Query 003353
Match_columns 827
No_of_seqs 868 out of 4312
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 22:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-35 6.6E-40 346.1 47.4 462 172-687 95-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.6E-35 9E-40 345.0 46.6 465 142-617 95-583 (597)
3 4g26_A Pentatricopeptide repea 100.0 7.4E-29 2.5E-33 280.7 26.2 204 289-492 9-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 6.9E-29 2.3E-33 281.0 25.6 204 254-457 9-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-25 3.9E-30 248.3 50.8 381 204-598 6-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-25 7.7E-30 245.9 48.7 381 168-563 6-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 7.7E-22 2.6E-26 225.6 39.2 441 167-620 12-485 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.8E-21 6.3E-26 218.7 41.7 315 194-521 23-370 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2.7E-21 9.1E-26 217.4 41.6 328 215-556 10-370 (450)
10 2gw1_A Mitochondrial precursor 99.9 4.4E-21 1.5E-25 219.3 37.9 442 197-687 6-480 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.4E-19 4.8E-24 208.2 44.9 428 168-619 32-497 (537)
12 3fp2_A TPR repeat-containing p 99.9 9.9E-20 3.4E-24 209.4 36.9 426 133-581 27-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.9E-18 2.7E-22 182.0 42.5 314 196-542 2-334 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 2.1E-17 7.2E-22 178.7 40.5 331 235-597 3-353 (359)
15 2xm6_A Protein corresponding t 99.8 3.3E-15 1.1E-19 170.1 52.6 366 180-581 26-435 (490)
16 2ooe_A Cleavage stimulation fa 99.8 8.9E-16 3.1E-20 176.6 46.5 418 184-614 2-493 (530)
17 2xm6_A Protein corresponding t 99.8 1.2E-14 4.1E-19 165.4 54.2 365 216-615 26-434 (490)
18 2ooe_A Cleavage stimulation fa 99.8 2.3E-15 7.7E-20 173.2 48.3 422 220-687 2-494 (530)
19 3hym_B Cell division cycle pro 99.8 8.2E-17 2.8E-21 172.1 32.4 286 194-490 19-314 (330)
20 3hym_B Cell division cycle pro 99.8 1.8E-16 6.1E-21 169.4 33.5 284 269-559 21-314 (330)
21 1fch_A Peroxisomal targeting s 99.8 4.3E-17 1.5E-21 177.6 25.5 289 173-469 37-354 (368)
22 1fch_A Peroxisomal targeting s 99.8 1E-16 3.6E-21 174.5 26.7 286 283-573 38-354 (368)
23 1xi4_A Clathrin heavy chain; a 99.7 1.9E-13 6.4E-18 163.4 50.9 375 91-534 990-1375(1630)
24 4eqf_A PEX5-related protein; a 99.7 4.1E-16 1.4E-20 169.9 25.1 264 196-468 64-350 (365)
25 4eqf_A PEX5-related protein; a 99.7 4.8E-16 1.6E-20 169.4 25.1 236 233-473 63-309 (365)
26 1b89_A Protein (clathrin heavy 99.7 3.7E-17 1.3E-21 176.7 15.9 287 167-501 9-303 (449)
27 4g1t_A Interferon-induced prot 99.7 1.7E-14 5.7E-19 163.0 38.0 222 195-421 49-292 (472)
28 3cv0_A Peroxisome targeting si 99.7 2.1E-15 7.1E-20 160.9 28.1 230 199-437 23-267 (327)
29 3spa_A Mtrpol, DNA-directed RN 99.7 1.9E-17 6.4E-22 191.9 12.6 118 305-422 127-248 (1134)
30 1b89_A Protein (clathrin heavy 99.7 2E-16 6.8E-21 171.0 17.4 280 209-535 15-303 (449)
31 3cv0_A Peroxisome targeting si 99.7 4.2E-15 1.4E-19 158.5 27.6 262 165-436 25-312 (327)
32 3spa_A Mtrpol, DNA-directed RN 99.7 4.9E-17 1.7E-21 188.5 11.9 153 268-425 125-287 (1134)
33 1xi4_A Clathrin heavy chain; a 99.7 1.9E-12 6.4E-17 154.9 50.7 378 168-607 992-1378(1630)
34 4g1t_A Interferon-induced prot 99.7 5.4E-14 1.9E-18 158.7 36.2 390 166-587 56-469 (472)
35 3mkr_A Coatomer subunit epsilo 99.7 3.2E-14 1.1E-18 149.8 29.0 248 282-542 11-263 (291)
36 3mkr_A Coatomer subunit epsilo 99.7 4.2E-14 1.4E-18 148.9 28.9 254 244-512 8-267 (291)
37 3uq3_A Heat shock protein STI1 99.6 1.1E-12 3.8E-17 134.3 27.3 224 236-473 6-235 (258)
38 2pl2_A Hypothetical conserved 99.6 2.6E-13 8.7E-18 136.3 22.0 198 194-400 2-210 (217)
39 3uq3_A Heat shock protein STI1 99.5 1.3E-12 4.5E-17 133.7 26.9 221 378-611 8-234 (258)
40 2ho1_A Type 4 fimbrial biogene 99.5 5.1E-12 1.7E-16 129.3 29.1 202 197-405 37-239 (252)
41 2h6f_A Protein farnesyltransfe 99.5 2.4E-12 8.3E-17 140.3 27.7 230 197-436 97-344 (382)
42 2pl2_A Hypothetical conserved 99.5 1E-12 3.6E-17 131.8 22.9 199 232-436 2-211 (217)
43 2vq2_A PILW, putative fimbrial 99.5 1E-11 3.5E-16 124.1 28.3 203 196-404 7-211 (225)
44 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.4E-13 1.5E-17 139.0 18.8 247 174-433 18-269 (275)
45 2h6f_A Protein farnesyltransfe 99.5 5.6E-12 1.9E-16 137.5 27.4 242 167-421 103-364 (382)
46 3u4t_A TPR repeat-containing p 99.5 3.6E-12 1.2E-16 132.0 24.2 27 447-473 223-249 (272)
47 4e6h_A MRNA 3'-END-processing 99.5 1.1E-09 3.9E-14 127.3 47.6 429 180-617 51-574 (679)
48 1ouv_A Conserved hypothetical 99.5 7.6E-11 2.6E-15 122.4 33.8 223 196-439 5-251 (273)
49 3u4t_A TPR repeat-containing p 99.5 8E-12 2.7E-16 129.3 25.9 129 200-333 6-136 (272)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.3E-13 1.8E-17 138.4 16.9 188 209-402 17-204 (275)
51 1ouv_A Conserved hypothetical 99.5 8.2E-11 2.8E-15 122.1 33.6 222 341-579 7-252 (273)
52 3e4b_A ALGK; tetratricopeptide 99.5 1.9E-12 6.5E-17 145.3 22.6 344 203-581 9-390 (452)
53 2q7f_A YRRB protein; TPR, prot 99.5 2.5E-12 8.5E-17 130.5 21.5 201 196-404 22-222 (243)
54 2vq2_A PILW, putative fimbrial 99.5 2.3E-11 7.9E-16 121.5 27.8 199 272-473 10-210 (225)
55 2ho1_A Type 4 fimbrial biogene 99.5 2E-11 7E-16 124.7 27.7 199 271-473 38-237 (252)
56 3e4b_A ALGK; tetratricopeptide 99.5 4E-12 1.4E-16 142.7 24.2 347 167-545 9-389 (452)
57 2q7f_A YRRB protein; TPR, prot 99.5 6.2E-12 2.1E-16 127.6 22.6 200 234-438 22-221 (243)
58 4e6h_A MRNA 3'-END-processing 99.4 6.6E-09 2.3E-13 120.8 46.5 435 212-690 47-575 (679)
59 3sf4_A G-protein-signaling mod 99.4 8.6E-12 2.9E-16 137.1 21.0 302 195-531 7-364 (406)
60 4a1s_A PINS, partner of inscut 99.4 6.8E-12 2.3E-16 138.6 19.5 277 198-509 49-372 (411)
61 4a1s_A PINS, partner of inscut 99.4 9.5E-12 3.3E-16 137.4 20.5 130 447-576 225-370 (411)
62 3sf4_A G-protein-signaling mod 99.4 1.3E-11 4.4E-16 135.6 20.8 307 232-567 6-365 (406)
63 3ro2_A PINS homolog, G-protein 99.4 2.2E-11 7.6E-16 129.4 22.0 201 198-402 6-250 (338)
64 2ond_A Cleavage stimulation fa 99.4 5.5E-10 1.9E-14 118.4 30.8 216 214-438 33-269 (308)
65 3ro2_A PINS homolog, G-protein 99.4 2E-11 6.8E-16 129.8 19.7 131 447-577 185-331 (338)
66 2ond_A Cleavage stimulation fa 99.3 2.8E-10 9.6E-15 120.6 27.8 219 178-405 33-271 (308)
67 3vtx_A MAMA; tetratricopeptide 99.3 1.7E-10 5.7E-15 111.8 22.4 167 196-369 4-170 (184)
68 4abn_A Tetratricopeptide repea 99.3 6.7E-11 2.3E-15 133.5 21.7 210 177-397 84-314 (474)
69 4abn_A Tetratricopeptide repea 99.3 6.1E-11 2.1E-15 133.9 20.4 223 213-471 84-318 (474)
70 3vtx_A MAMA; tetratricopeptide 99.3 4.6E-10 1.6E-14 108.7 23.3 168 233-404 3-170 (184)
71 3nf1_A KLC 1, kinesin light ch 99.3 2.7E-11 9.2E-16 127.7 14.5 97 307-403 113-223 (311)
72 3ulq_A Response regulator aspa 99.3 5.9E-10 2E-14 122.0 25.0 228 346-576 109-366 (383)
73 3nf1_A KLC 1, kinesin light ch 99.2 3.2E-11 1.1E-15 127.1 13.0 173 196-368 26-223 (311)
74 3ulq_A Response regulator aspa 99.2 8.2E-10 2.8E-14 120.8 24.3 229 311-542 109-367 (383)
75 1hz4_A MALT regulatory protein 99.2 1.2E-08 4E-13 111.0 29.6 94 309-402 97-201 (373)
76 1hz4_A MALT regulatory protein 99.2 1.1E-08 3.8E-13 111.2 28.9 271 200-473 17-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.2 2.4E-09 8.1E-14 102.8 20.8 161 199-366 10-170 (186)
78 3q15_A PSP28, response regulat 99.1 7.5E-09 2.6E-13 113.0 26.6 226 312-541 108-363 (378)
79 3as5_A MAMA; tetratricopeptide 99.1 4.6E-09 1.6E-13 100.8 21.7 164 236-403 9-172 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.1 1.3E-09 4.6E-14 128.1 21.0 165 196-367 8-172 (723)
81 3q15_A PSP28, response regulat 99.1 8.9E-09 3E-13 112.4 26.1 228 345-576 106-363 (378)
82 4gyw_A UDP-N-acetylglucosamine 99.1 2.5E-09 8.4E-14 125.9 20.6 168 232-403 6-173 (723)
83 4i17_A Hypothetical protein; T 99.0 1.6E-08 5.5E-13 101.5 21.5 196 195-405 5-210 (228)
84 4i17_A Hypothetical protein; T 99.0 2.4E-08 8.4E-13 100.2 22.6 207 232-451 4-220 (228)
85 3edt_B KLC 2, kinesin light ch 99.0 4.3E-09 1.5E-13 108.7 14.9 132 272-403 45-197 (283)
86 3edt_B KLC 2, kinesin light ch 99.0 3.8E-09 1.3E-13 109.1 13.9 160 174-333 14-197 (283)
87 1qqe_A Vesicular transport pro 99.0 5.9E-08 2E-12 101.7 22.3 188 385-576 47-267 (292)
88 3mv2_B Coatomer subunit epsilo 98.9 4.4E-07 1.5E-11 94.0 26.0 178 359-543 85-282 (310)
89 3dra_A Protein farnesyltransfe 98.9 5.9E-07 2E-11 93.9 26.9 219 176-403 48-286 (306)
90 3dra_A Protein farnesyltransfe 98.9 7.7E-07 2.6E-11 93.0 27.3 223 208-438 43-286 (306)
91 1qqe_A Vesicular transport pro 98.9 4.7E-08 1.6E-12 102.5 17.7 207 390-611 32-267 (292)
92 2fo7_A Synthetic consensus TPR 98.8 1.2E-07 4.1E-12 85.2 17.3 127 200-332 4-130 (136)
93 3urz_A Uncharacterized protein 98.8 1.1E-07 3.9E-12 94.0 18.4 95 199-298 6-116 (208)
94 2fo7_A Synthetic consensus TPR 98.8 1.7E-07 5.8E-12 84.2 17.9 94 307-402 37-130 (136)
95 3mv2_B Coatomer subunit epsilo 98.8 1.7E-06 5.7E-11 89.7 27.0 245 245-513 23-286 (310)
96 2pzi_A Probable serine/threoni 98.8 3.3E-08 1.1E-12 116.6 15.5 174 208-390 402-583 (681)
97 2pzi_A Probable serine/threoni 98.8 3.2E-08 1.1E-12 116.8 15.2 174 172-355 402-583 (681)
98 3qky_A Outer membrane assembly 98.8 2.2E-07 7.6E-12 95.3 19.7 187 194-404 12-224 (261)
99 3qky_A Outer membrane assembly 98.8 1.8E-07 6.2E-12 96.0 18.9 181 167-369 21-224 (261)
100 3urz_A Uncharacterized protein 98.8 1.5E-07 5E-12 93.2 17.0 168 168-346 11-196 (208)
101 2uy1_A Cleavage stimulation fa 98.8 2.4E-05 8E-10 88.1 36.8 121 482-610 288-410 (493)
102 2r5s_A Uncharacterized protein 98.7 2.3E-07 7.7E-12 89.0 15.8 161 200-367 9-171 (176)
103 3qou_A Protein YBBN; thioredox 98.7 3.9E-07 1.3E-11 95.1 18.8 167 194-367 114-282 (287)
104 4ga2_A E3 SUMO-protein ligase 98.7 6E-08 2.1E-12 90.5 10.4 119 173-298 9-128 (150)
105 2vsy_A XCC0866; transferase, g 98.7 3.2E-07 1.1E-11 106.0 18.4 153 175-335 3-158 (568)
106 3q7a_A Farnesyltransferase alp 98.7 7.8E-06 2.7E-10 86.4 27.3 138 174-319 67-215 (349)
107 4ga2_A E3 SUMO-protein ligase 98.7 6.8E-08 2.3E-12 90.1 10.4 146 203-355 3-149 (150)
108 2vsy_A XCC0866; transferase, g 98.7 3.2E-07 1.1E-11 105.9 18.3 154 210-370 2-158 (568)
109 2r5s_A Uncharacterized protein 98.7 1.9E-07 6.6E-12 89.5 13.9 162 237-402 8-171 (176)
110 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.6E-06 5.4E-11 86.8 20.5 207 374-615 3-215 (225)
111 3qou_A Protein YBBN; thioredox 98.6 6.4E-07 2.2E-11 93.5 17.9 167 232-402 114-282 (287)
112 3q7a_A Farnesyltransferase alp 98.6 8.6E-06 2.9E-10 86.0 26.5 222 209-438 66-330 (349)
113 3rjv_A Putative SEL1 repeat pr 98.6 2.2E-06 7.4E-11 84.9 20.2 105 359-473 5-117 (212)
114 2uy1_A Cleavage stimulation fa 98.6 5.7E-05 1.9E-09 85.0 33.9 359 175-577 28-412 (493)
115 2ifu_A Gamma-SNAP; membrane fu 98.6 7.5E-07 2.6E-11 94.0 17.5 124 384-508 45-183 (307)
116 3rjv_A Putative SEL1 repeat pr 98.6 3.8E-06 1.3E-10 83.2 21.5 176 323-510 4-198 (212)
117 2yhc_A BAMD, UPF0169 lipoprote 98.6 2.6E-06 8.9E-11 85.2 20.5 187 197-406 4-215 (225)
118 2ifu_A Gamma-SNAP; membrane fu 98.6 7.7E-07 2.6E-11 93.9 16.8 165 210-403 4-183 (307)
119 2c2l_A CHIP, carboxy terminus 98.5 7.9E-07 2.7E-11 92.5 12.0 194 195-403 2-198 (281)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.1E-05 3.7E-10 79.4 19.4 124 276-404 12-150 (213)
121 3u3w_A Transcriptional activat 98.4 1.2E-05 4.2E-10 83.8 20.6 163 203-367 81-264 (293)
122 2qfc_A PLCR protein; TPR, HTH, 98.4 3.2E-05 1.1E-09 80.6 23.5 166 198-367 76-264 (293)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.5E-05 5.1E-10 78.3 19.6 130 448-581 9-153 (213)
124 1a17_A Serine/threonine protei 98.4 8.3E-06 2.8E-10 76.4 16.9 129 198-332 14-144 (166)
125 3u3w_A Transcriptional activat 98.4 2.8E-05 9.5E-10 81.1 22.4 126 382-507 82-223 (293)
126 4gco_A Protein STI-1; structur 98.4 7.5E-06 2.6E-10 73.5 15.0 97 198-299 14-110 (126)
127 4f3v_A ESX-1 secretion system 98.4 1.4E-06 4.8E-11 89.0 11.2 192 173-369 18-237 (282)
128 1na0_A Designed protein CTPR3; 98.4 1.3E-05 4.4E-10 70.6 16.1 97 197-298 9-105 (125)
129 4f3v_A ESX-1 secretion system 98.4 1.7E-05 5.7E-10 81.1 18.7 199 209-416 18-247 (282)
130 3dss_A Geranylgeranyl transfer 98.3 0.00021 7.2E-09 75.0 27.4 172 173-353 41-240 (331)
131 3dss_A Geranylgeranyl transfer 98.3 0.00029 1E-08 73.9 28.3 172 207-386 39-238 (331)
132 3gyz_A Chaperone protein IPGC; 98.3 7.2E-06 2.4E-10 76.2 14.0 99 196-299 35-133 (151)
133 2e2e_A Formate-dependent nitri 98.3 3.7E-06 1.3E-10 80.2 12.4 120 173-299 22-144 (177)
134 4gco_A Protein STI-1; structur 98.3 8E-06 2.7E-10 73.3 13.6 99 235-335 13-111 (126)
135 1a17_A Serine/threonine protei 98.3 1.9E-05 6.5E-10 73.8 16.9 96 237-334 15-110 (166)
136 3gw4_A Uncharacterized protein 98.3 5.7E-06 2E-10 80.5 13.6 155 209-367 4-174 (203)
137 1na0_A Designed protein CTPR3; 98.3 1.8E-05 6.3E-10 69.5 15.7 98 235-334 9-106 (125)
138 1p5q_A FKBP52, FK506-binding p 98.3 1.6E-06 5.5E-11 92.7 10.1 87 271-359 197-283 (336)
139 2qfc_A PLCR protein; TPR, HTH, 98.3 7.5E-05 2.6E-09 77.8 22.9 161 416-576 81-264 (293)
140 2vyi_A SGTA protein; chaperone 98.3 1.4E-05 4.9E-10 70.9 15.0 118 197-320 12-129 (131)
141 2lni_A Stress-induced-phosphop 98.3 1.1E-05 3.8E-10 72.1 14.0 98 196-298 15-112 (133)
142 3gw4_A Uncharacterized protein 98.3 8E-06 2.7E-10 79.5 13.4 159 173-333 4-175 (203)
143 2lni_A Stress-induced-phosphop 98.3 1.7E-05 5.7E-10 71.0 14.5 120 232-354 13-132 (133)
144 2c2l_A CHIP, carboxy terminus 98.3 4.1E-06 1.4E-10 87.0 11.8 192 376-578 5-199 (281)
145 2vgx_A Chaperone SYCD; alterna 98.2 4.3E-06 1.5E-10 77.5 10.0 98 196-298 20-117 (148)
146 2e2e_A Formate-dependent nitri 98.2 1E-05 3.4E-10 77.2 13.0 122 208-335 21-145 (177)
147 2vyi_A SGTA protein; chaperone 98.2 3E-05 1E-09 68.8 15.4 95 307-403 14-108 (131)
148 3upv_A Heat shock protein STI1 98.2 2.8E-05 9.6E-10 69.3 14.7 98 197-299 4-101 (126)
149 1p5q_A FKBP52, FK506-binding p 98.2 2.7E-05 9.2E-10 83.1 16.3 150 175-332 127-292 (336)
150 3gyz_A Chaperone protein IPGC; 98.2 7.4E-06 2.5E-10 76.1 10.3 101 232-334 33-133 (151)
151 2fbn_A 70 kDa peptidylprolyl i 98.2 2.4E-06 8.1E-11 83.5 7.2 96 198-298 39-150 (198)
152 2fbn_A 70 kDa peptidylprolyl i 98.1 4.6E-06 1.6E-10 81.4 8.7 123 271-395 39-176 (198)
153 1elw_A TPR1-domain of HOP; HOP 98.1 6.9E-05 2.4E-09 65.0 15.5 98 197-299 4-101 (118)
154 2vgx_A Chaperone SYCD; alterna 98.1 8.9E-06 3.1E-10 75.3 10.0 101 232-334 18-118 (148)
155 2xcb_A PCRH, regulatory protei 98.1 1.3E-05 4.5E-10 73.5 10.5 97 197-298 18-114 (142)
156 4gcn_A Protein STI-1; structur 98.1 4.8E-05 1.7E-09 68.2 13.6 97 198-298 9-111 (127)
157 2xcb_A PCRH, regulatory protei 98.1 1.7E-05 5.8E-10 72.7 10.4 101 232-334 15-115 (142)
158 3q49_B STIP1 homology and U bo 98.0 7.5E-05 2.6E-09 67.3 14.3 99 195-298 7-105 (137)
159 1elr_A TPR2A-domain of HOP; HO 98.0 4.6E-05 1.6E-09 67.6 12.2 97 198-298 5-107 (131)
160 1elw_A TPR1-domain of HOP; HOP 98.0 0.00016 5.4E-09 62.6 15.3 96 237-334 6-101 (118)
161 3sz7_A HSC70 cochaperone (SGT) 98.0 8.5E-05 2.9E-09 69.7 14.2 99 196-299 10-108 (164)
162 3upv_A Heat shock protein STI1 98.0 0.00014 4.8E-09 64.6 14.5 94 308-403 7-100 (126)
163 1hxi_A PEX5, peroxisome target 98.0 5.8E-05 2E-09 67.0 11.5 93 201-298 21-113 (121)
164 2kck_A TPR repeat; tetratricop 97.9 7.5E-05 2.6E-09 64.2 11.6 100 196-299 5-106 (112)
165 4gcn_A Protein STI-1; structur 97.9 6.2E-05 2.1E-09 67.5 11.1 60 447-508 10-70 (127)
166 1hxi_A PEX5, peroxisome target 97.9 8.4E-05 2.9E-09 66.0 11.5 96 164-265 20-115 (121)
167 1dce_A Protein (RAB geranylger 97.9 0.00046 1.6E-08 78.8 20.5 170 177-355 45-241 (567)
168 3q49_B STIP1 homology and U bo 97.9 0.00017 5.6E-09 65.0 13.5 101 232-334 6-106 (137)
169 2dba_A Smooth muscle cell asso 97.9 0.00022 7.6E-09 64.8 14.6 99 195-298 26-127 (148)
170 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00017 5.7E-09 67.6 13.7 102 232-335 8-109 (164)
171 2dba_A Smooth muscle cell asso 97.8 0.00046 1.6E-08 62.7 15.6 101 232-335 25-129 (148)
172 1wao_1 Serine/threonine protei 97.8 0.00011 3.9E-09 82.2 13.6 117 171-294 16-134 (477)
173 4b4t_Q 26S proteasome regulato 97.8 0.00055 1.9E-08 75.3 18.8 163 204-366 11-201 (434)
174 1elr_A TPR2A-domain of HOP; HO 97.8 0.00023 8E-09 62.9 12.9 94 309-403 8-107 (131)
175 4b4t_Q 26S proteasome regulato 97.8 0.00097 3.3E-08 73.2 20.7 165 308-472 58-243 (434)
176 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 3.1E-05 1.1E-09 86.4 8.1 30 234-263 267-296 (457)
177 1dce_A Protein (RAB geranylger 97.8 0.00073 2.5E-08 77.2 19.5 137 209-352 40-190 (567)
178 2kck_A TPR repeat; tetratricop 97.8 0.00027 9.2E-09 60.5 12.4 95 167-267 12-109 (112)
179 3rkv_A Putative peptidylprolyl 97.8 0.00029 1E-08 65.8 13.2 102 197-299 11-126 (162)
180 2xev_A YBGF; tetratricopeptide 97.7 0.00057 2E-08 60.6 14.3 92 202-298 7-104 (129)
181 3ro3_A PINS homolog, G-protein 97.7 0.00021 7E-09 65.8 11.6 130 447-576 11-156 (164)
182 3ro3_A PINS homolog, G-protein 97.7 0.0002 6.8E-09 66.0 11.0 96 447-542 51-157 (164)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00043 1.5E-08 77.1 15.2 143 175-325 248-405 (457)
184 2xev_A YBGF; tetratricopeptide 97.7 0.00098 3.3E-08 59.0 14.7 96 165-266 6-107 (129)
185 1wao_1 Serine/threonine protei 97.7 0.00011 3.6E-09 82.5 9.9 89 205-298 14-102 (477)
186 1ihg_A Cyclophilin 40; ppiase 97.6 0.00041 1.4E-08 74.8 14.1 100 198-298 224-335 (370)
187 3k9i_A BH0479 protein; putativ 97.6 0.00012 4.1E-09 64.3 8.0 88 174-265 3-91 (117)
188 2hr2_A Hypothetical protein; a 97.6 0.00048 1.6E-08 63.6 12.2 95 198-297 12-129 (159)
189 2hr2_A Hypothetical protein; a 97.6 0.00064 2.2E-08 62.7 12.3 92 448-541 14-129 (159)
190 3k9i_A BH0479 protein; putativ 97.6 0.00012 4E-09 64.4 6.9 89 209-299 2-90 (117)
191 1ihg_A Cyclophilin 40; ppiase 97.5 0.00075 2.6E-08 72.8 14.0 138 236-395 224-361 (370)
192 2l6j_A TPR repeat-containing p 97.5 0.00016 5.5E-09 62.2 6.2 96 196-296 3-104 (111)
193 3rkv_A Putative peptidylprolyl 97.4 0.0016 5.3E-08 60.7 13.4 96 377-473 13-125 (162)
194 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00043 1.5E-08 73.7 9.5 28 199-226 181-208 (338)
195 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00061 2.1E-08 72.5 10.2 91 167-264 185-293 (338)
196 2kat_A Uncharacterized protein 97.3 0.0012 3.9E-08 57.5 10.1 79 179-263 3-81 (115)
197 2kat_A Uncharacterized protein 97.3 0.0012 4.2E-08 57.3 10.0 80 214-298 2-81 (115)
198 1zu2_A Mitochondrial import re 97.3 0.00054 1.8E-08 63.1 7.5 68 175-248 16-93 (158)
199 1na3_A Designed protein CTPR2; 97.2 0.0026 9E-08 52.0 11.0 81 197-282 9-89 (91)
200 3n71_A Histone lysine methyltr 97.2 0.0056 1.9E-07 68.2 16.7 123 455-577 319-463 (490)
201 3n71_A Histone lysine methyltr 97.2 0.0014 5E-08 73.0 11.6 127 207-333 319-463 (490)
202 1klx_A Cysteine rich protein B 97.1 0.0074 2.5E-07 54.5 13.8 15 319-333 111-125 (138)
203 1zu2_A Mitochondrial import re 97.1 0.0011 3.7E-08 61.1 7.8 115 207-334 12-147 (158)
204 1klx_A Cysteine rich protein B 97.1 0.01 3.5E-07 53.6 14.4 55 346-403 31-89 (138)
205 2l6j_A TPR repeat-containing p 96.9 0.0011 3.9E-08 56.7 6.1 61 482-542 6-66 (111)
206 3ma5_A Tetratricopeptide repea 96.9 0.004 1.4E-07 52.6 8.8 65 195-263 5-69 (100)
207 1na3_A Designed protein CTPR2; 96.8 0.012 4.1E-07 47.9 11.2 24 343-366 46-69 (91)
208 3ma5_A Tetratricopeptide repea 96.7 0.0073 2.5E-07 50.9 9.0 66 232-298 4-69 (100)
209 3mkq_A Coatomer beta'-subunit; 96.5 0.11 3.9E-06 61.7 21.6 128 379-538 633-760 (814)
210 2kc7_A BFR218_protein; tetratr 96.1 0.011 3.8E-07 49.3 7.1 59 204-266 7-66 (99)
211 3ly7_A Transcriptional activat 96.0 0.2 6.8E-06 52.7 17.0 72 303-378 275-346 (372)
212 3ly7_A Transcriptional activat 95.8 0.21 7.2E-06 52.5 16.3 142 194-344 191-347 (372)
213 3mkq_A Coatomer beta'-subunit; 95.7 0.2 7E-06 59.5 18.1 47 245-297 662-708 (814)
214 2kc7_A BFR218_protein; tetratr 95.5 0.027 9.3E-07 46.8 6.9 82 167-262 6-88 (99)
215 3bee_A Putative YFRE protein; 95.5 0.11 3.7E-06 43.1 10.2 69 194-266 3-74 (93)
216 3qww_A SET and MYND domain-con 95.5 0.072 2.5E-06 58.2 11.7 84 458-541 311-409 (433)
217 3qww_A SET and MYND domain-con 95.3 0.033 1.1E-06 60.9 8.5 87 210-296 311-408 (433)
218 3qwp_A SET and MYND domain-con 95.3 0.16 5.6E-06 55.4 13.9 90 452-541 294-398 (429)
219 3qwp_A SET and MYND domain-con 95.2 0.08 2.7E-06 57.8 11.0 61 272-332 331-398 (429)
220 3u64_A Protein TP_0956; tetrat 95.2 0.8 2.8E-05 46.2 17.1 93 321-415 179-282 (301)
221 3mkq_B Coatomer subunit alpha; 95.0 1.7 6E-05 40.3 17.8 102 243-365 13-114 (177)
222 1wy6_A Hypothetical protein ST 94.7 0.77 2.6E-05 40.2 13.1 138 353-512 20-157 (172)
223 1pc2_A Mitochondria fission pr 94.2 0.33 1.1E-05 44.0 10.7 80 462-542 15-99 (152)
224 3u64_A Protein TP_0956; tetrat 94.1 0.44 1.5E-05 48.1 12.3 91 461-553 179-281 (301)
225 3bee_A Putative YFRE protein; 93.9 0.37 1.3E-05 39.7 9.7 68 232-300 3-73 (93)
226 3mkq_B Coatomer subunit alpha; 93.7 3.6 0.00012 38.1 16.9 23 377-399 36-58 (177)
227 2v5f_A Prolyl 4-hydroxylase su 93.2 0.6 2.1E-05 39.2 10.1 71 196-266 4-77 (104)
228 1pc2_A Mitochondria fission pr 93.1 0.45 1.5E-05 43.1 9.3 66 195-263 30-99 (152)
229 1wy6_A Hypothetical protein ST 92.9 4.6 0.00016 35.4 15.6 63 343-406 94-156 (172)
230 2v5f_A Prolyl 4-hydroxylase su 92.7 0.64 2.2E-05 39.1 9.6 65 517-581 8-78 (104)
231 4ady_A RPN2, 26S proteasome re 91.1 29 0.001 41.0 32.3 188 421-613 385-589 (963)
232 4h7y_A Dual specificity protei 89.4 2.6 8.8E-05 37.8 10.0 105 479-585 12-130 (161)
233 4h7y_A Dual specificity protei 89.1 3 0.0001 37.4 10.2 59 459-518 74-132 (161)
234 4ady_A RPN2, 26S proteasome re 88.6 46 0.0016 39.4 31.0 221 385-612 384-622 (963)
235 4b4t_P 26S proteasome regulato 87.5 35 0.0012 36.9 20.7 94 449-542 141-246 (445)
236 1nzn_A CGI-135 protein, fissio 87.1 2.6 8.8E-05 36.7 8.5 25 517-541 77-101 (126)
237 1nzn_A CGI-135 protein, fissio 86.4 2.4 8.2E-05 36.9 7.9 20 314-333 83-102 (126)
238 4b4t_P 26S proteasome regulato 86.4 40 0.0014 36.4 20.0 94 309-402 141-245 (445)
239 4gns_B Protein CSD3, chitin bi 85.0 3.9 0.00013 47.4 11.2 128 239-367 252-398 (754)
240 2ff4_A Probable regulatory pro 84.7 7.4 0.00025 41.5 12.7 71 273-344 174-249 (388)
241 2ff4_A Probable regulatory pro 84.2 3.3 0.00011 44.2 9.7 67 240-307 176-247 (388)
242 4gns_B Protein CSD3, chitin bi 83.5 8.3 0.00029 44.6 13.1 44 658-703 615-658 (754)
243 3lvg_A Clathrin heavy chain 1; 82.9 0.00014 4.9E-09 77.6 -24.3 231 197-467 54-284 (624)
244 4fhn_B Nucleoporin NUP120; pro 79.6 29 0.001 42.7 17.1 150 240-396 817-992 (1139)
245 4fhn_B Nucleoporin NUP120; pro 77.1 32 0.0011 42.4 16.3 150 275-431 817-992 (1139)
246 1qsa_A Protein (soluble lytic 72.5 1.3E+02 0.0045 33.9 27.1 115 425-542 229-347 (618)
247 1zbp_A Hypothetical protein VP 71.6 9.7 0.00033 37.8 7.7 116 205-334 5-129 (273)
248 1v54_E Cytochrome C oxidase po 69.9 17 0.00058 30.0 7.3 63 529-592 25-87 (109)
249 1v54_E Cytochrome C oxidase po 68.5 27 0.00094 28.8 8.3 59 288-347 28-86 (109)
250 3lpz_A GET4 (YOR164C homolog); 64.9 1.3E+02 0.0044 30.8 22.4 111 343-468 38-159 (336)
251 2p58_C Putative type III secre 63.9 34 0.0012 28.1 7.9 51 243-299 48-98 (116)
252 3ffl_A Anaphase-promoting comp 63.8 36 0.0012 31.0 9.2 59 168-226 27-92 (167)
253 3lvg_A Clathrin heavy chain 1; 63.3 0.029 9.8E-07 60.3 -12.9 216 89-353 57-276 (624)
254 3txn_A 26S proteasome regulato 62.9 1.6E+02 0.0053 31.1 22.3 92 450-541 104-208 (394)
255 3o48_A Mitochondria fission 1 62.7 39 0.0013 29.5 8.8 66 195-263 38-106 (134)
256 2uwj_G Type III export protein 59.5 33 0.0011 28.2 7.1 50 244-299 48-97 (115)
257 2p58_C Putative type III secre 58.2 70 0.0024 26.3 8.8 53 557-615 48-100 (116)
258 2wpv_A GET4, UPF0363 protein Y 57.4 1.7E+02 0.0057 29.7 20.5 112 237-363 35-157 (312)
259 3o48_A Mitochondria fission 1 56.8 99 0.0034 26.9 11.4 25 517-541 81-105 (134)
260 2y69_E Cytochrome C oxidase su 56.8 36 0.0012 29.7 7.3 62 530-592 69-130 (152)
261 2y69_E Cytochrome C oxidase su 55.5 55 0.0019 28.6 8.3 58 289-347 72-129 (152)
262 3ffl_A Anaphase-promoting comp 55.0 60 0.0021 29.5 9.1 119 199-332 22-149 (167)
263 3eiq_C Programmed cell death p 54.1 99 0.0034 32.1 11.9 70 483-552 220-291 (358)
264 3esl_A Checkpoint serine/threo 53.9 95 0.0033 29.2 10.5 54 213-268 95-148 (202)
265 2uwj_G Type III export protein 53.1 69 0.0023 26.3 8.0 53 557-615 47-99 (115)
266 1y8m_A FIS1; mitochondria, unk 52.9 1.2E+02 0.0041 26.7 12.3 71 443-513 37-110 (144)
267 3esl_A Checkpoint serine/threo 50.8 75 0.0026 29.9 9.3 55 528-582 93-148 (202)
268 4b4t_R RPN7, 26S proteasome re 50.1 1E+02 0.0034 33.0 11.8 60 273-332 134-195 (429)
269 3eiq_C Programmed cell death p 50.0 1.1E+02 0.0039 31.6 11.6 25 378-402 220-244 (358)
270 4b4t_R RPN7, 26S proteasome re 49.7 60 0.0021 34.8 10.0 59 448-506 134-194 (429)
271 2qx5_A Nucleoporin NIC96; mRNA 47.6 3.5E+02 0.012 30.6 17.1 25 237-262 155-179 (661)
272 2wpv_A GET4, UPF0363 protein Y 45.3 2.6E+02 0.0088 28.3 22.4 167 342-541 35-215 (312)
273 4a1g_A Mitotic checkpoint seri 41.4 1.7E+02 0.0059 26.0 9.8 51 216-268 84-134 (152)
274 1y8m_A FIS1; mitochondria, unk 39.3 2E+02 0.0068 25.3 13.4 71 477-549 36-110 (144)
275 4a1g_A Mitotic checkpoint seri 39.3 1.5E+02 0.005 26.5 9.0 49 499-547 84-134 (152)
276 2wvi_A Mitotic checkpoint seri 38.5 95 0.0033 28.1 7.7 54 531-584 77-131 (164)
277 1zbp_A Hypothetical protein VP 35.0 3.4E+02 0.012 26.7 14.4 19 560-578 111-129 (273)
278 2wvi_A Mitotic checkpoint seri 34.4 2.6E+02 0.0089 25.2 10.0 54 214-269 77-130 (164)
279 2nsz_A Programmed cell death p 33.1 1.1E+02 0.0038 26.4 7.1 22 485-506 12-33 (129)
280 3fau_A NEDD4-binding protein 2 32.8 1.6E+02 0.0054 22.9 7.4 58 701-760 2-69 (82)
281 2d2s_A Exocyst complex compone 32.3 3.1E+02 0.011 26.4 10.9 29 339-367 90-118 (235)
282 2zu6_B Programmed cell death p 31.5 64 0.0022 32.8 6.0 23 309-331 7-29 (307)
283 1wdy_A 2-5A-dependent ribonucl 30.2 32 0.0011 33.8 3.6 7 576-582 273-279 (285)
284 3txn_A 26S proteasome regulato 27.7 5.5E+02 0.019 26.8 23.8 58 380-437 104-166 (394)
285 3ltm_A Alpha-REP4; protein eng 27.5 3.6E+02 0.012 24.6 19.8 17 374-390 156-172 (211)
286 3mv2_A Coatomer subunit alpha; 26.2 4.2E+02 0.014 26.8 10.8 54 529-582 185-240 (325)
287 1k1a_A B-cell lymphoma 3-encod 25.8 1E+02 0.0035 29.1 6.4 23 205-227 14-36 (241)
288 4aez_C MAD3, mitotic spindle c 25.6 1.9E+02 0.0065 27.6 7.7 52 531-582 131-183 (223)
289 2ion_A PDCD4, programmed cell 25.5 1.1E+02 0.0036 27.4 5.7 24 484-507 13-36 (152)
290 2r9g_A AAA ATPase, central reg 25.3 4E+02 0.014 24.9 9.6 53 283-336 27-84 (204)
291 3pvs_A Replication-associated 25.3 4.8E+02 0.016 27.8 12.1 34 387-420 267-300 (447)
292 2d2s_A Exocyst complex compone 25.2 3.4E+02 0.012 26.1 9.8 22 382-403 25-46 (235)
293 2nsz_A Programmed cell death p 24.9 3.2E+02 0.011 23.3 9.2 64 238-302 10-75 (129)
294 1k1a_A B-cell lymphoma 3-encod 24.7 70 0.0024 30.3 4.9 20 386-405 17-36 (241)
295 2zu6_B Programmed cell death p 24.3 5.5E+02 0.019 25.7 12.6 27 237-263 5-31 (307)
296 3mv2_A Coatomer subunit alpha; 24.2 5.7E+02 0.019 25.8 11.9 53 462-514 187-241 (325)
297 3l6a_A Eukaryotic translation 23.7 5.8E+02 0.02 26.3 11.9 26 238-263 15-40 (364)
298 3eu9_A Huntingtin-interacting 23.3 40 0.0014 32.0 2.8 15 207-221 16-30 (240)
299 3ltm_A Alpha-REP4; protein eng 23.2 4.3E+02 0.015 24.1 20.8 154 195-368 31-184 (211)
300 2r9g_A AAA ATPase, central reg 22.7 4.7E+02 0.016 24.4 10.6 37 387-424 26-62 (204)
301 1wdy_A 2-5A-dependent ribonucl 22.7 61 0.0021 31.6 4.0 13 465-477 199-211 (285)
302 1qsa_A Protein (soluble lytic 22.5 8.3E+02 0.029 27.2 36.1 397 148-585 55-486 (618)
303 2fe3_A Peroxide operon regulat 22.3 2.7E+02 0.0092 24.3 7.9 59 539-598 12-70 (145)
304 2ion_A PDCD4, programmed cell 21.2 3E+02 0.01 24.4 7.8 64 237-301 11-76 (152)
305 2d9i_A NEDD4-binding protein 2 20.9 3.1E+02 0.011 21.9 7.3 59 700-760 9-77 (96)
306 4aez_C MAD3, mitotic spindle c 20.8 1.5E+02 0.005 28.4 5.9 52 252-303 131-183 (223)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-35 Score=346.13 Aligned_cols=462 Identities=8% Similarity=-0.013 Sum_probs=330.5
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 172 KVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251 (827)
Q Consensus 172 ~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (827)
...+++++|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.+|.++|++
T Consensus 95 ~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-----NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-----GTCHHHHHHHHHHHHHTTCH
T ss_pred HHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHhhH
Confidence 344455555555554443 2344444445555555555555555555544322 33444555555555555555
Q ss_pred HHHHHHHHHhHhC---------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH
Q 003353 252 EMSYCCFKKVLDS---------------DCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316 (827)
Q Consensus 252 ~~A~~~~~~m~~~---------------g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~ 316 (827)
++|.++|+++... +...+..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+...+.
