCcc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECS-LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 354 (827)
+...+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 777777778888888877777654211 223455556666667777777777777766654 334455666666666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 355 RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 355 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
++++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus 184 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777666666542 33445555556666666666666666655543
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=2.2e-09 Score=124.07 Aligned_cols=217 Identities=12% Similarity=-0.022 Sum_probs=130.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN---------ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 176 ~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~---------~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
+.++|+.+|+.+.+.+ +.+...|..+..++. ..+++++|...+++.++.. |.+..++..+...+.
T Consensus 276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld----P~~~~a~~~lg~~~~ 349 (553)
T PRK12370 276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD----HNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHH
Confidence 3456777777777764 334555555554433 2234677777777777766 667777777777777
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
..|++++|...|++..+.++. +...|..+...+...|++++|+..+++..+.... +...+..++..+...|++++|.+
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHH
Confidence 777777777777777766543 5566666777777777777777777777664322 12222333444555667777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
.++++.+...+.+...+..+..++...|++++|...+.++.... ..+....+.+...|+..| ++|...++.+.+
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 77776654322234445566666667777777777776655431 112334444445555555 355555555443
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=9.1e-09 Score=104.79 Aligned_cols=200 Identities=15% Similarity=0.117 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHH
Q 003353 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313 (827)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 313 (827)
....+..+...|.+.|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 3455666666666677777777777666654322 455666666666666666666666666655432 23445555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 314 SLAKSGRLDAAIKLFQEMKERNF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392 (827)
Q Consensus 314 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 392 (827)
.+...|++++|.+.++++.+... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 66666666666666666654321 1223344445555555666666666665555432 223444555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 393 TALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437 (827)
Q Consensus 393 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 437 (827)
+|...+++..+. ...+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555543 12233444444455555555555555544443
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=6.7e-06 Score=89.63 Aligned_cols=497 Identities=13% Similarity=0.166 Sum_probs=297.4
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCCCCCHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS---KNGISLFSAYNRVIQY 244 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~---~~~~~~~~~~~~li~~ 244 (827)
+.-+...+-++-++.++++..+- ++..-+--|..+++.++.++|.+.+...+.... +.++.+...|.-+-+.
T Consensus 145 l~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 145 LKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 33344445556677777766663 333456667888999999999999998876432 1236677788888888
Q ss_pred HHHcCCHHHH---HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc---
Q 003353 245 LAKADKLEMS---YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS--- 318 (827)
Q Consensus 245 ~~~~g~~~~A---~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~--- 318 (827)
.++.-+.-.. ..+++.+...-...=...|++|.+-|.+.|.+++|.++|++.++.- .++.-|+.+.++|+.-
T Consensus 220 is~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 220 ISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEES 297 (835)
T ss_pred HHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHH
Confidence 7776554333 3334444332111223679999999999999999999999987742 2344455555555321
Q ss_pred -------------C------CHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 319 -------------G------RLDAAIKLFQEMKERN-----------FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 319 -------------g------~~~~A~~~~~~m~~~g-----------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
| +++-...-|+.+..+. -+-++..|..-+..+ .|+..+-...|.++.+
T Consensus 298 ~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~ 375 (835)
T KOG2047|consen 298 CVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVK 375 (835)
T ss_pred HHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHH
Confidence 1 1233344444444332 123344555444433 5667777788887775
Q ss_pred CCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 369 CGHRP------SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN---FGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 369 ~g~~p------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
. +.| -...|..+...|-..|+++.|..+|++..+...+-- ..+|-.-..+-.+..+++.|.++.++....
T Consensus 376 ~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 376 T-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred c-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 3 122 234688889999999999999999999887543211 234444445555667788888888776532
Q ss_pred C----------CCC-------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 440 G----------FLP-------TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKI 502 (827)
Q Consensus 440 g----------~~p-------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l 502 (827)
. -.| +...|...++.--..|-++....+|+++++..+. ++........-+....-++++.++
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1 111 3445666677777788999999999999985543 222222223344567778999999
Q ss_pred HHHHHHCCCCchH--hHHHHHHHHHH---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 003353 503 LLEMKTMGYSVDV--SASDVLMVYIK---DGSVDHALRWLRFMGSSGIRTNNFIVRQLFES--CMKNALYESAKPLLETY 575 (827)
Q Consensus 503 ~~~m~~~g~~~~~--~~~~li~~y~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~m 575 (827)
+++-+..-..|.+ .|+..+.-+.+ .-+++.|..+|++.++ |++|...-+-.|+-+ =.+.|....|++++++.
T Consensus 534 YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 534 YERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9887776556664 56665554443 3468999999999998 777664422222111 22578899999999996
Q ss_pred HHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchh-HHHhhhccCCccccchhHHHHHHHhhcccccccc
Q 003353 576 VESAAKVD--LVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAH-AFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEE 652 (827)
Q Consensus 576 ~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (827)
.. ++++. ...|+..|.--...=....-+.++++.-..-+..+ --+|--+... +.+-+-...++..+.--..=.+|
T Consensus 613 t~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdl-EtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 613 TS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADL-ETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHH-hhhhhhHHHHHHHHHhhhhcCCC
Confidence 54 34433 33566555432222122233444444332222211 1123222211 11111122333332211112356
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHH
Q 003353 653 GAARYFVNVLLNYLVLMGQINRARCV 678 (827)
Q Consensus 653 ~~~~~~~n~Li~~l~k~G~~~~A~~v 678 (827)
....-+|++.=+.=.+-|+-+.-.+.
T Consensus 691 r~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 66778899999999999996555444
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=2.2e-06 Score=93.69 Aligned_cols=419 Identities=12% Similarity=0.118 Sum_probs=280.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (827)
.+++...+++.+.+.+.. +--.++.....-.+...|+-++|.......++.. ..+.+.|..+.-.+....++++
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d----~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND----LKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccC----cccchhHHHHHHHHhhhhhHHH
Confidence 467777888888888854 4455677777777788999999999988887765 7888999999999999999999
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333 (827)
Q Consensus 254 A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 333 (827)
|+++|......+.. |...|.-+--.-++.++++...+.-.+..+.. +-....|.....++--.|+...|..++++..+
T Consensus 94 aiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 94 AIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987754 77888877777778888888888888877652 22456788888888889999999999999987
Q ss_pred cC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 334 RN-FRPSFNIFASLV------DSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 334 ~g-~~p~~~t~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.. -.|+...+.... ....+.|..++|.+.+..-...- .-....-.+....+.+.+++++|..++..+....
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn- 249 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN- 249 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-
Confidence 65 246666554433 33456788888888776654321 1122233456677889999999999999999864
Q ss_pred CCCHHHHHHHH-HHHHhcCChhHHH-HHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHHHCCCCCCH
Q 003353 407 RPNFGLFTMII-ESHAKSGKLDIAM-SIFTDMERAGF---LPTPSTYSCLLEMHASSGQ-VDSAMKLYNSMTSAGLRPGL 480 (827)
Q Consensus 407 ~pd~~t~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~ 480 (827)
||..-|.... .++.+-.+.-++. .+|....+.-. .|--...+ .....+ .+..-+++..+.+.|+.+-
T Consensus 250 -Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-----vl~~eel~~~vdkyL~~~l~Kg~p~v- 322 (700)
T KOG1156|consen 250 -PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-----VLNGEELKEIVDKYLRPLLSKGVPSV- 322 (700)
T ss_pred -chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-----HhCcchhHHHHHHHHHHHhhcCCCch-
Confidence 6666655544 4444443444444 56666554311 11111111 111122 2333455666777776643
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC----------Cch-H--hHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 003353 481 STYTALLTLLAKRKLVDVAAKILLEMK----TMGY----------SVD-V--SASDVLMVYIKDGSVDHALRWLRFMGSS 543 (827)
Q Consensus 481 ~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~----------~~~-~--~~~~li~~y~~~g~~~~A~~~~~~m~~~ 543 (827)
+..+.+.|-.-...+-.+++.-.+. ..|. +|. . ++.-++..|-+.|+++.|...++....+
T Consensus 323 --f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 323 --FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred --hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 3333333322222221112211111 1111 222 1 3456778899999999999999998853
Q ss_pred CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 003353 544 GIRTNNF-IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK 614 (827)
Q Consensus 544 ~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~ 614 (827)
.|+.+ .|..=...+...|++++|..++++..+.+. +|...=+.-.....+.++.++|..+.......+
T Consensus 401 --TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 401 --TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred --CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 45533 444444668889999999999999987654 477666677778888999999988776655433
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=5.3e-07 Score=91.14 Aligned_cols=447 Identities=12% Similarity=0.069 Sum_probs=270.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (827)
.|+.-|+.+++....... .....+-..+..++...|++++|...+.-+.... .++...+..|.-.+.-.|.+.+|
T Consensus 36 rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~----~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD----DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred ccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC----CCCcccchhHHHHHHHHHHHHHH
Confidence 466667777776554331 1112233345577788999999999999888765 66677777787788888999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 255 ~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..+-.+..+ +.-.-..|....-+.|+-++-..+.+.+... ..---+|.+..-..-.+.+|.+++.+....
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888766543 3344444555555667666666555555432 122223444444445788999999998875
Q ss_pred CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003353 335 NFRPSFNIFASL-VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413 (827)
Q Consensus 335 g~~p~~~t~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 413 (827)
+ |+....|.- .-+|.+..-++-+.++++-..+.- +.++..-|.......+.=.-..|+.-..++.+.+-.. |
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~ 253 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y 253 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c
Confidence 4 444444443 346778888888888888776642 3455666666655555333233343344444432211 1
Q ss_pred HHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 414 TMIIESHAKS-----GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488 (827)
Q Consensus 414 ~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 488 (827)
-.+.-+++. ..-+.|.+++-.+.+. -+..--.|+--|.+.+++.+|..+.+++.- ..|-......+..
T Consensus 254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred -hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 123333333 2446777777666653 222333455568899999999998877643 3343333333332
Q ss_pred HH-----HhcCCHHHHHHHHHHHHHCCCCchH--hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 003353 489 LL-----AKRKLVDVAAKILLEMKTMGYSVDV--SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK 561 (827)
Q Consensus 489 ~~-----~~~g~~~~A~~l~~~m~~~g~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 561 (827)
+- .......-|.+.|+-.-+.+..-|. .-.++...+.-..++++.+..+.....-=..-|...+ .+.++++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence 21 1122455566666666566655552 2345566666667788888888777653333344444 46688999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHH
Q 003353 562 NALYESAKPLLETYVESAAKVDLVLYTS-VLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVR 640 (827)
Q Consensus 562 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 640 (827)
.|.+.+|.++|-+.....++ |..+|.+ |..+|.+++..+-|-.++-.+...+ .. -
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~--------------------f 461 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS---ER--------------------F 461 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch---hH--------------------H
Confidence 99999999999887665556 5556655 4578889998888766653322100 00 0
Q ss_pred HHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCc
Q 003353 641 EFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKA 691 (827)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~ 691 (827)
...-...+-+.++|++=-|.+.|+......|.|..
T Consensus 462 ----------------sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 462 ----------------SLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 01113345677788877777777777666766653
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.16 E-value=2.1e-07 Score=104.43 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 337 RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416 (827)
Q Consensus 337 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 416 (827)
.|+..+|..++++-..+|+++.|..++.+|.+.|++.+..-|-.++-+ .++...+..+++-|.+.|+.|+..|+..-
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 477788888888888888888888888888888877777666666554 77777788888888888888888888776
Q ss_pred HHHHHhcCC
Q 003353 417 IESHAKSGK 425 (827)
Q Consensus 417 i~~~~~~g~ 425 (827)
+..+.++|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 666665444
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=3.5e-07 Score=92.46 Aligned_cols=419 Identities=10% Similarity=0.045 Sum_probs=268.2
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+...-++||+++|+..+..+.... .++...+..+.....-.|.+.+|.++-.+. +.++-.-..|...--+
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka--------~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKA--------PKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHH
Confidence 445558899999999999888865 567777888888888889999999887665 3344444555566667
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHH-HHHHHcCCHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI-PSLAKSGRLDAAIK 326 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li-~~~~~~g~~~~A~~ 326 (827)
.++-++-...-+.+.+ ...---+|....-..-.+.+|++++.+....+ |+-...|.-+ -+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHH
Confidence 7777766666555543 12223334444334456899999999998753 5555555443 46678888899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA-----GKLDTALRLWDEM 401 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m 401 (827)
+++--.+. ++.+...-|.......+.=+-..|+.-..++.+.+-.. | -.+.-+++. ..-+.|++++--+
T Consensus 207 vl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L 280 (557)
T KOG3785|consen 207 VLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSL 280 (557)
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHH
Confidence 88877764 35555666666555555433334444445554433111 1 123334443 3457788888776
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHHcCCHhHHHHHHHHHHHCCC
Q 003353 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE-----MHASSGQVDSAMKLYNSMTSAGL 476 (827)
Q Consensus 402 ~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~-----~~~~~g~~~~A~~l~~~m~~~g~ 476 (827)
.+. .|. .--.|+--|.+.+++.+|..+.+++.-. .|-......++. -........-|.+.|+-.-+.+.
T Consensus 281 ~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 281 MKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred Hhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 653 232 2233555688999999999888765431 222222222221 11122235556666666555554
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH-
Q 003353 477 RPGLS-TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQ- 554 (827)
Q Consensus 477 ~pd~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~- 554 (827)
.-|.. --.++.+++.-..++++.+.++..+...-...|..-..+..+++..|++.+|.++|-.+....++ |..+|.+
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~ 433 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSM 433 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHH
Confidence 43322 23345555666678899999888888876667777778999999999999999999888755555 4555544
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhccCchhH
Q 003353 555 LFESCMKNALYESAKPLLETYVESAAKVDLVL-YTSVLAHLVRCQDEQNERHLMAILSATKHKAHA 619 (827)
Q Consensus 555 ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~ 619 (827)
|..+|.++|.++.|..++-++ +-..+..+ .-.+.+-|.+++++--|.+.|..+...+|.+..
T Consensus 434 LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 556678999999888776554 22223333 334456788888888888888887777665443
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.8e-07 Score=100.47 Aligned_cols=280 Identities=12% Similarity=0.102 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003353 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348 (827)
Q Consensus 269 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 348 (827)
++...-...+-+...+++.+..++++...+. .+++...+..-|.++...|+..+-..+=.++.+.- +....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 3344444444445556666666666666554 23344444444555666666555555555555542 444556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCh
Q 003353 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA--GFRPNFGLFTMIIESHAKSGKL 426 (827)
Q Consensus 349 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~li~~~~~~g~~ 426 (827)
-|.-.|+..+|.+.|.+....+ +.-...|-.....|+-.|..|+|+..+...-+. |.. -+..| +.--|.+.+++
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccH
Confidence 6666666666666666555432 112345666666666666666666665554432 111 01112 22345556666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCCHHHHH
Q 003353 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA--GL---R-PGLSTYTALLTLLAKRKLVDVAA 500 (827)
Q Consensus 427 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~-pd~~t~~~li~~~~~~g~~~~A~ 500 (827)
+.|.+.|.+..... +.|+...+-+.-...+.+.+.+|..+|+..+.. .+ . --..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 66666666555432 224555555555555556666666666555421 00 0 12234555555666666666666
Q ss_pred HHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003353 501 KILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFE 557 (827)
Q Consensus 501 ~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 557 (827)
..+++.+...++...++.++...|...|+++.|.+.|.+.+ .+.|++.+...++.
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 66666666555544555666666666666666666666555 34555555544443
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=9.3e-11 Score=87.65 Aligned_cols=50 Identities=28% Similarity=0.469 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH
Q 003353 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317 (827)
Q Consensus 268 p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~ 317 (827)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=3.5e-09 Score=105.57 Aligned_cols=229 Identities=11% Similarity=0.058 Sum_probs=127.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423 (827)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 423 (827)
+.+.++|.+.|.+.+|++.++...+. .|-+.||-.|-.+|.+..+++.|+.++.+-.+.- +-|+.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 44555566666666666665555544 3444455555556666666666666665555431 11222223344555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 424 GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKIL 503 (827)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~ 503 (827)
++.++|.++|+...+... .++....++..+|.-.++.+.|+..|++++.-|+. +...|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 666666666666555322 24445555555566666666666666666665554 4555555555555666666666666
Q ss_pred HHHHHCCCCch---HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003353 504 LEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 504 ~~m~~~g~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
+.+...-..|+ ..|+++.......|++.-|.+.|+-.+..+.. +...++.|.---.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 66655544444 25666666666666666666666666544322 3345555544455666666666666665543
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=1.5e-10 Score=86.57 Aligned_cols=49 Identities=35% Similarity=0.692 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 373 PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421 (827)
Q Consensus 373 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 421 (827)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=6.4e-09 Score=103.76 Aligned_cols=225 Identities=11% Similarity=0.084 Sum_probs=99.7
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
++.+.++|.+.+|.+.|+....+ .|-+++|..+-.+|.+-.+.+.|+.++.+-+... |.++....-+...+-.
T Consensus 230 gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f----P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF----PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC----CchhhhhhhhHHHHHH
Confidence 33344444444444444444443 2334444444444555445555555444444433 3333333444444444
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.++.++|.++|+...+.... ++.+...+...|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+++|.++..
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 44445555555444443321 3334444444444444444555555554444443 444444444444444444444444
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 328 FQEMKERNFRPS--FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 328 ~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
|++....--.|+ ..+|..+.......|++..|.+.|+-....+ ..+...+|.|.-.-.+.|++++|..+++...
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 444443221121 1234444444444444444444444444332 1233344444444444444444444444433
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.09 E-value=2.2e-06 Score=95.43 Aligned_cols=406 Identities=13% Similarity=0.038 Sum_probs=265.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHH
Q 003353 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272 (827)
Q Consensus 193 ~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 272 (827)
+.-+...|..+.-++...|+++.+.+.|++....- ......|+.+...|.-+|.-..|+.+++........|+..+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~----~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS----FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 45688899999999999999999999999988764 56678899999999999999999999988776543444333
Q ss_pred -HHHHHHHHHH-cCChhHHHHHHHHhHhC--Cc--cCCHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHcC
Q 003353 273 -YNVLMTLFLN-KGLPYKAFEIYESMEKG--EC--SLDGSTYELMIPSLAK-----------SGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 273 -~n~li~~~~~-~g~~~~A~~~~~~m~~~--g~--~pd~~t~~~li~~~~~-----------~g~~~~A~~~~~~m~~~g 335 (827)
+-..-..|.+ .+.++++++.-.+.+.. +. ......|-.+.-+|.. .....++.+.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333333 46777777777666552 11 1123344444444432 123567888889988876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003353 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM 415 (827)
Q Consensus 336 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 415 (827)
+.|..+.-.+.--|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+.....-. -|......
T Consensus 475 -~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~ 552 (799)
T KOG4162|consen 475 -PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDG 552 (799)
T ss_pred -CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchh
Confidence 3333333334456778899999999999999886677899999999999999999999999987765311 12222222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc---------------------CC-------CCCHHHHHHHHHHHHHcCCHhHHHHH
Q 003353 416 IIESHAKSGKLDIAMSIFTDMERA---------------------GF-------LPTPSTYSCLLEMHASSGQVDSAMKL 467 (827)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~---------------------g~-------~p~~~t~~~li~~~~~~g~~~~A~~l 467 (827)
-++.-...++.++|......+... |+ .-...++..+..-.. -+.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccc
Confidence 222333355555555554444321 00 001112221111111 000000000
Q ss_pred HHHHHHCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 468 YNSMTSAGLRP--G------LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRF 539 (827)
Q Consensus 468 ~~~m~~~g~~p--d------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 539 (827)
.. |...-+.| + ...|......+.+.+..++|...+.++....+.....|+-....+...|..++|.+.|..
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 00 11111222 2 123445556677788888888888888776554445667777788888999999999888
Q ss_pred HhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 540 MGSSGIRTN-NFIVRQLFESCMKNALYESAKP--LLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 540 m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~--~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l 610 (827)
... +.|+ .....++...+.+.|+...|.. ++..+++.++. +...|-.+...+-+.|+.++|...|...
T Consensus 710 Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 710 ALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 874 4455 4577778888888888777777 88888888776 7888989999999999998888877653
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.08 E-value=4.9e-07 Score=101.37 Aligned_cols=291 Identities=13% Similarity=0.124 Sum_probs=182.8
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~-~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
+.++...|++++|++.++..... .+|. .........+.+.|+.++|..++..++..+ |.+..-|..+..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN----Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN----PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHh
Confidence 46667778888888888765543 3443 455577788888888888888888888887 777777777777763
Q ss_pred HcC-----CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC
Q 003353 247 KAD-----KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY-KAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320 (827)
Q Consensus 247 ~~g-----~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~-~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~ 320 (827)
-.. ..+...++|+++...- |...+...+.-.+.....+. .+...+..+...|+++ +|+.|-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 332 4666777777776543 22222222222222212232 3455566666777653 55555555555545
Q ss_pred HHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 003353 321 LDAAIKLFQEMKER----N----------FRPSFN--IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS-APMYVSLIE 383 (827)
Q Consensus 321 ~~~A~~~~~~m~~~----g----------~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~ 383 (827)
.+-..+++...... + -+|+.. ++.-+...|-..|++++|++..++.++. .|+ +..|..-..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 55555555554322 1 123332 3455566777788888888888887775 344 557777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HH----HH--HHHHHHH
Q 003353 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT--PS----TY--SCLLEMH 455 (827)
Q Consensus 384 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~----t~--~~li~~~ 455 (827)
.+-+.|++++|.+.++........ |...-+-.+..+.++|++++|.+++....+.+..|. .. .| .-...+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 888888888888888888776554 666666777777888888888888777766543221 11 12 2334667
Q ss_pred HHcCCHhHHHHHHHHHHH
Q 003353 456 ASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 456 ~~~g~~~~A~~l~~~m~~ 473 (827)
.+.|++..|++-|....+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777776666554
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.08 E-value=3.2e-07 Score=102.89 Aligned_cols=262 Identities=13% Similarity=0.148 Sum_probs=145.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
.-.....+...|++++|++.+++-...- .............+.+.|+.++|..+|..+.+.++. |..-|..+..+
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I----~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~ 81 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQI----LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 3344566788999999999998865543 566778888899999999999999999999988753 55555555555
Q ss_pred HHHc-----CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 280 FLNK-----GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRL-DAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 280 ~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
.... ...+...++|+++...- |.......+.-.+.....+ ..+...+..+..+|++ .+|+.|-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 5222 24667788888886642 3333333232222222223 3455666777788864 5677777777766
Q ss_pred CCHHHHHHHHHHHHhCC--------------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003353 354 GRLDTSMKVYMEMQGCG--------------HRPSAPMY--VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g--------------~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 417 (827)
.+.+-...++......- -.|+...| .-+...|-..|++++|++++++.++..+. .+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 55555555555544210 01222222 22333444445555555555544443211 133344444
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
..+-+.|++.+|.+.++...+.... |-..-+-.+..+.++|++++|.+++....+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 4444444554444444444443222 333333344444444444444444444443
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.07 E-value=1.4e-08 Score=113.53 Aligned_cols=270 Identities=16% Similarity=0.162 Sum_probs=155.3
Q ss_pred HHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 258 FKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337 (827)
Q Consensus 258 ~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 337 (827)
+-.+...|+.||.+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+...+++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 445566677777777777777777777777776 7777766666666777777777777777766655 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Q 003353 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR-IAGFRPNFGLFTMI 416 (827)
Q Consensus 338 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~pd~~t~~~l 416 (827)
|...||+.|..+|...||+.. .+..++ -.-.++..+...|--..-..++..+. .-+.-||..+ .
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 666777777777777777655 222222 01112223333333333333332221 1122333322 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003353 417 IESHAKSGKLDIAMSIFTDMERAGF-LPTPSTYSCLLEMHASSG-QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494 (827)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 494 (827)
+.-..-.|.++.+.+++..+..... .|..+ +++-+.... .+++-..+-....+ .|+..+|..++.+-...|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 2233344555555555544432111 11111 122222222 23333333222222 477888888888777788
Q ss_pred CHHHHHHHHHHHHHCCCCchH-hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 003353 495 LVDVAAKILLEMKTMGYSVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNAL 564 (827)
Q Consensus 495 ~~~~A~~l~~~m~~~g~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 564 (827)
+.+.|..++.+|.+.|+..+. .+..|+-+ .++..-+..++..|.+.|+.|+..|+.-.+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888888888877665 34455544 67777777788888888888888877766666666554
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=1.9e-07 Score=103.39 Aligned_cols=235 Identities=18% Similarity=0.183 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC-C
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRIA-----GF-RPNFGL-FTMIIESHAKSGKLDIAMSIFTDMERA-----GFL-P 443 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~pd~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p 443 (827)
+...+...|...|+++.|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |-. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333555555555555555555544332 11 122222 223555666777777777777776531 211 1
Q ss_pred -CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 003353 444 -TPSTYSCLLEMHASSGQVDSAMKLYNSMTS-----AGLR-PGLS-TYTALLTLLAKRKLVDVAAKILLEMKTM-----G 510 (827)
Q Consensus 444 -~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-pd~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g 510 (827)
-..+++.|..+|.+.|++++|...+++..+ .|.. |... .++.+...|+..+++++|..+++...+. |
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 123566666677777777777766666543 1222 2222 4555666778888888888888876543 2
Q ss_pred CCc-h--HhHHHHHHHHHHcCCHHHHHHHHHHHhhCC----C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 003353 511 YSV-D--VSASDVLMVYIKDGSVDHALRWLRFMGSSG----I--RTN-NFIVRQLFESCMKNALYESAKPLLETYVE--- 577 (827)
Q Consensus 511 ~~~-~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~----~--~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--- 577 (827)
... . .++..|...|.+.|++++|.+++++++... - .+. ...++.+...|.+.+.+++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 222 1 256788889999999999999998887431 1 222 45677888889999999999988887543
Q ss_pred -CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003353 578 -SAAK-VD-LVLYTSVLAHLVRCQDEQNERHLMAILS 611 (827)
Q Consensus 578 -~g~~-pd-~~t~~~ll~a~~~~g~~~~a~~l~~~l~ 611 (827)
.|+. || ..+|..|...|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3433 33 4588999999999999999999877654
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=3.7e-07 Score=96.88 Aligned_cols=219 Identities=13% Similarity=0.031 Sum_probs=154.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPG--DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~--~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
...+.++.-+..+.......|+ ...|..+...+.+.|+.++|...|++.++.. |.+..+|+.+...|...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR----PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHH
Confidence 4556677777777764332232 3567788888899999999999999999887 888999999999999999999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
+|...|++..+..+. +..+|..+..++...|++++|++.|++..+.. |+..........+...++.++|.+.+++..
T Consensus 116 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999887654 67788888888989999999999999988753 443322222233445678999999997765
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 333 ERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG---H---RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 333 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g---~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 405 (827)
... .++...+ . ......|+...+ +.+..+.+.. + +....+|..+...+.+.|++++|+..|++..+..
T Consensus 193 ~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 443 3332222 2 222335555544 3444444211 0 1123567888888888888888888888888754
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.99 E-value=4.4e-07 Score=100.50 Aligned_cols=236 Identities=16% Similarity=0.158 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-C
Q 003353 306 STYELMIPSLAKSGRLDAAIKLFQEMKER-----NF-RPSFNI-FASLVDSMGKAGRLDTSMKVYMEMQGC-----GH-R 372 (827)
Q Consensus 306 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 372 (827)
.|...+...|...|+++.|..+++...+. |. .|.+.+ .+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555777777777777777777776554 10 122222 223455666666666666666665531 11 1
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 003353 373 PS-APMYVSLIESYAKAGKLDTALRLWDEMRIA-----GF-RPNF-GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPT 444 (827)
Q Consensus 373 p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 444 (827)
|. ..+++.|..+|++.|++++|...+++..+- |. .|.+ .-++.+...|+..+++++|..+++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q---------- 349 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ---------- 349 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH----------
Confidence 11 234555555666666666666555544321 10 1111 112333334444444444444444
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C--
Q 003353 445 PSTYSCLLEMHASSGQVDSAMKLYNSMTSA---GLRPG----LSTYTALLTLLAKRKLVDVAAKILLEMKTMG----Y-- 511 (827)
Q Consensus 445 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g----~-- 511 (827)
...+. -..++ ..+++.|...|.+.|++++|+++|++++..- -
T Consensus 350 -------------------------~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 350 -------------------------KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred -------------------------HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 33321 01111 1245555555555555555555555554321 1
Q ss_pred Cch--HhHHHHHHHHHHcCCHHHHHHHHHHHhh----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 512 SVD--VSASDVLMVYIKDGSVDHALRWLRFMGS----SGI-RTN-NFIVRQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 512 ~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~-~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
.+. ..++.|...|.+.+++++|.++|.+... .|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111 2345555555555665555555554331 121 122 4466666666667777777766666654
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.6e-05 Score=82.40 Aligned_cols=316 Identities=12% Similarity=0.024 Sum_probs=214.2
Q ss_pred hCCccCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003353 298 KGECSLDGSTYELMIPSLAK--SGRLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS 374 (827)
Q Consensus 298 ~~g~~pd~~t~~~li~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 374 (827)
...+.|+..+....+.+++. .++...|...+-.+... -++.|+.....+.+++...|+.++|...|++....+ |+
T Consensus 187 ~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py 264 (564)
T KOG1174|consen 187 AATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PD 264 (564)
T ss_pred heecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hh
Confidence 33345555566666666554 35555555555544433 256677888899999999999999999999887542 33
Q ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003353 375 AP-MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLE 453 (827)
Q Consensus 375 ~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 453 (827)
.. ......-.+.+.|++++...+...+....- -....|-.-........+++.|..+-++.++.+.. +...|-.-..
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~ 342 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGR 342 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccH
Confidence 22 222233345678888888888877765321 12222322233445567888888888877764322 4445544456
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHH-HHHH-HcCCH
Q 003353 454 MHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL-MVYI-KDGSV 530 (827)
Q Consensus 454 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li-~~y~-~~g~~ 530 (827)
.+.+.|+.++|.-.|+..+. +.| +..+|..|+..|...|++.+|.-.-+...+.-.....+..-+. ..+. ...--
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence 78889999999999998887 565 4569999999999999999998888777664333333333332 2222 22334
Q ss_pred HHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 531 DHALRWLRFMGSSGIRTNN-FIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609 (827)
Q Consensus 531 ~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 609 (827)
++|.+++++... +.|+. ...+.+..-|...|..++++.++++.+. ..||....+.|.+.+...+.+++|...+..
T Consensus 421 EKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 421 EKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 778888887764 45653 3455566678899999999999998875 568999999999999999999999998887
Q ss_pred HhhccCchhHHHhh
Q 003353 610 LSATKHKAHAFLCG 623 (827)
Q Consensus 610 l~~~~~~~~~~~~~ 623 (827)
....+|+....+.|
T Consensus 497 ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 497 ALRQDPKSKRTLRG 510 (564)
T ss_pred HHhcCccchHHHHH
Confidence 77766655544444
No 78
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.3e-06 Score=86.46 Aligned_cols=316 Identities=10% Similarity=0.085 Sum_probs=213.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH-HHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV-LMT 278 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~-li~ 278 (827)
+++++..+.+..++++|++++..-.+.. +.+....+.|...|-...++..|-.+++++-..- |...-|.. -..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~----p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS----PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHH
Confidence 5667777888999999999999888776 7788899999999999999999999999988754 44433332 233
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL--AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 356 (827)
.+-+.+.+.+|+.+...|... |+...-..-+.+. -..+++..+..++++....| +..+.+.......+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 455778999999999988763 2322222222222 34678888888888876433 334555566667789999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHhcCChhHHHH
Q 003353 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT-----MIIESHAKSGKLDIAMS 431 (827)
Q Consensus 357 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-----~li~~~~~~g~~~~A~~ 431 (827)
+.|.+-|....+-+--.....||..+.- .+.|+++.|++...++.++|++-... ++ -.+++- ..|+ -..
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvr-svgN---t~~ 234 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVR-SVGN---TLV 234 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchh-cccc---hHH
Confidence 9999999998875434456778876644 46789999999999999988642211 11 011100 0000 000
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003353 432 IFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 432 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 510 (827)
|...+ -+..+|.-...+.+.|+++.|.+.+..|.-+ .-..|++|...+.-. -..+++.++.+-+.-++...
T Consensus 235 ----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 235 ----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred ----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 11100 1223444455567888999999888888642 234577776655322 12445666666777777777
Q ss_pred CCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 511 YSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 511 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
+-|..++..++..|||..-++-|..++.+=.
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 8888899999999999999999988876543
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=5e-06 Score=91.19 Aligned_cols=201 Identities=11% Similarity=0.033 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...|..+...+...|+.+++.+.+....+....+ .............+...|++++|.+.+++..+..+. |...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR-ATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 3455556666666666776666666655443111 111223333344556677777777777777665433 4444442
Q ss_pred HHHHHH----cCChhHHHHHHHHhHhCCccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 277 MTLFLN----KGLPYKAFEIYESMEKGECSLD-GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351 (827)
Q Consensus 277 i~~~~~----~g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 351 (827)
...+.. .+..+.+.+.++.. .+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 222222 33444444444431 112233 3344455566777777778877777777765 445566677777777
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 352 KAGRLDTSMKVYMEMQGCGH-RPSA--PMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
..|++++|...+++...... .++. ..|..+...+...|++++|..++++...
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77788888777777665421 1222 2344566677777777777777777653
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.5e-05 Score=84.82 Aligned_cols=146 Identities=18% Similarity=0.119 Sum_probs=74.9
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 460 QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILL--------EMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 460 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
.+.+|.+++...-+..-.-..+..-.++......|+++.|.+++. .+.+.+..|. +...+...|.+.++.+
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~-~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG-TVGAIVALYYKIKDND 434 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh-HHHHHHHHHHhccCCc
Confidence 355555655555543211112344444555566777777777776 3333333222 3344555666666655
Q ss_pred HHHHHHHHHhhC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003353 532 HALRWLRFMGSS--GIRTN----NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERH 605 (827)
Q Consensus 532 ~A~~~~~~m~~~--~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 605 (827)
.|..++++.... .-.+. ..++..+..--.++|..++|..+++++++..+. |..+...++.+|++. +.+.|..
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHH
Confidence 566666555421 00111 122222222233567777777777777765433 666777777777654 3444444
Q ss_pred HHH
Q 003353 606 LMA 608 (827)
Q Consensus 606 l~~ 608 (827)
+-+
T Consensus 513 l~k 515 (652)
T KOG2376|consen 513 LSK 515 (652)
T ss_pred Hhh
Confidence 443
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.6e-05 Score=87.67 Aligned_cols=223 Identities=15% Similarity=0.153 Sum_probs=140.9
Q ss_pred HHHHHHHHcCCCCccHHHHhhhCCCCCCHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhH
Q 003353 136 AKIVEVVNRWKWGPELETQLDKLQFVPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDG 215 (827)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~ 215 (827)
.++...+...+.-..+--...+.|..|+.-.+.+-+.+ -++|.++++...+.+..+ | ..-++.+...+........
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~-~~die~I~DlFme~N~iQq 560 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR-SSPDQALQFAMMLVQDEE--P-LADIEQIVDLFMELNLIQQ 560 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-cChhHHHHHHHHhhccCC--C-cccHHHHHHHHHHHHhhhh
Confidence 44556666666666788888899999999888777776 567778887777666442 1 2223444444444444444
Q ss_pred HHHHHHHHHHcCCC--------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC
Q 003353 216 MLSLFDEMVHDSSK--------------------------NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269 (827)
Q Consensus 216 A~~l~~~m~~~~~~--------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 269 (827)
+...+-++++...+ +..-+..-+..+.+.|.+.|-++.|++.|.++.+. + -
T Consensus 561 ~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DI--K-R 637 (1666)
T KOG0985|consen 561 CTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI--K-R 637 (1666)
T ss_pred hHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHH--H-H
Confidence 44444433333210 00112233667888899999999999888776542 1 1
Q ss_pred HHHHHHH-----HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------
Q 003353 270 TQSYNVL-----MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER---------- 334 (827)
Q Consensus 270 ~~~~n~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~---------- 334 (827)
.+..+.+ +-.|...-.++++.+.++.|...++.-|..+...+..-|...=-.+...++|+.....
T Consensus 638 ~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSi 717 (1666)
T KOG0985|consen 638 VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSI 717 (1666)
T ss_pred HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHH
Confidence 1122222 2244555678888999999988877777777776666666665666666666665432
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 335 -NFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365 (827)
Q Consensus 335 -g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 365 (827)
++.-|+.+.--.|.+.|+.|++.+.+++.++
T Consensus 718 vn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 718 VNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred hccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 2445556666778888888888888877654
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=1e-06 Score=93.50 Aligned_cols=94 Identities=11% Similarity=-0.056 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 457 (827)
|..+...|.+.|+.++|...|++..+.... +...|+.+...+...|++++|.+.|+...+.... +..+|..+...+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 444444444444444444444444443221 3344444444444444444444444444443211 23344444444444
Q ss_pred cCCHhHHHHHHHHHHH
Q 003353 458 SGQVDSAMKLYNSMTS 473 (827)
Q Consensus 458 ~g~~~~A~~l~~~m~~ 473 (827)
.|++++|.+.|++..+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555555544444
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.92 E-value=5.1e-06 Score=94.63 Aligned_cols=163 Identities=8% Similarity=-0.068 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHH----c----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH
Q 003353 444 TPSTYSCLLEMHAS----S----GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515 (827)
Q Consensus 444 ~~~t~~~li~~~~~----~----g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 515 (827)
+..+|..|+..|.+ . .+...|...+....+.. .-+..+|+.|.-. ...|++.-|...|-+-+...+....
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~ 851 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC 851 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh
Confidence 34555555544443 1 22346777777777631 2345566666544 6678888888777777776666667
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF-IVRQLFESCMKNALYESAKPLLETYV----ESAAKVDLVLYTSV 590 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~----~~g~~pd~~t~~~l 590 (827)
+|.++...+.+..+++.|...|...... .|++. .|....-.....|+.-++..+|..-- ..|--++..-|-+.
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 8999999999999999999999988754 45433 34333222335677888888887622 23444566655555
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 003353 591 LAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 591 l~a~~~~g~~~~a~~l~~~l 610 (827)
..-=..+|+.++-..-.+.+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHHhccchHHHHHHhhhh
Confidence 54455666665554444443
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.5e-05 Score=79.23 Aligned_cols=299 Identities=10% Similarity=0.016 Sum_probs=211.8
Q ss_pred HHHHHHH--cCChhHHHHHHHHhHhC-CccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 276 LMTLFLN--KGLPYKAFEIYESMEKG-ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352 (827)
Q Consensus 276 li~~~~~--~g~~~~A~~~~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 352 (827)
-|.++++ .++-..|...+-.+... -++-|+.....+.+.+...|+.++|...|++....+ +-++.......-.+.+
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQ 278 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHh
Confidence 3444443 34444444444433322 255577788899999999999999999999887654 2222222333444567
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003353 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
.|+++....+...+.... .-....|-.-...+...++++.|+.+-++.++.... +...|-.-...+...|+.++|.-.
T Consensus 279 eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred ccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHH
Confidence 888888888888777532 223444555555666778899999988888875433 445555555677788999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCC
Q 003353 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL-TLLA-KRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 433 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li-~~~~-~~g~~~~A~~l~~~m~~~g 510 (827)
|+..+... +-+...|..|+..|...|++.||.-+-+...+. +.-+..+...+. ..|. .-..-|+|..+++..++..