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhc
Confidence 5555555422111 11123445555555555555555555555555443211 2223333332222
Q ss_pred HcCCHHH--HHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 317 KSGRLDA--AIKL-FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393 (827)
Q Consensus 317 ~~g~~~~--A~~~-~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 393 (827)
..+..+. +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHH
Confidence 1111111 1111 223333332333344555677888999999999999999865 5799999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
|+++|+++.+.+.. +..+++.++.+|.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 324 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999987644 77889999999999999999999999998654 34789999999999999999999999999987
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003353 474 AGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIV 552 (827)
Q Consensus 474 ~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 552 (827)
. .| +..+|+.++.+|.+.|++++|.++|+++.+.++....++..++.+|.+.|++++|.++|+++.+... .+..+|
T Consensus 402 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 478 (597)
T 2xpi_A 402 M--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLL 478 (597)
T ss_dssp H--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHH
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 3 34 5779999999999999999999999999998776667899999999999999999999999987542 367889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhcc
Q 003353 553 RQLFESCMKNALYESAKPLLETYVES----AAKVD--LVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFT 626 (827)
Q Consensus 553 ~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~pd--~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~ 626 (827)
..++..|.+.|++++|+++|+++.+. +..|+ ..+|..+..+|.+.|++++|...++.+....+
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----------- 547 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST----------- 547 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-----------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------
Confidence 99999999999999999999999886 66787 78999999999999999999998877653211
Q ss_pred CCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 627 GPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
. ...+|..|+.+|.+.|++++|.+.|+++++..+
T Consensus 548 --------------------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 548 --------------------------N-DANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp --------------------------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --------------------------C-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 0 124567999999999999999999999998764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-35 Score=344.99 Aligned_cols=465 Identities=12% Similarity=0.046 Sum_probs=387.8
Q ss_pred HHcCCCCccHHHHhhhCCCCCCHHH---HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003353 142 VNRWKWGPELETQLDKLQFVPKMVH---ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLS 218 (827)
Q Consensus 142 l~~~~~~~~~~~~l~~~~~~p~~~~---~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~ 218 (827)
.+...+..++...-...+..|+... ++.++...|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.+
T Consensus 95 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHH
Confidence 3333333343333333344565543 467777899999999999987653 5789999999999999999999999
Q ss_pred HHHHHHHcCC------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003353 219 LFDEMVHDSS------------KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLP 286 (827)
Q Consensus 219 l~~~m~~~~~------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~ 286 (827)
+|+++..... ...+.+..+|+.++.+|.+.|++++|.++|+++.+.++. +...|..+...+...+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 250 (597)
T 2xpi_A 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADE 250 (597)
T ss_dssp HHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHH
T ss_pred HHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchh
Confidence 9996432210 001335889999999999999999999999999987654 677777777665444333
Q ss_pred hHHH--HH-HHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 287 YKAF--EI-YESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363 (827)
Q Consensus 287 ~~A~--~~-~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 363 (827)
+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp HHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 2222 22 556666666667778888899999999999999999999876 588999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 003353 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443 (827)
Q Consensus 364 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 443 (827)
+++.+.+ +.+..+|+.++.+|.+.|++++|.++++++.+.. ..+..+++.++.+|.+.|++++|.++|+++.+... .
T Consensus 329 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 405 (597)
T 2xpi_A 329 TKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-Q 405 (597)
T ss_dssp HHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-C
Confidence 9999866 4477889999999999999999999999998764 34789999999999999999999999999987543 3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHH
Q 003353 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMV 523 (827)
Q Consensus 444 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~ 523 (827)
+..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..+|..++.+|.+.|++++|.++|+++.+..+....++..++.+
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 78899999999999999999999999999853 33778999999999999999999999999999877666789999999
Q ss_pred HHHcCCHHHHHHHHHHHhhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003353 524 YIKDGSVDHALRWLRFMGSS----GIRTN--NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597 (827)
Q Consensus 524 y~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 597 (827)
|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|++.|+++.+.++. +..+|..+..+|.+.
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHK 563 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHh
Confidence 99999999999999999876 66787 789999999999999999999999999987644 889999999999999
Q ss_pred CCHHHHHHHHHHHhhccCch
Q 003353 598 QDEQNERHLMAILSATKHKA 617 (827)
Q Consensus 598 g~~~~a~~l~~~l~~~~~~~ 617 (827)
|++++|...++++....|..
T Consensus 564 g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 564 KIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCC
Confidence 99999999999877665543
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.4e-29 Score=280.74 Aligned_cols=204 Identities=13% Similarity=0.192 Sum_probs=147.3
Q ss_pred HHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 003353 289 AFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR---------LDT 358 (827)
Q Consensus 289 A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~---------~~~ 358 (827)
+..+.+++.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44445555555544333 24566666666666666666666666666666666666666666665443 677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003353 439 AGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK 492 (827)
Q Consensus 439 ~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 492 (827)
.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888888888888887765
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.9e-29 Score=281.01 Aligned_cols=204 Identities=13% Similarity=0.174 Sum_probs=142.3
Q ss_pred HHHHHHHhHhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC---------HHH
Q 003353 254 SYCCFKKVLDSDCKIDT-QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR---------LDA 323 (827)
Q Consensus 254 A~~~~~~m~~~g~~p~~-~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~---------~~~ 323 (827)
+..+.+++.+.+..+.. ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444455544444332 34566666666777777777777777666667777777777766665543 567
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 324 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777778888888888888888888888887777777888888888888888888888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003353 404 AGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS 457 (827)
Q Consensus 404 ~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 457 (827)
.|+.||..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 788888888888888888888888888888888877777888888777777765
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.1e-25 Score=248.28 Aligned_cols=381 Identities=12% Similarity=0.086 Sum_probs=297.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK 283 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~ 283 (827)
...+.+.|++++|.+.++++.+.. |.+...+..+...+.+.|++++|...++...+..+ .+..+|+.+...|.+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE----PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHC
Confidence 455667888888888888887776 77777777888888888888888888887776554 3777888888888888
Q ss_pred CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 284 GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVY 363 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 363 (827)
|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+...+...|++++|.+.|
T Consensus 81 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 88888888888887642 2245578888888888888888888888888765 445566777888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 003353 364 MEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP 443 (827)
Q Consensus 364 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 443 (827)
+++.+.. +.+..+|..+...+.+.|++++|++.|+++.+.+.. +...+..+...+...|++++|...+++..+....
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence 8887754 345778888888888888888888888888876543 5677888888888888888888888888775432
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHH
Q 003353 444 TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLM 522 (827)
Q Consensus 444 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~ 522 (827)
+..++..+...|.+.|++++|.+.|+++.+. .| +..+|..+...+.+.|++++|.+.++++++..+.....+..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 5778888888888889999999888888874 44 45678888888888899999999998888876655567888888
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003353 523 VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598 (827)
Q Consensus 523 ~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 598 (827)
.|.+.|++++|.+.++++.+.. +.+..++..+...|.+.|++++|+..|+++++..+. +...|..+...+...|
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 8889999999999998888643 234667888888888999999999999998876544 5666776666665544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.2e-25 Score=245.94 Aligned_cols=381 Identities=13% Similarity=0.062 Sum_probs=332.4
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
...+...|++++|++.++.+.+.. +.+...+..+...+.+.|++++|...++..++.. +.+..+|..+...|.+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~----p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHH
Confidence 455667899999999999988875 5667788888999999999999999999999887 8899999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL 327 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 327 (827)
.|++++|...|+++.+..+. +..+|..+..++.+.|++++|.+.|+++.+... .+...+..+...+...|++++|.+.
T Consensus 80 ~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999999886543 677899999999999999999999999987532 2455777888889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 328 FQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR 407 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 407 (827)
|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|+..+++..+....
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 99999875 5668899999999999999999999999999865 446788999999999999999999999999886533
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003353 408 PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALL 487 (827)
Q Consensus 408 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 487 (827)
+..++..+...|.+.|++++|.+.|+++.+.+.. +..+|..+...|.+.|++++|.+.|+++.+. .+.+..++..+.
T Consensus 236 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLA 312 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHH
Confidence 6888999999999999999999999999986533 6788999999999999999999999999985 234678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcC
Q 003353 488 TLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNA 563 (827)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 563 (827)
..+.+.|++++|.+.++++++..+.....+..+...|.+.|++++|.+.|+++.+. .|+ ...+..+...+...|
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999999876655568899999999999999999999999974 444 556666655555544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.7e-22 Score=225.56 Aligned_cols=441 Identities=10% Similarity=-0.041 Sum_probs=302.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
.+..+...|++++|+..|+.+.+.. |+..+|..++.++.+.|++++|...++++++.. |.+..++..++.+|.
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK----PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----hHHHHHHHHHHHHHH
Confidence 3556667788888888888887764 577888888888888888888888888888776 777788888888888
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
+.|++++|...|+++.+.++. +......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888888888776542 4344444444444433333444444333332222222222211111111111111111
Q ss_pred HHHHHHHcCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHH
Q 003353 327 LFQEMKERNF---------RPSFNIFASLVDSMGK---AGRLDTSMKVYMEMQG-----CGH--------RPSAPMYVSL 381 (827)
Q Consensus 327 ~~~~m~~~g~---------~p~~~t~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~~~~~l 381 (827)
+...+..... +.+...+..+...+.. .|++++|...|+++.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111111 1124445555555554 7889999999988887 311 1234577788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 461 (827)
...+...|++++|...++++.+.... ..++..+...|...|++++|...++++.+... .+..+|..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 88888999999999999998886543 77888888889999999999999998887543 2667888888899999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 462 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
++|...|+++.+.. ..+..++..+...+...|++++|...++++.+..+.....+..+...|.+.|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999988742 22456788888888899999999999999888766555678888889999999999999998887
Q ss_pred hCCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003353 542 SSGIR-TN----NFIVRQLFESCMK---NALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSAT 613 (827)
Q Consensus 542 ~~~~~-p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~ 613 (827)
+.... ++ ...+..+...|.. .|++++|...++++++..+. +..++..+...|.+.|++++|...++.....
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 53211 11 3367777788888 89999999999998887544 6778888899999999999999988887766
Q ss_pred cCchhHH
Q 003353 614 KHKAHAF 620 (827)
Q Consensus 614 ~~~~~~~ 620 (827)
.+.....
T Consensus 479 ~~~~~~~ 485 (514)
T 2gw1_A 479 ARTMEEK 485 (514)
T ss_dssp CSSHHHH
T ss_pred ccccHHH
Confidence 6644443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.8e-21 Score=218.73 Aligned_cols=315 Identities=13% Similarity=0.074 Sum_probs=240.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+.+...+..++..+.+.|++++|..+|+++++.. +.+..++..++.+|.+.|++++|...|+++.+.++. +..+|
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 97 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD----PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAAR 97 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHH
Confidence 4567788899999999999999999999998876 778999999999999999999999999999887654 78889
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCH----HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHcCCC
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDG----STYELMI------------PSLAKSGRLDAAIKLFQEMKERNFR 337 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~li------------~~~~~~g~~~~A~~~~~~m~~~g~~ 337 (827)
..+..+|.+.|++++|.+.|+++.+.. |+. .++..++ ..+.+.|++++|.+.++++.+.. +
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 174 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-V 174 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 999999999999999999999998753 433 4555553 34788889999999998888765 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 003353 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI- 416 (827)
Q Consensus 338 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l- 416 (827)
.+..++..++.+|.+.|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|++.|+++.+.... +...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~ 252 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYK 252 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHH
Confidence 677888888888999999999999998887654 456788888888888899999999999888865432 34444433
Q ss_pred -----------HHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CH
Q 003353 417 -----------IESHAKSGKLDIAMSIFTDMERAGFLPT----PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GL 480 (827)
Q Consensus 417 -----------i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~ 480 (827)
...|.+.|++++|...|+++.+.... + ...|..+...+.+.|++++|+..++++.+. .| +.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~ 329 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccH
Confidence 66677777777777777777764321 2 346667777777777777777777777663 33 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHH
Q 003353 481 STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVL 521 (827)
Q Consensus 481 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li 521 (827)
.+|..+..+|...|++++|.+.++++++..+.....+..+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 67777777777777777777777777775544434444443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.7e-21 Score=217.41 Aligned_cols=328 Identities=16% Similarity=0.090 Sum_probs=257.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 003353 215 GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYE 294 (827)
Q Consensus 215 ~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~ 294 (827)
.+...+.++.... +.+..++..++..|.+.|++++|..+|+++.+..+. +..+|..+..+|...|++++|++.|+
T Consensus 10 ~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 10 GVDLGTENLYFQS----MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccccccc----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444455555554 778889999999999999999999999999876543 78999999999999999999999999
Q ss_pred HhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHH------------HHHHhcCCHHHH
Q 003353 295 SMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF---NIFASLV------------DSMGKAGRLDTS 359 (827)
Q Consensus 295 ~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~li------------~~~~~~g~~~~A 359 (827)
++.+.+ +.+..++..+..+|.+.|++++|.+.|+++.+.+ +.+. .++..++ ..+.+.|++++|
T Consensus 85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 998864 2367889999999999999999999999999865 3344 5665554 448889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 360 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
...|+++.+.. +.+..++..+..+|.+.|++++|++.|+++.+... .+..++..+...|...|++++|...|+++.+.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988764 45778889999999999999999999999887643 36788899999999999999999999998865
Q ss_pred CCCCCHHHHHHH------------HHHHHHcCCHhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHH
Q 003353 440 GFLPTPSTYSCL------------LEMHASSGQVDSAMKLYNSMTSAGLRPG-----LSTYTALLTLLAKRKLVDVAAKI 502 (827)
Q Consensus 440 g~~p~~~t~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~li~~~~~~g~~~~A~~l 502 (827)
... +...+..+ ...|.+.|++++|...|+++.+ +.|+ ...+..+...+.+.|++++|.+.
T Consensus 241 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 241 DQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 332 44455444 7888889999999999999887 4455 34677788888899999999999
Q ss_pred HHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHH
Q 003353 503 LLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN-NFIVRQLF 556 (827)
Q Consensus 503 ~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 556 (827)
++++++..+.....+..+..+|.+.|++++|...|+++.+. .|+ ...+..+.
T Consensus 318 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 99988876555567888888999999999999999998864 444 34444443
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.4e-21 Score=219.27 Aligned_cols=442 Identities=9% Similarity=-0.059 Sum_probs=321.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...+......+.+.|++++|+..|+++++.. |+..+|..+..+|.+.|++++|...|+++.+.++. +..+|..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHH
Confidence 4567778888999999999999999999875 37889999999999999999999999999887654 77889999
Q ss_pred HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 356 (827)
..+|.+.|++++|+..|+++...+. ++......++..+.+......+.+.+..+...+..|+...+..-..........
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999999887652 344455555555555444444444444333332222222111111111111111
Q ss_pred HHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCCC--------CCHH
Q 003353 357 DTSMKVYMEMQGCGH---------RPSAPMYVSLIESYAK---AGKLDTALRLWDEMRI-----AGFR--------PNFG 411 (827)
Q Consensus 357 ~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~--------pd~~ 411 (827)
.....+...+..... +.+...+......+.. .|++++|+.+|+++.+ ..-. .+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111111111111111 1124455555555554 8999999999999988 3111 2356
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003353 412 LFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLA 491 (827)
Q Consensus 412 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 491 (827)
++..+...+...|++++|...++++.+.... ..++..+...|...|++++|...++++.+.. ..+..++..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 7788889999999999999999999987543 8889999999999999999999999999842 235678888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 492 KRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPL 571 (827)
Q Consensus 492 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 571 (827)
..|++++|...++++.+..+.....+..+...|.+.|++++|...++++.+... .+...+..+...|.+.|++++|...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999998777667888999999999999999999999987542 2456777888899999999999999
Q ss_pred HHHHHHCCCCC-C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHh
Q 003353 572 LETYVESAAKV-D----LVLYTSVLAHLVR---CQDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFF 643 (827)
Q Consensus 572 ~~~m~~~g~~p-d----~~t~~~ll~a~~~---~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 643 (827)
++++.+..+.. + ...+..+...|.+ .|++++|...++.+....+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~---------------------------- 446 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP---------------------------- 446 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT----------------------------
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc----------------------------
Confidence 99998754432 2 4488899999999 9999999988876543211
Q ss_pred hccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 644 HGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 644 ~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
+ ....+..++.+|.+.|+.++|...++++.+..+
T Consensus 447 -----~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 447 -----R-----SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp -----T-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred -----c-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 0 112345899999999999999999999998765
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.4e-19 Score=208.21 Aligned_cols=428 Identities=11% Similarity=0.035 Sum_probs=304.5
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK 247 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~ 247 (827)
+..+...|++++|++.|+.+.+.. +.++.+|..+..++.+.|++++|++.|+++++.. +.+..++..+..+|.+
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK----PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHH
Confidence 555666777888888888777765 5567777777788888888888888888877776 6777777778888888
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC------CccCCHHHHHHHHHHHHHcCCH
Q 003353 248 ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG------ECSLDGSTYELMIPSLAKSGRL 321 (827)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~li~~~~~~g~~ 321 (827)
.|++++|...|+.+ ... |+ ..+..+..+...+...+|...++++... ...|+... +..+....+.
T Consensus 106 ~g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~ 176 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFFGIFDS 176 (537)
T ss_dssp HTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHHHTSCH
T ss_pred cCCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHHHhcCh
Confidence 88888888877533 221 22 2222344555555667777777777543 12233322 3334445555
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHH
Q 003353 322 DAAIKLFQEMKERNFRPSFN-IFASLVDSMGK--------AGRLDTSMKVYMEMQGCGHRPS-------APMYVSLIESY 385 (827)
Q Consensus 322 ~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~ 385 (827)
+.+...+...... .+... ....+...+.. .|++++|..+++++.+.. +.+ ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHH
Confidence 5544433332221 11111 22233322222 257899999999998764 223 33577777888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 003353 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465 (827)
Q Consensus 386 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 465 (827)
...|++++|.+.++++.+.. |+..++..+...|...|++++|.+.++++.+.... +..+|..+...|...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 89999999999999998864 55788888999999999999999999999876533 6888999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 003353 466 KLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSG 544 (827)
Q Consensus 466 ~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 544 (827)
..|+++.+. .| +...+..+...+...|++++|.+.++++.+..+.....+..+...|.+.|++++|.+.|+++.+..
T Consensus 331 ~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999884 34 456888899999999999999999999999876666688889999999999999999999987532
Q ss_pred -----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 545 -----IRTNNFIVRQLFESCMKN----------ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAI 609 (827)
Q Consensus 545 -----~~p~~~~~~~ll~~~~~~----------g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 609 (827)
.......+..+...+... |++++|+..|+++++..+. +...+..+...|.+.|++++|...++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111222344445567777 9999999999999987654 678899999999999999999999988
Q ss_pred HhhccCchhH
Q 003353 610 LSATKHKAHA 619 (827)
Q Consensus 610 l~~~~~~~~~ 619 (827)
.....+....
T Consensus 488 al~~~~~~~~ 497 (537)
T 3fp2_A 488 SAILARTMDE 497 (537)
T ss_dssp HHHHC--CHH
T ss_pred HHHhCCCcHH
Confidence 7765554333
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=9.9e-20 Score=209.44 Aligned_cols=426 Identities=9% Similarity=-0.024 Sum_probs=318.1
Q ss_pred HHHHHHHHHHHcCCCCccHHHHhhhCCCCCCHHH----HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 003353 133 SAVAKIVEVVNRWKWGPELETQLDKLQFVPKMVH----ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLN 208 (827)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~p~~~~----~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~ 208 (827)
.....+...+....+..++...-..+...|+... .+.++...|++++|++.|+.+.... +.+..++..+..++.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 3456667777777888887777666666665433 4666778899999999999999875 567889999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC------CCCCHHHHHHHHHHHHH
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD------CKIDTQSYNVLMTLFLN 282 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~n~li~~~~~ 282 (827)
+.|++++|...|+ ..... +. .....+..+...+...+|...++.+.... ..|+. ..+..+..
T Consensus 105 ~~g~~~~A~~~~~-~~~~~----~~---~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLN----GD---FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHTCHHHHHHHHH-HHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HcCCHHHHHHHHH-HHhcC----CC---CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 9999999999996 44332 21 12223456666777789999999986542 12333 33445556
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHH-HHHHHHHH--------HcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHH
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTY-ELMIPSLA--------KSGRLDAAIKLFQEMKERNFRPSF-------NIFASL 346 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~-~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~l 346 (827)
..+.+.+...+...... .+....+ ..+...+. ..|++++|..+++++.+.. +.+. .++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYT 249 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHH
Confidence 67777776665554432 2332222 22222221 2357899999999998765 3332 356777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003353 347 VDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKL 426 (827)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~ 426 (827)
...+...|++++|...++++.+. .|+..+|..+...+...|++++|.+.++++.+.... +..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCH
Confidence 78888999999999999999986 456888999999999999999999999999887543 678899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 427 DIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506 (827)
Q Consensus 427 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 506 (827)
++|.+.++++.+.... +...|..+...|...|++++|...++++.+.. ..+...+..+...+...|++++|.+.++++
T Consensus 327 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999986533 56789999999999999999999999998842 234568888999999999999999999999
Q ss_pred HHCCCCchH------hHHHHHHHHHHc----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 507 KTMGYSVDV------SASDVLMVYIKD----------GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKP 570 (827)
Q Consensus 507 ~~~g~~~~~------~~~~li~~y~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 570 (827)
++..+.... .+..+...|.+. |++++|...|+++.+... .+...+..+...|.+.|++++|.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHH
Confidence 875432221 244556778888 999999999999987542 356788889999999999999999
Q ss_pred HHHHHHHCCCC
Q 003353 571 LLETYVESAAK 581 (827)
Q Consensus 571 ~~~~m~~~g~~ 581 (827)
.|++.++..+.
T Consensus 484 ~~~~al~~~~~ 494 (537)
T 3fp2_A 484 LFEDSAILART 494 (537)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhCCC
Confidence 99999987655
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=7.9e-18 Score=182.03 Aligned_cols=314 Identities=15% Similarity=0.077 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
++..+..+...+.+.|++++|...|+++++.. +.+..++..+...+...|++++|...|+++.+..+. +...|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD----PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHH
Confidence 34567777788888888888888888888776 677788888888888888888888888888776543 6677888
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCcc--CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECS--LDGSTYELM------------IPSLAKSGRLDAAIKLFQEMKERNFRPSFN 341 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~t~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 341 (827)
+...+...|++++|.+.|++..+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+..
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 155 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE 155 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence 888888888888888888888765320 133333333 456666777777777777776654 45566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHA 421 (827)
Q Consensus 342 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 421 (827)
++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~--- 230 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ--- 230 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH---
Confidence 66677777777777777777777776654 345666666777777777777777777766654322 2222211100
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCH
Q 003353 422 KSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGL-----STYTALLTLLAKRKLV 496 (827)
Q Consensus 422 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~li~~~~~~g~~ 496 (827)
+. .......+...+.+.|++++|...++++.+. .|+. ..+..+...+.+.|++
T Consensus 231 --------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 231 --------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp --------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred --------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCH
Confidence 00 0001112234455555555555555555542 2221 1223344455555555
Q ss_pred HHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 497 DVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 497 ~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
++|.+.++++.+..+.....+..+...|.+.|++++|.+.|+++.+
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555554433334555555555555666666665555554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=2.1e-17 Score=178.68 Aligned_cols=331 Identities=15% Similarity=0.051 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
+..+..+...+.+.|++++|...|+++.+..+. +..+|..+...+...|++++|++.|+++.+.. +-+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 455666777777777777777777777665443 56677777777777777777777777776542 1245666667777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 315 LAKSGRLDAAIKLFQEMKERNFR---PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 391 (827)
+...|++++|.+.++++.+.. + .+...+..+...+. ...+..+...+...|++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777766543 2 22333333311100 01122234566667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003353 392 DTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 392 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 471 (827)
++|++.++++.+... .+...+..+...+...|++++|...++++.+... .+..++..+...|...|++++|...|++.
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777666543 2556666667777777777777777777665432 35666777777777777777777777777
Q ss_pred HHCCCCCC-HHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH----hHHHHHHHHHHcCCHHHHH
Q 003353 472 TSAGLRPG-LSTY------------TALLTLLAKRKLVDVAAKILLEMKTMGYSVDV----SASDVLMVYIKDGSVDHAL 534 (827)
Q Consensus 472 ~~~g~~pd-~~t~------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~----~~~~li~~y~~~g~~~~A~ 534 (827)
.+. .|+ ...+ ..+...+.+.|++++|...++++.+..+.... .+..+...|.+.|++++|.
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 663 333 2222 23366788999999999999999987665442 3456788999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003353 535 RWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597 (827)
Q Consensus 535 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 597 (827)
..++++.+.. +.+..++..+...|.+.|++++|.+.|+++++..+. +...+..+..+....
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHH
Confidence 9999999753 235778888999999999999999999999987655 566777777666543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=3.3e-15 Score=170.06 Aligned_cols=366 Identities=11% Similarity=0.052 Sum_probs=294.3
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCH
Q 003353 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNE----SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK----ADKL 251 (827)
Q Consensus 180 Al~~f~~~~~~~~~~p~~~~~~~li~~l~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 251 (827)
++..+..+.. ..++.++..+...|.. .+++++|...|++..+.+ +..++..|...|.. .+++
T Consensus 26 ~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~ 95 (490)
T 2xm6_A 26 NLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQDY 95 (490)
T ss_dssp CHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCH
Confidence 3555555555 2467888888888887 889999999999988765 47788889999988 8899
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH----cCCHHH
Q 003353 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN----KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK----SGRLDA 323 (827)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~ 323 (827)
++|...|++..+.| +...+..|...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++
T Consensus 96 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 96 AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999988854 67788888888888 788999999999988765 56778888888887 788999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 003353 324 AIKLFQEMKERNFRPSFNIFASLVDSMGK----AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----AGKLDTAL 395 (827)
Q Consensus 324 A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 395 (827)
|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 170 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 170 AREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999988875 56788888888887 889999999999988764 66778888888876 78899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHhHHHH
Q 003353 396 RLWDEMRIAGFRPNFGLFTMIIESHAK----SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS-----GQVDSAMK 466 (827)
Q Consensus 396 ~l~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~ 466 (827)
+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|... ++.++|+.
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 9999888764 55667777777777 788999999999888764 566777788888887 88999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCchHhHHHHHHHHHH----cCCHHHHHHHHHH
Q 003353 467 LYNSMTSAGLRPGLSTYTALLTLLAKRK---LVDVAAKILLEMKTMGYSVDVSASDVLMVYIK----DGSVDHALRWLRF 539 (827)
Q Consensus 467 l~~~m~~~g~~pd~~t~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~----~g~~~~A~~~~~~ 539 (827)
.|++..+.| +...+..+...|...| +.++|.+.+++..+.+ ....+..+...|.. .+++++|..+|++
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 999888854 4566777777777656 7888999999888864 34567788888888 7899999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC
Q 003353 540 MGSSGIRTNNFIVRQLFESCMK----NALYESAKPLLETYVESAAK 581 (827)
Q Consensus 540 m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~ 581 (827)
..+.+ +...+..|...|.+ .++.++|...|++..+.++.
T Consensus 393 A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 393 AAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 88866 45666677777777 78899999999998887754
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=8.9e-16 Score=176.57 Aligned_cols=418 Identities=10% Similarity=0.042 Sum_probs=307.7
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 184 FRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 184 f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
|+.+.+.+ +-+...|..++. +.+.|++++|..+|+++++.. |.+...|...+..+.+.|++++|..+|++..+
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~----P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF----PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34444443 567889999988 478899999999999999886 88999999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHH-HHHcCChhHHHH----HHHHhHhC-CccC-CHHHHHHHHHHHHH---------cCCHHHHHHH
Q 003353 264 SDCKIDTQSYNVLMTL-FLNKGLPYKAFE----IYESMEKG-ECSL-DGSTYELMIPSLAK---------SGRLDAAIKL 327 (827)
Q Consensus 264 ~g~~p~~~~~n~li~~-~~~~g~~~~A~~----~~~~m~~~-g~~p-d~~t~~~li~~~~~---------~g~~~~A~~~ 327 (827)
.. |++..|...+.. ....|+.++|.+ +|++.... |..| +...|...+....+ .|+++.|..+
T Consensus 75 ~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 75 KV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp TC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred cC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 64 688888887753 345677777665 77766542 5443 45677777776654 6889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------hCC---CCCC--------HHH
Q 003353 328 FQEMKERNFRPSFNIFASLVDSM-------------GKAGRLDTSMKVYMEMQ------GCG---HRPS--------APM 377 (827)
Q Consensus 328 ~~~m~~~g~~p~~~t~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~ 377 (827)
|++..+.........|....... .+.++++.|..++.++. +.. +.|+ ...
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 99998732111123444332211 13456777877777632 211 2343 246
Q ss_pred HHHHHHHHHHc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHH
Q 003353 378 YVSLIESYAKA----GKL----DTALRLWDEMRIAGFRPNFGLFTMIIESHAK-------SGKLD-------IAMSIFTD 435 (827)
Q Consensus 378 ~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~-------~g~~~-------~A~~~~~~ 435 (827)
|...+...... ++. ++|..+|++...... -+...|...+..+.+ .|+++ +|..+|++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 66655443332 232 477888998887633 367888888887775 69987 89999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 436 MERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-L-STYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 436 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
..+.-.+.+...|..++..+.+.|++++|..+|+++++ +.|+ . ..|...+..+.+.|++++|.++|+++++.....
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence 88632233688999999999999999999999999998 4565 2 478888888889999999999999999864432
Q ss_pred hHhHHHHHH-HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C--CHHHHHH
Q 003353 514 DVSASDVLM-VYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK-V--DLVLYTS 589 (827)
Q Consensus 514 ~~~~~~li~-~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p--d~~t~~~ 589 (827)
...+...+. .+...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++.++.++. | ....|..
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 223332222 2446899999999999998753 224678888888888999999999999999987543 2 3568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcc
Q 003353 590 VLAHLVRCQDEQNERHLMAILSATK 614 (827)
Q Consensus 590 ll~a~~~~g~~~~a~~l~~~l~~~~ 614 (827)
.+......|+.+.+..+.+++....
T Consensus 469 ~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888889999999999888765543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.2e-14 Score=165.38 Aligned_cols=365 Identities=12% Similarity=0.035 Sum_probs=312.1
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH----cCChh
Q 003353 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK----ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN----KGLPY 287 (827)
Q Consensus 216 A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~----~g~~~ 287 (827)
+...+....+. .+..++..+...|.. .+++++|...|++..+.| +...+..|...|.. .++++
T Consensus 26 ~~~~~~~~a~~------g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 26 NLEQLKQKAES------GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 34555555443 468888889999998 899999999999998863 77889999999999 89999
Q ss_pred HHHHHHHHhHhCCccCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 003353 288 KAFEIYESMEKGECSLDGSTYELMIPSLAK----SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK----AGRLDTS 359 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A 359 (827)
+|++.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 97 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 97 QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998875 67788888888988 889999999999999876 46788888888887 7899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 003353 360 MKVYMEMQGCGHRPSAPMYVSLIESYAK----AGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAK----SGKLDIAMS 431 (827)
Q Consensus 360 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~ 431 (827)
.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999865 78889999999988 899999999999998875 66788888888886 889999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHH
Q 003353 432 IFTDMERAGFLPTPSTYSCLLEMHAS----SGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR-----KLVDVAAKI 502 (827)
Q Consensus 432 ~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-----g~~~~A~~l 502 (827)
.|++..+.| +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... +++++|...
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 999998864 66778888888888 899999999999998754 566777788888887 899999999
Q ss_pred HHHHHHCCCCchHhHHHHHHHHHHcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 003353 503 LLEMKTMGYSVDVSASDVLMVYIKDG---SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK----NALYESAKPLLETY 575 (827)
Q Consensus 503 ~~~m~~~g~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m 575 (827)
+++..+.+ +...+..+...|.+.| +.++|+++|++..+.| +...+..+...|.. .+++++|+..|++.
T Consensus 319 ~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 319 YTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999875 3457788888888866 8899999999999875 56677778788888 89999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccC
Q 003353 576 VESAAKVDLVLYTSVLAHLVR----CQDEQNERHLMAILSATKH 615 (827)
Q Consensus 576 ~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~l~~~l~~~~~ 615 (827)
.+.| +...+..|...|.+ .++.++|...++.....++
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9876 56788888889988 8999999999998777663
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2.3e-15 Score=173.20 Aligned_cols=422 Identities=9% Similarity=0.072 Sum_probs=307.8
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 220 FDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
|++.++.. |.+..+|..++. +.+.|++++|..+|+++.+..+. +...|..++..+.+.|++++|.++|++.+..
T Consensus 2 le~al~~~----P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 2 AEKKLEEN----PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHHHHHHC----TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhhHhhhC----CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 45566665 889999999998 58899999999999999987654 7889999999999999999999999999986
Q ss_pred CccCCHHHHHHHHHHH-HHcCCHHHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHH
Q 003353 300 ECSLDGSTYELMIPSL-AKSGRLDAAIK----LFQEMKER-NFR-PSFNIFASLVDSMGK---------AGRLDTSMKVY 363 (827)
Q Consensus 300 g~~pd~~t~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~-p~~~t~~~li~~~~~---------~g~~~~A~~~~ 363 (827)
.|+...|...+... ...|+.++|.+ +|++..+. |.. ++...|...+....+ .|+++.|..+|
T Consensus 76 --~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 --VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 36888887777533 45677777665 77776643 443 356788888877655 78999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHH------HcC---CCCC--------HHHH
Q 003353 364 MEMQGCGHRPSAPMYVSLIESY-------------AKAGKLDTALRLWDEMR------IAG---FRPN--------FGLF 413 (827)
Q Consensus 364 ~~m~~~g~~p~~~~~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~pd--------~~t~ 413 (827)
++.++.........|....... .+.+++++|..+++++. +.. +.|+ ...|
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 9999731111123444332211 12456777887777632 111 2333 2455
Q ss_pred HHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHh-------HHHHHHHHH
Q 003353 414 TMIIESHAKS----GKL----DIAMSIFTDMERAGFLPTPSTYSCLLEMHAS-------SGQVD-------SAMKLYNSM 471 (827)
Q Consensus 414 ~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-------~g~~~-------~A~~l~~~m 471 (827)
...+...... ++. ++|..+|++..... +-+...|..++..+.+ .|+++ +|..+|++.
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 5555433222 232 37788899888753 2378888888888876 68876 899999999
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-hHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 003353 472 TSAGLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549 (827)
Q Consensus 472 ~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~ 549 (827)
.+. +.| +...|..++..+.+.|++++|.++|+++++..+.. ...|..++..+.+.|++++|.++|++..+.... +.
T Consensus 313 l~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~ 390 (530)
T 2ooe_A 313 IST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RH 390 (530)
T ss_dssp TTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CT
T ss_pred HHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-ch
Confidence 863 245 47788999999999999999999999999976543 247888888888999999999999999875322 22
Q ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCchhHHHhhhccCC
Q 003353 550 FIVRQLFE-SCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKAHAFLCGLFTGP 628 (827)
Q Consensus 550 ~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~ 628 (827)
..+..... .+...|+.++|..+|++.++..+. +...|..++..+.+.|+.++|+.+++......+
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~------------- 456 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS------------- 456 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC-------------
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC-------------
Confidence 22222211 234689999999999999887543 688999999999999999999999987654221
Q ss_pred ccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 003353 629 EQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 687 (827)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~ 687 (827)
..|.....+|...+....+.|+.+++..+.+++.+.-+
T Consensus 457 ---------------------~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 457 ---------------------LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp ---------------------SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred ---------------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 01111123566778888889999999999999877653
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=8.2e-17 Score=172.07 Aligned_cols=286 Identities=14% Similarity=0.040 Sum_probs=205.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+.+...+..++..+...|++++|.++|+++.+.. +.+..++..++..+.+.|++++|..+++++.+..+. +...|
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 93 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSW 93 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHH
Confidence 3455567777777888888888888888888776 666677777778888888888888888888776543 66778
Q ss_pred HHHHHHHHHcC-ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 274 NVLMTLFLNKG-LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352 (827)
Q Consensus 274 n~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 352 (827)
..+...+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|.+.++++.+.. +.+..++..+...|..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 88888888888 8888888888887653 2256677788888888888888888888887765 3445667778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcC
Q 003353 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG--------FRPNFGLFTMIIESHAKSG 424 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~pd~~t~~~li~~~~~~g 424 (827)
.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...+++..+.. ...+..++..+...|.+.|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 888888888888887764 3466777778888888888888888887776531 1223456667777777777
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003353 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLL 490 (827)
Q Consensus 425 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~ 490 (827)
++++|...+++..+.... +...|..+...|.+.|++++|.+.|++..+ +.| +...+..+..++
T Consensus 251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHH
Confidence 777777777777665322 556666677777777777777777777665 334 344555555555
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.8e-16 Score=169.42 Aligned_cols=284 Identities=10% Similarity=0.003 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003353 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVD 348 (827)
Q Consensus 269 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 348 (827)
+...+..+...+...|++++|+++|+++.+.. +.+..++..++.++...|++++|..+++++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34445555666666666666666666665542 1233445555566666666666666666666654 344556666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 003353 349 SMGKAG-RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLD 427 (827)
Q Consensus 349 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 427 (827)
.+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|++.++++.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 666666 6666777666666543 234556666666666667777777776666655332 3344555666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 003353 428 IAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG--------LRPGLSTYTALLTLLAKRKLVDVA 499 (827)
Q Consensus 428 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~pd~~t~~~li~~~~~~g~~~~A 499 (827)
+|.+.++++.+... .+..++..+...|...|++++|...++++.+.. ...+..++..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 66666666665432 245666666666667777777777666665421 022245666666666667777777
Q ss_pred HHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 003353 500 AKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT-NNFIVRQLFESC 559 (827)
Q Consensus 500 ~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~ 559 (827)
.+.++++.+..+.....+..+...|.+.|++++|.+.|+++.+.. | +...+..+..++
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHH
Confidence 777766666554444556666666666666666666666665432 3 334444444444
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=4.3e-17 Score=177.56 Aligned_cols=289 Identities=13% Similarity=0.047 Sum_probs=160.3
Q ss_pred ccCChhHHHH-HHHHHHhCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC
Q 003353 173 VINDSDTSLS-LFRWAKRQSWYVP--GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD 249 (827)
Q Consensus 173 ~~~~~~~Al~-~f~~~~~~~~~~p--~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g 249 (827)
.+++++.|+. .|+.+.....-.| +...+..+...+.+.|++++|...|+++++.. +.+..++..+...|.+.|
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD----PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCc
Confidence 3466777776 6765554332122 23456677778888888888888888888776 677788888888888888
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHH---------------HHHH
Q 003353 250 KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL---------------MIPS 314 (827)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~---------------li~~ 314 (827)
++++|...|+++.+..+. +..+|..+...|...|++++|++.|+++...... +...+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 888888888888776543 6777888888888888888888888887764321 1111111 1222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 315 LAKSGRLDAAIKLFQEMKERNFRP-SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 393 (827)
+...|++++|.+.++++.+..... +..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 225555555555555555443110 34555555555555555555555555555432 2234455555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHHcCCHhH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLP----------TPSTYSCLLEMHASSGQVDS 463 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~t~~~li~~~~~~g~~~~ 463 (827)
|++.|+++.+... .+..++..+..+|.+.|++++|...|+++.+..... ...+|..+..+|...|+.++
T Consensus 270 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 5555555544321 134445555555555555555555555544321110 13444444444555555444
Q ss_pred HHHHHH
Q 003353 464 AMKLYN 469 (827)
Q Consensus 464 A~~l~~ 469 (827)
|..++.
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 444443
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=1e-16 Score=174.46 Aligned_cols=286 Identities=13% Similarity=0.014 Sum_probs=145.0
Q ss_pred cCChhHHHH-HHHHhHhCCcc-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 283 KGLPYKAFE-IYESMEKGECS-L--DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 283 ~g~~~~A~~-~~~~m~~~g~~-p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
.|++++|++ .|++....... | +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..+|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 55544432110 1 23345556666666666666666666666654 4455566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhc
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTM---------------IIESHAKS 423 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~---------------li~~~~~~ 423 (827)
|...|+++.+.. +.+..++..+...|...|++++|++.++++.+.... +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666666543 335556666666666666666666666666654321 1111110 12222255
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003353 424 GKLDIAMSIFTDMERAGFLP-TPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP-GLSTYTALLTLLAKRKLVDVAAK 501 (827)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~ 501 (827)
|++++|...|+++.+..... +..++..+...|.+.|++++|...|+++.+. .| +..++..+...+...|++++|..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 55666666666555432211 3455555555566666666666666555542 22 24455555555555555555555
Q ss_pred HHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC----------CHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 502 ILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT----------NNFIVRQLFESCMKNALYESAKPL 571 (827)
Q Consensus 502 l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~ll~~~~~~g~~~~A~~~ 571 (827)
.++++++..+.....+..+...|.+.|++++|...|+++.+..... ...+|..+..+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 5555555443333445555555555555555555555554321100 134444455555555555555544
Q ss_pred HH
Q 003353 572 LE 573 (827)
Q Consensus 572 ~~ 573 (827)
++
T Consensus 353 ~~ 354 (368)
T 1fch_A 353 DA 354 (368)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.9e-13 Score=163.40 Aligned_cols=375 Identities=11% Similarity=0.107 Sum_probs=237.4
Q ss_pred HHHHhhhcccccccccCCccccCCCCCccccccCcCCCCCCHHHHHH--HHHHHHcCCCCccHHHHhhhCCCCCCHHHHH
Q 003353 91 EEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAK--IVEVVNRWKWGPELETQLDKLQFVPKMVHIT 168 (827)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~p~~~~~~ 168 (827)
..++.+...|.+. +++..|.+.+..++ +|..-..... +...++. ....+...+.++. ..+...++
T Consensus 990 ~~vKaf~~aglp~-------EaieLLEKivl~~s---~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd-~~d~~eIA 1056 (1630)
T 1xi4_A 990 VTVKAFMTADLPN-------ELIELLEKIVLDNS---VFSEHRNLQNLLILTAIKA--DRTRVMEYINRLD-NYDAPDIA 1056 (1630)
T ss_pred HHHHHHHhCCCHH-------HHHHHHHHHHcCCC---cccccHHHHHHHHHHHHHh--ChhhHHHHHHHhh-hccHHHHH
Confidence 3444555566666 77777777764432 2211111111 1111111 2234555555555 44555677
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc
Q 003353 169 QALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA 248 (827)
Q Consensus 169 ~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~ 248 (827)
.++...+.+++|..+|+.+.. .....+.++. ..+++++|.++.++. .+..+|..+..++.+.
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhC
Confidence 777778888888888876421 1122233322 667778888777743 3467777888888888
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 249 DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328 (827)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 328 (827)
|++++|++.|.+. .|...|..++.++.+.|++++|++.+...++.. ++....+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 8888888888553 366777778888888888888888887766543 33333334777788887777544332
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003353 329 QEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408 (827)
Q Consensus 329 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 408 (827)
+ .++...|..+.+.|...|++++|...|... ..|..+...|++.|++++|.+.+++..
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------
Confidence 1 345566667888888888888888888774 367788888888888888888887662
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 409 NFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488 (827)
Q Consensus 409 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 488 (827)
+..+|..+..+|...|++..|......+.. +...+..++..|.+.|.+++|+.+++..+... +-....|+-+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Iiv-----~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 567777777788888888777776654322 55666678888888888888888887776532 222335555555
Q ss_pred HHHh--cCCHHHHHHHHHHHHHCCCCc-------hHhHHHHHHHHHHcCCHHHHH
Q 003353 489 LLAK--RKLVDVAAKILLEMKTMGYSV-------DVSASDVLMVYIKDGSVDHAL 534 (827)
Q Consensus 489 ~~~~--~g~~~~A~~l~~~m~~~g~~~-------~~~~~~li~~y~~~g~~~~A~ 534 (827)
.+++ -+++.++.++|..-.. +++ ...|..++..|.+.|+++.|.
T Consensus 1323 LyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5554 3455555555553332 211 124677777888888888777
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=4.1e-16 Score=169.91 Aligned_cols=264 Identities=11% Similarity=-0.003 Sum_probs=173.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...|..+...+.+.|++++|...|+++++.. +.+..+|..+...|.+.|++++|+..|+++.+..+. +..+|..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD----PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 34457788888888899999999999888876 778888888888999999999999999888876543 6788888
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLD-----------GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR-PSFNIF 343 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~ 343 (827)
+...|...|++++|++.|+++.+.. |+ ...+..+...+.+.|++++|.+.++++.+.... .+..++
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 8888888888888888888887642 22 122233456666677777777777777665421 156666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423 (827)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 423 (827)
..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|++.|+++.+.... +..++..+..+|.+.
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHC
Confidence 777777777777777777777766543 335666666777777777777777777766664322 356666666666666
Q ss_pred CChhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHHcCCHhHHHHHH
Q 003353 424 GKLDIAMSIFTDMERAGFL-----------PTPSTYSCLLEMHASSGQVDSAMKLY 468 (827)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~-----------p~~~t~~~li~~~~~~g~~~~A~~l~ 468 (827)
|++++|...|+++.+.... .+...|..+..++...|+.+.+..+.
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 6666666666666542110 01344555555555555555444443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=4.8e-16 Score=169.37 Aligned_cols=236 Identities=10% Similarity=0.040 Sum_probs=146.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHH
Q 003353 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312 (827)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 312 (827)
.+...+..+...+.+.|++++|...|+++.+..+. +..+|..+...|...|++++|++.|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34456778888888888888888888888876554 77888888888888888888888888887753 23577888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 003353 313 PSLAKSGRLDAAIKLFQEMKERNFRPS----------FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR-PSAPMYVSL 381 (827)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l 381 (827)
.+|...|++++|.+.++++.+.. +.+ ..++..+...+.+.|++++|...++++.+.... .+..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 88888888888888888887653 111 122233455666666666666666666654311 145566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQV 461 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 461 (827)
...|.+.|++++|++.|+++.+.... +..+|..+..+|.+.|++++|...|+++.+... .+..+|..+...|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 66666666666666666666554322 455555555555555666666655555554321 1345555555555555555
Q ss_pred hHHHHHHHHHHH
Q 003353 462 DSAMKLYNSMTS 473 (827)
Q Consensus 462 ~~A~~l~~~m~~ 473 (827)
++|...|+++.+
T Consensus 298 ~~A~~~~~~al~ 309 (365)
T 4eqf_A 298 REAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=3.7e-17 Score=176.66 Aligned_cols=287 Identities=10% Similarity=0.059 Sum_probs=123.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
+..++...++.++|.++++.. +++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+.
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik---------a~D~~~y~~V~~~ae 72 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK---------ADDPSSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc---------CCCHHHHHHHHHHHH
Confidence 344566778888899988865 2335899999999999999999999854 345668888889999
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
..|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..
T Consensus 73 ~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp --------------------------------------CHHHHTTTTT-------CC----------------CTTTHHH
T ss_pred hCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999977776663 3567788889999999999998887774 2677799999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.|..+ ..|..+++++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+
T Consensus 144 ~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----- 203 (449)
T 1b89_A 144 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI----- 203 (449)
T ss_dssp HHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----
T ss_pred HHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----
Confidence 99876 35888999999999999999999888 27889999999999999999986555432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHCCCCC------
Q 003353 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS--GQVDSAMKLYNSMTSAGLRP------ 478 (827)
Q Consensus 407 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------ 478 (827)
..+..-...++..|.+.|++++|..+++...... +.....|+-|.-+|++- +++.+.++.|..-. .+.|
T Consensus 204 ~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~ 280 (449)
T 1b89_A 204 VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAE 280 (449)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHH
T ss_pred HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHH
Confidence 2233445568888899999999998888877554 34667777777777654 34555555554211 1222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH
Q 003353 479 GLSTYTALLTLLAKRKLVDVAAK 501 (827)
Q Consensus 479 d~~t~~~li~~~~~~g~~~~A~~ 501 (827)
+...|.-+...|.+.++++.|..
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHH
Confidence 34457777777778888887765
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.7e-14 Score=163.00 Aligned_cols=222 Identities=11% Similarity=-0.061 Sum_probs=157.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC-----
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHD-----SSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS----- 264 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 264 (827)
.....|+.+...+...|++++|++.|++.++. +....+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34568899999999999999999999887653 10012456778999999999999999999998877542
Q ss_pred CC--CCCHHHHHHHHHHHHHc--CChhHHHHHHHHhHhCCccC-CHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCC
Q 003353 265 DC--KIDTQSYNVLMTLFLNK--GLPYKAFEIYESMEKGECSL-DGSTYELMIPS---LAKSGRLDAAIKLFQEMKERNF 336 (827)
Q Consensus 265 g~--~p~~~~~n~li~~~~~~--g~~~~A~~~~~~m~~~g~~p-d~~t~~~li~~---~~~~g~~~~A~~~~~~m~~~g~ 336 (827)
+. .....+++.+..++... +++++|++.|++..+.. | +...+..+..+ +...++.++|.+.+++..+.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 10 11356676666666554 46889999999988743 4 34455544444 345677888999998888875
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003353 337 RPSFNIFASLVDSMGK----AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGL 412 (827)
Q Consensus 337 ~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 412 (827)
+.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|.+.|++++|.+.+++..+.... +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 4566667666655554 457788999998887765 456778888999999999999999999998876433 5566
Q ss_pred HHHHHHHHH
Q 003353 413 FTMIIESHA 421 (827)
Q Consensus 413 ~~~li~~~~ 421 (827)
+..+...|.
T Consensus 284 ~~~lg~~y~ 292 (472)
T 4g1t_A 284 HCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655553
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2.1e-15 Score=160.86 Aligned_cols=230 Identities=11% Similarity=-0.000 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+.+.|++++|...|+++.+..+. +..+|..+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 45566666777777777777777777665 666777777777777777777777777777665433 5667777777
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELM--------------IP-SLAKSGRLDAAIKLFQEMKERNFRPSFNIF 343 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 343 (827)
.|...|++++|++.++++.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.+..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 777777777777777777654211 11122111 11 1344455555555555555443 2344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 344 ASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS 423 (827)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 423 (827)
..+...|.+.|++++|.+.++++.+.. +.+..+|..+...+.+.|++++|.+.++++.+... .+..++..+...|.+.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 555555555555555555555554432 22344444555555555555555555555444321 1334444444444444
Q ss_pred CChhHHHHHHHHHH
Q 003353 424 GKLDIAMSIFTDME 437 (827)
Q Consensus 424 g~~~~A~~~~~~m~ 437 (827)
|++++|.+.++++.
T Consensus 254 g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 254 SQYDLAAKQLVRAI 267 (327)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444444
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=191.91 Aligned_cols=118 Identities=10% Similarity=0.195 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003353 305 GSTYELMIPSLAKSGRLDAAIKLFQEMKE---RNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSL 381 (827)
Q Consensus 305 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 381 (827)
..||+++|++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45666666666666666666666655542 355666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 382 IESYAKAGK-LDTALRLWDEMRIAGFRPNFGLFTMIIESHAK 422 (827)
Q Consensus 382 i~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 422 (827)
|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666665 35566666666666666666666666654444
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=2e-16 Score=171.01 Aligned_cols=280 Identities=11% Similarity=0.122 Sum_probs=97.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~ 288 (827)
+.|++++|.+.++++ ++..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++
T Consensus 15 ~~~~ld~A~~fae~~---------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 15 HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHH
Confidence 556666666666654 22346777777777777777777777442 355567777777777777777
Q ss_pred HHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 289 A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
|+..++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 77755555442 3445666667777777777777666663 255567777777777777777777777655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 003353 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTY 448 (827)
Q Consensus 369 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 448 (827)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+. .++.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 24666777777777777777777666 156677777777777777777744433321 233334
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCc-----h--HhHHH
Q 003353 449 SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKR--KLVDVAAKILLEMKTMGYSV-----D--VSASD 519 (827)
Q Consensus 449 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~~-----~--~~~~~ 519 (827)
..++..|.+.|++++|..+++..+... +-....|+-+.-+|++- +++.+..+.|.. +.++++ . ..|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHH
Confidence 456666777777777777777666432 23344555555555542 333334433331 112222 1 13566
Q ss_pred HHHHHHHcCCHHHHHH
Q 003353 520 VLMVYIKDGSVDHALR 535 (827)
Q Consensus 520 li~~y~~~g~~~~A~~ 535 (827)
++..|.+.++++.|..
T Consensus 288 ~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhchHHHHHH
Confidence 6666666666666654
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=4.2e-15 Score=158.48 Aligned_cols=262 Identities=8% Similarity=0.004 Sum_probs=221.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 003353 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244 (827)
Q Consensus 165 ~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~ 244 (827)
...+..+...+++++|+.+|+.+.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~ 98 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALAVS 98 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----cCCHHHHHHHHHH
Confidence 445677778899999999999998875 5678899999999999999999999999999987 8889999999999
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH--------------HH-HHHHcCChhHHHHHHHHhHhCCccCCHHHHH
Q 003353 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL--------------MT-LFLNKGLPYKAFEIYESMEKGECSLDGSTYE 309 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 309 (827)
|...|++++|.+.++++.+..+. +...+..+ .. .+...|++++|.+.++++.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999999886543 33333333 22 3667889999999999998764 33788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 389 (827)
.+...+.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..+...+.+.|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999876 5678899999999999999999999999998764 446889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 390 KLDTALRLWDEMRIAGFRP-----------NFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 390 ~~~~A~~l~~~m~~~g~~p-----------d~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
++++|.+.++++.+..... +..++..+..++.+.|+.++|..++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999998754332 4677888888888888888888887653
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=4.9e-17 Score=188.47 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHh---CCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003353 268 IDTQSYNVLMTLFLNKGLPYKAFEIYESMEK---GECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFA 344 (827)
Q Consensus 268 p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 344 (827)
--..|||+||++|++.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHH
Q 003353 345 SLVDSMGKAGR-LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN------FGLFTMII 417 (827)
Q Consensus 345 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd------~~t~~~li 417 (827)
+||+++|+.|+ .++|.++|++|.+.|+.||.++|++++.++.+. .+++..+++ ..+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999998 478999999999999999999999999877664 334444444 3344444 45556677
Q ss_pred HHHHhcCC
Q 003353 418 ESHAKSGK 425 (827)
Q Consensus 418 ~~~~~~g~ 425 (827)
+.|.+.+.
T Consensus 280 dl~s~d~~ 287 (1134)
T 3spa_A 280 DVYAKDGR 287 (1134)
T ss_dssp HHHCCCSC
T ss_pred HHHccCCC
Confidence 77777653
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=1.9e-12 Score=154.92 Aligned_cols=378 Identities=13% Similarity=0.128 Sum_probs=254.8
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSW-YVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~-~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
.+.+...+++.+|+++++.+...+. |.-+....+.++....+. +..+..+...+.-.. ....+...+.
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----------d~~eIA~Iai 1060 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----------cHHHHHHHHH
Confidence 4445556666666666666664322 223344445555555444 334444444433211 1223566677
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHH
Q 003353 247 KADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIK 326 (827)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~ 326 (827)
..|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|.+
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 7888888888888753 13333344433 5577888888877552 46778888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 327 LFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 327 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.|.+. .|...|..++.+|.+.|++++|.+.+....+.. ++....+.++.+|++.+++++..... +
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 88653 455777788888888888888888888777653 33333335788888888887544332 2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003353 407 RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTAL 486 (827)
Q Consensus 407 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 486 (827)
.++...|..+.+.|...|++++|...|... ..|..+...|.+.|++++|.+.+++. -+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 345666777888888888888888888874 36888888888888888888888876 255788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--CC
Q 003353 487 LTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKN--AL 564 (827)
Q Consensus 487 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~ 564 (827)
..+|...|++..|......+.. .+ ..+..++..|.+.|.+++|+.+++..+... +-...+|+.+...|++. ++
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Iiv---~~-deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIVV---HA-DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhhc---CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHH
Confidence 8888888888888776654221 11 245588889999999999999998887544 33445676666666654 45
Q ss_pred HHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 565 YESAKPLLETYVESAAK------VDLVLYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 565 ~~~A~~~~~~m~~~g~~------pd~~t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
..++.++|..-.. +. -+...|.-+.--|.+.|+++.|...+
T Consensus 1332 lmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1332 MREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5666666654322 22 25678999999999999999987544
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=5.4e-14 Score=158.74 Aligned_cols=390 Identities=14% Similarity=0.013 Sum_probs=244.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCCCC
Q 003353 166 HITQALKVINDSDTSLSLFRWAKRQ-------SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS----KNGISL 234 (827)
Q Consensus 166 ~~~~~l~~~~~~~~Al~~f~~~~~~-------~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~----~~~~~~ 234 (827)
.++.+....|+.++|++.|+.+.+. ...+....+|+.+..+|...|++++|...+++..+... ......
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 3577788899999999999987652 11234567899999999999999999999998876321 111345
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH---HHcCChhHHHHHHHHhHhCCccCCHHHHH
Q 003353 235 FSAYNRVIQYLAKAD--KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF---LNKGLPYKAFEIYESMEKGECSLDGSTYE 309 (827)
Q Consensus 235 ~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 309 (827)
..+++.+..++.+.| ++++|+..|++..+..+. +...+..+..++ ...++.++|++.+++..+.. +.+..++.
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~ 213 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKV 213 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHH
Confidence 678888877777765 699999999999987654 666666666554 44678889999999887753 23566666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003353 310 LMIPSLAK----SGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESY 385 (827)
Q Consensus 310 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 385 (827)
.+...+.. .|++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.. +.+..++..+..+|
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 66655554 467889999999998876 6678889999999999999999999999998764 34667777777666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 003353 386 AKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAM 465 (827)
Q Consensus 386 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 465 (827)
...+....+.. ...........+..++|...++...+.... +..++..+...|...|++++|.
T Consensus 292 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 292 RAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHH
Confidence 43221111000 000011111223456777777777665332 4456777778888888888888
Q ss_pred HHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 466 KLYNSMTSAGLRPGLS--TYTALLT-LLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 466 ~l~~~m~~~g~~pd~~--t~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
..|++.++....+... .+..+.. .....|+.++|++.|.+.++..+..... .+..+.+.+++++..+
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~----------~~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK----------EKMKDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH----------HHHHHHHHHHHHHHHH
Confidence 8888887743222211 1222222 2346788888888888888765443211 1112334445555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHH
Q 003353 543 SGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK-VDLVLY 587 (827)
Q Consensus 543 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~ 587 (827)
.+ +.+..++..+...|...|++++|++.|++.++.+.. |+..+|
T Consensus 425 ~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 425 KN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 33 224557777777888888888888888888876654 444443
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=3.2e-14 Score=149.79 Aligned_cols=248 Identities=11% Similarity=0.115 Sum_probs=115.2
Q ss_pred HcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003353 282 NKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMK 361 (827)
Q Consensus 282 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 361 (827)
..|++.+|+..+++...............+.++|...|++++|...++. . -+|+..++..+...+...|+.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3455555555554443321111112333444555555555555543322 1 13344444555555555555555555
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003353 362 VYMEMQGCGHRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440 (827)
Q Consensus 362 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 440 (827)
.++++...+..| +...+..+...+.+.|++++|++.+++ ..+...+..++..|.+.|++++|.+.++++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 555554443222 333344444555555555555555544 2344455555555555555555555555555432
Q ss_pred CCCCHHHH---HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhH
Q 003353 441 FLPTPSTY---SCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA 517 (827)
Q Consensus 441 ~~p~~~t~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 517 (827)
|+.... ...+..+...|++++|..+|+++.+. ...+...++.+..++.+.|++++|++.++++++..+....++
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 221100 11122222335555555555555553 122444555555555555555555555555555444433455
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHhh
Q 003353 518 SDVLMVYIKDGSVDH-ALRWLRFMGS 542 (827)
Q Consensus 518 ~~li~~y~~~g~~~~-A~~~~~~m~~ 542 (827)
..++..+...|+.++ +.++++++.+
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555555555543 3455555543
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=4.2e-14 Score=148.89 Aligned_cols=254 Identities=15% Similarity=0.084 Sum_probs=149.0
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHH
Q 003353 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~ 323 (827)
-....|+++.|+..++......+.........+.++|...|++++|+..++.. -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 34455666666666655543322211234444556666666666666544331 23455566666666666666666
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 324 AIKLFQEMKERNFRP-SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 324 A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
|.+.++++...+..| +...+..+...|...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666554323 444555555666666666666666665 3455666666666777777777777777666
Q ss_pred HcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-
Q 003353 403 IAGFRPNFGLF---TMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP- 478 (827)
Q Consensus 403 ~~g~~pd~~t~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p- 478 (827)
+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|++.++. .|
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~ 232 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSG 232 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 653 332111 112233334466777777777776652 336666777777777777777777777776663 34
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCC
Q 003353 479 GLSTYTALLTLLAKRKLVDV-AAKILLEMKTMGYS 512 (827)
Q Consensus 479 d~~t~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~ 512 (827)
+..++..++..+...|+.++ +.++++++++..+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 45566666666666776654 45666776665443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.1e-12 Score=134.29 Aligned_cols=224 Identities=13% Similarity=0.043 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCcc--CC----HHHHH
Q 003353 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS--LD----GSTYE 309 (827)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd----~~t~~ 309 (827)
..+..+...+.+.|++++|...|++..+.. .+..+|..+..+|...|++++|++.+++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445555556666666666666666655544 45555666666666666666666666655442111 11 34555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG 389 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 389 (827)
.+...+.+.|++++|.+.++++.+.. |+. ..+.+.|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 55556666666666666666655532 221 23444455566666666555432 123345555555555566
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 003353 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYN 469 (827)
Q Consensus 390 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~ 469 (827)
++++|++.+++..+.... +..++..+...|.+.|++++|...+++..+... .+..+|..+...|.+.|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666555554322 445555555555555555555555555554322 134555555555555555555555555
Q ss_pred HHHH
Q 003353 470 SMTS 473 (827)
Q Consensus 470 ~m~~ 473 (827)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=2.6e-13 Score=136.25 Aligned_cols=198 Identities=16% Similarity=0.088 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+++...+..+...+.+.|++++|...|++.++.. |.+..++..+...+.+.|++++|+..|++..+..+. +...|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN----PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHH
Confidence 3455667777777777777777777777777766 777777777777777777777777777777766543 66677
Q ss_pred HHHHHHHHHc-----------CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003353 274 NVLMTLFLNK-----------GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNI 342 (827)
Q Consensus 274 n~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 342 (827)
..+...+... |++++|++.|++..+... -+...+..+..++...|++++|.+.|+++.+.+ .+...
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 153 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHH
Confidence 7777777666 555555555555544321 134444455555555555555555555555444 34445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDE 400 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 400 (827)
+..+..+|...|++++|...|++..+.. +.+...+..+...+.+.|++++|++.+++
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555555554432 22344444444555555555555544443
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.3e-12 Score=133.69 Aligned_cols=221 Identities=10% Similarity=0.042 Sum_probs=103.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CC----HHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL--PT----PSTYSCL 451 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~t~~~l 451 (827)
|..+...+...|++++|++.|++..+.. .+..++..+..+|...|++++|.+.+++..+.... ++ ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 33344444444444444444444444444332110 01 2444444
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVD 531 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~ 531 (827)
...|...|++++|...|+++.+ +.|+. ..+.+.|++++|.+.++++....+.....+..+...|...|+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 4455555555555555555444 22332 22333444555555555555533222234445555555555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003353 532 HALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILS 611 (827)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~ 611 (827)
+|...++++.+... .+..++..+...|.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|...++...
T Consensus 157 ~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555554321 13444555555555555555555555555554332 44555555555555555555555555443
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=5.1e-12 Score=129.28 Aligned_cols=202 Identities=12% Similarity=0.027 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...|..+...+...|++++|.+.|+++++.. +.+..++..+...|.+.|++++|.+.|+++.+..+. +...|..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID----PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHH
Confidence 4577888888889999999999999988876 777888888999999999999999999988876543 77888888
Q ss_pred HHHHHHcCChhHHHHHHHHhHhCCccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKGECSL-DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
...|...|++++|.+.|+++.+.+..| +...+..+...+.+.|++++|.+.++++.+.. +.+..++..+...|...|+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence 888889999999999998887733334 45677778888888888888888888888765 4567788888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 356 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 405 (827)
+++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888887754 3566777788888888888888888888887754
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=2.4e-12 Score=140.32 Aligned_cols=230 Identities=10% Similarity=0.108 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK-LEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
..+|..+...+.+.|++++|++.++++++.. +.+..+|+.+..++.+.|+ +++|+..|+++.+..+. +...|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~----P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 3456666666677777777777777777666 6667777777777777775 77777777777766554 6667777
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK-AG 354 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g 354 (827)
+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|++.++++++.+ +-+...|+.+..++.+ .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Confidence 777777777777777777777664322 55667777777777777777777777777665 4556667777777666 44
Q ss_pred CHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---
Q 003353 355 RLDTS-----MKVYMEMQGCGHRPSAPMYVSLIESYAKAG--KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG--- 424 (827)
Q Consensus 355 ~~~~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g--- 424 (827)
..++| +..|++.++.. +-+...|+.+...+.+.| ++++|++.+.++ +. -..+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 44555 35666665543 234556666666666655 466666666665 22 2224555666666666543
Q ss_pred ------ChhHHHHHHHHH
Q 003353 425 ------KLDIAMSIFTDM 436 (827)
Q Consensus 425 ------~~~~A~~~~~~m 436 (827)
.+++|.++|+++
T Consensus 327 ~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 327 CDNKEDILNKALELCEIL 344 (382)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 235666666665
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=1e-12 Score=131.77 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
|++...+..+...+.+.|++++|...|++..+..+. +...|..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 455566667777777777777777777777765543 66677777777777777777777777776643 1245566666
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003353 312 IPSLAKS-----------GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVS 380 (827)
Q Consensus 312 i~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 380 (827)
..++.+. |++++|...+++..+.. +.+...+..+..+|...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 66666666666655543 3344555555555556666666666665555544 35555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 381 LIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 381 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
+..+|...|++++|+..|++..+.... +...+..+...+.+.|++++|...|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555665555555555554322 3445555555555555555555555443
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=1e-11 Score=124.06 Aligned_cols=203 Identities=10% Similarity=-0.006 Sum_probs=141.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...|..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|.+.|+++.+..+. +..+|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 81 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD----PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 45567777777778888888888888877765 666777777777888888888888888777765433 6667777
Q ss_pred HHHHHHHc-CChhHHHHHHHHhHhCCccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 276 LMTLFLNK-GLPYKAFEIYESMEKGECSLD-GSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 276 li~~~~~~-g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
+...+... |++++|.+.++++.+.+..|+ ...+..+..++.+.|++++|.+.++++.+.. +.+...+..+...+.+.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 77777777 777777777777776322232 4566667777777777777777777776654 34566677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
|++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777665432145556666666666777777777777666543
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=4.4e-13 Score=138.99 Aligned_cols=247 Identities=11% Similarity=-0.029 Sum_probs=173.1
Q ss_pred cCChhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 174 INDSDTSLSLFRWAKRQSWY--VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL 251 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~--~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (827)
.+++++|+..|+.+.+.... +.+..+|..+...+...|++++|...|+++++.. +.+..++..+...|...|++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHccCH
Confidence 46778888888888875321 1245678888888888999999999999988876 77888888899999999999
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 252 EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEM 331 (827)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 331 (827)
++|...|++..+..+. +..+|..+...|...|++++|.+.|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999888876543 6778888888888888888888888888774 345445555555667778888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003353 332 KERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR---PSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408 (827)
Q Consensus 332 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 408 (827)
.... +++...+. ++..+...++.++|...+.+..+.... .+..+|..+...|.+.|++++|...|++..+.. |
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7654 34444443 666677777778888888777643211 014566677777777777777777777776643 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH
Q 003353 409 NFGLFTMIIESHAKSGKLDIAMSIF 433 (827)
Q Consensus 409 d~~t~~~li~~~~~~g~~~~A~~~~ 433 (827)
+. +.....++...|++++|.+.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 21 122234555566666665554
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=5.6e-12 Score=137.48 Aligned_cols=242 Identities=12% Similarity=0.127 Sum_probs=206.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRD-FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~ 245 (827)
...++...+++++|++.|+.+.+.+ +-+..+|+.+..++.+.|+ +++|+..|+++++.. +.+..+|+.+..++
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~----P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
Confidence 3666778899999999999999976 5678899999999999997 999999999999988 88999999999999
Q ss_pred HHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH-cCCHHHH
Q 003353 246 AKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK-SGRLDAA 324 (827)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~-~g~~~~A 324 (827)
.+.|++++|+..|+++.+..+. +..+|..+..++.+.|++++|++.|+++++.... +...|+.+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999988765 8999999999999999999999999999986433 78899999999999 6665887
Q ss_pred -----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------
Q 003353 325 -----IKLFQEMKERNFRPSFNIFASLVDSMGKAG--RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG-------- 389 (827)
Q Consensus 325 -----~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-------- 389 (827)
.+.++++++.. +-+...|+.+..++.+.| ++++|.+.+.++ +.. +.+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchH
Confidence 58899998876 567889999999999988 689999999988 433 456788999999998874
Q ss_pred -CHHHHHHHHHHH-HHcCCCCC-HHHHHHHHHHHH
Q 003353 390 -KLDTALRLWDEM-RIAGFRPN-FGLFTMIIESHA 421 (827)
Q Consensus 390 -~~~~A~~l~~~m-~~~g~~pd-~~t~~~li~~~~ 421 (827)
..++|+++++++ .+. .|+ ...|..+...+.
T Consensus 332 ~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 359999999998 554 333 445555555443
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=3.6e-12 Score=131.98 Aligned_cols=27 Identities=4% Similarity=-0.042 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
+|..+...|.+.|++++|.+.|++..+
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444445555555555555555555554
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=1.1e-09 Score=127.26 Aligned_cols=429 Identities=8% Similarity=0.024 Sum_probs=301.2
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC---HHHHHH
Q 003353 180 SLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK---LEMSYC 256 (827)
Q Consensus 180 Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 256 (827)
.+..|+.....+ +-|..+|..++..+.+.+.++.+..+|+.++... |.+...|..-+..-.+.|. ++.+..
T Consensus 51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f----P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF----PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 455666666655 5799999999999999999999999999999986 8899999999999999999 999999
Q ss_pred HHHHhHhCCC-CCCHHHHHHHHHHHHHcCCh--------hHHHHHHHHhHh-CCc-cCC-HHHHHHHHHHHH--------
Q 003353 257 CFKKVLDSDC-KIDTQSYNVLMTLFLNKGLP--------YKAFEIYESMEK-GEC-SLD-GSTYELMIPSLA-------- 316 (827)
Q Consensus 257 ~~~~m~~~g~-~p~~~~~n~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~pd-~~t~~~li~~~~-------- 316 (827)
+|++.....+ .|++..|...+.-..+.+.. +.+.++|+.... .|. .++ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999987642 37888999888766655543 334578877654 365 454 467777776543
Q ss_pred -HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCCC--------
Q 003353 317 -KSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK-------------AGRLDTSMKVYMEMQG--CGHR-------- 372 (827)
Q Consensus 317 -~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-------------~g~~~~A~~~~~~m~~--~g~~-------- 372 (827)
..++++.+.++|++++......-..+|......--. ..+++.|...+.++.. .++.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 344578899999998853222222344322211111 1234445555555332 1111
Q ss_pred -------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003353 373 -------P-----S---APMYVSLIESYAKAG-------KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAM 430 (827)
Q Consensus 373 -------p-----~---~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~ 430 (827)
| + ...|...+..--..+ ..+.+..+|++....- .-+...|-..+.-+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 1 235555554433322 1344567788887753 336788888888888899999996
Q ss_pred -HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC---------CCCC------------HHHHHHHHH
Q 003353 431 -SIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAG---------LRPG------------LSTYTALLT 488 (827)
Q Consensus 431 -~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~pd------------~~t~~~li~ 488 (827)
++|++.... .+.+...|-..+....+.|++++|.++|+++++.. -.|+ ...|...+.