T Consensus 357 FR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 357 FRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 99887642 137889999999999999999998877666552 223444444332 2222 2334588999999888865
Q ss_pred CCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003353 511 YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581 (827)
Q Consensus 511 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 581 (827)
+.-......+...+...|+.++++.++++... ..||....+.|.+.+...+.+++|.+.|...++.+++
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 54445777888889999999999999998874 5789999999999999999999999999999887776
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=1.1e-06 Score=84.68 Aligned_cols=206 Identities=16% Similarity=0.110 Sum_probs=172.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
+...+.-.|.+.|++..|..-+++.++.. |.+..+|..+...|.+.|..+.|.+.|++..+..+. +....|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D----Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD----PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhH
Confidence 56677888999999999999999999988 888999999999999999999999999999987765 7778888999
Q ss_pred HHHHcCChhHHHHHHHHhHhCCcc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECS-LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 357 (827)
-+|..|++++|...|++....-.- --..||..+.-+..+.|+.+.|.+.|++..+.+ +....+.-.+.....+.|++-
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccch
Confidence 999999999999999998876322 234588888888899999999999999999876 445567778888899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003353 358 TSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF 413 (827)
Q Consensus 358 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 413 (827)
.|...++.....+. ++..+.-..|..--..|+.+.+-+.=.++.+. -|...-|
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 99999999887774 78888888888888899998888777666654 3444433
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.88 E-value=4.1e-05 Score=85.65 Aligned_cols=467 Identities=13% Similarity=0.068 Sum_probs=278.5
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH---HhcCChhHH-------------------HHHHHHHHHc-CCC
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVL---NESRDFDGM-------------------LSLFDEMVHD-SSK 229 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l---~~~g~~~~A-------------------~~l~~~m~~~-~~~ 229 (827)
..++.+.++.-+..+..++| +-++.++..+...+ ...++.+++ .-..--+... ...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w-~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSW-SLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred CCCCchHHHHhhhHHhhccc-ccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 34666778888877777664 44444444333222 233343433 2211111110 101
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCH-HHH
Q 003353 230 NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG-STY 308 (827)
Q Consensus 230 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~ 308 (827)
....+..+|..|.-+...+|+++.+.+.|++....-+ -....|+.+-..|...|.-..|+.++++-......|+. ..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 1245788999999999999999999999999876433 36778999999999999999999999887654333443 344
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCC-C
Q 003353 309 ELMIPSLAK-SGRLDAAIKLFQEMKER--NF--RPSFNIFASLVDSMGKAG-----------RLDTSMKVYMEMQGCG-H 371 (827)
Q Consensus 309 ~~li~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~t~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g-~ 371 (827)
-..-+.|.+ .+.++++..+-.++... +. ......|-.+.-+|...- ...++.+.+++..+.+ -
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444444443 46777777777776651 11 122355666666665321 2456778888887654 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHH
Q 003353 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA-GFLPTPSTYSC 450 (827)
Q Consensus 372 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ 450 (827)
.|++..|-++ -|+..++.+.|.+..++..+.+-.-+...|..+.-.+.-.+++.+|+.+.+...+. |. |.+....
T Consensus 477 dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDG 552 (799)
T ss_pred CchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchh
Confidence 4444444443 46677899999999999998866678889988888888899999999999876642 21 1111111
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHC---------------------CC-----CC-C-HHHHHHHHHHHHhcCCHHHHHHH
Q 003353 451 LLEMHASSGQVDSAMKLYNSMTSA---------------------GL-----RP-G-LSTYTALLTLLAKRKLVDVAAKI 502 (827)
Q Consensus 451 li~~~~~~g~~~~A~~l~~~m~~~---------------------g~-----~p-d-~~t~~~li~~~~~~g~~~~A~~l 502 (827)
-+..-...++.++|+.....++.- |+ .| + ..++..+..-... +.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccc
Confidence 122222345555555554444320 00 00 1 1122222221110 00000000
Q ss_pred HHHHHHCC--CCchH-------hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003353 503 LLEMKTMG--YSVDV-------SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLE 573 (827)
Q Consensus 503 ~~~m~~~g--~~~~~-------~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 573 (827)
.. +.+.. ..|+. .|....+.+.+.+..++|...+.+..... .-....|......+...|..++|.+.|.
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 00 11111 11221 24445567788888888888888777433 2234455555556677888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHhhccccccc
Q 003353 574 TYVESAAKVDLVLYTSVLAHLVRCQDEQNERH--LMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELE 651 (827)
Q Consensus 574 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~--l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (827)
..+..++. ++...+++...+.+.|+..-|.. ++..+.. ++
T Consensus 709 ~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr---------------------------------~d---- 750 (799)
T KOG4162|consen 709 VALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALR---------------------------------LD---- 750 (799)
T ss_pred HHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---------------------------------hC----
Confidence 88776555 56677788888877775444433 2222111 11
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 003353 652 EGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF 688 (827)
Q Consensus 652 ~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~ 688 (827)
|. .+-.|--|+.++-+.|+.++|.+-|+.+.+....
T Consensus 751 p~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 751 PL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 11 2345668999999999999999999999876543
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=8.3e-06 Score=89.41 Aligned_cols=203 Identities=10% Similarity=0.006 Sum_probs=121.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-IDT-QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 309 (827)
|.....|..+...+...|+.+++...+....+.... .+. .........+...|++++|.+.+++..+.. +.|...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 455667777777777778888877777665543321 122 122222334556788888888888877652 22333433
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003353 310 LMIPSLAK----SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385 (827)
Q Consensus 310 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 385 (827)
. ...+.. .+..+.+.+.++. .....+........+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 2 222222 3444445544443 111112223344455667777888888888888887764 33556677777778
Q ss_pred HHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 386 AKAGKLDTALRLWDEMRIAGF-RPNF--GLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 386 ~~~g~~~~A~~l~~~m~~~g~-~pd~--~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
...|++++|...+++..+... .|+. ..|..+...+...|++++|..++++...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888887766432 1222 2344566777778888888888877653
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.2e-05 Score=86.58 Aligned_cols=106 Identities=16% Similarity=0.072 Sum_probs=87.8
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
..+....||++.|+..|-.+...+ ++|-..|+.-..+++..|++++|++=-.+-++.. |.-...|+.+..++.-
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~----p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN----PDWAKGYSRKGAALFG 82 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC----CchhhHHHHhHHHHHh
Confidence 345567789999999999988876 5688889989999999999999988888887776 7778899999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~ 280 (827)
.|++++|+..|.+-.+..+. |...++.+..++
T Consensus 83 lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 99999999999988876544 667777777776
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=3.3e-05 Score=88.28 Aligned_cols=497 Identities=12% Similarity=0.038 Sum_probs=248.1
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
..++...|+.-|+.+.+-+ +.|...|..++.+|.++|++..|.++|.+..... |.+.+.--....+.+..|++.
T Consensus 574 ea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr----P~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR----PLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred CccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC----cHhHHHHHHHHHHHHHhhhHH
Confidence 3466777899999888876 6788899999999999999999999999988776 666666666777778889999
Q ss_pred HHHHHHHHhHhCC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH-------hCCccCCHHHHHHHHHHHH---
Q 003353 253 MSYCCFKKVLDSD------CKIDTQSYNVLMTLFLNKGLPYKAFEIYESME-------KGECSLDGSTYELMIPSLA--- 316 (827)
Q Consensus 253 ~A~~~~~~m~~~g------~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~-------~~g~~pd~~t~~~li~~~~--- 316 (827)
+|+..+..+...- ..--..++-.+...+...|-..+|.+.+++-+ .....-+...|-.+-.+|.
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence 9998888765421 00012233333333333343333333333322 1111112222222222211
Q ss_pred --------------------HcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c----CCHHHHHHH
Q 003353 317 --------------------KSGRL---D---AAIKLFQEMKERNFRPSFNIFASLVDSMGK----A----GRLDTSMKV 362 (827)
Q Consensus 317 --------------------~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~----g~~~~A~~~ 362 (827)
+.+.. | -+.+.+-.-.+ ...+..+|..|+..|.+ . .+...|...
T Consensus 728 q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c 805 (1238)
T KOG1127|consen 728 QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRC 805 (1238)
T ss_pred HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHH
Confidence 11111 0 00000000000 11223445555444433 1 122355566
Q ss_pred HHHHHhCCCCCCHHHHHHHHH---------------------------------HHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003353 363 YMEMQGCGHRPSAPMYVSLIE---------------------------------SYAKAGKLDTALRLWDEMRIAGFRPN 409 (827)
Q Consensus 363 ~~~m~~~g~~p~~~~~~~li~---------------------------------~~~~~g~~~~A~~l~~~m~~~g~~pd 409 (827)
+.+.++.. ..+..+||.|.- .+.++.+++.|...|...+...+. |
T Consensus 806 ~KkaV~L~-ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-n 883 (1238)
T KOG1127|consen 806 CKKAVSLC-ANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-N 883 (1238)
T ss_pred HHHHHHHh-hccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch-h
Confidence 65555432 234555555543 333344455555555544433221 3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH--H--HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH---------CCC
Q 003353 410 FGLFTMIIESHAKSGKLDIAMSIFTDM--E--RAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS---------AGL 476 (827)
Q Consensus 410 ~~t~~~li~~~~~~g~~~~A~~~~~~m--~--~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~---------~g~ 476 (827)
...|-.........|+.-++..+|..- . ..|-.++..-|-+......++|+.++-....+.+.. .|.
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 333333332333345555555555431 1 122233444444444444555555443333322221 122
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCch-----HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 003353 477 RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM-GYSVD-----VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550 (827)
Q Consensus 477 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~~~-----~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~ 550 (827)
.-+...|........+.+.++.|.++..+++.. ..+-+ +.-......++..|.++.|...+..... ..+..
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEd 1040 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDED 1040 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHH
Confidence 334456666666666677777777666655421 00111 1222344456667777766655543221 11222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHH-HHHHhhccCchhHHH--hhhc
Q 003353 551 IVRQLFESCMKNALYESAKPLLETYVES-AAKVD-LVLYTSVLAHLVRCQDEQNERHL-MAILSATKHKAHAFL--CGLF 625 (827)
Q Consensus 551 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~pd-~~t~~~ll~a~~~~g~~~~a~~l-~~~l~~~~~~~~~~~--~~l~ 625 (827)
+...-+ +..-.|+++++.+.|+++... +-.-| ++..+.++-+....+..+.|+.+ |+....++++....+ +.+.
T Consensus 1041 i~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1041 IRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVY 1119 (1238)
T ss_pred HhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 222222 224568999999999998753 22233 45667777777778888888765 555555555544443 2221
Q ss_pred cCCccccchhHHHHHHHhhcc-ccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 003353 626 TGPEQRKQPVLSFVREFFHGI-DYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLF 688 (827)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~ 688 (827)
..... ....+.+.+-+... ..+.-.-...+ ..--.|.+.|+-....++|+++.-..|.
T Consensus 1120 ild~d--a~~ssaileel~kl~k~e~~~~~~~l---l~e~i~~~~~r~~~vk~~~qr~~h~~P~ 1178 (1238)
T KOG1127|consen 1120 ILDAD--AHGSSAILEELEKLLKLEWFCWPPGL---LKELIYALQGRSVAVKKQIQRAVHSNPG 1178 (1238)
T ss_pred HHhhh--hhhhHHHHHHHHHhhhhHHhccChhH---HHHHHHHHhhhhHHHHHHHHHHHhcCCC
Confidence 11111 11111222211111 10100000111 2335677889988889999998876654
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=3.5e-05 Score=85.98 Aligned_cols=249 Identities=17% Similarity=0.237 Sum_probs=120.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCCCCHHHHHHHHHHHHHc
Q 003353 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK-----NGISLFSAYNRVIQYLAKA 248 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~-----~~~~~~~~~~~li~~~~~~ 248 (827)
.|+.|.|.+..+.+ .+...|..|.+.|.+.+++|-|.-.+-.|...... ....+...-......-...
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 45555555444422 23345666666666666666555554444332110 0000001111222223445
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328 (827)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 328 (827)
|.+++|..+|++-++ |..|=..|...|.|++|+++-+.--+. . =..||.....-+-..++++.|++.|
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 555555555555443 223333444555555555554432221 1 1223433444444445555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003353 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408 (827)
Q Consensus 329 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 408 (827)
++.-.. -..++..|. .++...+...+.+. |...|.--...+-..|++|.|+.+|...++
T Consensus 882 EK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 882 EKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 443211 111111111 11222222222222 334444445555567777777777766553
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 003353 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMT 472 (827)
Q Consensus 409 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 472 (827)
|-+++...|-.|+.++|-++-++-. |......|...|...|++.+|..+|.+..
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4556667777777777776655422 55555667777777788888877777664
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.00016 Score=78.78 Aligned_cols=420 Identities=12% Similarity=0.058 Sum_probs=191.5
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
..+++++|++....+.... +-+.+.+..-+-++.+.++|++|+.+.+.-.... ..+... ---..+..+.++.+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~----~~~~~~-fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL----VINSFF-FEKAYCEYRLNKLD 96 (652)
T ss_pred cchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh----hcchhh-HHHHHHHHHcccHH
Confidence 4466777777777776653 4555666666667777777777775544332111 111111 11122334567777
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 003353 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA-KSGRLDAAIKLFQEM 331 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~-~~g~~~~A~~~~~~m 331 (827)
+|...++...+ .+..+...-...+-+.|++++|+++|+.+.+.+.. .+..-+.+-+ ..+-.-.+ +.+
T Consensus 97 ealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~----~~~ 164 (652)
T KOG2376|consen 97 EALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQV----QLL 164 (652)
T ss_pred HHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhH----HHH
Confidence 77777763222 12224444445555677777777777777665332 2222221111 00000011 112
Q ss_pred HHcCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHHcCCHHHH
Q 003353 332 KERNFRPSFNIFAS---LVDSMGKAGRLDTSMKVYMEMQGC-------GHRPSAP-------MYVSLIESYAKAGKLDTA 394 (827)
Q Consensus 332 ~~~g~~p~~~t~~~---li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~-------~~~~li~~~~~~g~~~~A 394 (827)
......| ..+|.. ....+...|++.+|+++++...+. +-.-+.. .-..|.-.+-..|+-++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2211222 122322 334455677777777777776321 1111000 111223344567777777
Q ss_pred HHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCChh-HHHHHHHHHHHcCCC----------CCHHH-HHHHHHHHHHc
Q 003353 395 LRLWDEMRIAGFRPNFGLF----TMIIESHAKSGKLD-IAMSIFTDMERAGFL----------PTPST-YSCLLEMHASS 458 (827)
Q Consensus 395 ~~l~~~m~~~g~~pd~~t~----~~li~~~~~~g~~~-~A~~~~~~m~~~g~~----------p~~~t-~~~li~~~~~~ 458 (827)
..++...++... +|.... |.|+.+-....-++ .++..++........ -.... -+.++..|.
T Consensus 244 ~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 777777776643 243222 22221111111111 111222211110000 00011 112222221
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCch-HhHHHHHHHHHHcCCHHHHHH
Q 003353 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK--RKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALR 535 (827)
Q Consensus 459 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~~~-~~~~~li~~y~~~g~~~~A~~ 535 (827)
+..+.+.++-..... ..|.. .+..++..+.+ .....++.+++...-+..+... +....++......|+++.|++
T Consensus 321 nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 222333333222211 22332 33444443322 2246667777766665544332 244455666777888888888
Q ss_pred HHH--------HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHH
Q 003353 536 WLR--------FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES------AAKVDLVLYTSVLAHLVRCQDEQ 601 (827)
Q Consensus 536 ~~~--------~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a~~~~g~~~ 601 (827)
++. ...+.+..|-. ...+..-+.+.++.+.|..++.+.+.. +-.--..++.-+..-=.+.|..+
T Consensus 398 il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 888 45544444443 333445566777777777777666531 11111122222233334456666
Q ss_pred HHHHHHHHHhhccCchhHH
Q 003353 602 NERHLMAILSATKHKAHAF 620 (827)
Q Consensus 602 ~a~~l~~~l~~~~~~~~~~ 620 (827)
+|..+++++...+|.....
T Consensus 476 ea~s~leel~k~n~~d~~~ 494 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDL 494 (652)
T ss_pred HHHHHHHHHHHhCCchHHH
Confidence 6666666666544433333
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=0.00012 Score=74.32 Aligned_cols=310 Identities=11% Similarity=0.050 Sum_probs=153.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..|-..+++..|+.-|..+...+ +.+-.++..-...|...|+...|+.=++.+++.. |.-..+--.-...+.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK----pDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK----PDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC----ccHHHHHHHhchhhhh
Confidence 455556677777788787777753 2333455555667777777777877777777663 2223344445566777
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.|.+++|..=|+.+.+..+..+. ...++.+.-..++-+. ....+..+...|+...|.+.
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHH
Confidence 88888888888877765432111 1111111111111111 11122233445555556666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 407 (827)
...+++.. +=|...|..-..+|...|++..|+.=+....+.. ..++.+.--+-..+...|+.+.++...++..+. .
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--d 253 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--D 253 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--C
Confidence 55555543 3344555555556666666666655555444432 223444444445555556666665555555542 3
Q ss_pred CCHHHHHHH-------------HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHcCCHhHHHHHHHHH
Q 003353 408 PNFGLFTMI-------------IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYS---CLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 408 pd~~t~~~l-------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~li~~~~~~g~~~~A~~l~~~m 471 (827)
||....-.. +......+++.++.+..+...+.......+.|+ .+-.++...|++.+|++.-.+.
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 333211110 111223344444444444444433221222222 2233444445555555555555
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003353 472 TSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 472 ~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 510 (827)
++ +.|| ..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 334 L~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 334 LD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred Hh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 54 3443 3344444455555555555555555555543
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.76 E-value=3.7e-05 Score=95.48 Aligned_cols=333 Identities=12% Similarity=0.006 Sum_probs=181.1
Q ss_pred HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHH
Q 003353 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF------RPS--FNIFASLVDSMG 351 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~--~~t~~~li~~~~ 351 (827)
....|+++.+..+++.+.......+..........+...|+++++...++...+.-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666666552211111222223334444566777777777776643210 011 111222334455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHh
Q 003353 352 KAGRLDTSMKVYMEMQGCGHRPSA----PMYVSLIESYAKAGKLDTALRLWDEMRIA----GF-RPNFGLFTMIIESHAK 422 (827)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~t~~~li~~~~~ 422 (827)
..|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |. .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677788887777776652111121 23455556666778888877777766532 11 1112344555666777
Q ss_pred cCChhHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHH
Q 003353 423 SGKLDIAMSIFTDMER----AGFL--P-TPSTYSCLLEMHASSGQVDSAMKLYNSMTSA--GLRPG--LSTYTALLTLLA 491 (827)
Q Consensus 423 ~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd--~~t~~~li~~~~ 491 (827)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 7888888777776543 2211 1 2233445555666678888887777776542 11122 233444555666
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CchHhH-----HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHH
Q 003353 492 KRKLVDVAAKILLEMKTMGY--SVDVSA-----SDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN---FIVRQLFESCMK 561 (827)
Q Consensus 492 ~~g~~~~A~~l~~~m~~~g~--~~~~~~-----~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~ 561 (827)
..|+.++|.+.+.++..... .....+ ...+..+...|+.+.|.+++............ .....+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 77888888877777654211 111111 11223445577888888877665532211111 113345556777
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003353 562 NALYESAKPLLETYVES----AAKVD-LVLYTSVLAHLVRCQDEQNERHLMAILSA 612 (827)
Q Consensus 562 ~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~l~~~l~~ 612 (827)
.|++++|...+++..+. |...+ ..+...+..++.+.|+.++|...+.+...
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888888888777643 22222 23555666777788888888777766443
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.74 E-value=6.4e-06 Score=79.47 Aligned_cols=195 Identities=12% Similarity=0.014 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 457 (827)
...|.-+|.+.|++..|.+-+++..+.... +..++..+...|.+.|+.+.|.+-|+...+.... +-.+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 334445566666666666666666665432 4455666666666666666666666666654322 34445555555666
Q ss_pred cCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHH
Q 003353 458 SGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536 (827)
Q Consensus 458 ~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~ 536 (827)
.|++++|...|++....-.-+. ..||..+.-+..+.|+.+.|++.|++.++..+..+.....+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 6666666666666665321111 235555555555666666666666666666555555555566666666666666666
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 537 LRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575 (827)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 575 (827)
++.....+. ++.......|..-...|+-+.+-+.=.++
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 665555443 44444444444444555555554444443
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=2.8e-06 Score=91.99 Aligned_cols=218 Identities=13% Similarity=0.156 Sum_probs=96.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~ 287 (827)
.+.|++.+|.-.|+..++.. |.+..+|..|...-...++-..|+..+++..+..+. |....-+|.-.|...|.-.
T Consensus 296 m~nG~L~~A~LafEAAVkqd----P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD----PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC----hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 34444545544554444444 444445555544444444444454444444444333 4444444444444444444
Q ss_pred HHHHHHHHhHhCCcc--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 288 KAFEIYESMEKGECS--------LDGSTYELMIPSLAKSGRLDAAIKLFQEMK-ERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~--------pd~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
+|+..++..+....+ ++...-+. +.+.....+....++|-++. +.+..+|..+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 444444444332100 00000000 11111112222333333322 33323445555555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN--FGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
|...|+.++... +-|...||.|...++...+.++|+..|++..+. +|+ .+-|| |.-.|...|.+++|.+.|-+.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN-LGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh-hhhhhhhhhhHHHHHHHHHHH
Confidence 555555555433 224455555555555555555555555555543 222 12222 333455555555555555443
No 96
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=1.3e-05 Score=85.07 Aligned_cols=132 Identities=12% Similarity=0.081 Sum_probs=64.3
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESR-DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (827)
..++.++|+.+.+.+.+.+ +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+.
T Consensus 49 ~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n----pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN----PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC----CcchHHhHHHHHHHHHcCch
Confidence 3445555555555555543 233344444444444444 3455555555555554 44555555554444444432
Q ss_pred --HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHH
Q 003353 252 --EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312 (827)
Q Consensus 252 --~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 312 (827)
+++...++++.+..++ |..+|+...-++...|+++++++.++++++.++. |...|+...
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 3445555555544433 5555555555555555555555555555544322 334444333
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=7e-05 Score=93.07 Aligned_cols=378 Identities=12% Similarity=-0.017 Sum_probs=225.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+......+...|++.+|.......... ..-..............|+++.+...++.+.......+.........
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~-----~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA-----QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH-----HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 3444555666777777776544433111 01111222233445567788888777776642211122222334444
Q ss_pred HHHHcCChhHHHHHHHHhHhCC--c----cCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGE--C----SLDG--STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS----FNIFASL 346 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g--~----~pd~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~l 346 (827)
.+...|++++|..++.+....- . .+.. .....+...+...|++++|...+++..+.--..+ ....+.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 5567788888888887764320 0 1111 1222233455678899999998888766311112 1345666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC--C-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC--C-CHHHHH
Q 003353 347 VDSMGKAGRLDTSMKVYMEMQGCG--H-RPS--APMYVSLIESYAKAGKLDTALRLWDEMRI----AGFR--P-NFGLFT 414 (827)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~g--~-~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~--p-d~~t~~ 414 (827)
...+...|++++|...+++..... . .+. ..++..+...+...|++++|...+++... .+.. + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 677788899999988888776421 0 111 23455666778888999999888877654 2221 1 233455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCCHH--HH--H
Q 003353 415 MIIESHAKSGKLDIAMSIFTDMERA--GFLP--TPSTYSCLLEMHASSGQVDSAMKLYNSMTSA--GLRPGLS--TY--T 484 (827)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~--t~--~ 484 (827)
.+...+...|++++|...+++.... ...+ ....+..+...+...|+.++|.+.+++.... ....... .. .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 5666677789999998888876542 1112 2344555667778889999998888877542 1111111 11 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchH----hHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCC-HHHHHHH
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDV----SASDVLMVYIKDGSVDHALRWLRFMGSS----GIRTN-NFIVRQL 555 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~----~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l 555 (827)
..+..+...|+.+.|.+.+............ ....+..++...|+.++|...+++..+. |...+ ..+...+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1223445578888888887775543221111 1345566788889999999998887643 33322 2345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003353 556 FESCMKNALYESAKPLLETYVESAAK 581 (827)
Q Consensus 556 l~~~~~~g~~~~A~~~~~~m~~~g~~ 581 (827)
..++.+.|+.++|...+.+..+..-.
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 66788999999999999998876544
No 98
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=1.3e-05 Score=85.10 Aligned_cols=224 Identities=11% Similarity=0.081 Sum_probs=150.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
..+...++.++|+.+.+++++.. |.+..+|+....++.+.| ++++++..++++.+..++ +..+|+.....+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln----P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN----PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 33445567778888888888776 777777777777777777 568888888888776654 666777666555555
Q ss_pred CCh--hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH--
Q 003353 284 GLP--YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA---GRL-- 356 (827)
Q Consensus 284 g~~--~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~-- 356 (827)
|.. +++++.++++++...+ |..+|+...-++.+.|+++++++.++++++.+ +-|..+|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccc
Confidence 553 5677777777765433 66777777777777788888888888888776 45566677666555544 222
Q ss_pred --HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 003353 357 --DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA----GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG------ 424 (827)
Q Consensus 357 --~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g------ 424 (827)
+++.....+++... +-|...|+-+...+... +...+|.+.+.+..+.++. +...+..|++.|+...
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhh
Confidence 35666666666554 34666777777777662 3445677777776664432 5667777777777532
Q ss_pred ------------ChhHHHHHHHHHH
Q 003353 425 ------------KLDIAMSIFTDME 437 (827)
Q Consensus 425 ------------~~~~A~~~~~~m~ 437 (827)
..++|.++++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHH
Confidence 2367888888774
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=6.7e-05 Score=82.62 Aligned_cols=377 Identities=13% Similarity=0.114 Sum_probs=211.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH-------------c-----CCCCCCCC
Q 003353 174 INDSDTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVH-------------D-----SSKNGISL 234 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~~p~~-~~~~~li~~l~~~g~~~~A~~l~~~m~~-------------~-----~~~~~~~~ 234 (827)
-++++.|..+++.... .|+. ..|-.+.......|++--|.+.|..+-. . .+.+...+
T Consensus 457 ~~df~ra~afles~~~----~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 457 DGDFDRATAFLESLEM----GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred cCchHHHHHHHHhhcc----CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 4678888887775443 2443 3566665555555555444443332111 0 00011222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
.+-..+++..+ .+++.+|..+|-+-- + -..-|..|....+|++|+++-+.. |.+.-...-.+.+++
T Consensus 533 fykvra~lail--~kkfk~ae~ifleqn------~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~ 598 (1636)
T KOG3616|consen 533 FYKVRAMLAIL--EKKFKEAEMIFLEQN------A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQA 598 (1636)
T ss_pred HHHHHHHHHHH--HhhhhHHHHHHHhcc------c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHH
Confidence 22223333333 345777777774311 1 123466777778888888775432 222122233455666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH------------
Q 003353 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI------------ 382 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li------------ 382 (827)
+...|+-++|-++- .. +-. -.+.|..|.+.|..-.|.+....=.. +..|......+.
T Consensus 599 l~dt~qd~ka~elk----~s----dgd-~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydka 667 (1636)
T KOG3616|consen 599 LMDTGQDEKAAELK----ES----DGD-GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKA 667 (1636)
T ss_pred HHhcCchhhhhhhc----cc----cCc-cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhh
Confidence 66677766665431 11 111 22456777888877776654321110 112333333333
Q ss_pred -HHHHHcCCHHHHHHHHHHHHHc---------CCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 383 -ESYAKAGKLDTALRLWDEMRIA---------GFRPNFGLF-TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451 (827)
Q Consensus 383 -~~~~~~g~~~~A~~l~~~m~~~---------g~~pd~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 451 (827)
+.|-+..++++|++.|++--.- .++-.+++. ..-...+...|+++.|..-|-+... .-..
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~ka 738 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKA 738 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHH
Confidence 3333444455555555431110 011111111 1122334455666666655544322 1123
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
|.+-....++.+|+.+++.+.++.. -.--|..+.+-|+..|+++.|+++|-+.- .+...|++|.+.|+++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHH
Confidence 4455667889999999998887533 23356777889999999999999986542 3566799999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609 (827)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 609 (827)
+|.++-.+.. |.+.....|-+-..-..++|++.+|.+++-.. -.|| .-|..|-+.|..++..++.++
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----GEPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----cCch-----HHHHHHHhhCcchHHHHHHHH
Confidence 9999887665 43444555555555577899999999888654 2344 346789999999999888765
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=3.8e-06 Score=90.99 Aligned_cols=219 Identities=15% Similarity=0.151 Sum_probs=172.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393 (827)
Q Consensus 314 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 393 (827)
-+.+.|++.+|.-.|+..++.+ +-+...|.-|.......++-..|+..+.+..+.. +.|....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3578899999999999999887 6788999999999999999999999999999875 4477788888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMII-----------ESHAKSGKLDIAMSIFTDME-RAGFLPTPSTYSCLLEMHASSGQV 461 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li-----------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~~~g~~ 461 (827)
|+++++.-+...++ |..+. ..+.....+....++|-++. ..+..+|......|.-.|--.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999988664321 11110 11111222344455555554 455457788888888889999999
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 462 DSAMKLYNSMTSAGLRPGL-STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFM 540 (827)
Q Consensus 462 ~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 540 (827)
++|.+.|+..+. ++|+. ..||.|...++...+.++|+..|.++++..+.-..+.+.|...|...|.+++|.+.|-.+
T Consensus 447 draiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 447 DRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999998 67754 589999999999999999999999999854444457889999999999999999988766
Q ss_pred h
Q 003353 541 G 541 (827)
Q Consensus 541 ~ 541 (827)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 5
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=8.7e-07 Score=92.75 Aligned_cols=247 Identities=12% Similarity=0.138 Sum_probs=135.7
Q ss_pred HHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003353 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSM 360 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 360 (827)
.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. .++.+.. .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566766665544 222222223445556666777777665433 3333333 455555544444333334444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 361 KVYMEMQGCGHRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 361 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
.-+++.......+ +..........+...|++++|++++.+- .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444333222221 2222222233455567788777777542 25566666777788888888888888887764
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH
Q 003353 440 GFLPTPSTYSCLLEMHAS----SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV 515 (827)
Q Consensus 440 g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 515 (827)
+ .| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..+....|++++|++++.+....+.....
T Consensus 161 ~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 161 D--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp S--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred C--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 2 23 333334444332 23578888888887654 4567777777777777888888888888887766555445
Q ss_pred hHHHHHHHHHHcCCH-HHHHHHHHHHhh
Q 003353 516 SASDVLMVYIKDGSV-DHALRWLRFMGS 542 (827)
Q Consensus 516 ~~~~li~~y~~~g~~-~~A~~~~~~m~~ 542 (827)
+..+++......|+. +.+.+.+.++..
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666677766666766 556667766664
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=0.00013 Score=72.78 Aligned_cols=192 Identities=14% Similarity=0.029 Sum_probs=126.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
...|-+-.++..|+++...-.++. +.+....+.+..+|-...++..|-..++++.... |.-..---.-...+-+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~----P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH----PELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----hHHHHHHHHHHHHHHH
Confidence 333444556777788877666654 3477788888888888899999999998887653 2222222223556677
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL--NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAI 325 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~--~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~ 325 (827)
.+.+.+|+++...|.+. ++...-..-+.+.. ..+++..+..+.++....| +..+.+...-..-+.|++++|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 88889999998887752 33322222222222 3577777888888776432 4444444444556889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003353 326 KLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372 (827)
Q Consensus 326 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 372 (827)
+-|+...+-+--.....||..+ +..+.|+++.|++...++++.|++
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 9998887764333345666555 445678889999999888877653
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=0.0011 Score=74.60 Aligned_cols=35 Identities=9% Similarity=-0.095 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 003353 656 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPK 690 (827)
Q Consensus 656 ~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~ 690 (827)
..++.-||..|....++..|.+.++.+..+-+.-|
T Consensus 1330 ~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1330 TRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence 34567899999999999999999999987765433
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.0013 Score=71.05 Aligned_cols=410 Identities=14% Similarity=0.166 Sum_probs=251.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+-|..+|+.||+-+... ..+++.+.++++.... +.....|..-|..-.+.++++..+.+|.+....- .+...|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F----P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF----PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLW 89 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC----CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHH
Confidence 57899999999976555 9999999999998776 8888999999999999999999999999987643 467788
Q ss_pred HHHHHHHHH-cCChh----HHHHHHHHhH-hCCccCCH-HHHHHHHH---------HHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 274 NVLMTLFLN-KGLPY----KAFEIYESME-KGECSLDG-STYELMIP---------SLAKSGRLDAAIKLFQEMKERNFR 337 (827)
Q Consensus 274 n~li~~~~~-~g~~~----~A~~~~~~m~-~~g~~pd~-~t~~~li~---------~~~~~g~~~~A~~~~~~m~~~g~~ 337 (827)
..-|+--.+ +|+.. ...+.|+-.. +.|+.+-. ..|+..+. -+....+++...++++++...-+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 777754433 23332 2334444433 33543322 23444443 245556788888899988765332
Q ss_pred CCHHHHH------HHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHHHHHH
Q 003353 338 PSFNIFA------SLVDSM-------GKAGRLDTSMKVYMEMQG--CGHRPSAP---------------MYVSLIESYAK 387 (827)
Q Consensus 338 p~~~t~~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~---------------~~~~li~~~~~ 387 (827)
.=...|+ .=|+-. -+...+..|.+++++... .|...+.. .|-.+|.-=-.
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 1112222 111111 123356677777777653 33322222 24444432111
Q ss_pred cC------CH--HHHHHHHHHH-HHcCCCCCHHHHH-----HHHHHHHhcCC-------hhHHHHHHHHHHHcCCCCCHH
Q 003353 388 AG------KL--DTALRLWDEM-RIAGFRPNFGLFT-----MIIESHAKSGK-------LDIAMSIFTDMERAGFLPTPS 446 (827)
Q Consensus 388 ~g------~~--~~A~~l~~~m-~~~g~~pd~~t~~-----~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~ 446 (827)
++ .. ....-.+++. .-.+..|+..-.. ..-+.+...|+ -+++..+++.....-..-+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 10 1111222221 2223344332211 11122333333 467778888766543333556
Q ss_pred HHHHHHHHHHHcC---CHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HhHHHHH
Q 003353 447 TYSCLLEMHASSG---QVDSAMKLYNSMTSA-GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVL 521 (827)
Q Consensus 447 t~~~li~~~~~~g---~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~li 521 (827)
+|..+.+-=-..- +.+...+++++++.. ...|+ .+|..+++.-.+...++.|..+|.++.+.+..+. +...+.+
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 6666554322222 366777788777763 23343 4677788888888889999999999998887773 4333333
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 003353 522 MVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD--LVLYTSVLAHLVRCQD 599 (827)
Q Consensus 522 ~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~ 599 (827)
.-|--.++.+-|.++|+--..+- .-+..-....++-+...++-..|..+|++.+..+..|| ...|..+|+-=..-|+
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 34445678888999998655431 22334444566777788899999999999988865554 4689999988888899
Q ss_pred HHHHHHHHHHHhh
Q 003353 600 EQNERHLMAILSA 612 (827)
Q Consensus 600 ~~~a~~l~~~l~~ 612 (827)
...+.++-+++..
T Consensus 488 L~si~~lekR~~~ 500 (656)
T KOG1914|consen 488 LNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887766443
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.56 E-value=1.9e-06 Score=90.31 Aligned_cols=251 Identities=14% Similarity=0.168 Sum_probs=154.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003353 350 MGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429 (827)
Q Consensus 350 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 429 (827)
+.-.|++..++.-.+ ........+.....-+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344677777775555 222211222334555667777788776544 3333333 55655555554444333344444
Q ss_pred HHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 430 MSIFTDMERAGFLPTPSTY-SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 430 ~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
..-+++....+..++..++ ......+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444333322222222222 22234556678888888887643 3556667778888999999999999999887
Q ss_pred CCCCchHhHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003353 509 MGYSVDVSASDVLMVYIK----DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584 (827)
Q Consensus 509 ~g~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 584 (827)
. ..|.+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++++..+.++. |.
T Consensus 160 ~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~ 235 (290)
T PF04733_consen 160 I--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DP 235 (290)
T ss_dssp C--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HH
T ss_pred c--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CH
Confidence 4 445555555554433 23689999999998764 4577888888888899999999999999998877665 66
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHhhccC
Q 003353 585 VLYTSVLAHLVRCQDE-QNERHLMAILSATKH 615 (827)
Q Consensus 585 ~t~~~ll~a~~~~g~~-~~a~~l~~~l~~~~~ 615 (827)
.+...++-+....|+. +.+.+.+.++....|
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 6777788877888887 667778888776544
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=0.00039 Score=70.74 Aligned_cols=188 Identities=11% Similarity=0.060 Sum_probs=88.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 003353 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMK 466 (827)
Q Consensus 387 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 466 (827)
-.|+...|++....+.+-.+ .|...|..-..+|...|++..|+.-++...+..-. +..+.--+-..+.+.|+.+.++.
T Consensus 167 ~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred cCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555555444321 24444444445555555555554444433332111 33333334444455555555555
Q ss_pred HHHHHHHCCCCCCHHH-H---HHH---------HHHHHhcCCHHHHHHHHHHHHHCCCC-chHhHH---HHHHHHHHcCC
Q 003353 467 LYNSMTSAGLRPGLST-Y---TAL---------LTLLAKRKLVDVAAKILLEMKTMGYS-VDVSAS---DVLMVYIKDGS 529 (827)
Q Consensus 467 l~~~m~~~g~~pd~~t-~---~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~-~~~~~~---~li~~y~~~g~ 529 (827)
..++-++ +.||... | ..| +......+++.++.+-.+...+..+. +.+.++ .+-..|...|+
T Consensus 245 ~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 245 EIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 5555544 3444321 1 000 01122344555555555555555444 222222 22234455666
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003353 530 VDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLETYVESAA 580 (827)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 580 (827)
+.+|++...+.++ +.|+ ..++.--..+|.-...+++|+.-|++..+.+.
T Consensus 323 ~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 323 FGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 6667666666663 3444 44555555566666666666666666665443
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.00037 Score=75.36 Aligned_cols=405 Identities=12% Similarity=0.040 Sum_probs=236.1
Q ss_pred HHHHHHcCCCCccHHHHhhhCCCCCCHHHH----HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 003353 138 IVEVVNRWKWGPELETQLDKLQFVPKMVHI----TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF 213 (827)
Q Consensus 138 ~~~~l~~~~~~~~~~~~l~~~~~~p~~~~~----~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~ 213 (827)
....+.......++..+..+..+.|....+ ...+..+++++.|++=-....+.. +.=+..|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccH
Confidence 344444455556677777888888773322 555667899988887666666653 22356899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH-----HHHHcCChhH
Q 003353 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT-----LFLNKGLPYK 288 (827)
Q Consensus 214 ~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~-----~~~~~g~~~~ 288 (827)
++|+.-|.+-++.. +.+...++-+.+++.... .+-+.| -++..|..+.. .+...-.+..
T Consensus 87 ~eA~~ay~~GL~~d----~~n~~L~~gl~~a~~~~~---~~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~ 150 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD----PSNKQLKTGLAQAYLEDY---AADQLF---------TKPYFHEKLANLPLTNYSLSDPAYVK 150 (539)
T ss_pred HHHHHHHHHHhhcC----CchHHHHHhHHHhhhHHH---Hhhhhc---------cCcHHHHHhhcChhhhhhhccHHHHH
Confidence 99999999999987 889999999999882111 111111 12222222111 1111111111
Q ss_pred HHHHHHHhHhC-CccCCHHHHHHHHHHHHHcCCHHHH-----------------------HHHHHHHHH-cCCCCCHHHH
Q 003353 289 AFEIYESMEKG-ECSLDGSTYELMIPSLAKSGRLDAA-----------------------IKLFQEMKE-RNFRPSFNIF 343 (827)
Q Consensus 289 A~~~~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A-----------------------~~~~~~m~~-~g~~p~~~t~ 343 (827)
-++.+..-... +...+ ...++.+.......+.- .....++.+ ....--..-.