T Consensus 364 r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 999998864 34467778888999999999999999999988631 0142 236777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCchHhHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 489 LLAKRKLVDVAAKILLEMKTM-GYSVDVSASDVLMVYIKD-GSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYE 566 (827)
Q Consensus 489 ~~~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 566 (827)
...+.|..+.|..+|..+++. +......|...+..-.+. ++.+.|.++|+...+. ..-+...+...+.-....|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 888889999999999999986 322223333333333344 4589999999999875 3335556667777777889999
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCch
Q 003353 567 SAKPLLETYVESAAKV--DLVLYTSVLAHLVRCQDEQNERHLMAILSATKHKA 617 (827)
Q Consensus 567 ~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~~~ 617 (827)
.|..+|++.++....+ ....|...+.--.+.|+.+.+..+.+++....|+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999998876532 45688888888889999999999999887766543
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=7.6e-11 Score=122.38 Aligned_cols=223 Identities=13% Similarity=0.063 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCCCCCHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK----ADKLEMSYCCFKKVLDSDCKIDTQ 271 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 271 (827)
++.++..+...+.+.|++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 44556666666666666666666666666532 34555666666666 666666666666666543 555
Q ss_pred HHHHHHHHHHH----cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003353 272 SYNVLMTLFLN----KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAK----SGRLDAAIKLFQEMKERNFRPSFNIF 343 (827)
Q Consensus 272 ~~n~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 343 (827)
++..+...|.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|.+.+++..+.+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 66666666666 666666666666665543 45555666666666 666666666666666544 33455
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003353 344 ASLVDSMGK----AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----AGKLDTALRLWDEMRIAGFRPNFGLFTM 415 (827)
Q Consensus 344 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 415 (827)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 555555555 566666666666655543 34455555555555 566666666666555543 2344455
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHc
Q 003353 416 IIESHAK----SGKLDIAMSIFTDMERA 439 (827)
Q Consensus 416 li~~~~~----~g~~~~A~~~~~~m~~~ 439 (827)
+...|.+ .+++++|.+.|++..+.
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555555 55555555555555544
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=8e-12 Score=129.33 Aligned_cols=129 Identities=12% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCC--CHHHHHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI--DTQSYNVLM 277 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~n~li 277 (827)
+......+.+.|++++|+..|+++++.. +.+..++..+...|.+.|++++|...|++..+.+..+ ...+|..+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK----YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT----CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3334444444555555555555544443 3333444444444444444444444444444421111 112244444
Q ss_pred HHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE 333 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 333 (827)
..+...|++++|++.|++..+... .+..++..+...+...|++++|.+.++++.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 444444444444444444443211 1223344444444444444444444444433
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=5.3e-13 Score=138.40 Aligned_cols=188 Identities=10% Similarity=-0.026 Sum_probs=100.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~ 288 (827)
..|++++|+..|+++.+....+.+.+..++..+...|...|++++|...|+++.+..+. +..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 34666777777777766531111234556666666677777777777777666655433 56666666666666666666
Q ss_pred HHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 289 A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
|++.|++..+.. +.+..++..+..++.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666665532 1234555555666666666666666666655543 2222222233333444555555555544443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 369 CGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 369 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
.. +++...+. ++..+...++.++|++.+++..
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHC
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHh
Confidence 32 22222222 3334444444455555444443
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=8.2e-11 Score=122.14 Aligned_cols=222 Identities=9% Similarity=-0.048 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 341 NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----AGKLDTALRLWDEMRIAGFRPNFGLFTMI 416 (827)
Q Consensus 341 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 416 (827)
.++..+...|...|++++|...|++..+. .+..++..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34444445555555555555555555442 233444445555555 555555555555555443 44444455
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 417 IESHAK----SGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHAS----SGQVDSAMKLYNSMTSAGLRPGLSTYTALLT 488 (827)
Q Consensus 417 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 488 (827)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555 555555555555555442 44455555555555 555555555555555533 3344444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003353 489 LLAK----RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK----DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM 560 (827)
Q Consensus 489 ~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 560 (827)
.|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+. ...+..+...|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence 5554 555555555555555542 22344455555555 5566666666655555431 333444444555
Q ss_pred H----cCCHHHHHHHHHHHHHCC
Q 003353 561 K----NALYESAKPLLETYVESA 579 (827)
Q Consensus 561 ~----~g~~~~A~~~~~~m~~~g 579 (827)
+ .|++++|.+.|++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 5 556666666666655544
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=1.9e-12 Score=145.28 Aligned_cols=344 Identities=11% Similarity=0.028 Sum_probs=201.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL---EMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 203 li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
+...+.+.|++++|.++|++..+.+ +..++..|...|...|+. ++|...|++..+. +...+..|...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT------CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 4555667777777877777776654 233444566666666666 7777777777653 44556666664
Q ss_pred HHHcC-----ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 280 FLNKG-----LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD---AAIKLFQEMKERNFRPSFNIFASLVDSMG 351 (827)
Q Consensus 280 ~~~~g-----~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 351 (827)
+...+ ++++|++.|++..+.|.. ..+..|...|...+..+ ++.+.+....+.|. ...+..|...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 44444 567778788777776533 25555666666555433 34444444444442 345666777777
Q ss_pred hcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 003353 352 KAGRLDTSMK----VYMEMQGCGHRPSAPMYVSLIESYAKAG---KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKS- 423 (827)
Q Consensus 352 ~~g~~~~A~~----~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~- 423 (827)
..+.++++.. ++..... .+...+..+...|.+.| +.++|++.|++..+.|.. +...+..+...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGG
T ss_pred cCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC
Confidence 7774444333 3333332 22236777777777788 788888888888777643 555445566666544
Q ss_pred ---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 003353 424 ---GKLDIAMSIFTDMERAGFLPTPSTYSCLLEM-H--ASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK--- 494 (827)
Q Consensus 424 ---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g--- 494 (827)
+++++|.+.|++.. .| +...+..|... | ...++.++|+..|++..+.| +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 67888888888776 32 55566666665 3 45778888888888888765 5666666666666 44
Q ss_pred --CHHHHHHHHHHHHHCCCCchHhHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCC
Q 003353 495 --LVDVAAKILLEMKTMGYSVDVSASDVLMVYIK----DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCMK----NAL 564 (827)
Q Consensus 495 --~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~ 564 (827)
++++|.+.|++.. .| .......|..+|.. ..+.++|..+|++..+.|.. + ....|...|.. ..+
T Consensus 300 ~~d~~~A~~~~~~Aa-~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR--EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN-S--ADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT--CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT-T--HHHHHHHHHHSCTTBCCC
T ss_pred CCCHHHHHHHHHHHh-CC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH-H--HHHHHHHHHHhCCCCCCC
Confidence 8888888888777 22 23456666666665 34888888888888877642 2 23334344442 347
Q ss_pred HHHHHHHHHHHHHCCCC
Q 003353 565 YESAKPLLETYVESAAK 581 (827)
Q Consensus 565 ~~~A~~~~~~m~~~g~~ 581 (827)
.++|..+|++..+.|..
T Consensus 374 ~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHCCCH
Confidence 88888888888877754
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=2.5e-12 Score=130.52 Aligned_cols=201 Identities=15% Similarity=0.172 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
....|..+...+.+.|++++|...|+++++.. +.+..++..+...|.+.|++++|...|+++.+..+. +..+|..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 96 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN----KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYG 96 (243)
T ss_dssp --------------------CCTTHHHHHTTC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHH
Confidence 34466666777777777777777777777655 666777777777777777777777777777665433 5666777
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+.+.|+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence 7777777777777777777766542 2245566666666666777777777776666554 3455566666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 356 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
+++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666666665543 234555666666666666666666666666554
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=2.3e-11 Score=121.47 Aligned_cols=199 Identities=13% Similarity=-0.000 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG 351 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 351 (827)
.|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444444444444444443321 1123344444444444444444444444444432 233444444555555
Q ss_pred hc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003353 352 KA-GRLDTSMKVYMEMQGCGHRPS-APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429 (827)
Q Consensus 352 ~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 429 (827)
.. |++++|...++++.+.+..|+ ...+..+...+.+.|++++|++.++++.+.... +...+..+...+.+.|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 55 555555555555544111121 334444555555555555555555555443221 344445555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 430 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555554432212444444444555555555555555555543
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=2e-11 Score=124.73 Aligned_cols=199 Identities=9% Similarity=0.004 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 350 (827)
..|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344455555555555555555555554432 1234455555555555555555555555555443 23444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003353 351 GKAGRLDTSMKVYMEMQGCGHRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIA 429 (827)
Q Consensus 351 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 429 (827)
...|++++|.+.++++.+.+..| +...+..+...+.+.|++++|.+.++++.+.... +...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555421122 2344455555555555555555555555543321 344455555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 430 MSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 430 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
...++++.+... .+...+..+...+...|+.++|.+.++++.+
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555544321 2344444555555555555555555555544
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=4e-12 Score=142.67 Aligned_cols=347 Identities=13% Similarity=0.084 Sum_probs=241.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF---DGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~---~~A~~l~~~m~~~~~~~~~~~~~~~~~li~ 243 (827)
+...+...+++++|++.|+.+.+.. ++.++..+...+...|+. ++|...|++.... +..++..|..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------~~~A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-------SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC-----------------------------------CHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------CHHHHHHHHH
Confidence 4566667789999999999988753 344566666777777888 8999999988743 4667777777
Q ss_pred HHHHcC-----CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHhHhCCccCCHHHHHHHHHHH
Q 003353 244 YLAKAD-----KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK---AFEIYESMEKGECSLDGSTYELMIPSL 315 (827)
Q Consensus 244 ~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~---A~~~~~~m~~~g~~pd~~t~~~li~~~ 315 (827)
.+...+ ++++|...|++..+.|.. ..+..|...|...+..++ +.+.+......| +......+...|
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y 151 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLY 151 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHH
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 666655 789999999999987643 377778888887665444 555555555444 455677788888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG---RLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA---- 388 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 388 (827)
...+.++++........+.-...+...+..|...|.+.| +.++|++.|++..+.| .++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 888866555554333333222333348889999999999 9999999999999988 56777667777777655
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----C
Q 003353 389 GKLDTALRLWDEMRIAGFRPNFGLFTMIIES-H--AKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSG-----Q 460 (827)
Q Consensus 389 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-----~ 460 (827)
+++++|++.|++.. .| +...+..+... | ...+++++|.+.|++..+.| +...+..|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 79999999999987 43 55666667666 4 46899999999999999876 7788888888887 55 9
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHH----cCCHHH
Q 003353 461 VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAK----RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIK----DGSVDH 532 (827)
Q Consensus 461 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~----~g~~~~ 532 (827)
+++|+..|++.. . -+...+..|...|.. ..+.++|...|+...+.|. ......|..+|.. ..+.++
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCCCCCCHHH
Confidence 999999999887 3 356677777777766 4499999999999998765 3356677777764 468999
Q ss_pred HHHHHHHHhhCCC
Q 003353 533 ALRWLRFMGSSGI 545 (827)
Q Consensus 533 A~~~~~~m~~~~~ 545 (827)
|..+|+...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999888773
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=6.2e-12 Score=127.56 Aligned_cols=200 Identities=12% Similarity=0.058 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHH
Q 003353 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIP 313 (827)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 313 (827)
...+|..+...+.+.|++++|...|+++.+..+. +...|..+...+...|++++|++.|++..+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3445555666666666666666666666654432 55566666666666666666666666665432 124455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003353 314 SLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT 393 (827)
Q Consensus 314 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 393 (827)
.+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666655543 3344555555555555555555555555555432 2244455555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 394 ALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 394 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
|++.++++.+... .+..++..+...|.+.|++++|.+.++++.+
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5555555544322 1344455555555555555555555555544
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=6.6e-09 Score=120.83 Aligned_cols=435 Identities=11% Similarity=0.072 Sum_probs=295.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC---hhH
Q 003353 212 DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL---PYK 288 (827)
Q Consensus 212 ~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~---~~~ 288 (827)
..++.+..|++.+..+ +.|..+|..++..+.+.+.++.+..+|+++...-+ .....|...+..-.+.+. .+.
T Consensus 47 ~~~d~i~~lE~~l~~n----p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ----PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp CCSCHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHH
T ss_pred CCHHHHHHHHHHHHHC----cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHH
Confidence 3455566677777777 89999999999999999999999999999998644 478889999988888888 999
Q ss_pred HHHHHHHhHhCC-ccCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH-----
Q 003353 289 AFEIYESMEKGE-CSLDGSTYELMIPSLAKSGRL--------DAAIKLFQEMKE-RNF-RP-SFNIFASLVDSMG----- 351 (827)
Q Consensus 289 A~~~~~~m~~~g-~~pd~~t~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p-~~~t~~~li~~~~----- 351 (827)
+.++|++..... ..|++..|...+.-..+.++. +.+.++|+.+.. .|. .+ +...|...+....
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 999999998863 247888998888776665554 345578887664 355 44 4578888887654
Q ss_pred ----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHH----------HHcCCHHHHHHHHHHHHHc--CCC-----
Q 003353 352 ----KAGRLDTSMKVYMEMQGCGHRPSAPMYVSL---IESY----------AKAGKLDTALRLWDEMRIA--GFR----- 407 (827)
Q Consensus 352 ----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---i~~~----------~~~g~~~~A~~l~~~m~~~--g~~----- 407 (827)
..++++.+.++|++++......-..+|... ...+ -...+++.|...+.++... ++.
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 234578899999999853222122344322 1111 0112344555556554321 211
Q ss_pred ----------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 003353 408 ----------P-----N---FGLFTMIIESHAKSG-------KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVD 462 (827)
Q Consensus 408 ----------p-----d---~~t~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 462 (827)
| + ...|...+.---..+ ..+.+..+|++.+.. +.-+...|-..+.-+.+.|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHH
Confidence 1 1 133444444322222 123456678887765 2337788888888888889988
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------Cc-----------h--HhHHH
Q 003353 463 SAM-KLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGY---------SV-----------D--VSASD 519 (827)
Q Consensus 463 ~A~-~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~~-----------~--~~~~~ 519 (827)
+|. ++|++.... ++.+...|...+....+.|+++.|.++|+.++.... .| + ..|..
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 996 999998873 333555677778888889999999999999886420 02 1 24666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003353 520 VLMVYIKDGSVDHALRWLRFMGSS-GIRTNNFIVRQLFESCMKN-ALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRC 597 (827)
Q Consensus 520 li~~y~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 597 (827)
.+....+.|..+.|..+|.++.+. +..+ ..+|...+..-.+. ++.+.|..+|+..++. ..-+...|...++-....
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~-~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVT-PDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSC-THHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 667777889999999999999876 3222 22232222222233 4589999999999887 333677778888888888
Q ss_pred CCHHHHHHHHHHHhhccCchhHHHhhhccCCccccchhHHHHHHHhhccccccccCcchhhHHHHHHHHHHcCChhHHHH
Q 003353 598 QDEQNERHLMAILSATKHKAHAFLCGLFTGPEQRKQPVLSFVREFFHGIDYELEEGAARYFVNVLLNYLVLMGQINRARC 677 (827)
Q Consensus 598 g~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Li~~l~k~G~~~~A~~ 677 (827)
|+.+.|+.+|+......++ +.....+|...++.-.+.|..+.+..
T Consensus 518 ~~~~~AR~lferal~~~~~-----------------------------------~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISD-----------------------------------SHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSS-----------------------------------TTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC-----------------------------------HHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999876543221 00012356788888889999999999
Q ss_pred HHHHHHHCCCCCC
Q 003353 678 VWKVAYENKLFPK 690 (827)
Q Consensus 678 v~~~~~~~~~~p~ 690 (827)
+.+++.+.-|..+
T Consensus 563 v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 563 LEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHSTTCC
T ss_pred HHHHHHHhCCCCc
Confidence 9999998876544
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=8.6e-12 Score=137.06 Aligned_cols=302 Identities=11% Similarity=-0.014 Sum_probs=160.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CC
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL----FSAYNRVIQYLAKADKLEMSYCCFKKVLDS----DC 266 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~ 266 (827)
.....+......+...|++++|...|+++++.. +.+ ..++..+...|...|++++|...|++..+. +.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 445566667777777888888888888777765 444 346677777777777777777777765431 11
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCcc-CC----HHHHHHHHHHHHHcCC--------------------
Q 003353 267 KI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS-LD----GSTYELMIPSLAKSGR-------------------- 320 (827)
Q Consensus 267 ~p-~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~t~~~li~~~~~~g~-------------------- 320 (827)
.| ...+|..+...|...|++++|+..+++..+.... ++ ..++..+...+...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 11 2345666666777777777777777666542100 11 2355555556666666
Q ss_pred HHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 003353 321 LDAAIKLFQEMKER----NFR-PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTA 394 (827)
Q Consensus 321 ~~~A~~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A 394 (827)
+++|.+.+++..+. +.. ....++..+...|...|++++|...+++..+... .++..
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------ 224 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA------------------ 224 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH------------------
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH------------------
Confidence 55555555544321 100 0112344444444444555555444444432100 00100
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHH
Q 003353 395 LRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PT----PSTYSCLLEMHASSGQVDSAMKLYN 469 (827)
Q Consensus 395 ~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~ 469 (827)
....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...++
T Consensus 225 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 225 -------------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp -------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 00124444555555555555555555554421000 01 3455556666666666666666666
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCch--HhHHHHHHHHHHcCCHH
Q 003353 470 SMTSA----GLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTM----GYSVD--VSASDVLMVYIKDGSVD 531 (827)
Q Consensus 470 ~m~~~----g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~~--~~~~~li~~y~~~g~~~ 531 (827)
+..+. +-.+. ..++..+...|...|++++|.+.+++..+. +..+. .++..+...|...|+..
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 65541 11111 335566666677777777777777766543 22222 24555666666666553
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=6.8e-12 Score=138.57 Aligned_cols=277 Identities=12% Similarity=-0.006 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhC----C-CCC
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF----SAYNRVIQYLAKADKLEMSYCCFKKVLDS----D-CKI 268 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p 268 (827)
..+..+...+...|++++|...|+++++.. +.+. .++..+...|...|++++|...|++..+. + ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 345566777788888888888888888875 4444 46778888888888888888888776542 1 112
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhC----C-ccCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 003353 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKG----E-CSLDGSTYELMIPSLAKSGR-----------------LDAAIK 326 (827)
Q Consensus 269 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g-~~pd~~t~~~li~~~~~~g~-----------------~~~A~~ 326 (827)
...+|..+...|...|++++|.+.+++..+. + ......++..+...|...|+ +++|.+
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 3456777777777888888888877776542 1 11123356666666677777 666666
Q ss_pred HHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003353 327 LFQEMKER----NF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDE 400 (827)
Q Consensus 327 ~~~~m~~~----g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 400 (827)
.+++..+. +- .....++..+...|...|++++|...+++..+... .++..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------ 260 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA------------------------ 260 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH------------------------
Confidence 65554331 10 01122444455555555555555555555442100 00100
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-
Q 003353 401 MRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-----PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA- 474 (827)
Q Consensus 401 m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~- 474 (827)
....++..+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++..+.
T Consensus 261 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 261 -------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp -------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00123444444455555555555555444321000 01344555556666666666666666655441
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 475 ---GLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 475 ---g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
+..+ ...++..+...|...|++++|.+.++++.+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0001 1235556666677777777777777777664
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=9.5e-12 Score=137.39 Aligned_cols=130 Identities=11% Similarity=-0.100 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----ch--H
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGL-RPG----LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS----VD--V 515 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----~~--~ 515 (827)
++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.++++.+.... .. .
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555556666666666666655544100 011 124455555566666666666666655442111 01 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSSG----IRT-NNFIVRQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
.+..+...|...|++++|...+++..+.. ..+ ...++..+...|.+.|++++|...+++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34445555555566666655555544311 000 01233344444445555555555555443
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=1.3e-11 Score=135.61 Aligned_cols=307 Identities=15% Similarity=0.058 Sum_probs=191.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHhHhC----CccC
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID----TQSYNVLMTLFLNKGLPYKAFEIYESMEKG----ECSL 303 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 303 (827)
......+......+.+.|++++|...|++..+.++. + ..+|..+...|...|++++|...+++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445556667777777777777777777777765432 3 345667777777777777777777765432 1111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHH
Q 003353 304 -DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR-PS----FNIFASLVDSMGKAGR-------------LDTSMKVYM 364 (827)
Q Consensus 304 -d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~-------------~~~A~~~~~ 364 (827)
...++..+...+...|++++|...++++.+.... ++ ..++..+...|...|+ .++|...
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~-- 162 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA-- 162 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH--
Confidence 1335555666666666666666666665432100 01 2244444455555555 0000000
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 365 EMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIA----GFRP-NFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 365 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
+++|.+.+++..+. +..+ ...++..+...|...|++++|...+++..+.
T Consensus 163 --------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 163 --------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44444444433221 1001 1345666667777777777777777766532
Q ss_pred CC-CCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003353 440 GF-LPT----PSTYSCLLEMHASSGQVDSAMKLYNSMTSA----GLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKTM 509 (827)
Q Consensus 440 g~-~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (827)
.. .++ ..++..+...|...|++++|...+++..+. +..+. ..++..+...+...|++++|.+.++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 012 347888999999999999999999988752 11111 457888888999999999999999998764
Q ss_pred CC----Cch--HhHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHHcCCHHH
Q 003353 510 GY----SVD--VSASDVLMVYIKDGSVDHALRWLRFMGSS----GIRTN-NFIVRQLFESCMKNALYES 567 (827)
Q Consensus 510 g~----~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~ 567 (827)
.. .+. ..+..+...|.+.|++++|.+.+++..+. +..+. ..++..+...+...|+...
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 22 222 25678888999999999999999987743 22222 4466777778888887754
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=2.2e-11 Score=129.40 Aligned_cols=201 Identities=13% Similarity=0.042 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCC-C
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL----FSAYNRVIQYLAKADKLEMSYCCFKKVLDS----DCK-I 268 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p 268 (827)
..+......+...|++++|...|+++++.. +.+ ..++..+...|...|++++|...+++..+. +.. .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 344555666777788888888888777765 444 356677777777778877777777765432 111 1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCcc-CC----HHHHHHHHHHHHHcCC--------------------HHH
Q 003353 269 DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECS-LD----GSTYELMIPSLAKSGR--------------------LDA 323 (827)
Q Consensus 269 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~t~~~li~~~~~~g~--------------------~~~ 323 (827)
...++..+...|...|++++|.+.+++..+.... ++ ..++..+...+...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 2456666777777777777777777776442100 11 2356666666666666 666
Q ss_pred HHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHH
Q 003353 324 AIKLFQEMKER----NF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPS----APMYVSLIESYAKAGKLDT 393 (827)
Q Consensus 324 A~~~~~~m~~~----g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~ 393 (827)
|.+.+++..+. +. .....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 66666554432 10 01123455555566666666666666655542100 001 1244445555555555555
Q ss_pred HHHHHHHHH
Q 003353 394 ALRLWDEMR 402 (827)
Q Consensus 394 A~~l~~~m~ 402 (827)
|.+.+++..
T Consensus 242 A~~~~~~al 250 (338)
T 3ro2_A 242 ASEYYKKTL 250 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=5.5e-10 Score=118.36 Aligned_cols=216 Identities=9% Similarity=0.088 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHhHh-CCCCCCHHHHHHHHH
Q 003353 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAK-------ADKL-------EMSYCCFKKVLD-SDCKIDTQSYNVLMT 278 (827)
Q Consensus 214 ~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~-~g~~p~~~~~n~li~ 278 (827)
++|..+|++.+... |.+..+|..++..+.. .|++ ++|..+|++..+ ..+. +...|..++.
T Consensus 33 ~~a~~~~~~al~~~----p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 56777777777765 6777777777776653 3554 667777776665 2322 5556666666
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCC
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLD-GS-TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMG-KAGR 355 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd-~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~ 355 (827)
.+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|.++|+++.+.+ +.+...|........ ..|+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC
Confidence 666666777777777666653 232 22 56666666666666666666666666543 233333433322211 2455
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 003353 356 LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG-FRP--NFGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 356 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--d~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
+++|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666665555432 2244555555555555555555555555555532 222 234455555555555555555555
Q ss_pred HHHHHH
Q 003353 433 FTDMER 438 (827)
Q Consensus 433 ~~~m~~ 438 (827)
++++.+
T Consensus 264 ~~~a~~ 269 (308)
T 2ond_A 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=2e-11 Score=129.78 Aligned_cols=131 Identities=11% Similarity=-0.030 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----ch--H
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGL-RPG----LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS----VD--V 515 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----~~--~ 515 (827)
++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|.+.+++..+.... +. .
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 444455555555555555555555543100 011 124445555555666666666666555432111 11 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSSG----IRT-NNFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
.+..+...|...|++++|...++++.+.. -.+ ...++..+...|.+.|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555666666666666665554321 000 122444455555556666666666655554
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=2.8e-10 Score=120.63 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=183.3
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHH-cCCCCCCCCHHHHHHHH
Q 003353 178 DTSLSLFRWAKRQSWYVPGDECYVMLFDVLN-------ESRDF-------DGMLSLFDEMVH-DSSKNGISLFSAYNRVI 242 (827)
Q Consensus 178 ~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~-------~~g~~-------~~A~~l~~~m~~-~~~~~~~~~~~~~~~li 242 (827)
++|+..|+.+.... +.++..|..++..+. +.|++ ++|..+|++.++ .. +.+..+|..++
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~----p~~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL----KKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC----cccHHHHHHHH
Confidence 56889999998864 567889988888776 35886 999999999998 45 77889999999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH-HcCC
Q 003353 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQ-SYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA-KSGR 320 (827)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~-~~g~ 320 (827)
..+.+.|++++|..+|++..+..+. +.. .|..++..+.+.|++++|.++|++..+... .+...|........ ..|+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCC
T ss_pred HHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999986543 343 899999999999999999999999988642 34445544433322 2699
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 003353 321 LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCG-HRP--SAPMYVSLIESYAKAGKLDTALRL 397 (827)
Q Consensus 321 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~l 397 (827)
+++|.++|+++.+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998874 5578899999999999999999999999999863 344 567899999999999999999999
Q ss_pred HHHHHHcC
Q 003353 398 WDEMRIAG 405 (827)
Q Consensus 398 ~~~m~~~g 405 (827)
++++.+..
T Consensus 264 ~~~a~~~~ 271 (308)
T 2ond_A 264 EKRRFTAF 271 (308)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998764
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=1.7e-10 Score=111.84 Aligned_cols=167 Identities=13% Similarity=0.116 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
++..|..+...+.+.|++++|++.|++.++.. |.+..++..+..+|.+.|++++|...++......+. +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHH
Confidence 44566666666666666666666666666665 666666666666666666666666666666654433 5555666
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+...+...++++.|.+.+.+..... +-+...+..+..++.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 6666666666666666666665532 2245556666666666666666666666666554 4455566666666666666
Q ss_pred HHHHHHHHHHHHhC
Q 003353 356 LDTSMKVYMEMQGC 369 (827)
Q Consensus 356 ~~~A~~~~~~m~~~ 369 (827)
+++|.+.|++..+.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666666543
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=6.7e-11 Score=133.54 Aligned_cols=210 Identities=10% Similarity=0.082 Sum_probs=113.1
Q ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDF-DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSY 255 (827)
Q Consensus 177 ~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (827)
.+.|+..++...... +.+...|..+...+...|++ ++|++.|++.++.. +.+..+|..+...|.+.|++++|.
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 334455555444432 34555666666666666666 66666666666654 555666666666666666666666
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHHc---------CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc--------
Q 003353 256 CCFKKVLDSDCKIDTQSYNVLMTLFLNK---------GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS-------- 318 (827)
Q Consensus 256 ~~~~~m~~~g~~p~~~~~n~li~~~~~~---------g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~-------- 318 (827)
+.|++..+.. |+...|..+...|... |++++|++.|++..+.. +-+...|..+..+|...
T Consensus 158 ~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 6666665543 3445555566666555 55555555555555432 11344555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 319 GRLDAAIKLFQEMKERNFR---PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 319 g~~~~A~~~~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 395 (827)
|++++|.+.|+++.+.. + .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|+
T Consensus 235 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555543 2 344555555555555555555555555554432 223344445555555555555554
Q ss_pred HH
Q 003353 396 RL 397 (827)
Q Consensus 396 ~l 397 (827)
+.
T Consensus 313 ~~ 314 (474)
T 4abn_A 313 ES 314 (474)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=6.1e-11 Score=133.87 Aligned_cols=223 Identities=10% Similarity=0.019 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 003353 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL-EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE 291 (827)
Q Consensus 213 ~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~ 291 (827)
++++++.+++..... +.+...+..+...|...|++ ++|++.|++..+..+. +...|..+..+|.+.|++++|++
T Consensus 84 ~~~al~~l~~~~~~~----~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA----QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTTC----CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccC----chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555544433 45566666666666666666 6666666666554432 45566666666666666666666
Q ss_pred HHHHhHhCCccCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 292 IYESMEKGECSLDGSTYELMIPSLAKS---------GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKV 362 (827)
Q Consensus 292 ~~~~m~~~g~~pd~~t~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 362 (827)
.|++..+. .|+...+..+...+... |++++|.+.++++.+.. +.+...|..+..+|...
T Consensus 159 ~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~--------- 226 (474)
T 4abn_A 159 CFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSL--------- 226 (474)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH---------
Confidence 66666553 24445555555555555 55555555555555443 33344444444444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003353 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFR--PNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG 440 (827)
Q Consensus 363 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 440 (827)
....| ...|++++|++.|++..+.... -+...|..+..+|...|++++|.+.|++..+..
T Consensus 227 ---~~~~~---------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 227 ---YFNTG---------------QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp ---HHHTT---------------CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---HHhhc---------------cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 00000 0004455555555555443210 144555555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003353 441 FLPTPSTYSCLLEMHASSGQVDSAMKLYNSM 471 (827)
Q Consensus 441 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 471 (827)
.. +...+..+...+...|++++|++.+.++
T Consensus 289 p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 289 PA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 3445555555555666666666555444
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=4.6e-10 Score=108.68 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHH
Q 003353 233 SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMI 312 (827)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 312 (827)
.+..+|..+...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++|++.+.+...... -+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 45667777888888888888888888877776654 677777777777778888888877777766432 2455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 313 PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLD 392 (827)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 392 (827)
..+...++++.|.+.+.+..+.. +.+..++..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 77777777777777777777664 4556677777777777777777777777777654 345667777777777777777
Q ss_pred HHHHHHHHHHHc
Q 003353 393 TALRLWDEMRIA 404 (827)
Q Consensus 393 ~A~~l~~~m~~~ 404 (827)
+|++.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777776653
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=2.7e-11 Score=127.68 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKER------NF-RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC------GHRP 373 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p 373 (827)
++..+...+...|++++|.+.++++.+. +- +....++..+...|...|++++|.+.++++.+. +..|
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4444444555555555555555544432 11 112334555555566666666666666555432 1111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 374 -SAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 374 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
...++..+...|.+.|++++|.+.++++.+
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223455566666666666666666666554
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.26 E-value=5.9e-10 Score=121.98 Aligned_cols=228 Identities=10% Similarity=0.023 Sum_probs=115.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-----CHHHHH
Q 003353 346 LVDSMGKAGRLDTSMKVYMEMQGC----GHRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF-RP-----NFGLFT 414 (827)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p-----d~~t~~ 414 (827)
....+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|++.+++..+.-. .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444555666666666666666542 1011 124555666666666666666666665543210 01 123455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCC-CHHHHH
Q 003353 415 MIIESHAKSGKLDIAMSIFTDMERAGFL-PT----PSTYSCLLEMHASSGQVDSAMKLYNSMTSA----GLRP-GLSTYT 484 (827)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~ 484 (827)
.+...|...|++++|.+.|++..+.... ++ ..++..+...|...|++++|...+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5556666666666666666655432000 11 134555666666666666666666665541 1212 234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---Cch--HhHHHHHHHHHHcCC---HHHHHHHHHHHhhCCCCCC-HHHHHHH
Q 003353 485 ALLTLLAKRKLVDVAAKILLEMKTMGY---SVD--VSASDVLMVYIKDGS---VDHALRWLRFMGSSGIRTN-NFIVRQL 555 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~---~~~--~~~~~li~~y~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l 555 (827)
.+...+.+.|++++|.+.+++..+... .+. ..+..+...|...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 566666666666666666666554311 111 123344445555555 55555555444 12222 2234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 003353 556 FESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 556 l~~~~~~g~~~~A~~~~~~m~ 576 (827)
...|...|++++|...+++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555556666666666655554
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=3.2e-11 Score=127.13 Aligned_cols=173 Identities=11% Similarity=0.052 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC------C
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS----KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS------D 265 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 265 (827)
...++..+...+...|++++|..+++++.+... .+.+....++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788888999999999999999999887310 001556678888999999999999999999888753 1
Q ss_pred -CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC------Cc-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 003353 266 -CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG------EC-SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER--- 334 (827)
Q Consensus 266 -~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~------g~-~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--- 334 (827)
......+|..+...|...|++++|.+.|++..+. +- +....++..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1224567888899999999999999999988753 11 223457788888999999999999999998764
Q ss_pred ---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003353 335 ---N-FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQG 368 (827)
Q Consensus 335 ---g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (827)
+ .+....++..+...|...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 122345788889999999999999999998875
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=8.2e-10 Score=120.85 Aligned_cols=229 Identities=13% Similarity=0.051 Sum_probs=148.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-----CHHHHH
Q 003353 311 MIPSLAKSGRLDAAIKLFQEMKER----NFRP-SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RP-----SAPMYV 379 (827)
Q Consensus 311 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-----~~~~~~ 379 (827)
....+...|++++|.+.++++.+. +-.+ ...++..+...|...|++++|...+.+..+.-. .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556677777777777776653 1111 234666777777777777777777776654210 01 134667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHH
Q 003353 380 SLIESYAKAGKLDTALRLWDEMRIAGFR-PN----FGLFTMIIESHAKSGKLDIAMSIFTDMERA----GF-LPTPSTYS 449 (827)
Q Consensus 380 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~ 449 (827)
.+...|...|++++|++.+++..+.... ++ ..++..+...|...|++++|.+.+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777777788888888877776542110 11 236667777888888888888888877651 22 23456677
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCC---CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCchH--hHHHH
Q 003353 450 CLLEMHASSGQVDSAMKLYNSMTSAG---LRPG-LSTYTALLTLLAKRKL---VDVAAKILLEMKTMGYSVDV--SASDV 520 (827)
Q Consensus 450 ~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd-~~t~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~~~--~~~~l 520 (827)
.+...|.+.|++++|...+++..+.. -.|. ...+..+...+...|+ +++|..++++. +..+.. .+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 88888888888888888888776521 0111 2234556667777888 66666666554 344442 56678
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 003353 521 LMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 521 i~~y~~~g~~~~A~~~~~~m~~ 542 (827)
...|.+.|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999888764
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=1.2e-08 Score=111.00 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKER----NFR--P-SFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR----PSAPM 377 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~ 377 (827)
..+...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 33444444555555555555444321 111 1 1223334444555555555555555554432110 01233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
+..+...+...|++++|...+++..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555555555544
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=1.1e-08 Score=111.18 Aligned_cols=271 Identities=13% Similarity=0.047 Sum_probs=170.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CC----H
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF----SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-ID----T 270 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~ 270 (827)
+......+...|++++|...+++.+.... ..+. .+++.+...+...|++++|...+++..+.... .+ .
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34445566678888888888888877542 2222 25667777888888888888888876542111 12 2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhC----Ccc--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CC
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKG----ECS--L-DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR----PS 339 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~ 339 (827)
.+++.+...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++..+..-. ..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 33566777888889999998888887542 211 2 2345666778888899999999999888764321 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CH
Q 003353 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP-S-APMYV----SLIESYAKAGKLDTALRLWDEMRIAGFRP---NF 410 (827)
Q Consensus 340 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~-~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~ 410 (827)
..++..+...+...|++++|...+++.......+ + ..... ..+..+...|++++|...+++.......+ ..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 3567778888889999999999998876431111 1 11111 23344668888888888887766533211 12
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 411 GLFTMIIESHAKSGKLDIAMSIFTDMERA----GFLPTP-STYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 411 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
..+..+...+...|++++|...+++.... |..++. .++..+..++...|+.++|...+++...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 24455666677777777777777665432 111111 1344444555556666666665555543
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=2.4e-09 Score=102.85 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMT 278 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~ 278 (827)
.|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...|..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 84 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD----AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC----ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34444444555555555555555544433 344445555555555555555555555554443221 3444444444
Q ss_pred HHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003353 279 LFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT 358 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 358 (827)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 4444444444444444444321 1233344444444444444444444444444332 2233344444444444444444
Q ss_pred HHHHHHHH
Q 003353 359 SMKVYMEM 366 (827)
Q Consensus 359 A~~~~~~m 366 (827)
|.+.++++
T Consensus 163 A~~~~~~~ 170 (186)
T 3as5_A 163 ALPHFKKA 170 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=7.5e-09 Score=112.95 Aligned_cols=226 Identities=12% Similarity=0.013 Sum_probs=118.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CC-CHHHHHH
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNF-RP----SFNIFASLVDSMGKAGRLDTSMKVYMEMQGC----GH-RP-SAPMYVS 380 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p-~~~~~~~ 380 (827)
...+...|++++|...++++.+..- .+ ...++..+...|...|++++|...+++..+. +. .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777764311 01 1345666777777777777777777666531 10 11 1345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 003353 381 LIESYAKAGKLDTALRLWDEMRIA----GFR-PNFGLFTMIIESHAKSGKLDIAMSIFTDMER-----AGFLPTPSTYSC 450 (827)
Q Consensus 381 li~~~~~~g~~~~A~~l~~~m~~~----g~~-pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 450 (827)
+...|...|++++|++.+++..+. +.. ....++..+...|...|++++|.+.+++..+ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 667777777777777777665542 100 0123455566666666666666666666554 2211 2445555
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCchH--hHHHHH
Q 003353 451 LLEMHASSGQVDSAMKLYNSMTSAGL---RPG-LSTYTALLTLLAKRKL---VDVAAKILLEMKTMGYSVDV--SASDVL 521 (827)
Q Consensus 451 li~~~~~~g~~~~A~~l~~~m~~~g~---~pd-~~t~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~~~--~~~~li 521 (827)
+...|.+.|++++|...+++..+..- .|. ...+..+...+...++ +++|...+++ .+..++. .+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHH
Confidence 66666666666666666666554210 111 1233333334444455 4444444433 2222221 333455
Q ss_pred HHHHHcCCHHHHHHHHHHHh
Q 003353 522 MVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 522 ~~y~~~g~~~~A~~~~~~m~ 541 (827)
..|.+.|++++|...|++..
T Consensus 344 ~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555443
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=4.6e-09 Score=100.79 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHH
Q 003353 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315 (827)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~ 315 (827)
..+..+...+...|++++|...|+++.+..+. +..+|..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44555666666666666666666666554332 55566666666666666666666666665532 22455555556666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 395 (827)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666655543 3445555555555666666666666665555443 234455555555555555555555
Q ss_pred HHHHHHHH
Q 003353 396 RLWDEMRI 403 (827)
Q Consensus 396 ~l~~~m~~ 403 (827)
+.+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=1.3e-09 Score=128.12 Aligned_cols=165 Identities=10% Similarity=0.076 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+..+|+.+...+.+.|++++|++.|++.++.. +.+..+|+.+..+|.+.|++++|++.|++..+..+. +..+|+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 45677777777777788888888887777776 677777777777777777777777777777766543 5677777
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+..+|.+.|++++|++.|++.++... -+..+|+.+..+|.+.|++++|.+.|+++.+.. +-+...+..+..+|...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 77777777777777777777766422 245677777777777777777777777777664 4456677777777777777
Q ss_pred HHHHHHHHHHHH
Q 003353 356 LDTSMKVYMEMQ 367 (827)
Q Consensus 356 ~~~A~~~~~~m~ 367 (827)
+++|.+.+++..
T Consensus 161 ~~~A~~~~~kal 172 (723)
T 4gyw_A 161 WTDYDERMKKLV 172 (723)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766655
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.13 E-value=8.9e-09 Score=112.37 Aligned_cols=228 Identities=10% Similarity=-0.050 Sum_probs=130.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CC-CHHHH
Q 003353 345 SLVDSMGKAGRLDTSMKVYMEMQGCGH-RPS----APMYVSLIESYAKAGKLDTALRLWDEMRIAG--F---RP-NFGLF 413 (827)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~---~p-d~~t~ 413 (827)
.....+...|++++|...|++..+... .++ ..++..+...|...|++++|...+++..+.. . .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556678888888888888775311 122 3467777778888888888888887765421 0 11 13456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-----CCCCCCHHHH
Q 003353 414 TMIIESHAKSGKLDIAMSIFTDMERA----GFLP-TPSTYSCLLEMHASSGQVDSAMKLYNSMTS-----AGLRPGLSTY 483 (827)
Q Consensus 414 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~ 483 (827)
+.+...|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|...|++..+ .. .....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 66777777777777777777766542 1110 123556666667777777777777766665 21 1124455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC---ch--HhHHHHHHHHHHcCC---HHHHHHHHHHHhhCCCCCC-HHHHHH
Q 003353 484 TALLTLLAKRKLVDVAAKILLEMKTMGYS---VD--VSASDVLMVYIKDGS---VDHALRWLRFMGSSGIRTN-NFIVRQ 554 (827)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~--~~~~~li~~y~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~ 554 (827)
..+...+.+.|++++|...+++..+.... +. ..+..+...|...|+ +++|+..+++. +..++ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 56666666667777777666666653221 11 123334444555555 55555555542 11222 223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 003353 555 LFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 555 ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
+...|...|++++|...|++..
T Consensus 342 la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555556666666666665554
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=2.5e-09 Score=125.89 Aligned_cols=168 Identities=11% Similarity=0.081 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
|.+..+|+.|...|.+.|++++|++.|++..+..+. +..+|+.+..+|.+.|++++|++.|++.++... -+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 556677888888888888888888888887776544 677788888888888888888888887776432 246677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL 391 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 391 (827)
..++.+.|++++|.+.|+++.+.+ +-+..+|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..+|...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 777777788888888777777765 4556777777777777777777777777777654 23556777777777777777
Q ss_pred HHHHHHHHHHHH
Q 003353 392 DTALRLWDEMRI 403 (827)
Q Consensus 392 ~~A~~l~~~m~~ 403 (827)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.04 E-value=1.6e-08 Score=101.48 Aligned_cols=196 Identities=8% Similarity=-0.013 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
.++..|......+.+.|++++|...|++.++.. + ++..++..+..++.+.|++++|+..|++..+..+. +...|
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 79 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT----NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAY 79 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHH
Confidence 456778888888888888888888888888876 4 77777777888888888888888888888876654 66778
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhCCccCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHH
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKGECSLDG-------STYELMIPSLAKSGRLDAAIKLFQEMKERNFRP--SFNIFA 344 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~ 344 (827)
..+...|...|++++|++.|++..+... .+. ..|..+...+.+.|++++|.+.|+++.+.+ +. +...+.
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~ 157 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHH
Confidence 8888888888888888888888876422 233 457777778888888888888888888764 23 356677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 345 SLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 405 (827)
.+..+|...| ...++++...+ ..+...|.... ....+.+++|+..+++..+..
T Consensus 158 ~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 158 SLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7777775544 34445555443 23444454433 234566888999988888764
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.04 E-value=2.4e-08 Score=100.15 Aligned_cols=207 Identities=8% Similarity=-0.033 Sum_probs=161.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.++..+..+...+.+.|++++|...|++..+..+.++...+..+..++...|++++|++.|++..+.... +..+|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 45678899999999999999999999999998776568888888999999999999999999999886422 56688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSF-------NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS---APMYVSL 381 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l 381 (827)
..++...|++++|.+.+++..+.. +.+. .+|..+...+...|++++|.+.|++..+. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999999875 4455 56888889999999999999999999876 444 5677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCL 451 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 451 (827)
..+|...| ..+++++...+. .+...|.... ....+.+++|...+++..+.... +..+...+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 77776554 344555555432 2444454443 33456789999999999986432 34444333
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=4.3e-09 Score=108.69 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhC------Cc-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-CC
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEKG------EC-SLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER------N-FR 337 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~~------g~-~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~ 337 (827)
+|..+...|...|++++|++.+++..+. +- +....++..+...+...|++++|.+.++++.+. . .+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444444321 00 112234444555555555555555555554432 0 01
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 338 PSFNIFASLVDSMGKAGRLDTSMKVYMEMQGC------GHRP-SAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 338 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
....++..+...|...|++++|...++++.+. +..| ...++..+...|.+.|++++|.+.+++..+
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22345555666666666666666666655542 1011 234566666666666666666666666554
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=3.8e-09 Score=109.07 Aligned_cols=160 Identities=14% Similarity=0.098 Sum_probs=88.8
Q ss_pred cCChhHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCCCCHHHHHHHHH
Q 003353 174 INDSDTSLSLFRWAKRQ------SWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS----KNGISLFSAYNRVIQ 243 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~------~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~----~~~~~~~~~~~~li~ 243 (827)
.++++.|+..|+.+.+. ...+....++..+...+...|++++|...+++++.... .+.+....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555555442 01122345666677777777777777777777665410 011334456666666
Q ss_pred HHHHcCCHHHHHHHHHHhHhCC-----C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC------CccC-CHHHHH
Q 003353 244 YLAKADKLEMSYCCFKKVLDSD-----C--KIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG------ECSL-DGSTYE 309 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g-----~--~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-d~~t~~ 309 (827)
.|...|++++|...|++..+.. . .....+|..+...|...|++++|++.|++..+. +-.| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 7777777777777766665430 0 112445566666666666666666666666542 1011 234555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKE 333 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~ 333 (827)
.+..++.+.|++++|.+.++++.+
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666666666665554
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=5.9e-08 Score=101.74 Aligned_cols=188 Identities=11% Similarity=-0.005 Sum_probs=106.1
Q ss_pred HHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHH
Q 003353 385 YAKAGKLDTALRLWDEMRIA----GFRPN-FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PT----PSTYSCLLEM 454 (827)
Q Consensus 385 ~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~ 454 (827)
|...|++++|.+.|.+..+. |-.++ ..+|+.+..+|.+.|++++|...+++..+.... .+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555444331 11111 234555555555555555555555554431000 01 2356667777
Q ss_pred HHHc-CCHhHHHHHHHHHHHCCCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-------hHHH
Q 003353 455 HASS-GQVDSAMKLYNSMTSAGLRP---G----LSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDV-------SASD 519 (827)
Q Consensus 455 ~~~~-g~~~~A~~l~~~m~~~g~~p---d----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-------~~~~ 519 (827)
|... |++++|+..|++.++. .| + ..++..+...+.+.|++++|...|+++.+..+.... .+..
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 7775 7888887777777652 11 1 245667777778888888888888888776544321 3456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 003353 520 VLMVYIKDGSVDHALRWLRFMGSSGIRTN------NFIVRQLFESCM--KNALYESAKPLLETYV 576 (827)
Q Consensus 520 li~~y~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~--~~g~~~~A~~~~~~m~ 576 (827)
+..+|...|++++|...|++..+. .|+ ...+..++.+|. ..+++++|+..|+++.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 667777888888888888877643 222 112334444443 3455677777766553
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=4.4e-07 Score=94.02 Aligned_cols=178 Identities=15% Similarity=0.095 Sum_probs=95.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF-RPNFGLFTMIIESHAKSGKLDIAMSIFTDME 437 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 437 (827)
|...|++..+.+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 34444445566666666666666666666554442 1244555566666666666666666666665
Q ss_pred HcCCCC-----CHHHHHHHHHHHH--HcC--CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 438 RAGFLP-----TPSTYSCLLEMHA--SSG--QVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 438 ~~g~~p-----~~~t~~~li~~~~--~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
+. .| +..+...|..++. ..| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 23 2344444444422 223 666666666666552 34433333444466666777777766665544
Q ss_pred CC----------CCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 003353 509 MG----------YSVDVSASDVLMVYIKDGSVDHALRWLRFMGSS 543 (827)
Q Consensus 509 ~g----------~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 543 (827)
.. +....+...+|..+...|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 21 1111244455554444555 666666666643
No 89
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=5.9e-07 Score=93.92 Aligned_cols=219 Identities=12% Similarity=0.129 Sum_probs=166.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH----HHc-
Q 003353 176 DSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESR--DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL----AKA- 248 (827)
Q Consensus 176 ~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g--~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~----~~~- 248 (827)
..++|+++++.+...+ +-+..+|+....++...+ ++++++++++.++... |.+..+|+.-...+ .+.
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n----Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN----EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----TTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC----cccHHHHHHHHHHHHHHHHhcc
Confidence 4467999999988876 456778888888888888 9999999999999887 88888888877777 666
Q ss_pred --CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC----
Q 003353 249 --DKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY--KAFEIYESMEKGECSLDGSTYELMIPSLAKSGR---- 320 (827)
Q Consensus 249 --g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~---- 320 (827)
+++++++.+++.+.+..++ |..+|+.-.-.+.+.|.++ ++++.++++++.... |...|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 7888999999999887765 8889988888888888888 888888888876543 77777766666666665
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 321 --LDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDT-SMKVYMEMQGCG--HRPSAPMYVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 321 --~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~ 395 (827)
++++++.+++++..+ +-|...|+-+...+.+.|+..+ +..+..++.+.+ -..+...+..+...|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 778888888887776 5677788777777777776433 444555544322 1235667777777777777777777
Q ss_pred HHHHHHHH
Q 003353 396 RLWDEMRI 403 (827)
Q Consensus 396 ~l~~~m~~ 403 (827)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777765
No 90
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=7.7e-07 Score=93.04 Aligned_cols=223 Identities=8% Similarity=0.028 Sum_probs=155.0
Q ss_pred HhcCC-hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH----
Q 003353 208 NESRD-FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD--KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF---- 280 (827)
Q Consensus 208 ~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~---- 280 (827)
.+.|. .++|+++++.++..+ |.+..+|+.-...+...| +++++++.++.+....++ +..+|+.-...+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n----P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL----ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC----cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHH
Confidence 34444 478999999999998 899999999999999999 999999999999987765 778888766666
Q ss_pred HHc---CChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 281 LNK---GLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD--AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 281 ~~~---g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
... +++++++++++++.+... -|..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|...|+.....+.+.++
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGG
T ss_pred HhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 555 678888888888877543 36777777777777777777 8888888888776 4566777776666666665
Q ss_pred ------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCh
Q 003353 356 ------LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDT-ALRLWDEMRIAG--FRPNFGLFTMIIESHAKSGKL 426 (827)
Q Consensus 356 ------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g--~~pd~~t~~~li~~~~~~g~~ 426 (827)
++++++.+++++... +-|...|+-+...+.+.|+..+ +.++..++.+.+ -..+...+..+.++|.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 666666666666554 3466666666666666665332 333444433322 112455555566666666666
Q ss_pred hHHHHHHHHHHH
Q 003353 427 DIAMSIFTDMER 438 (827)
Q Consensus 427 ~~A~~~~~~m~~ 438 (827)
++|.++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.86 E-value=4.7e-08 Score=102.48 Aligned_cols=207 Identities=12% Similarity=-0.024 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHhHH
Q 003353 390 KLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA----GFLPT-PSTYSCLLEMHASSGQVDSA 464 (827)
Q Consensus 390 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A 464 (827)
++++|...|++. ...|...|++++|.+.|++..+. |-.++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 34577899999999999987653 21111 46889999999999999999
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCc------hHhHHHHHHHHHHcCCHHH
Q 003353 465 MKLYNSMTSA----GLRP-GLSTYTALLTLLAKR-KLVDVAAKILLEMKTMGYSV------DVSASDVLMVYIKDGSVDH 532 (827)
Q Consensus 465 ~~l~~~m~~~----g~~p-d~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~~------~~~~~~li~~y~~~g~~~~ 532 (827)
+..|++.++. |-.. -..++..+...|... |++++|+..+++.++..... ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988762 1111 134788888899996 99999999999998753221 1257788899999999999
Q ss_pred HHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHH--hcCCH
Q 003353 533 ALRWLRFMGSSGIRTNN------FIVRQLFESCMKNALYESAKPLLETYVESAAKV-D---LVLYTSVLAHLV--RCQDE 600 (827)
Q Consensus 533 A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-d---~~t~~~ll~a~~--~~g~~ 600 (827)
|+..|++..+....... ..+..+..++...|++++|+..|++.++..+.. + ...+..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999976543221 156667778889999999999999988754331 1 123455566664 34556
Q ss_pred HHHHHHHHHHh
Q 003353 601 QNERHLMAILS 611 (827)
Q Consensus 601 ~~a~~l~~~l~ 611 (827)
++|...++.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 66666665443
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.84 E-value=1.2e-07 Score=85.18 Aligned_cols=127 Identities=15% Similarity=0.208 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
|..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|...|+++.+.++. +...|..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 78 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC----CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 4444455555555555555555555443 344445555555555555555555555554443321 34444444444
Q ss_pred HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444444444321 1123344444444444444444444444443
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.84 E-value=1.1e-07 Score=93.98 Aligned_cols=95 Identities=14% Similarity=0.202 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHhH
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNR----------------VIQYLAKADKLEMSYCCFKKVL 262 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~ 262 (827)
.+......+.+.|++++|...|++.++.. |.+..+|.. +..+|.+.|++++|+..|++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN----IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455556666666666666666554 444444443 4444444444444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 263 ~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+..+. +...|..+...|...|++++|++.|++.++
T Consensus 82 ~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 82 QKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43322 344444444444444444444444444443
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=1.7e-07 Score=84.20 Aligned_cols=94 Identities=22% Similarity=0.302 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 386 (827)
++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 114 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 33333333333444444444444433332 2223333334444444444444444444433322 122333333444444
Q ss_pred HcCCHHHHHHHHHHHH
Q 003353 387 KAGKLDTALRLWDEMR 402 (827)
Q Consensus 387 ~~g~~~~A~~l~~~m~ 402 (827)
+.|++++|.+.++++.
T Consensus 115 ~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 115 KQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHH
Confidence 4444444444444433
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.82 E-value=1.7e-06 Score=89.67 Aligned_cols=245 Identities=14% Similarity=0.103 Sum_probs=144.9
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHH
Q 003353 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 324 (827)
..-.|.+..++.-...+. ..-....--.+.++|...|++... ..-.|....+..+.. |...+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----C
T ss_pred HHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----H
Confidence 344566666666333222 121222333445667777766531 112233333333333 22222 5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 325 IKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH-RPSAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 325 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
...+++..+.+ .++..+...+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666554 45555666777778888888888888887766542 13556777777888888888888888888876
Q ss_pred cCCCC-----CHHHHHHHHHHHH--hcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 003353 404 AGFRP-----NFGLFTMIIESHA--KSG--KLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSA 474 (827)
Q Consensus 404 ~g~~p-----d~~t~~~li~~~~--~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 474 (827)
. .| +..+...+..++. ..| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 34 2455555555532 234 788888888887654 244333344444777888888888888766542
Q ss_pred -----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 475 -----GL---RP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 475 -----g~---~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
.. .| |..++..+|......|+ +|.+++.++.+..+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 00 13 44566555555555666 7788888888765443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=3.3e-08 Score=116.62 Aligned_cols=174 Identities=9% Similarity=-0.069 Sum_probs=130.0
Q ss_pred HhcCChhHHHHHHHHHH--------HcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 208 NESRDFDGMLSLFDEMV--------HDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
...|++++|++.+++.+ +.. +.+..++..+...|.+.|++++|++.|++..+..+. +...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF----SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC----TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc----ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHH
Confidence 67788888888888887 444 667778888888888888888888888888876544 77788888888
Q ss_pred HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003353 280 FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTS 359 (827)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 359 (827)
|...|++++|++.|++..+... -+...|..+..++.+.|++++ .+.|+++.+.+ +.+...|..+..+|.+.|++++|
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888876532 256677788888888888888 88888888775 55677788888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003353 360 MKVYMEMQGCGHRPSAPMYVSLIESYAKAGK 390 (827)
Q Consensus 360 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 390 (827)
.+.|++..+.+ +.+...|..+..++...++
T Consensus 554 ~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 88888877653 2234566666666655444
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=3.2e-08 Score=116.78 Aligned_cols=174 Identities=12% Similarity=-0.008 Sum_probs=149.2
Q ss_pred HccCChhHHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 003353 172 KVINDSDTSLSLFRWAK--------RQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243 (827)
Q Consensus 172 ~~~~~~~~Al~~f~~~~--------~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~ 243 (827)
...+++++|++.|+.+. ... +.+...+..+...+.+.|++++|++.|+++++.. +.+..+|..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV----GWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----CCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC----cchHHHHHHHHH
Confidence 46789999999999998 543 5567889999999999999999999999999987 889999999999
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHH
Q 003353 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDA 323 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~ 323 (827)
+|.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++ ++.|++..+... -+...|..+..++.+.|++++
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999987654 77899999999999999999 999999987542 367789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 324 AIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 324 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
|.+.|+++.+.+ +.+...+..+..++...++
T Consensus 553 A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 999999998765 3446778788888766555
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.79 E-value=2.2e-07 Score=95.30 Aligned_cols=187 Identities=7% Similarity=0.014 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-C-
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-I- 268 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p- 268 (827)
+.+...+..+...+.+.|++++|...|+++++.. |.+ ..++..+..+|.+.|++++|+..|++..+..+. |
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 4456667777777777777777777777777765 444 667777777777777777777777777765332 1
Q ss_pred CHHHHHHHHHHHHH--------cCChhHHHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003353 269 DTQSYNVLMTLFLN--------KGLPYKAFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS 339 (827)
Q Consensus 269 ~~~~~n~li~~~~~--------~g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 339 (827)
...++..+..++.. .|++++|+..|++.++.. |+. .....+... ..+... -
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~--------------~~~~~~----~ 147 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKI--------------RELRAK----L 147 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHH--------------HHHHHH----H
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHH--------------HHHHHH----H
Confidence 23456666666666 677777777777766542 221 111111000 000000 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHc
Q 003353 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP--SAPMYVSLIESYAKA----------GKLDTALRLWDEMRIA 404 (827)
Q Consensus 340 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~ 404 (827)
...+..+...|.+.|++++|...|+++.+..... ....+..+..+|.+. |++++|...|+++.+.
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 0113445566666666666666666666532111 123455555555544 6666666666666654
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.79 E-value=1.8e-07 Score=95.97 Aligned_cols=181 Identities=7% Similarity=0.006 Sum_probs=129.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPG---DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~---~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~ 243 (827)
.+..+...+++++|+..|+.+.+.. +.+ ..++..+..++.+.|++++|...|++.++... +.+....++..+..
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-IDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-CCchhHHHHHHHHH
Confidence 4666778899999999999999976 334 67899999999999999999999999998751 11344668888999
Q ss_pred HHHH--------cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHH
Q 003353 244 YLAK--------ADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315 (827)
Q Consensus 244 ~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~ 315 (827)
++.+ .|++++|...|+++.+..+. +...+..+... ...... -...+..+...|
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~la~~~ 158 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYEAARLY 158 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHHHHHHH
Confidence 9999 99999999999999886543 32333222111 111000 011245566677
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRP--SFNIFASLVDSMGKA----------GRLDTSMKVYMEMQGC 369 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 369 (827)
.+.|++++|...|+++.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 77888888888888877653211 234666677777655 7778888888887765
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=1.5e-07 Score=93.18 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=129.6
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVM----------------LFDVLNESRDFDGMLSLFDEMVHDSSKNG 231 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~----------------li~~l~~~g~~~~A~~l~~~m~~~~~~~~ 231 (827)
+..+...|++++|+..|+.+.+.. +.+...|.. +..++.+.|++++|...|++.++..
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 84 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---- 84 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----
Confidence 455667899999999999998864 345567777 8999999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHhHhCCccCCHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL--PYKAFEIYESMEKGECSLDGSTYE 309 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~ 309 (827)
|.+..++..+..+|...|++++|...|++..+..+. +..+|..+...|...|. .+.+...++.... ..|....+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 889999999999999999999999999999987765 78899999988876654 3445666665543 223333444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 310 LMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL 346 (827)
Q Consensus 310 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 346 (827)
....++...|++++|...|+++.+. .|+......+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 4555667778889999999888874 4665444433
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.77 E-value=2.4e-05 Score=88.11 Aligned_cols=121 Identities=12% Similarity=0.057 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HhHHHHHHHHHH-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003353 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD-VSASDVLMVYIK-DGSVDHALRWLRFMGSSGIRTNNFIVRQLFESC 559 (827)
Q Consensus 482 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~li~~y~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 559 (827)
.|...+..+.+.+..+.|..+|+.+ +. .... ..|......-.. .++.+.|..+|+...+.-. -+...+...++-.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 3444444444455566666666666 21 1111 122111111111 2246666666666654321 1223333444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 560 MKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAIL 610 (827)
Q Consensus 560 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l 610 (827)
.+.|+.+.|..+|+++. .....|...++-=...|+.+.++.++++.
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55666666666666651 14556666665555566666666655543
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=2.3e-07 Score=89.03 Aligned_cols=161 Identities=10% Similarity=0.068 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 003353 200 YVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL 279 (827)
Q Consensus 200 ~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~ 279 (827)
+..+...+.+.|++++|...|++.++.. |.+..++..+...|.+.|++++|+..|++..+..+ +...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~ 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL----QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH----HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHH
Confidence 4455566667777777777777776665 66677777777777777777777777777665433 33333222111
Q ss_pred -HHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 003353 280 -FLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP-SFNIFASLVDSMGKAGRLD 357 (827)
Q Consensus 280 -~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~ 357 (827)
+...+...+|++.+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 112222334555565555432 1135555566666666666666666666665544221 2345555666666666666
Q ss_pred HHHHHHHHHH
Q 003353 358 TSMKVYMEMQ 367 (827)
Q Consensus 358 ~A~~~~~~m~ 367 (827)
+|...|++..
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666665543
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=3.9e-07 Score=95.15 Aligned_cols=167 Identities=13% Similarity=0.065 Sum_probs=132.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 003353 194 VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSY 273 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (827)
+.+...+..+...+.+.|++++|...|++.++.. |.+..++..+...|.+.|++++|...++++.... |+....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~ 187 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS----NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQ 187 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHH
Confidence 3456677888888999999999999999999887 8889999999999999999999999999987764 344333
Q ss_pred H-HHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 003353 274 N-VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFR-PSFNIFASLVDSMG 351 (827)
Q Consensus 274 n-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~ 351 (827)
. .....+.+.+..++|++.+++..+.. +.+...+..+...+...|++++|.+.+.++.+.... .+...+..++..+.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 2 23334667778888888888887753 236778888888999999999999999998886522 12567888888888
Q ss_pred hcCCHHHHHHHHHHHH
Q 003353 352 KAGRLDTSMKVYMEMQ 367 (827)
Q Consensus 352 ~~g~~~~A~~~~~~m~ 367 (827)
..|+.++|...|++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 8898888888887755
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.69 E-value=6e-08 Score=90.47 Aligned_cols=119 Identities=7% Similarity=0.023 Sum_probs=59.4
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
..++.++|+..++.+...+ +.+...+..+...|.+.|++++|++.|++.++.. |.+..+|..+..+|.+.|+++
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ----ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCchH
Confidence 3344555555555544432 1222334445555555555555555555555554 555555555555555555555
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHhHh
Q 003353 253 MSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEI-YESMEK 298 (827)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~-~~~m~~ 298 (827)
+|+..|++..+..+. +..+|..+...|.+.|++++|.+. +++..+
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555555544332 445555555555555555443333 244443
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=3.2e-07 Score=105.97 Aligned_cols=153 Identities=12% Similarity=-0.039 Sum_probs=86.9
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMS 254 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (827)
++.++|++.|+.+.+.. +.+...|..+...+.+.|++++|.+.+++.++.. +.+..++..+...|.+.|++++|
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH----PGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666666543 3455666666666667777777777777766665 55666666677777777777777
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 003353 255 YCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS---GRLDAAIKLFQEM 331 (827)
Q Consensus 255 ~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~---g~~~~A~~~~~~m 331 (827)
.+.|++..+..+. +...|..+..+|.+.|++++|.+.|++..+... .+...+..+..++... |+.++|.+.++++
T Consensus 77 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 77 AVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7777666655433 556666666666666666666666666655421 2455666666666666 6666666666666
Q ss_pred HHcC
Q 003353 332 KERN 335 (827)
Q Consensus 332 ~~~g 335 (827)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 6554
No 106
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=7.8e-06 Score=86.35 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=76.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc-C-C
Q 003353 174 INDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESR-DFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA-D-K 250 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~-g-~ 250 (827)
....++|+++++.+...+ +-+..+|+..-..+...| .+++++++++.++... +.+..+|+.....+.+. + +
T Consensus 67 ~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n----PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN----LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHHCCSC
T ss_pred CCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHhcCCC
Confidence 344455666666666654 345556666666665555 3666666666666665 66666666666666655 5 5
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChh--------HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcC
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPY--------KAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~--------~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g 319 (827)
+++++++++++.+..++ |..+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.....+.+.+
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 66666666666655543 6666665555554444444 444444444443222 4444444444443333
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.68 E-value=6.8e-08 Score=90.11 Aligned_cols=146 Identities=11% Similarity=0.020 Sum_probs=119.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 003353 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLN 282 (827)
Q Consensus 203 li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~ 282 (827)
|...+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|++..+..+. +..+|..+..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~----p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP----RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH----HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445566788999999999987665 566677888999999999999999999999987765 88999999999999
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKL-FQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
.|++++|+..|++..+... -+..+|..+...|.+.|++++|.+. ++++.+.. +-+..+|......+...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999988532 2578899999999999999876665 58888875 5677888888888877775
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=3.2e-07 Score=105.90 Aligned_cols=154 Identities=12% Similarity=0.006 Sum_probs=99.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A 289 (827)
.|++++|.+.+++.++.. +.+..++..+...|.+.|++++|.+.|++..+..+. +...|..+...|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR----PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 367778888888877765 667778888888888888888888888887776543 677777777778788888888
Q ss_pred HHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHH
Q 003353 290 FEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA---GRLDTSMKVYMEM 366 (827)
Q Consensus 290 ~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m 366 (827)
.+.|++..+.. +.+...+..+..++.+.|++++|.+.++++.+.. +.+...+..+...+... |++++|.+.+++.
T Consensus 77 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 77 AVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88887776643 2246677777777777777777777777777664 44566777777777777 7777777777777
Q ss_pred HhCC
Q 003353 367 QGCG 370 (827)
Q Consensus 367 ~~~g 370 (827)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 6654
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=1.9e-07 Score=89.48 Aligned_cols=162 Identities=10% Similarity=0.085 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH-H
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS-L 315 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~-~ 315 (827)
.+..+...+.+.|++++|...|++..+..+. +...|..+...+...|++++|+..|++..... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455667778888888888888887765443 67778888888888888888888888876542 344333222211 1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP-SAPMYVSLIESYAKAGKLDTA 394 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A 394 (827)
.+.+...+|.+.+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223334566666666654 3456666667777777777777777777766654222 244566666666666776666
Q ss_pred HHHHHHHH
Q 003353 395 LRLWDEMR 402 (827)
Q Consensus 395 ~~l~~~m~ 402 (827)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.66 E-value=1.6e-06 Score=86.78 Aligned_cols=207 Identities=6% Similarity=-0.077 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHH
Q 003353 374 SAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPN--FGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTP--STYS 449 (827)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 449 (827)
+...+..+...+.+.|++++|+..|+++.+...... ...+..+..+|.+.|++++|...|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344555666777888888888888888877543211 346666777888888888888888888765433111 1333
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCC
Q 003353 450 CLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS 529 (827)
Q Consensus 450 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~ 529 (827)
.+..++...|.. .+ ..|..+...+...|++++|...|+++++..+............. .
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----~ 141 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----F 141 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----H
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----H
Confidence 444444432210 00 01112222333456677777777777765544332221111000 0
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVD--LVLYTSVLAHLVRCQDEQNERHLM 607 (827)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~l~ 607 (827)
+...+. .....+...|.+.|++++|+..|+++++..+... ...+..+..+|.+.|+.++|...+
T Consensus 142 ------~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 142 ------LKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp ------HHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------HHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 000000 0001233445566666666666666665543321 234555666666666666666666
Q ss_pred HHHhhccC
Q 003353 608 AILSATKH 615 (827)
Q Consensus 608 ~~l~~~~~ 615 (827)
+.+....+
T Consensus 208 ~~l~~~~~ 215 (225)
T 2yhc_A 208 KIIAANSS 215 (225)
T ss_dssp HHHHHCCS
T ss_pred HHHHhhCC
Confidence 66555443
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=6.4e-07 Score=93.49 Aligned_cols=167 Identities=10% Similarity=0.037 Sum_probs=131.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|.+.+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 556677888888999999999999999999887654 7888999999999999999999999988764 3555433332
Q ss_pred H-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcC
Q 003353 312 I-PSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHR-PSAPMYVSLIESYAKAG 389 (827)
Q Consensus 312 i-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g 389 (827)
. ..+.+.++.++|.+.+++..+.. +.+...+..+...|...|++++|...|.++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2 33667788888888888888876 667788888888999999999999999888875422 12567888888888888
Q ss_pred CHHHHHHHHHHHH
Q 003353 390 KLDTALRLWDEMR 402 (827)
Q Consensus 390 ~~~~A~~l~~~m~ 402 (827)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888887777654
No 112
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.65 E-value=8.6e-06 Score=86.04 Aligned_cols=222 Identities=11% Similarity=0.032 Sum_probs=147.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc-C-C
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKAD-KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNK-G-L 285 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~-g-~ 285 (827)
+.+..++|++++++++..+ |.+..+|+.--..+...| .++++++.++.+....++ +..+|+.-...+.+. + +
T Consensus 66 ~~e~se~AL~lt~~~L~~n----P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN----PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred hCCCCHHHHHHHHHHHHhC----chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3344467788888887776 777777877777777777 478888888887776665 777777777666665 6 7
Q ss_pred hhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--
Q 003353 286 PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD--------AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR-- 355 (827)
Q Consensus 286 ~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-- 355 (827)
+++++++++++.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 77788888877765432 6666666555555555555 7777777777776 4567777777777776665
Q ss_pred -----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcC-----
Q 003353 356 -----LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKL--------------------DTALRLWDEMRIAG----- 405 (827)
Q Consensus 356 -----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~l~~~m~~~g----- 405 (827)
++++++.++++.... +-|...|+-+-..+.+.|+. .+..+...++...+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 577777777777654 34667777666666665543 33333333333321
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003353 406 FRPNFGLFTMIIESHAKSGKLDIAMSIFTDMER 438 (827)
Q Consensus 406 ~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (827)
-.++...+..+++.|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 134677777788888888888888888888764
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=2.2e-06 Score=84.95 Aligned_cols=105 Identities=13% Similarity=0.164 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHH
Q 003353 359 SMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG----KLDIAMSIFT 434 (827)
Q Consensus 359 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g----~~~~A~~~~~ 434 (827)
|.+.|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555432 44455555555555555555555555555443 33444444444444 3 4555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHH
Q 003353 435 DMERAGFLPTPSTYSCLLEMHAS----SGQVDSAMKLYNSMTS 473 (827)
Q Consensus 435 ~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~ 473 (827)
+..+.| +...+..|...|.. .+++++|++.|++..+
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 544432 33444444444443 4444444444444444
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=5.7e-05 Score=84.97 Aligned_cols=359 Identities=9% Similarity=0.025 Sum_probs=212.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH----HcC
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRD-FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA----KAD 249 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~----~~g 249 (827)
++.+.|..+|+.+... .|+...|...+.-..+.+. .+....+|+..+..-. ..+.+..+|...+..+. ..|
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg-~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFE-NYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHST-TCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcC-CCcccHHHHHHHHHHHHhchhhhH
Confidence 6788899999988884 4788898888877777663 3567778888776421 11556788888877654 346
Q ss_pred CHHHHHHHHHHhHhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 250 KLEMSYCCFKKVLDSDCKIDT-QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLF 328 (827)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~-~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~ 328 (827)
+.+.+..+|++....... +. ..|...... .+......+..+ +.... +.+..|..++
T Consensus 104 ~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~f-E~~~~~~~~~~~-------------------~~~~~--~~y~~ar~~y 160 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMG-SLSELWKDFENF-ELELNKITGKKI-------------------VGDTL--PIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHHHTSCCT-THHHHHHHHHHH-HHHHCHHHHHHH-------------------HHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhh-hHHHHHHHHHHH-HHHhccccHHHH-------------------HHHHh--HHHHHHHHHH
Confidence 788899999998874221 22 222222111 111111112222 21111 1233344444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003353 329 QEMKERNFRPSFNIFASLVDSMGKAG--R-----LDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEM 401 (827)
Q Consensus 329 ~~m~~~g~~p~~~t~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 401 (827)
+.+...--..+...|...++.-...+ - .+.+..+|++++... +.+...|...+..+.+.|+.++|..++++.
T Consensus 161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33332100013345555554432211 0 234566777777643 345667777777777778888888888887
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC---------C---CCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 003353 402 RIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAG---------F---LPTPSTYSCLLEMHASSGQVDSAMKLYN 469 (827)
Q Consensus 402 ~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~---~p~~~t~~~li~~~~~~g~~~~A~~l~~ 469 (827)
... +.+...+. .|....+.++. ++.+.+.- . ......|...+..+.+.+..+.|..+|+
T Consensus 240 i~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~ 310 (493)
T 2uy1_A 240 IEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI 310 (493)
T ss_dssp HHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 776 22222222 23322222222 22222110 0 0123457777777777888999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 003353 470 SMTSAGLRPGLSTYTALLTLLAK-RKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTN 548 (827)
Q Consensus 470 ~m~~~g~~pd~~t~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~ 548 (827)
+. +. ...+...|......-.. .++.+.|..+|+..++..+.....+...++...+.|+.+.|..+|+++. ..
T Consensus 311 ~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~ 383 (493)
T 2uy1_A 311 EL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KT 383 (493)
T ss_dssp HH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CB
T ss_pred Hh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HH
Confidence 99 32 12344455433322222 3469999999999998654433345567777888999999999999984 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 549 NFIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 549 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
...|...+.--...|+.+.+..+++++.+
T Consensus 384 ~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 384 SRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777777666678999999999998874
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=7.5e-07 Score=93.95 Aligned_cols=124 Identities=14% Similarity=0.073 Sum_probs=57.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHH
Q 003353 384 SYAKAGKLDTALRLWDEMRIAGFR-PN----FGLFTMIIESHAKSGKLDIAMSIFTDMERA----GFLP-TPSTYSCLLE 453 (827)
Q Consensus 384 ~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~ 453 (827)
.|...|++++|.+.|.+..+.... .+ ..+|+.+...|.+.|++++|...|++..+. |-.. ...+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556666666666554432100 01 234455555566666666666666654431 1000 1234444555
Q ss_pred HHHHcCCHhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 454 MHASSGQVDSAMKLYNSMTSA----GLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 454 ~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
.|.. |++++|+..|++.++. +-.. ...++..+...+.+.|++++|.+.++++++
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555 5555555555555431 0000 022344444445555555555555554443
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.61 E-value=3.8e-06 Score=83.20 Aligned_cols=176 Identities=13% Similarity=0.006 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 003353 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAG----KLDTALRLW 398 (827)
Q Consensus 323 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~l~ 398 (827)
+|.+.|++..+.| +...+..|...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 34555556666666666666666666665543 44555555555555 4 566666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHhHHHHHHH
Q 003353 399 DEMRIAGFRPNFGLFTMIIESHAK----SGKLDIAMSIFTDMERAGFL-PTPSTYSCLLEMHAS----SGQVDSAMKLYN 469 (827)
Q Consensus 399 ~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~A~~l~~ 469 (827)
++..+.| +...+..|...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .++.++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 44555555555554 55666666666665554321 014455555555555 455555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 003353 470 SMTSAGLRPGLSTYTALLTLLAKR-K-----LVDVAAKILLEMKTMG 510 (827)
Q Consensus 470 ~m~~~g~~pd~~t~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g 510 (827)
+..+. ..+...+..|...|... | +.++|...|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55543 12223334444444332 1 4555555555444443
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=2.6e-06 Score=85.20 Aligned_cols=187 Identities=8% Similarity=-0.010 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCH--HHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDT--QSYN 274 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~n 274 (827)
...+..+...+.+.|++++|...|+++++... ..+....++..+..+|.+.|++++|+..|+++.+..+.... .++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455556666777777777777777776541 00112356666777777777777777777777665433111 2333
Q ss_pred HHHHHHHH------------------cCChhHHHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 275 VLMTLFLN------------------KGLPYKAFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 275 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
.+..++.. .|++++|+..|+++++.. |+. ..+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence 34444433 456677777777776642 222 122111110 00000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS----APMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 336 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.....+...|.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 112346677888899999999999888753 33 24677888889999999999999988887653
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.59 E-value=7.7e-07 Score=93.87 Aligned_cols=165 Identities=10% Similarity=0.072 Sum_probs=82.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003353 210 SRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKA 289 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A 289 (827)
.|++++|.+++++..+.. +.. .+...+++++|...|.+. ...|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~----~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL----KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH----CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHc----ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 455666777766665543 111 011135556555555543 3345556666666
Q ss_pred HHHHHHhHhC----CccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHH
Q 003353 290 FEIYESMEKG----ECSL-DGSTYELMIPSLAKSGRLDAAIKLFQEMKERNF---RP--SFNIFASLVDSMGKAGRLDTS 359 (827)
Q Consensus 290 ~~~~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~li~~~~~~g~~~~A 359 (827)
.+.|.+..+. |-.+ -..+|+.+...|.+.|++++|...|++..+... .+ -..+++.+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 6666655432 1000 123555666666666666666666666543210 01 12345555555655 666666
Q ss_pred HHHHHHHHhCCCC---C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 360 MKVYMEMQGCGHR---P--SAPMYVSLIESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 360 ~~~~~~m~~~g~~---p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 403 (827)
+..|++..+.... + ...+++.+...|.+.|++++|++.|++..+
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666655431100 0 023445555555555555555555555443
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=7.9e-07 Score=92.48 Aligned_cols=194 Identities=11% Similarity=0.063 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n 274 (827)
.+...+..+...+.+.|++++|...|++.++.. +.+...|..+...|.+.|++++|...+++..+..+. +...|.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 76 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 76 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 355677788888888889999999888888876 778888888888888888888888888888876554 677888
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhCCccCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDG-STYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
.+..+|...|++++|++.|++..+.. |+. ..+...+....+ ..++.. +........+.+......+... ..