T Consensus 151 ~l~~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 151 ILEIIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 11111100000 00000 00111111100000000 000000000 0000001224
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHH
Q 003353 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF-------TMI 416 (827)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-------~~l 416 (827)
..+.++..+..+++.|.+-++...... -++.-++....+|...|.+.+....-....+.|-. ...-| ..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 556777777888888888888887654 35555666777888888887777776666555432 11222 223
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 003353 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS-TYTALLTLLAKRKL 495 (827)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~g~ 495 (827)
..+|.+.++++.|...|++.....-.|+. ..+....++++...+...- +.|... -...-...+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccC
Confidence 44677778888888888887654333332 3344455666666665554 344432 12222556778999
Q ss_pred HHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLET 574 (827)
Q Consensus 496 ~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 574 (827)
+..|...|.++++..+.....|.+..-+|.+.|.+..|++-.+...+.+ |+ ...|.-=..++....++++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886666788899999999999999999888887763 33 22333333344455678888888888
Q ss_pred HHHCC
Q 003353 575 YVESA 579 (827)
Q Consensus 575 m~~~g 579 (827)
.++.+
T Consensus 452 ale~d 456 (539)
T KOG0548|consen 452 ALELD 456 (539)
T ss_pred HHhcC
Confidence 87765
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.48 E-value=0.00077 Score=74.62 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=174.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFL 281 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~ 281 (827)
+.|+.|.+.|....|.+....=.. ...|......+..++.+...+++|-++|+++.. |+. -+.+|.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~-----l~~de~il~~ia~alik~elydkagdlfeki~d----~dk-----ale~fk 685 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE-----LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FDK-----ALECFK 685 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH-----hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HHH-----HHHHHH
Confidence 346778888888777665432111 144566666666666666666666666666553 111 112222
Q ss_pred HcCChhHHHHHHHHh----------------HhCCccCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 282 NKGLPYKAFEIYESM----------------EKGECSLDG--------STYELMIPSLAKSGRLDAAIKLFQEMKERNFR 337 (827)
Q Consensus 282 ~~g~~~~A~~~~~~m----------------~~~g~~pd~--------~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 337 (827)
+..-+.+|+++-+-. ...| +.|. ......+.+....+.|.+|..+++.+.+....
T Consensus 686 kgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~ 764 (1636)
T KOG3616|consen 686 KGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTA 764 (1636)
T ss_pred cccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccc
Confidence 222222222221111 0000 0000 01112334556677888888888877766432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003353 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMII 417 (827)
Q Consensus 338 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 417 (827)
..-|..+.+-|+..|+++-|+++|-+.- .++-.|..|.++|++++|.++-.+.. |.......|-+-.
T Consensus 765 --s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiaka 831 (1636)
T KOG3616|consen 765 --SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKA 831 (1636)
T ss_pred --cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhH
Confidence 2446677788888888888888886543 24556778888888888888766543 4444556666666
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003353 418 ESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497 (827)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 497 (827)
.-+-+.|++.+|.++|-.+.. |+. .|.+|-+.|..+..+++.++-... .-..|-..+..-+...|++.
T Consensus 832 edldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 832 EDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred HhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChh
Confidence 667778888888887765543 343 467788888888877777654321 11235556667777888888
Q ss_pred HHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHH
Q 003353 498 VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLR 538 (827)
Q Consensus 498 ~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~ 538 (827)
.|++-|-++-+ |.+-+.+|-..+-+++|.++-+
T Consensus 900 aae~~flea~d--------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 900 AAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHh
Confidence 88877755433 5566777777787887776654
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0034 Score=72.30 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHD 226 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~ 226 (827)
.|+..-+..+.++...+-..+-.+++++++-.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~ 1013 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLD 1013 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC
Confidence 34455555566666666666666666666543
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=0.00013 Score=86.41 Aligned_cols=234 Identities=10% Similarity=0.084 Sum_probs=169.3
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC-GHR---PSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
|++..... +.+...|-..|......++.++|.++.++++.. +++ --...|.++++.-..-|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 33444332 455677888888888888999999998888742 111 1134677777777777888888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC---H
Q 003353 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG---L 480 (827)
Q Consensus 404 ~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~ 480 (827)
.. -....|..|...|.+.+.+++|.++++.|.++ +.-....|...++.+.++.+-+.|..++.+.++. -|. .
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv 1600 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHV 1600 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhH
Confidence 42 12456788888899999999999999998865 2246778888888888888888899998888873 343 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHH
Q 003353 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN--FIVRQLFES 558 (827)
Q Consensus 481 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~ 558 (827)
......+..-.+.|+.+.+..+|+..+...++....|+..|++=.+.|+.+.+..+|++..+.++.|-. ..|...+.-
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 344445555567889999999999888887777778888889888999999999999998888877653 244444433
Q ss_pred HHHcCCHHH
Q 003353 559 CMKNALYES 567 (827)
Q Consensus 559 ~~~~g~~~~ 567 (827)
=..+|+-+.
T Consensus 1681 Ek~~Gde~~ 1689 (1710)
T KOG1070|consen 1681 EKSHGDEKN 1689 (1710)
T ss_pred HHhcCchhh
Confidence 334454443
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.38 E-value=4.4e-07 Score=61.07 Aligned_cols=31 Identities=45% Similarity=0.835 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 371 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
+.||..|||+||++||+.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 112
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.011 Score=67.79 Aligned_cols=481 Identities=12% Similarity=0.049 Sum_probs=258.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDV--LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~--l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
+++..|++-.....++. |+. .|..++.+ +.+.|+.++|..+++.....+ ..|..+...+-..|...++.+
T Consensus 23 ~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~----~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK----GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC----CCchHHHHHHHHHHHHHhhhh
Confidence 56777888888888875 332 23333333 468899999998888776655 568888999999999999999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC----------HH
Q 003353 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR----------LD 322 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~----------~~ 322 (827)
+|..+|++..+.. |+..-...+..+|++.+.+.+-.++--+|-+. .+-+.+.+-++++...+... ..
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999888653 56666677777888887776544333333332 33466777777776655322 33
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 323 AAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYM-EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400 (827)
Q Consensus 323 ~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 400 (827)
-|.+.++.+.+.+ --.+..-.-.-...+-..|++++|..++. ...+.-..-+...-+--+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4566666666554 11111112222334456788899988884 333332333455556677788888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHh----------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHcCCH
Q 003353 401 MRIAGFRPNFGLFTMIIESHAK----------------SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH---ASSGQV 461 (827)
Q Consensus 401 m~~~g~~pd~~t~~~li~~~~~----------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~---~~~g~~ 461 (827)
+...|.. | |...++.+++ .+..+...+..++...... -..|-+-+.++ -.-|+.
T Consensus 252 Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~gd~ 324 (932)
T KOG2053|consen 252 LLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLIGDS 324 (932)
T ss_pred HHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhcccCCh
Confidence 8887643 2 3333332221 1222333332222222111 11122222222 234666
Q ss_pred hHHHHHHHHHHHC----------------------------CCCCCHH-------HHHHHHHHHHhcCC-----HHHHHH
Q 003353 462 DSAMKLYNSMTSA----------------------------GLRPGLS-------TYTALLTLLAKRKL-----VDVAAK 501 (827)
Q Consensus 462 ~~A~~l~~~m~~~----------------------------g~~pd~~-------t~~~li~~~~~~g~-----~~~A~~ 501 (827)
++++..|-+-... +..++.. .+...+..-...|. -+.-..
T Consensus 325 ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 325 EEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 6654443221100 0011111 01111111111221 222223
Q ss_pred HHHHHH---HCCC------Cch----------HhHHHHHHHHHHcCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003353 502 ILLEMK---TMGY------SVD----------VSASDVLMVYIKDGSVD---HALRWLRFMGSSGIRTNNFIVRQLFESC 559 (827)
Q Consensus 502 l~~~m~---~~g~------~~~----------~~~~~li~~y~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 559 (827)
++.+.. ++|. -|. .+.+.|+++|-+.++.. +|+-+++.-.... ..|..+--.++..|
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY 483 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHH
Confidence 332221 2331 111 13456778888877765 4444444444322 22344555677888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc----CchhHHHhhhccCCccccchh
Q 003353 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK----HKAHAFLCGLFTGPEQRKQPV 635 (827)
Q Consensus 560 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~----~~~~~~~~~l~~~~~~~~~~~ 635 (827)
+-.|-...|.++++.+--..+.-|..-|. +..-+.-.|++..+...++.....- .....++.... ..+ .
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY---r~g---~ 556 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY---RRG---A 556 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH---HcC---c
Confidence 88898888888888886666666655543 3345556677888777766543321 11222221111 001 1
Q ss_pred HHHHHHH---hhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHH
Q 003353 636 LSFVREF---FHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVA 682 (827)
Q Consensus 636 ~~~~~~~---~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~ 682 (827)
.+.+.++ -+.+.... --....+-|..++.++..++.++=...++.+
T Consensus 557 ySkI~em~~fr~rL~~S~-q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~ 605 (932)
T KOG2053|consen 557 YSKIPEMLAFRDRLMHSL-QKWACRVENLQLSLLCNADRGTQLLKLLESM 605 (932)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCcHHHHHHHHhcc
Confidence 1112221 11121111 0112334578888888888888776666554
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=2.3e-05 Score=87.07 Aligned_cols=215 Identities=13% Similarity=0.112 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421 (827)
Q Consensus 342 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 421 (827)
.-..+...+...|-...|..+|++.. .|.-.|.+|+..|+..+|..+..+-.+ -+||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 33344455555555555555555443 244445555555555555555555444 2345555555555554
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003353 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAA 500 (827)
Q Consensus 422 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~ 500 (827)
...-+++|.++++....+ .-..+.......++++++.+.|+.-.+ +.|- ..+|-.+..+..+.++++.|.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHH
Confidence 444455555555543321 000111111224555555555555444 2222 234444444445555555555
Q ss_pred HHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 501 KILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 501 ~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
+.|...+...+.....|+++-.+|.+.|+..+|...+++..+.+..++. +|...+-...+-|.+++|++.+.++.+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-IWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-eeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5555555544333345555555566666666666666555555533332 222222334455566666665555543
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.35 E-value=6.1e-07 Score=60.36 Aligned_cols=32 Identities=31% Similarity=0.643 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003353 265 DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296 (827)
Q Consensus 265 g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m 296 (827)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.32 E-value=0.00012 Score=75.14 Aligned_cols=185 Identities=11% Similarity=0.013 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH-
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF---SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT- 270 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 270 (827)
.....+..++..+.+.|++++|...|+++.... +.+. .++..+..+|.+.|++++|...++++.+..+....
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 455677777788888888888888888887765 3332 46677788888888888888888888765543111
Q ss_pred -HHHHHHHHHHHHc--------CChhHHHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003353 271 -QSYNVLMTLFLNK--------GLPYKAFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF 340 (827)
Q Consensus 271 -~~~n~li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 340 (827)
.++..+..++.+. |++++|.+.|+++.... |+. ..+..+... .. .... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~~------~~-------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRNR------LA-------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHHH------HH--------
Confidence 2444445555443 55666666666665532 222 122111111 00 0000 00
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGH--RPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
.....+...|.+.|++++|...+++..+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0112344455666666666666666654321 11234555666666666666666666665554
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.29 E-value=0.00038 Score=82.54 Aligned_cols=203 Identities=14% Similarity=0.175 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKER-NFRP---SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 382 (827)
.|-..|.-....+++++|+++.+++... ++.- -...|.++++.-..-|.-+...++|+++.+.. -....|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHH
Confidence 4444444455555555555555554432 1110 01234444444444454555555555555421 1123444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCH
Q 003353 383 ESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PTPSTYSCLLEMHASSGQV 461 (827)
Q Consensus 383 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~ 461 (827)
..|.+.+.+++|-++++.|.+. +.-....|...++.+.+..+-+.|..++.+..+.=.+ -.+......+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5555555555555555555543 1123444555555555555555555555554432110 1222333333444455555
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch
Q 003353 462 DSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514 (827)
Q Consensus 462 ~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 514 (827)
+++..+|+..+.. .| -...|+..|+.-.+.|+.+.++.+|++++..++.+.
T Consensus 1617 eRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 5555555555442 12 223555555555555555555555555555555444
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=5.4e-05 Score=84.24 Aligned_cols=218 Identities=13% Similarity=0.062 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451 (827)
Q Consensus 372 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 451 (827)
+|--..-..+...+.+.|-..+|+.+|++... |.-+|.+|+..|+..+|..+..+-.++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 33333344455556666666666666665432 344566666666666666666655552 3566666666
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
.+......-+++|.++.+....+ .-..+.......++++++.+.|+.-.+..+--..+|..+..+..++++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 66555555566666666554331 11111111222566666666666666654444456666666666666666
Q ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 532 HALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 532 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l 610 (827)
.|.+.|..... ..|| ...|+.+-.+|.+.|+-.+|...+.+..+.+. -+...|..-+......|.+++|.+...++
T Consensus 537 ~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 66666666653 3344 33566666666666666666666666666552 24444444444555666666666655543
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=0.00022 Score=83.33 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=130.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHH
Q 003353 193 YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS 272 (827)
Q Consensus 193 ~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 272 (827)
++.++..+..|..+..+.|++++|..+++...+.. |.+..+...++..+.+.+++++|+..+++..+..+. +...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHH
Confidence 57889999999999999999999999999999987 888999999999999999999999999999988765 7788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003353 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347 (827)
Q Consensus 273 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 347 (827)
.+.+..++.+.|++++|.++|++....+ +-+..++..+..++.+.|+.++|...|++..+.- .+....|+.++
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8889999999999999999999999843 2357899999999999999999999999998764 44445555544
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00034 Score=69.10 Aligned_cols=236 Identities=12% Similarity=0.130 Sum_probs=134.9
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
-+.-.|++..++..-...... +-+...-..+-++|...|.+..... +..... .|.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 334456666655544443322 1234444445566666665443322 222222 2333333333333333444333
Q ss_pred HH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 359 SM-KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437 (827)
Q Consensus 359 A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 437 (827)
-. ++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 334444443333343333334456777888888887776521 23333333555667778888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 438 RAGFLPTPSTYSCLLEMHAS----SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 438 ~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
+- -+..|.+.|..++.+ .+++.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++++....+.
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 64 255666666666654 34578888888888764 56777888888888888888888888888888776665
Q ss_pred hHhHHHHHHHHHHcCCH
Q 003353 514 DVSASDVLMVYIKDGSV 530 (827)
Q Consensus 514 ~~~~~~li~~y~~~g~~ 530 (827)
..+..++|..-...|..
T Consensus 241 petL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 55555555544444443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.21 E-value=7.7e-05 Score=73.74 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=80.0
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 003353 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250 (827)
Q Consensus 171 l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (827)
+...|+.+.++.+...+...+ +.+.......+....+.|++.+|...|.+..... ++|..+|+.+..+|.+.|+
T Consensus 76 ~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~----p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 76 LYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA----PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC----CCChhhhhHHHHHHHHccC
Confidence 334455555554444433321 3344444445555566666666666666655554 5556666666666666666
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 330 (827)
+++|..-|.+..+..+. +....|.|.-.|.-.|+.+.|..++......+.. |...-..+.......|++++|..+...
T Consensus 150 ~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666666555554332 4444555555555556666666655555544322 344444455555555555555555443
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.20 E-value=0.00017 Score=73.84 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003353 519 DVLMVYIKDGSVDHALRWLRFMGSSGI-RTN-NFIVRQLFESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 519 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
.+...|.+.|++++|...+++..+... .|. ...+..+..++.+.|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344556667777777777776665421 122 345556666677777777777776666543
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.018 Score=62.63 Aligned_cols=411 Identities=13% Similarity=0.147 Sum_probs=240.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
|.|..+|+.||.-+... .++++.+.++++...-+ -....|..-|..-....+++....+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP-SSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 89999999999988777 99999999999986433 256789999999999999999999999998753 356667666
Q ss_pred HHHHHH-cCCHHH----HHHHHHHHH-HcCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCCCC--
Q 003353 312 IPSLAK-SGRLDA----AIKLFQEMK-ERNFRP-SFNIFASLVDS---------MGKAGRLDTSMKVYMEMQGCGHRP-- 373 (827)
Q Consensus 312 i~~~~~-~g~~~~----A~~~~~~m~-~~g~~p-~~~t~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p-- 373 (827)
|.--.+ .|+... ..+.|+-.. +.|+.+ +...|+..+.. |....+++...++|.++...-+..
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 653332 233332 334444433 445332 22346655543 334456778888888887532111
Q ss_pred ----CHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHHHhcCC
Q 003353 374 ----SAPMYVSLIESY-------AKAGKLDTALRLWDEMRI--AGFRPNFGL---------------FTMIIESHAKSGK 425 (827)
Q Consensus 374 ----~~~~~~~li~~~-------~~~g~~~~A~~l~~~m~~--~g~~pd~~t---------------~~~li~~~~~~g~ 425 (827)
|-..|..=|+.. -+...+..|.++++++.. .|+.-+..+ |-.+|+- .+.+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 112222212211 123356777777777654 343221111 3223321 11111
Q ss_pred hh---------HHHHHHHHH-HHcCCCCCHHHH-HH----HHHHHHHcCC-------HhHHHHHHHHHHHCCCCCCHHHH
Q 003353 426 LD---------IAMSIFTDM-ERAGFLPTPSTY-SC----LLEMHASSGQ-------VDSAMKLYNSMTSAGLRPGLSTY 483 (827)
Q Consensus 426 ~~---------~A~~~~~~m-~~~g~~p~~~t~-~~----li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~t~ 483 (827)
+. ...-+++.. .-.+..|++.-. .. .-+.+...|+ .+++..++++.++.-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111122221 122333332110 01 1112233333 45666667666553223344444
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHHC-CCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 003353 484 TALLTLLAKR---KLVDVAAKILLEMKTM-GYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT-NNFIVRQLFES 558 (827)
Q Consensus 484 ~~li~~~~~~---g~~~~A~~l~~~m~~~-g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~ 558 (827)
..+.+--... ...+.....++++... ..+++.+|..++..-.+...++.|..+|.++.+.+..+ +..+.++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 4433321111 1355556666666543 44566778888888888888899999999998887777 56677777665
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHH
Q 003353 559 CMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSF 638 (827)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 638 (827)
|| .++.+-|.++|+--++. ...+..--...++-+.+.++...++.+|+....+..
T Consensus 412 ~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l----------------------- 466 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL----------------------- 466 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC-----------------------
Confidence 54 47888888888865543 222444456677788888888888888887654311
Q ss_pred HHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003353 639 VREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYE 684 (827)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~ 684 (827)
.++-..-+|+.+++.=...|+++.+.++=++...
T Consensus 467 ------------~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 ------------SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ------------ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 0001123577788888888888888877655543
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.18 E-value=6.7e-05 Score=74.23 Aligned_cols=120 Identities=12% Similarity=0.205 Sum_probs=59.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH-HHHcCC--h
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL-FLNKGL--P 286 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~-~~~~g~--~ 286 (827)
.++.+++...++..++.. |.+...|..+...|...|++++|...|++..+..+. +...+..+..+ +...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~----P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN----PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCc
Confidence 344445555555555444 555555555555555555555555555555554433 44444444443 234444 2
Q ss_pred hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 287 ~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
++|.+++++..+.... +..++..+...+.+.|++++|...++++.+..
T Consensus 127 ~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 127 PQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555555555544322 34445555555555555555555555555443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00031 Score=69.57 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc
Q 003353 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318 (827)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~ 318 (827)
..+-..+.-.|+-+.+..+........+ .|....+..+....+.|++.+|+..|++.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 4444455555555555555544333222 24444444555555566666666666655543 234555666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLW 398 (827)
Q Consensus 319 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 398 (827)
|+.++|..-|.+..+.. .-+....|.|.-.|.-.|+.+.|..++......+ ..|...-..+.......|++++|..+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666665555543 2333445555555555666666666665555443 224444444555555556666655554
Q ss_pred HH
Q 003353 399 DE 400 (827)
Q Consensus 399 ~~ 400 (827)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.14 E-value=9.6e-05 Score=73.09 Aligned_cols=120 Identities=8% Similarity=0.121 Sum_probs=74.9
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHH-HHcCC--HHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL-AKSGR--LDAA 324 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~-~~~g~--~~~A 324 (827)
.++.+++...++...+..+. |...|..+...|...|++++|...|++..+... -+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44556666666666655543 666677777777777777777777776666432 2455555555543 45555 3677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003353 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG 370 (827)
Q Consensus 325 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 370 (827)
.+++++..+.+ +.+..++..+...+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777776665 4455666666666667777777777777766554
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.13 E-value=0.00015 Score=67.84 Aligned_cols=109 Identities=11% Similarity=-0.017 Sum_probs=80.9
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260 (827)
Q Consensus 181 l~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (827)
...|+.+.+.+ |+ .+......+.+.|++++|...|+..+... |.+..+|..+..++.+.|++++|...|+.
T Consensus 13 ~~~~~~al~~~---p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSVD---PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ----PWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHcC---HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555532 33 34556677778888888888888887776 77788888888888888888888888888
Q ss_pred hHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 261 VLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 261 m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
.....+. +...|..+..++...|++++|++.|+...+.
T Consensus 84 Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 84 ALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8876653 7777778888888888888888888887764
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.13 E-value=0.0012 Score=78.10 Aligned_cols=240 Identities=11% Similarity=0.041 Sum_probs=167.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+.+...+..|+..+...+++++|.++.+..++.. |.....|-.+...+.+.++.+++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~----P~~i~~yy~~G~l~~q~~~~~~~~lv---------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH----KKSISALYISGILSLSRRPLNDSNLL---------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CcceehHHHHHHHHHhhcchhhhhhh----------------
Confidence 4456788899999989999999999999887775 66666666666677777776655444
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
.++.......++.-...+.+.|... .-+...+..+..+|-+.|+.++|.++++++.+.+ +-|+.+.|.+...|+..
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 2333333444454444444455543 2355688888999999999999999999999887 67888899999999988
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 433 (827)
++++|++++.+.... +...+++.++.+++.++....+. |...+-.+ .
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i----------------~ 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI----------------E 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHH----------------H
Confidence 999999988887742 66777899999999998875432 22222222 2
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003353 434 TDMERA-GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491 (827)
Q Consensus 434 ~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 491 (827)
+.+... |..--+.++-.+-..|...++++++..+++.+++..- -|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 222211 2222445566677778888899999999999988422 24456666666665
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=0.00089 Score=79.14 Aligned_cols=190 Identities=13% Similarity=0.119 Sum_probs=123.1
Q ss_pred HHHHHHHHHHcCCCCccHHHHhhhCCCCCCHHH----HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 003353 134 AVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH----ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNE 209 (827)
Q Consensus 134 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~p~~~~----~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~ 209 (827)
...++..++..-.| ++.......|+... ++..+...+++++|+++.+.....+ +-....|..+...+.+
T Consensus 5 ~~~~~~~~~~ee~~-----~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q 77 (906)
T PRK14720 5 DIDKLTSLLNEEKW-----TRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLS 77 (906)
T ss_pred hHHHHHHHhhhhhh-----hhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHh
Confidence 45666777765444 34444555666544 4666668899999999999877764 3334455555557778
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A 289 (827)
.++.+++..+ .+.. ......++.-...+.+.|.+.+ -+..++-.+..+|-+.|+.++|
T Consensus 78 ~~~~~~~~lv--~~l~------------------~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka 135 (906)
T PRK14720 78 RRPLNDSNLL--NLID------------------SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKL 135 (906)
T ss_pred hcchhhhhhh--hhhh------------------hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHH
Confidence 8887666665 3332 2233333333333333444432 2445677788888888888888
Q ss_pred HHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 290 ~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
.++++++++.. +-|..+.|.+...|+.. ++++|.+++.++..+ |...+++.++.+++.++...
T Consensus 136 ~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 136 KGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888888765 33677788888888888 888888888777654 44555666677777666654
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0022 Score=63.54 Aligned_cols=252 Identities=14% Similarity=0.100 Sum_probs=156.3
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHH
Q 003353 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322 (827)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 322 (827)
+-+.-.|.+..++..-....... -++..-..+-++|...|.+..... +.... -.|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhH
Confidence 34445566666655544433321 233334445566777776543322 22221 1233333333333333334433
Q ss_pred H-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 323 A-AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 323 ~-A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
. ..++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33455555555444444444455667889999999999887622 3333333345567888899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 003353 402 RIAGFRPNFGLFTMIIESHAK----SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR 477 (827)
Q Consensus 402 ~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 477 (827)
.+- -+..|.+-|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++.+.+.-
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~- 238 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA- 238 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-
Confidence 874 266778877777765 45788999999999874 567888999999999999999999999999988643
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCC
Q 003353 478 PGLSTYTALLTLLAKRKLV-DVAAKILLEMKTMGY 511 (827)
Q Consensus 478 pd~~t~~~li~~~~~~g~~-~~A~~l~~~m~~~g~ 511 (827)
-++.+...++..-...|.- +-..+.+.++....+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 2556666666555455543 444555566655433
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.039 Score=63.65 Aligned_cols=457 Identities=14% Similarity=0.097 Sum_probs=242.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCccHHHHhhhCCC-CCCHHH----HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHH
Q 003353 127 KPFLNASAVAKIVEVVNRWKWGPELETQLDKLQF-VPKMVH----ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYV 201 (827)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-~p~~~~----~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~ 201 (827)
+|....+.+.+++.+++.....++. ..|+.... .++... +..++..++..++|..+++.+.... |+.....
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~ 114 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLY 114 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHH
Confidence 3665667778888888877755555 55555532 233222 3555667788888999999888864 5667777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHhHhCC-CCCCH
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD----------KLEMSYCCFKKVLDSD-CKIDT 270 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g-~~p~~ 270 (827)
.+..+|+|.+++.+-.+.--++.+.- |.+.+.+=++++.+.... -..-|.+.++.+.+.+ .--+.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~----pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~ 190 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNF----PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE 190 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC----CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence 77788888888876666555555543 445554444555554432 1334666777776543 11111
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHH-HhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYE-SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDS 349 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~-~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 349 (827)
.-...-...+...|.+++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++...| ..| |...++.
T Consensus 191 aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-~Dd---y~~~~~s 266 (932)
T KOG2053|consen 191 AEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-NDD---YKIYTDS 266 (932)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC-Ccc---hHHHHHH
Confidence 111122233445678888888883 33333333345555667777888888888888888888877 233 3333332
Q ss_pred HH----------------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCCCH
Q 003353 350 MG----------------KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA---KAGKLDTALRLWDEMRIAGFRPNF 410 (827)
Q Consensus 350 ~~----------------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~ 410 (827)
+. ..+..+...+...+..... ....|-+-+.++. .-|+.+++.-.|-+- -|-.|
T Consensus 267 v~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp-- 339 (932)
T KOG2053|consen 267 VFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP-- 339 (932)
T ss_pred HHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc--
Confidence 22 1222333333333333221 1122333333333 346777665444321 12111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCC-----HhHHHHHHHHHH---HC-
Q 003353 411 GLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS-------TYSCLLEMHASSGQ-----VDSAMKLYNSMT---SA- 474 (827)
Q Consensus 411 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~li~~~~~~g~-----~~~A~~l~~~m~---~~- 474 (827)
.|..=+..|...=..+.-..++...... .++.. -+.+.+..-.-.|. .+.-..++.+.. ++
T Consensus 340 -cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g 416 (932)
T KOG2053|consen 340 -CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG 416 (932)
T ss_pred -HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc
Confidence 1111122222222222222222222211 00000 01112222222221 122223332221 12
Q ss_pred -----CCCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHH
Q 003353 475 -----GLRPGLS---------TYTALLTLLAKRKLVD---VAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWL 537 (827)
Q Consensus 475 -----g~~pd~~---------t~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~ 537 (827)
++-|+.. +-+.|++.+.+.++.. +|+-+++.-.......-.+--.+|..|+-.|-+..|.++|
T Consensus 417 ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y 496 (932)
T KOG2053|consen 417 LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELY 496 (932)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHH
Confidence 2333332 3456778888877765 4555555555544433345567888999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 538 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
+.+--+.++.|..-|. +..-+...|++..+...++...+.--..-..+-..+..|| +.|.+.+..+++
T Consensus 497 ~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~ 564 (932)
T KOG2053|consen 497 KTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEML 564 (932)
T ss_pred HhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHH
Confidence 9998888888876663 3356677888888888877665421111112223344444 557776665554
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.08 E-value=0.00043 Score=80.96 Aligned_cols=147 Identities=12% Similarity=0.023 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.++.++-.|.....+.|++++|..+++...+..+. +...+..+...+.+.+++++|+..+++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 777999999999999999999999999999987654 6777888899999999999999999999886432 56677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 382 (827)
..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+.- .+-...|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 888999999999999999999854 4567899999999999999999999999998653 34445555443
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.03 E-value=0.00018 Score=66.53 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=74.0
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 184 f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
++.+...+ +.+......+...+.+.|++++|.+.++.+...+ +.+...+..+...|.+.|++++|...++...+
T Consensus 6 ~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 6 LKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD----PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred HHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444443 2344555566667777777777777777777665 66777777777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 264 ~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
.++. +...|..+...|...|++++|.+.|++..+.
T Consensus 80 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 80 LDPD-DPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred cCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5533 5666666777777777777777777777663
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.02 E-value=0.00038 Score=65.09 Aligned_cols=95 Identities=5% Similarity=-0.097 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352 (827)
Q Consensus 273 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 352 (827)
+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+++.+.+ +.+..++..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3444555556666666666666655542 2245555566666666666666666666666554 4455556666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 003353 353 AGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~ 369 (827)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665554
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.0025 Score=68.52 Aligned_cols=200 Identities=14% Similarity=0.019 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003353 355 RLDTSMKVYMEMQGCG--HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 355 ~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
++.++...-+++...+ -.|+...+...+.+......-..+..++.+..+. .-...-|.. .-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHH
Confidence 3444444445554321 2345555566665544433333333333322221 111222332 3345567888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003353 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511 (827)
Q Consensus 433 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 511 (827)
++.+...- +-|+..+....+.+...++.++|.+.++.+.. ..|+ ....-.+..++.+.|+..+|..+++......+
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 88877653 23566666777888889999999999988888 5676 45666677788889999999999988888877
Q ss_pred CchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003353 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 512 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
.....|..|..+|...|+..+|..... .+|...|++++|+..+....+.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 777788888889999998888876544 3566778888888888887765
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.90 E-value=0.00084 Score=72.06 Aligned_cols=147 Identities=18% Similarity=0.126 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+.-......+.|++++|+..++.+++.. |.|+..+....+.+.+.++.++|.+.++++....+. ....+-.+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~----P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQ----PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHH
Confidence 33334445567888899999998888776 888888888888899999999999999888876533 2666777888
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
+|.+.|++.+|+.+++...... +-|...|..|..+|...|+..++.....+... ..|++++
T Consensus 383 all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHH
Confidence 8888899998888888887763 44788888899999998888888877766542 3577778
Q ss_pred HHHHHHHHHhC
Q 003353 359 SMKVYMEMQGC 369 (827)
Q Consensus 359 A~~~~~~m~~~ 369 (827)
|...+....+.
T Consensus 444 A~~~l~~A~~~ 454 (484)
T COG4783 444 AIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHh
Confidence 87777777654
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0063 Score=59.96 Aligned_cols=128 Identities=10% Similarity=0.049 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 003353 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 201 ~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~ 280 (827)
..++-+....|+.+.|...++.+...- |.+..+-..-.-.+-..|.+++|.++++.+.+.++. |.++|-.-+...
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAil 130 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRF----PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhC----CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHH
Confidence 344444444555555555555544433 222222222222233344555555555555544432 444444444444
Q ss_pred HHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 281 LNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
-..|+--+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++.-.
T Consensus 131 ka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 4444444555444444433 3334555555555555555555555555555443
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.80 E-value=0.00081 Score=62.06 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=68.1
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 219 LFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 219 l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.+++++... +.+......+...+.+.|++++|.+.|+.+.+.++. +...|..+...+...|++++|...+++..+
T Consensus 5 ~~~~~l~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLGLD----SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHcCC----hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444443 445555666666666777777777777766665433 566666666666666777777777766655
Q ss_pred CCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 299 GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 299 ~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
.+ +.+..++..+...+...|++++|.+.++...+.
T Consensus 80 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 80 LD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred cC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 224555555666666666677766666666654
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.018 Score=56.81 Aligned_cols=186 Identities=14% Similarity=0.111 Sum_probs=103.1
Q ss_pred CChhHHHHHHHHhHh---CC-ccCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 284 GLPYKAFEIYESMEK---GE-CSLDGS-TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 284 g~~~~A~~~~~~m~~---~g-~~pd~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
.+.++.++++.+++. .| ..++.. .|..++-+....|+.+.|..+++++.++= +-+..+--.-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 456667777766653 23 445554 34455566667777777777777776652 3222222222223344677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
|+++|+.+.+.+ +.|.+++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+.+.|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777777665 445666665555555566666666666665554 334666666666666666666666666666654
Q ss_pred cCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHH
Q 003353 439 AGFLPTPSTYSCLLEMHASSG---QVDSAMKLYNSMTS 473 (827)
Q Consensus 439 ~g~~p~~~t~~~li~~~~~~g---~~~~A~~l~~~m~~ 473 (827)
..+ .+..-+..+.+.+.-.| +++-|.+.|.+.++
T Consensus 183 ~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 321 12222333333332222 34455555555555
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.69 E-value=6.9e-05 Score=50.72 Aligned_cols=33 Identities=39% Similarity=0.732 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN 409 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 409 (827)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.67 E-value=6.4e-05 Score=50.89 Aligned_cols=33 Identities=30% Similarity=0.682 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 479 (827)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.60 E-value=0.0034 Score=58.82 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH--HHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT--QSY 273 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 273 (827)
.|..++..+ ..++...+...++.+.... +.+ ..+.-.+...+...|++++|...|+.+......++. ...
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 344444443 3566666666666666554 333 223333445566666666666666666654422221 233
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQE 330 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 330 (827)
..|...+...|++++|+..++...... .....+.....++.+.|+.++|...|+.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344555555666666666665432221 2233444555556666666666665554
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.57 E-value=9.1e-05 Score=49.86 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhCCccC
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p 303 (827)
+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.56 E-value=0.00011 Score=49.43 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 408 (827)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.54 E-value=0.0025 Score=69.25 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=79.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003353 415 MIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK 494 (827)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 494 (827)
+|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++.++. .+-+...+..-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34444555667777777777777653 33 3334666666667777777777777753 1224445555555667777
Q ss_pred CHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 495 LVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 495 ~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
+++.|.++.+++.+..+..-.+|..|..+|.+.|++++|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77888888877777655544577777777777777777777776655
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.53 E-value=0.0026 Score=69.04 Aligned_cols=127 Identities=13% Similarity=0.201 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
-..-..|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++++..... +-|......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344555666666788888888888888754 34 33446777777777778888888877642 2355666666667
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 367 (827)
+.+.++++.|.++.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 778888888888888887764 4555688888888888888888887777665
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.50 E-value=0.0036 Score=58.64 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=35.6
Q ss_pred HHHHHcCChhHHHHHHHHhHhCCccCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 278 TLFLNKGLPYKAFEIYESMEKGECSLDG--STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
..+...|++++|.+.|+........|+. ...-.+...+...|++++|+..++......+ ....+....+.|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCC
Confidence 3444455555555555555443311111 1222233444445555555555443222211 22333444444445555
Q ss_pred HHHHHHHHH
Q 003353 356 LDTSMKVYM 364 (827)
Q Consensus 356 ~~~A~~~~~ 364 (827)
.++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555544444
No 147
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.26 Score=55.33 Aligned_cols=238 Identities=11% Similarity=0.110 Sum_probs=138.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHhHh
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVI----------QYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li----------~~~~~~g~~~~A~~~~~~m~~ 263 (827)
.|-+..|..+.......-.++.|...|-+..... -+.....|- ..-+--|++++|+++|-++-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~------Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA------GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc------chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 5778899988888888888888888776543321 111111111 111224788888888877765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC-CccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003353 264 SDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG-ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342 (827)
Q Consensus 264 ~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 342 (827)
++ .-|..+.+.|+|-...++++.--.. .-..-...|+.+...++....|++|.+.|..-..
T Consensus 763 rD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 763 RD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred hh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 32 2355666777777666666432110 0001134677777788888888888877765321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 422 (827)
-...+.+|.+..++++-+.+-..+. -|....-.|..++.+.|.-++|.+.|-+- +. | -+.++.|..
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVE 890 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHH
Confidence 1235666666666666555554443 34555666777788888888887766432 11 1 134566777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHH--------------HHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 423 SGKLDIAMSIFTDMERAGFLPTPSTYS--------------CLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 423 ~g~~~~A~~~~~~m~~~g~~p~~~t~~--------------~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
.+++.+|.++-++..- |.+.|.- --|..+.+.|+.-+|-+++.+|.+
T Consensus 891 LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 7777777776654332 1222111 123445556666666666666654
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.46 E-value=0.0018 Score=54.45 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 003353 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 201 ~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~ 280 (827)
..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|.+.|+...+..+. +..++..+...+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHH
Confidence 344444555555555555555555443 333445555555555555555555555555443322 334444555555
Q ss_pred HHcCChhHHHHHHHHhH
Q 003353 281 LNKGLPYKAFEIYESME 297 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~ 297 (827)
...|++++|...+.+..
T Consensus 79 ~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 79 YKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 55555555555555444
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.40 E-value=0.0016 Score=70.89 Aligned_cols=122 Identities=16% Similarity=0.065 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS--DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 309 (827)
+.+......++..+....+++++..++.+.... ....-..|..++|+.|.+.|..++++++++.=...|+-||.+|+|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 555556666666666666677777777666643 111112344577777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777776666555556665555555554
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.35 E-value=0.0055 Score=54.78 Aligned_cols=100 Identities=13% Similarity=0.025 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCC--CHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI--DTQSYNVL 276 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~n~l 276 (827)
++..++..+.+.|++++|.+.|+.+..... +.+....++..+..++.+.|++++|...|+.+....+.. ...++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445555566666666666666666665431 001123445556666666666666666666665433221 13445555
Q ss_pred HHHHHHcCChhHHHHHHHHhHhC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
..++.+.|+.++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55666666666666666666554
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.30 E-value=0.0048 Score=67.19 Aligned_cols=91 Identities=13% Similarity=-0.022 Sum_probs=65.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
...+...|++++|+++|+++++.. +.+...|..+..+|.+.|++++|+..++++.+..+. +...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 455566777777777777777766 667777777777777777777777777777765543 566677777777777
Q ss_pred CChhHHHHHHHHhHhC
Q 003353 284 GLPYKAFEIYESMEKG 299 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~ 299 (827)
|++++|+..|++.++.
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777663
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.30 E-value=0.054 Score=57.04 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHC----CCCch---HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-----CHH-HHHHHHHHHH
Q 003353 494 KLVDVAAKILLEMKTM----GYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT-----NNF-IVRQLFESCM 560 (827)
Q Consensus 494 g~~~~A~~l~~~m~~~----g~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~ll~~~~ 560 (827)
|++++|.+.|+++.+. + .+. ..+..+...+.+.|++++|.++|++....-... +.. .+-..+-++.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL 207 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 5555555555555432 1 111 133445556666677777777776665432221 111 1112222445
Q ss_pred HcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHH
Q 003353 561 KNALYESAKPLLETYVESAAK----VDLVLYTSVLAHL 594 (827)
Q Consensus 561 ~~g~~~~A~~~~~~m~~~g~~----pd~~t~~~ll~a~ 594 (827)
..|++..|.+.|++.....+. ........|+.+|
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 567777777777776654321 1233445555554
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.29 E-value=0.0048 Score=51.72 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=6.7
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 003353 348 DSMGKAGRLDTSMKVYME 365 (827)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~ 365 (827)
..+...|++++|.+.+++
T Consensus 42 ~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 42 AAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 154
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.27 E-value=0.0043 Score=53.38 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=34.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 350 MGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAG--------KLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420 (827)
Q Consensus 350 ~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 420 (827)
+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..||+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444444444444444 444444444444444321 2233455555555555555555555555554
Q ss_pred H
Q 003353 421 A 421 (827)
Q Consensus 421 ~ 421 (827)
.