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~ 148 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IA 148 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HH
Confidence 88888888888888888888876532 211 011111111111 111111 1122223334444444444332 25
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 003353 354 GRLDTSMKVYMEMQGCGHRPSA-PMYVSLIESYAKA-GKLDTALRLWDEMRI 403 (827)
Q Consensus 354 g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~-g~~~~A~~l~~~m~~ 403 (827)
|++++|.+.+++..+. .|+. .....+...+.+. +.+++|.++|.+..+
T Consensus 149 ~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 AERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777777776654 3333 3333333334443 556777777776654
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.44 E-value=1.1e-05 Score=79.36 Aligned_cols=124 Identities=11% Similarity=-0.047 Sum_probs=58.0
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+...+...|++++|++.|++.. .|+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3334444444444444444432 2344444444444444444444444444444433 2334444444555555555
Q ss_pred HHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 356 LDTSMKVYMEMQGCGHR--------------P-SAPMYVSLIESYAKAGKLDTALRLWDEMRIA 404 (827)
Q Consensus 356 ~~~A~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 404 (827)
+++|...|++..+.... | +...+..+..+|.+.|++++|.+.|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555544442210 0 1144555555555555555555555555543
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.43 E-value=1.2e-05 Score=83.83 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=93.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CC----HHHH
Q 003353 203 LFDVLNESRDFDGMLSLFDEMVHDSSKNGISL----FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-ID----TQSY 273 (827)
Q Consensus 203 li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~ 273 (827)
.+..+...|++++|..++++...... ..++ ...+..+...+...|++++|...|++..+.... ++ ..+|
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 35667777888888888888776431 0111 112334555666666777777777777653222 22 2356
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhC-----CccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHH
Q 003353 274 NVLMTLFLNKGLPYKAFEIYESMEKG-----ECSLD-GSTYELMIPSLAKSGRLDAAIKLFQEMKER----NFRPS-FNI 342 (827)
Q Consensus 274 n~li~~~~~~g~~~~A~~~~~~m~~~-----g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t 342 (827)
+.+...|...|++++|++.|++..+. +..+. ..+|..+...|.+.|++++|.+.+++..+. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 77777777777777777777776531 11111 225566666666666666666666665432 11111 345
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHH
Q 003353 343 FASLVDSMGKAGR-LDTSMKVYMEMQ 367 (827)
Q Consensus 343 ~~~li~~~~~~g~-~~~A~~~~~~m~ 367 (827)
|..+..+|.+.|+ +++|.+.+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5556666666663 466666555544
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.42 E-value=3.2e-05 Score=80.61 Aligned_cols=166 Identities=12% Similarity=0.092 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC---C
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF------SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK---I 268 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p 268 (827)
..+...+..+...|++++|.+.+.+.++.. +... ..+..+...+...|++++|...|++..+.... +
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc----cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 455566777788888888888888877654 2222 22344555666777788888877776643211 1
Q ss_pred C--HHHHHHHHHHHHHcCChhHHHHHHHHhHhC-CccCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C
Q 003353 269 D--TQSYNVLMTLFLNKGLPYKAFEIYESMEKG-ECSLD-----GSTYELMIPSLAKSGRLDAAIKLFQEMKERN----F 336 (827)
Q Consensus 269 ~--~~~~n~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g----~ 336 (827)
. ..+|+.+...|...|++++|++.|++..+. ...|+ ..++..+...|.+.|++++|...+++..+.. .
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 1 346777777777777777777777776521 00111 1466667777777777777777777665431 0
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 003353 337 RP-SFNIFASLVDSMGKAGRLDTS-MKVYMEMQ 367 (827)
Q Consensus 337 ~p-~~~t~~~li~~~~~~g~~~~A-~~~~~~m~ 367 (827)
.. -..+|..+..+|.+.|++++| ...+++..
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 01 145566666667777777766 55555544
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.41 E-value=1.5e-05 Score=78.35 Aligned_cols=130 Identities=12% Similarity=0.005 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHc
Q 003353 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKD 527 (827)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~ 527 (827)
+..+...+...|++++|...|++.. .|+...+..+...+...|++++|.+.++++++..+.....+..+..+|.+.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3445555666667777766666552 456666666666666777777777777776665544445666666677777
Q ss_pred CCHHHHHHHHHHHhhCCC--------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003353 528 GSVDHALRWLRFMGSSGI--------------RTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAK 581 (827)
Q Consensus 528 g~~~~A~~~~~~m~~~~~--------------~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 581 (827)
|++++|.+.|+++.+... .|+ ...+..+..+|.+.|++++|.+.|++.++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 777777777777665321 121 245666777777888888888888888776554
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=8.3e-06 Score=76.35 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
..+..+...+...|++++|...|++.+... +.+..++..+...+.+.|++++|...|++..+..+. +...|..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 356666677777777777777777777765 666777777777777777777777777777665432 566677777
Q ss_pred HHHHHcCChhHHHHHHHHhHhCCccCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 003353 278 TLFLNKGLPYKAFEIYESMEKGECSLDGSTYEL--MIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~--li~~~~~~g~~~~A~~~~~~m~ 332 (827)
.++...|++++|.+.|++..+... .+...+.. ....+.+.|++++|.+.+....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777777777777665421 13333322 2333555666666666665543
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.40 E-value=2.8e-05 Score=81.09 Aligned_cols=126 Identities=6% Similarity=-0.045 Sum_probs=56.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 003353 382 IESYAKAGKLDTALRLWDEMRIAGF-RPNF----GLFTMIIESHAKSGKLDIAMSIFTDMERAGFL-PT----PSTYSCL 451 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~~g~-~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~l 451 (827)
+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455556666666666666554221 1111 11223344444445555555555555542111 11 1235555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 452 LEMHASSGQVDSAMKLYNSMTS----A-GLRPGL-STYTALLTLLAKRKLVDVAAKILLEMK 507 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~----~-g~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~ 507 (827)
...|...|++++|+..|+++.+ . +..+.. .++..+...|.+.|++++|.+.+++++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555555555555555542 0 111111 134444444555555555555554444
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.37 E-value=7.5e-06 Score=73.49 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
..+......+.+.|++++|++.|++.++.. |.+..+|..+..+|.+.|++++|+..|++..+.++. +...|..+.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHH
Confidence 355566666777777777777777776665 666667777777777777777777777766665443 566666666
Q ss_pred HHHHHcCChhHHHHHHHHhHhC
Q 003353 278 TLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
.+|...|++++|++.|++.++.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 6666677777777777666653
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=1.4e-06 Score=89.05 Aligned_cols=192 Identities=10% Similarity=-0.048 Sum_probs=130.3
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCC------C-C-------
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVML-------FDVLNESRDFDGMLSLFDEMVHDSSK------N-G------- 231 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~l-------i~~l~~~g~~~~A~~l~~~m~~~~~~------~-~------- 231 (827)
..++...|++.|..+.+.+ +-..+.|..+ ...+.+.++..++...+..-+..... + .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 4578889999999999976 5667889887 57777777777777777666652100 0 0
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCC--HH
Q 003353 232 ---ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLD--GS 306 (827)
Q Consensus 232 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~ 306 (827)
..-...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 0113455567777888888888888888887655 333255556667778888888888887554431 111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS--FNIFASLVDSMGKAGRLDTSMKVYMEMQGC 369 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (827)
.+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566677778888888888888888775433243 335566667777788888888888877765
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=1.3e-05 Score=70.55 Aligned_cols=97 Identities=14% Similarity=0.211 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+..+. +..+|..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 3455566666666666666666666666554 455566666666666666666666666666554322 45555556
Q ss_pred HHHHHHcCChhHHHHHHHHhHh
Q 003353 277 MTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~ 298 (827)
...+...|++++|.+.|+++.+
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666666666666665554
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=1.7e-05 Score=81.09 Aligned_cols=199 Identities=10% Similarity=-0.029 Sum_probs=140.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHhHh------------CCC---
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRV-------IQYLAKADKLEMSYCCFKKVLD------------SDC--- 266 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~g~--- 266 (827)
+.++.++|.+.|.++.+.. |.....|..+ ...+.+.++..+++..+..-.+ .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d----P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD----ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC----hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 6889999999999999987 8889999888 6777777777777777766554 121
Q ss_pred -C----CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--
Q 003353 267 -K----IDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPS-- 339 (827)
Q Consensus 267 -~----p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 339 (827)
. --...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 0 002234456677788899999999998887654 444355566667888899999999887554322 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003353 340 FNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPS--APMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMI 416 (827)
Q Consensus 340 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 416 (827)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+..|
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 23677788888888899999888888875432243 3356667777888888888888888888764 444444333
No 130
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.35 E-value=0.00021 Score=75.03 Aligned_cols=172 Identities=10% Similarity=0.075 Sum_probs=118.5
Q ss_pred ccCCh-hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 003353 173 VINDS-DTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRD----------FDGMLSLFDEMVHDSSKNGISLFSAYNRV 241 (827)
Q Consensus 173 ~~~~~-~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~----------~~~A~~l~~~m~~~~~~~~~~~~~~~~~l 241 (827)
..+.. ++|+++++.+...+ +-+..+|+.--..+...+. +++++.+++.++... |.+..+|+.-
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~----PKny~aW~hR 114 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN----PKSYGTWHHR 114 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC----CCCHHHHHHH
Confidence 34444 46888888888865 4556677765554444333 578888888888776 7888888888
Q ss_pred HHHHHHcCC--HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc
Q 003353 242 IQYLAKADK--LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL-PYKAFEIYESMEKGECSLDGSTYELMIPSLAKS 318 (827)
Q Consensus 242 i~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~ 318 (827)
...+.+.|+ +++++.+++.+.+..+. |..+|+.-.-.+...|. ++++++.++++++..+. |...|+.....+.+.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 888888774 78888888888877665 88888887777777777 47888888888776433 677777666665554
Q ss_pred --------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 319 --------------GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 319 --------------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
+.++++.+.++...... +-|..+|+-+--.+.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34566666666666655 55666665444444433
No 131
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.34 E-value=0.00029 Score=73.91 Aligned_cols=172 Identities=8% Similarity=0.043 Sum_probs=126.4
Q ss_pred HHhcCChh-HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 207 LNESRDFD-GMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK----------LEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 207 l~~~g~~~-~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
..+.|.++ +|+++++.++..+ |.+..+|+.--..+...+. +++++.+++.+....++ +..+|+.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n----P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~h 113 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 113 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 34566664 8999999999987 8889999887777766554 67888899988887765 8889988
Q ss_pred HHHHHHHcCC--hhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 276 LMTLFLNKGL--PYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR-LDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352 (827)
Q Consensus 276 li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 352 (827)
-...+.+.+. +++++++++++.+.... |...|+.-.-.+...|. ++++.+.++++++.+ +-|...|+.....+.+
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 8888877774 78899999988876433 77788777777777787 588888888888876 5677888877766665
Q ss_pred c--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003353 353 A--------------GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386 (827)
Q Consensus 353 ~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 386 (827)
. +.++++++.+.+..... +-|..+|+-+-..+.
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 5 34566666666666544 335556654433333
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.33 E-value=7.2e-06 Score=76.24 Aligned_cols=99 Identities=8% Similarity=-0.066 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...+..+...+.+.|++++|...|++++... |.+...|..+..+|.+.|++++|+..|++..+..+. +...|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 34456666666677777777777777777665 666777777777777777777777777777665543 5566666
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
+..+|.+.|++++|++.|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777776653
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.32 E-value=3.7e-06 Score=80.24 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=89.1
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH-HHHcCCH
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY-LAKADKL 251 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 251 (827)
..+++++|+..++.+.... +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ |...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CSCHHHHHHHHHHHHHHTTTC
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhcCCc
Confidence 3466777787887777654 4567788888888888888888888888888776 6677778778777 7778887
Q ss_pred --HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 252 --EMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 252 --~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
++|...|++..+..+. +...|..+...|...|++++|...|++..+.
T Consensus 96 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888887776543 5677777888888888888888888887764
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.31 E-value=8e-06 Score=73.31 Aligned_cols=99 Identities=7% Similarity=-0.016 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
...+..+...|.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|++.|++.++... .+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 345555666666666666666666666655433 556666666666666666666666666655321 244556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 003353 315 LAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~g 335 (827)
+...|++++|.+.|++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 666666666666666665543
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.31 E-value=1.9e-05 Score=73.83 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~ 316 (827)
.+..+...+...|++++|...|++..+..+. +..+|..+...+...|++++|++.+++..+.. +.+..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4444555555555555555555555543322 44555555555555555555555555554432 123444444444555
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 003353 317 KSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 317 ~~g~~~~A~~~~~~m~~~ 334 (827)
..|++++|.+.++++.+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 555555555555554443
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=5.7e-06 Score=80.50 Aligned_cols=155 Identities=10% Similarity=0.004 Sum_probs=67.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCC-CCHHHHHHHHHHHHHc
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS----DCK-IDTQSYNVLMTLFLNK 283 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~n~li~~~~~~ 283 (827)
..|++++|.+.++.+.... .....++..+...|...|++++|...+++..+. +.. ....+++.+...|...
T Consensus 4 ~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP----ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ---CHHHHHHHHHHHHTST----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 3455555555333332211 233445555555555555555555555554431 100 1233445555555555
Q ss_pred CChhHHHHHHHHhHhC----CccC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHh
Q 003353 284 GLPYKAFEIYESMEKG----ECSL--DGSTYELMIPSLAKSGRLDAAIKLFQEMKER----NFR-PSFNIFASLVDSMGK 352 (827)
Q Consensus 284 g~~~~A~~~~~~m~~~----g~~p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~li~~~~~ 352 (827)
|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. .-..++..+...+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 5555555555554331 1000 1223444455555555555555555554321 100 001123444445555
Q ss_pred cCCHHHHHHHHHHHH
Q 003353 353 AGRLDTSMKVYMEMQ 367 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~ 367 (827)
.|++++|.+.+++..
T Consensus 160 ~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 160 EKNLLEAQQHWLRAR 174 (203)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 555555555554443
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.30 E-value=1.8e-05 Score=69.53 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHH
Q 003353 235 FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPS 314 (827)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~ 314 (827)
..++..+...+.+.|++++|.+.|+++.+..+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34555555555556666666666655554332 244555555555555555555555555554432 1234445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 003353 315 LAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 315 ~~~~g~~~~A~~~~~~m~~~ 334 (827)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555544
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=1.6e-06 Score=92.72 Aligned_cols=87 Identities=13% Similarity=-0.078 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSM 350 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 350 (827)
.+|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|...|+++.+.. +.+..++..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 344444445555555555555555544432 1134444444455555555555555555554443 33344444444555
Q ss_pred HhcCCHHHH
Q 003353 351 GKAGRLDTS 359 (827)
Q Consensus 351 ~~~g~~~~A 359 (827)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.30 E-value=7.5e-05 Score=77.76 Aligned_cols=161 Identities=7% Similarity=-0.091 Sum_probs=81.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC---CCC--HHHHHH
Q 003353 416 IIESHAKSGKLDIAMSIFTDMERAGFLPT-----PSTYSCLLEMHASSGQVDSAMKLYNSMTSAGL---RPG--LSTYTA 485 (827)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ 485 (827)
.+..+...|++++|.+.+++..+...... ...+..+...+...|++++|+..+++..+... .+. ..+|+.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34455555566666555555544321110 01122334445555666666666666654211 111 235556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH---CCCCch----HhHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCCC-HHHHH
Q 003353 486 LLTLLAKRKLVDVAAKILLEMKT---MGYSVD----VSASDVLMVYIKDGSVDHALRWLRFMGSSG----IRTN-NFIVR 553 (827)
Q Consensus 486 li~~~~~~g~~~~A~~l~~~m~~---~g~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~~~----~~p~-~~~~~ 553 (827)
+...|...|++++|...++++.+ ...... .++..+...|.+.|++++|+..+++..+.. .... ..++.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66666666666666666666552 111111 244556666666666666666666554321 1111 34555
Q ss_pred HHHHHHHHcCCHHHH-HHHHHHHH
Q 003353 554 QLFESCMKNALYESA-KPLLETYV 576 (827)
Q Consensus 554 ~ll~~~~~~g~~~~A-~~~~~~m~ 576 (827)
.+...|.+.|++++| ...+++..
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 555666666666666 55555543
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.30 E-value=1.4e-05 Score=70.94 Aligned_cols=118 Identities=7% Similarity=-0.035 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...+..+...+...|++++|...+++..... +.+..++..+...+...|++++|...+++..+..+. +...|..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 86 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHH
Confidence 3455555566666666666666666665554 445556666666666666666666666665554322 45555555
Q ss_pred HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR 320 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~ 320 (827)
...+...|++++|.+.|++..+... .+...+..+..++.+.|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 5555555566666555555554321 134444444444444443
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.28 E-value=1.1e-05 Score=72.12 Aligned_cols=98 Identities=8% Similarity=0.013 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...|..+...+.+.|++++|...|++..+.. +.+..++..+...|...|++++|...|++..+..+. +...|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 89 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 34556666666666666666666666666554 555666666666666666666666666666554332 4555556
Q ss_pred HHHHHHHcCChhHHHHHHHHhHh
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+..++.+.|++++|.+.|++..+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666665554
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.26 E-value=8e-06 Score=79.47 Aligned_cols=159 Identities=13% Similarity=0.018 Sum_probs=119.3
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHHHcCC
Q 003353 173 VINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSS--KNGISLFSAYNRVIQYLAKADK 250 (827)
Q Consensus 173 ~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~~~~li~~~~~~g~ 250 (827)
..|++++|.+.++.+...+ .....++..+...+...|++++|...+++.+.... .+.+....++..+...|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578889999666665532 24567889999999999999999999999887321 0113456688999999999999
Q ss_pred HHHHHHHHHHhHhC----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHhC----Ccc-CCHHHHHHHHHHHHHcC
Q 003353 251 LEMSYCCFKKVLDS----DCKI--DTQSYNVLMTLFLNKGLPYKAFEIYESMEKG----ECS-LDGSTYELMIPSLAKSG 319 (827)
Q Consensus 251 ~~~A~~~~~~m~~~----g~~p--~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g~~-pd~~t~~~li~~~~~~g 319 (827)
+++|...+++..+. +..+ ...+++.+...+...|++++|.+.+++.... +.. .-..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999887653 2111 2456888899999999999999999988642 111 11334678888999999
Q ss_pred CHHHHHHHHHHHHH
Q 003353 320 RLDAAIKLFQEMKE 333 (827)
Q Consensus 320 ~~~~A~~~~~~m~~ 333 (827)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.26 E-value=1.7e-05 Score=70.96 Aligned_cols=120 Identities=10% Similarity=-0.023 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|...|++..+..+. +...|..+...+...|++++|++.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 445566667777777777777777777776665432 56666666666666777777777776666542 2245566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 354 (827)
..++.+.|++++|.+.+++..+.. +.+...+..+..++.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 666666666666666666666543 233344555555544433
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.26 E-value=4.1e-06 Score=87.02 Aligned_cols=192 Identities=8% Similarity=-0.086 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 376 PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMH 455 (827)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 455 (827)
..+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|...+++..+... .+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 34444444455555555555555554443221 344445555555555555555555555544322 1344555555555
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHH
Q 003353 456 ASSGQVDSAMKLYNSMTSAGLRPGL-STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHAL 534 (827)
Q Consensus 456 ~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~ 534 (827)
...|++++|...|++..+. .|+. ..+...+....+ ..++.. +..........+......+..+ ..|+.++|+
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL-IAAEREREL 155 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH-HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHH
Confidence 5555555555555555431 1110 000001111000 001111 1112222222222222222211 256777777
Q ss_pred HHHHHHhhCCCCCCHHHH-HHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 003353 535 RWLRFMGSSGIRTNNFIV-RQLFESCMKN-ALYESAKPLLETYVES 578 (827)
Q Consensus 535 ~~~~~m~~~~~~p~~~~~-~~ll~~~~~~-g~~~~A~~~~~~m~~~ 578 (827)
+.+++..+. .|+.... ..+...+.+. +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 777766643 3443322 2222223333 5677788888777653
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.23 E-value=4.3e-06 Score=77.53 Aligned_cols=98 Identities=8% Similarity=-0.089 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...+..+...+.+.|++++|...|++.+... +.+...|..+..+|.+.|++++|+..|++..+..+. +...|..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 44456666666677777777777777776665 666667777777777777777777777776665443 5566666
Q ss_pred HHHHHHHcCChhHHHHHHHHhHh
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+..+|...|++++|++.|++..+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666677777777777766654
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.22 E-value=1e-05 Score=77.20 Aligned_cols=122 Identities=11% Similarity=0.171 Sum_probs=93.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH-HHHcCCh
Q 003353 208 NESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTL-FLNKGLP 286 (827)
Q Consensus 208 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~-~~~~g~~ 286 (827)
...|++++|...+++.++.. +.+..+|..+...|...|++++|...|++..+..+. +...|..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN----PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHC----CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCc
Confidence 45678888888888888876 778888888888888899999999988888776543 67777777777 7778887
Q ss_pred --hHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 287 --YKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 287 --~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
++|+..|++..+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888887753 2256677778888888888888888888888764
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.22 E-value=3e-05 Score=68.80 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003353 307 TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYA 386 (827)
Q Consensus 307 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 386 (827)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 33334444444444444444444444332 2233444444444444444444444444444332 123334444444444
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003353 387 KAGKLDTALRLWDEMRI 403 (827)
Q Consensus 387 ~~g~~~~A~~l~~~m~~ 403 (827)
+.|++++|.+.+++..+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 44444444444444443
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=2.8e-05 Score=69.30 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...|..+...+.+.|++++|...|++.++.. +.+..+|..+..+|.+.|++++|+..|++..+..+. +...|..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 3456667777778888888888888887776 677778888888888888888888888877776543 66777777
Q ss_pred HHHHHHcCChhHHHHHHHHhHhC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
..++...|++++|.+.|++..+.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 77777788888888887777653
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.17 E-value=2.7e-05 Score=83.10 Aligned_cols=150 Identities=9% Similarity=-0.020 Sum_probs=115.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---------------HHHHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---------------FSAYN 239 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---------------~~~~~ 239 (827)
.++++|+..|+.+.... +.+...|..+...+.+.|++++|...|++.++.. +.+ ..+|.
T Consensus 127 ~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL----EYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----TTCCCCCSHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh----hccccCChHHHHHHHHHHHHHHH
Confidence 33444444444333221 2245678888888999999999999999998876 444 58889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcC
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g 319 (827)
.+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++..+... -+...+..+..++.+.|
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654 788899999999999999999999999887532 36678888888888889
Q ss_pred CHHHH-HHHHHHHH
Q 003353 320 RLDAA-IKLFQEMK 332 (827)
Q Consensus 320 ~~~~A-~~~~~~m~ 332 (827)
+.++| ...+..|.
T Consensus 279 ~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 279 RQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888 44566554
No 150
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.17 E-value=7.4e-06 Score=76.15 Aligned_cols=101 Identities=10% Similarity=-0.052 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
|.+..++..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++..+... -+...|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHH
Confidence 444556666666666666666666666666665443 566666666666666666666666666655421 134556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..+|.+.|++++|...|+++.+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666654
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.16 E-value=2.4e-06 Score=83.49 Aligned_cols=96 Identities=13% Similarity=-0.027 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF----------------SAYNRVIQYLAKADKLEMSYCCFKKV 261 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m 261 (827)
..+..+...+.+.|++++|...|++.+... +.+. .++..+..+|.+.|++++|+..+++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF----IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 355566666667777777777777776653 2221 44444455555555555555555544
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 262 LDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 262 ~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.+..+. +...|..+..+|...|++++|++.|++..+
T Consensus 115 l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 115 LKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 443321 344444444444444445445444444443
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.14 E-value=4.6e-06 Score=81.39 Aligned_cols=123 Identities=11% Similarity=-0.058 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhCCcc-C---C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 271 QSYNVLMTLFLNKGLPYKAFEIYESMEKGECS-L---D-----------GSTYELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 271 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~-p---d-----------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
..+..+...+...|++++|++.|++..+.... | . ...|..+..++.+.|++++|...++++.+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455555555556666666666555542111 0 0 1344455555555555555555555555543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 336 FRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 336 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 395 (827)
+.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555554432 223444444444444444444433
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.13 E-value=6.9e-05 Score=65.03 Aligned_cols=98 Identities=14% Similarity=-0.031 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...+..+...+...|++++|...|++..... +.+...+..+...+.+.|++++|...+++..+..+. +...|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 3456666666677777777777777776665 556666667777777777777777777766655432 55666666
Q ss_pred HHHHHHcCChhHHHHHHHHhHhC
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
..++...|++++|.+.+++..+.
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHc
Confidence 66666666666676666666654
No 154
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.13 E-value=8.9e-06 Score=75.34 Aligned_cols=101 Identities=13% Similarity=-0.033 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|...|++..+..+. +...|..+..+|...|++++|++.|++...... .+...+..+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~l 95 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHH
Confidence 444555555666666666666666666666554433 555666666666666666666666666555321 134455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..++...|++++|.+.|++..+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666666666666666655543
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.10 E-value=1.3e-05 Score=73.45 Aligned_cols=97 Identities=10% Similarity=-0.111 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...+..+...+.+.|++++|...|++.+... |.+...|..+..+|.+.|++++|+..|++..+..+. +...|..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHH
Confidence 3455556666677777777777777777665 666777777777777777777777777777665543 55666666
Q ss_pred HHHHHHcCChhHHHHHHHHhHh
Q 003353 277 MTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~ 298 (827)
..+|...|++++|++.|++..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776655
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.08 E-value=4.8e-05 Score=68.18 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CC----HH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--ID----TQ 271 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~ 271 (827)
.++..+...+.+.|++++|+..|++.++.. |.+..+|+.+..+|.+.|++++|++.|++..+..+. ++ ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 355566677777777777777777777665 666777777777777777777777777766543211 11 13
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+|..+..++...|++++|++.|++.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666554
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.06 E-value=1.7e-05 Score=72.69 Aligned_cols=101 Identities=15% Similarity=-0.010 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|...|++..+..+. +...|..+..+|.+.|++++|+..|++...... .+...+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHH
Confidence 445566667777777788888888888777766543 677777777777777888888888877776532 245566777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..++...|++++|.+.|++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777654
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.04 E-value=7.5e-05 Score=67.32 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n 274 (827)
.+...|..+...+...|++++|...|++.+... +.+..+|..+..+|.+.|++++|...|++..+..+. +...|.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHH
Confidence 456667777777777777777777777777665 666677777777777777777777777777665543 566667
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHh
Q 003353 275 VLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.+..+|...|++++|++.|++..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777776654
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=4.6e-05 Score=67.62 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CC----HH
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--ID----TQ 271 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~ 271 (827)
..|..+...+...|++++|...|++..... +.+..++..+...|...|++++|...+++..+..+. ++ ..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 455666666667777777777777766655 556666666666777777777777766666543221 11 45
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+|..+...+...|++++|.+.|++..+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556666666666666666666666655
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.01 E-value=0.00016 Score=62.64 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHH
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLA 316 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~ 316 (827)
.+..+...+...|++++|...|++..+..+. +...|..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444445555555555555555555443322 44444444455555555555555555444431 113344444444444
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 003353 317 KSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 317 ~~g~~~~A~~~~~~m~~~ 334 (827)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 444444444444444443
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.00 E-value=8.5e-05 Score=69.70 Aligned_cols=99 Identities=9% Similarity=-0.043 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNV 275 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~ 275 (827)
+...|..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..|++..+..+. +...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 45577777888888888888888888888876 777888888888888888888888888888776644 6778888
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhC
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
+..+|...|++++|++.|++..+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888887664
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00014 Score=64.60 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003353 308 YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK 387 (827)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 387 (827)
+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333444444444444444444444433 2334444444444444444444444444444432 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 003353 388 AGKLDTALRLWDEMRI 403 (827)
Q Consensus 388 ~g~~~~A~~l~~~m~~ 403 (827)
.|++++|.+.|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 4444444444444443
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.96 E-value=5.8e-05 Score=67.00 Aligned_cols=93 Identities=11% Similarity=-0.026 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 003353 201 VMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLF 280 (827)
Q Consensus 201 ~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~ 280 (827)
..+...+.+.|++++|...|++.++.. |.+..+|..+..++.+.|++++|+..|++..+..+. +...|..+..+|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 334455555666666666666666554 555566666666666666666666666665554433 455555566666
Q ss_pred HHcCChhHHHHHHHHhHh
Q 003353 281 LNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 281 ~~~g~~~~A~~~~~~m~~ 298 (827)
...|++++|++.|++.++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665554
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.93 E-value=7.5e-05 Score=64.15 Aligned_cols=100 Identities=10% Similarity=0.067 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CCHHHHH
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-IDTQSYN 274 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~n 274 (827)
+...+..+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|++++|...|++..+..+. .+...|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD----PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 34456666667777777777777777777665 566667777777777777777777777777664321 1466667
Q ss_pred HHHHHHHHc-CChhHHHHHHHHhHhC
Q 003353 275 VLMTLFLNK-GLPYKAFEIYESMEKG 299 (827)
Q Consensus 275 ~li~~~~~~-g~~~~A~~~~~~m~~~ 299 (827)
.+...+... |++++|.+.+++....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 777777777 7777777777776654
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.92 E-value=6.2e-05 Score=67.48 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-LSTYTALLTLLAKRKLVDVAAKILLEMKT 508 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (827)
++..+...+.+.|++++|+..|++.++ +.|+ ...|..+..+|.+.|++++|++.+++.++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344445555555555555555555544 2232 33444444455555555555555554443
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.90 E-value=8.4e-05 Score=65.96 Aligned_cols=96 Identities=6% Similarity=-0.054 Sum_probs=86.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 003353 164 MVHITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQ 243 (827)
Q Consensus 164 ~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~ 243 (827)
....+..+...|++++|+..|+.+.+.. +.+...|..+..++.+.|++++|+..|++.++.. |.+..++..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHH
Confidence 4455677788999999999999999975 5688999999999999999999999999999987 888999999999
Q ss_pred HHHHcCCHHHHHHHHHHhHhCC
Q 003353 244 YLAKADKLEMSYCCFKKVLDSD 265 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g 265 (827)
+|.+.|++++|+..|++..+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 167
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.90 E-value=0.00046 Score=78.84 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 003353 177 SDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRD----------FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLA 246 (827)
Q Consensus 177 ~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~----------~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~ 246 (827)
.++|++.++.+...+ +-+..+|+..-.++...|+ ++++++.++.+++.. +.+..+|+.-...+.
T Consensus 45 ~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~----pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN----PKSYGTWHHRCWLLS 118 (567)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 456888888888875 4566788877777776666 888999999988887 888888988888888
Q ss_pred HcC--CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHc-----
Q 003353 247 KAD--KLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG-LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKS----- 318 (827)
Q Consensus 247 ~~g--~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~----- 318 (827)
+.| +++++++.++++.+..+. |..+|+.-...+.+.| .++++++.++++++..+. |...|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccc
Confidence 888 678899999988887765 8888888888888888 788888888888876543 777787777666653
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003353 319 ---------GRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGR 355 (827)
Q Consensus 319 ---------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 355 (827)
+.++++.+.++++.... +-|...|+-+-..+.+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33455555555555543 3444555555444444444
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.88 E-value=0.00017 Score=64.98 Aligned_cols=101 Identities=11% Similarity=0.010 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..|++..+... .+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 455666777777777777777777777776665443 566677777777777777777777777665432 245566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..++...|++++|...|+++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 66677777777777776666543
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=0.00022 Score=64.83 Aligned_cols=99 Identities=11% Similarity=0.002 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQ 271 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 271 (827)
.+...+..+...+.+.|++++|...|++.++.. +.+ ..++..+...|.+.|++++|...+++..+..+. +..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHH
Confidence 345556666666666666666666666666543 332 455555666666666666666666665554322 455
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
.|..+..+|...|++++|.+.|++..+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555566666666666666665554
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.87 E-value=0.00017 Score=67.65 Aligned_cols=102 Identities=8% Similarity=-0.070 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELM 311 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 311 (827)
+.+...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|++.|++.++... -+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 334556777777777777777777777777765543 667777777777777777777777777766432 246667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 312 IPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 312 i~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
..++.+.|++++|.+.|++..+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 777777777777777777776653
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=0.00046 Score=62.66 Aligned_cols=101 Identities=17% Similarity=0.016 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHH
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID----TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGST 307 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 307 (827)
+.+...+..+...+.+.|++++|...|++..+.. |+ ...|..+...|...|++++|++.+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 4456667777777777777777777777776643 33 4566666666777777777777776666542 124556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003353 308 YELMIPSLAKSGRLDAAIKLFQEMKERN 335 (827)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 335 (827)
+..+..++...|++++|.+.+++..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6666666666677777776666666553
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.82 E-value=0.00011 Score=82.21 Aligned_cols=117 Identities=9% Similarity=0.002 Sum_probs=84.3
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 003353 171 LKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK 250 (827)
Q Consensus 171 l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (827)
+...+++++|++.|+.+.+.. +.+..+|..+..++.+.|++++|++.+++.++.. +.+..++..+..+|.+.|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Confidence 345678888888888887764 4567788888888888888888888888888776 7778888888888888888
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHH--HHHcCChhHHHHHHH
Q 003353 251 LEMSYCCFKKVLDSDCKIDTQSYNVLMTL--FLNKGLPYKAFEIYE 294 (827)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~n~li~~--~~~~g~~~~A~~~~~ 294 (827)
+++|.+.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888887765443 34455555544 777788888888877
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00055 Score=75.27 Aligned_cols=163 Identities=6% Similarity=-0.032 Sum_probs=79.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC-CC
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGIS-------------LFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK-ID 269 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 269 (827)
...+.+.|++++|++.|.++++........ ...++..++..|.+.|++++|.+.+..+.+.-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 355677788888888888887754210000 0124556677777777777777776665431101 11
Q ss_pred H----HHHHHHHHHHHHcCChhHHHHHHHHhHh----CCccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C--
Q 003353 270 T----QSYNVLMTLFLNKGLPYKAFEIYESMEK----GECSLD-GSTYELMIPSLAKSGRLDAAIKLFQEMKERN--F-- 336 (827)
Q Consensus 270 ~----~~~n~li~~~~~~g~~~~A~~~~~~m~~----~g~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-- 336 (827)
. .+.+.+...+...|++++|.+++++... .+..+. ..++..+...+...|++++|..+++++...- .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1122222233334555666665555432 111111 2344455555555555555555555543220 0
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 337 R-PSFNIFASLVDSMGKAGRLDTSMKVYMEM 366 (827)
Q Consensus 337 ~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m 366 (827)
. ....++..++..|...|++++|...+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 0 01234444455555555555555555444
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.80 E-value=0.00023 Score=62.88 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGH--RPS----APMYVSLI 382 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~li 382 (827)
..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+... .++ ..++..+.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333334444444444444444444332 22333444444444444444444444444433210 011 33344444
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003353 383 ESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 383 ~~~~~~g~~~~A~~l~~~m~~ 403 (827)
..+.+.|++++|.+.|++..+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444444
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00097 Score=73.22 Aligned_cols=165 Identities=10% Similarity=0.008 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHH
Q 003353 308 YELMIPSLAKSGRLDAAIKLFQEMKERN-FRPSF----NIFASLVDSMGKAGRLDTSMKVYMEMQG----CGHRPS-APM 377 (827)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~ 377 (827)
+..+...|.+.|++++|.+.+..+.+.- -.++. .+.+.+...+...|++++|..++.+... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555566666666665555544321 00111 1222233333345666666666655442 121222 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC-C-C--HH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMRIA--GF--RP-NFGLFTMIIESHAKSGKLDIAMSIFTDMERA--GFL-P-T--PS 446 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~ 446 (827)
+..+...|...|++++|..++++.... +. .+ ...++..++..|...|++++|..+++..... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666666667777776666665432 11 11 1344555666666666666666666655421 111 1 1 12
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMT 472 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~ 472 (827)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444455555566666665555544
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.78 E-value=3.1e-05 Score=86.41 Aligned_cols=30 Identities=10% Similarity=0.002 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 234 LFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
....+..+...|.+.|++++|...|++..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~ 296 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS 296 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344555555666666666666666665554
No 177
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.77 E-value=0.00073 Score=77.18 Aligned_cols=137 Identities=8% Similarity=0.095 Sum_probs=106.7
Q ss_pred hcCCh-hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 003353 209 ESRDF-DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADK----------LEMSYCCFKKVLDSDCKIDTQSYNVLM 277 (827)
Q Consensus 209 ~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~n~li 277 (827)
+.|++ ++|++.+++++... |.+..+|+.--.++.+.|+ ++++.+.++.+.+..++ +..+|+.-.