T Consensus 115 l 115 (120)
T PF08579_consen 115 L 115 (120)
T ss_pred H
Confidence 4
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.26 E-value=0.00028 Score=46.24 Aligned_cols=27 Identities=48% Similarity=0.816 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
|+++|++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444443
No 156
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.24 E-value=0.0036 Score=68.29 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003353 304 DGSTYELMIPSLAKSGRLDAAIKLFQEMKER--NFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381 (827)
Q Consensus 304 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 381 (827)
+......+++.+....+++++..++-+.... ....-..|..+++..|.+.|..++++.++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344444444444444444444444444332 11111123334444444444444444444444444444444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIES 419 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 419 (827)
|+.+.+.|++..|.++..+|...+.-.+..|+..-+.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 44444444444444444444443333333333333333
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.22 E-value=0.17 Score=53.22 Aligned_cols=58 Identities=16% Similarity=0.038 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCch-----H--hHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVD-----V--SASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-----~--~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
.+...+.+.|++++|.++|++......... . .+...+..+...|+...|.+.+++..+
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333444555555555555555544322211 0 122233344445555555555555543
No 158
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.21 E-value=0.0042 Score=53.43 Aligned_cols=72 Identities=24% Similarity=0.449 Sum_probs=38.5
Q ss_pred HhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003353 421 AKSGKLDIAMSIFTDMERAGF-LPTPSTYSCLLEMHASSG--------QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491 (827)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 491 (827)
...+++.....+|+.+.+.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..||+.++..+.
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 333444444444444444444 444444444444433321 23455666777777777777777777776654
Q ss_pred h
Q 003353 492 K 492 (827)
Q Consensus 492 ~ 492 (827)
+
T Consensus 116 k 116 (120)
T PF08579_consen 116 K 116 (120)
T ss_pred H
Confidence 3
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.19 E-value=0.00036 Score=45.70 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSA 474 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~ 474 (827)
+|+++|++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.14 E-value=0.013 Score=52.32 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=4.3
Q ss_pred cCCHHHHHHHHH
Q 003353 527 DGSVDHALRWLR 538 (827)
Q Consensus 527 ~g~~~~A~~~~~ 538 (827)
.|+.++|.+.++
T Consensus 89 ~~~~~~A~~~~~ 100 (119)
T TIGR02795 89 LGDKEKAKATLQ 100 (119)
T ss_pred hCChHHHHHHHH
Confidence 333333333333
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.029 Score=59.15 Aligned_cols=285 Identities=9% Similarity=-0.007 Sum_probs=130.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003353 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286 (827)
Q Consensus 207 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~ 286 (827)
+-+..++.+|+..+...+... +.+..-|..-...+...|++++|.--.+.-.+.... ....+...-.++...+..
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~----pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC----PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC----ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHH
Confidence 344556666666676666665 555666666666666677777665555444332111 111222233333333333
Q ss_pred hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 003353 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF-RPSFNIFASL-VDSMGKAGRLDTSMKVYM 364 (827)
Q Consensus 287 ~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~l-i~~~~~~g~~~~A~~~~~ 364 (827)
.+|.+.++ +...| ....++..++....... +|.-.+|..+ ..++...|++++|..+--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44443333 11111 01111222222221111 1222333333 234555666666666655
Q ss_pred HHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 003353 365 EMQGCGHRPSAPMYVSLIE--SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442 (827)
Q Consensus 365 ~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 442 (827)
...+.. ..+ .+...++ ++--.++.+.|...|++....+ ||...--.+ -...+.++.+.+.
T Consensus 194 ~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~----------~~~~k~le~~k~~--- 255 (486)
T KOG0550|consen 194 DILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA----------SMMPKKLEVKKER--- 255 (486)
T ss_pred HHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH----------hhhHHHHHHHHhh---
Confidence 555432 112 2222232 2233556666666666655532 332221111 1111122222222
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHH
Q 003353 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA---GLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASD 519 (827)
Q Consensus 443 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~ 519 (827)
.+-..+.|++.+|.+.|.+.+.. ...|+...|.....+..+.|+.++|+.--++..+.+..-...+..
T Consensus 256 ---------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ 326 (486)
T KOG0550|consen 256 ---------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLR 326 (486)
T ss_pred ---------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHH
Confidence 12344566666666666666652 233444555555555666777777776666665532211112222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC
Q 003353 520 VLMVYIKDGSVDHALRWLRFMGSS 543 (827)
Q Consensus 520 li~~y~~~g~~~~A~~~~~~m~~~ 543 (827)
-..++.-.+++++|.+-|++..+.
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233445556667777666666543
No 162
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.29 Score=51.96 Aligned_cols=270 Identities=14% Similarity=0.045 Sum_probs=146.5
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 003353 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250 (827)
Q Consensus 171 l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (827)
+....++..|+..+..+.... +-+...|..-+..+...|++++|.--.+.-++.. +.....+...-..+...+.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k----d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK----DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC----CCccccccchhhhhhhhHH
Confidence 345566777888888888763 4556667777777888888888887776666554 3344455555556666666
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCc-cCCHHHHHHHHH-HHHHcCCHHHHHHHH
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGEC-SLDGSTYELMIP-SLAKSGRLDAAIKLF 328 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~li~-~~~~~g~~~~A~~~~ 328 (827)
..+|.+.++ |...| ....|+..++....... +|...+|..+-. ++.-.|+.++|.+.-
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 666666655 11111 11222333333322211 133444443332 445567777777776
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------------HHHHHHHHHHcCCHHHHH
Q 003353 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPM-------------YVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 329 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------------~~~li~~~~~~g~~~~A~ 395 (827)
-...+.+ ..+......-..++.-.++.+.|...|++.+..+ |+... +..-.+-..+.|++..|.
T Consensus 193 ~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 193 IDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 6666554 2333333333344445677788888887777543 33221 111122344566677777
Q ss_pred HHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHhHHHHHHH
Q 003353 396 RLWDEMRIAG---FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPST---YSCLLEMHASSGQVDSAMKLYN 469 (827)
Q Consensus 396 ~l~~~m~~~g---~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~A~~l~~ 469 (827)
+.|.+.+... ..|+...|-....+..+.|+.++|+.-.++..+. |..- |..-..++...+++++|++-|+
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776665432 3344445555555556666666666666665553 2221 1111233444555666666666
Q ss_pred HHHH
Q 003353 470 SMTS 473 (827)
Q Consensus 470 ~m~~ 473 (827)
...+
T Consensus 346 ~a~q 349 (486)
T KOG0550|consen 346 KAMQ 349 (486)
T ss_pred HHHh
Confidence 5554
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.11 E-value=0.0082 Score=57.80 Aligned_cols=84 Identities=7% Similarity=-0.055 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
....|..++..+...|++++|...|++.+.... +......++..+...|.+.|++++|+..+++.....+. ...+++.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 345666777777778888888888888776531 00112346777777888888888888888777764322 3455555
Q ss_pred HHHHHH
Q 003353 276 LMTLFL 281 (827)
Q Consensus 276 li~~~~ 281 (827)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.09 E-value=0.01 Score=64.64 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=83.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+...++++.|++.|+.+.+.. +.+...|..+..++.+.|++++|+..+++++... +.+..+|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~----P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD----PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHH
Confidence 444556789999999999999976 5678899999999999999999999999999987 8889999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCC
Q 003353 248 ADKLEMSYCCFKKVLDSDCK 267 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~ 267 (827)
.|++++|+..|++..+..+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999986643
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.0061 Score=61.80 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=75.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
.+-+.+.++|.+|+..|.+.++.. |.|...|..-..+|++.|.++.|++-.+..+..++. -..+|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~----P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD----PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHcc
Confidence 445567778888888888888776 777777888888888888888887777777765432 456777788888888
Q ss_pred CChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
|++++|++.|++.++ +.|+-.+|-.=++.
T Consensus 163 gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 888888888877776 56776666554443
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.06 E-value=0.031 Score=51.91 Aligned_cols=85 Identities=11% Similarity=-0.155 Sum_probs=38.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK 569 (827)
Q Consensus 490 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 569 (827)
+...|++++|+.+|+.+....+.....|..|..++-..|++++|+..|......+. -|...+-.+..++.+.|+.+.|+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHH
Confidence 34445555555555554444443334444444444444555555555544444332 12233333334444445555554
Q ss_pred HHHHHH
Q 003353 570 PLLETY 575 (827)
Q Consensus 570 ~~~~~m 575 (827)
+.|+..
T Consensus 124 ~aF~~A 129 (157)
T PRK15363 124 KALKAV 129 (157)
T ss_pred HHHHHH
Confidence 444443
No 167
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.04 E-value=0.011 Score=57.52 Aligned_cols=88 Identities=16% Similarity=0.279 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC----------------ChhHHH
Q 003353 232 ISLFSAYNRVIQYLAKA-----DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG----------------LPYKAF 290 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g----------------~~~~A~ 290 (827)
..+-.+|..+++.|.+. |.++-....++.|.+.|+..|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 33455555555555433 556666666677777777777777777777664311 123455
Q ss_pred HHHHHhHhCCccCCHHHHHHHHHHHHHcC
Q 003353 291 EIYESMEKGECSLDGSTYELMIPSLAKSG 319 (827)
Q Consensus 291 ~~~~~m~~~g~~pd~~t~~~li~~~~~~g 319 (827)
+++++|...|+-||..|+..+++.+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 55555555555555555555555554443
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.02 E-value=0.012 Score=54.53 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=45.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 003353 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282 (827)
Q Consensus 203 li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~ 282 (827)
+...+...|++++|.++|+-+.... +.+..-|-.|..++-..|++++|+..|.......+. |...+-.+..++..
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3334445555555555555555444 444445555555555555555555555555544432 44444445555555
Q ss_pred cCChhHHHHHHHHhH
Q 003353 283 KGLPYKAFEIYESME 297 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~ 297 (827)
.|+.+.|.+.|+..+
T Consensus 116 lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 116 CDNVCYAIKALKAVV 130 (157)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555443
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.01 E-value=0.029 Score=54.22 Aligned_cols=92 Identities=9% Similarity=0.063 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
...+..+...+...|++++|...|++.++... .++ ....+..+...+.+.|++++|...+++..+..+. +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEE--DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 34667777777888888888888888876541 011 2457778888888888888888888887775433 5666666
Q ss_pred HHHHHHHcCChhHHHH
Q 003353 276 LMTLFLNKGLPYKAFE 291 (827)
Q Consensus 276 li~~~~~~g~~~~A~~ 291 (827)
+...+...|+...+..
T Consensus 112 lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 112 IAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHcCChHhHhh
Confidence 7777777666544443
No 170
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.99 E-value=0.0085 Score=58.14 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424 (827)
Q Consensus 391 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 424 (827)
-+-|++++++|...|+.||..|+..+++.+++.+
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 3446666666666666666666666666665444
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.97 E-value=0.14 Score=52.48 Aligned_cols=80 Identities=6% Similarity=-0.014 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAY---NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
...+-.....+.+.|++++|.+.|+++.... |.+..+. -.++.+|.+.+++++|...|++..+..+......|
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 3334344555667788888888888887765 3333333 44567777788888888888887776554333344
Q ss_pred HHHHHHH
Q 003353 274 NVLMTLF 280 (827)
Q Consensus 274 n~li~~~ 280 (827)
-..+.+.
T Consensus 108 a~Y~~g~ 114 (243)
T PRK10866 108 VLYMRGL 114 (243)
T ss_pred HHHHHHH
Confidence 4444443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.96 E-value=0.0013 Score=54.98 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 003353 211 RDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288 (827)
Q Consensus 211 g~~~~A~~l~~~m~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~ 288 (827)
|+++.|+.+++++.+.. +. +...+-.+..+|.+.|++++|..+++. .+.+.. +....-.+..++.+.|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~----~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELD----PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp T-HHHHHHHHHHHHHHH----CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHHC----CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHH
Confidence 45555555555555543 21 222333355555555555555555544 211111 22222233445555555555
Q ss_pred HHHHHH
Q 003353 289 AFEIYE 294 (827)
Q Consensus 289 A~~~~~ 294 (827)
|+++|+
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.96 E-value=0.19 Score=47.41 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CCHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-IDTQS 272 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~ 272 (827)
-|+...-..+..++.+.|++.||...|++....-. ..|....-.+.++....+++..|...++++.+..+. ....+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f---A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIF---AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc---CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 45655666777788888888888888888776554 667777777777777788888888888777664321 12223
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328 (827)
Q Consensus 273 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 328 (827)
--.+.+.|...|.+.+|...|+..... -|+...-......+++.|+.+++..-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 345566777777777788878777764 344443333334456666666555433
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.94 E-value=0.002 Score=53.88 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHCCCCc-h-HhHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 494 KLVDVAAKILLEMKTMGYSV-D-VSASDVLMVYIKDGSVDHALRWLRF 539 (827)
Q Consensus 494 g~~~~A~~l~~~m~~~g~~~-~-~~~~~li~~y~~~g~~~~A~~~~~~ 539 (827)
|+++.|+.+++++.+..+.. + ..+..+..+|.+.|++++|..++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444433311 1 1233344444444444444444444
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.85 E-value=0.47 Score=48.54 Aligned_cols=50 Identities=10% Similarity=-0.107 Sum_probs=22.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCch---HhHHHHHHHHHHcCCHHHHHHHHH
Q 003353 489 LLAKRKLVDVAAKILLEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLR 538 (827)
Q Consensus 489 ~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~y~~~g~~~~A~~~~~ 538 (827)
-|.+.|.+..|..-++.+++.-+... .....++.+|.+.|..++|.++..
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34444555555555555544322211 133444445555555555554444
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.83 E-value=0.048 Score=52.69 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID--TQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.+..+...+...|++++|...|++..+....+. ...|..+...+.+.|++++|...+++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444445555555555554443322111 23344444444444444444444444443
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.016 Score=58.89 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=84.9
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 003353 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250 (827)
Q Consensus 171 l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (827)
+...+++.+|+..|..+.... +.|+.-|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD----p~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID----PHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC----hHHHHHHHHHHHHHHccCc
Confidence 345678999999999999976 5788888999999999999999999999999987 8888999999999999999
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+++|++.|++.++.. |+-.+|-.
T Consensus 165 ~~~A~~aykKaLeld--P~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALELD--PDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhccC--CCcHHHHH
Confidence 999999999998764 55555543
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.78 E-value=0.025 Score=59.36 Aligned_cols=82 Identities=11% Similarity=0.196 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHhHHHH
Q 003353 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP---TPSTYSCLLEMHASSGQVDSAMK 466 (827)
Q Consensus 390 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~ 466 (827)
+.+.|.++|+...+. +..+...|..-++.+.+.|+.+.|..+|++.... +.+ ....|...+.-=.+.|+.+.+.+
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 333344444444432 2223344444444444444444444444444432 111 11245555555555555555555
Q ss_pred HHHHHHH
Q 003353 467 LYNSMTS 473 (827)
Q Consensus 467 l~~~m~~ 473 (827)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.78 E-value=0.081 Score=60.31 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 305 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445554444445566666666666666544 35556666666666666666666666665544
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.76 E-value=0.028 Score=54.03 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL--DGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|.+.+++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444444555555555555555554331111 1224445555555555555555555555543
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.72 E-value=0.026 Score=59.19 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 003353 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS---FNIFASLVDSMGKAGRLDTSMKV 362 (827)
Q Consensus 286 ~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~~ 362 (827)
.+.|..+|+...+. +..+...|...++.+.+.++.+.|..+|++.... +.++ ...|...++.=.+.|+++.+.++
T Consensus 52 ~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 52 PKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33344444444433 2333444444444444444455555555444433 1111 13455555555555555555555
Q ss_pred HHHHHh
Q 003353 363 YMEMQG 368 (827)
Q Consensus 363 ~~~m~~ 368 (827)
.+++.+
T Consensus 130 ~~R~~~ 135 (280)
T PF05843_consen 130 EKRAEE 135 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.71 E-value=0.0067 Score=48.21 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=34.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (827)
.+.|++++|+++|+++.... |.+..++..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666777777777776665 666666666777777777777777777666654
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.61 E-value=0.08 Score=47.31 Aligned_cols=89 Identities=22% Similarity=0.158 Sum_probs=48.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---chHhHHHHHHHHHHc
Q 003353 453 EMHASSGQVDSAMKLYNSMTSAGLRPG--LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS---VDVSASDVLMVYIKD 527 (827)
Q Consensus 453 ~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~y~~~ 527 (827)
.++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..++++.....+. .......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 445556666666666666666555433 224444555666666666666666666654333 112222233355556
Q ss_pred CCHHHHHHHHHHHh
Q 003353 528 GSVDHALRWLRFMG 541 (827)
Q Consensus 528 g~~~~A~~~~~~m~ 541 (827)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666554443
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.55 E-value=0.18 Score=57.51 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003353 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512 (827)
Q Consensus 444 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 512 (827)
+...|.++.-.....|++++|...+++..+ +.|+...|..+...+...|+.++|.+.++++...++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 345555555555556777777777777766 4466666666666677777777777777776665544
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.53 E-value=0.0094 Score=47.51 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHh
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCCFKKVLD 263 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 263 (827)
+..|..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.| ++++|++.|++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~----p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD----PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS----TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666666666666666666666665 556666666666666666 56666666666554
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.51 E-value=0.1 Score=46.65 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=47.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPG--DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~--~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~ 244 (827)
...++..+|+.++|+.+|+.+.... .... ...+-.+...+...|++++|..++++...... +.+.+......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHH
Confidence 3445555666666666666665542 1111 22444555666666666666666666655431 001123333334445
Q ss_pred HHHcCCHHHHHHHHHHhH
Q 003353 245 LAKADKLEMSYCCFKKVL 262 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~ 262 (827)
+...|+.++|.+.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555566666666554444
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.083 Score=54.07 Aligned_cols=99 Identities=9% Similarity=-0.002 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHhHhCCCCCCHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD---KLEMSYCCFKKVLDSDCKIDTQ 271 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~ 271 (827)
-|...|-.|..+|.+.|+++.|...|.+..+.. +++...+..+..++.... .-.++..+|+++...++. |+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ir 228 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIR 228 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHH
Confidence 344444444555555555555555554444443 444444444444433321 233444444444443332 444
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+...|...+...|++.+|...++.|.+
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444444444444444444444444
No 188
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=2.4 Score=48.64 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK 526 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~ 526 (827)
+.+--+.-+...|+..+|.++-.+.. -||...|---+.+++..+++++-+++-+... +..-|...+.+|.+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACLK 756 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHHh
Confidence 34444555566677777777766654 3677777777777777777776665544333 23345555667777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 527 DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574 (827)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 574 (827)
.|+.++|.+.+-+... . . -...+|.+.|++.+|.++--+
T Consensus 757 ~~n~~EA~KYiprv~~--l---~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG--L---Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccCC--h---H----HHHHHHHHhccHHHHHHHHHH
Confidence 7777777777765431 1 1 223566777777777665543
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.44 E-value=1.6 Score=49.32 Aligned_cols=191 Identities=14% Similarity=0.160 Sum_probs=122.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC-CCCCCHHHHHHHHHHHHHcCChh
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYNVLMTLFLNKGLPY 287 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~n~li~~~~~~g~~~ 287 (827)
--|++++|.++|-+|-+++. -|..+.+.|++-...++++.--.. .-+.-..+|+.+...++....|+
T Consensus 746 ~~g~feeaek~yld~drrDL------------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRDL------------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred hhcchhHhhhhhhccchhhh------------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999988877652 567788889888887777542110 00112367888888888888899
Q ss_pred HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 367 (827)
+|.+.|..-... ...+.++.+..++++-..+-..+ +.+....-.+.+++...|.-++|.+.|-+--
T Consensus 814 ~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 814 EAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 998888765321 23455666666666555444433 4445667778888889999888888775433
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--------------HHHHHHHhcCChhHHHHHH
Q 003353 368 GCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFT--------------MIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 368 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--------------~li~~~~~~g~~~~A~~~~ 433 (827)
.|. ..+..|....++.+|.++-+...- |...|.- --|..+.+.|+.-+|-+++
T Consensus 880 ----~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll 946 (1189)
T KOG2041|consen 880 ----LPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLL 946 (1189)
T ss_pred ----CcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHH
Confidence 222 234567777788888777655321 2222221 1245566777766666666
Q ss_pred HHHHH
Q 003353 434 TDMER 438 (827)
Q Consensus 434 ~~m~~ 438 (827)
.+|-+
T Consensus 947 ~qmae 951 (1189)
T KOG2041|consen 947 SQMAE 951 (1189)
T ss_pred HHHhH
Confidence 66653
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.43 E-value=0.011 Score=46.56 Aligned_cols=55 Identities=13% Similarity=0.300 Sum_probs=25.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
..+.+.|++++|.+.|+++++.. |.+..++..+..++.+.|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD----PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555554443 44444444444455555555555554444443
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.41 E-value=0.032 Score=58.57 Aligned_cols=130 Identities=12% Similarity=-0.039 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCch--HhHHHHHHHHHHcCCHHHHHHHHHHHhh----CCCC-CCH
Q 003353 481 STYTALLTLLAKRKLVDVAAKILLEMKT----MGYSVD--VSASDVLMVYIKDGSVDHALRWLRFMGS----SGIR-TNN 549 (827)
Q Consensus 481 ~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~-p~~ 549 (827)
..|..|.+.|.-.|+++.|+..++.-++ .|-+.. ..+..+..++.-.|+++.|.+.++.... .|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566677777778899999888775433 232222 2567788889999999999998886543 2211 224
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 550 FIVRQLFESCMKNALYESAKPLLETYVE----SA-AKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 550 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~g-~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l 610 (827)
.+.-+|.+.|.-..+++.|+..+.+=+. .+ ..-....+.+|.++|...|..++|..+.+.-
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4555677777777888888888876432 11 1234568889999999999999998876653
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.36 E-value=1.8 Score=46.06 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=37.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 461 (827)
|.-+...|+...|.++-.+.. .||..-|-..+.+++..+++++-.++-.. + -+++-|-.++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHHHCCCH
Confidence 344444555555444443332 24555555555555555555544443221 1 1334455555555555555
Q ss_pred hHHHHHHHH
Q 003353 462 DSAMKLYNS 470 (827)
Q Consensus 462 ~~A~~l~~~ 470 (827)
.+|..+...
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555554444
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.32 E-value=0.039 Score=57.96 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=34.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (827)
..-+++.|+......+|+..++.|..+...-..+|..|..+|.-.+++++|.+..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 3456777777777777777777664333333445666666677777777776653
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=1.5 Score=43.90 Aligned_cols=130 Identities=12% Similarity=0.104 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH-----
Q 003353 413 FTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL----- 487 (827)
Q Consensus 413 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li----- 487 (827)
.+.++..+.-.|.+.-...++++.++...+.+++....|...-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344455555555666666666666665555566666666666666666666666666555422222222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
..+...+++.+|...+.++...+....+..++-.....-.|+..+|++..+.|.+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2233344555555555555554443333333322222234445555555555543
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.22 E-value=0.02 Score=45.36 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=42.2
Q ss_pred HHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
.+.|++++|++.|+++.+..+. +...+..+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4567777777777777766554 6667777777777777777777777777764 3554444443
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.21 E-value=0.019 Score=45.10 Aligned_cols=57 Identities=16% Similarity=0.305 Sum_probs=37.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+...+.+.|++++|...|+++.+..+. +...|..+..++...|++++|...|++.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566677777777777777766543 566666677777777777777777776655
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.19 E-value=0.4 Score=47.64 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK 267 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 267 (827)
.+-.....+.+.|++++|.+.|+.+.... +..+-...+.-.++.++-+.|++++|...+++..+.-+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34444556677888888888888887664 122334456666777888888888888888887765443
No 198
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.07 E-value=2.5 Score=44.98 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003353 416 IIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKL 495 (827)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 495 (827)
.|.-+...|+...|.++-.+.. + |+..-|-..+.+|+..+++++-.++-.. +-.+.-|..++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444444555544444433321 1 3455555555555555555544443221 1122444555555555555
Q ss_pred HHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHH
Q 003353 496 VDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536 (827)
Q Consensus 496 ~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~ 536 (827)
..+|..+... .....-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHH
Confidence 5555544433 1113344455555555555443
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.06 E-value=1 Score=44.68 Aligned_cols=48 Identities=15% Similarity=0.011 Sum_probs=24.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchH---hHHHHHHHHHHcCCHHHH
Q 003353 486 LLTLLAKRKLVDVAAKILLEMKTMGYSVDV---SASDVLMVYIKDGSVDHA 533 (827)
Q Consensus 486 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~---~~~~li~~y~~~g~~~~A 533 (827)
+..-|.+.|.+..|..-++.+++.-+.... ....++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344566666666666666666665433321 344455566666655533
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.00 E-value=0.032 Score=44.35 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcC-CHHHHHHHHHHHh
Q 003353 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG-SVDHALRWLRFMG 541 (827)
Q Consensus 482 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~ 541 (827)
+|..+...+...|++++|+..|++.++..+.....+..+..+|.+.| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444443333334444444444444 3444444444433
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.99 E-value=0.82 Score=51.08 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488 (827)
Q Consensus 409 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 488 (827)
+..+...+..-+.+...+..|-++|..|-. ...+++.....+++.+|..+-+...+ ..||+ |..-.+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dV--y~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDV--YMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccc--cchHHH
Confidence 334444445555556777788888887754 23467778888888888888877766 44553 333445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 003353 489 LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSS 543 (827)
Q Consensus 489 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 543 (827)
-++...++++|.+ +|.+.|+-.+|.++++++...
T Consensus 813 wLAE~DrFeEAqk---------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 813 WLAENDRFEEAQK---------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhhhhhHHHHHH---------------------HHHHhcchHHHHHHHHHhhhh
Confidence 5566666666654 445667778888888877643
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.97 E-value=1.5 Score=41.62 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 380 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
.|..++...|++.+|...|++...--..-|....-.+.++....+++..|...++++
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 333444444444444444444333222223333333333333444444444444433
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=2.5 Score=42.38 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS-----LIE 383 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----li~ 383 (827)
+.+++.+...|.+.-...++.+.++.+.+.++.....|++.-.+.||.+.|...|+...+..-..|..+.+. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 445555555566666666666666665555566666666666666666666666665543211222222222 222
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 384 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
.|.-.+++.+|...+++....... |....|.-.-+..-.|+..+|.+.++.|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344555555555555443322 333333322223334555555555555554
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.74 E-value=0.17 Score=47.16 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK-----ERNFRPSFNI 342 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t 342 (827)
+...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.++|+++. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555556666666666666665542 2245566666666666666666666665553 2355565544
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.70 E-value=3.5 Score=43.71 Aligned_cols=311 Identities=15% Similarity=0.093 Sum_probs=200.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH--HHHcCCHH
Q 003353 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN--ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY--LAKADKLE 252 (827)
Q Consensus 177 ~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~--~~~~g~~~ 252 (827)
+..+.+.|...++.. .|..|-.++. -.|+-..|.++-.+..+.- ..|....-.|+.+ -.-.|+++
T Consensus 69 P~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~ll----ssDqepLIhlLeAQaal~eG~~~ 137 (531)
T COG3898 69 PYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKLL----SSDQEPLIHLLEAQAALLEGDYE 137 (531)
T ss_pred cHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhhh----hccchHHHHHHHHHHHHhcCchH
Confidence 334567777666543 3555555553 5678888888877765443 3444444444443 34569999
Q ss_pred HHHHHHHHhHhCCCCCCHHHH----HHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 253 MSYCCFKKVLDSDCKIDTQSY----NVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~----n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 328 (827)
+|.+-|+.|.. |..+- ..|.-...+.|..+.|...-++.-.... --...+...+...|..|+|+.|++++
T Consensus 138 ~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 138 DARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred HHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHH
Confidence 99999999986 33332 2333334467888888888877765422 23567888999999999999999999
Q ss_pred HHHHHcC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 329 QEMKERN-FRPSFNI--FASLVDSMG---KAGRLDTSMKVYMEMQGCGHRPSAPM-YVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 329 ~~m~~~g-~~p~~~t--~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
+.-+... +.+++.- --.|+.+-+ -..+...|...-.+..+. .||.+- -..-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 8876543 3344321 122222211 123455666665555543 566442 333457889999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 003353 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA-GFLP-TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG 479 (827)
Q Consensus 402 ~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 479 (827)
=+....|+.. .+-.+.+.|+. +..-+++..+. .++| +..+..++..+-...|++..|..--+...+ ..|.
T Consensus 290 WK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pr 361 (531)
T COG3898 290 WKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPR 361 (531)
T ss_pred HhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCch
Confidence 8876666542 22234455543 33333333311 1223 556677778888889999988887777766 5788
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCch
Q 003353 480 LSTYTALLTLL-AKRKLVDVAAKILLEMKTMGYSVD 514 (827)
Q Consensus 480 ~~t~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~~~ 514 (827)
...|..|.+.- +..|+-.++.+.+.+.++..-.|.
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 88888887754 456999999999999998765555
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.43 Score=49.01 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003353 269 DTQSYNVLMTLFLNKGLPYKAFEIYESME 297 (827)
Q Consensus 269 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~ 297 (827)
|...|-.|...|...|++..|...|.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~ 183 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNAL 183 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34444444444444444444444444443
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.44 E-value=0.29 Score=50.54 Aligned_cols=98 Identities=10% Similarity=0.001 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-C-CHHHHHHHHH
Q 003353 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGIR-T-NNFIVRQLFE 557 (827)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~ll~ 557 (827)
|...+..+.+.|++++|...|+.+++..+... ..+..+...|...|++++|...|+.+.+.-.. | ....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44433333445666666666666665544332 24455556666666666666666666542211 1 1222223344
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC
Q 003353 558 SCMKNALYESAKPLLETYVESAA 580 (827)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~~~g~ 580 (827)
.+...|+.++|...|+++++.-+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc
Confidence 45566666666666666655433
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.43 E-value=0.054 Score=43.60 Aligned_cols=57 Identities=9% Similarity=0.152 Sum_probs=38.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 265 (827)
..+.+.+++++|.+.++.++..+ |.+...+.....++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD----PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC----cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 44566667777777777766665 6666666666666677777777777666666554
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.37 E-value=0.27 Score=50.80 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CCHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--IDTQSY 273 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~ 273 (827)
.|...+..+.+.|++++|...|+.+++.. |.+ ..++--+...|...|++++|...|+.+.+.-+. .....+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 34444433344566666666666666554 222 235555666666666666666666666543211 122333
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
-.+...+...|+.++|.++|++.++
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555566666666655554
No 210
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=4.5 Score=47.09 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=25.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003353 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNE 603 (827)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 603 (827)
..+.+..+++.+..+.+..-+ . |...|-.+++.+++.+..++-
T Consensus 713 ~~~~q~~d~E~~it~~~~~g~---~-~p~l~~~~L~yF~~~~~i~~~ 755 (933)
T KOG2114|consen 713 LYFQQISDPETVITLCERLGK---E-DPSLWLHALKYFVSEESIEDC 755 (933)
T ss_pred HHHHHhhChHHHHHHHHHhCc---c-ChHHHHHHHHHHhhhcchhhH
Confidence 445566666666666655422 2 666777777777776654433
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=95.09 E-value=1.5 Score=41.08 Aligned_cols=90 Identities=9% Similarity=-0.029 Sum_probs=65.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
..-+.+.|++++|..+|.-+...+. -|..-|..|..++-..+++++|...|..+...+.............|...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3445677888888888887776322 134445566666667888888888888887766554556677778888888888
Q ss_pred HHHHHHHHHhh
Q 003353 532 HALRWLRFMGS 542 (827)
Q Consensus 532 ~A~~~~~~m~~ 542 (827)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888887776
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.05 E-value=4.1 Score=44.00 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=15.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003353 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 385 (827)
.|+.++|++++..+......++..+|..+.+.|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455555555555533333344444554444443
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.04 E-value=3.6 Score=44.38 Aligned_cols=76 Identities=9% Similarity=-0.030 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCC---CCCCHHHHHHHHHHHHH---cCChhHHHHHHHHhHhCCccCCHHHHHHHHH
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSD---CKIDTQSYNVLMTLFLN---KGLPYKAFEIYESMEKGECSLDGSTYELMIP 313 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~n~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 313 (827)
.++-.|....+++..+++.+.+.... +......-....-++-+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444666666666666666665431 00011111122334444 5666666666666544444556666666665
Q ss_pred HH
Q 003353 314 SL 315 (827)
Q Consensus 314 ~~ 315 (827)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 214
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.99 E-value=4 Score=40.03 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGC-GHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIE- 418 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~- 418 (827)
..+......+...+++..+...+...... ........+......+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444455555555555555555554431 112233344444444555555555555555554432222 111111111
Q ss_pred HHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcC
Q 003353 419 SHAKSGKLDIAMSIFTDMERAGF--LPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG--LSTYTALLTLLAKRK 494 (827)
Q Consensus 419 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g 494 (827)
.+...|+++.|...+.+...... ......+......+...++.++|...+.+.... .++ ...+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 44445555555555555433111 011222222222234444555555555544442 122 233333333444444
Q ss_pred CHHHHHHHHHHHHH
Q 003353 495 LVDVAAKILLEMKT 508 (827)
Q Consensus 495 ~~~~A~~l~~~m~~ 508 (827)
.++.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 44444444444443
No 215
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.97 E-value=6.6 Score=42.49 Aligned_cols=131 Identities=14% Similarity=0.087 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHH
Q 003353 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAG-LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVY 524 (827)
Q Consensus 446 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y 524 (827)
.+|...++.-.+..-++.|..+|-+..+.| +.+++..+++++.-++ .|+..-|..+|+.-...-.......+..+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455566666666666777777777777766 4566667777776554 35666677777665554333333344555566
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003353 525 IKDGSVDHALRWLRFMGSSGIRTN--NFIVRQLFESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
...++-+.|..+|+..+++ +.-+ ..+|..++.--.+-|+...+..+=++|.+.
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 6677777777777755432 1112 345666666666667776666666666553
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.91 E-value=0.15 Score=47.65 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003353 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESM 296 (827)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m 296 (827)
..++..+...|++++|..+.+.+....+- |...|..+|.+|...|+..+|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444444444444444444444332 4444444555555555555555444444
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=9.7 Score=43.97 Aligned_cols=328 Identities=12% Similarity=0.061 Sum_probs=168.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc
Q 003353 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL--PYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318 (827)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~ 318 (827)
+++-+...+.+..|+++-..+...-.+ +...|.....-+.+..+ -+++++..++=..... -...+|..+.+-.-.+
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 455566666677777666655432111 13444444444544421 1223333333222212 2344566666666667
Q ss_pred CCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003353 319 GRLDAAIKLFQEMKERNFR----PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394 (827)
Q Consensus 319 g~~~~A~~~~~~m~~~g~~----p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 394 (827)
|+.+.|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+... -+...+...+ .+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhchhh
Confidence 7777777666543222110 11222344455556667766666666555532 1222222111 233445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHH----HcCCCCCHHHHHHHHHHHHHcCC---------
Q 003353 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI-FTDME----RAGFLPTPSTYSCLLEMHASSGQ--------- 460 (827)
Q Consensus 395 ~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~-~~~m~----~~g~~p~~~t~~~li~~~~~~g~--------- 460 (827)
..+|.+..+.. |..+ +-+.|-...+...+-.+ ++... ..|..|+. ....+.+.+...
T Consensus 592 ~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 592 LSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHH
Confidence 55555544321 1111 11222222221111111 11100 11222222 222333333322
Q ss_pred -HhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HhHHHHHHHHHHcCCHHHHHHHH
Q 003353 461 -VDSAMKLYNSMTS-AGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWL 537 (827)
Q Consensus 461 -~~~A~~l~~~m~~-~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~li~~y~~~g~~~~A~~~~ 537 (827)
..+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. + || ..|.--+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---i-pdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---I-PDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---C-cchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1222333334433 2333444566667777888899999988766543 2 44 46667788999999999988877
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 538 RFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 538 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
+.+.. +.-|.-...+|.+.|+.++|.+.+-+.-. .. -...+|.++|++.+|.++-
T Consensus 739 kskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 739 KSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 66542 33455566899999999999999987532 11 4667899999999987763
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.83 E-value=2.8 Score=47.05 Aligned_cols=216 Identities=15% Similarity=0.147 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH---------HHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCC
Q 003353 303 LDGSTYELMIPSLAKSGRLDAAIKLF---------QEMKERNFRPSFNIFASLVDSMGKAGRLD--TSMKVYMEMQGCGH 371 (827)
Q Consensus 303 pd~~t~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~~~~~~m~~~g~ 371 (827)
|..+.+.+=+..|...|.+++|.++- +.+... ..+.--++..=++|.+..+.. +...-++++.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 44445555666778888888876542 111111 112234555556777766544 33334567777887
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH------------HHHHHc
Q 003353 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF------------TDMERA 439 (827)
Q Consensus 372 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~------------~~m~~~ 439 (827)
.|+.... ...++-.|++.+|-++|.+- |.. |..+.+|.....+|.|.+++ ++--+
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~- 698 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD- 698 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-
Confidence 7876643 34556677788888777643 221 11233333333333333333 22111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHH------HHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003353 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYN------SMTSAGL---RPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 440 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~------~m~~~g~---~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 510 (827)
..-++.-=.+...++...|+.++|..+.- -+.+-+- ..+..+...+...+.+...+..|.++|..|-.
T Consensus 699 -WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-- 775 (1081)
T KOG1538|consen 699 -WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-- 775 (1081)
T ss_pred -HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--
Confidence 00011111123445556677777765532 1111111 12344555555556667777788888877754
Q ss_pred CCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 511 YSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 511 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
..+++++....+++++|..+-++..+
T Consensus 776 ------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 776 ------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ------HHHHhhheeecccchHhHhhhhhCcc
Confidence 34567788889999999998887764
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.67 E-value=0.69 Score=50.52 Aligned_cols=66 Identities=9% Similarity=0.022 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT---QSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+.+...++.+..+|.+.|++++|+..|++..+..+. +. .+|..+..+|...|+.++|++.+++.++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555666666666666666666655554322 11 2455666666666666666666666655
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.55 E-value=0.42 Score=52.16 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF---SAYNRVIQYLAKADKLEMSYCCFKKVLDS 264 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (827)
+.+...|+.+..+|.+.|++++|+..|++.++.. |.+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667899999999999999999999999999886 6655 45999999999999999999999999874
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.53 E-value=1.2 Score=50.34 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHhHhCC---ccCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 250 KLEMSYCCFKKVLDSDCKIDTQSYNVL-MTLFLNKGLPYKAFEIYESMEKGE---CSLDGSTYELMIPSLAKSGRLDAAI 325 (827)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~n~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~t~~~li~~~~~~g~~~~A~ 325 (827)
..+.|.++++.+.++- |+...|... .+.+...|+.++|++.|++..... .+.....+--+.-.+.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3445555555554432 333333221 223333455555555555433210 0112223333444455555566666
Q ss_pred HHHHHHHHc
Q 003353 326 KLFQEMKER 334 (827)
Q Consensus 326 ~~~~~m~~~ 334 (827)
+.|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555543
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.44 E-value=0.46 Score=42.93 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 003353 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMER-AGFLPTPSTYSCLL 452 (827)
Q Consensus 407 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li 452 (827)
.|+..+..+++.+|+..|++..|.++.+...+ .+++.+..+|..|+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34444444444444444444444444444332 23333344444444
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.43 E-value=0.71 Score=51.47 Aligned_cols=131 Identities=13% Similarity=0.115 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
...+.++.-+-+.|..+.|+++-.+-. .-.....++|+++.|.++.++. .+...|..|.