T Consensus 40 ~~~~~~eeal~~~~~~l~~n----P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 44444 78899999999988 8889999998888888887 88999999998887765 888888888
Q ss_pred HHHHHcC--ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003353 278 TLFLNKG--LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG-RLDAAIKLFQEMKERNFRPSFNIFASLVDSMGK 352 (827)
Q Consensus 278 ~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 352 (827)
-.+.+.+ +++++++.++++.+.... |..+|+.-..++.+.| .++++.+.++++++.+ +-|...|+.....+.+
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence 8888888 568888888888776433 6777777777777777 7777888777777765 4566777776666655
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.77 E-value=0.00027 Score=60.52 Aligned_cols=95 Identities=8% Similarity=-0.013 Sum_probs=85.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS--LFSAYNRVIQY 244 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~--~~~~~~~li~~ 244 (827)
.+.++...+++++|+..|+.+.+.. +.+...|..+...+.+.|++++|...+++.++.. +. +..++..+...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI----EDEYNKDVWAAKADA 85 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----CCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----cccchHHHHHHHHHH
Confidence 4667778899999999999998875 5678899999999999999999999999999886 66 89999999999
Q ss_pred HHHc-CCHHHHHHHHHHhHhCCCC
Q 003353 245 LAKA-DKLEMSYCCFKKVLDSDCK 267 (827)
Q Consensus 245 ~~~~-g~~~~A~~~~~~m~~~g~~ 267 (827)
|.+. |++++|.+.++...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999 9999999999999886543
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00029 Score=65.79 Aligned_cols=102 Identities=10% Similarity=0.010 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-------CCC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDS-------SKN-------GISLFSAYNRVIQYLAKADKLEMSYCCFKKVL 262 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~-------~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (827)
...+......+.+.|++++|+..|.+.+..- .+. .+.+..+|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3466777788888888888888888887750 000 03345667777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 263 DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 263 ~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
+..+. +...|..+..+|...|++++|.+.|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 65543 6667777777777777777777777777663
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.73 E-value=0.00057 Score=60.56 Aligned_cols=92 Identities=9% Similarity=0.003 Sum_probs=52.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC---HHHHHH
Q 003353 202 MLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLF---SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID---TQSYNV 275 (827)
Q Consensus 202 ~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~n~ 275 (827)
.+...+.+.|++++|...|+++.+.. +.+. .++..+..+|.+.|++++|...|++..+..+. + ..++..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 34455556666666666666666544 3333 45555666666666666666666666554332 2 444555
Q ss_pred HHHHHHHcCChhHHHHHHHHhHh
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+..++...|++++|...|++..+
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666666666554
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.72 E-value=0.00021 Score=65.83 Aligned_cols=130 Identities=11% Similarity=-0.050 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----Cch--H
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSAGL-RPG----LSTYTALLTLLAKRKLVDVAAKILLEMKTMGY----SVD--V 515 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~~~--~ 515 (827)
++..+...|...|++++|...+++..+..- .++ ..++..+...+...|++++|.+.++++.+... .+. .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444455555555555555554443100 011 12444455555556666666666655543211 111 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGSS----GIRTN-NFIVRQLFESCMKNALYESAKPLLETYV 576 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 576 (827)
.+..+...|...|++++|.+.+++..+. +..+. ...+..+...|...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444555556666666666666555421 11111 2234444455555566666666555544
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.69 E-value=0.0002 Score=65.95 Aligned_cols=96 Identities=15% Similarity=0.070 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCch--H
Q 003353 447 TYSCLLEMHASSGQVDSAMKLYNSMTSA----GLRP-GLSTYTALLTLLAKRKLVDVAAKILLEMKTM----GYSVD--V 515 (827)
Q Consensus 447 t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~~--~ 515 (827)
++..+...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|.+.+++..+. +..+. .
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4555556666666666666666665441 1001 1335556666777778888888777776643 21112 2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 516 SASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 516 ~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
.+..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456677788888888888888887654
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.67 E-value=0.00043 Score=77.08 Aligned_cols=143 Identities=8% Similarity=-0.029 Sum_probs=90.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---------------HHHHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---------------FSAYN 239 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---------------~~~~~ 239 (827)
.++++|+..|+.+.... +.....|..+...+.+.|++++|...|++.++.. +.+ ..+|.
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL----EMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----TTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----cccccCChHHHHHHHHHHHHHHH
Confidence 34445555554433321 2235678889999999999999999999999875 444 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcC
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSG 319 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g 319 (827)
.+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++.++... -+...+..+..++.+.+
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence 6666666667777777666666665443 566666666666666666666666666665321 13345555555555555
Q ss_pred CHHHHH
Q 003353 320 RLDAAI 325 (827)
Q Consensus 320 ~~~~A~ 325 (827)
+.+++.
T Consensus 400 ~~~~a~ 405 (457)
T 1kt0_A 400 EHNERD 405 (457)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.66 E-value=0.00098 Score=59.01 Aligned_cols=96 Identities=11% Similarity=-0.015 Sum_probs=81.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC---HHHH
Q 003353 165 VHITQALKVINDSDTSLSLFRWAKRQSWYVPGD---ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL---FSAY 238 (827)
Q Consensus 165 ~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~---~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~ 238 (827)
...+..+...+++++|+..|+.+.+.. +.+. ..+..+..++.+.|++++|...|+++++.. +.+ ..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~ 79 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY----PTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSTTHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC----CCCcccHHHH
Confidence 345667778899999999999998864 2233 588889999999999999999999999876 555 7789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 003353 239 NRVIQYLAKADKLEMSYCCFKKVLDSDC 266 (827)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~ 266 (827)
..+..+|.+.|++++|...|+++.+..+
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999987653
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.65 E-value=0.00011 Score=82.51 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=52.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKG 284 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g 284 (827)
..+.+.|++++|.+.|++.++.. +.+..+|..+..+|.+.|++++|++.+++..+..+. +..+|..+..+|.+.|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 33445666666666666666654 555666666666666666666666666666655432 4555555555555566
Q ss_pred ChhHHHHHHHHhHh
Q 003353 285 LPYKAFEIYESMEK 298 (827)
Q Consensus 285 ~~~~A~~~~~~m~~ 298 (827)
++++|++.|++..+
T Consensus 89 ~~~eA~~~~~~al~ 102 (477)
T 1wao_1 89 KFRAALRDYETVVK 102 (477)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555554
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.65 E-value=0.00041 Score=74.83 Aligned_cols=100 Identities=8% Similarity=-0.020 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK------------NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSD 265 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 265 (827)
..|..+...+.+.|++++|++.|++.++.... ..+.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777888889999999999999988862100 002334445555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 266 CKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 266 ~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
+. +...|..+..+|...|++++|++.|++..+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22 444455555555555555555555555444
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.63 E-value=0.00012 Score=64.33 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=60.9
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 003353 174 INDSDTSLSLFRWAKRQSWY-VPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLE 252 (827)
Q Consensus 174 ~~~~~~Al~~f~~~~~~~~~-~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (827)
.|++++|+..|+.+.+...- +.+..+|..+..++.+.|++++|+..|++.++.. |.+..++..+..+|.+.|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF----PNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHcCCHH
Confidence 46677778888877775200 2334567777777788888888888888887776 667777777888888888888
Q ss_pred HHHHHHHHhHhCC
Q 003353 253 MSYCCFKKVLDSD 265 (827)
Q Consensus 253 ~A~~~~~~m~~~g 265 (827)
+|...|++..+..
T Consensus 79 ~A~~~~~~al~~~ 91 (117)
T 3k9i_A 79 QGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 8888887776543
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.63 E-value=0.00048 Score=63.58 Aligned_cols=95 Identities=8% Similarity=-0.018 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHhHhC-
Q 003353 198 ECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGIS-------LFS-----AYNRVIQYLAKADKLEMSYCCFKKVLDS- 264 (827)
Q Consensus 198 ~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-------~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~- 264 (827)
..+......+.+.|++++|+..|++.++.. |. +.. +|+.+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~----p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS----HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 345566677778888888888888888765 32 222 6777777777777777777777766654
Q ss_pred ------CCCCCHHHH----HHHHHHHHHcCChhHHHHHHHHhH
Q 003353 265 ------DCKIDTQSY----NVLMTLFLNKGLPYKAFEIYESME 297 (827)
Q Consensus 265 ------g~~p~~~~~----n~li~~~~~~g~~~~A~~~~~~m~ 297 (827)
.+. +...| .....++...|++++|++.|++.+
T Consensus 88 n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 88 NRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 322 34455 555566666666666666666554
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.58 E-value=0.00064 Score=62.73 Aligned_cols=92 Identities=11% Similarity=-0.079 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 003353 448 YSCLLEMHASSGQVDSAMKLYNSMTSAGLRPG-------------LSTYTALLTLLAKRKLVDVAAKILLEMKTM----- 509 (827)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-------------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----- 509 (827)
+......+.+.|++++|+..|++.++ +.|+ ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 33444555566666666666666655 2333 125555556666666666666666666554
Q ss_pred --CCCchHhH----HHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 510 --GYSVDVSA----SDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 510 --g~~~~~~~----~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
.+.....| +....++...|++++|+..|++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 33222344 555555555555555555555554
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.56 E-value=0.00012 Score=64.39 Aligned_cols=89 Identities=7% Similarity=0.002 Sum_probs=62.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 003353 209 ESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYK 288 (827)
Q Consensus 209 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~ 288 (827)
..|++++|+..|++.++.+. +.+.+..++..+...|.+.|++++|+..|++..+..+. +...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHH
Confidence 35777888888888877630 01555677778888888888888888888888776654 67777777888888888888
Q ss_pred HHHHHHHhHhC
Q 003353 289 AFEIYESMEKG 299 (827)
Q Consensus 289 A~~~~~~m~~~ 299 (827)
|++.|++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888777654
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.52 E-value=0.00075 Score=72.77 Aligned_cols=138 Identities=12% Similarity=-0.002 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHH
Q 003353 236 SAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSL 315 (827)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~ 315 (827)
..+..+...+.+.|++++|+..|++..+.- ++. ...... ++.... -+.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHH-HHHHHHHHHHHHHHH
Confidence 456677888899999999999998877510 000 000000 111110 011334555566666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003353 316 AKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTAL 395 (827)
Q Consensus 316 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 395 (827)
.+.|++++|.+.++++.+.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++.+.++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666544 3445566666666666666666666666665543 224455555555555555555554
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00016 Score=62.20 Aligned_cols=96 Identities=9% Similarity=-0.052 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC------
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID------ 269 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------ 269 (827)
+...|..+...+.+.|++++|.+.|++.++.. +.+..++..+..+|.+.|++++|+..|++..+..+. +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHH
Confidence 45677778888888888888888888888876 777888888888888888888888888888876533 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003353 270 TQSYNVLMTLFLNKGLPYKAFEIYESM 296 (827)
Q Consensus 270 ~~~~n~li~~~~~~g~~~~A~~~~~~m 296 (827)
...+..+..++...|+.+.|++.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 455666666666666666665554443
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.44 E-value=0.0016 Score=60.71 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CC---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 377 MYVSLIESYAKAGKLDTALRLWDEMRIA--------GF---------RPNFGLFTMIIESHAKSGKLDIAMSIFTDMERA 439 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~---------~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 439 (827)
.+......+.+.|++++|+..|.+..+. .. ..+...|..+..+|.+.|++++|...+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555555555555555554432 00 001233444444444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003353 440 GFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTS 473 (827)
Q Consensus 440 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 473 (827)
... +...|..+..+|...|++++|...|++.++
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 211 344444444444444444444444444444
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.36 E-value=0.00043 Score=73.71 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHD 226 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~ 226 (827)
.+..+...+.+.|++++|...|++.+..
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~ 208 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY 208 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444555555566666666666665544
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.33 E-value=0.00061 Score=72.50 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=53.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHH------------------HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDE------------------CYVMLFDVLNESRDFDGMLSLFDEMVHDSS 228 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~------------------~~~~li~~l~~~g~~~~A~~l~~~m~~~~~ 228 (827)
.+..+...+++++|+..|+.+.... |+.. +|..+..++.+.|++++|+..+++.++..
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 260 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAYM---GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE- 260 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHHS---CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHh---ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3555667899999999999988753 4332 44445555555555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 003353 229 KNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDS 264 (827)
Q Consensus 229 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (827)
+.+..+|..+..+|...|++++|...|++..+.
T Consensus 261 ---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 261 ---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp ---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555443
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.31 E-value=0.0012 Score=57.49 Aligned_cols=79 Identities=11% Similarity=-0.002 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003353 179 TSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCF 258 (827)
Q Consensus 179 ~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (827)
.|+..|+.+.+.. +.+...+..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|...|
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD----PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4677777777754 4567777788888888888888888888887776 667777888888888888888888888
Q ss_pred HHhHh
Q 003353 259 KKVLD 263 (827)
Q Consensus 259 ~~m~~ 263 (827)
++..+
T Consensus 77 ~~al~ 81 (115)
T 2kat_A 77 ESGLA 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.28 E-value=0.0012 Score=57.28 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 003353 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIY 293 (827)
Q Consensus 214 ~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~ 293 (827)
++|+..|++.++.. +.+...+..+...|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|.+.|
T Consensus 2 ~~a~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQG----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35677888887776 778888888888888999999999998888876543 6778888888888888888888888
Q ss_pred HHhHh
Q 003353 294 ESMEK 298 (827)
Q Consensus 294 ~~m~~ 298 (827)
++..+
T Consensus 77 ~~al~ 81 (115)
T 2kat_A 77 ESGLA 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.26 E-value=0.00054 Score=63.12 Aligned_cols=68 Identities=10% Similarity=-0.110 Sum_probs=32.9
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChh----------HHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 003353 175 NDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFD----------GMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244 (827)
Q Consensus 175 ~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~----------~A~~l~~~m~~~~~~~~~~~~~~~~~li~~ 244 (827)
+.+++|++.++.+.+.+ +.+...|..+..++.+.++++ +|+..|++.++.. |.+..+|..+..+
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld----P~~~~A~~~LG~a 89 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID----PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC----cCcHHHHHHHHHH
Confidence 34445555555555543 344555555555555555433 4444444444444 4444444444444
Q ss_pred HHHc
Q 003353 245 LAKA 248 (827)
Q Consensus 245 ~~~~ 248 (827)
|.+.
T Consensus 90 y~~l 93 (158)
T 1zu2_A 90 YTSF 93 (158)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.23 E-value=0.0026 Score=52.03 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
...+..+...+.+.|++++|...|++.++.. +.+..++..+...|.+.|++++|...|++..+..+. +...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 4566666677777777777777777777665 566677777777777777777777777777665433 55556555
Q ss_pred HHHHHH
Q 003353 277 MTLFLN 282 (827)
Q Consensus 277 i~~~~~ 282 (827)
..++.+
T Consensus 84 ~~~~~~ 89 (91)
T 1na3_A 84 GNAKQK 89 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555544
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.21 E-value=0.0056 Score=68.20 Aligned_cols=123 Identities=10% Similarity=0.034 Sum_probs=73.6
Q ss_pred HHHcCCHhHHHHHHHHHHHC---CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-chH--hHHH
Q 003353 455 HASSGQVDSAMKLYNSMTSA---GLRP---G-LSTYTALLTLLAKRKLVDVAAKILLEMKTM-----GYS-VDV--SASD 519 (827)
Q Consensus 455 ~~~~g~~~~A~~l~~~m~~~---g~~p---d-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~-~~~--~~~~ 519 (827)
+...|++++|+.++++.++. -+.| + ..+++.|..+|...|++++|+.+++++++. |.. |++ +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777766642 1222 2 236777777777788888887777776542 332 332 5667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh-----CCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 520 VLMVYIKDGSVDHALRWLRFMGS-----SGI-RTNN-FIVRQLFESCMKNALYESAKPLLETYVE 577 (827)
Q Consensus 520 li~~y~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 577 (827)
|...|..+|++++|+.++++..+ .|. .|+. .+...+..++...|.+++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776653 121 1222 2334444455566666666666666644
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.19 E-value=0.0014 Score=72.96 Aligned_cols=127 Identities=7% Similarity=-0.000 Sum_probs=71.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCC-CC-HHHHHH
Q 003353 207 LNESRDFDGMLSLFDEMVHDSSK----NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD-----SDCK-ID-TQSYNV 275 (827)
Q Consensus 207 l~~~g~~~~A~~l~~~m~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~~~n~ 275 (827)
+...|++++|+.++++.++.... +.+....+++.|..+|...|++++|+.++++..+ .|.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678888888888777664321 1122345677777777777777777777766543 2221 22 245666
Q ss_pred HHHHHHHcCChhHHHHHHHHhHh-----CCcc-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003353 276 LMTLFLNKGLPYKAFEIYESMEK-----GECS-LD-GSTYELMIPSLAKSGRLDAAIKLFQEMKE 333 (827)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~-----~g~~-pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 333 (827)
|...|...|++++|+.++++..+ .|.. |+ ..+.+.+-.++...+.+++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666766666666666542 1211 11 22334444455555555666655555543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.13 E-value=0.0074 Score=54.55 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHHHH
Q 003353 319 GRLDAAIKLFQEMKE 333 (827)
Q Consensus 319 g~~~~A~~~~~~m~~ 333 (827)
++.++|.+.|++..+
T Consensus 111 ~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 111 KNEKQAVKTFEKACR 125 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 333344444333333
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.10 E-value=0.0011 Score=61.05 Aligned_cols=115 Identities=12% Similarity=0.039 Sum_probs=95.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 207 LNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKL----------EMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 207 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
..+.+.+++|.+.++..++.. |.+..+|+.+..++.+.+++ ++|+..|++..+..+. +..+|+.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~----P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 356678999999999999998 99999999999999998875 5999999999998766 88899999
Q ss_pred HHHHHHcC-----------ChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003353 277 MTLFLNKG-----------LPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 277 i~~~~~~g-----------~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (827)
..+|...| ++++|++.|++.++ +.|+...|...+...- +|.+++-.+...
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~------ka~el~~~~~~~ 147 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA------KAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH------hCHhccCccccc
Confidence 99998874 89999999999998 5688888888877643 344544444433
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.09 E-value=0.01 Score=53.57 Aligned_cols=55 Identities=11% Similarity=-0.051 Sum_probs=22.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 003353 346 LVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAK----AGKLDTALRLWDEMRI 403 (827)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 403 (827)
|...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|++.|++..+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG 89 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc
Confidence 3333333344444444444444332 33334444444443 3444444444444443
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0011 Score=56.67 Aligned_cols=61 Identities=20% Similarity=0.029 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 482 TYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 482 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
.+..+...+...|++++|.+.++++++..+.....+..+..+|.+.|++++|++.+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444445555555555555555555554443334455555555555555555555555554
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.85 E-value=0.004 Score=52.62 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
.+...+..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD----PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777777777777777777777777766 66666777777777777777777777776654
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.80 E-value=0.012 Score=47.94 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEM 366 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m 366 (827)
+..+..++.+.|++++|...+++.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 46 WYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.66 E-value=0.0073 Score=50.94 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003353 232 ISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK 298 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 298 (827)
|.+..++..+...|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667888888888888999999999999888877654 667888888888888999988888888765
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.52 E-value=0.11 Score=61.73 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003353 379 VSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFLPTPSTYSCLLEMHASS 458 (827)
Q Consensus 379 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 458 (827)
..++..+.+.|..++|+++.++-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555666666666665543211 1123345567777776664332 2556677777777777
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHH
Q 003353 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLR 538 (827)
Q Consensus 459 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~ 538 (827)
|+++.|.+.|.++.+ |..+...+...|+.+...++-+.+...|. +.....+|.+.|++++|++++.
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-----~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-----FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-----hHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777776643 23344444446666655555444444321 2222334555666666665443
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.14 E-value=0.011 Score=49.27 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=39.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 003353 204 FDVLNESRDFDGMLSLFDEMVHDSSKNGISLFS-AYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266 (827)
Q Consensus 204 i~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 266 (827)
...+.+.|++++|...|++.++.. +.+.. ++..+..+|.+.|++++|...|++..+..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 445566677777777777776665 55666 666677777777777777777777666543
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.99 E-value=0.2 Score=52.72 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003353 303 LDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMY 378 (827)
Q Consensus 303 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 378 (827)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|+.++|.+.|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 455566666555555677777777777766664 55556666666666677777777777666654 3444444
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.82 E-value=0.21 Score=52.51 Aligned_cols=142 Identities=12% Similarity=0.061 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHHHH--hc---CChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc---C-----CHHHHHHHHHH
Q 003353 194 VPGDECYVMLFDVLN--ES---RDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKA---D-----KLEMSYCCFKK 260 (827)
Q Consensus 194 ~p~~~~~~~li~~l~--~~---g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~---g-----~~~~A~~~~~~ 260 (827)
+.+..+|...+++.. .. ....+|..+|++.++.. |....+|..+..+|.-. + ........++.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD----P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS----PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 345556665554443 22 33478999999999887 77777777666665421 1 01111112222
Q ss_pred hH--hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003353 261 VL--DSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRP 338 (827)
Q Consensus 261 m~--~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 338 (827)
.. ..+ ..+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.++++...+ |
T Consensus 267 ~~a~~~~-~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P 341 (372)
T 3ly7_A 267 IVTLPEL-NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--P 341 (372)
T ss_dssp HHTCGGG-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C
T ss_pred HHhcccC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 11 122 3588889888887888899999999999999865 788888888899999999999999999999864 5
Q ss_pred CHHHHH
Q 003353 339 SFNIFA 344 (827)
Q Consensus 339 ~~~t~~ 344 (827)
...||.
T Consensus 342 ~~~t~~ 347 (372)
T 3ly7_A 342 GANTLY 347 (372)
T ss_dssp SHHHHH
T ss_pred CcChHH
Confidence 556654
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.69 E-value=0.2 Score=59.48 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003353 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESME 297 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~ 297 (827)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34455555555554322 244555556666666666666655555553
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.51 E-value=0.027 Score=46.82 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=64.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 003353 167 ITQALKVINDSDTSLSLFRWAKRQSWYVPGDE-CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYL 245 (827)
Q Consensus 167 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~-~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~ 245 (827)
.+..+...+++++|+..|+.+.+.. +.+.. .|..+..++.+.|++++|.+.|++.++.. +.+..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~----- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN----PDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTSTHHHHH-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCcHHHHHH-----
Confidence 4566778899999999999999875 45677 89999999999999999999999999987 666665522
Q ss_pred HHcCCHHHHHHHHHHhH
Q 003353 246 AKADKLEMSYCCFKKVL 262 (827)
Q Consensus 246 ~~~g~~~~A~~~~~~m~ 262 (827)
+.+.++...|++..
T Consensus 75 ---~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDM 88 (99)
T ss_dssp ---HHHHHHHHHHCCTT
T ss_pred ---HHHHHHHHHHHHHh
Confidence 44556666665543
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.47 E-value=0.11 Score=43.12 Aligned_cols=69 Identities=10% Similarity=-0.045 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 003353 194 VPGDECYVMLFDVLNESRD---FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266 (827)
Q Consensus 194 ~p~~~~~~~li~~l~~~g~---~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 266 (827)
+.++..+..+..++...++ .++|..++++.++.. |.++.+...+...+.+.|++++|+..|+++.+..+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4667777777777754443 688888888888877 78888888888888888888888888888887653
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.46 E-value=0.072 Score=58.19 Aligned_cols=84 Identities=7% Similarity=-0.076 Sum_probs=54.4
Q ss_pred cCCHhHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-chH--hHHHHHH
Q 003353 458 SGQVDSAMKLYNSMTS---AGLRPG----LSTYTALLTLLAKRKLVDVAAKILLEMKT-----MGYS-VDV--SASDVLM 522 (827)
Q Consensus 458 ~g~~~~A~~l~~~m~~---~g~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-~~~--~~~~li~ 522 (827)
.|++++|+.++++.++ .-+.|+ ..+++.|..+|...|++++|+.+++++++ .|.. |++ +++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4667777777776654 112222 24677777778888888888888777654 2332 332 5667777
Q ss_pred HHHHcCCHHHHHHHHHHHh
Q 003353 523 VYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 523 ~y~~~g~~~~A~~~~~~m~ 541 (827)
.|..+|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777665
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.35 E-value=0.033 Score=60.92 Aligned_cols=87 Identities=7% Similarity=0.045 Sum_probs=41.6
Q ss_pred cCChhHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCC-CC-HHHHHHHHH
Q 003353 210 SRDFDGMLSLFDEMVHDSSK----NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD-----SDCK-ID-TQSYNVLMT 278 (827)
Q Consensus 210 ~g~~~~A~~l~~~m~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~~~n~li~ 278 (827)
.|++++|+.++++.++.... +.+....+++.|..+|...|++++|+.++++..+ .|.. |+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666666665543211 1111233555566666666666666655555432 1211 11 133455555
Q ss_pred HHHHcCChhHHHHHHHHh
Q 003353 279 LFLNKGLPYKAFEIYESM 296 (827)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m 296 (827)
.|...|++++|+.++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 555555555555555444
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.28 E-value=0.16 Score=55.36 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=56.2
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-chH--h
Q 003353 452 LEMHASSGQVDSAMKLYNSMTSA---GLRPG----LSTYTALLTLLAKRKLVDVAAKILLEMKTM-----GYS-VDV--S 516 (827)
Q Consensus 452 i~~~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~-~~~--~ 516 (827)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++++. |.. |++ +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667788888888777753 12222 246677777777788888888777766542 322 222 4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 517 ASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 517 ~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
++.|...|...|++++|+.+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5666666666777766666666554
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.16 E-value=0.08 Score=57.84 Aligned_cols=61 Identities=15% Similarity=0.007 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhC-----C-ccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 272 SYNVLMTLFLNKGLPYKAFEIYESMEKG-----E-CSLD-GSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 272 ~~n~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|...|...|++++|..+++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4445555555555555555555544321 1 1111 2345555555555555555555555544
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.15 E-value=0.8 Score=46.20 Aligned_cols=93 Identities=11% Similarity=0.138 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCH
Q 003353 321 LDAAIKLFQEMKERNFRPS---FNIFASLVDSMGKA-----GRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKA-GKL 391 (827)
Q Consensus 321 ~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~ 391 (827)
...|...+++..+.+ |+ -..|..+...|.+. |+.++|.+.|++.++.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 456777777777754 33 56788888888884 88888888888888765333467777778888874 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHH
Q 003353 392 DTALRLWDEMRIAGFR--PNFGLFTM 415 (827)
Q Consensus 392 ~~A~~l~~~m~~~g~~--pd~~t~~~ 415 (827)
++|.+.+++....... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888887666 66544443
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.01 E-value=1.7 Score=40.27 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=62.6
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHH
Q 003353 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLD 322 (827)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 322 (827)
....++|+++.|.++.+.+ -+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445667777777776654 2566777777777777777777777776653 334444455566666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003353 323 AAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYME 365 (827)
Q Consensus 323 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 365 (827)
...++-+....+|- ++.....+.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66655555555542 44445555566777777766644
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.67 E-value=0.77 Score=40.18 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003353 353 AGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSI 432 (827)
Q Consensus 353 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~ 432 (827)
.|.+++..++..+.... .+..-||-+|.-....-+-+-..++++..-+- .| ...+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHHH
Confidence 45566666666666542 24455555555555555555555555444321 11 1123333333333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003353 433 FTDMERAGFLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYS 512 (827)
Q Consensus 433 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 512 (827)
+-.+-. +.......++.+...|+-++-.+++.++.. ..+|++.....+..+|.+.|+..+|.+++.++-+.|.+
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 322211 333444555666667777777777766433 24566666666777777777777777777777766654
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.24 E-value=0.33 Score=43.99 Aligned_cols=80 Identities=18% Similarity=0.054 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-C-CchHhHHHHHHHHHHcCCHHHHHHH
Q 003353 462 DSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRK---LVDVAAKILLEMKTMG-Y-SVDVSASDVLMVYIKDGSVDHALRW 536 (827)
Q Consensus 462 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g---~~~~A~~l~~~m~~~g-~-~~~~~~~~li~~y~~~g~~~~A~~~ 536 (827)
..+.+-|.+..+.|. ++..+.-.+..++++.+ +++++..++++..+.. + .....++.|..+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 444555555555443 45555555666666666 5557777777777654 1 1123566666677777777777777
Q ss_pred HHHHhh
Q 003353 537 LRFMGS 542 (827)
Q Consensus 537 ~~~m~~ 542 (827)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777765
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.09 E-value=0.44 Score=48.07 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=62.1
Q ss_pred HhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCc-hHhHHHHHHHHHHc-CCH
Q 003353 461 VDSAMKLYNSMTSAGLRPG---LSTYTALLTLLAK-----RKLVDVAAKILLEMKTMGYSV-DVSASDVLMVYIKD-GSV 530 (827)
Q Consensus 461 ~~~A~~l~~~m~~~g~~pd---~~t~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~~-~~~~~~li~~y~~~-g~~ 530 (827)
..+|...+++.++ +.|+ ...|..+...|.+ -|+.++|++.|++.++.++.- -.........++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4566667777776 5666 4467777777777 378888888888888766643 23555666666663 778
Q ss_pred HHHHHHHHHHhhCCCC--CCHHHHH
Q 003353 531 DHALRWLRFMGSSGIR--TNNFIVR 553 (827)
Q Consensus 531 ~~A~~~~~~m~~~~~~--p~~~~~~ 553 (827)
++|.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888777666 6655444
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.88 E-value=0.37 Score=39.73 Aligned_cols=68 Identities=6% Similarity=-0.044 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCC
Q 003353 232 ISLFSAYNRVIQYLAKADK---LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGE 300 (827)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g 300 (827)
+.+...+..+..++...++ .++|..++++..+..+. ++.+...+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667777777777765544 67888888888776655 77777777788888888888888888887653
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.74 E-value=3.6 Score=38.13 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 003353 377 MYVSLIESYAKAGKLDTALRLWD 399 (827)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~l~~ 399 (827)
.|..|.....+.|+++-|.+.|.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 33333333333333333333333
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.16 E-value=0.6 Score=39.24 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 003353 196 GDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSK---NGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDC 266 (827)
Q Consensus 196 ~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 266 (827)
+...+..+...+.+.|+++.|...|+...+.... .......++..+..+|.+.|++++|...+++..+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 4555667777788888888888888877764210 0134566777777777888888888887777776543
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.06 E-value=0.45 Score=43.13 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 195 PGDECYVMLFDVLNESR---DFDGMLSLFDEMVHDSSKNGI-SLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g---~~~~A~~l~~~m~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
++..+...+.-++++.+ ++++++.++++..+... | .....+-.|.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~---p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS---KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---ccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444 33344444444444320 1 1222333333344444444444444444443
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.86 E-value=4.6 Score=35.40 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGF 406 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 406 (827)
.+..++.+...|+-++-.+++.++... .+|+....-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333444444444444444444443221 134444444444455555555555555544444443
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.72 E-value=0.64 Score=39.07 Aligned_cols=65 Identities=11% Similarity=0.037 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003353 517 ASDVLMVYIKDGSVDHALRWLRFMGSSG------IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAK 581 (827)
Q Consensus 517 ~~~li~~y~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 581 (827)
...|...+.+.|+++.|..+|+.+.+.- -.+...++..+..+|.+.|+++.|+..++++.+..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3456666667777777777776665421 1234556667777777777777777777777765444
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.14 E-value=29 Score=41.03 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=87.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHHH
Q 003353 421 AKSGKLDIAMSIFTDMERAGFLPTP--STYSCLLEMHASSGQVDSAMKLYNSMTSAGL--R-----PGLSTYTALLTLLA 491 (827)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~-----pd~~t~~~li~~~~ 491 (827)
...|+.+++..+++.....+-..+. ..-..+.-+....|..+++..++...+...- . +....-.++.-+++
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 3455666666655544431101122 2233333445555555567766666554210 0 10111122222232
Q ss_pred hcCC-HHHHHHHHHHHHHCCCCch--HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--HcCCHH
Q 003353 492 KRKL-VDVAAKILLEMKTMGYSVD--VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNNFIVRQLFESCM--KNALYE 566 (827)
Q Consensus 492 ~~g~-~~~A~~l~~~m~~~g~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~ 566 (827)
..|. -+++.+.+..++...-... ....+|...|.-.|+-+....++..+.+.. +..+...+.-+++ ..|+.+
T Consensus 465 ~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 465 AMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp STTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGG
T ss_pred hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChH
Confidence 2332 2345555555554322110 112233444555667666667776665432 2333333333333 567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHhhc
Q 003353 567 SAKPLLETYVESAAKVDLVLYT---SVLAHLVRCQDEQNERHLMAILSAT 613 (827)
Q Consensus 567 ~A~~~~~~m~~~g~~pd~~t~~---~ll~a~~~~g~~~~a~~l~~~l~~~ 613 (827)
.+..+.+.+... .. ..+-|. ++.-+|+..|+......++..+...
T Consensus 542 ~~~~li~~L~~~-~d-p~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 542 LADDLITKMLAS-DE-SLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp GGHHHHHHHHHC-SC-HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-CC-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC
Confidence 777777777653 12 222333 2334566677776666677766543
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.36 E-value=2.6 Score=37.79 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCchH--hHHHHHH------HHHHcCCHHHHHHHHHHHhhCC
Q 003353 479 GLSTYTALLTLLAKRKLV------DVAAKILLEMKTMGYSVDV--SASDVLM------VYIKDGSVDHALRWLRFMGSSG 544 (827)
Q Consensus 479 d~~t~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~~~~--~~~~li~------~y~~~g~~~~A~~~~~~m~~~~ 544 (827)
|..+|-..+....+.|+. ++..++|+++... ++|+. .|..-|. .+...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445666666666666666 6666777766653 33321 1111111 2234578888888888886543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003353 545 IRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585 (827)
Q Consensus 545 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 585 (827)
-.- ..+|....+--.+.|+...|.+++.+.+..+++|...
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 222 5555555444557888888888888888888775433
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.09 E-value=3 Score=37.38 Aligned_cols=59 Identities=8% Similarity=-0.026 Sum_probs=35.8
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHH
Q 003353 459 GQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSAS 518 (827)
Q Consensus 459 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 518 (827)
+++++|.++|+.+++.+-+- ...|.....--.+.|++..|.+++...+..+++|.....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 66777777777776532222 445554455455677777777777777777666664433
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.55 E-value=46 Score=39.43 Aligned_cols=221 Identities=10% Similarity=-0.051 Sum_probs=116.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 003353 385 YAKAGKLDTALRLWDEMRIAGFRPNFGL--FTMIIESHAKSGKLDIAMSIFTDMERAGF-------LPTPSTYSCLLEMH 455 (827)
Q Consensus 385 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~t~~~li~~~ 455 (827)
....|+.++++.+++.....+-..+..+ -..+.-+...+|..+++..++.......- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3445666677666665443211123232 23333445566766678887777664311 01122223333333
Q ss_pred HHcCC-HhHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhH--HHHHHHHHHcC
Q 003353 456 ASSGQ-VDSAMKLYNSMTSAGLRPGLST--YT--ALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSA--SDVLMVYIKDG 528 (827)
Q Consensus 456 ~~~g~-~~~A~~l~~~m~~~g~~pd~~t--~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~--~~li~~y~~~g 528 (827)
+-.|. -+++.+.+..+... .+..+ .. ++...+...|+-+....++..+.+.. .+... ..+..++...|
T Consensus 464 a~~GS~~eev~e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCC
Confidence 33443 24667777776653 22221 12 22223446678888888888777642 23222 33344555778
Q ss_pred CHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003353 529 SVDHALRWLRFMGSSGIRTNNF--IVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHL 606 (827)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l 606 (827)
+.+.+..+.+.+.... .|... ...++.-+|+..|+.....+++..+.+. ...++.-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888877532 22211 1223344567778877777788888764 222333333333355556776666666
Q ss_pred HHHHhh
Q 003353 607 MAILSA 612 (827)
Q Consensus 607 ~~~l~~ 612 (827)
++.+..
T Consensus 617 v~~L~~ 622 (963)
T 4ady_A 617 VQLLSK 622 (963)
T ss_dssp TTTGGG
T ss_pred HHHHHh
Confidence 655544
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.47 E-value=35 Score=36.88 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCchH---h
Q 003353 449 SCLLEMHASSGQVDSAMKLYNSMTSA--GLRPG---LSTYTALLTLLAKRKLVDVAAKILLEMKT----MGYSVDV---S 516 (827)
Q Consensus 449 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~~~~---~ 516 (827)
..|...|...|++.+|.+++.++... |.... ...+...+..|...+++..|..++..+.. ....|+. .
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45667788888888888888877642 22221 23556667788888888888888887642 2233332 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 517 ASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 517 ~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
+...+..+...+++.+|.+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45566777888888888888877753
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.13 E-value=2.6 Score=36.70 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 517 ASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 517 ~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
.+.|..++.+.|++++|.+.++.++
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.41 E-value=2.4 Score=36.88 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=8.7
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 003353 314 SLAKSGRLDAAIKLFQEMKE 333 (827)
Q Consensus 314 ~~~~~g~~~~A~~~~~~m~~ 333 (827)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444443
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.36 E-value=40 Score=36.42 Aligned_cols=94 Identities=10% Similarity=0.089 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEMKER--NFRPS---FNIFASLVDSMGKAGRLDTSMKVYMEMQG----CGHRPS--APM 377 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~ 377 (827)
..|...+-..|++.+|.+++..+... |.... ...+...+..|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44556666677777777777666432 11111 23445555666666666666666665431 111122 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
|..++..+...+++.+|-+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555555666666665555543
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.97 E-value=3.9 Score=47.40 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHhC------CccC-CHH---
Q 003353 239 NRVIQYLAKADK-LEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL-PYKAFEIYESMEKG------ECSL-DGS--- 306 (827)
Q Consensus 239 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p-d~~--- 306 (827)
..++..+...|+ ++.|..+|+++.+..+.-+......+|..+.+.++ --+|.++..+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444444444555 57788888888775433222222333333322221 22355555544321 1111 111
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 307 -------TYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367 (827)
Q Consensus 307 -------t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 367 (827)
....=.+-|...|+++.|+++-++....- +.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11122334566888999999988888764 5667889999999999999999988887764
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.66 E-value=7.4 Score=41.47 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003353 273 YNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKE-----RNFRPSFNIFA 344 (827)
Q Consensus 273 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 344 (827)
...++..+...|++++|+..+..+... -+.+...|..+|.++.+.|+..+|.+.|+...+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445666777778888877777777654 233666777888888888888888877776543 47777766543
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.23 E-value=3.3 Score=44.19 Aligned_cols=67 Identities=6% Similarity=-0.022 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh-----CCccCCHHH
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK-----GECSLDGST 307 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t 307 (827)
.++..+...|++++|...+..+....+- +...|-.+|.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444555555555555555555444332 445555555555555555555555555432 255555544
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.46 E-value=8.3 Score=44.65 Aligned_cols=44 Identities=9% Similarity=-0.018 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCceehhhhhhhhcc
Q 003353 658 FVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLD 703 (827)
Q Consensus 658 ~~n~Li~~l~k~G~~~~A~~v~~~~~~~~~~p~~~~~~~~i~w~~~ 703 (827)
-|..|+...+|.+.++||.+.|+..+... -+...+..++.-+.+
T Consensus 615 EWEiLGlla~RL~h~~EA~~a~~~~l~~R--Fs~ka~~kLLeiY~~ 658 (754)
T 4gns_B 615 EWELLGLIMLRTWHWEDAVACLRTSIVAR--FDPVSCQQLLKIYLQ 658 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHh
Confidence 48999999999999999999999988654 344445556555544
No 243
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.95 E-value=0.00014 Score=77.63 Aligned_cols=231 Identities=9% Similarity=0.034 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 003353 197 DECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVL 276 (827)
Q Consensus 197 ~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~l 276 (827)
+..|..+..+..+.++..+|++-| ++ ..|+..|..++.+..+.|.+++-+..+.-.++.. .+...=+.|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---Ik------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteL 122 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 122 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---Hh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHH
Confidence 345666666666666665554433 11 3344555556666666666666665555444332 122333455
Q ss_pred HHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003353 277 MTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAGRL 356 (827)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 356 (827)
+-+|++.++..+..+.+ -.||..-...+.+-|...|.++.|.-+|..+. -|..|..++.+.|++
T Consensus 123 i~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~y 186 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGG
T ss_pred HHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHH
Confidence 66666665544322221 12444444455555555555555554443321 133344445555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 357 DTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDM 436 (827)
Q Consensus 357 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 436 (827)
..|.+.-++ ..++.||-.+-.+|...+.+.-|.-.--.+.-. +| -...++..|...|.+++-+.+++.-
T Consensus 187 q~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 555433221 225567777777777777766554443333321 11 1233566677777777777777665
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 003353 437 ERAGFLPTPSTYSCLLEMHASSGQVDSAMKL 467 (827)
Q Consensus 437 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 467 (827)
... -....-.|+-|.-.|++- +.++.++-
T Consensus 256 lgl-ErAHmGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 256 LGL-ERAHMGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp TTS-TTCCHHHHHHHHHHHHSS-CTTHHHHH
T ss_pred hCC-CchhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 521 123566666666666654 33443333
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.63 E-value=29 Score=42.68 Aligned_cols=150 Identities=12% Similarity=0.120 Sum_probs=103.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh--------------------C
Q 003353 240 RVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEK--------------------G 299 (827)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~--------------------~ 299 (827)
.++..+.+.+..+.|.++..-... +...--.+..+|...|++++|.+.|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 466667777777777766555443 444434556677778888888888865421 0
Q ss_pred --CccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003353 300 --ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSF----NIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRP 373 (827)
Q Consensus 300 --g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 373 (827)
....-..-|.-++..+-+.+.++.+.++-..+.+..-+.+. ..|..+.+++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 01123445788888999999999999888877765322222 2578889999999999999999988887644
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHH
Q 003353 374 SAPMYVSLIESYAKAGKLDTALR 396 (827)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~ 396 (827)
-......++..+|..|..+.-..
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhC
Confidence 35677888888888887766543
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.14 E-value=32 Score=42.41 Aligned_cols=150 Identities=11% Similarity=0.067 Sum_probs=109.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC--------------
Q 003353 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKER----NF-------------- 336 (827)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-------------- 336 (827)
.++..+...+.++.|.++..-... +...--.+..+|...|++++|.+.|.+.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 466778888999888776654433 4554456778899999999999999775311 00
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003353 337 ----RPSFNIFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSA----PMYVSLIESYAKAGKLDTALRLWDEMRIAGFRP 408 (827)
Q Consensus 337 ----~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 408 (827)
..-..-|..++..+.+.+.++.+.++-....+.....+. ..|..+..++...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 011234778899999999999999888877653322222 26888999999999999999999988876554
Q ss_pred CHHHHHHHHHHHHhcCChhHHHH
Q 003353 409 NFGLFTMIIESHAKSGKLDIAMS 431 (827)
Q Consensus 409 d~~t~~~li~~~~~~g~~~~A~~ 431 (827)
...+..||..+|..|..+.-..
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhC
Confidence 4667888888888888766543
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.48 E-value=1.3e+02 Score=33.86 Aligned_cols=115 Identities=10% Similarity=-0.045 Sum_probs=56.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003353 425 KLDIAMSIFTDMERAGFLPTPSTYSCLLE----MHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAA 500 (827)
Q Consensus 425 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~----~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~ 500 (827)
+.+.|...+....+... .+......+-. .+...+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 55667776666654321 12222222222 2222332445555555544422 23322333333334557777777
Q ss_pred HHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003353 501 KILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMGS 542 (827)
Q Consensus 501 ~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 542 (827)
..|..|.......+...+-+..++.+.|+.++|..+|+.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 777666543222222334455566667777777777776653
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.57 E-value=9.7 Score=37.76 Aligned_cols=116 Identities=11% Similarity=0.040 Sum_probs=75.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CCHHHHHHHHHHHHH
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCK--IDTQSYNVLMTLFLN 282 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~n~li~~~~~ 282 (827)
..+.+.|++++|++....-++.. |.|...-..++..+|-.|++++|.+-++...+..+. |-...|..+|.+=..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~----P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS----PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH
Confidence 45678899999999998888887 889999999999999999999999988888765433 222344444443211
Q ss_pred cCChhHHHHHHHHhHhCCc-----cCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHc
Q 003353 283 KGLPYKAFEIYESMEKGEC-----SLDGSTYELMIPSL--AKSGRLDAAIKLFQEMKER 334 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~-----~pd~~t~~~li~~~--~~~g~~~~A~~~~~~m~~~ 334 (827)
=.+....+- .....-...++.+. ...|+.++|.++-+++.+.
T Consensus 81 ----------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 ----------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 111111111 11222334444444 3458888888888877654
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=69.85 E-value=17 Score=30.00 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 529 SVDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592 (827)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 592 (827)
+.=+..+-++.+...++.|++.++.+.+.+|.+..++..|.++|+-.+.+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444666777777777888888888888888888888888888888776542 222345666553
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=68.45 E-value=27 Score=28.78 Aligned_cols=59 Identities=7% Similarity=0.192 Sum_probs=36.2
Q ss_pred HHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003353 288 KAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347 (827)
Q Consensus 288 ~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 347 (827)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.+- .+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 455555666666666777777777777777777777777777666442 22233455444
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.88 E-value=1.3e+02 Score=30.84 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHH
Q 003353 343 FASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRL----WDEMRIAGFRPNFGLFTMIIE 418 (827)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~li~ 418 (827)
|.++..-|.+.+++++|.+++..-- ..+.+.|+...|-++ ++-..+.++++|.....-++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4445555667777777777654322 123344554443333 344455666667666666666
Q ss_pred HHHhcCChh-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 003353 419 SHAKSGKLD-IAMSIFTDMER----AG--FLPTPSTYSCLLEMHASSGQVDSAMKLY 468 (827)
Q Consensus 419 ~~~~~g~~~-~A~~~~~~m~~----~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~ 468 (827)
.+.....-+ .=..+.+++.+ .| ..-|......+...|.+.+++.+|..-|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 555443221 11222233321 11 1224455555556666666666665555
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=63.93 E-value=34 Score=28.10 Aligned_cols=51 Identities=12% Similarity=0.041 Sum_probs=24.7
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 243 QYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
..+...|++++|..+.+.+. -||...|-+|-.. +.|..+++..-+.++...
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 33445555555555544333 3555555544332 345555555555444444
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=63.78 E-value=36 Score=30.97 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=38.6
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003353 168 TQALKVINDSDTSLSLFRWAKRQSWYVPGD-------ECYVMLFDVLNESRDFDGMLSLFDEMVHD 226 (827)
Q Consensus 168 ~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~-------~~~~~li~~l~~~g~~~~A~~l~~~m~~~ 226 (827)
.+.+...+.++.|.-+.+.+.......|+. .++..+.+++...|+|..|...|++.++.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444555667777666665543322112331 36677888999999999999999997653
No 253
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=63.34 E-value=0.029 Score=60.32 Aligned_cols=216 Identities=13% Similarity=0.113 Sum_probs=109.5
Q ss_pred hhHHHHhhhcccccccccCCccccCCCCCccccccCcCCCCCCHHHHHHHHHHHHcCCCCccHHHHhhhCCCC---CCHH
Q 003353 89 WTEEIEYLDESGSVIYTGKGIRSVEPGFDDHVMVGGIKKPFLNASAVAKIVEVVNRWKWGPELETQLDKLQFV---PKMV 165 (827)
Q Consensus 89 w~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~---p~~~ 165 (827)
|.++-++....|.+. +++.+|-++- +++.+..++....+.+.-+++-..|.-.... |...
T Consensus 57 Ws~LgkAqL~~~~v~-------eAIdsyIkA~----------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID 119 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVK-------EAIDSYIKAD----------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE 119 (624)
T ss_dssp SSSHHHHTTTSSSCT-------TTTTSSCCCS----------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT
T ss_pred HHHHHHHHHccCchH-------HHHHHHHhCC----------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH
Confidence 777777777777776 9998885542 2233333344444333333444333322211 1111
Q ss_pred -HHHHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 003353 166 -HITQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQY 244 (827)
Q Consensus 166 -~~~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~ 244 (827)
.++-++.++++..+-.++.. .|+..-...+.+-|...|.++.|.-+|..+.. |..|...
T Consensus 120 teLi~ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN------------~akLAst 179 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------------FGRLAST 179 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC------------CTTTSSS
T ss_pred HHHHHHHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc------------HHHHHHH
Confidence 12223333333222111111 23333444555555555555555555544322 1223444
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHH
Q 003353 245 LAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAA 324 (827)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A 324 (827)
+.+.|+++.|.+.-++. -++.||-.+-.+|...+.+.-|.-.--.++-. ..-...++..|-+.|.+++-
T Consensus 180 LV~L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~EL 248 (624)
T 3lvg_A 180 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEEL 248 (624)
T ss_dssp SSSCSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTS
T ss_pred HHHHHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHH
Confidence 45555555554332211 35567877777888777776654443333321 11123455567777888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003353 325 IKLFQEMKERNFRPSFNIFASLVDSMGKA 353 (827)
Q Consensus 325 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 353 (827)
..+++...... ......|+-|.-.|++-
T Consensus 249 IsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 249 ITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 77777766432 45667777777777765
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.89 E-value=1.6e+02 Score=31.08 Aligned_cols=92 Identities=10% Similarity=0.006 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--C--CCchH-h--H
Q 003353 450 CLLEMHASSGQVDSAMKLYNSMTSA--GLRPG---LSTYTALLTLLAKRKLVDVAAKILLEMKTM--G--YSVDV-S--A 517 (827)
Q Consensus 450 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g--~~~~~-~--~ 517 (827)
-++..|...|++.+|.+++.++.+. .+... ...+..-+..|...+++.++...+...... . .+|.. . .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4677788888888888888877763 11111 224555566778888888888888777543 1 22221 1 1
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHh
Q 003353 518 SDVLMVYI-KDGSVDHALRWLRFMG 541 (827)
Q Consensus 518 ~~li~~y~-~~g~~~~A~~~~~~m~ 541 (827)
..-+..+. ..+++.+|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 12233556 6888888888877664
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=62.71 E-value=39 Score=29.49 Aligned_cols=66 Identities=8% Similarity=-0.038 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 195 PGDECYVMLFDVLNESRDF---DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~---~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
|++.+--...-++++..+. .+++.+++++.+.+. ......+-.|.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~---~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444444444433 234444444444331 12223333344444444444444444444444
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=59.45 E-value=33 Score=28.16 Aligned_cols=50 Identities=10% Similarity=-0.008 Sum_probs=23.4
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhC
Q 003353 244 YLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFEIYESMEKG 299 (827)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 299 (827)
.+...|++++|..+.+.+. -||...|-+|-.. +.|..+++..-+.++...
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 3445555555544443332 3555555544322 445555555555444444
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=58.25 E-value=70 Score=26.29 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=32.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 003353 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615 (827)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~ 615 (827)
.++...|+|++|..+.+.+ ..||.+.|-+|-. .|.|-.+++...+..+..++.
T Consensus 48 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg~ 100 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQD 100 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCCC
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCCC
Confidence 3566677777777666554 4677777766653 355666666666655544443
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=57.43 E-value=1.7e+02 Score=29.70 Aligned_cols=112 Identities=7% Similarity=0.052 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCChhHHHH----HHHHhHhCCccCCHHHHHHHH
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGLPYKAFE----IYESMEKGECSLDGSTYELMI 312 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~~~~A~~----~~~~m~~~g~~pd~~t~~~li 312 (827)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +.+-..+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344445555666666666665433211 2223344333332 233333445555555555555
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003353 313 PSLAKSGRLD-AAIKLFQEMK----ERN--FRPSFNIFASLVDSMGKAGRLDTSMKVY 363 (827)
Q Consensus 313 ~~~~~~g~~~-~A~~~~~~m~----~~g--~~p~~~t~~~li~~~~~~g~~~~A~~~~ 363 (827)
..+.....-+ .=.+++++++ +.| -..++.....+...|.+.|++.+|+..|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5544422111 1122222222 222 1235566677777777777777776655
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=56.79 E-value=99 Score=26.90 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 517 ASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 517 ~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
++.|..++.+.|++++|.+..+.+.
T Consensus 81 LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 81 LYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=56.78 E-value=36 Score=29.72 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003353 530 VDHALRWLRFMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLA 592 (827)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 592 (827)
.=+..+-++.+...++.|++.++.+.+.+|.+.+++..|..+|+-.+.+ ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3456666677777788899998888889999999999999999887654 2233445666653
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=55.53 E-value=55 Score=28.57 Aligned_cols=58 Identities=7% Similarity=0.188 Sum_probs=34.4
Q ss_pred HHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003353 289 AFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLV 347 (827)
Q Consensus 289 A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 347 (827)
..+-++.+....+.|++......+++|.+.+++..|.++|+-.+.+- .+...+|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 44445555555666777777777777777777777777776666442 23334455444
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=54.96 E-value=60 Score=29.48 Aligned_cols=119 Identities=6% Similarity=-0.071 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHhHhC--CCCCC
Q 003353 199 CYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISL-------FSAYNRVIQYLAKADKLEMSYCCFKKVLDS--DCKID 269 (827)
Q Consensus 199 ~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~ 269 (827)
++-.-+..+...|.++.|+-+.+.++.... ..++ ..++..+.+++...|++.+|...|++..+. .+..+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~--~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSN--NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhc--CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 344557788899999999998888665431 0222 236777889999999999999999986431 11111
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 270 TQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 270 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
..++..+. ....... ......+...---+..+|.+.+++++|+.+++.+.
T Consensus 100 ~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 100 SKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11111110 0000000 00112233333446677888888888888877654
No 263
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=54.10 E-value=99 Score=32.08 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCC--HHHHHHHHHHHhhCCCCCCHHHH
Q 003353 483 YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGS--VDHALRWLRFMGSSGIRTNNFIV 552 (827)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~--~~~A~~~~~~m~~~~~~p~~~~~ 552 (827)
...++.-|...|+.++|.+.++++....+.+......+..+.-+.++ .+...+++..+.+.|+-+...+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 44555566666666666666666643222222333333334433322 23455555555555554443333
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.87 E-value=95 Score=29.17 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCC
Q 003353 213 FDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268 (827)
Q Consensus 213 ~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 268 (827)
..++..+|..|...++ +......|..-...+-..|++.+|.++|+.-++.+-+|
T Consensus 95 ~~~p~~if~~L~~~~I--G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGI--GTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTS--STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455666666655554 34444555555555555566666666665555544444
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=53.09 E-value=69 Score=26.30 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=32.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 003353 557 ESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQDEQNERHLMAILSATKH 615 (827)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~l~~~~~ 615 (827)
.++...|+|++|..+.+.+ ..||.+.|-+|-. .|.|-.+++...+..+..++.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg~ 99 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSSD 99 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCCC
Confidence 3566677777777665544 4677777766653 356666666666645444443
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.91 E-value=1.2e+02 Score=26.72 Aligned_cols=71 Identities=8% Similarity=-0.145 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003353 443 PTPSTYSCLLEMHASSGQ---VDSAMKLYNSMTSAGLRPGLSTYTALLTLLAKRKLVDVAAKILLEMKTMGYSV 513 (827)
Q Consensus 443 p~~~t~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 513 (827)
|+..+--.+..++.+..+ ..+++.+++++.+.+-.-.....-.|.-++.+.|++++|.++.+.+++..+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 344444444444444443 33455555555542211111222233335566666666666666666654433
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.81 E-value=75 Score=29.90 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003353 528 GSVDHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582 (827)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 582 (827)
+...++..+|..|..+|+-.. ...|......+...|++++|.++|+.-++.+-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666666665544 3345555555666677777777777666666665
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.12 E-value=1e+02 Score=33.01 Aligned_cols=60 Identities=5% Similarity=-0.171 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhC--CccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 273 YNVLMTLFLNKGLPYKAFEIYESMEKG--ECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMK 332 (827)
Q Consensus 273 ~n~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 332 (827)
+..+...|.+.|++++|.+.|.++... +..--...+-.+++.+...+++..+...+.++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555555555555555555432 111123344555555555556655555555543
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.95 E-value=1.1e+02 Score=31.61 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003353 378 YVSLIESYAKAGKLDTALRLWDEMR 402 (827)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~l~~~m~ 402 (827)
.+.++.-|...|+.++|.+.++++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc
Confidence 3455556666666666666666654
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.71 E-value=60 Score=34.78 Aligned_cols=59 Identities=17% Similarity=0.006 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003353 448 YSCLLEMHASSGQVDSAMKLYNSMTSAG--LRPGLSTYTALLTLLAKRKLVDVAAKILLEM 506 (827)
Q Consensus 448 ~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 506 (827)
...+...|.+.|++++|.+.|.++.... ..--...+-.++..+...+++..+.....++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4445555556666666666665555421 1111234444444444455555555444444
No 271
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=47.63 E-value=3.5e+02 Score=30.56 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVL 262 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (827)
+| .+|-.|.|+|.+++|.++.++..
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTG
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhh
Confidence 55 36666778888888888776654
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=45.35 E-value=2.6e+02 Score=28.30 Aligned_cols=167 Identities=10% Similarity=0.032 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCHHHHHHHH
Q 003353 342 IFASLVDSMGKAGRLDTSMKVYMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALR----LWDEMRIAGFRPNFGLFTMII 417 (827)
Q Consensus 342 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~----l~~~m~~~g~~pd~~t~~~li 417 (827)
+|.++..-|.+.+++++|.+++..-- ..+.+.|+...|-+ +.+-..+.+..+|......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34555566667777777777764432 12344555544443 344455567777777777777
Q ss_pred HHHHhcCChh-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003353 418 ESHAKSGKLD-IAMSIFTDMER----AG--FLPTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRPGLSTYTALLTLL 490 (827)
Q Consensus 418 ~~~~~~g~~~-~A~~~~~~m~~----~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 490 (827)
..+.....-+ .=.++.+++.+ .| ..-|+.....+...|.+.|++.+|...|-.- -.-+...+..++--+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHH
Confidence 6665533221 12334444432 21 1236667777777777777777777665411 101233444444333
Q ss_pred Hhc---CCHHHHHHHHHHHHHCCCCchHhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003353 491 AKR---KLVDVAAKILLEMKTMGYSVDVSASDVLMVYIKDGSVDHALRWLRFMG 541 (827)
Q Consensus 491 ~~~---g~~~~A~~l~~~m~~~g~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 541 (827)
... |...++ +......+-.|.-.|+...|..+|+...
T Consensus 176 ~~~~~~~~~~e~--------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTV--------------AEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHH--------------HHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH--------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 322 322221 1123334445667788888888877654
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.36 E-value=1.7e+02 Score=26.02 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCC
Q 003353 216 MLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKI 268 (827)
Q Consensus 216 A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 268 (827)
+.++|..|...++ +......|..-...+-..|++++|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~I--G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGI--GTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTT--TTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5556666655554 34444555555555555666666666665555544444
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=39.30 E-value=2e+02 Score=25.32 Aligned_cols=71 Identities=17% Similarity=0.050 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCch-HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 003353 477 RPGLSTYTALLTLLAKRK---LVDVAAKILLEMKTMGYSVD-VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRTNN 549 (827)
Q Consensus 477 ~pd~~t~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p~~ 549 (827)
.|+..+--.+.-++.+.. +..+++.+++++.+.++... ...+.|..++.+.|++++|.+..+.+++. +|++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 355544444444555544 34467777777776544322 35566677777777777777777777753 4543
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.28 E-value=1.5e+02 Score=26.49 Aligned_cols=49 Identities=10% Similarity=-0.099 Sum_probs=20.6
Q ss_pred HHHHHHHHHHCCCCch--HhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 003353 499 AAKILLEMKTMGYSVD--VSASDVLMVYIKDGSVDHALRWLRFMGSSGIRT 547 (827)
Q Consensus 499 A~~l~~~m~~~g~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~p 547 (827)
+.++|..|...|+... ..|......+...|++.+|.++|+.-.+.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444444444433322 123333334444444444444444444444444
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.49 E-value=95 Score=28.13 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003353 531 DHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAKVDL 584 (827)
Q Consensus 531 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 584 (827)
+++..+|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-+|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 346667777777776655 335555555666778888888888877777766643
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=35.05 E-value=3.4e+02 Score=26.73 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=13.5
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 003353 560 MKNALYESAKPLLETYVES 578 (827)
Q Consensus 560 ~~~g~~~~A~~~~~~m~~~ 578 (827)
...|+.++|..+-+++.+.
T Consensus 111 ~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 111 MVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHhc
Confidence 3567888888777777654
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.40 E-value=2.6e+02 Score=25.22 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCC
Q 003353 214 DGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKID 269 (827)
Q Consensus 214 ~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 269 (827)
+++..+|..|...++ +......|..-...+-..|++.+|.++|+.-++.+-+|-
T Consensus 77 ~~p~~if~~L~~~~I--G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGI--GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTS--STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 346667777777665 345556666666677777777777777777766655553
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.06 E-value=1.1e+02 Score=26.37 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 003353 485 ALLTLLAKRKLVDVAAKILLEM 506 (827)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m 506 (827)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 280
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=32.85 E-value=1.6e+02 Score=22.90 Aligned_cols=58 Identities=28% Similarity=0.346 Sum_probs=38.3
Q ss_pred hcccCccchHHHHHHHHHHHHHHHHHHH-hCCCCCceeeeecchh---------HHHHHHHHHhccCCCc
Q 003353 701 SLDVRNLSVGAALIAVMHTLHRFRKRML-YYGVVPRRIKLVTGPT---------LKIVIAQMLSSVESPF 760 (827)
Q Consensus 701 ~~~~~~~~~g~a~~~~~~~~~~~~~~m~-~~g~~P~~~~~~tg~~---------~~~~~~~~l~~~~~pf 760 (827)
.+|+|.+...-|+..+...+.+...+.. ..|. ..+.+|||.+ ++..|...|.+-+-.|
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~--~~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~ 69 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGK--PYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRF 69 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEECCC---------CHHHHHHHHHHHTTCCE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCc--eEEEEEECCCCCCCCCcchHHHHHHHHHHhCCCce
Confidence 4789999998887665544443332211 1443 4688999842 7888999998877555
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.31 E-value=3.1e+02 Score=26.37 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 339 SFNIFASLVDSMGKAGRLDTSMKVYMEMQ 367 (827)
Q Consensus 339 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 367 (827)
+.......+..+.+.|+-++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34444555566666666666666664443
No 282
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.45 E-value=64 Score=32.75 Aligned_cols=23 Identities=9% Similarity=0.325 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 003353 309 ELMIPSLAKSGRLDAAIKLFQEM 331 (827)
Q Consensus 309 ~~li~~~~~~g~~~~A~~~~~~m 331 (827)
..+|.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34444555555555555555443
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=30.17 E-value=32 Score=33.76 Aligned_cols=7 Identities=14% Similarity=0.192 Sum_probs=2.8
Q ss_pred HHCCCCC
Q 003353 576 VESAAKV 582 (827)
Q Consensus 576 ~~~g~~p 582 (827)
++.|..+
T Consensus 273 l~~Ga~~ 279 (285)
T 1wdy_A 273 CKRGAST 279 (285)
T ss_dssp HHHSSCS
T ss_pred HHcCCCC
Confidence 3334443
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=27.68 E-value=5.5e+02 Score=26.84 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003353 380 SLIESYAKAGKLDTALRLWDEMRIAGFRPN-----FGLFTMIIESHAKSGKLDIAMSIFTDME 437 (827)
Q Consensus 380 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~li~~~~~~g~~~~A~~~~~~m~ 437 (827)
-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345556666666666666665554211111 2233344555556666666666655544
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.46 E-value=3.6e+02 Score=24.63 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHHcCC
Q 003353 374 SAPMYVSLIESYAKAGK 390 (827)
Q Consensus 374 ~~~~~~~li~~~~~~g~ 390 (827)
+...-...+.++.+.+.
T Consensus 156 ~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444444
No 286
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.19 E-value=4.2e+02 Score=26.79 Aligned_cols=54 Identities=6% Similarity=0.075 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003353 529 SVDHALRWLRFMGSSGIRTNN--FIVRQLFESCMKNALYESAKPLLETYVESAAKV 582 (827)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 582 (827)
+..+..++-..+..-+++|.- -+...-+..+.|.+++..|..+-+++++.++.+
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 334555555555555666542 244455566778999999999999998887653
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.85 E-value=1e+02 Score=29.09 Aligned_cols=23 Identities=4% Similarity=0.092 Sum_probs=13.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC
Q 003353 205 DVLNESRDFDGMLSLFDEMVHDS 227 (827)
Q Consensus 205 ~~l~~~g~~~~A~~l~~~m~~~~ 227 (827)
...++.|+.+....+++.+.+.+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 34456677776666666555444
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.63 E-value=1.9e+02 Score=27.61 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003353 531 DHALRWLRFMGSSGIRTN-NFIVRQLFESCMKNALYESAKPLLETYVESAAKV 582 (827)
Q Consensus 531 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 582 (827)
+++..+|..|..+||-.. ...|......+...|++++|.++|+.-++.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466777888877776655 4455555566777888888888888877777666
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.48 E-value=1.1e+02 Score=27.41 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 003353 484 TALLTLLAKRKLVDVAAKILLEMK 507 (827)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~ 507 (827)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344445555555555555555543
No 290
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.29 E-value=4e+02 Score=24.86 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=27.5
Q ss_pred cCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCC
Q 003353 283 KGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGR-----LDAAIKLFQEMKERNF 336 (827)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~ 336 (827)
..+++.|+-.+-+|++.| .|.-..-..++-+.-.-|. +..|...++.....|.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 456677777777777776 5444444444444433332 2334444444455554
No 291
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.28 E-value=4.8e+02 Score=27.75 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=21.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003353 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESH 420 (827)
Q Consensus 387 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 420 (827)
+.++.+.|+..+.+|.+.|..|....-..++.+.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4567888888888888877766544444444443
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.16 E-value=3.4e+02 Score=26.06 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=13.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 003353 382 IESYAKAGKLDTALRLWDEMRI 403 (827)
Q Consensus 382 i~~~~~~g~~~~A~~l~~~m~~ 403 (827)
++.+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4556666667777666665543
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.94 E-value=3.2e+02 Score=23.30 Aligned_cols=64 Identities=9% Similarity=0.160 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHhHhCCcc
Q 003353 238 YNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL--PYKAFEIYESMEKGECS 302 (827)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 302 (827)
...++.-|...|+.++|.+.++++..... ........+..++-+.+. .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44566677777777777777777653111 122333344444433321 23455666666555433
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.67 E-value=70 Score=30.32 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=9.1
Q ss_pred HHcCCHHHHHHHHHHHHHcC
Q 003353 386 AKAGKLDTALRLWDEMRIAG 405 (827)
Q Consensus 386 ~~~g~~~~A~~l~~~m~~~g 405 (827)
++.|+.+.+..+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455554444444444433
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.30 E-value=5.5e+02 Score=25.73 Aligned_cols=27 Identities=7% Similarity=-0.041 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
....++.-|...|+.++|...++++..
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 345678888888899999888888754
No 296
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.17 E-value=5.7e+02 Score=25.85 Aligned_cols=53 Identities=19% Similarity=0.016 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch
Q 003353 462 DSAMKLYNSMTSAGLRPGL--STYTALLTLLAKRKLVDVAAKILLEMKTMGYSVD 514 (827)
Q Consensus 462 ~~A~~l~~~m~~~g~~pd~--~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 514 (827)
.+.+++-.-+....++|.. .+...-+....+.+++..|..+-+++++.+..++
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 3444444444444444432 2445556666677777777777777777665443
No 297
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.69 E-value=5.8e+02 Score=26.29 Aligned_cols=26 Identities=4% Similarity=0.018 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHh
Q 003353 238 YNRVIQYLAKADKLEMSYCCFKKVLD 263 (827)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (827)
...++.-|...|+.++|.+.++++..
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~ 40 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRA 40 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 34566666777777777777776653
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.31 E-value=40 Score=31.95 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=7.4
Q ss_pred HHhcCChhHHHHHHH
Q 003353 207 LNESRDFDGMLSLFD 221 (827)
Q Consensus 207 l~~~g~~~~A~~l~~ 221 (827)
.++.|+.+....+++
T Consensus 16 A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 16 ATQYGIYERCRELVE 30 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCChHHHHHHHH
Confidence 345566555444443
No 299
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.16 E-value=4.3e+02 Score=24.06 Aligned_cols=154 Identities=12% Similarity=-0.055 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 003353 195 PGDECYVMLFDVLNESRDFDGMLSLFDEMVHDSSKNGISLFSAYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYN 274 (827)
Q Consensus 195 p~~~~~~~li~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n 274 (827)
++...-...+..+++.+.. ++...+.+++. .++..+-...+.++.+.+..+ +...+..+.+ .+|...-.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~------~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~ 99 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK------DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQ 99 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT------CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc------CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHH
Confidence 3444444555555555553 23333333322 234555555566666666533 2233333332 24555555
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhCCccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 275 VLMTLFLNKGLPYKAFEIYESMEKGECSLDGSTYELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASLVDSMGKAG 354 (827)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 354 (827)
..+.++.+.+..+ +...+.++... ++...-...+.++.+.|..+ +...+..+.+ .++..+-...+.++.+.+
T Consensus 100 ~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 100 SAAVALGQIGDER-AVEPLIKALKD---EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcHH-HHHHHHHHHhC---CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 5666666666533 33444444432 45555556666666666543 3333333332 345555556666666666
Q ss_pred CHHHHHHHHHHHHh
Q 003353 355 RLDTSMKVYMEMQG 368 (827)
Q Consensus 355 ~~~~A~~~~~~m~~ 368 (827)
. .++...+.++.+
T Consensus 172 ~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 172 G-ERVRAAMEKLAE 184 (211)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHh
Confidence 5 344444444443
No 300
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.67 E-value=4.7e+02 Score=24.38 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=22.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003353 387 KAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSG 424 (827)
Q Consensus 387 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 424 (827)
+..+.+.|+-.+.+|.+.| .|....-..++-+...-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4567777777777777777 555444444554444444
No 301
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=22.66 E-value=61 Score=31.63 Aligned_cols=13 Identities=8% Similarity=0.102 Sum_probs=5.4
Q ss_pred HHHHHHHHHCCCC
Q 003353 465 MKLYNSMTSAGLR 477 (827)
Q Consensus 465 ~~l~~~m~~~g~~ 477 (827)
.++.+.+.+.|..
T Consensus 199 ~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 199 EAITHLLLDHGAD 211 (285)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 3444444444433
No 302
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.55 E-value=8.3e+02 Score=27.20 Aligned_cols=397 Identities=10% Similarity=-0.011 Sum_probs=206.4
Q ss_pred CccHHHHhhhCCCCCCHHHH----HHHHHccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003353 148 GPELETQLDKLQFVPKMVHI----TQALKVINDSDTSLSLFRWAKRQSWYVPGDECYVMLFDVLNESRDFDGMLSLFDEM 223 (827)
Q Consensus 148 ~~~~~~~l~~~~~~p~~~~~----~~~l~~~~~~~~Al~~f~~~~~~~~~~p~~~~~~~li~~l~~~g~~~~A~~l~~~m 223 (827)
..++..++....-.|-...+ ...|...+++...+.++. . .+.+...-.....+....|+-++|......+
T Consensus 55 ~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~----~--~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 55 AVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP----E--KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC----S--CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc----C--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 34677777776655544332 344445566765555443 1 1345555556677788889988888888888
Q ss_pred HHcCCCCCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHhHhCCCCCCHHHHHHHHHHH-----------HH-cCChhHH
Q 003353 224 VHDSSKNGISLFSAYNRVIQYLAKADKLEM--SYCCFKKVLDSDCKIDTQSYNVLMTLF-----------LN-KGLPYKA 289 (827)
Q Consensus 224 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~~g~~p~~~~~n~li~~~-----------~~-~g~~~~A 289 (827)
-..+ ......+..++..+.+.|.+.. ...=++.+...| +...-..|+... .. ..+...+
T Consensus 129 W~~~----~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~ 201 (618)
T 1qsa_A 129 WLTG----KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTV 201 (618)
T ss_dssp HSCS----SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH
T ss_pred HhCC----CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH
Confidence 7776 5566777778888777665432 222233333322 111111111111 00 0112222
Q ss_pred HHHHHHhHhCCccCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCCHHHHHHH
Q 003353 290 FEIYESMEKGECSLDGST---YELMIPSLAKSGRLDAAIKLFQEMKERNFRPSFNIFASL----VDSMGKAGRLDTSMKV 362 (827)
Q Consensus 290 ~~~~~~m~~~g~~pd~~t---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----i~~~~~~g~~~~A~~~ 362 (827)
...... +.++... +...+.-+.+. +.+.|...+....+.. ..+......+ ...+...+...++...
T Consensus 202 ~~~~~~-----~~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~ 274 (618)
T 1qsa_A 202 LTFART-----TGATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKW 274 (618)
T ss_dssp HHHHHH-----SCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHH
T ss_pred HHHHhc-----cCCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 221111 1222221 22223333333 7789999998887554 2333333222 2233334435566667
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 003353 363 YMEMQGCGHRPSAPMYVSLIESYAKAGKLDTALRLWDEMRIAGFRPNFGLFTMIIESHAKSGKLDIAMSIFTDMERAGFL 442 (827)
Q Consensus 363 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 442 (827)
+....... .+.....-.+....+.|+++.|...|+.|...... .....--+..++...|+.++|..+|..+.+.
T Consensus 275 ~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--- 348 (618)
T 1qsa_A 275 RDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ--- 348 (618)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---
T ss_pred HHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---
Confidence 76655443 33333333444455779999999999888653222 2333334566778899999999999998752
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC---CHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHh
Q 003353 443 PTPSTYSCLLEMHASSGQVDSAMKLYNSMTSAGLRP---GLST---YTALLTLLAKRKLVDVAAKILLEMKTMGYSVDVS 516 (827)
Q Consensus 443 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~ 516 (827)
. +|-.++ +-.+.|..... ....+.+ .... -...+..+...|....|...+..+.+. ..+ ..
T Consensus 349 -~--~fYg~l-Aa~~Lg~~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~~~-~~ 415 (618)
T 1qsa_A 349 -R--GFYPMV-AAQRIGEEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-KSK-TE 415 (618)
T ss_dssp -C--SHHHHH-HHHHTTCCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCH-HH
T ss_pred -C--ChHHHH-HHHHcCCCCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-CCH-HH
Confidence 2 233333 22233321000 0000111 1111 112345677889999999888887764 222 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003353 517 ASDVLMVYIKDGSVDHALRWLRFMGSSGI----RTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLV 585 (827)
Q Consensus 517 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 585 (827)
...+.......|..+.++.........+. -|. -|...+..+++.-.++.++-.---..|.+..|+.+
T Consensus 416 ~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~--~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 416 QAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPL--AYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCC--TTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCc--chHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 33444455677888887766654433221 011 13334445555444555443333445667777654
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.28 E-value=2.7e+02 Score=24.27 Aligned_cols=59 Identities=8% Similarity=0.086 Sum_probs=41.3
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003353 539 FMGSSGIRTNNFIVRQLFESCMKNALYESAKPLLETYVESAAKVDLVLYTSVLAHLVRCQ 598 (827)
Q Consensus 539 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 598 (827)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.++..+..|..-.|+.+...|
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 45567777665543 233555566677788999999988888888887777777766555
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.24 E-value=3e+02 Score=24.42 Aligned_cols=64 Identities=9% Similarity=0.170 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHhHhCCc
Q 003353 237 AYNRVIQYLAKADKLEMSYCCFKKVLDSDCKIDTQSYNVLMTLFLNKGL--PYKAFEIYESMEKGEC 301 (827)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~n~li~~~~~~g~--~~~A~~~~~~m~~~g~ 301 (827)
..+.++.-|...|+.++|.+.++++..... ........+..++-+.+. .+.+..++..+...|+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 345566777777777777777777653111 122333344444433222 2345566666655543
No 305
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=20.87 E-value=3.1e+02 Score=21.93 Aligned_cols=59 Identities=25% Similarity=0.313 Sum_probs=40.8
Q ss_pred hhcccCccchHHHHHHHHHHHHHHHHHHH-hCCCCCceeeeecch---------hHHHHHHHHHhccCCCc
Q 003353 700 WSLDVRNLSVGAALIAVMHTLHRFRKRML-YYGVVPRRIKLVTGP---------TLKIVIAQMLSSVESPF 760 (827)
Q Consensus 700 w~~~~~~~~~g~a~~~~~~~~~~~~~~m~-~~g~~P~~~~~~tg~---------~~~~~~~~~l~~~~~pf 760 (827)
..+|+|.+...-|+..+...+........ ..| ...+.+|||. .++..|...|.+.+..|
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g--~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~ 77 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG--KPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRF 77 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTC--CSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCE
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCC--CeEEEEEECcCCCCCCCcchHHHHHHHHHhhCCCcc
Confidence 56899999998887766555544332222 244 3478999984 28889999999877644
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.85 E-value=1.5e+02 Score=28.42 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhCCccC
Q 003353 252 EMSYCCFKKVLDSDCKI-DTQSYNVLMTLFLNKGLPYKAFEIYESMEKGECSL 303 (827)
Q Consensus 252 ~~A~~~~~~m~~~g~~p-~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p 303 (827)
+++.++|..|...|+-. -..-|......+-..|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34555566555554432 23345555555555666666666666655554444
Done!