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~---------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg 354 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD---------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLG 354 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH---------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH---------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHH
Confidence 345566666666666666666543322 1234455666666665554322 2555666666
Q ss_pred HHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003353 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD 357 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 357 (827)
+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+....+|- +|....++.-.|+++
T Consensus 355 ~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~ 419 (443)
T PF04053_consen 355 DEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVE 419 (443)
T ss_dssp HHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HH
T ss_pred HHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHH
Confidence 666666766666666666543 44455556666666666666666665552 444444455556666
Q ss_pred HHHHHHH
Q 003353 358 TSMKVYM 364 (827)
Q Consensus 358 ~A~~~~~ 364 (827)
+..+++.
T Consensus 420 ~cv~lL~ 426 (443)
T PF04053_consen 420 ECVDLLI 426 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 224
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.29 E-value=5.8 Score=38.82 Aligned_cols=222 Identities=18% Similarity=0.124 Sum_probs=129.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHH
Q 003353 353 AGRLDTSMKVYMEMQGCGHR-PSAPMYVSLIESYAKAGKLDTALRLWDEMRIA-GFRPNFGLFTMIIESHAKSGKLDIAM 430 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~ 430 (827)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555555555544321 13456666777777788888888777776642 22334555666666667777777788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 431 SIFTDMERAGFLPTPSTYSCLLE-MHASSGQVDSAMKLYNSMTSAGLRP----GLSTYTALLTLLAKRKLVDVAAKILLE 505 (827)
Q Consensus 431 ~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~li~~~~~~g~~~~A~~l~~~ 505 (827)
+.+.........+ ......... .+...|++++|...+.+... ..| ....+......+...++.+.+...+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 7777777643332 122222222 67777778888877777755 222 223333334445566777777777777
Q ss_pred HHHCCCC-chHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003353 506 MKTMGYS-VDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 506 m~~~g~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
..+.... ....+..+...+...++.+.|...+......... ....+..+...+...|..+++...+.+..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7765544 3345566666667777777777777766643322 1222333333334555666666666666554
No 225
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.25 E-value=0.2 Score=40.20 Aligned_cols=52 Identities=12% Similarity=-0.058 Sum_probs=23.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 490 LAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 490 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
|.+.+++++|.++++.++..++.....+......|.+.|++++|.+.|++..
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444444444444444433333334444444444444444444444444
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.23 E-value=9 Score=40.79 Aligned_cols=284 Identities=14% Similarity=0.059 Sum_probs=180.7
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHhHhCCccCCHHHH----HHHHHHHHHcCCH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF--LNKGLPYKAFEIYESMEKGECSLDGSTY----ELMIPSLAKSGRL 321 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~----~~li~~~~~~g~~ 321 (827)
.|+-..|.++-.+..+. +.-|....-.++.+- .-.|+++.|.+-|+.|... ..|- ..|.-..-+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccH
Confidence 46677777766554321 112444444555443 3479999999999999873 3443 3344445678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHH---cCCHHHHH
Q 003353 322 DAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG-HRPSAPM--YVSLIESYAK---AGKLDTAL 395 (827)
Q Consensus 322 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~li~~~~~---~g~~~~A~ 395 (827)
+.|...-+..-+.- +.-...+...+...|..|+++.|+++.+.-.... +.+++.- -..|+.+-.. ..+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 99999888877654 3334778899999999999999999998876532 3455432 2233332221 23556666
Q ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-
Q 003353 396 RLWDEMRIAGFRPNFGLF-TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS- 473 (827)
Q Consensus 396 ~l~~~m~~~g~~pd~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~- 473 (827)
..-.+..+ +.||.+-- ..-..++.+.|++.++-.+++.+-+....|+. +. +..+.+.|+ .++.-+++..+
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHH
Confidence 65555544 45554332 22356789999999999999999987555543 22 222344454 44444444333
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHh-HHHHHHHH-HHcCCHHHHHHHHHHHhhCCCCCC
Q 003353 474 AGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS-ASDVLMVY-IKDGSVDHALRWLRFMGSSGIRTN 548 (827)
Q Consensus 474 ~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~li~~y-~~~g~~~~A~~~~~~m~~~~~~p~ 548 (827)
..++|| ..+...+..+-...|++..|..--+...+. .|... |.-|.+.- ...|+-.++..++.+.+...-.|.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 125565 456667777888899999888777766653 44443 33444433 345999999999999887655544
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=3 Score=42.80 Aligned_cols=146 Identities=13% Similarity=0.091 Sum_probs=93.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
...+...|++.+|..+|+...... +.+..+--.++.+|...|+.+.|..++..+...--.........-|..+.+.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~----~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA----PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC----cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 445678888899999998888876 6667777788888888999999999888887543222222222334455555
Q ss_pred CChhHHHHHHHHhHhCCccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCH
Q 003353 284 GLPYKAFEIYESMEKGECSL-DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF-RPSFNIFASLVDSMGKAGRL 356 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~ 356 (827)
....+..++-.+.... | |...-..+...+...|+.++|.+.+-.+.+++. --|...-..+++.+.-.|.-
T Consensus 217 a~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 217 AATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred hcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 5555555555555443 3 555666677777788888888777666654421 23334455555555555533
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.07 E-value=2.3 Score=38.00 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003353 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY 511 (827)
Q Consensus 449 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 511 (827)
...++.+.+.|+-++-.+++.++.+. -++++.....+..+|.+.|+..++.+++.++-+.|.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555555555555555555432 234555555555566666666666666665555554
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=93.76 E-value=0.69 Score=43.34 Aligned_cols=86 Identities=8% Similarity=-0.062 Sum_probs=40.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY 287 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~ 287 (827)
-..|++++|..+|.-+...+ +-+..-|..|...+-..+++++|+..|......+.. |....-....+|...|+.+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d----~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD----FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHH
Confidence 34555555555555554443 334444444555555555555555555444332221 3333333444455555555
Q ss_pred HHHHHHHHhHh
Q 003353 288 KAFEIYESMEK 298 (827)
Q Consensus 288 ~A~~~~~~m~~ 298 (827)
.|...|+..+.
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 55555544443
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=8.3 Score=38.47 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421 (827)
Q Consensus 342 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 421 (827)
.|.....+|-...++++|...+.+..+. .+.+...|. ..+.++.|.-+.++|.+.. --+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 3444445566666677766666555421 011211111 2233455555555554421 11233455566677
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCCH
Q 003353 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA---G--LRPGLSTYTALLTLLAKRKLV 496 (827)
Q Consensus 422 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g--~~pd~~t~~~li~~~~~~g~~ 496 (827)
.+|..+-|-..+++.-+. ..+-+.++|+++|++...- + .+--...+..+-..+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777666666654431 2233455555555554431 0 000112233334445555555
Q ss_pred HHHHHHHHHHHHC----CCCch--HhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 497 DVAAKILLEMKTM----GYSVD--VSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 497 ~~A~~l~~~m~~~----g~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
++|-..+.+-... .--++ ..+...|..|....++..|.++++.-.
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 5555444332211 01111 134445555556666666666666533
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.68 E-value=0.16 Score=41.38 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEM 331 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m 331 (827)
++..+..++...|++++|.+.+++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.59 E-value=0.85 Score=41.20 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 003353 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GLRPGLSTYTALLTLL 490 (827)
Q Consensus 441 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~ 490 (827)
..|+..+..+++.+|+.+|++..|+++.+...+. ++..+..+|..|+.-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4566666777777777777777777776666552 4555566666666633
No 233
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.58 E-value=1.6 Score=42.47 Aligned_cols=31 Identities=29% Similarity=0.623 Sum_probs=26.1
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 655 ARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 655 ~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
++|+| |+..|-..|++++|..+|+.+...++
T Consensus 238 EtyFY--L~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 238 ETYFY--LGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHH--HHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35664 99999999999999999999876654
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.58 E-value=0.41 Score=38.97 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-ch--HhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 482 TYTALLTLLAKRKLVDVAAKILLEMKTM----GYS-VD--VSASDVLMVYIKDGSVDHALRWLRFM 540 (827)
Q Consensus 482 t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-~~--~~~~~li~~y~~~g~~~~A~~~~~~m 540 (827)
+|+.+...|...|++++|+..+++.++. |.. +. .++..+...|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555555544432 111 11 12334444445555555555544443
No 235
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.56 E-value=13 Score=40.44 Aligned_cols=432 Identities=11% Similarity=0.071 Sum_probs=225.2
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVP---G-DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p---~-~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~ 243 (827)
+-+|...++..+|.++|.++-...--.| . ...-+.+++++... +.+.....+....+.. +......--..-
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~----~~s~~l~LF~~L 87 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF----GKSAYLPLFKAL 87 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc----CCchHHHHHHHH
Confidence 3456677888888888887766421111 1 12334566666644 5566666666665543 322322222223
Q ss_pred HHHHcCCHHHHHHHHHHhHhC--CCC------------CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC----CccCCH
Q 003353 244 YLAKADKLEMSYCCFKKVLDS--DCK------------IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG----ECSLDG 305 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~--g~~------------p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~ 305 (827)
.+-+.+.+.+|.+.+..-.+. +-+ +|..-=+..++.+...|.+.++..++++|... ...-+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 345677888888877665543 211 12222356677788888898888888887654 334677
Q ss_pred HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcC--CHHHHHHH
Q 003353 306 STYELMIPSLAKSGR---------------LDAAIKLFQEMKER------NFRPSFNIFASLVDSMGKAG--RLDTSMKV 362 (827)
Q Consensus 306 ~t~~~li~~~~~~g~---------------~~~A~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g--~~~~A~~~ 362 (827)
.+|+.++-.+.+.-- ++.+.-...+|... .+-|.......++.-..-.- +..--+++
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~ 247 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQI 247 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHH
Confidence 888876555543211 12222222222211 12233333333333222111 11111222
Q ss_pred HHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 363 YMEMQGCGHRPSAP-MYVSLIESYAKAGKLDTALRLWDEMRIAGFRP----NFGLFTMIIESHAKSGKLDIAMSIFTDME 437 (827)
Q Consensus 363 ~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~li~~~~~~g~~~~A~~~~~~m~ 437 (827)
++.-...-+.|+-. ....++..+.+ +.+++..+-+.+....+.+ =..++..++....+.++..+|.+.+.-+.
T Consensus 248 l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 248 LENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22222222344432 22333333333 5555555555443322111 13566777778888888888888877665
Q ss_pred HcCCCCCHHHH-------HHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHH---HHHhcCC-HHHHHH
Q 003353 438 RAGFLPTPSTY-------SCLLEMHAS----SGQVDSAMKLYNSMTSAGLRPGLS-TYTALLT---LLAKRKL-VDVAAK 501 (827)
Q Consensus 438 ~~g~~p~~~t~-------~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~---~~~~~g~-~~~A~~ 501 (827)
... |+...- ..+.+..+. .-+...=+.++++.....+ |.. ....|+. -+.+.|. -++|.+
T Consensus 326 ~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 326 ILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred hcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 432 222211 112222221 1223334555666655332 322 2222322 3445555 788899
Q ss_pred HHHHHHHCCCCchHhHH---HHHH-HHHH---cCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHH--HHHcCCHHHH
Q 003353 502 ILLEMKTMGYSVDVSAS---DVLM-VYIK---DGSVDHALRWLRFMGSSGIRTN----NFIVRQLFES--CMKNALYESA 568 (827)
Q Consensus 502 l~~~m~~~g~~~~~~~~---~li~-~y~~---~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~--~~~~g~~~~A 568 (827)
+++.+++-....-..-+ .++. +|.+ ...+.+-+++-+-+.+.|+.|- ...-|.|.+| +..+|++.++
T Consensus 402 LLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 402 LLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 98888874332222211 1121 3432 2334444444455556777653 3455555555 4578899888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003353 569 KPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSA 612 (827)
Q Consensus 569 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~ 612 (827)
.-.-..+.+ +.|++.+|.-+.-++....++++|...+..++.
T Consensus 482 ~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 482 YLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 755555444 678999999998888888999999888876654
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.53 E-value=4 Score=37.56 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=16.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+.+.+........++.+...+ +.+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~----~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN----SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC----ccchhHHHHHHHHHHH
Confidence 333333444444444444444333 2333444444444443
No 237
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.36 E-value=0.5 Score=47.59 Aligned_cols=31 Identities=13% Similarity=0.385 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 424 (827)
+++++++|...|+.||..+-..|++++++.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4444455555555555444444444444433
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.33 E-value=3 Score=38.40 Aligned_cols=125 Identities=13% Similarity=0.249 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc
Q 003353 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318 (827)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~ 318 (827)
..++..+.+.+........++.+...+. .+....|.++..|++.+ ..+.++.++. ..+.+....+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3566666677777888888887777664 46677788888887653 3444444442 12334445566677777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003353 319 GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA-GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386 (827)
Q Consensus 319 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 386 (827)
+.++++.-++.++.. +...++.+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777766666655421 22233333333 5666666655541 24445655555443
No 239
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.30 E-value=7.1 Score=36.81 Aligned_cols=137 Identities=14% Similarity=0.160 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHH-HH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQS-YN 274 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~n 274 (827)
+.+.|...++ +++.+..++|+.-|.++.+.|.. .-.+-..-.........|+...|...|+++-.....|-+.- .-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g--~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYG--SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 4456665554 56777888888888888887751 11122333344556677888888888888776544444331 11
Q ss_pred HH--HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 275 VL--MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 275 ~l--i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
.| .-.+..+|.+++...-.+.+-..+-+.....-..|.-+-.+.|++..|.+.|..+....
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 11 12344567777777777766655544444455566666677788888888877776543
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=6.5 Score=40.47 Aligned_cols=119 Identities=12% Similarity=0.117 Sum_probs=56.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003353 315 LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTA 394 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 394 (827)
....|++.+|...|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 455566666666666665543 2223444456666666666666666666654322111111222223333333333333
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 395 LRLWDEMRIAGFRP-NFGLFTMIIESHAKSGKLDIAMSIFTDME 437 (827)
Q Consensus 395 ~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~ 437 (827)
..+-.+.-.. | |...--.+...+...|+.+.|.+.+-.+.
T Consensus 223 ~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333221 2 33444445555555555555555544444
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.24 E-value=2.1 Score=47.82 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=68.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003353 351 GKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430 (827)
Q Consensus 351 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~ 430 (827)
.-.++++++.+..+.-.-.. .-...-.+.++.-+-+.|..+.|+++-.+-.. -.+...++|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHH
Confidence 34566666665554111000 11133455666666666666666665543221 134445566666665
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003353 431 SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 431 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 510 (827)
++-++. .+...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 544322 2455666666666666666666666655432 3444445555555555555554444433
Q ss_pred CCchHhHHHHHHHHHHcCCHHHHHHHHH
Q 003353 511 YSVDVSASDVLMVYIKDGSVDHALRWLR 538 (827)
Q Consensus 511 ~~~~~~~~~li~~y~~~g~~~~A~~~~~ 538 (827)
- ++....++...|+.++..+++.
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2222233333455555444443
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.14 E-value=2.2 Score=38.06 Aligned_cols=91 Identities=24% Similarity=0.169 Sum_probs=50.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC-CCCCCH---HHHHHHHHHH
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDT---QSYNVLMTLF 280 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~~~n~li~~~ 280 (827)
-+++..|+.+.|++.|.+.+..- |....+||.-..++.-.|+.++|++=+++..+. |.+ .. .+|-.-...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~----P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA----PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc----ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHH
Confidence 34556666666666666666554 556666666666666666666666666655542 222 21 1222233345
Q ss_pred HHcCChhHHHHHHHHhHhCC
Q 003353 281 LNKGLPYKAFEIYESMEKGE 300 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~~g 300 (827)
...|+.+.|..-|+...+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 55566666666666555544
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.09 E-value=4.9 Score=45.54 Aligned_cols=85 Identities=13% Similarity=-0.019 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 494 KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI---RTNNFIVRQLFESCMKNALYESAKP 570 (827)
Q Consensus 494 g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~g~~~~A~~ 570 (827)
...+.|.++++.+.+.-++.......-...+...|++++|++.|++..+... +.....+--+...+.-.+++++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 3445555555555543222111222223344455555555555554432110 0112222233334445555555555
Q ss_pred HHHHHHHC
Q 003353 571 LLETYVES 578 (827)
Q Consensus 571 ~~~~m~~~ 578 (827)
.|.++.+.
T Consensus 327 ~f~~L~~~ 334 (468)
T PF10300_consen 327 YFLRLLKE 334 (468)
T ss_pred HHHHHHhc
Confidence 55555543
No 244
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.04 E-value=0.56 Score=47.23 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003353 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQ 329 (827)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~ 329 (827)
.++-....++.|.+.|++.|..+|+.|+..+-+..- .|.. .+..+.--|=+ +-+-+.++++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-vfQ~~F~HYP~--QQ~C~I~vLe 147 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-VFQKVFLHYPQ--QQNCAIKVLE 147 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-HHHHHHhhCch--hhhHHHHHHH
Confidence 344444556777777888888888877776643221 1111 11111111111 1233566667
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 330 EMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 330 ~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+|...|+.||..+-..|++++.+.+-
T Consensus 148 qME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 148 QMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHcCCCCchHHHHHHHHHhccccc
Confidence 77777777777766667776666554
No 245
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.03 E-value=7.6 Score=40.92 Aligned_cols=127 Identities=14% Similarity=0.270 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--c----CCHhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcC---
Q 003353 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHAS--S----GQVDSAMKLYNSMTSAGL---RPGLSTYTALLTLLAKRK--- 494 (827)
Q Consensus 427 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~----g~~~~A~~l~~~m~~~g~---~pd~~t~~~li~~~~~~g--- 494 (827)
++...+++.|.+.|+.-+..+|-+....... . ....+|..+|+.|.+... .++...+..++.. ..+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445555666666666555554442222222 1 124567777777776431 2445555555543 222
Q ss_pred -CHHHHHHHHHHHHHCCCCchHh--HHHHHHHHHHc---CCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003353 495 -LVDVAAKILLEMKTMGYSVDVS--ASDVLMVYIKD---GSVDHALRWLRFMGSSGIRTNNFIVRQL 555 (827)
Q Consensus 495 -~~~~A~~l~~~m~~~g~~~~~~--~~~li~~y~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~l 555 (827)
-.+.++.+|+.+.+.|+..... +.+-+.++... ....++.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2345566666666666654422 11112122111 1144666667777777766665555433
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.92 E-value=4.5 Score=36.24 Aligned_cols=63 Identities=22% Similarity=0.146 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 003353 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGI 545 (827)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 545 (827)
....++.+...|+-+.-.+++.++.+.+-.+......+..+|.+.|+..+|.+++.++.++|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455566666666666666666543333333445556666666666666666666666654
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.87 E-value=2.7 Score=37.50 Aligned_cols=89 Identities=20% Similarity=0.175 Sum_probs=52.3
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCch---HhHHHHHHHHHHcC
Q 003353 454 MHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTM-GYSVD---VSASDVLMVYIKDG 528 (827)
Q Consensus 454 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~~~---~~~~~li~~y~~~g 528 (827)
+++..|+.+.|++.|.+.+. +.| ....||.-..++.-.|+.++|.+-+++.++. |.+.. ..+..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556666666666666665 232 3456666666666666666666666666653 22211 12334444566677
Q ss_pred CHHHHHHHHHHHhhCC
Q 003353 529 SVDHALRWLRFMGSSG 544 (827)
Q Consensus 529 ~~~~A~~~~~~m~~~~ 544 (827)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777666555
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.79 E-value=12 Score=37.82 Aligned_cols=82 Identities=7% Similarity=0.011 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
..|+ -+..-.+.|++++|.+.|+.+.... +..+-...+.-.++.++-+.+++++|+..+++....-+......|-.-|
T Consensus 36 ~LY~-~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 36 ELYN-EGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3444 3445678899999999999988664 2334456677777888888999999999998888766554445566556
Q ss_pred HHHH
Q 003353 278 TLFL 281 (827)
Q Consensus 278 ~~~~ 281 (827)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 6655
No 249
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.68 E-value=21 Score=40.36 Aligned_cols=135 Identities=12% Similarity=0.198 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n 274 (827)
.+...|++++.---.....+.+...++.++..- |...--|......=.+.|..+.+.++|++-.+ ++...+..|.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky----Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~ 117 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY----PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWL 117 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC----ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHH
Confidence 344566666655555555567777777777654 66666777777777888888888888888776 4455677777
Q ss_pred HHHHHHHH-cCChhHHHHHHHHhHhC-Ccc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 275 VLMTLFLN-KGLPYKAFEIYESMEKG-ECS-LDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 275 ~li~~~~~-~g~~~~A~~~~~~m~~~-g~~-pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..+.-+.. .|+.+.....|+..... |.. .....|...|.--..++++.....++++.++.
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 66554443 56677777777777653 221 23445666777667778888888888888764
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=2.1 Score=45.74 Aligned_cols=95 Identities=9% Similarity=0.040 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHH
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM-IIES 419 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-li~~ 419 (827)
.+++.+.-+|.+.+++.+|++..++.+..+ ++|+-..-.-..+|...|+++.|...|+++.+. .|+-..-+. ++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 456667777777777777777777777665 556666666677777777777777777777764 343333333 3332
Q ss_pred HHhcCC-hhHHHHHHHHHHH
Q 003353 420 HAKSGK-LDIAMSIFTDMER 438 (827)
Q Consensus 420 ~~~~g~-~~~A~~~~~~m~~ 438 (827)
-.+... .+...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 222222 2233555665553
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.44 E-value=2.4 Score=38.83 Aligned_cols=83 Identities=7% Similarity=-0.010 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+..-.....+.|++++|.+.|+.+...- +.++-...+.-.|+.+|.+.+++++|...+++.++..+..--+-|-..+.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33334455677888888888888887654 22244556677788888888888888888888888766544455655555
Q ss_pred HHHH
Q 003353 279 LFLN 282 (827)
Q Consensus 279 ~~~~ 282 (827)
+++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 5544
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.37 E-value=7.7 Score=42.85 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERN-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
.+..++-+.|+.++|.+.+.+|.+.. ...+......|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34444555666666666666665432 112233555566666666666666666666543
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.24 E-value=3.2 Score=45.64 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 521 LMVYIKDGSVDHALRWLRFMGSSG-IRTNNFIVRQLFESCMKNALYESAKPLLETY 575 (827)
Q Consensus 521 i~~y~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 575 (827)
....-+.|+.++|++.|++|.+.. ...+..+...|+.++...+.+.++..++.+.
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333344555555555555554322 1112223444455555555555555555554
No 254
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=1.9 Score=46.17 Aligned_cols=96 Identities=14% Similarity=0.060 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHH-HHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYE-LMIP 313 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~li~ 313 (827)
..+++.|...|.|.+++.+|++.-++.+..+.. |+...-.-..++...|+++.|+..|+++++. .|+..... .++.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 345666777777777777777777777766543 6666666677777777777777777777763 44444333 3333
Q ss_pred HHHHcCCH-HHHHHHHHHHHH
Q 003353 314 SLAKSGRL-DAAIKLFQEMKE 333 (827)
Q Consensus 314 ~~~~~g~~-~~A~~~~~~m~~ 333 (827)
+-.+.... +...++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 33333333 334666666654
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=1.8 Score=44.02 Aligned_cols=96 Identities=13% Similarity=-0.069 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CCC-HHHHHHHH
Q 003353 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSGI-RTN-NFIVRQLF 556 (827)
Q Consensus 482 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~ll 556 (827)
.|+.-+.. .+.|++..|++.|...++..+... ..++.|...+...|++++|..+|..+.+.-. .|. ...+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555443 345667777777777777655443 2456677777777777777777777665321 121 23444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 003353 557 ESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5666667777777777766654
No 256
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=9.6 Score=35.97 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=91.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHH---HHHHH
Q 003353 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGD-ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS---AYNRV 241 (827)
Q Consensus 166 ~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~-~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~---~~~~l 241 (827)
...--+.+.+..++|+.-|..+.+.. +..-+ -..-.+.....+.|+...|...|+++-.... .|-.. .--.-
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~---~P~~~rd~ARlra 138 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS---IPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC---CcchhhHHHHHHH
Confidence 33334456788899999999887753 32222 2233455667889999999999999876643 22221 22222
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCC
Q 003353 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD 304 (827)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 304 (827)
.-.+...|.+++.....+.+...+-..-...-.+|.-+-.+.|++.+|...|.++......|.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 334567889999888888777655444455667787788899999999999999877544443
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.96 E-value=0.44 Score=33.92 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV 241 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~l 241 (827)
+|..+...|.+.|++++|.++|+++++.. |.+..++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~----P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD----PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCCHHHHHHh
Confidence 44555555556666666666666665554 5555555443
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=91.93 E-value=6.6 Score=43.23 Aligned_cols=117 Identities=11% Similarity=0.011 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 177 SDTSLSLFRWAKRQSWYVPG-DECYVMLFDVLN---------ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 177 ~~~Al~~f~~~~~~~~~~p~-~~~~~~li~~l~---------~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
.+.|+.+|..+.......|+ ...|..+..++. ......+|.++.+..++.+ +.|..+...+..+..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld----~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT----TVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHH
Confidence 34589999999833222333 334444333322 1234467777888888777 788888888888888
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
-.++++.|..+|++....++. ...+|........-+|+.++|.+.+++..+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888888888888776543 344555555555567888888888888655
No 259
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.86 E-value=19 Score=37.95 Aligned_cols=129 Identities=16% Similarity=0.269 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH--cC----ChhHHHHHHHHhHhCCc---cCCHHHHHHHHHHHHHcCC-
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN--KG----LPYKAFEIYESMEKGEC---SLDGSTYELMIPSLAKSGR- 320 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~pd~~t~~~li~~~~~~g~- 320 (827)
+++...+++.|.+.|+..+..+|-+....... .. ...+|.++|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44555666667777776666555442222222 11 23456667777765431 2344555555443 2222
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc-CC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003353 321 ---LDAAIKLFQEMKERNFRPSFN-IFASLVDSMGKA-GR--LDTSMKVYMEMQGCGHRPSAPMYVSL 381 (827)
Q Consensus 321 ---~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~-g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 381 (827)
.+.+..+|+.+.+.|+..+.. -+.+-+-++... .. ...+.++++.+.+.|++.....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 344555666666655443222 111111122111 11 23455555566665555554444433
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.78 E-value=14 Score=36.24 Aligned_cols=186 Identities=13% Similarity=0.048 Sum_probs=98.6
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+.++|-+..|.-=|..+.... |.-+..||.+.--+...|+++.|.+.|+...+.+ |....+.-.-.-++--
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD----p~y~Ya~lNRgi~~YY 145 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD----PTYNYAHLNRGIALYY 145 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC----CcchHHHhccceeeee
Confidence 344455666666666666666543 3345678888888888888888888888888776 5555544444444455
Q ss_pred cCCHHHHHHHHHHhHhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCK-IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~-p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
-|+++-|.+-|-..-+.++. |=...|-.++. +.-++.+|..-+.+--+ ..|..-|...|-.+.- |++. ...
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~ 217 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EET 217 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHH
Confidence 67788887777666655433 22334443332 23355555544332221 1244444443333321 1111 111
Q ss_pred HHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 327 LFQEMKERNFRPS-------FNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 327 ~~~~m~~~g~~p~-------~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
+++++.... ..+ ..||--|.+-|...|+.++|..+|+-...
T Consensus 218 l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 218 LMERLKADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 222222211 111 23455566666666677777666666654
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.57 E-value=20 Score=37.54 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCH---hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHH
Q 003353 447 TYSCLLEMHASSGQV---DSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522 (827)
Q Consensus 447 t~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~ 522 (827)
+...++.+|...+.. ++|.++++.+... .|+ ...+..-+..+.+.++.+++.+.+.+|+..-.-++..+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 455566666665553 3455555555442 223 3344344555555677777777777777654334444443333
Q ss_pred HHH--HcCCHHHHHHHHHHHhhCCCCCCH
Q 003353 523 VYI--KDGSVDHALRWLRFMGSSGIRTNN 549 (827)
Q Consensus 523 ~y~--~~g~~~~A~~~~~~m~~~~~~p~~ 549 (827)
.+- .......|...++.+....+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 331 112234555555555544444443
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=16 Score=36.53 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~ 316 (827)
.|..-..+|....++++|...+.+..+ +.+.|...|. ....++.|.-+.++|.+. .--+..|+-....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 344444455555555555555544442 1111211111 112234444444444432 111223444555566
Q ss_pred HcCCHHHHHHHHHHHH
Q 003353 317 KSGRLDAAIKLFQEMK 332 (827)
Q Consensus 317 ~~g~~~~A~~~~~~m~ 332 (827)
.+|..+.|-..+++..
T Consensus 103 E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA 118 (308)
T ss_pred HhCCcchHHHHHHHHH
Confidence 6666666655555543
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.49 E-value=42 Score=41.19 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCC
Q 003353 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS 529 (827)
Q Consensus 450 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~ 529 (827)
+..+.+...+.+++|.-.|+..-+ ..-.+.+|..+|++.+|+.+..++....-+.-..-..|+.-+...++
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHccc
Confidence 333444455666666666654432 12335566667777777766665543111111122456666667777
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLET 574 (827)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 574 (827)
.-+|-++..+.... |.. .+..|++...+++|+.+-..
T Consensus 1015 h~eAa~il~e~~sd---~~~-----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---PEE-----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred chhHHHHHHHHhcC---HHH-----HHHHHhhHhHHHHHHHHHHh
Confidence 77777776665531 111 12345566666666665544
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.34 E-value=21 Score=37.38 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 307 TYELMIPSLAKSGRLD---AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 307 t~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
++..++.+|...+..+ +|..+++.+.... +-.+.++-.-+..+.+.++.+++.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455566666655533 3444444443322 222344444555555566677777777776654
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.15 E-value=45 Score=40.93 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 433 (827)
+++++|+.-+.++. ...|.-.++.--+.|.+++|+.++..=.+. -...|.+-.+.+.....+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555554443 112333444445666677776665321110 1123333344444556666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003353 434 TDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLST--YTALLTLLAKRKLVDVAAKILLEMKTMGY 511 (827)
Q Consensus 434 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 511 (827)
+..-+ ..--+.+|..+|++.+|+.+..++.. .-|... -..|+.-+...++.-+|-++..+....
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-- 1028 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-- 1028 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--
Confidence 54432 11235566677777777777776653 112221 245556666666666666666555431
Q ss_pred CchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 512 SVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 512 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
....+..|++...+++|.++-....
T Consensus 1029 -----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 -----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred -----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1233445566666667666655443
No 266
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.13 E-value=27 Score=38.24 Aligned_cols=370 Identities=10% Similarity=0.105 Sum_probs=204.8
Q ss_pred HhcCChhHHHHHHHHHHHc--CCCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCHHH
Q 003353 208 NESRDFDGMLSLFDEMVHD--SSKN---------GISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS----DCKIDTQS 272 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~--~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~ 272 (827)
-+.+.+++|.+.+...... +... .-++...-+..+..+...|++.++..+++++... .+.-++.+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4678888888888877655 2100 0123344466777888899999999888887653 34478888
Q ss_pred HHHHHHHHHHcC--------C-------hhHHHHHHHHhHhC------CccCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 003353 273 YNVLMTLFLNKG--------L-------PYKAFEIYESMEKG------ECSLDGSTYELMIPSLAKS--GRLDAAIKLFQ 329 (827)
Q Consensus 273 ~n~li~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~pd~~t~~~li~~~~~~--g~~~~A~~~~~ 329 (827)
||.++-.+.++= . ++.+.-...+|... .+.|.......++....-. .+..--.++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 888666665431 1 12222222222211 1223333333333322211 12222333333
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 330 EMKERNFRPSFN-IFASLVDSMGKAGRLDTSMKVYMEMQGCGHR----PSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 330 ~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
.-...-+.|+.. +...|+..+.+ +.+++..+.+.+....+. .=..++..++....+.++...|.+.+.-+.-.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333333445432 22333333333 566666665555433221 12457888888899999999999988877653
Q ss_pred CCCCCHHHH-------HHHHHHHHh----cCChhHHHHHHHHHHHcCCCCC-HHHHHH-HHHHHHHcCC-HhHHHHHHHH
Q 003353 405 GFRPNFGLF-------TMIIESHAK----SGKLDIAMSIFTDMERAGFLPT-PSTYSC-LLEMHASSGQ-VDSAMKLYNS 470 (827)
Q Consensus 405 g~~pd~~t~-------~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~-li~~~~~~g~-~~~A~~l~~~ 470 (827)
.|+...- ..+.+..|. .-+...=..++++....++... .+.|-. -..-+-+.|. -++|+++++.
T Consensus 328 --dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 --DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3332211 122233331 1123333455556655433211 122211 1123344455 8899999999
Q ss_pred HHHCCCCCCH-HHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCchH-----hHHHHHHH--HHHcCCHHHHHH
Q 003353 471 MTSAGLRPGL-STYTALL----TLLAK---RKLVDVAAKILLEMKTMGYSVDV-----SASDVLMV--YIKDGSVDHALR 535 (827)
Q Consensus 471 m~~~g~~pd~-~t~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~~~~-----~~~~li~~--y~~~g~~~~A~~ 535 (827)
..+ +.+.. ..-|.+. .+|.+ ...+.+-..+-+-+.+.|+.|.. .-+.|.++ +...|++.++.-
T Consensus 406 il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 406 ILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 987 44433 2322222 23332 23344444555555667777653 23445553 457899999876
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003353 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSV 590 (827)
Q Consensus 536 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 590 (827)
.-..+. .+.|++.+|.-+.-+.....++++|...|.. ++|+..++++=
T Consensus 484 ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 484 YSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSK 531 (549)
T ss_pred HHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHH
Confidence 666665 4678999998887778889999999999987 46677777653
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=4.2 Score=42.28 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=69.6
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHH----HHHHHHHHHcCCHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTY----ELMIPSLAKSGRLD 322 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~----~~li~~~~~~g~~~ 322 (827)
-.|++.+|...++++.+.-+ .|..+++..=++|.-.|+.+.-...+++.... ..+|...| ....-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35666667677777766443 36777777777777777777777777666543 12233222 22223345567777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365 (827)
Q Consensus 323 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 365 (827)
+|.+.-++..+.+ +.|.-.-.++...+--.|+..++.+...+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 7777766666655 45555555666666666777776666544
No 268
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.97 E-value=13 Score=43.75 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=13.6
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 003353 593 HLVRCQDEQNERHLMAILSA 612 (827)
Q Consensus 593 a~~~~g~~~~a~~l~~~l~~ 612 (827)
.+...|++++|.+.++.+.-
T Consensus 514 ~~~~~g~~~~AL~~i~~L~l 533 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKLDL 533 (613)
T ss_dssp HHHHTT-HHHHHHHHHHTT-
T ss_pred HHHHcCCHHHHHHHHHhCCC
Confidence 45567888888888877664
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.90 E-value=37 Score=39.47 Aligned_cols=181 Identities=13% Similarity=0.147 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHH-----HHHcCChhHHHHHHHHhHh-------CCccCCHHHHHHHHHHHHHc
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTL-----FLNKGLPYKAFEIYESMEK-------GECSLDGSTYELMIPSLAKS 318 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~pd~~t~~~li~~~~~~ 318 (827)
..+|.+.++...+.| ++..-..+... +....+.+.|+..|+...+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 355666666666544 22322222222 2234566777777776655 33 233445555555553
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCC
Q 003353 319 G-----RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK-AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA--KAGK 390 (827)
Q Consensus 319 g-----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~ 390 (827)
. +.+.|..++.+..+.| .|+....-..+..... ..+...|.++|...-+.|. +...-+.+++-... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCC
Confidence 2 5566777777777776 3443333222222222 2356677777777777662 22222222221111 2236
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 003353 391 LDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGF 441 (827)
Q Consensus 391 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 441 (827)
.+.|..++.+.-+.|. |-..--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 380 ~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7777777777777762 222222222333333 666666666655555443
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.88 E-value=0.57 Score=33.35 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
++..+...|.+.|++++|+++|+++.+..+. |...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 4566777777777777777777777776554 555555443
No 271
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.76 E-value=15 Score=34.91 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=69.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003353 361 KVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440 (827)
Q Consensus 361 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 440 (827)
+.++.+.+.++.|+...|..+|+.+.+.|++.. +.++.+.++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 344445556667777777777777777776554 344455555566555554443322 2233344443344432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 441 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
=...+..+++.+...|++-+|+++.+..... +......++.+-.+.++...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113555666677777777777776664321 112223345555555555544444444433
No 272
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.76 E-value=5 Score=36.79 Aligned_cols=54 Identities=17% Similarity=0.064 Sum_probs=30.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCch---HhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 003353 491 AKRKLVDVAAKILLEMKTMGYSVD---VSASDVLMVYIKDGSVDHALRWLRFMGSSG 544 (827)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 544 (827)
.+.|++++|.+.|+.+...-+... .....|+.+|.+.|++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 445666666666666665433322 234455666666666666666666666543
No 273
>PRK11906 transcriptional regulator; Provisional
Probab=90.30 E-value=8.3 Score=42.46 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYC 256 (827)
Q Consensus 177 ~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (827)
..+|+++-+.+.+.+ +-|+.+...+..++.-.++++.|..+|++....+ |....+|........-+|+.++|.+
T Consensus 320 ~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~----Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 320 AQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS----TDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC----CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 344788888888876 5788888888888899999999999999999987 8888899888888999999999999
Q ss_pred HHHHhHhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHh
Q 003353 257 CFKKVLDSDCKIDT-QSYNVLMTLFLNKGLPYKAFEIYESM 296 (827)
Q Consensus 257 ~~~~m~~~g~~p~~-~~~n~li~~~~~~g~~~~A~~~~~~m 296 (827)
.+++..+..+..-. ...-..++.|+..+ .++|+.+|-+-
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 99997765443222 22333344666554 67788877544
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.08 E-value=9.6 Score=39.73 Aligned_cols=156 Identities=10% Similarity=0.041 Sum_probs=107.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC-CCCCCHHHHH--HHHHHHHH
Q 003353 206 VLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS-DCKIDTQSYN--VLMTLFLN 282 (827)
Q Consensus 206 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~n--~li~~~~~ 282 (827)
.+...|++.+|-...+++++.. |.|..+++..=.+|.-.|+.+.-...++++... +......+|- .+.-++..
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~----PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDY----PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred HhhccccccHHHHHHHHHHHhC----chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 3456788888888888888876 888888888888999999988888888888753 2221222332 33344556
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C-CCCCHHHHHHHHHHHHhcCCHHH
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER---N-FRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~---g-~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
.|-+++|.+.-++..+.+ +-|...-.++...+--.|++.++.++..+-... + +.....-|. ..-.+...+.++.
T Consensus 188 ~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH-~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH-TALFHIEGAEYEK 265 (491)
T ss_pred hccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH-HHHhhhcccchhH
Confidence 889999999888887753 236667777888888889999998887654322 1 111112232 3335566789999
Q ss_pred HHHHHHHHH
Q 003353 359 SMKVYMEMQ 367 (827)
Q Consensus 359 A~~~~~~m~ 367 (827)
|+++|+.-.
T Consensus 266 aleIyD~ei 274 (491)
T KOG2610|consen 266 ALEIYDREI 274 (491)
T ss_pred HHHHHHHHH
Confidence 999997543
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.04 E-value=3.8 Score=42.34 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh-----CCccCCHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK-----GECSLDGSTYE 309 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~ 309 (827)
..++..++..+..+|+++.+...++++....+. |...|..+|.+|.+.|+...|+..|+++.. .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345555666666666666666666666665543 666666666666666666666666666543 35555555554
Q ss_pred HHHHH
Q 003353 310 LMIPS 314 (827)
Q Consensus 310 ~li~~ 314 (827)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44443
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.74 E-value=2.9 Score=43.19 Aligned_cols=78 Identities=8% Similarity=0.097 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCCCCHHH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD-----SDCKIDTQS 272 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 272 (827)
.++..++..+...|+++.+...++++.... |-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 477888999999999999999999999988 89999999999999999999999999998865 688898888
Q ss_pred HHHHHHH
Q 003353 273 YNVLMTL 279 (827)
Q Consensus 273 ~n~li~~ 279 (827)
+......
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 8776666
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.42 E-value=15 Score=38.73 Aligned_cols=198 Identities=13% Similarity=0.049 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCC---CH
Q 003353 377 MYVSLIESYAKAGKLDTALRLW-------DEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER-AGFLP---TP 445 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~-------~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p---~~ 445 (827)
+|..+..+.++.|.+++++..- .+..+.. .-...|-.+..++.+..++.+++.+-..-.. .|..| .-
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~--~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSD--FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 4555556666666666554322 1111110 0112334444455555555555554443332 12222 11
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCch--
Q 003353 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLR-----PGLSTYTALLTLLAKRKLVDVAAKILLEMKTM----GYSVD-- 514 (827)
Q Consensus 446 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~~-- 514 (827)
....++..++...+.++++++.|+...+---. .....+..|-..|.+..++++|.-+..++.+. +++.-
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 22334566667777788888888877652111 12346777888888888888888776665432 22211
Q ss_pred ----HhHHHHHHHHHHcCCHHHHHHHHHHHhh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 515 ----VSASDVLMVYIKDGSVDHALRWLRFMGS----SGIRTN-NFIVRQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 515 ----~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
...+.|..++...|+.-+|.+.-++..+ .|-++- ...+..+.+.|...|+.+.|..-+++..
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1345566678888888888888877654 342222 2344556667788888888887777653
No 278
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.40 E-value=36 Score=37.11 Aligned_cols=418 Identities=11% Similarity=0.100 Sum_probs=213.7
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 181 LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260 (827)
Q Consensus 181 l~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (827)
+++=+.+... +.|..+|..++.-|...+..++..+++++|..-. |--..+|..-+++-....++...+.+|.+
T Consensus 29 lrLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf----p~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 29 LRLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF----PIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred HHHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC----ccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 5666655552 7788899999999999999999999999997654 66677898888888888999999999999
Q ss_pred hHhCCCCCCHHHHHHHHHHHHHcCCh------hHHHHHHHHhHh-CCccCCHH-HHHHHHH---HHH------HcCCHHH
Q 003353 261 VLDSDCKIDTQSYNVLMTLFLNKGLP------YKAFEIYESMEK-GECSLDGS-TYELMIP---SLA------KSGRLDA 323 (827)
Q Consensus 261 m~~~g~~p~~~~~n~li~~~~~~g~~------~~A~~~~~~m~~-~g~~pd~~-t~~~li~---~~~------~~g~~~~ 323 (827)
..... .+...|...+.--.+.+.. ....+.|+-... .++.|-.. .|+..+. ..- .+.++|.
T Consensus 102 CL~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~ 179 (660)
T COG5107 102 CLKKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK 179 (660)
T ss_pred HHhhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHH
Confidence 88754 4577787777655443311 122334444333 34555433 3444333 222 2334566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH------HHHHHH---hcC----CHHHHHHHHHHHHh--CCCC----CCHHHHHH----
Q 003353 324 AIKLFQEMKERNFRPSFNIFAS------LVDSMG---KAG----RLDTSMKVYMEMQG--CGHR----PSAPMYVS---- 380 (827)
Q Consensus 324 A~~~~~~m~~~g~~p~~~t~~~------li~~~~---~~g----~~~~A~~~~~~m~~--~g~~----p~~~~~~~---- 380 (827)
....+.+|....+..=...|+- =++-.. -.| -+-.|...+++... .|.. .+..++|-
T Consensus 180 iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 180 IRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 6777777776543221122221 111110 011 13455556655542 2221 12223322
Q ss_pred -------HHHHHHHc-----CC-H-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 003353 381 -------LIESYAKA-----GK-L-DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPS 446 (827)
Q Consensus 381 -------li~~~~~~-----g~-~-~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 446 (827)
.|.-=... |+ . ...--++++.... +......|----.-+...++-+.|.+....-... .|+..
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~ 336 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLT 336 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchh
Confidence 11111111 11 0 1111122222211 0111222222222223344555555444332221 12210
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH-----------------------------CCCCCCHHHHHHHHHHHHhcCCHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTS-----------------------------AGLRPGLSTYTALLTLLAKRKLVD 497 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~-----------------------------~g~~pd~~t~~~li~~~~~~g~~~ 497 (827)
--+-..|.-..+.++....|+.... ....--...|...+++-.+...++
T Consensus 337 --~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~ 414 (660)
T COG5107 337 --MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLE 414 (660)
T ss_pred --eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 0111122222222222222222110 001112345566666666777778
Q ss_pred HHHHHHHHHHHCCC-CchH-hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 498 VAAKILLEMKTMGY-SVDV-SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETY 575 (827)
Q Consensus 498 ~A~~l~~~m~~~g~-~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 575 (827)
.|..+|-++.+.++ .+++ .+.+++. |-..|+..-|.++|+--... ..-+.......+.-+...++-+.|..+|+..
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIE-YYATGDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHH-HHhcCCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 88888888887773 3444 3344444 44457777777777754432 1122333344455566777888888888866
Q ss_pred HHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 003353 576 VESAAKVD--LVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615 (827)
Q Consensus 576 ~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~ 615 (827)
++. +.-+ ...|-.+|+.=..-|+...+..+-+.+...-|
T Consensus 493 v~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 493 VER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 543 2222 45677777776777777766666555554333
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.36 E-value=49 Score=38.50 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHhHh-------CCCCCCHHHHHHHHHHH
Q 003353 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY-----LAKADKLEMSYCCFKKVLD-------SDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 213 ~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~n~li~~~ 280 (827)
..+|...++.....+. ......+..+ +....+.+.|...|+...+ .| +....+.+..+|
T Consensus 228 ~~~a~~~~~~~a~~g~------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhcc------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 4578888888887763 3333333333 3456789999999988876 44 334566777777
Q ss_pred HHcC-----ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---
Q 003353 281 LNKG-----LPYKAFEIYESMEKGECSLDGSTYELMIPSLAK-SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG--- 351 (827)
Q Consensus 281 ~~~g-----~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~--- 351 (827)
.+.. +.+.|..++.+..+.|.+ +....-..+..... ..+...|.++|..+.+.|. ++ .+-.+..+|.
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~--A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-IL--AIYRLALCYELGL 374 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hH--HHHHHHHHHHhCC
Confidence 7743 567799999998887643 44433333322222 3567899999999999884 22 2222322222
Q ss_pred -hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 352 -KAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407 (827)
Q Consensus 352 -~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 407 (827)
-..+...|..++.+.-+.| .|...--...+..+.. ++++.+.-.+..+.+.|..
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 2347889999999998887 3332222233334444 7788887777777776643
No 280
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.20 E-value=6.8 Score=39.89 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CCHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--IDTQSYNVL 276 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~n~l 276 (827)
.|+.-+. +.+.|++.+|...|...++.. ++..-...++--|...+...|++++|..+|..+.+.-++ .-..+.--|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4444433 344555666666666666554 122223334444666666666666666666666553322 123445555
Q ss_pred HHHHHHcCChhHHHHHHHHhHhC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
.....+.|+-++|..+|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 55566666666666666666553
No 281
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.61 E-value=8.6 Score=44.93 Aligned_cols=118 Identities=18% Similarity=0.272 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003353 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF--NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385 (827)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 385 (827)
...-|....+...++.|..+-+ ..+..++. .......+-+.+.|++++|...|-+-... +.|. .+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 4445566666666666665432 22322221 11222233444567777777666555432 1221 234445
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003353 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTD 435 (827)
Q Consensus 386 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 435 (827)
....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 5555555566666666666654 444445566666666666665555443
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.80 E-value=44 Score=36.04 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
+|..+...+.+.|.++.|...+.++.+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 444444444445555555444444443
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.95 E-value=27 Score=32.77 Aligned_cols=93 Identities=19% Similarity=0.096 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 491 AKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570 (827)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 570 (827)
.+.++.++++.+++-+.-..+.....-..-...+.+.|++.+|.++|+++.+.. |....-..|+..|.....-.+=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHH
Confidence 456677788888877776544433332333345667888888888888876543 333334444444443322222233
Q ss_pred HHHHHHHCCCCCCHH
Q 003353 571 LLETYVESAAKVDLV 585 (827)
Q Consensus 571 ~~~~m~~~g~~pd~~ 585 (827)
.-+++.+.+..|+..
T Consensus 99 ~A~evle~~~d~~a~ 113 (160)
T PF09613_consen 99 YADEVLESGADPDAR 113 (160)
T ss_pred HHHHHHhcCCChHHH
Confidence 334455555444443
No 284
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.29 E-value=41 Score=34.14 Aligned_cols=207 Identities=10% Similarity=0.067 Sum_probs=129.0
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCC-
Q 003353 335 NFRPSFNIFASLVDSM-GKAGRLDTSMKVYMEMQGCGHRPS---APMYVSLIESYAKAGKLDTALRLWDEMRI---AGF- 406 (827)
Q Consensus 335 g~~p~~~t~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~- 406 (827)
+-.||+..-|..-..- .+..++++|+.-|.+..+.....- -.+.-.+|..+.+.|++++..+.+.+|.. +.+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4456665444322111 134578999999999886432222 33556788899999999999999988853 111
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC---
Q 003353 407 -RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA-----GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLR--- 477 (827)
Q Consensus 407 -~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--- 477 (827)
.-+..+.|++++......+.+.-...++.-.+. +-..--.|-+.|...|...+.+.+..+++.++....-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 224566788888777777777766666644321 11111224456777888888888888888888652110
Q ss_pred --------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CchHhHHHHHH-----HHHHcCCHHHHHHHHHHHh
Q 003353 478 --------PGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY-SVDVSASDVLM-----VYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 478 --------pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~li~-----~y~~~g~~~~A~~~~~~m~ 541 (827)
--...|..-|+.|....+-..-..++++.+.... -|.......|. +..+.|.+++|..-|-++-
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 0134677778888888888888888887765322 23333333333 4557788888876554444
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.09 E-value=42 Score=34.09 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=27.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 316 AKSGRLDAAIKLFQEMKERNF--RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
.+.|++++|.+.|+.+..+-. +-...+--.++-++.+.+++++|....++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 445566666666665554320 111233334445555666666666666655543
No 286
>PRK09687 putative lyase; Provisional
Probab=86.00 E-value=48 Score=34.69 Aligned_cols=119 Identities=9% Similarity=0.076 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG-KLDTALRLWDEMRIAGFRPNFGLFTMIIES 419 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 419 (827)
.+-...+.++++.++ ++|...+-.+.+ .+|...-...+.++.+.+ ....+...+..+.. .+|..+-...+.+
T Consensus 143 ~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a 215 (280)
T PRK09687 143 NVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 333444444444444 334444444443 223333333333343332 12334444444442 2344444445555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 420 HAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
+.+.|+ ..|...+-...+.+ + .....+.++...|.. +|+..+.++.+
T Consensus 216 Lg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 216 LALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555554 23443333333321 1 122344555555553 45555555554
No 287
>smart00463 SMR Small MutS-related domain.
Probab=85.88 E-value=1.9 Score=35.41 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=42.8
Q ss_pred hhcccCccchHHHHHHHHHHHHHHHHHHHhCCCCCceeeeecch---------hHHHHHHHHHhccCCCcee
Q 003353 700 WSLDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGP---------TLKIVIAQMLSSVESPFEV 762 (827)
Q Consensus 700 w~~~~~~~~~g~a~~~~~~~~~~~~~~m~~~g~~P~~~~~~tg~---------~~~~~~~~~l~~~~~pf~~ 762 (827)
|.+|+|.|+.+.|+..+..++..... .+. +..+.++||. .++..|..++...+.+|..
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~----~~~-~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~ 68 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARL----KGL-EQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAE 68 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHH----cCC-CceEEEEEcccCCCccchhhHHHHHHhchhhcccccCC
Confidence 78999999999998887766655543 232 2678999994 3677777778777777765
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.42 E-value=1.1 Score=29.97 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=11.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMS 254 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A 254 (827)
|.+..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 44555555555555555555544
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.01 E-value=34 Score=32.12 Aligned_cols=53 Identities=8% Similarity=-0.135 Sum_probs=29.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (827)
.+.++.+++..+++.+.-.. |.....-..-...+.+.|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR----P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR----PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666665544 444444444444556666666666666666543
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.69 E-value=1.9 Score=29.10 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 003353 659 VNVLLNYLVLMGQINRARCVWKVAYE 684 (827)
Q Consensus 659 ~n~Li~~l~k~G~~~~A~~v~~~~~~ 684 (827)
++.|+++|.+.|++++|.+++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56899999999999999999999653
No 291
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.36 E-value=94 Score=36.67 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=37.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-ch------Hh--HHHHHHHHHHcCCHHHHHHHHH--------HHhhCCCCCCHHHHHH
Q 003353 492 KRKLVDVAAKILLEMKTMGYS-VD------VS--ASDVLMVYIKDGSVDHALRWLR--------FMGSSGIRTNNFIVRQ 554 (827)
Q Consensus 492 ~~g~~~~A~~l~~~m~~~g~~-~~------~~--~~~li~~y~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~ 554 (827)
-.+++..|.+..+++....-. |+ .. .+.....+-..|+.+.|...|. .....+...+..++..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 467888888888888754211 11 11 2222223445688999999997 4555555555555543
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.83 E-value=40 Score=32.01 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=11.4
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCh
Q 003353 263 DSDCKIDTQSYNVLMTLFLNKGLP 286 (827)
Q Consensus 263 ~~g~~p~~~~~n~li~~~~~~g~~ 286 (827)
+.++.|+...|..+|+.+.+.|++
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCH
Confidence 344444444555555555544443
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.82 E-value=10 Score=39.15 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC---CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD---CKI--DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS 306 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p--~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 306 (827)
+....+-..++..-....++++++..+-+++... ..| ..++|-.++.- -++++++.++..-++.|+-||.+
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchh
Confidence 4444555555555556667777777776665421 111 22333333322 35778888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
+++.+|+.+.+.+++.+|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877776554
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.43 E-value=17 Score=35.16 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL--STYTALLTLLAKRKLVDVAAKILLEM 506 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~li~~~~~~g~~~~A~~l~~~m 506 (827)
.+..+...|++.|+.++|++.|.++.+....+.. ..+-.+|......+++..+.....++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444455555555555555555555443322221 23333444444444444444444433
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.22 E-value=27 Score=33.66 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN--NFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
.+..+.+-|++.|+.++|.+.|.++.+....+. ..++-.++..+.-.|++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566777777888888888888887776554444 23455566667777777777777666543
No 296
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.08 E-value=13 Score=35.87 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=42.8
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcC
Q 003353 455 HASSGQVDSAMKLYNSMTSAGLRPG------LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDG 528 (827)
Q Consensus 455 ~~~~g~~~~A~~l~~~m~~~g~~pd------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g 528 (827)
+.++|++++|..-|.+.++. .|. .+.|..-..++.+.+.++.|+.--...++.++........-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45566666666666666652 222 1223333334455555555555555555544433333333334455555
Q ss_pred CHHHHHHHHHHHhh
Q 003353 529 SVDHALRWLRFMGS 542 (827)
Q Consensus 529 ~~~~A~~~~~~m~~ 542 (827)
.+++|+.-|+++.+
T Consensus 183 k~eealeDyKki~E 196 (271)
T KOG4234|consen 183 KYEEALEDYKKILE 196 (271)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.81 E-value=1.2e+02 Score=35.86 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=56.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRP---SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA 388 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 388 (827)
|+-+.+.+.+++|.++.+..... .+ -...+...|+.+...|++++|-...-.|. ..+..-|..-+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccc
Confidence 44566667777777665544332 22 23456667777777777777777777776 33555666555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422 (827)
Q Consensus 389 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 422 (827)
++......++ .......+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 5544332222 111112334455555555544
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.78 E-value=17 Score=40.93 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=93.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003353 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286 (827)
Q Consensus 207 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~ 286 (827)
+.-.|+++.|..++..+. ....+.++..+-+.|-.++|+++- +|..- -.....+.|++
T Consensus 596 ~vmrrd~~~a~~vLp~I~----------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl 653 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP----------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRL 653 (794)
T ss_pred HhhhccccccccccccCc----------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcH
Confidence 345677777776655443 223455666677777777776542 22221 12234466777
Q ss_pred hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEM 366 (827)
Q Consensus 287 ~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 366 (827)
+.|.++..+.. +..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+-+....+-...
T Consensus 654 ~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 654 DIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred HHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH
Confidence 77777765543 456678888888888888888887777654 335666666677766666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 367 QGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 367 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
.+.| ..|. +| -+|...|+++++++++..-
T Consensus 719 ~~~g-~~N~-AF----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 719 KKQG-KNNL-AF----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred Hhhc-ccch-HH----HHHHHcCCHHHHHHHHHhc
Confidence 6665 2222 22 3456678888877776544
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.37 E-value=24 Score=34.44 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh---CCCCCCHHHHHHHHHHHHHcCChhHH
Q 003353 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD---SDCKIDTQSYNVLMTLFLNKGLPYKA 289 (827)
Q Consensus 214 ~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~n~li~~~~~~g~~~~A 289 (827)
++|++.|-.+...+. ..++.....|...|. ..+.++|..++.+..+ .+-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~---l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPE---LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCC---CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455666655555553 455555555555555 4456666666665543 22245666677777777777766665
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.24 E-value=83 Score=33.82 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=98.2
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CCCCHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKN-GISLFSAYNRVIQYLA 246 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~-~~~~~~~~~~li~~~~ 246 (827)
..+.-++++++..-+........ .++...|.++... +.++++++....+.+...-... .......|......+.
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~---~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED---SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC---ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 45566778887744443322221 2344444444433 7888888888888776642100 0112223333333444
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH-----cCChh---HHHHHHHHhHh--CCccCCHHHHHHHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN-----KGLPY---KAFEIYESMEK--GECSLDGSTYELMIPSLA 316 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~-----~g~~~---~A~~~~~~m~~--~g~~pd~~t~~~li~~~~ 316 (827)
+...+.|..++.+-..... .+......++..+.. ..+++ ..+.+=..+.. ........+|..+.+.+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 4443333333333221110 001112222222111 11111 11111111111 112234567888888999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 317 KSGRLDAAIKLFQEMKERNFRP---SFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 317 ~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
+.|.++.|...+..+.+.+... +..+.-.-+...-..|+..+|...+++...
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999998888754211 234444556677778888999998888776
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.24 E-value=1.2e+02 Score=35.70 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=68.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
++-+.+.+.+++|+.+.+.....-. ...-...+...|..+.-.|++++|-...-.|.. -+..-|.--+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~--~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEE--RFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcc--ccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 4556678888888888766543210 011345777888888888999999888888876 4677777777777776
Q ss_pred CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH
Q 003353 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~ 317 (827)
++..... .-+.......+...|..++..+..
T Consensus 437 ~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 6654332 223322223455667777777665
No 302
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.34 E-value=1e+02 Score=34.36 Aligned_cols=88 Identities=9% Similarity=0.177 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 003353 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCCF 258 (827)
Q Consensus 180 Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~ 258 (827)
...+|+.+..+ +..|+..|..-+.-+-+.+.+.+...+|.+|+... |.++..|-.-..-...-+ .++.|..+|
T Consensus 90 Iv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H----p~~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 90 IVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH----PNNPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCchhHHhhhhhHHhhccchHHHHHHH
Confidence 45667766665 56788899988888777887999999999998887 666776654444433333 388888888
Q ss_pred HHhHhCCCCCCHHHHH
Q 003353 259 KKVLDSDCKIDTQSYN 274 (827)
Q Consensus 259 ~~m~~~g~~p~~~~~n 274 (827)
.+-.+..+. +...|-
T Consensus 164 lrgLR~npd-sp~Lw~ 178 (568)
T KOG2396|consen 164 LRGLRFNPD-SPKLWK 178 (568)
T ss_pred HHHhhcCCC-ChHHHH
Confidence 877765543 444443
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=80.12 E-value=3.9 Score=27.51 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHH
Q 003353 448 YSCLLEMHASSGQVDSAMKLYNS 470 (827)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~l~~~ 470 (827)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.93 E-value=37 Score=31.41 Aligned_cols=52 Identities=13% Similarity=-0.019 Sum_probs=28.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (827)
..++.+++..+++.|.-.. |.....-..-...+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr----P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR----PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC----CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666665543 333333333344455666666666666666654
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.63 E-value=2.1 Score=28.49 Aligned_cols=31 Identities=10% Similarity=0.234 Sum_probs=15.9
Q ss_pred HHHHHCCCCchHhHHHHHHHHHHcCCHHHHH
Q 003353 504 LEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534 (827)
Q Consensus 504 ~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~ 534 (827)
+++++..+.....|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444444445555555555555555553
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.87 E-value=66 Score=31.26 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=57.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCchH---hHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 003353 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDV---SASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNA 563 (827)
Q Consensus 487 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~---~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 563 (827)
...+...|++++|+.-++..+........ .-..|.......|.+++|+..++...+.+.. ......-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 34566788888888888777654322221 2234555677788888888888766654322 112222345577888
Q ss_pred CHHHHHHHHHHHHHCC
Q 003353 564 LYESAKPLLETYVESA 579 (827)
Q Consensus 564 ~~~~A~~~~~~m~~~g 579 (827)
+-++|+..|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888887765
No 307
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.62 E-value=21 Score=34.64 Aligned_cols=93 Identities=17% Similarity=-0.028 Sum_probs=68.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCch-----HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 003353 488 TLLAKRKLVDVAAKILLEMKTMGYSVD-----VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN 562 (827)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~~~-----~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 562 (827)
+-+.+.|++++|..-|.++++..+... +.|..-..++.+.+.++.|+.-..+.++.+..- ...+..-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHHhh
Confidence 346678999999999999998765433 235555668889999999999888888765321 22222334568888
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q 003353 563 ALYESAKPLLETYVESAAK 581 (827)
Q Consensus 563 g~~~~A~~~~~~m~~~g~~ 581 (827)
..+++|++-++++.+..+.
T Consensus 182 ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhHHHHHHHHHHHHHhCcc
Confidence 8899999999998887665
No 308
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.02 E-value=90 Score=32.32 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=25.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
...|..+|.+.+|.++.+..+..+ +.+...|-.++..+...|+--.|.+-++.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344445555555555555544433 334444445555555555544444444433
No 309
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.76 E-value=1.5e+02 Score=34.88 Aligned_cols=186 Identities=14% Similarity=0.147 Sum_probs=95.1
Q ss_pred HHHHHHHHHhCCCCCCCHH--HHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCCCC--HHHHHHHHHHHHHcCCHHHH
Q 003353 180 SLSLFRWAKRQSWYVPGDE--CYVMLFDVLN-ESRDFDGMLSLFDEMVHDSSKNGISL--FSAYNRVIQYLAKADKLEMS 254 (827)
Q Consensus 180 Al~~f~~~~~~~~~~p~~~--~~~~li~~l~-~~g~~~~A~~l~~~m~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A 254 (827)
|++.++.+.++...+|..+ ++-.+...|. ...++++|+..+++.......+.-.+ ......++..|.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 5666666665433344333 4445566665 56778888888887655432101111 122334566666666555 7
Q ss_pred HHHHHHhHhCCCC----CCHHHHHHH-HHHHHHcCChhHHHHHHHHhHhCC---ccCCHHHHHHHHHHHHH--cCCHHHH
Q 003353 255 YCCFKKVLDSDCK----IDTQSYNVL-MTLFLNKGLPYKAFEIYESMEKGE---CSLDGSTYELMIPSLAK--SGRLDAA 324 (827)
Q Consensus 255 ~~~~~~m~~~g~~----p~~~~~n~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~t~~~li~~~~~--~g~~~~A 324 (827)
....++..+.--. +-...+..+ +..+...+++..|.+.++.+.... ..|-..++-.++.+... .+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 7777765542111 111222222 222223367777888887775432 22334444455554433 3445666
Q ss_pred HHHHHHHHHcCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 003353 325 IKLFQEMKERNF---------RPSFNIFASLVDSMG--KAGRLDTSMKVYMEM 366 (827)
Q Consensus 325 ~~~~~~m~~~g~---------~p~~~t~~~li~~~~--~~g~~~~A~~~~~~m 366 (827)
.+.++++..... .|-..+|..+++.++ ..|+++.+...++++
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666532211 234556666665544 456655665555444
No 310
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.49 E-value=63 Score=33.49 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=69.6
Q ss_pred cCChhHHHHHHHHHHH-cCCCCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHhH-hCCCCCCHHHHHHHHHHHHHcCC
Q 003353 210 SRDFDGMLSLFDEMVH-DSSKNGISLFSAYNRVIQYLAK-AD-KLEMSYCCFKKVL-DSDCKIDTQSYNVLMTLFLNKGL 285 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~-~~~~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~-~~g~~p~~~~~n~li~~~~~~g~ 285 (827)
+....+|+.+|+..-- ..+ -.|..+-..+++.... .+ ....-.++.+-+. ..+-.++..+-..+|..+++.++
T Consensus 141 N~~Vv~aL~L~~~~~~~~~I---i~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~d 217 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESI---IFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRD 217 (292)
T ss_pred hHHHHHHHHHhhccCcccce---eeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhccc
Confidence 4444566666652211 111 4445555555555444 11 1222222222222 12233555556666666777777
Q ss_pred hhHHHHHHHHhHhC-CccCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 003353 286 PYKAFEIYESMEKG-ECSLDGSTYELMIPSLAKSGRLDAAIKLFQE-----MKERNFRPSFNIFASLVDSM 350 (827)
Q Consensus 286 ~~~A~~~~~~m~~~-g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~t~~~li~~~ 350 (827)
|.+-.++++..... +..-|...|...|+.-.+.|+..-..++.++ +++.++..+...-..+-..+
T Consensus 218 W~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 218 WNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 77666666665544 4445666677777777777776666655543 23344555555444444433
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=77.26 E-value=5.6 Score=26.03 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444555555555555555555444
No 312
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.65 E-value=30 Score=35.94 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 003353 372 RPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG---FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448 (827)
Q Consensus 372 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 448 (827)
.....+...++..-....++++++..+-+++... ..|+...+ +.+..+. .-+.++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 3334444444444444555566665555554321 11111111 1122222 22445666666655566666666666
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 449 SCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 449 ~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
+.+|+.+.+.+++.+|..+...|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666655554
No 313
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.50 E-value=99 Score=32.02 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=25.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003353 417 IESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 471 (827)
...|..+|.+.+|.++.++.+..+. .+...|-.++..+...|+--.|.+-|+++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444555555555555555444321 23444445555555555544444444444
No 314
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.06 E-value=1.4e+02 Score=33.48 Aligned_cols=178 Identities=11% Similarity=0.079 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003353 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487 (827)
Q Consensus 408 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 487 (827)
.|....-+++..+..+-...-.+.+..+|...| .+...|..++..|.++ .-++-..+++++.+.. -|.+....-+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHH
Confidence 455666777788887777777788888888754 3667788888888887 5577778888887743 3333333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCch------HhHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHH
Q 003353 488 TLLAKRKLVDVAAKILLEMKTMGYSVD------VSASDVLMVYIKDGSVDHALRWLRFMGSS-GIRTNNFIVRQLFESCM 560 (827)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~~~------~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~ 560 (827)
..+...++.+.+..+|..+...-++.. ..|..++..- ..+.+.-..+..++.+. |..--.+.+.-+..-|.
T Consensus 139 a~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 139 ADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 333344777888888888776533211 1344443311 34566666666666542 33333445555556677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003353 561 KNALYESAKPLLETYVESAAKVDLVLYTSVLAH 593 (827)
Q Consensus 561 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 593 (827)
...++.+|++++...++.+-+ |+-.--.++.-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 778888888888888776555 55444445443
No 315
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.83 E-value=1.2e+02 Score=32.52 Aligned_cols=138 Identities=13% Similarity=0.058 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHhc------------CChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003353 194 VPGDECYVMLFDVLNES------------RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKV 261 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~------------g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 261 (827)
|.|..+|-.++..--.. .-.+.-+.+++++++.+ +.+...+..++..+.+....++..+.++++
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n----p~~~~L~l~~l~~~~~~~~~~~l~~~we~~ 91 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN----PDSERLLLGYLEEGEKVWDSEKLAKKWEEL 91 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45677776666433221 11356678888888886 888889989999999998888888889998
Q ss_pred HhCCCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHhHhC------Cc----cCCHHHH-------HHHHHHHHHcCCH
Q 003353 262 LDSDCKIDTQSYNVLMTLFLNK---GLPYKAFEIYESMEKG------EC----SLDGSTY-------ELMIPSLAKSGRL 321 (827)
Q Consensus 262 ~~~g~~p~~~~~n~li~~~~~~---g~~~~A~~~~~~m~~~------g~----~pd~~t~-------~~li~~~~~~g~~ 321 (827)
....+. +...|...|+..... -.++....+|.+..+. |. .+-..+. .-+...+..+|..
T Consensus 92 l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 92 LFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 876544 777888877765542 2455666665554321 11 0111111 2222233456777
Q ss_pred HHHHHHHHHHHHcCC
Q 003353 322 DAAIKLFQEMKERNF 336 (827)
Q Consensus 322 ~~A~~~~~~m~~~g~ 336 (827)
+.|..+++.+.+.++
T Consensus 171 E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 171 ERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHc
Confidence 777777777766654
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.62 E-value=7 Score=40.72 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=48.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003353 418 ESHAKSGKLDIAMSIFTDMERAGFLP-TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLV 496 (827)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~ 496 (827)
+-|.+.|.+++|++.|..-... .| +.+++..-..+|.+...+..|..--+..+... +.-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 3577777777777777665543 23 66666666677777777666665555554310 00111333333333334555
Q ss_pred HHHHHHHHHHHHCC
Q 003353 497 DVAAKILLEMKTMG 510 (827)
Q Consensus 497 ~~A~~l~~~m~~~g 510 (827)
++|.+-++..++..
T Consensus 182 ~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 182 MEAKKDCETVLALE 195 (536)
T ss_pred HHHHHhHHHHHhhC
Confidence 55555555555543
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.40 E-value=69 Score=29.68 Aligned_cols=53 Identities=21% Similarity=0.081 Sum_probs=35.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 003353 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544 (827)
Q Consensus 492 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 544 (827)
..++.++++.+++.|.-..++....-.--...+...|++++|.++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36777888888887776554433322223335667888888888888887654
No 318
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.62 E-value=3.2e+02 Score=36.91 Aligned_cols=315 Identities=10% Similarity=0.024 Sum_probs=167.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSDCK--IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK 317 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~ 317 (827)
.+..+-.+++.+.+|.-.++.-.....+ ....-|..+...|..-+++|....+...-.. +. ....-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHHHh
Confidence 4556777889999999999883211111 1223444555589999999988777764222 11 22334445677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHH
Q 003353 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL-IESYAKAGKLDTALR 396 (827)
Q Consensus 318 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~ 396 (827)
.|++..|...|+.+.+.+ ++...+++.++......|.++.+....+-..... .+....|+++ +.+--+.+++|....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999886 4557778888877777888888877666555432 3333344433 334457778877776
Q ss_pred HHHHHHHcCCCCCHHHHHHH--HHHHHhcCChh--HHHHHHHHHHHc--------CCC-CCHHHHHHHHHHHHHcCCHhH
Q 003353 397 LWDEMRIAGFRPNFGLFTMI--IESHAKSGKLD--IAMSIFTDMERA--------GFL-PTPSTYSCLLEMHASSGQVDS 463 (827)
Q Consensus 397 l~~~m~~~g~~pd~~t~~~l--i~~~~~~g~~~--~A~~~~~~m~~~--------g~~-p~~~t~~~li~~~~~~g~~~~ 463 (827)
.+. .. +..+|.+. .....+..+-| .-.+..+.+.+. +.. .-...|..++....-..-.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~-- 1610 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE-- 1610 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH--
Confidence 665 21 22233322 22222221111 111222222221 111 0112333333332211111
Q ss_pred HHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHH-HHHC----CCCch--HhHHHHHHHHHHcCCH
Q 003353 464 AMKLYNSMTSAGLRPGLS------TYTALLTLLAKRKLVDVAAKILLE-MKTM----GYSVD--VSASDVLMVYIKDGSV 530 (827)
Q Consensus 464 A~~l~~~m~~~g~~pd~~------t~~~li~~~~~~g~~~~A~~l~~~-m~~~----g~~~~--~~~~~li~~y~~~g~~ 530 (827)
...+.. .++.++.. -|..-+..-....+..+-+-.+++ +... +.+.. ..|........+.|++
T Consensus 1611 --~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1611 --NSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred --HHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 111111 11222221 222222211111111111111111 1111 22222 3677777788889999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003353 531 DHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES 578 (827)
Q Consensus 531 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 578 (827)
+.|...+-.+.+.+ .|... -....-....|+...|+.++++-++.
T Consensus 1687 q~A~nall~A~e~r-~~~i~--~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR-LPEIV--LERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHhhhhcc-cchHH--HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99998888777765 33332 23345677899999999999998754
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.36 E-value=5.9 Score=27.19 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003353 658 FVNVLLNYLVLMGQINRARCVWKVAYE 684 (827)
Q Consensus 658 ~~n~Li~~l~k~G~~~~A~~v~~~~~~ 684 (827)
+++.|...|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 467999999999999999999988865
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.35 E-value=5.8 Score=25.82 Aligned_cols=29 Identities=17% Similarity=0.016 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 659 VNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 659 ~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
+..++..|.+.|++++|.+.|+++++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 45799999999999999999999987654
No 321
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=74.24 E-value=6.2 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.052 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 658 FVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 658 ~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
+|..++..|...|++++|...|+++++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 456899999999999999999999987654
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.87 E-value=17 Score=35.73 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CCHHHHHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--IDTQSYNVLM 277 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~n~li 277 (827)
.+.-++.+.+.++..+|+.+.++-++.. |.+...-..+++.||-.|++++|..-++-.-+..++ +-...|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak----Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK----PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC----CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 4455677788888888888888888776 777778888888888888888888777766543322 3445666666
Q ss_pred HH
Q 003353 278 TL 279 (827)
Q Consensus 278 ~~ 279 (827)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 54
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.85 E-value=64 Score=36.67 Aligned_cols=134 Identities=14% Similarity=0.142 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 003353 161 VPKMVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNR 240 (827)
Q Consensus 161 ~p~~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~ 240 (827)
++....+..-|..++-.++|+++. +|++- -.....+.|+++.|.++..+. .+..-|..
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~iA~~la~e~---------~s~~Kw~~ 671 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLDIAFDLAVEA---------NSEVKWRQ 671 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHHHHHHHHHhh---------cchHHHHH
Confidence 455566777788888888787653 33322 223456789999998886553 35778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC
Q 003353 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320 (827)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~ 320 (827)
|.++..+.+++..|.++|.+..+ |..|+-.+...|+-+....+-....+.|.. ... .-+|...|+
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~--N~A----F~~~~l~g~ 736 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN--NLA----FLAYFLSGD 736 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc--chH----HHHHHHcCC
Confidence 99999999999999999987664 667888888888877666666666666543 222 335667899
Q ss_pred HHHHHHHHHHH
Q 003353 321 LDAAIKLFQEM 331 (827)
Q Consensus 321 ~~~A~~~~~~m 331 (827)
++++.+++..-
T Consensus 737 ~~~C~~lLi~t 747 (794)
T KOG0276|consen 737 YEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhc
Confidence 99998887654
No 324
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=72.02 E-value=1.4e+02 Score=31.83 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKERN-----FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG----CGHRPSAPMYV 379 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~ 379 (827)
-++..++...+.++++++.|+.+.+.. -.....++..|...|.+..|+++|.-...+..+ .++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345666667777788887777765431 112235677777888888888877665554432 22221111222
Q ss_pred H-----HHHHHHHcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 380 S-----LIESYAKAGKLDTALRLWDEMRI----AGFRP-NFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 380 ~-----li~~~~~~g~~~~A~~l~~~m~~----~g~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
. |.-++...|...+|.+.-++..+ .|-.+ -....-.+.+.|-..|+.|.|+.-|+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2 23345566666666666665443 22111 1222334556666677777666665543
No 325
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.95 E-value=1.1e+02 Score=30.61 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=7.9
Q ss_pred HcCCHHHHHHHHHHHhh
Q 003353 526 KDGSVDHALRWLRFMGS 542 (827)
Q Consensus 526 ~~g~~~~A~~~~~~m~~ 542 (827)
..+++.+|+++|++...
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555444443
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.39 E-value=50 Score=31.63 Aligned_cols=66 Identities=9% Similarity=-0.043 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHH---HhcCCh-------hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVL---NESRDF-------DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 178 ~~Al~~f~~~~~~~~~~p~~~~~~~li~~l---~~~g~~-------~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+.|.+-++....++ +.|.+.++.-..+| ++.... ++|..-|++.+... |....++..+..+|..
T Consensus 8 E~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~----P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 8 EHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN----PNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHH
Confidence 34455555444443 45666555433333 333333 34444444444444 5555666666666655
Q ss_pred cC
Q 003353 248 AD 249 (827)
Q Consensus 248 ~g 249 (827)
.+
T Consensus 82 ~A 83 (186)
T PF06552_consen 82 LA 83 (186)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 327
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.74 E-value=1.4e+02 Score=31.09 Aligned_cols=116 Identities=10% Similarity=0.222 Sum_probs=65.5
Q ss_pred CChhHHHHHHHHhHh-CCccCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003353 284 GLPYKAFEIYESMEK-GECSLDGSTYELMIPSLAK-SG-RLDAAIKLFQEMKER-NFRPSFNIFASLVDSMGKAGRLDTS 359 (827)
Q Consensus 284 g~~~~A~~~~~~m~~-~g~~pd~~t~~~li~~~~~-~g-~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A 359 (827)
....+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..+++.+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566666663221 1233466666666665554 11 222233333333322 2355666666777777777777777
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003353 360 MKVYMEMQGC-GHRPSAPMYVSLIESYAKAGKLDTALRLWD 399 (827)
Q Consensus 360 ~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 399 (827)
.++++.-... +...|...|..+|....+.|+..-..++.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 7777666544 445566777777777777777665544444
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.63 E-value=26 Score=29.65 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592 (827)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 592 (827)
.=++.+-++.+...++.|++.++.+.+.+|.+.+++..|.++|+-.+.+. ..+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 33556666667777888888888888888888888888888888766331 113445665553
No 329
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=70.09 E-value=12 Score=24.28 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHD 226 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~ 226 (827)
|..+...+.+.|++++|++.|++.++.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444444445555555555555544443
No 330
>PRK09687 putative lyase; Provisional
Probab=69.42 E-value=1.5e+02 Score=30.98 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=11.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003353 555 LFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 555 ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
.+.++...|.. +|+..+.++.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHh
Confidence 34455555553 45555555554
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=67.86 E-value=12 Score=24.41 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 003353 659 VNVLLNYLVLMGQINRARCVWKVAYENK 686 (827)
Q Consensus 659 ~n~Li~~l~k~G~~~~A~~v~~~~~~~~ 686 (827)
|..++..|...|+.++|.+.|+++++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4589999999999999999999987654
No 332
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.50 E-value=1.3e+02 Score=29.40 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=38.3
Q ss_pred HHHcCChhHHHHHHHHhHhCCccCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELM-----IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 354 (827)
+...|++++|..-++..... |....+..+ .+.....|.+|+|+..++...+.+..+ .....-.+.+...|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg 173 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKG 173 (207)
T ss_pred HHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcC
Confidence 44455555555555544432 222222222 223444555555555555544443211 12223344555555
Q ss_pred CHHHHHHHHHHHHhC
Q 003353 355 RLDTSMKVYMEMQGC 369 (827)
Q Consensus 355 ~~~~A~~~~~~m~~~ 369 (827)
+-++|..-|.+....
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 555555555555543
No 333
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.46 E-value=1.4e+02 Score=29.95 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=17.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCch
Q 003353 490 LAKRKLVDVAAKILLEMKTMGYSVD 514 (827)
Q Consensus 490 ~~~~g~~~~A~~l~~~m~~~g~~~~ 514 (827)
-+..+++.+|+.+|++..+..+..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch
Confidence 3456777888888888777666555
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=66.86 E-value=13 Score=25.42 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVL 262 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (827)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555554443
No 335
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.35 E-value=3.1e+02 Score=33.48 Aligned_cols=116 Identities=19% Similarity=0.124 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCCHHHHH--
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN---FGLFTMIIESHAKSGKL--DIAMSIFTDMERAGFLPTPSTYS-- 449 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~-- 449 (827)
-|..|+..|...|+.++|+++|.+..+..-.-| ..-+--+++-+.+.+.. +-.++.-+...+....-....++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 366777777777777777777777765210001 11122234444444433 33333333322221110000010
Q ss_pred ----------HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003353 450 ----------CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492 (827)
Q Consensus 450 ----------~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 492 (827)
..+-.|......+-+...++.+....-.++..-.+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233455666677777778877765445566666666666654
No 336
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.70 E-value=47 Score=31.84 Aligned_cols=111 Identities=13% Similarity=0.063 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH---cCC-------HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 003353 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK---ADK-------LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282 (827)
Q Consensus 213 ~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~---~g~-------~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~ 282 (827)
|+.|.+-++.....+ |.|...++.-..++.. ... +++|+.-|++.+...+. ...++..+..+|..
T Consensus 7 FE~ark~aea~y~~n----P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN----PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 466667777666665 7777665554444433 333 44555555555554433 33566666666655
Q ss_pred cC----C-------hhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 283 KG----L-------PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF 336 (827)
Q Consensus 283 ~g----~-------~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 336 (827)
.+ + +++|.+.|++..+ ..|+..+|+.-+.... +|-+++.++.+.+.
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 43 2 4455555555554 4688888887777653 35666666666543
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.67 E-value=49 Score=32.34 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=17.4
Q ss_pred CCHhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003353 459 GQVDSAMKLYNSMTSA---GLRPGLSTYTALLTLLAKRKLVDVA 499 (827)
Q Consensus 459 g~~~~A~~l~~~m~~~---g~~pd~~t~~~li~~~~~~g~~~~A 499 (827)
.+.+++..++.+..+. +-.+|+..+.+|++.+.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444331 1134444444444444444444443
No 338
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.14 E-value=1.1e+02 Score=35.76 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 003353 388 AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427 (827)
Q Consensus 388 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 427 (827)
.|+...+++....+.. |..+-..+.+.+...|-++
T Consensus 310 ~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 310 EGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS-
T ss_pred ccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccc
Confidence 5677777666665532 3345555666666666555
No 339
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=64.77 E-value=1.8e+02 Score=30.28 Aligned_cols=148 Identities=15% Similarity=0.084 Sum_probs=77.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH---
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN----ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK--- 247 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~--- 247 (827)
+++..|...+..+.... +......+...+. ...+..+|...|..+...+. ......|..+|..
T Consensus 55 ~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~------~~a~~~lg~~~~~G~g 124 (292)
T COG0790 55 PDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL------AEALFNLGLMYANGRG 124 (292)
T ss_pred ccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc------HHHHHhHHHHHhcCCC
Confidence 45556677776665532 2233444444443 34456778888886666553 4555556666655
Q ss_pred -cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC-------ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH--
Q 003353 248 -ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG-------LPYKAFEIYESMEKGECSLDGSTYELMIPSLAK-- 317 (827)
Q Consensus 248 -~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g-------~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~-- 317 (827)
..+..+|...|++.-+.|..+...+...+...|.... +...|...|.+....+ +......+...|..
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGL 201 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCC
Confidence 3477778888887777665432222333444443321 1124566666655554 23333333333322
Q ss_pred --cCCHHHHHHHHHHHHHcC
Q 003353 318 --SGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 318 --~g~~~~A~~~~~~m~~~g 335 (827)
..+.++|...|....+.|
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 234555666666655555
No 340
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=64.64 E-value=75 Score=27.33 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 003353 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES-AAKVDLVLYTSVLA 592 (827)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~ 592 (827)
+..+-+..+...++.|++.++.+.+.+|.+..++..|.++|+-...+ |.+ ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 56666677777788888888888888999999999999988877653 222 226665553
No 341
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=64.45 E-value=42 Score=28.46 Aligned_cols=44 Identities=7% Similarity=0.084 Sum_probs=25.8
Q ss_pred HHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 289 A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
+.+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444445555555666666666666666666666666666555
No 342
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=62.00 E-value=28 Score=36.55 Aligned_cols=89 Identities=11% Similarity=-0.049 Sum_probs=54.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSV 530 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~ 530 (827)
.+-|.+.|.+++|+..|..... +.| |.+++..-..+|.+...+..|+.--..++..+-.-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4567788888888888877766 456 7777777777888887777777666555543211112333333344444555
Q ss_pred HHHHHHHHHHhh
Q 003353 531 DHALRWLRFMGS 542 (827)
Q Consensus 531 ~~A~~~~~~m~~ 542 (827)
.+|.+-++..++
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555543
No 343
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=61.64 E-value=51 Score=28.31 Aligned_cols=47 Identities=6% Similarity=0.116 Sum_probs=28.2
Q ss_pred HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555555666677777777777777777777777777766644
No 344
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.62 E-value=23 Score=30.99 Aligned_cols=27 Identities=15% Similarity=0.003 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003353 658 FVNVLLNYLVLMGQINRARCVWKVAYE 684 (827)
Q Consensus 658 ~~n~Li~~l~k~G~~~~A~~v~~~~~~ 684 (827)
-|..|++.|...|+.++|.++|.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467999999999999999999988766
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.44 E-value=76 Score=27.18 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=26.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCC
Q 003353 242 IQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300 (827)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g 300 (827)
+..+...|++++|..+.+.+ +.||...|-+|-.. +.|..+++..-+.+|...|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 33445555555555555444 23566665554332 3444454444454554443
No 346
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.88 E-value=3.7e+02 Score=32.49 Aligned_cols=224 Identities=17% Similarity=0.089 Sum_probs=113.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRPSF-------NIFASLV-DSMGKAGRLDTSMKVYMEMQGC----GHRPSAPMYVSLIE 383 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li-~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~ 383 (827)
....++++|..+++++...=-.|+. ..|+.|- ......|++++|+++.+..... -..+.++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567888888888887654212221 1344332 2233467888888887776542 22345566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---H--HHHHHhcCCh--hHHHHHHHHHHHcCC--C----CCHHHHHH
Q 003353 384 SYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM---I--IESHAKSGKL--DIAMSIFTDMERAGF--L----PTPSTYSC 450 (827)
Q Consensus 384 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~---l--i~~~~~~g~~--~~A~~~~~~m~~~g~--~----p~~~t~~~ 450 (827)
+..-.|++++|..+..+..+..-.-|...+.. + ...+...|+. .+....|........ + +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77788899988888877665422223333322 2 2234445632 223333333322100 0 12234444
Q ss_pred HHHHHHHc-CCHhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--hHhHHHH---H-
Q 003353 451 LLEMHASS-GQVDSAMKLYNSMTSAGLRPGLSTY--TALLTLLAKRKLVDVAAKILLEMKTMGYSV--DVSASDV---L- 521 (827)
Q Consensus 451 li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~t~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~~--~~~~~~l---i- 521 (827)
+..++.+. +...+|..-+.-.......|-...+ ..|+......|++++|...++++......+ .+.|.+. +
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 44444441 1122222222222222222222222 245556667888888888888776643332 3322222 2
Q ss_pred -HHHHHcCCHHHHHHHHHH
Q 003353 522 -MVYIKDGSVDHALRWLRF 539 (827)
Q Consensus 522 -~~y~~~g~~~~A~~~~~~ 539 (827)
......|+.++|.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 233456777777766655
No 347
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.72 E-value=30 Score=34.58 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=72.4
Q ss_pred hhcccccccccCCccccCCCCCccccccCcCCCCCCHHHHHHHHHHHHcCCCCccHHHHhhhCCCCCCHHH----HHHHH
Q 003353 96 LDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH----ITQAL 171 (827)
Q Consensus 96 ~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p~~~~----~~~~l 171 (827)
+.+.|.-.+..+++-.++.+|-++|..+ |....-+-.++.-.++..+|.+..++...++.+.|+..- +...+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~n----P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICIN----PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcC----CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 5567777777777878888888888777 654344557777777788888888888888877776643 35555
Q ss_pred HccCChhHHHHHHHHHHh---CCCCCCCHHHHHHHHHH
Q 003353 172 KVINDSDTSLSLFRWAKR---QSWYVPGDECYVMLFDV 206 (827)
Q Consensus 172 ~~~~~~~~Al~~f~~~~~---~~~~~p~~~~~~~li~~ 206 (827)
.....+++|+..+..+.. ...+++..+.+..|..+
T Consensus 89 l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 566677777777776622 23345555566665543
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.29 E-value=47 Score=32.81 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC--CccCCHHHHHHHHHH
Q 003353 239 NRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG--ECSLDGSTYELMIPS 314 (827)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~li~~ 314 (827)
+..++.+.+.+.+++|+...+.-.+..+. |..+-..++..||-.|+|++|..-++-.-.. ...+...+|..+|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 33455556666666666666655554443 5555566666666666666666555544332 122334455555543
No 349
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.35 E-value=1.2e+02 Score=33.51 Aligned_cols=12 Identities=8% Similarity=-0.130 Sum_probs=5.5
Q ss_pred HHHHHHhcCCHH
Q 003353 346 LVDSMGKAGRLD 357 (827)
Q Consensus 346 li~~~~~~g~~~ 357 (827)
.+...+..|+.+
T Consensus 38 pL~~A~~~~~~~ 49 (413)
T PHA02875 38 PIKLAMKFRDSE 49 (413)
T ss_pred HHHHHHHcCCHH
Confidence 334444455543
No 350
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.28 E-value=3.3e+02 Score=31.32 Aligned_cols=181 Identities=13% Similarity=0.049 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488 (827)
Q Consensus 409 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 488 (827)
+..+|..-++--.+.|+.+.+.-+|++..-. +..=...|--.+.-....|+.+-|..++....+--+ |+......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHHH
Confidence 3566666677777777777777777766531 011122333344444444777777766665554322 22222222222
Q ss_pred HH-HhcCCHHHHHHHHHHHHHCCCCchH--hHHHHHHHHHHcCCHHHHH---HHHHHHhhCCCCCCHHHHHHHHH-----
Q 003353 489 LL-AKRKLVDVAAKILLEMKTMGYSVDV--SASDVLMVYIKDGSVDHAL---RWLRFMGSSGIRTNNFIVRQLFE----- 557 (827)
Q Consensus 489 ~~-~~~g~~~~A~~l~~~m~~~g~~~~~--~~~~li~~y~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~ll~----- 557 (827)
.+ -..|++..|..+++.+...- |.. ....-+..-.+.|+.+.+. .++....+... +..+...+.-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARL 449 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHH
Confidence 23 33668888888888877654 442 2233344556677777776 33333332111 1111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003353 558 SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVR 596 (827)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 596 (827)
.+.-.++.+.|..++.++.+. ..++...|..+++-...
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 133457788888888888775 33466677776665443
No 351
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=58.41 E-value=17 Score=23.56 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 003353 448 YSCLLEMHASSGQVDSAMKLYNSMT 472 (827)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~l~~~m~ 472 (827)
|..+...|.+.|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 352
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=56.66 E-value=2.9 Score=38.61 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=16.6
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI 292 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~ 292 (827)
.+..+.....++.+...+...+....+.++..|++.+..++..++
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 20 RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHH
Confidence 333333333344333333223334444444444444333333333
No 353
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=56.46 E-value=3 Score=38.58 Aligned_cols=53 Identities=9% Similarity=0.172 Sum_probs=28.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYM 364 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 364 (827)
+..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444555555555666666555444445556666666666655555555554
No 354
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.07 E-value=4.3e+02 Score=31.41 Aligned_cols=405 Identities=9% Similarity=-0.026 Sum_probs=205.9
Q ss_pred ccHHHHhhhCCCCCCHHHH----HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 149 PELETQLDKLQFVPKMVHI----TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMV 224 (827)
Q Consensus 149 ~~~~~~l~~~~~~p~~~~~----~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~ 224 (827)
.++..++.+..-.|-...+ ...|..-++++..++++ .. .+.+...-.....++...|+-++|.+....+-
T Consensus 83 ~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~--~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW 156 (644)
T PRK11619 83 VQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PE--KPKPVEARCNYYYAKWATGQQQEAWQGAKELW 156 (644)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3566666666555544433 22333445665545422 11 14555566677788888999888888888887
Q ss_pred HcCCCCCCCCHHHHHHHHHHHHHcCCHHHH--HHHHHHhHhCCCCCCHHHHHHHHHHHHH------------cCChhHHH
Q 003353 225 HDSSKNGISLFSAYNRVIQYLAKADKLEMS--YCCFKKVLDSDCKIDTQSYNVLMTLFLN------------KGLPYKAF 290 (827)
Q Consensus 225 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~m~~~g~~p~~~~~n~li~~~~~------------~g~~~~A~ 290 (827)
..+ ...+..++.++..+.+.|.+... .+=++.+...| +...-..+...+.. ..+...+.
T Consensus 157 ~~g----~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~ 229 (644)
T PRK11619 157 LTG----KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVE 229 (644)
T ss_pred ccC----CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHH
Confidence 776 66677888888888877654332 22222222221 22222222221100 01112221
Q ss_pred HHHHHhHhCCccCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 291 EIYESMEKGECSLDGSTYELMIPSLA--KSGRLDAAIKLFQEMKERN-FRPS--FNIFASLVDSMGKAGRLDTSMKVYME 365 (827)
Q Consensus 291 ~~~~~m~~~g~~pd~~t~~~li~~~~--~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~ 365 (827)
.++.. +.|+...-..++-++. ...+.+.|..++....... +.+. ..++..+....+..+...+|...++.
T Consensus 230 ~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~ 304 (644)
T PRK11619 230 TFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDD 304 (644)
T ss_pred HHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHh
Confidence 11111 1223322222222222 2345688888888764443 2222 12344444333343335666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 003353 366 MQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445 (827)
Q Consensus 366 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 445 (827)
..... .|......-+..-.+.++++.+...+..|....-. ...-.--+..++...|+.++|...|+.+... .
T Consensus 305 ~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~-- 376 (644)
T PRK11619 305 VIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R-- 376 (644)
T ss_pred ccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--
Confidence 54332 24444444555556888999888888887553222 3333344667777789999999999987431 1
Q ss_pred HHHHHHHHHHHHcCCHhHH-HHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHH
Q 003353 446 STYSCLLEMHASSGQVDSA-MKLY-NSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523 (827)
Q Consensus 446 ~t~~~li~~~~~~g~~~~A-~~l~-~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~ 523 (827)
+|-.++.+ .+.|..-.- .... ..... +.-+ .-..-+..+...|....|...+..+... .. +.....+...
T Consensus 377 -~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~--~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~-~~~~~~la~~ 448 (644)
T PRK11619 377 -GFYPMVAA-QRLGEEYPLKIDKAPKPDSA--LTQG--PEMARVRELMYWNMDNTARSEWANLVAS-RS-KTEQAQLARY 448 (644)
T ss_pred -CcHHHHHH-HHcCCCCCCCCCCCCchhhh--hccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC-HHHHHHHHHH
Confidence 23333221 112221000 0000 00000 0001 1122345667788999999888888774 22 2333444445
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003353 524 YIKDGSVDHALRWLRFMGSSGIR--TNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLY 587 (827)
Q Consensus 524 y~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 587 (827)
-.+.|..+.++.........+.. --...|...+..+.+.-.++.++-.---..|.++.|+.+..
T Consensus 449 A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S~ 514 (644)
T PRK11619 449 AFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARSP 514 (644)
T ss_pred HHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCccC
Confidence 55677777777666543221100 00112444556666665666665444444577888887643
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.92 E-value=1.4e+02 Score=33.01 Aligned_cols=76 Identities=12% Similarity=0.025 Sum_probs=33.9
Q ss_pred HHcCCHHHHHHHHHHhHhCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHH--HHHHHHHHHHHcCCH
Q 003353 246 AKADKLEMSYCCFKKVLDSDCKIDTQS--YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGS--TYELMIPSLAKSGRL 321 (827)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~--~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~li~~~~~~g~~ 321 (827)
++.|..+-+..++ +.|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...++.|+.
T Consensus 10 ~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 4445554443333 3454444322 223344444556654 333334444444322 112334455666776
Q ss_pred HHHHHHHH
Q 003353 322 DAAIKLFQ 329 (827)
Q Consensus 322 ~~A~~~~~ 329 (827)
+.+..+++
T Consensus 82 ~~v~~Ll~ 89 (413)
T PHA02875 82 KAVEELLD 89 (413)
T ss_pred HHHHHHHH
Confidence 66555443
No 356
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.20 E-value=2.8e+02 Score=29.03 Aligned_cols=30 Identities=10% Similarity=-0.178 Sum_probs=19.9
Q ss_pred HHcCCCCccHHHHhhhCCCCCCHHHHHHHH
Q 003353 142 VNRWKWGPELETQLDKLQFVPKMVHITQAL 171 (827)
Q Consensus 142 l~~~~~~~~~~~~l~~~~~~p~~~~~~~~l 171 (827)
.........++..+...|...+...+..++
T Consensus 40 ~~~~gdle~vak~ldssg~~l~~~rYgd~~ 69 (412)
T KOG2297|consen 40 EDNAGDLELVAKSLDSSGNDLDYRRYGDIL 69 (412)
T ss_pred HhcCccHHHHHHHHHhccccccHHHHHHHH
Confidence 334445567888888888877776654443
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=53.16 E-value=15 Score=22.51 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHHHHcCChhHHHHHHH
Q 003353 661 VLLNYLVLMGQINRARCVWK 680 (827)
Q Consensus 661 ~Li~~l~k~G~~~~A~~v~~ 680 (827)
.|...|...|+.++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 78999999999999999875
No 358
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=52.32 E-value=23 Score=22.54 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=9.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 003353 204 FDVLNESRDFDGMLSLFDEMVH 225 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~ 225 (827)
..++.+.|++++|.+.|++++.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 359
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=52.05 E-value=4.7e+02 Score=30.98 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 371 HRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 371 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
..|| |-.+..+|.-..+.+.|.++++++.+.
T Consensus 209 ~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 209 PSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred CCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 3555 445667777788888888888888874
No 360
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.24 E-value=3e+02 Score=28.51 Aligned_cols=160 Identities=15% Similarity=0.122 Sum_probs=79.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHH
Q 003353 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYV-------SLIESYAKAGKLDTALRLWDEMRI----AGFRPNFGLFT 414 (827)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd~~t~~ 414 (827)
+.+-..+.+++++|+..+.++...|+..|..+.| .+...|...|++..--+......+ -.-........
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4455667788888888888888888777665543 345566666666554444433221 11111233344
Q ss_pred HHHHHHHh-cCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHhHHHHHHHHHH----HCCCCCCHHHHH
Q 003353 415 MIIESHAK-SGKLDIAMSIFTDMERAGFLPTP-----STYSCLLEMHASSGQVDSAMKLYNSMT----SAGLRPGLSTYT 484 (827)
Q Consensus 415 ~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~pd~~t~~ 484 (827)
++|+.+.. ...++.-..+.....+...+... ..-..+|..+.+.|++.+|+.+.+.+. +-.-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 45554433 23455555555544432111111 112335556666666666665544332 223344443332
Q ss_pred HHH-HHHHhcCCHHHHHHHHHH
Q 003353 485 ALL-TLLAKRKLVDVAAKILLE 505 (827)
Q Consensus 485 ~li-~~~~~~g~~~~A~~l~~~ 505 (827)
.+= .+|....++.++..-+..
T Consensus 169 llESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHH
Confidence 222 244444444444444433
No 361
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.65 E-value=4.2e+02 Score=29.96 Aligned_cols=179 Identities=9% Similarity=0.068 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003353 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLI 382 (827)
Q Consensus 303 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 382 (827)
.|.....+++..+.....+.-...+..+|...| .+...|..++.+|... .-++-..+++++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 456667778888888888888888888888765 3556778888888877 556677788877776543 444444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 003353 383 ESYAKAGKLDTALRLWDEMRIAGFRP-----NFGLFTMIIESHAKSGKLDIAMSIFTDMER-AGFLPTPSTYSCLLEMHA 456 (827)
Q Consensus 383 ~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~ 456 (827)
..|-+ ++.+.+...|.+...+=+.. -...|.-++... ..+.|....+...+.. .|...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55554 77788888888776542210 112344443321 2455666666666653 344444556666666777
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003353 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTL 489 (827)
Q Consensus 457 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 489 (827)
...++.+|++++...++.. .-|...-..++.-
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 7778888888887777643 2244444444443
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.62 E-value=1.7e+02 Score=30.23 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK---- 387 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 387 (827)
|.+++..++|.++....-+--+.--+........-|-.|.|.+....+.++-..-...--.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555544333222111111133333344455556555555555544432112223335554444433
Q ss_pred -cCCHHHHHHHH
Q 003353 388 -AGKLDTALRLW 398 (827)
Q Consensus 388 -~g~~~~A~~l~ 398 (827)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555544
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.54 E-value=5.4e+02 Score=31.22 Aligned_cols=225 Identities=13% Similarity=0.063 Sum_probs=122.1
Q ss_pred HHcCChhHHHHHHHHhHhCCccCC----H---HHHHHHHHH-HHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 003353 281 LNKGLPYKAFEIYESMEKGECSLD----G---STYELMIPS-LAKSGRLDAAIKLFQEMKER----NFRPSFNIFASLVD 348 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~~g~~pd----~---~t~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~li~ 348 (827)
...+++.+|..+..+....-..|+ . ..++.+-.. ....|++++|.++-+..... -..+..+.+.++..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 346889999988888755322222 1 134433332 23467889988888776643 23355677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHH--HHHHHcCC--HHHHHHHHHHHHHc-----CC-CCCHHHHHH
Q 003353 349 SMGKAGRLDTSMKVYMEMQGCGHRPSAPMY---VSLI--ESYAKAGK--LDTALRLWDEMRIA-----GF-RPNFGLFTM 415 (827)
Q Consensus 349 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li--~~~~~~g~--~~~A~~l~~~m~~~-----g~-~pd~~t~~~ 415 (827)
+..-.|++++|..+..+..+..-.-++..+ ..+. ..+...|+ +.+.+..|...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999988776653223343333 2222 23445563 33333444333221 11 112234444
Q ss_pred HHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHhHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 003353 416 IIESHAK-SGKLDIAMSIFTDMERAGFLPTPSTY--SCLLEMHASSGQVDSAMKLYNSMTSAGLRP----GLSTYTALLT 488 (827)
Q Consensus 416 li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~li~ 488 (827)
+..++.+ .+...+|..-+.--......|-...+ ..|+..+...|+.++|...++++......+ +..+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 5555544 11222222222222222222222222 367788888999999999999988643322 3333333333
Q ss_pred H--HHhcCCHHHHHHHHHH
Q 003353 489 L--LAKRKLVDVAAKILLE 505 (827)
Q Consensus 489 ~--~~~~g~~~~A~~l~~~ 505 (827)
. ....|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2347888877766655
No 364
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.24 E-value=3.1e+02 Score=28.43 Aligned_cols=95 Identities=12% Similarity=0.087 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCchHhHH--HHHHHHHHcCCHHHHHHHHHHHhhCCCCCC----H
Q 003353 480 LSTYTALLTLLAKRKLVDVAAKILLEM----KTMGYSVDVSAS--DVLMVYIKDGSVDHALRWLRFMGSSGIRTN----N 549 (827)
Q Consensus 480 ~~t~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~~~~~~~--~li~~y~~~g~~~~A~~~~~~m~~~~~~p~----~ 549 (827)
...+..+..-|++.++.+.+.+...+. ...|.+.|+.+. .|...|....-+++-++..+.|.++|...+ .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 345556666677777766666555443 334556665332 344455555556677777777777765432 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 550 FIVRQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 550 ~~~~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
.+|..+ -+....++.+|-.+|-..+
T Consensus 195 K~Y~Gi--~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGI--FKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHH--HHHHHHhhHHHHHHHHHHh
Confidence 233222 1233445666666665544
No 365
>PRK10941 hypothetical protein; Provisional
Probab=48.75 E-value=1.9e+02 Score=30.05 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=26.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003353 241 VIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297 (827)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~ 297 (827)
+-.+|.+.++++.|.++.+.+....+. |..-+.--.-.|.+.|.+..|..=++..+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 444445555555555555555444332 33334444444555555555555444443
No 366
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.64 E-value=2.6e+02 Score=28.34 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVYM 364 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~~ 364 (827)
..+..|..+--+.-...+..++.+
T Consensus 118 di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 118 DIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred hHHHHHHHHHhCccchhHHHHHHH
Confidence 344444444444444444444433
No 367
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.82 E-value=5.9e+02 Score=30.87 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
+.-..+...|+.+++..+-.-|. -|..++.-+++.+.+++|++++..-
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344455666666665555444 2566777788888888888877653
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=47.69 E-value=31 Score=20.87 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 003353 658 FVNVLLNYLVLMGQINRARCVWKVAYENK 686 (827)
Q Consensus 658 ~~n~Li~~l~k~G~~~~A~~v~~~~~~~~ 686 (827)
.+..++..|...|+.++|...++.+++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 35588999999999999999998887643
No 369
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=47.67 E-value=29 Score=22.04 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
.+..++.+.|++++|.+.|+++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 345555556666666666666554
No 370
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=47.36 E-value=38 Score=27.84 Aligned_cols=53 Identities=28% Similarity=0.459 Sum_probs=32.9
Q ss_pred cccCccchHHHHHHHHHHHHHHHHHHHhCCCCCceeeeecchh-------HHHHHHHHHhccCCCce
Q 003353 702 LDVRNLSVGAALIAVMHTLHRFRKRMLYYGVVPRRIKLVTGPT-------LKIVIAQMLSSVESPFE 761 (827)
Q Consensus 702 ~~~~~~~~g~a~~~~~~~~~~~~~~m~~~g~~P~~~~~~tg~~-------~~~~~~~~l~~~~~pf~ 761 (827)
+|+|.|+...|+..+...+. .....+. ..+.++||.+ ++..|...|.+ +..+.
T Consensus 1 iDLHG~~~~eA~~~l~~~l~----~~~~~~~--~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~~~ 60 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLD----EARQRGI--RELRIITGKGNHSKGGVLKRAVRRWLEE-GYQYE 60 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHH----HHHHTTH--SEEEEE--STCTCCTSHHHHHHHHHHHH-THCCT
T ss_pred CCCCCCcHHHHHHHHHHHHH----HHHHcCC--CEEEEEeccCCCCCCCcHHHHHHHHHHh-hhccc
Confidence 47888888887766554444 3333333 7888999854 88999999977 54333
No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.05 E-value=40 Score=24.03 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=10.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHh
Q 003353 520 VLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 520 li~~y~~~g~~~~A~~~~~~m~ 541 (827)
|..+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444555555555555555444
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=46.76 E-value=4.5e+02 Score=29.29 Aligned_cols=117 Identities=10% Similarity=-0.009 Sum_probs=78.1
Q ss_pred CChhHH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 175 NDSDTS-LSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEM 253 (827)
Q Consensus 175 ~~~~~A-l~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (827)
||...| .++|+-++++++ .|+.....+ ......|+++.+.+.+......- .....+...++...-+.|++++
T Consensus 303 gd~~aas~~~~~~lr~~~~-~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~----~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQ-DPVLIQLRS--VIFSHLGYYEQAYQDISDVEKII----GTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred cCHHHHHHHHHHHHHhCCC-CchhhHHHH--HHHHHhhhHHHHHHHhhchhhhh----cCCchHHHHHHHhhhchhhHHH
Confidence 444433 456665555543 344433333 44577899999999988776543 5556788889999999999999
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 254 SYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 254 A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
|..+-+.|....++ +......-....-+.|.++++.-.+++....
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 99999988877665 4333333222334457788888888877653
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=44.84 E-value=1.6e+02 Score=25.29 Aligned_cols=52 Identities=21% Similarity=0.120 Sum_probs=32.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 003353 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK 614 (827)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~ 614 (827)
.++...|+|++|..+.+.+ ..||...|-+|-. .|.|-.++...-+..|..++
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 4566777888877776665 5778777777653 35566665555444444443
No 374
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.86 E-value=3.5e+02 Score=27.18 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=10.1
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 003353 203 LFDVLNESRDFDGMLSLFDEM 223 (827)
Q Consensus 203 li~~l~~~g~~~~A~~l~~~m 223 (827)
++.++...|+.+.|..++..+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444455555555554443
No 375
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.85 E-value=4.1e+02 Score=28.00 Aligned_cols=80 Identities=14% Similarity=0.034 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 321 LDAAIKLFQEMKERNF----RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR 396 (827)
Q Consensus 321 ~~~A~~~~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 396 (827)
.++|.+.|+.....+. ..+......++....+.|+.+.-..+++.... ..+..--..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 3445555555544311 22333444444444445554443333333332 2244444555555555555555555
Q ss_pred HHHHHHH
Q 003353 397 LWDEMRI 403 (827)
Q Consensus 397 l~~~m~~ 403 (827)
+++....
T Consensus 223 ~l~~~l~ 229 (324)
T PF11838_consen 223 LLDLLLS 229 (324)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 5555544
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=42.96 E-value=56 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=14.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 486 LLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 486 li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
+..+|...|+.+.|.+++++.+..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666643
No 377
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.92 E-value=2.4e+02 Score=24.64 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 268 p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
||...|-+|-. .+.|.-+++...+.++...
T Consensus 69 pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 69 PDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred ccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555544322 2445555555555544443
No 378
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.67 E-value=4.1e+02 Score=27.29 Aligned_cols=207 Identities=14% Similarity=0.101 Sum_probs=130.5
Q ss_pred CCccCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC
Q 003353 299 GECSLDGSTYELMIPS-LAKSGRLDAAIKLFQEMKERNFRPS---FNIFASLVDSMGKAGRLDTSMKVYMEMQGC---GH 371 (827)
Q Consensus 299 ~g~~pd~~t~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 371 (827)
.+-.||+..=|..-++ -.+....++|+.-|++..+..-.-. ......+|..+.+.|++++.+..|.++... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3456666554433222 1344578999999999887532222 234456788999999999999999998631 11
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 003353 372 --RPSAPMYVSLIESYAKAGKLDTALRLWDEMRI----A-GFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA----- 439 (827)
Q Consensus 372 --~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~-g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----- 439 (827)
.-+..+.|++++......+.+-..+.++.-.+ . +-..--.|-+-|...|...|.+.+..++++++.+.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 23455778888877777777766666654332 1 11112234456778888888999988888888753
Q ss_pred CCC------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHH
Q 003353 440 GFL------PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA-GLRPGLSTYTALLTLLA-----KRKLVDVAAKILLEM 506 (827)
Q Consensus 440 g~~------p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~~-----~~g~~~~A~~l~~~m 506 (827)
|-. --...|..-|.+|....+-.+-..+|++.+.- ..-|.+.... +|.-|. +.|.+++|..-|-++
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 211 01346777888888888888888888887652 2345554443 344442 456676665444433
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.30 E-value=5e+02 Score=28.53 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=22.5
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 003353 457 SSGQVDSAMKLYNSMTSAGLRPGLS--TYTALLTLLA--KRKLVDVAAKILLEMKT 508 (827)
Q Consensus 457 ~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~li~~~~--~~g~~~~A~~l~~~m~~ 508 (827)
..+++..|.++++++.+. +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555555543 333222 2223333332 24455555555555443
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=41.18 E-value=88 Score=25.53 Aligned_cols=13 Identities=8% Similarity=-0.115 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 003353 496 VDVAAKILLEMKT 508 (827)
Q Consensus 496 ~~~A~~l~~~m~~ 508 (827)
.++|+..+...++
T Consensus 22 ~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 22 TQQALQKWRKALE 34 (80)
T ss_pred HHHHHHHHHHHHh
Confidence 3334444444333
No 381
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.91 E-value=4.7e+02 Score=27.77 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCchHhHHH--HHHHHHHcCCHHHHHHHHHHHhhCCCCCC----HHHH
Q 003353 483 YTALLTLLAKRKLVDVAAKILLEMK----TMGYSVDVSASD--VLMVYIKDGSVDHALRWLRFMGSSGIRTN----NFIV 552 (827)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~~~~~~~~--li~~y~~~g~~~~A~~~~~~m~~~~~~p~----~~~~ 552 (827)
+.....-||+.|+-+.|.+.+.... ..|.+.|+.+.. +.-.|....-+.+-++..+.+.+.|...+ -.+|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 3334445566666666555554433 234445543322 22233333334444444444555554322 2233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 553 RQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 553 ~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
..+ -|..-.++.+|-.+|-+.+
T Consensus 187 ~Gl--y~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 187 QGL--YCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHH--HHHHHHhHHHHHHHHHHHc
Confidence 322 2334456777777776654
No 382
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.76 E-value=5.3e+02 Score=28.31 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC--KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
...+.-+.+.|..+|+++.|++.|.+.++..- +.-+..|-.+|..-.-.|+|......-.+..+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34677788889999999999999988654321 12344566666666667777776666666554
No 383
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=40.38 E-value=5.5e+02 Score=28.45 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 517 ASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 517 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
...|+.-|...|++.+|.++++++.-- .--...++.+++.+..+.|+-...+.+++....
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 345666677777777777777665311 111245666666666666666555555555433
No 384
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.36 E-value=45 Score=36.87 Aligned_cols=106 Identities=13% Similarity=0.031 Sum_probs=63.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
++...+.+.++.|..++.++++.. +.+...|..-..++.+.+++..|+.=+...++..+. ....|-.-..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld----pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD----PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC----CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhH
Confidence 344556677788888888877775 555556665667777777777777777766664422 222333333334444
Q ss_pred CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH
Q 003353 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~ 316 (827)
+.+.+|+..|+.... +.|+..-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 555566666665554 4566666665555543
No 385
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.12 E-value=3.9e+02 Score=26.62 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 003353 518 SDVLMVYIKDGSVDHALRWLRFMGSSG 544 (827)
Q Consensus 518 ~~li~~y~~~g~~~~A~~~~~~m~~~~ 544 (827)
+-+...+.+.|+.++|.+.|.++...+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334445566666666666666666544
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.74 E-value=65 Score=31.46 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=30.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003353 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDS 227 (827)
Q Consensus 176 ~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~ 227 (827)
+.+......+|+.+.-...|++..|..++.++...|+.++|.+...++....
T Consensus 123 ~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 123 DPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3333344444444433345666666666666666677777766666665543
No 387
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=39.45 E-value=7.1e+02 Score=29.42 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=14.8
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC
Q 003353 665 YLVLMGQINRARCVWKVAYENKLFPK 690 (827)
Q Consensus 665 ~l~k~G~~~~A~~v~~~~~~~~~~p~ 690 (827)
-+.+.|++++|.+.+++. ++.|.
T Consensus 514 ~~~~~g~~~~AL~~i~~L---~liP~ 536 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKL---DLIPL 536 (613)
T ss_dssp HHHHTT-HHHHHHHHHHT---T-S-S
T ss_pred HHHHcCCHHHHHHHHHhC---CCCCC
Confidence 456889999998887554 67774
No 388
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=38.96 E-value=96 Score=35.20 Aligned_cols=137 Identities=14% Similarity=0.040 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 003353 407 RPNFGLFTMIIESHAKS--GKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYT 484 (827)
Q Consensus 407 ~pd~~t~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 484 (827)
.|+..+.-+++.-.... ...+.|-.++..|.. ...|--+..|...--+...|+...|...+.........-..+...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 45666555544333221 123344455555543 222322222322222344688888888877766521111233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 544 (827)
.|.+...+.|..-.|-.++.+.+........++..+..+|.-..+++.|++.|+.+.+..
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 666667777788888888888877665445677888888888899999999998887654
No 389
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=38.77 E-value=2.7e+02 Score=28.80 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=34.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH-
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN- 282 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~- 282 (827)
|.+++..+++.+++...-+--+..- ..-..+...-|-.|.|.|....+.++-..-.+..-..+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pE---klPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPE---KLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcc---cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 4555555555554443333222110 112233333334444555544444444443332111222234444444333
Q ss_pred ----cCChhHHHHHH
Q 003353 283 ----KGLPYKAFEIY 293 (827)
Q Consensus 283 ----~g~~~~A~~~~ 293 (827)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 35555554444
No 390
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.39 E-value=8.7e+02 Score=29.86 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHD 226 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~ 226 (827)
-|..|+..|...|+.++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4677777777778888888887777653
No 391
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.25 E-value=58 Score=36.04 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=61.8
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHH
Q 003353 455 HASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL-LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHA 533 (827)
Q Consensus 455 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A 533 (827)
+...+.++.|..++.+.++ +.||...|-+. ..++.+.+++..|..=+..+++..+.-...|..-..++.+.+.+.+|
T Consensus 14 ~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3445667777777777776 55655443332 25666777777777777777765543334455555566666677777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 003353 534 LRWLRFMGSSGIRTNNFIVRQLFESCMK 561 (827)
Q Consensus 534 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 561 (827)
+..|+.... +.|+..-....+.-|-+
T Consensus 92 ~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 92 LLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 777766553 45665555555555443
No 392
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=37.20 E-value=99 Score=25.25 Aligned_cols=47 Identities=4% Similarity=-0.057 Sum_probs=31.1
Q ss_pred HcCCHhHHHHHHHHHHHCCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 003353 457 SSGQVDSAMKLYNSMTSAGLR-PGL-STYTALLTLLAKRKLVDVAAKIL 503 (827)
Q Consensus 457 ~~g~~~~A~~l~~~m~~~g~~-pd~-~t~~~li~~~~~~g~~~~A~~l~ 503 (827)
...+.++|+..+...++.-.. |+. .++..++.+++..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888777764322 222 36677777888888877766543
No 393
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.69 E-value=2.5e+02 Score=25.22 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 532 HALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLET 574 (827)
Q Consensus 532 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 574 (827)
++.++|+.|..+|+-.. ...|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666555444 33444444445566666666666654
No 394
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=36.52 E-value=5e+02 Score=26.77 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 338 PSFNIFASLVDSMGKAGRLDTSMKVY 363 (827)
Q Consensus 338 p~~~t~~~li~~~~~~g~~~~A~~~~ 363 (827)
.|+.....+...|.+.|++.+|+..|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34566666677777777777766555
No 395
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.29 E-value=5.6e+02 Score=27.32 Aligned_cols=60 Identities=10% Similarity=-0.105 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHH
Q 003353 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522 (827)
Q Consensus 462 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~ 522 (827)
+.-+.++++.++.. .-+...+..++..+.+..+.++..+.+++++...+.....|...++
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 44455555555541 1233344555555555556666666666666554443344444443
No 396
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.57 E-value=2.9e+02 Score=29.02 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 003353 477 RPGLSTYTALLTLLAKRKLVDVAA 500 (827)
Q Consensus 477 ~pd~~t~~~li~~~~~~g~~~~A~ 500 (827)
.-|+..|..+..||.-.|+.+.+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 356677777777777777655544
No 397
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.06 E-value=6.7e+02 Score=27.84 Aligned_cols=41 Identities=29% Similarity=0.289 Sum_probs=24.7
Q ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 380 SLIESYAK---AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420 (827)
Q Consensus 380 ~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 420 (827)
.+++++.+ .++.+.|+..+..|.+.|..|....-..++.++
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34444443 467788888888888777766544444444443
No 398
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.90 E-value=5.5e+02 Score=26.78 Aligned_cols=96 Identities=10% Similarity=0.096 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCchH---
Q 003353 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTS----AGLRPGLSTYT-ALLTLLAKRKLVDVAAKILLEMKTMGYSVDV--- 515 (827)
Q Consensus 444 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd~~t~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~--- 515 (827)
....+..+..-|++.++.+.+.+...+..+ .|.+.|..... .|.-.|....-+++.++..+.|++.|-.-+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 456677788888998888888887766554 46666654322 2333455566678888888888888876442
Q ss_pred --hHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 516 --SASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 516 --~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
+|..+. +....++.+|..++-...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 232222 223456677777666554
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.67 E-value=85 Score=24.22 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=7.7
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 003353 486 LLTLLAKRKLVDVAAKILLE 505 (827)
Q Consensus 486 li~~~~~~g~~~~A~~l~~~ 505 (827)
+|.++...|++++|.++.++
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33344444444444444333
No 400
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=34.49 E-value=5.3e+02 Score=26.54 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
.....+-.|.-.|+...|...++...+
T Consensus 143 fi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 143 FIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 334445556666777777666665553
No 401
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.45 E-value=1.3e+02 Score=21.76 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=18.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003353 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVL 591 (827)
Q Consensus 560 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 591 (827)
.+.|..+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666665555555544
No 402
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.12 E-value=4.1e+02 Score=25.94 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHHcCC--HhHHHH
Q 003353 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA--GFLPTPSTYSCLLE-MHASSGQ--VDSAMK 466 (827)
Q Consensus 392 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~-~~~~~g~--~~~A~~ 466 (827)
++++++-+++.. +...+-.....|++++|.+-++++.+. .++.-...|..+.. +++..+. +-+|..
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHH--------------hcCCHHHHHHHHHHHHH
Q 003353 467 LYNSMTSAGLRPGL---STYTALLTLLA--------------KRKLVDVAAKILLEMKT 508 (827)
Q Consensus 467 l~~~m~~~g~~pd~---~t~~~li~~~~--------------~~g~~~~A~~l~~~m~~ 508 (827)
++.-....++.--. +.+...|.+.+ +.|+++.|.+.++-|.+
T Consensus 91 l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 403
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.68 E-value=2.8e+02 Score=23.23 Aligned_cols=14 Identities=7% Similarity=0.059 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHHhH
Q 003353 249 DKLEMSYCCFKKVL 262 (827)
Q Consensus 249 g~~~~A~~~~~~m~ 262 (827)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444443
No 404
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.56 E-value=2.4e+02 Score=27.26 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=16.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003353 557 ESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~~ 577 (827)
..|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 457888888888888888765
No 405
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.47 E-value=40 Score=30.48 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=27.1
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCceehhhhh
Q 003353 665 YLVLMGQINRARCVWKVAYENKLFPKAIVFDQHI 698 (827)
Q Consensus 665 ~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~i 698 (827)
.+.+.|...+|..||++|+++|-.||. |+.++
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll 135 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALL 135 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHH
Confidence 677789999999999999999999986 55444
No 406
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=33.14 E-value=4.6e+02 Score=28.70 Aligned_cols=19 Identities=11% Similarity=-0.012 Sum_probs=9.1
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 003353 421 AKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~ 439 (827)
.+.+++..|.++|+++...
T Consensus 141 ~n~~dy~aA~~~~~~L~~r 159 (380)
T TIGR02710 141 INAFDYLFAHARLETLLRR 159 (380)
T ss_pred HHhcChHHHHHHHHHHHhc
Confidence 3444445555555554444
No 407
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=33.11 E-value=7.4e+02 Score=27.75 Aligned_cols=123 Identities=10% Similarity=-0.029 Sum_probs=71.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003353 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286 (827)
Q Consensus 207 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~ 286 (827)
-...|+.-.|.+-+...++.. +.++.........+...|.++.+.+.+....+. +.....+...+++...+.|++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~----~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ----QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC----CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 344566655544444444333 333333333344556778888887777655432 112445666777777777888
Q ss_pred hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 287 YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 287 ~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
++|..+-.-|....++ +...........-..|-++++...++++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888888777776655 33333333333445566777777777776554
No 408
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.07 E-value=28 Score=36.71 Aligned_cols=88 Identities=14% Similarity=0.038 Sum_probs=41.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A 289 (827)
.|.+++|++.|...+..+ ++....|..-.+++.+.++...|++=++...+.... ....|-.--.+....|+|++|
T Consensus 127 ~G~~~~ai~~~t~ai~ln----p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN----PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred CcchhhhhcccccccccC----CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 444555555555555544 445555555555555555555555555444443211 111222222223334555555
Q ss_pred HHHHHHhHhCCcc
Q 003353 290 FEIYESMEKGECS 302 (827)
Q Consensus 290 ~~~~~~m~~~g~~ 302 (827)
-..|....+.++.
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 5555555554443
No 409
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.58 E-value=4.8e+02 Score=25.46 Aligned_cols=24 Identities=0% Similarity=0.021 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 003353 585 VLYTSVLAHLVRCQDEQNERHLMA 608 (827)
Q Consensus 585 ~t~~~ll~a~~~~g~~~~a~~l~~ 608 (827)
...|.-...+.++|..|.|..+++
T Consensus 182 qivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 182 QIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhHHHHHHHHHHcCCchHHHHHHh
Confidence 344555555666666666666655
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.56 E-value=6.5e+02 Score=27.63 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=31.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCChhHHHHHHHHHHH
Q 003353 385 YAKAGKLDTALRLWDEMRIAGFRPNFG--LFTMIIESHAK--SGKLDIAMSIFTDMER 438 (827)
Q Consensus 385 ~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~li~~~~~--~g~~~~A~~~~~~m~~ 438 (827)
+.+.+++..|.++|+++... +.++.. .+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34667777777777777765 443333 34444455543 4456677777776655
No 411
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.48 E-value=3.5e+02 Score=24.28 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 215 GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKK 260 (827)
Q Consensus 215 ~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (827)
++.++|..|...++ +......|..-...+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~I--G~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGI--GTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTT--STTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66677777766654 344555666666666666777777666654
No 412
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.91 E-value=7.5e+02 Score=27.49 Aligned_cols=25 Identities=8% Similarity=-0.011 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 414 TMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 414 ~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
|-++.-|...|+..+|.+..+++..
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC
Confidence 4456667777777777766666543
No 413
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=31.88 E-value=4.2e+02 Score=24.56 Aligned_cols=50 Identities=14% Similarity=0.267 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHcCC-HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003353 444 TPSTYSCLLEMHASSGQ-VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR 493 (827)
Q Consensus 444 ~~~t~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 493 (827)
+..+|.+++.+.++..- ---+..+|+-|.+.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44566777777655544 344566777777766777777777777776554
No 414
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.83 E-value=3.5e+02 Score=28.40 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424 (827)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 424 (827)
.++..+.+.+++.+..+.+..+. ....-...+..+...|++..|++++.+..+.- . +..-|+.+=+. ..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---hH
Confidence 34455555555555555555554 33344455666677788888887777765420 0 00001111000 11
Q ss_pred ChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 003353 425 KLDIAMSIFTDMERAG-----FLPTPSTYSCLLEMHASSGQVDSAMKL 467 (827)
Q Consensus 425 ~~~~A~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~l 467 (827)
++++-....+++.+.. ..-|+..|..++.+|.-.|+...+.+-
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2222222222222110 124788899999999988877665533
No 415
>PRK10941 hypothetical protein; Provisional
Probab=31.81 E-value=4.8e+02 Score=27.05 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
.+-.+|.+.++++.|..+.+.++...+....-+..-...|.+.|.+..|..-++...+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444556666666666666666665444333445555556666666666666655543
No 416
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.75 E-value=1.6e+02 Score=21.39 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=10.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003353 318 SGRLDAAIKLFQEMKERNFRPSFNIF 343 (827)
Q Consensus 318 ~g~~~~A~~~~~~m~~~g~~p~~~t~ 343 (827)
.|-++++..++++|.+.|+..+...+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHH
Confidence 33344444444444444433333333
No 417
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=31.45 E-value=2.5e+02 Score=32.84 Aligned_cols=164 Identities=13% Similarity=0.066 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHA 456 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 456 (827)
.|..-+..+...++.. ....+++..+-...+.....-++..|.+.|..+.|.++.+.+-.+-+ ...-|..-+.-+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 3544444444333222 44445544443334555566677777777777777777776654322 2234566666677
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHH
Q 003353 457 SSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRW 536 (827)
Q Consensus 457 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~ 536 (827)
+.|+....-.+-+.+.+.....+......+++...... +....+.+-..|...-.. .+.|+..+|.+.
T Consensus 450 ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~-----------~~~~~L~fla~yreF~~~-~~~~~~~~Aa~~ 517 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPM-----------LLSQRLSFLAKYREFYEL-YDEGDFREAASL 517 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchh-----------hhhhhhHHHHHHHHHHHH-HhhhhHHHHHHH
Confidence 77777776666666654322222222222332222111 111112222222222222 233667777777
Q ss_pred HHHHhhCCCCCCHHHHHHHH
Q 003353 537 LRFMGSSGIRTNNFIVRQLF 556 (827)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~ll 556 (827)
+-.+.+.++.|...-..-|.
T Consensus 518 Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 518 LVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp --------------------
T ss_pred HHHHHCCCCCcHHHHHHHHH
Confidence 66666666666655444443
No 418
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=30.47 E-value=3.4e+02 Score=31.08 Aligned_cols=72 Identities=15% Similarity=0.025 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIE 383 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 383 (827)
.|.+...+.|....|-.++.+..... ...+-++..+.++|....+++.|++.|++..+.. +.+.+.-+.|..
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 33444444444445555554444433 2233445555555555555555555555555443 223344444433
No 419
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.38 E-value=3.3e+02 Score=22.82 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
|.|....-.+...+...|++++|.+.+-.+.+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444455555555555555555444444
No 420
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=30.35 E-value=41 Score=30.41 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=19.4
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
+.|.-.+|..+|++|.+.|-.|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34555666777777777776665 46666654
No 421
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=30.16 E-value=1.1e+02 Score=23.66 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=9.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 003353 381 LIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 381 li~~~~~~g~~~~A~~l~~~m~ 402 (827)
+|.+|...|++++|.++++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444444444443
No 422
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.12 E-value=8.4e+02 Score=27.51 Aligned_cols=273 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-------------HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003353 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLD-------------TSMKVYMEMQGCGHRPSAPMYVSLIES 384 (827)
Q Consensus 318 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~-------------~A~~~~~~m~~~g~~p~~~~~~~li~~ 384 (827)
.+.++...++++.+..+|.....+.+|.-...|.+.|... .+...-+.|-.....-..+.+-...-.
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi 109 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVI 109 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhee
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--------HhcCChhHHHHHHHHHHHcC----------------
Q 003353 385 YAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH--------AKSGKLDIAMSIFTDMERAG---------------- 440 (827)
Q Consensus 385 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~--------~~~g~~~~A~~~~~~m~~~g---------------- 440 (827)
|.....+.+|+++...+... +.|=...+...+... ..+.+...-+.++.+|...+
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~k 188 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLK 188 (696)
T ss_pred eeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcc
Q ss_pred -------------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHH
Q 003353 441 -------------FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT-LLAKRKLVDVAAKILLEM 506 (827)
Q Consensus 441 -------------~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~-~~~~~g~~~~A~~l~~~m 506 (827)
-.+....----+.+|.+..+..-+..-.+.... +.-|...+..|=. -+.-.|++.+|.+++...
T Consensus 189 t~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn--~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s 266 (696)
T KOG2471|consen 189 TLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMN--IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS 266 (696)
T ss_pred cCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh--hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc
Q ss_pred ---HHCCCCch------HhHHHHHHHHHHcCCHHHHHHHHHHHhh-------CCCCCC-----------HHHHHHHHHHH
Q 003353 507 ---KTMGYSVD------VSASDVLMVYIKDGSVDHALRWLRFMGS-------SGIRTN-----------NFIVRQLFESC 559 (827)
Q Consensus 507 ---~~~g~~~~------~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~~~~p~-----------~~~~~~ll~~~ 559 (827)
.+.|.... +.|+.|.-.+.+.|.+.-+..+|.+..+ .|++|. ..+||.-+ .|
T Consensus 267 ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~~ 345 (696)
T KOG2471|consen 267 NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-LY 345 (696)
T ss_pred ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH-HH
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003353 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLV 595 (827)
Q Consensus 560 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 595 (827)
...|++-.|.+.|.+.+.. +..+...|--|..+|.
T Consensus 346 Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 346 LHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
No 423
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.65 E-value=1e+03 Score=28.37 Aligned_cols=42 Identities=5% Similarity=-0.065 Sum_probs=25.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 003353 166 HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVL 207 (827)
Q Consensus 166 ~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l 207 (827)
.+..++..++++++|+.+--.+...-...++...+.+++.-|
T Consensus 64 ~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~ 105 (929)
T KOG2062|consen 64 LASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKC 105 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHH
Confidence 357788899999988877655543322344445555544333
No 424
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.59 E-value=1.1e+02 Score=31.85 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKERNF 336 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~g~ 336 (827)
+..|....+.||+++|+++++++++.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3555555555555555555555555554
No 425
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.50 E-value=3e+02 Score=23.04 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=14.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 318 SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 318 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
.|+.+.|.+++..+. +|- ..|...++++-..|.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~ 81 (88)
T cd08819 49 HGNESGARELLKRIV-QKE----GWFSKFLQALRETEH 81 (88)
T ss_pred cCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCc
Confidence 344444444444444 331 334444444444444
No 426
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=29.46 E-value=3.9e+02 Score=23.39 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=22.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 003353 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATK 614 (827)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~ 614 (827)
..+.+.|+|++|+. . -.....||...|-+|- -.+.|-.+++...+.++...+
T Consensus 48 ~sLmNrG~Yq~ALl---~-~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 48 SSLMNRGDYQEALL---L-PQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHTT-HHHHHH---H-HTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHhhHHHHHHHH---h-cccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 34555666666611 1 1122445666665543 235555555555555554443
No 427
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=29.43 E-value=3e+02 Score=24.84 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=35.5
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 533 ALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
..+-+..+..-++.|+..++..-+.+|.+-+++..|..+|+-.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555566667889988888888999999999999999887764
No 428
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.30 E-value=2.8e+02 Score=24.22 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666554
No 429
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.25 E-value=2.1e+02 Score=24.00 Aligned_cols=22 Identities=5% Similarity=0.144 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhH
Q 003353 241 VIQYLAKADKLEMSYCCFKKVL 262 (827)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~ 262 (827)
+.......|..++|...+++..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444455555555555555544
No 430
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.73 E-value=2.7e+02 Score=25.78 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=41.5
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003353 536 WLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598 (827)
Q Consensus 536 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 598 (827)
+.+.+.+.|++++..-. .++..+...++.-.|.++++++.+.++..+..|.-..|+.+...|
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33445566776665544 344667777777889999999998888877666666666655444
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.35 E-value=2.7e+02 Score=23.35 Aligned_cols=19 Identities=21% Similarity=0.062 Sum_probs=8.8
Q ss_pred HHHHcCCHHHHHHHHHHHh
Q 003353 523 VYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 523 ~y~~~g~~~~A~~~~~~m~ 541 (827)
.....|+.++|...+++.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3344455555554444443
No 432
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=27.88 E-value=4.9e+02 Score=24.11 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 375 APMYVSLIESYAKAGK-LDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422 (827)
Q Consensus 375 ~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 422 (827)
..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..+|.++.+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 3345555555544333 23345555555555555555555555555443
No 433
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=27.40 E-value=7.5e+02 Score=26.05 Aligned_cols=69 Identities=12% Similarity=0.220 Sum_probs=36.7
Q ss_pred cCChhHHHHHHH-HHHHcCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003353 423 SGKLDIAMSIFT-DMERAGFLPTP----STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVD 497 (827)
Q Consensus 423 ~g~~~~A~~~~~-~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 497 (827)
...+++.....+ +|.+.++ |+. +.|..++++---+.+-+ .+-++.++ ...+|.-|+.++|..|+.+
T Consensus 268 e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkee---lva~qalr-----hlK~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEE---LVAEQALR-----HLKQYAPLLAAFCSQGQSE 338 (412)
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHH---HHHHHHHH-----HHHhhhHHHHHHhcCChHH
Confidence 334444444333 4555544 343 35777777655442211 11122222 2347888889999888877
Q ss_pred HHH
Q 003353 498 VAA 500 (827)
Q Consensus 498 ~A~ 500 (827)
..+
T Consensus 339 L~L 341 (412)
T KOG2297|consen 339 LEL 341 (412)
T ss_pred HHH
Confidence 543
No 434
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.17 E-value=2.1e+02 Score=21.32 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=12.4
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCCHH
Q 003353 454 MHASSGQVDSAMKLYNSMTSAGLRPGLS 481 (827)
Q Consensus 454 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 481 (827)
++.+.|++++|.+..+.+++ +.|+..
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 44555555555555555555 344443
No 435
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.93 E-value=7.2e+02 Score=25.69 Aligned_cols=17 Identities=12% Similarity=-0.031 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHHCCC
Q 003353 495 LVDVAAKILLEMKTMGY 511 (827)
Q Consensus 495 ~~~~A~~l~~~m~~~g~ 511 (827)
+.++|...|....+.|.
T Consensus 206 d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 45555555555555544
No 436
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=26.60 E-value=1.3e+02 Score=18.62 Aligned_cols=13 Identities=0% Similarity=0.319 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHH
Q 003353 213 FDGMLSLFDEMVH 225 (827)
Q Consensus 213 ~~~A~~l~~~m~~ 225 (827)
.+.|..+|++++.
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.34 E-value=5.9e+02 Score=25.54 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=10.0
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q 003353 242 IQYLAKADKLEMSYCCFKKV 261 (827)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m 261 (827)
|....+.|++++|.+....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33345555555555555444
No 438
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=26.19 E-value=3.9e+02 Score=22.35 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=42.4
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 183 LFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251 (827)
Q Consensus 183 ~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (827)
-++.....+ +.|...-..+...+...|++++|++.+-++++... ...+...-..++..+.-.|.-
T Consensus 10 al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr--~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 10 ALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVRRDR--DYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T--TCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--cccccHHHHHHHHHHHHcCCC
Confidence 334444433 45777888889999999999999999999988753 133455666666666666553
No 439
>PRK11619 lytic murein transglycosylase; Provisional
Probab=26.11 E-value=1.2e+03 Score=27.83 Aligned_cols=433 Identities=7% Similarity=-0.009 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHcCCCCccHHHHhhhCCCCC-CHHH-HHHHHHccCC--hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 003353 133 SAVAKIVEVVNRWKWGPELETQLDKLQFVP-KMVH-ITQALKVIND--SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208 (827)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p-~~~~-~~~~l~~~~~--~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~ 208 (827)
..+..+...++..++.. .......+.-.| .+.. ...+...+++ .++...+ +.+.++.+.....-..-+..++
T Consensus 35 ~~f~~A~~a~~~g~~~~-~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~F---l~~~~~~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 35 QRYQQIKQAWDNRQMDV-VEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNF---IRANPTLPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHHHHHHHHCCCHHH-HHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHH---HHHCCCCchHHHHHHHHHHHHH
Confidence 34556666666666443 233333333222 2222 2333334443 3333333 3344333333333334556677
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~ 288 (827)
+.+++++..+.+. .. +.+.........+....|+-++|....+.+-..|.. .....+.++..+.+.|....
T Consensus 111 ~~~~w~~~~~~~~----~~----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 111 RREDWRGLLAFSP----EK----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HccCHHHHHHhcC----CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCH
Confidence 7778777666221 11 566777777888888899988887777777655533 45677788888877665543
Q ss_pred H--HHHHHHhHhCCccCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--h
Q 003353 289 A--FEIYESMEKGECSLDGSTYELMIPSLAK------------SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG--K 352 (827)
Q Consensus 289 A--~~~~~~m~~~g~~pd~~t~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~--~ 352 (827)
. .+=++.....| +...-..+...+.. ..+...+...+. .+.++...-..++.++. .
T Consensus 182 ~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 182 LAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVA 253 (644)
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHH
Confidence 2 22222333322 22222222221100 011111111111 11223221221222222 3
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003353 353 AGRLDTSMKVYMEMQGCG-HRPS--APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 429 (827)
..+.+.|..++....... ..+. ...+..+.......+..++|...++...... .|......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 456688888888875432 2222 1234444433444433556666666544332 2344445555555688899988
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 003353 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDV-AAKILLEMKT 508 (827)
Q Consensus 430 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~-A~~l~~~m~~ 508 (827)
...+..|.... .-...-.--+..++...|+.++|...|+++.. ..+ -|..|.. .+.|..-. ....... ..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg~~~~~~~~~~~~-~~ 402 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAA--QRLGEEYPLKIDKAPK-PD 402 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHH--HHcCCCCCCCCCCCCc-hh
Confidence 88888876532 12334445567777778999999999999854 122 2322221 22221100 0000000 00
Q ss_pred CCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC
Q 003353 509 MGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVES-----AAKVD 583 (827)
Q Consensus 509 ~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~~pd 583 (827)
..+. ......-+..+...|...+|...+..+.+. .+......+.....+.|.++.++......... ...
T Consensus 403 ~~~~-~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp-- 476 (644)
T PRK11619 403 SALT-QGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFP-- 476 (644)
T ss_pred hhhc-cChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCC--
Confidence 0000 011223455677889999999999888864 24444445555556788888887766543221 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 003353 584 LVLYTSVLAHLVRCQDEQNER 604 (827)
Q Consensus 584 ~~t~~~ll~a~~~~g~~~~a~ 604 (827)
..|...+..+.+.-..+.+.
T Consensus 477 -~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 477 -LAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred -cchHHHHHHHHHHcCCCHHH
Confidence 13666676666655555544
No 440
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=26.06 E-value=8.8e+02 Score=26.38 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=29.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCchH-hHHHHHHHHH-HcCCHHHHHHHHHHHh
Q 003353 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDV-SASDVLMVYI-KDGSVDHALRWLRFMG 541 (827)
Q Consensus 487 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~y~-~~g~~~~A~~~~~~m~ 541 (827)
|..+.+.|-+.-|.++.+-+...++..|. ....+|+.|+ ++++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 34555666666666666666665555333 3444455443 4555555555555443
No 441
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.96 E-value=41 Score=35.54 Aligned_cols=95 Identities=13% Similarity=-0.030 Sum_probs=64.1
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
..|.++.|++.|..+...+ ++....|.--.+++.+.++...|++=++..+..+ +.+..-|-.-..+-.-.|.++
T Consensus 126 n~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein----~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN----PDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred cCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccC----cccccccchhhHHHHHhhchH
Confidence 4466777777777777765 5666777777777778788877777777777665 444555555555555667777
Q ss_pred HHHHHHHHhHhCCCCCCHHHH
Q 003353 253 MSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+|...|....+.+..+....|
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHHHhccccHHHHHH
Confidence 777777777666655444433
No 442
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.84 E-value=1.4e+03 Score=28.82 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVY 363 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~ 363 (827)
..|+.|-..+...+++.+|-.+.
T Consensus 1103 nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1103 NYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred cHHHHHHHHHHhhcchhHHHHHH
Confidence 34555555556666766665443
No 443
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.32 E-value=3.9e+02 Score=31.07 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 380 SLIESYAKAGKLDTALRLWDEMRIA--GFRPNFGLFTMIIESHAKSGKLD------IAMSIFTDMERAGFLPTPSTYSCL 451 (827)
Q Consensus 380 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 451 (827)
++..+|..+|++-.+.++++..... |-+.=...||..|....+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6788888889988888888887753 22223456777778888888754 2333333333 34477778777
Q ss_pred HHHHHH
Q 003353 452 LEMHAS 457 (827)
Q Consensus 452 i~~~~~ 457 (827)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 765443
No 444
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=25.09 E-value=8e+02 Score=25.58 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=45.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHHHHH-HHHHHHcCCHhHHHHHHHHHHHC----CCCCCHHHHHH
Q 003353 415 MIIESHAKSGKLDIAMSIFTDME----RAGFLPTPSTYSCL-LEMHASSGQVDSAMKLYNSMTSA----GLRPGLSTYTA 485 (827)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~~~l-i~~~~~~g~~~~A~~l~~~m~~~----g~~pd~~t~~~ 485 (827)
-+|..+.+.|.+.+|..+.+.+. +.+-+++..+...+ -..|....++.++..-+...... -.+|-...-.-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 45677777888887777665443 33334443332222 13344444444444444333321 12233333333
Q ss_pred HHHHH--HhcCCHHHHHHHHHHHHH
Q 003353 486 LLTLL--AKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 486 li~~~--~~~g~~~~A~~l~~~m~~ 508 (827)
++++. |...++.-|..+|-+..+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 34332 344556666666666554
No 445
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=25.08 E-value=8.1e+02 Score=29.64 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=10.4
Q ss_pred HcCCHhHHHHHHHHHHH
Q 003353 457 SSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 457 ~~g~~~~A~~l~~~m~~ 473 (827)
..|++++|+.+++.+.-
T Consensus 719 ~~~~~e~aL~~le~l~L 735 (835)
T KOG2168|consen 719 HNGEWEEALSILEHLDL 735 (835)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 45666666666666654
No 446
>PRK13342 recombination factor protein RarA; Reviewed
Probab=24.92 E-value=9.7e+02 Score=26.53 Aligned_cols=29 Identities=21% Similarity=0.043 Sum_probs=16.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCchHhHHHHH
Q 003353 493 RKLVDVAAKILLEMKTMGYSVDVSASDVL 521 (827)
Q Consensus 493 ~g~~~~A~~l~~~m~~~g~~~~~~~~~li 521 (827)
.++.+.|...+..|++.|..|......|+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~ 271 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLV 271 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35566666666666666655554444433
No 447
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=24.43 E-value=4.1e+02 Score=23.97 Aligned_cols=44 Identities=7% Similarity=0.173 Sum_probs=25.9
Q ss_pred HHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 291 EIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 291 ~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
+.++.+....+.|+.......+++|.+.+++..|.++|+-.+.+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444444455666666666666666666666666666665543
No 448
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=24.18 E-value=2.6e+02 Score=20.86 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=14.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDS 227 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~ 227 (827)
.+.-++.+.|++++|.+..+.+++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 34445566666666666666666654
No 449
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.81 E-value=8.6e+02 Score=25.51 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 519 DVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 519 ~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
.++.+.+...+.+...++++....
T Consensus 206 ~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 206 RLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHhhhccCCHHHHHHHHHHHcC
Confidence 344444444444444445554444
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=23.69 E-value=1.4e+02 Score=31.21 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=23.5
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003353 338 PSFNI-FASLVDSMGKAGRLDTSMKVYMEMQGCGHR 372 (827)
Q Consensus 338 p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 372 (827)
||..+ |+..|....+.||+++|+++++|..+.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44333 456777777777777777777777777654
No 451
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.67 E-value=9.6e+02 Score=25.99 Aligned_cols=250 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCH----HHH
Q 003353 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDG----STY 308 (827)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~ 308 (827)
+++.+.-.++.-|....+.+....+-..+.. +.+.+-.++.+.+.+...+++..+.... ..|.. ...
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f~~--------lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H 143 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIFFP--------LCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIH 143 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHHHH--------HHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhH
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKERN------FRPSFNIFASLVDSMGKAG--RLDTSMKVYMEMQGCGHRPSAPMYVS 380 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ 380 (827)
..++..|.+++++.-+...++.-...- ++|........=.+|.-.| +++.|+.+|+.... .|....-..
T Consensus 144 ~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs~~ 220 (422)
T KOG2582|consen 144 ADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVSHI 220 (422)
T ss_pred HHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHHHH
Q ss_pred HHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003353 381 LIESYAK--------AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLL 452 (827)
Q Consensus 381 li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 452 (827)
.+.+|-+ .|+.-..-+.=.+....-.+|=...|.-+.++|.+...-+ .+.+..+-.++
T Consensus 221 hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~e-Lr~lVk~~~~r------------- 286 (422)
T KOG2582|consen 221 HLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTE-LRTLVKKHSER------------- 286 (422)
T ss_pred HHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHH-HHHHHHHHHHH-------------
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHCC
Q 003353 453 EMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL----LTLLAKRKLVDVAAKILLEMKTMG 510 (827)
Q Consensus 453 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l----i~~~~~~g~~~~A~~l~~~m~~~g 510 (827)
+.+-++..-|......+.++.+.--..||.++ |.-..+.+..+++.+..-+|.+.|
T Consensus 287 --F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 --FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred --HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
No 452
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=23.51 E-value=3.2e+02 Score=26.45 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 476 LRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 476 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
..|+..+|..++.++...|+.++|.+...++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566666666666666666666666666666553
No 453
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.30 E-value=1.9e+02 Score=22.65 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003353 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387 (827)
Q Consensus 336 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 387 (827)
+.|....++.++..+++..-+++++..+.++...| .-+..+|---++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
No 454
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.71 E-value=5.7e+02 Score=23.03 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 003353 532 HALRWLRFMGSSGIRTNNF-IVRQLFESCMKNALYESAKPLLE 573 (827)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~ 573 (827)
++.++|..|..+|+-.... -|.....-+...|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3555666666666654433 34344444556666666666664
No 455
>PHA03100 ankyrin repeat protein; Provisional
Probab=22.10 E-value=5.2e+02 Score=29.12 Aligned_cols=233 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHhHhCCccCCHHHHHH--HHHH-----HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 290 FEIYESMEKGECSLDGSTYEL--MIPS-----LAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362 (827)
Q Consensus 290 ~~~~~~m~~~g~~pd~~t~~~--li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 362 (827)
.++++.+.+.|..|+...... .+.. .+..|+.+-+.-+++.-...+ ..+....+.|..+.. ....-.++
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~---~~~~~~~i 123 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN-APDNNGITPLLYAIS---KKSNSYSI 123 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCC-CCCCCCCchhhHHHh---cccChHHH
Q ss_pred HHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 363 YMEMQGCGHRPSAPMYV--SLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLF--TMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 363 ~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
++.+.+.|..++..... +.+...++.|. .-.++.+.+.+.|..++.... .+.+...+..| -.++.+.+.+
T Consensus 124 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~ 197 (480)
T PHA03100 124 VEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLD 197 (480)
T ss_pred HHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHH
Q ss_pred cCCCCCHHHH--------HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 439 AGFLPTPSTY--------SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLS--TYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 439 ~g~~p~~~t~--------~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
.|..++.... .+.+...+..|+ ...++.+.+.+.|..++.. .-.+-+...+..|+ .++.+.+++
T Consensus 198 ~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~----~~iv~~Ll~ 271 (480)
T PHA03100 198 NGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN----PEFVKYLLD 271 (480)
T ss_pred cCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHH
Q ss_pred CCCCchH---hHHHHHHHHHHcCCHHHHHHHHH
Q 003353 509 MGYSVDV---SASDVLMVYIKDGSVDHALRWLR 538 (827)
Q Consensus 509 ~g~~~~~---~~~~li~~y~~~g~~~~A~~~~~ 538 (827)
.|..++. .-.+-+...++.|+.+-+..+++
T Consensus 272 ~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 272 LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 456
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.98 E-value=2.2e+03 Score=29.65 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 375 APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
..+|-...+...++|+++.|...+-...+.+ .| ..+--...-.-..|+...|+.++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4578888888888999999988777766655 23 33444566677789999999999988754
No 457
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.88 E-value=7.2e+02 Score=28.48 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 003353 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262 (827)
Q Consensus 201 ~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (827)
.-++.-|.+.+++++|..++..|-=... +.......+.+++.+.+..--.+.+..++.+.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~--g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTM--GEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCcccc--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3466678888888888888877742211 12233344555555555544444444444443
No 458
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=21.67 E-value=1.5e+03 Score=27.44 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=24.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424 (827)
Q Consensus 387 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 424 (827)
+.++.+.|+..+.+|.+.|..|....-..++.+...-|
T Consensus 270 rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 45778888888888888777765554444444443333
No 459
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=21.41 E-value=8.4e+02 Score=26.14 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH-----CCCCchH--hH
Q 003353 450 CLLEMHASSGQVDSAMKLYNSMTS---AGLRPGLSTYTALLTLLAK--RKLVDVAAKILLEMKT-----MGYSVDV--SA 517 (827)
Q Consensus 450 ~li~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~t~~~li~~~~~--~g~~~~A~~l~~~m~~-----~g~~~~~--~~ 517 (827)
.++...-+.++.++|+++++++.+ .--.|+.+.|.....+-++ .|+..++.+.+++..+ .++.+.+ .|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Q ss_pred HHHHHHHHHc
Q 003353 518 SDVLMVYIKD 527 (827)
Q Consensus 518 ~~li~~y~~~ 527 (827)
+.+-.-|.+.
T Consensus 160 Y~lssqYyk~ 169 (380)
T KOG2908|consen 160 YSLSSQYYKK 169 (380)
T ss_pred HHHHHHHHHH
No 460
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=20.89 E-value=5e+02 Score=30.30 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=59.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHhHhCCCCCCHHHHHH
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE------MSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
++..+|..+|++-.+.++++.....+- ....-...+|..+..+.+.|.++ .|.+.+++.. +.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~-~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNK-GDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCc-CCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 888999999999999999998876542 12344567888888888888754 3444444444 3457778877
Q ss_pred HHHHHHHcCChhHHHHHHHHhH
Q 003353 276 LMTLFLNKGLPYKAFEIYESME 297 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~ 297 (827)
|+.+...--+-.-..-++.+.+
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHH
Confidence 7766544322233334444443
No 461
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=20.86 E-value=1.1e+03 Score=25.58 Aligned_cols=279 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCC----HHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCC
Q 003353 307 TYELMIPSLAKSGR----LDAAIKLFQEMKE---RNFRPSFNIFASLVDSMGKA-------GRLDTSMKVYMEMQGCGHR 372 (827)
Q Consensus 307 t~~~li~~~~~~g~----~~~A~~~~~~m~~---~g~~p~~~t~~~li~~~~~~-------g~~~~A~~~~~~m~~~g~~ 372 (827)
+|..+|.+..+.+. .+.+.++.+.+.. ..-++....+-+.+....+. ..-+-...+..-..+.|-+
T Consensus 3 ~w~~~i~s~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~p~LA~lel~~~~~~~~~~~~~~~~~~~l~~Y~~~f~~K 82 (365)
T PF09797_consen 3 VWKLLIDSAFELGKSEEELEDVQEFLESLQAESSQSNPKSRGPYLARLELAKRLRERGDAPDEEDLLELLEEYFDKFGSK 82 (365)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHhCCC
Q ss_pred C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 003353 373 P----SAPMYVSLIESYAKAGKLDTALRLWDEMRIAG---FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP 445 (827)
Q Consensus 373 p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 445 (827)
| |...|...+ +.++..++++.+.... ...+.......+.++-- .++...-.........
T Consensus 83 ~cCf~DL~~Y~~~L-------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~in~~kl-------~r~~~~~~~~~~~~~~ 148 (365)
T PF09797_consen 83 PCCFDDLKPYLESL-------DPEERKELLEKLLEKIEADSKEDIKQLIRHINALKL-------SRFLGLHFSLSSESLL 148 (365)
T ss_pred CEeHHHHHHHHHhC-------CHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH-------HHHhcccccCChhhHH
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHCCCCchHhHH
Q 003353 446 STYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK-------RKLVDVAAKILLEMKTMGYSVDVSAS 518 (827)
Q Consensus 446 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~-------~g~~~~A~~l~~~m~~~g~~~~~~~~ 518 (827)
.....++..|...-...+... ....|...-....+..+.. .+.+-+|.-+++......+.....--
T Consensus 149 ~~~~~~~~~y~~~l~~~~~l~-------te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~L 221 (365)
T PF09797_consen 149 DLAQELLKLYQESLSLGKDLK-------TESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKL 221 (365)
T ss_pred HHHHHHHHHHHhhCccccccc-------cccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHH
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003353 519 DVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAK-PLLETYVESAAKVDLVLYTSVLAHLVRC 597 (827)
Q Consensus 519 ~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~-~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 597 (827)
-++..|...|-.+.|.+.|..+.-+.++-|...+ .++.-+...|....+. ..++...+--..-...+-..+..+| +.
T Consensus 222 lLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h-~~~~r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af-~~ 299 (365)
T PF09797_consen 222 LLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH-LILDRLSTLGPFKSAPENLLENALKFYDNSEKETPEFIIKAF-EN 299 (365)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH-HHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH-hC
Q ss_pred CCHHHHHHHHH
Q 003353 598 QDEQNERHLMA 608 (827)
Q Consensus 598 g~~~~a~~l~~ 608 (827)
|.+.+...+.+
T Consensus 300 gsysKi~ef~~ 310 (365)
T PF09797_consen 300 GSYSKIEEFIE 310 (365)
T ss_pred CCchhHHHHHH
No 462
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=20.73 E-value=1.1e+03 Score=25.41 Aligned_cols=119 Identities=10% Similarity=0.056 Sum_probs=78.7
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHH
Q 003353 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK------RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534 (827)
Q Consensus 461 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~------~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~ 534 (827)
+++++.++++....+. |..+.....|.++-. .-++.....+|+-+....+.|-++.|.-+ +..+..-.+.++
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAV-Ala~~~Gp~agL 349 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAV-ALAMREGPAAGL 349 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHH-HHHHhhhHHhHH
Confidence 4778888888877654 788887777776642 34677778888888887777777666443 333444466677
Q ss_pred HHHHHHhhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003353 535 RWLRFMGSSGIRTNNFIVRQL-FESCMKNALYESAKPLLETYVESAAK 581 (827)
Q Consensus 535 ~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~g~~ 581 (827)
.+.+-+.+.+---....|..+ ..-+.+.|+.++|...|++....-..
T Consensus 350 a~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 350 AMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 777776655322233333333 33467889999999999988765333
No 463
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.73 E-value=1.4e+03 Score=26.92 Aligned_cols=106 Identities=16% Similarity=0.159 Sum_probs=54.0
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 003353 392 DTALRLWDE-MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNS 470 (827)
Q Consensus 392 ~~A~~l~~~-m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~ 470 (827)
++..+.+.+ +.+.|+..+......++.. ..|++..|..++++....| .+.+ -....++
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~-----------------~~~I--t~~~V~~ 244 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFG-----------------SGQL--QEAAVRQ 244 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhc-----------------CCCc--CHHHHHH
Confidence 333444433 3345666666555555542 3466777766665443321 0111 0112222
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHH
Q 003353 471 MTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522 (827)
Q Consensus 471 m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~ 522 (827)
|.. .++......++.++.. |+...+.++++++.+.|..+......|+.
T Consensus 245 ~Lg---~~~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~~il~~l~~ 292 (618)
T PRK14951 245 MLG---SVDRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAASTLEEMAA 292 (618)
T ss_pred HHc---CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 221 1344444455555544 67788888888888887777654444433
No 464
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.62 E-value=3.7e+02 Score=24.83 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=30.2
Q ss_pred HHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 003353 502 ILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNF 550 (827)
Q Consensus 502 l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~ 550 (827)
+...+.+.|++....-..++..+.+.+..-.|.++++++.+.+...+..
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 3444555666666555566666666666677777777777665555443
No 465
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.37 E-value=8e+02 Score=23.85 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=9.5
Q ss_pred HHHHcCChhHHHHHHHHhHh
Q 003353 279 LFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~ 298 (827)
.|.++|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34444555555555544443
No 466
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=20.30 E-value=9.5e+02 Score=27.57 Aligned_cols=21 Identities=14% Similarity=0.399 Sum_probs=11.6
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 003353 416 IIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m 436 (827)
++.-|.+.+++++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 445555555555555555544
No 467
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=20.14 E-value=6.4e+02 Score=22.63 Aligned_cols=61 Identities=16% Similarity=-0.010 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCch--HhHH----HHHHHHHHcCCHHHHHHHHHH
Q 003353 479 GLSTYTALLTLLAKRKLVDVAAKILLEMKT----MG-YSVD--VSAS----DVLMVYIKDGSVDHALRWLRF 539 (827)
Q Consensus 479 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~~~--~~~~----~li~~y~~~g~~~~A~~~~~~ 539 (827)
|...+..|-.++...|++++++.--+..+. .| +..| ..|- +-..++...|+.++|++.|+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 345566677788888888877665544432 11 2222 1222 222344555666666666654
Done!